Rodentia ANCESTRAL SPECIES 10 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Muroidea ANCESTRAL SPECIES 13 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f Murinae ANCESTRAL SPECIES 14 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.b ##36 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Mus ANCESTRAL SPECIES 9 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 Shrew mouse MODERN SPECIES 23 MGP_PahariEiJ_G0031886 #7 MGP_PahariEiJ_G0031885 #8 MGP_PahariEiJ_G0031887 #9 Pou3f4 (MGP_PahariEiJ_G0031888) #10 MGP_PahariEiJ_G0031889 #11 Rps6ka6 (MGP_PahariEiJ_G0031890) #12 Hdx (MGP_PahariEiJ_G0031891) #13 MGP_PahariEiJ_G0031892 #14 4933403O08Rik (MGP_PahariEiJ_G0031893) #15 Apool (MGP_PahariEiJ_G0031894) #16 Satl1 (MGP_PahariEiJ_G0031895) #17 2010106E10Rik (MGP_PahariEiJ_G0031896) #18 Zfp711 (MGP_PahariEiJ_G0031897) #19 Pof1b (MGP_PahariEiJ_G0031898) #20 Chm (MGP_PahariEiJ_G0031899) #21 Dach2 (MGP_PahariEiJ_G0031900) #22 Klhl4 (MGP_PahariEiJ_G0031901) #23 MGP_PahariEiJ_G0031902 #24 MGP_PahariEiJ_G0031903 #25 MGP_PahariEiJ_G0031904 #26 MGP_PahariEiJ_G0031905 #27 Cpxcr1 (MGP_PahariEiJ_G0031906) #28 MGP_PahariEiJ_G0031907 #29 Pabpc5 (MGP_PahariEiJ_G0031908) #30 Pcdh11x (MGP_PahariEiJ_G0031909) #31 Nap1l3 (MGP_PahariEiJ_G0031910) #32 MGP_PahariEiJ_G0031911 #33 Dmtf1l (MGP_PahariEiJ_G0031912) #34 MGP_PahariEiJ_G0031913 #35 MGP_PahariEiJ_G0031914 #36 Cldn34c4 (MGP_PahariEiJ_G0031915) #37 Mus_A ANCESTRAL SPECIES 15 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888.e #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000163020 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 Mus_B ANCESTRAL SPECIES 14 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888.f #27 ENSGT00940000163888.e #27 ENSGT00390000003732 #28 ENSGT00940000163020.o ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000163020.p ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00390000005717.f.b #33 ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 Mouse MODERN SPECIES 37 Sh3bgrl (ENSMUSG00000031246) Gm6377 (ENSMUSG00000048621) Pou3f4 (ENSMUSG00000056854) #10 Cylc1 (ENSMUSG00000073001) #11 Rps6ka6 (ENSMUSG00000025665) #12 Hdx (ENSMUSG00000034551) #13 Gm45194 (ENSMUSG00000109156) Tex16 (ENSMUSG00000034555) #14 4933403O08Rik (ENSMUSG00000079460) #15 Apool (ENSMUSG00000025525) #16 Satl1 (ENSMUSG00000025527) #17 2010106E10Rik (ENSMUSG00000025528) #18 Zfp711 (ENSMUSG00000025529) #19 Pof1b (ENSMUSG00000034607) #20 Chm (ENSMUSG00000025531) #21 Dach2 (ENSMUSG00000025592) #22 Klhl4 (ENSMUSG00000025597) #23 Ube2dnl1 (ENSMUSG00000050435) #27 Ube2dnl2 (ENSMUSG00000047079) #27 Cpxcr1 (ENSMUSG00000072995) #28 H2ab2 (ENSMUSG00000082482) H2ab1 (ENSMUSG00000067441) Tgif2lx2 (ENSMUSG00000100194) #29 Tgif2lx1 (ENSMUSG00000100133) #29 Pabpc5 (ENSMUSG00000034732) #30 Pcdh11x (ENSMUSG00000034755) #31 H2ab3 (ENSMUSG00000083616) Nap1l3 (ENSMUSG00000055733) #32 Cldn34c1 (ENSMUSG00000079450) #33 Gm2411 (ENSMUSG00000118415) #33 ENSMUSG00000121514 Mus_C ANCESTRAL SPECIES 22 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888.f #27 ENSGT00940000163888.e #27 ENSGT00940000163020.o ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 spretus MODERN SPECIES 19 Sh3bgrl (MGP_SPRETEiJ_G0034510) Gm6377 (MGP_SPRETEiJ_G0034511) Pou3f4 (MGP_SPRETEiJ_G0034512) #10 Cylc1 (MGP_SPRETEiJ_G0034513) #11 MGP_SPRETEiJ_G0034514 Rps6ka6 (MGP_SPRETEiJ_G0034515) #12 MGP_SPRETEiJ_G0034516 Hdx (MGP_SPRETEiJ_G0034517) #13 4933403O08Rik (MGP_SPRETEiJ_G0034519) #15 Apool (MGP_SPRETEiJ_G0034520) #16 Satl1 (MGP_SPRETEiJ_G0034521) #17 2010106E10Rik (MGP_SPRETEiJ_G0034522) #18 Zfp711 (MGP_SPRETEiJ_G0034523) #19 Pof1b (MGP_SPRETEiJ_G0034524) #20 Chm (MGP_SPRETEiJ_G0034525) #21 Dach2 (MGP_SPRETEiJ_G0034526) #22 Klhl4 (MGP_SPRETEiJ_G0034527) #23 Ube2dnl1 (MGP_SPRETEiJ_G0034528) #27 Ube2dnl2 (MGP_SPRETEiJ_G0034529) #27 MGP_SPRETEiJ_G0034530 Cpxcr1 (MGP_SPRETEiJ_G0034531) #28 MGP_SPRETEiJ_G0034532 Pabpc5 (MGP_SPRETEiJ_G0034533) #30 Pcdh11x (MGP_SPRETEiJ_G0034534) #31 Nap1l3 (MGP_SPRETEiJ_G0034535) #32 MGP_SPRETEiJ_G0034536 #33 Dmtf1l (MGP_SPRETEiJ_G0034537) #34 MGP_SPRETEiJ_G0034538 #35 MGP_SPRETEiJ_G0034539 #36 Cldn34c4 (MGP_SPRETEiJ_G0034540) #37 Rbm31y (MGP_SPRETEiJ_G0034541) Steppe mouse MODERN SPECIES 2206 ENSMSIG00000026424 #22 Ryukyu mouse MODERN SPECIES 19 MGP_CAROLIEiJ_G0033345 Sh3bgrl (MGP_CAROLIEiJ_G0033346) Gm6377 (MGP_CAROLIEiJ_G0033347) Pou3f4 (MGP_CAROLIEiJ_G0033348) #10 Cylc1 (MGP_CAROLIEiJ_G0033349) #11 Rps6ka6 (MGP_CAROLIEiJ_G0033350) #12 Hdx (MGP_CAROLIEiJ_G0033351) #13 MGP_CAROLIEiJ_G0033352 #14 4933403O08Rik (MGP_CAROLIEiJ_G0033353) #15 Apool (MGP_CAROLIEiJ_G0033354) #16 Satl1 (MGP_CAROLIEiJ_G0033355) #17 2010106E10Rik (MGP_CAROLIEiJ_G0033356) #18 Zfp711 (MGP_CAROLIEiJ_G0033357) #19 Pof1b (MGP_CAROLIEiJ_G0033358) #20 Chm (MGP_CAROLIEiJ_G0033359) #21 Dach2 (MGP_CAROLIEiJ_G0033360) #22 Klhl4 (MGP_CAROLIEiJ_G0033361) #23 MGP_CAROLIEiJ_G0033362 #27 MGP_CAROLIEiJ_G0033363 #27 Cpxcr1 (MGP_CAROLIEiJ_G0033364) #28 MGP_CAROLIEiJ_G0033365 MGP_CAROLIEiJ_G0033366 #29 Pabpc5 (MGP_CAROLIEiJ_G0033367) #30 Pcdh11x (MGP_CAROLIEiJ_G0033368) #31 MGP_CAROLIEiJ_G0033369 MGP_CAROLIEiJ_G0033370 Nap1l3 (MGP_CAROLIEiJ_G0033371) #32 Dmtf1l (MGP_CAROLIEiJ_G0033372) #34 MGP_CAROLIEiJ_G0033373 #35 MGP_CAROLIEiJ_G0033374 #36 Cldn34c4 (MGP_CAROLIEiJ_G0033375) #37 Rat MODERN SPECIES 46 Pou3f4 (ENSRNOG00000002784) #10 Ankra2 (ENSRNOG00000016622) Cylc1 (ENSRNOG00000056740) #11 Rps6ka6 (ENSRNOG00000002592) #12 Hdx (ENSRNOG00000037799) #13 LOC100363993 (ENSRNOG00000067650) #14 Ube2d4l1 (ENSRNOG00000065297) #27 4933403O08Rik (ENSRNOG00000042394) #15 Apool (ENSRNOG00000004512) #16 Satl1 (ENSRNOG00000022476) #17 RGD1561958 (ENSRNOG00000022411) #18 Zfp711 (ENSRNOG00000022391) #19 Pof1b (ENSRNOG00000004795) #20 ENSRNOG00000064035 Chm (ENSRNOG00000000161) #21 Dach2 (ENSRNOG00000004869) #22 Klhl4 (ENSRNOG00000005215) #23 RGD1561582 (ENSRNOG00000065209) LOC120099227 (ENSRNOG00000029497) #27 M6pr-ps1 (ENSRNOG00000069568) AABR07039936.1 (ENSRNOG00000037770) H2ab3 (ENSRNOG00000029736) ENSRNOG00000070967 ENSRNOG00000064387 ENSRNOG00000063657 Tgif2lx2 (ENSRNOG00000029850) #29 Pabpc5 (ENSRNOG00000003354) #30 Pcdh11x (ENSRNOG00000069840) #31 Ventx (ENSRNOG00000021972) LOC685776 (ENSRNOG00000053601) Nap1l3 (ENSRNOG00000029087) #32 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00900000141059.y.b ##36 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f #37 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000156017 ENSGT00940000161429 #10 ENSGT01030000235438 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 Chinese hamster chok1gshd MODERN SPECIES 16 Pou3f4 (ENSCGRG00001011962) #10 ENSCGRG00001016928 Cylc1 (ENSCGRG00001014177) #11 Rps6ka6 (ENSCGRG00001019587) #12 Hdx (ENSCGRG00001001736) #13 Tex16 (ENSCGRG00001020189) #14 ENSCGRG00001007339 #27 4933403O08Rik (ENSCGRG00001018687) #15 ENSCGRG00001000206 #16 ENSCGRG00001000138 #17 2010106E10Rik (ENSCGRG00001018464) #18 Zfp711 (ENSCGRG00001010150) #19 Pof1b (ENSCGRG00001015632) #20 Chm (ENSCGRG00001006793) #21 Tpm3-rs7 (ENSCGRG00001006979) Dach2 (ENSCGRG00001023530) #22 ENSCGRG00001006882 Klhl4 (ENSCGRG00001016767) #23 ENSCGRG00001004881 #27 ENSCGRG00001010570 #36 ENSCGRG00001003703 #37 ENSCGRG00001006460 ENSCGRG00001009434 Diaph2 (ENSCGRG00001018454) ENSCGRG00001023968 ENSCGRG00001022345 Pcdh19 (ENSCGRG00001014584) Tnmd (ENSCGRG00001002116) Tspan6 (ENSCGRG00001023806) Srpx2 (ENSCGRG00001015475) Sytl4 (ENSCGRG00001016125) Golden Hamster MODERN SPECIES 758 Pou3f4 (ENSMAUG00000016709) #10 ENSMAUG00000007023 Rps6ka6 (ENSMAUG00000001357) #12 Hdx (ENSMAUG00000000922) #13 ENSMAUG00000018096 Tex16 (ENSMAUG00000006556) #14 ENSMAUG00000016626 #27 4933403O08Rik (ENSMAUG00000009376) #15 Apool (ENSMAUG00000014048) #16 Satl1 (ENSMAUG00000016111) #17 2010106E10Rik (ENSMAUG00000012995) #18 Zfp711 (ENSMAUG00000012277) #19 Pof1b (ENSMAUG00000012853) #20 ENSMAUG00000016526 Chm (ENSMAUG00000017065) #21 Dach2 (ENSMAUG00000010782) #22 ENSMAUG00000016494 Klhl4 (ENSMAUG00000014371) #23 Cricetidae_B ANCESTRAL SPECIES 47 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00900000141059.y.b ##36 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Northern American deer mouse MODERN SPECIES 475 Gm6377 (ENSPEMG00000023246) ENSPEMG00000025843 Pou3f4 (ENSPEMG00000003663) #10 Cylc1 (ENSPEMG00000017301) #11 Rps6ka6 (ENSPEMG00000015736) #12 Hdx (ENSPEMG00000011250) #13 4933403O08Rik (ENSPEMG00000025473) #15 ENSPEMG00000022787 Apool (ENSPEMG00000024018) #16 ENSPEMG00000026639 #17 2010106E10Rik (ENSPEMG00000015852) #18 Zfp711 (ENSPEMG00000028793) #19 Pof1b (ENSPEMG00000023660) #20 Chm (ENSPEMG00000019556) #21 ENSPEMG00000025540 Dach2 (ENSPEMG00000011157) #22 Gm773 (ENSPEMG00000019841) Klhl4 (ENSPEMG00000019669) #23 ENSPEMG00000029835 #27 Cpxcr1 (ENSPEMG00000026829) #28 ENSPEMG00000025979 ENSPEMG00000014179 ENSPEMG00000024456 #29 ENSPEMG00000014414 ENSPEMG00000023744 Pabpc5 (ENSPEMG00000000171) #30 Pcdh11x (ENSPEMG00000010745) #31 Nap1l3 (ENSPEMG00000021317) #32 ENSPEMG00000020890 ENSPEMG00000031172 ENSPEMG00000015049 Prairie vole MODERN SPECIES 96 Pou3f4 (ENSMOCG00000001063) #10 Cylc1 (ENSMOCG00000002144) #11 Rps6ka6 (ENSMOCG00000000070) #12 Hdx (ENSMOCG00000016956) #13 ENSMOCG00000012225 Tex16 (ENSMOCG00000016239) #14 4933403O08Rik (ENSMOCG00000010080) #15 Apool (ENSMOCG00000019380) #16 Satl1 (ENSMOCG00000003777) #17 2010106E10Rik (ENSMOCG00000017647) #18 Zfp711 (ENSMOCG00000003046) #19 Pof1b (ENSMOCG00000014928) #20 ENSMOCG00000000578 ENSMOCG00000015094 Chm (ENSMOCG00000020359) #21 Dach2 (ENSMOCG00000011776) #22 Klhl4 (ENSMOCG00000008772) #23 ENSMOCG00000014742 ENSMOCG00000013238 Upper Galilee mountains blind mole rat MODERN SPECIES 503 ENSNGAG00000021355 ENSNGAG00000018332 Sh3bgrl (ENSNGAG00000008553) ENSNGAG00000023856 ENSNGAG00000018747 Pou3f4 (ENSNGAG00000013024) #10 Rps6ka6 (ENSNGAG00000013321) #12 Hdx (ENSNGAG00000022021) #13 ENSNGAG00000020473 ENSNGAG00000007069 #14 4933403O08Rik (ENSNGAG00000001929) #15 Apool (ENSNGAG00000023555) #16 Zfp711 (ENSNGAG00000015585) #19 Pof1b (ENSNGAG00000024266) #20 Chm (ENSNGAG00000011917) #21 Dach2 (ENSNGAG00000023673) #22 Klhl4 (ENSNGAG00000023295) #23 ENSNGAG00000021206 Lesser Egyptian jerboa MODERN SPECIES 173 Brwd3 (ENSJJAG00000022949) ENSJJAG00000021895 ENSJJAG00000022040 Pou3f4 (ENSJJAG00000012452) #10 ENSJJAG00000022322 ENSJJAG00000022439 ENSJJAG00000022602 Rps6ka6 (ENSJJAG00000023727) #12 Hdx (ENSJJAG00000004610) #13 4933403O08Rik (ENSJJAG00000005323) #15 Apool (ENSJJAG00000007396) #16 ENSJJAG00000009900 #18 Zfp711 (ENSJJAG00000010450) #19 Pof1b (ENSJJAG00000010917) #20 Chm (ENSJJAG00000012459) #21 Dach2 (ENSJJAG00000014515) #22 ENSJJAG00000000038 Klhl4 (ENSJJAG00000000299) #23 Kangaroo rat MODERN SPECIES 399 Brwd3 (ENSDORG00000003314) Sh3bgrl (ENSDORG00000029190) Pou3f4 (ENSDORG00000006273) #10 Rps6ka6 (ENSDORG00000008579) #12 Hdx (ENSDORG00000012098) #13 ENSDORG00000029968 4933403O08Rik (ENSDORG00000027967) #15 Apool (ENSDORG00000011045) #16 Zfp711 (ENSDORG00000012010) #19 Pof1b (ENSDORG00000012012) #20 ENSDORG00000026546 Chm (ENSDORG00000011463) #21 ENSDORG00000029836 Dach2 (ENSDORG00000005499) #22 Klhl4 (ENSDORG00000013698) #23 ENSDORG00000028193 ENSDORG00000023362 Pcdh11x (ENSDORG00000011507) #31 ENSDORG00000029858 ENSDORG00000029549 Nap1l3 (ENSDORG00000025524) #32 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Sciuridae ANCESTRAL SPECIES 35 ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888.n #27 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00430000032886 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Marmotini ANCESTRAL SPECIES 78 ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00390000002792.cb #14 ENSGT00940000163888.n #27 ENSGT00940000163888.m #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000153412.C.c ENSGT00950000183164.C ENSGT00950000183164.D ENSGT00940000153412.A.v ENSGT00950000183164.B.h ENSGT00950000183164.E ENSGT00940000162932 ENSGT00940000155193.a.a.f ENSGT00940000155762.ac ENSGT00390000007539.i.b.b ENSGT00940000153412.A.u Marmotini_b ANCESTRAL SPECIES 121 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00390000002792.cb #14 ENSGT00940000163888.n #27 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000153412.C.c ENSGT00950000183164.C.g ENSGT00950000183164.D ENSGT00940000153412.A.v ENSGT00950000183164.B.h ENSGT00950000183164.E ENSGT00940000162932 ENSGT00940000155193.a.a.f ENSGT00940000155762.ac Arctic ground squirrel MODERN SPECIES 545 DACH2 (ENSUPAG00010005031) #22 Squirrel MODERN SPECIES 147 BRWD3 (ENSSTOG00000004508) ENSSTOG00000030741 SH3BGRL (ENSSTOG00000013216) ENSSTOG00000026305 POU3F4 (ENSSTOG00000026467) #10 RPS6KA6 (ENSSTOG00000002290) #12 HDX (ENSSTOG00000015440) #13 ENSSTOG00000033550 ENSSTOG00000027226 #27 ENSSTOG00000023046 #15 APOOL (ENSSTOG00000005067) #16 ENSSTOG00000029673 #18 ZNF711 (ENSSTOG00000008918) #19 POF1B (ENSSTOG00000011717) #20 CHM (ENSSTOG00000022111) #21 DACH2 (ENSSTOG00000006685) #22 ENSSTOG00000029794 ENSSTOG00000008144 TCEAL7 (ENSSTOG00000005945) ENSSTOG00000016142 ENSSTOG00000027481 ENSSTOG00000024937 TCEAL8 (ENSSTOG00000004386) BEX4 (ENSSTOG00000004130) ENSSTOG00000031997 ENSSTOG00000030112 Alpin marmot MODERN SPECIES 78 ENSMMMG00000011351 ENSMMMG00000011334 SH3BGRL (ENSMMMG00000011328) ENSMMMG00000011323 ENSMMMG00000011315 ENSMMMG00000011302 CYLC1 (ENSMMMG00000011257) #11 RPS6KA6 (ENSMMMG00000011222) #12 HDX (ENSMMMG00000011191) #13 ENSMMMG00000011171 #14 APOOL (ENSMMMG00000011126) #16 ENSMMMG00000011112 #17 ENSMMMG00000011100 #19 POF1B (ENSMMMG00000011075) #20 CHM (ENSMMMG00000010964) #21 DACH2 (ENSMMMG00000010801) #22 BEX3 (ENSMMMG00000010779) TCEAL7 (ENSMMMG00000010775) ENSMMMG00000010770 ENSMMMG00000010766 BEX4 (ENSMMMG00000010757) ENSMMMG00000010744 ENSMMMG00000010721 NXF3 (ENSMMMG00000010686) ENSMMMG00000010684 ENSMMMG00000010680 ENSMMMG00000010671 BEX5 (ENSMMMG00000010668) ENSMMMG00000010629 #9 ENSMMMG00000010564 Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005010323 ENSSVLG00005024677 POU3F4 (ENSSVLG00005024640) #10 CYLC1 (ENSSVLG00005024602) #11 RPS6KA6 (ENSSVLG00005024442) #12 HDX (ENSSVLG00005024346) #13 ENSSVLG00005024315 #14 ENSSVLG00005024295 #27 ENSSVLG00005024287 APOOL (ENSSVLG00005024251) #16 ENSSVLG00005024204 #17 ENSSVLG00005024140 #18 ZNF711 (ENSSVLG00005024106) #19 POF1B (ENSSVLG00005023983) #20 ENSSVLG00005023891 #21 DACH2 (ENSSVLG00005023583) #22 KLHL4 (ENSSVLG00005023401) #23 ENSSVLG00005023341 #27 ENSSVLG00005023323 ENSSVLG00005023291 CPXCR1 (ENSSVLG00005023282) #28 ENSSVLG00005023265 ENSSVLG00005023244 ENSSVLG00005023178 ENSSVLG00005023139 #29 ENSSVLG00005023114 ENSSVLG00005023085 PABPC5 (ENSSVLG00005023058) #30 ENSSVLG00005022794 #31 ENSSVLG00005022703 NAP1L3 (ENSSVLG00005022672) #32 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00730000111097.e ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f ENSGT00940000154325.a ENSGT00390000013235.a Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00950000183115.b.b ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00730000111097.e Hystricomorpha_b ANCESTRAL SPECIES 113 ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00730000111097.e Long-tailed chinchilla MODERN SPECIES 232 CHM (ENSCLAG00000000388) #21 ENSCLAG00000000470 DACH2 (ENSCLAG00000000583) #22 KLHL4 (ENSCLAG00000000423) #23 ENSCLAG00000000558 #27 ENSCLAG00000017417 #27 PABPC5 (ENSCLAG00000000647) #30 ENSCLAG00000000772 #31 ENSCLAG00000000860 Degu MODERN SPECIES 144 SH3BGRL (ENSODEG00000003326) ENSODEG00000003422 ENSODEG00000003430 POU3F4 (ENSODEG00000019055) #10 RPS6KA6 (ENSODEG00000003590) #12 HDX (ENSODEG00000000832) #13 ENSODEG00000000866 APOOL (ENSODEG00000000970) #16 ENSODEG00000000990 ENSODEG00000001004 #18 ZNF711 (ENSODEG00000001046) #19 POF1B (ENSODEG00000001140) #20 ENSODEG00000001180 CHM (ENSODEG00000001208) #21 ENSODEG00000018560 DACH2 (ENSODEG00000000554) #22 ENSODEG00000000657 ENSODEG00000000679 KLHL4 (ENSODEG00000000734) #23 ENSODEG00000000810 ENSODEG00000000827 ENSODEG00000000850 ENSODEG00000000697 #31 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000050061 ENSHGLG00000050316 #10 ENSHGLG00000040597 ENSHGLG00000037398 RPS6KA6 (ENSHGLG00000004511) #12 HDX (ENSHGLG00000003945) #13 ENSHGLG00000045926 ENSHGLG00000035970 APOOL (ENSHGLG00000003635) #16 ENSHGLG00000003516 #18 ZNF711 (ENSHGLG00000003254) #19 POF1B (ENSHGLG00000003095) #20 ENSHGLG00000033497 ENSHGLG00000041349 CHM (ENSHGLG00000002772) #21 DACH2 (ENSHGLG00000008869) #22 ENSHGLG00000020892 ENSHGLG00000034462 ENSHGLG00000002543 #23 ENSHGLG00000049697 ENSHGLG00000014839 ENSHGLG00000046264 ENSHGLG00000000569 ENSHGLG00000051013 ENSHGLG00000000237 ENSHGLG00000044864 ENSHGLG00000032760 ENSHGLG00000020027 ENSHGLG00000000267 #31 ENSHGLG00000035133 PABPC5 (ENSHGLG00000047468) #30