Gnathostomata ANCESTRAL SPECIES 1 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00990000205517 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000156743 ENSGT00940000155487 ENSGT00940000157767 ENSGT00940000156894 ENSGT00900000143708 ENSGT00940000155454 ENSGT00940000155219 ENSGT00480000042679.b.b ENSGT00390000013700 ENSGT00940000157039.b Euteleostomi ANCESTRAL SPECIES 58 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000157209 ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000160294 Sarcopterygii ANCESTRAL SPECIES 112 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a Tetrapoda ANCESTRAL SPECIES 20 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a Amniota ANCESTRAL SPECIES 24 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Mammalia ANCESTRAL SPECIES 44 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000154325.a Theria ANCESTRAL SPECIES 33 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075 #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000154325.a ENSGT00390000013235 Eutheria ANCESTRAL SPECIES 16 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Boreoeutheria ANCESTRAL SPECIES 11 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Euarchontoglires ANCESTRAL SPECIES 11 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Glires ANCESTRAL SPECIES 10 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Rodentia ANCESTRAL SPECIES 10 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Muroidea ANCESTRAL SPECIES 13 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f Murinae ANCESTRAL SPECIES 14 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.b ##36 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Mus ANCESTRAL SPECIES 9 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 Shrew mouse MODERN SPECIES 23 MGP_PahariEiJ_G0031886 #7 MGP_PahariEiJ_G0031885 #8 MGP_PahariEiJ_G0031887 #9 Pou3f4 (MGP_PahariEiJ_G0031888) #10 MGP_PahariEiJ_G0031889 #11 Rps6ka6 (MGP_PahariEiJ_G0031890) #12 Hdx (MGP_PahariEiJ_G0031891) #13 MGP_PahariEiJ_G0031892 #14 4933403O08Rik (MGP_PahariEiJ_G0031893) #15 Apool (MGP_PahariEiJ_G0031894) #16 Satl1 (MGP_PahariEiJ_G0031895) #17 2010106E10Rik (MGP_PahariEiJ_G0031896) #18 Zfp711 (MGP_PahariEiJ_G0031897) #19 Pof1b (MGP_PahariEiJ_G0031898) #20 Chm (MGP_PahariEiJ_G0031899) #21 Dach2 (MGP_PahariEiJ_G0031900) #22 Klhl4 (MGP_PahariEiJ_G0031901) #23 MGP_PahariEiJ_G0031902 #24 MGP_PahariEiJ_G0031903 #25 MGP_PahariEiJ_G0031904 #26 MGP_PahariEiJ_G0031905 #27 Cpxcr1 (MGP_PahariEiJ_G0031906) #28 MGP_PahariEiJ_G0031907 #29 Pabpc5 (MGP_PahariEiJ_G0031908) #30 Pcdh11x (MGP_PahariEiJ_G0031909) #31 Nap1l3 (MGP_PahariEiJ_G0031910) #32 MGP_PahariEiJ_G0031911 #33 Dmtf1l (MGP_PahariEiJ_G0031912) #34 MGP_PahariEiJ_G0031913 #35 MGP_PahariEiJ_G0031914 #36 Cldn34c4 (MGP_PahariEiJ_G0031915) #37 Mus_A ANCESTRAL SPECIES 15 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888.e #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000163020 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 Mus_B ANCESTRAL SPECIES 14 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888.f #27 ENSGT00940000163888.e #27 ENSGT00390000003732 #28 ENSGT00940000163020.o ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000163020.p ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00390000005717.f.b #33 ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 Mouse MODERN SPECIES 37 Sh3bgrl (ENSMUSG00000031246) Gm6377 (ENSMUSG00000048621) Pou3f4 (ENSMUSG00000056854) #10 Cylc1 (ENSMUSG00000073001) #11 Rps6ka6 (ENSMUSG00000025665) #12 Hdx (ENSMUSG00000034551) #13 Gm45194 (ENSMUSG00000109156) Tex16 (ENSMUSG00000034555) #14 4933403O08Rik (ENSMUSG00000079460) #15 Apool (ENSMUSG00000025525) #16 Satl1 (ENSMUSG00000025527) #17 2010106E10Rik (ENSMUSG00000025528) #18 Zfp711 (ENSMUSG00000025529) #19 Pof1b (ENSMUSG00000034607) #20 Chm (ENSMUSG00000025531) #21 Dach2 (ENSMUSG00000025592) #22 Klhl4 (ENSMUSG00000025597) #23 Ube2dnl1 (ENSMUSG00000050435) #27 Ube2dnl2 (ENSMUSG00000047079) #27 Cpxcr1 (ENSMUSG00000072995) #28 H2ab2 (ENSMUSG00000082482) H2ab1 (ENSMUSG00000067441) Tgif2lx2 (ENSMUSG00000100194) #29 Tgif2lx1 (ENSMUSG00000100133) #29 Pabpc5 (ENSMUSG00000034732) #30 Pcdh11x (ENSMUSG00000034755) #31 H2ab3 (ENSMUSG00000083616) Nap1l3 (ENSMUSG00000055733) #32 Cldn34c1 (ENSMUSG00000079450) #33 Gm2411 (ENSMUSG00000118415) #33 ENSMUSG00000121514 Mus_C ANCESTRAL SPECIES 22 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888.f #27 ENSGT00940000163888.e #27 ENSGT00940000163020.o ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000156016.e #34 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f.a #37 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 spretus MODERN SPECIES 19 Sh3bgrl (MGP_SPRETEiJ_G0034510) Gm6377 (MGP_SPRETEiJ_G0034511) Pou3f4 (MGP_SPRETEiJ_G0034512) #10 Cylc1 (MGP_SPRETEiJ_G0034513) #11 MGP_SPRETEiJ_G0034514 Rps6ka6 (MGP_SPRETEiJ_G0034515) #12 MGP_SPRETEiJ_G0034516 Hdx (MGP_SPRETEiJ_G0034517) #13 4933403O08Rik (MGP_SPRETEiJ_G0034519) #15 Apool (MGP_SPRETEiJ_G0034520) #16 Satl1 (MGP_SPRETEiJ_G0034521) #17 2010106E10Rik (MGP_SPRETEiJ_G0034522) #18 Zfp711 (MGP_SPRETEiJ_G0034523) #19 Pof1b (MGP_SPRETEiJ_G0034524) #20 Chm (MGP_SPRETEiJ_G0034525) #21 Dach2 (MGP_SPRETEiJ_G0034526) #22 Klhl4 (MGP_SPRETEiJ_G0034527) #23 Ube2dnl1 (MGP_SPRETEiJ_G0034528) #27 Ube2dnl2 (MGP_SPRETEiJ_G0034529) #27 MGP_SPRETEiJ_G0034530 Cpxcr1 (MGP_SPRETEiJ_G0034531) #28 MGP_SPRETEiJ_G0034532 Pabpc5 (MGP_SPRETEiJ_G0034533) #30 Pcdh11x (MGP_SPRETEiJ_G0034534) #31 Nap1l3 (MGP_SPRETEiJ_G0034535) #32 MGP_SPRETEiJ_G0034536 #33 Dmtf1l (MGP_SPRETEiJ_G0034537) #34 MGP_SPRETEiJ_G0034538 #35 MGP_SPRETEiJ_G0034539 #36 Cldn34c4 (MGP_SPRETEiJ_G0034540) #37 Rbm31y (MGP_SPRETEiJ_G0034541) Steppe mouse MODERN SPECIES 2206 ENSMSIG00000026424 #22 Ryukyu mouse MODERN SPECIES 19 MGP_CAROLIEiJ_G0033345 Sh3bgrl (MGP_CAROLIEiJ_G0033346) Gm6377 (MGP_CAROLIEiJ_G0033347) Pou3f4 (MGP_CAROLIEiJ_G0033348) #10 Cylc1 (MGP_CAROLIEiJ_G0033349) #11 Rps6ka6 (MGP_CAROLIEiJ_G0033350) #12 Hdx (MGP_CAROLIEiJ_G0033351) #13 MGP_CAROLIEiJ_G0033352 #14 4933403O08Rik (MGP_CAROLIEiJ_G0033353) #15 Apool (MGP_CAROLIEiJ_G0033354) #16 Satl1 (MGP_CAROLIEiJ_G0033355) #17 2010106E10Rik (MGP_CAROLIEiJ_G0033356) #18 Zfp711 (MGP_CAROLIEiJ_G0033357) #19 Pof1b (MGP_CAROLIEiJ_G0033358) #20 Chm (MGP_CAROLIEiJ_G0033359) #21 Dach2 (MGP_CAROLIEiJ_G0033360) #22 Klhl4 (MGP_CAROLIEiJ_G0033361) #23 MGP_CAROLIEiJ_G0033362 #27 MGP_CAROLIEiJ_G0033363 #27 Cpxcr1 (MGP_CAROLIEiJ_G0033364) #28 MGP_CAROLIEiJ_G0033365 MGP_CAROLIEiJ_G0033366 #29 Pabpc5 (MGP_CAROLIEiJ_G0033367) #30 Pcdh11x (MGP_CAROLIEiJ_G0033368) #31 MGP_CAROLIEiJ_G0033369 MGP_CAROLIEiJ_G0033370 Nap1l3 (MGP_CAROLIEiJ_G0033371) #32 Dmtf1l (MGP_CAROLIEiJ_G0033372) #34 MGP_CAROLIEiJ_G0033373 #35 MGP_CAROLIEiJ_G0033374 #36 Cldn34c4 (MGP_CAROLIEiJ_G0033375) #37 Rat MODERN SPECIES 46 Pou3f4 (ENSRNOG00000002784) #10 Ankra2 (ENSRNOG00000016622) Cylc1 (ENSRNOG00000056740) #11 Rps6ka6 (ENSRNOG00000002592) #12 Hdx (ENSRNOG00000037799) #13 LOC100363993 (ENSRNOG00000067650) #14 Ube2d4l1 (ENSRNOG00000065297) #27 4933403O08Rik (ENSRNOG00000042394) #15 Apool (ENSRNOG00000004512) #16 Satl1 (ENSRNOG00000022476) #17 RGD1561958 (ENSRNOG00000022411) #18 Zfp711 (ENSRNOG00000022391) #19 Pof1b (ENSRNOG00000004795) #20 ENSRNOG00000064035 Chm (ENSRNOG00000000161) #21 Dach2 (ENSRNOG00000004869) #22 Klhl4 (ENSRNOG00000005215) #23 RGD1561582 (ENSRNOG00000065209) LOC120099227 (ENSRNOG00000029497) #27 M6pr-ps1 (ENSRNOG00000069568) AABR07039936.1 (ENSRNOG00000037770) H2ab3 (ENSRNOG00000029736) ENSRNOG00000070967 ENSRNOG00000064387 ENSRNOG00000063657 Tgif2lx2 (ENSRNOG00000029850) #29 Pabpc5 (ENSRNOG00000003354) #30 Pcdh11x (ENSRNOG00000069840) #31 Ventx (ENSRNOG00000021972) LOC685776 (ENSRNOG00000053601) Nap1l3 (ENSRNOG00000029087) #32 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00900000141059.y.b ##36 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00390000005717.f #37 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000156017 ENSGT00940000161429 #10 ENSGT01030000235438 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 Chinese hamster chok1gshd MODERN SPECIES 16 Pou3f4 (ENSCGRG00001011962) #10 ENSCGRG00001016928 Cylc1 (ENSCGRG00001014177) #11 Rps6ka6 (ENSCGRG00001019587) #12 Hdx (ENSCGRG00001001736) #13 Tex16 (ENSCGRG00001020189) #14 ENSCGRG00001007339 #27 4933403O08Rik (ENSCGRG00001018687) #15 ENSCGRG00001000206 #16 ENSCGRG00001000138 #17 2010106E10Rik (ENSCGRG00001018464) #18 Zfp711 (ENSCGRG00001010150) #19 Pof1b (ENSCGRG00001015632) #20 Chm (ENSCGRG00001006793) #21 Tpm3-rs7 (ENSCGRG00001006979) Dach2 (ENSCGRG00001023530) #22 ENSCGRG00001006882 Klhl4 (ENSCGRG00001016767) #23 ENSCGRG00001004881 #27 ENSCGRG00001010570 #36 ENSCGRG00001003703 #37 ENSCGRG00001006460 ENSCGRG00001009434 Diaph2 (ENSCGRG00001018454) ENSCGRG00001023968 ENSCGRG00001022345 Pcdh19 (ENSCGRG00001014584) Tnmd (ENSCGRG00001002116) Tspan6 (ENSCGRG00001023806) Srpx2 (ENSCGRG00001015475) Sytl4 (ENSCGRG00001016125) Golden Hamster MODERN SPECIES 758 Pou3f4 (ENSMAUG00000016709) #10 ENSMAUG00000007023 Rps6ka6 (ENSMAUG00000001357) #12 Hdx (ENSMAUG00000000922) #13 ENSMAUG00000018096 Tex16 (ENSMAUG00000006556) #14 ENSMAUG00000016626 #27 4933403O08Rik (ENSMAUG00000009376) #15 Apool (ENSMAUG00000014048) #16 Satl1 (ENSMAUG00000016111) #17 2010106E10Rik (ENSMAUG00000012995) #18 Zfp711 (ENSMAUG00000012277) #19 Pof1b (ENSMAUG00000012853) #20 ENSMAUG00000016526 Chm (ENSMAUG00000017065) #21 Dach2 (ENSMAUG00000010782) #22 ENSMAUG00000016494 Klhl4 (ENSMAUG00000014371) #23 Cricetidae_B ANCESTRAL SPECIES 47 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00900000141059.y.b ##36 ENSGT00900000141059.y.a.a #35 ENSGT00900000141059.y.a.b #36 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Northern American deer mouse MODERN SPECIES 475 Gm6377 (ENSPEMG00000023246) ENSPEMG00000025843 Pou3f4 (ENSPEMG00000003663) #10 Cylc1 (ENSPEMG00000017301) #11 Rps6ka6 (ENSPEMG00000015736) #12 Hdx (ENSPEMG00000011250) #13 4933403O08Rik (ENSPEMG00000025473) #15 ENSPEMG00000022787 Apool (ENSPEMG00000024018) #16 ENSPEMG00000026639 #17 2010106E10Rik (ENSPEMG00000015852) #18 Zfp711 (ENSPEMG00000028793) #19 Pof1b (ENSPEMG00000023660) #20 Chm (ENSPEMG00000019556) #21 ENSPEMG00000025540 Dach2 (ENSPEMG00000011157) #22 Gm773 (ENSPEMG00000019841) Klhl4 (ENSPEMG00000019669) #23 ENSPEMG00000029835 #27 Cpxcr1 (ENSPEMG00000026829) #28 ENSPEMG00000025979 ENSPEMG00000014179 ENSPEMG00000024456 #29 ENSPEMG00000014414 ENSPEMG00000023744 Pabpc5 (ENSPEMG00000000171) #30 Pcdh11x (ENSPEMG00000010745) #31 Nap1l3 (ENSPEMG00000021317) #32 ENSPEMG00000020890 ENSPEMG00000031172 ENSPEMG00000015049 Prairie vole MODERN SPECIES 96 Pou3f4 (ENSMOCG00000001063) #10 Cylc1 (ENSMOCG00000002144) #11 Rps6ka6 (ENSMOCG00000000070) #12 Hdx (ENSMOCG00000016956) #13 ENSMOCG00000012225 Tex16 (ENSMOCG00000016239) #14 4933403O08Rik (ENSMOCG00000010080) #15 Apool (ENSMOCG00000019380) #16 Satl1 (ENSMOCG00000003777) #17 2010106E10Rik (ENSMOCG00000017647) #18 Zfp711 (ENSMOCG00000003046) #19 Pof1b (ENSMOCG00000014928) #20 ENSMOCG00000000578 ENSMOCG00000015094 Chm (ENSMOCG00000020359) #21 Dach2 (ENSMOCG00000011776) #22 Klhl4 (ENSMOCG00000008772) #23 ENSMOCG00000014742 ENSMOCG00000013238 Upper Galilee mountains blind mole rat MODERN SPECIES 503 ENSNGAG00000021355 ENSNGAG00000018332 Sh3bgrl (ENSNGAG00000008553) ENSNGAG00000023856 ENSNGAG00000018747 Pou3f4 (ENSNGAG00000013024) #10 Rps6ka6 (ENSNGAG00000013321) #12 Hdx (ENSNGAG00000022021) #13 ENSNGAG00000020473 ENSNGAG00000007069 #14 4933403O08Rik (ENSNGAG00000001929) #15 Apool (ENSNGAG00000023555) #16 Zfp711 (ENSNGAG00000015585) #19 Pof1b (ENSNGAG00000024266) #20 Chm (ENSNGAG00000011917) #21 Dach2 (ENSNGAG00000023673) #22 Klhl4 (ENSNGAG00000023295) #23 ENSNGAG00000021206 Lesser Egyptian jerboa MODERN SPECIES 173 Brwd3 (ENSJJAG00000022949) ENSJJAG00000021895 ENSJJAG00000022040 Pou3f4 (ENSJJAG00000012452) #10 ENSJJAG00000022322 ENSJJAG00000022439 ENSJJAG00000022602 Rps6ka6 (ENSJJAG00000023727) #12 Hdx (ENSJJAG00000004610) #13 4933403O08Rik (ENSJJAG00000005323) #15 Apool (ENSJJAG00000007396) #16 ENSJJAG00000009900 #18 Zfp711 (ENSJJAG00000010450) #19 Pof1b (ENSJJAG00000010917) #20 Chm (ENSJJAG00000012459) #21 Dach2 (ENSJJAG00000014515) #22 ENSJJAG00000000038 Klhl4 (ENSJJAG00000000299) #23 Kangaroo rat MODERN SPECIES 399 Brwd3 (ENSDORG00000003314) Sh3bgrl (ENSDORG00000029190) Pou3f4 (ENSDORG00000006273) #10 Rps6ka6 (ENSDORG00000008579) #12 Hdx (ENSDORG00000012098) #13 ENSDORG00000029968 4933403O08Rik (ENSDORG00000027967) #15 Apool (ENSDORG00000011045) #16 Zfp711 (ENSDORG00000012010) #19 Pof1b (ENSDORG00000012012) #20 ENSDORG00000026546 Chm (ENSDORG00000011463) #21 ENSDORG00000029836 Dach2 (ENSDORG00000005499) #22 Klhl4 (ENSDORG00000013698) #23 ENSDORG00000028193 ENSDORG00000023362 Pcdh11x (ENSDORG00000011507) #31 ENSDORG00000029858 ENSDORG00000029549 Nap1l3 (ENSDORG00000025524) #32 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Sciuridae ANCESTRAL SPECIES 35 ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888.n #27 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00430000032886 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Marmotini ANCESTRAL SPECIES 78 ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00390000002792.cb #14 ENSGT00940000163888.n #27 ENSGT00940000163888.m #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000153412.C.c ENSGT00950000183164.C ENSGT00950000183164.D ENSGT00940000153412.A.v ENSGT00950000183164.B.h ENSGT00950000183164.E ENSGT00940000162932 ENSGT00940000155193.a.a.f ENSGT00940000155762.ac ENSGT00390000007539.i.b.b ENSGT00940000153412.A.u Marmotini_b ANCESTRAL SPECIES 121 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT01000000216433 ENSGT00390000002792.cb #14 ENSGT00940000163888.n #27 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000153412.C.c ENSGT00950000183164.C.g ENSGT00950000183164.D ENSGT00940000153412.A.v ENSGT00950000183164.B.h ENSGT00950000183164.E ENSGT00940000162932 ENSGT00940000155193.a.a.f ENSGT00940000155762.ac Arctic ground squirrel MODERN SPECIES 545 DACH2 (ENSUPAG00010005031) #22 Squirrel MODERN SPECIES 147 BRWD3 (ENSSTOG00000004508) ENSSTOG00000030741 SH3BGRL (ENSSTOG00000013216) ENSSTOG00000026305 POU3F4 (ENSSTOG00000026467) #10 RPS6KA6 (ENSSTOG00000002290) #12 HDX (ENSSTOG00000015440) #13 ENSSTOG00000033550 ENSSTOG00000027226 #27 ENSSTOG00000023046 #15 APOOL (ENSSTOG00000005067) #16 ENSSTOG00000029673 #18 ZNF711 (ENSSTOG00000008918) #19 POF1B (ENSSTOG00000011717) #20 CHM (ENSSTOG00000022111) #21 DACH2 (ENSSTOG00000006685) #22 ENSSTOG00000029794 ENSSTOG00000008144 TCEAL7 (ENSSTOG00000005945) ENSSTOG00000016142 ENSSTOG00000027481 ENSSTOG00000024937 TCEAL8 (ENSSTOG00000004386) BEX4 (ENSSTOG00000004130) ENSSTOG00000031997 ENSSTOG00000030112 Alpin marmot MODERN SPECIES 78 ENSMMMG00000011351 ENSMMMG00000011334 SH3BGRL (ENSMMMG00000011328) ENSMMMG00000011323 ENSMMMG00000011315 ENSMMMG00000011302 CYLC1 (ENSMMMG00000011257) #11 RPS6KA6 (ENSMMMG00000011222) #12 HDX (ENSMMMG00000011191) #13 ENSMMMG00000011171 #14 APOOL (ENSMMMG00000011126) #16 ENSMMMG00000011112 #17 ENSMMMG00000011100 #19 POF1B (ENSMMMG00000011075) #20 CHM (ENSMMMG00000010964) #21 DACH2 (ENSMMMG00000010801) #22 BEX3 (ENSMMMG00000010779) TCEAL7 (ENSMMMG00000010775) ENSMMMG00000010770 ENSMMMG00000010766 BEX4 (ENSMMMG00000010757) ENSMMMG00000010744 ENSMMMG00000010721 NXF3 (ENSMMMG00000010686) ENSMMMG00000010684 ENSMMMG00000010680 ENSMMMG00000010671 BEX5 (ENSMMMG00000010668) ENSMMMG00000010629 #9 ENSMMMG00000010564 Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005010323 ENSSVLG00005024677 POU3F4 (ENSSVLG00005024640) #10 CYLC1 (ENSSVLG00005024602) #11 RPS6KA6 (ENSSVLG00005024442) #12 HDX (ENSSVLG00005024346) #13 ENSSVLG00005024315 #14 ENSSVLG00005024295 #27 ENSSVLG00005024287 APOOL (ENSSVLG00005024251) #16 ENSSVLG00005024204 #17 ENSSVLG00005024140 #18 ZNF711 (ENSSVLG00005024106) #19 POF1B (ENSSVLG00005023983) #20 ENSSVLG00005023891 #21 DACH2 (ENSSVLG00005023583) #22 KLHL4 (ENSSVLG00005023401) #23 ENSSVLG00005023341 #27 ENSSVLG00005023323 ENSSVLG00005023291 CPXCR1 (ENSSVLG00005023282) #28 ENSSVLG00005023265 ENSSVLG00005023244 ENSSVLG00005023178 ENSSVLG00005023139 #29 ENSSVLG00005023114 ENSSVLG00005023085 PABPC5 (ENSSVLG00005023058) #30 ENSSVLG00005022794 #31 ENSSVLG00005022703 NAP1L3 (ENSSVLG00005022672) #32 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00730000111097.e ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f ENSGT00940000154325.a ENSGT00390000013235.a Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00950000183115.b.b ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00730000111097.e Hystricomorpha_b ANCESTRAL SPECIES 113 ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00730000111097.e Long-tailed chinchilla MODERN SPECIES 232 CHM (ENSCLAG00000000388) #21 ENSCLAG00000000470 DACH2 (ENSCLAG00000000583) #22 KLHL4 (ENSCLAG00000000423) #23 ENSCLAG00000000558 #27 ENSCLAG00000017417 #27 PABPC5 (ENSCLAG00000000647) #30 ENSCLAG00000000772 #31 ENSCLAG00000000860 Degu MODERN SPECIES 144 SH3BGRL (ENSODEG00000003326) ENSODEG00000003422 ENSODEG00000003430 POU3F4 (ENSODEG00000019055) #10 RPS6KA6 (ENSODEG00000003590) #12 HDX (ENSODEG00000000832) #13 ENSODEG00000000866 APOOL (ENSODEG00000000970) #16 ENSODEG00000000990 ENSODEG00000001004 #18 ZNF711 (ENSODEG00000001046) #19 POF1B (ENSODEG00000001140) #20 ENSODEG00000001180 CHM (ENSODEG00000001208) #21 ENSODEG00000018560 DACH2 (ENSODEG00000000554) #22 ENSODEG00000000657 ENSODEG00000000679 KLHL4 (ENSODEG00000000734) #23 ENSODEG00000000810 ENSODEG00000000827 ENSODEG00000000850 ENSODEG00000000697 #31 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000050061 ENSHGLG00000050316 #10 ENSHGLG00000040597 ENSHGLG00000037398 RPS6KA6 (ENSHGLG00000004511) #12 HDX (ENSHGLG00000003945) #13 ENSHGLG00000045926 ENSHGLG00000035970 APOOL (ENSHGLG00000003635) #16 ENSHGLG00000003516 #18 ZNF711 (ENSHGLG00000003254) #19 POF1B (ENSHGLG00000003095) #20 ENSHGLG00000033497 ENSHGLG00000041349 CHM (ENSHGLG00000002772) #21 DACH2 (ENSHGLG00000008869) #22 ENSHGLG00000020892 ENSHGLG00000034462 ENSHGLG00000002543 #23 ENSHGLG00000049697 ENSHGLG00000014839 ENSHGLG00000046264 ENSHGLG00000000569 ENSHGLG00000051013 ENSHGLG00000000237 ENSHGLG00000044864 ENSHGLG00000032760 ENSHGLG00000020027 ENSHGLG00000000267 #31 ENSHGLG00000035133 PABPC5 (ENSHGLG00000047468) #30 Lagomorpha ANCESTRAL SPECIES 95 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00940000163888 #27 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e Rabbit MODERN SPECIES 1401 ENSOCUG00000021892 POU3F4 (ENSOCUG00000010927) #10 CYLC1 (ENSOCUG00000005157) #11 ENSOCUG00000006428 #12 HDX (ENSOCUG00000000903) #13 ENSOCUG00000027774 #15 ENSOCUG00000031808 #27 APOOL (ENSOCUG00000003369) #16 ENSOCUG00000034512 #18 ENSOCUG00000010085 #17 ZNF711 (ENSOCUG00000023926) #19 POF1B (ENSOCUG00000008812) #20 ENSOCUG00000025426 ENSOCUG00000036844 CHM (ENSOCUG00000012819) #21 DACH2 (ENSOCUG00000004513) #22 ENSOCUG00000023763 ENSOCUG00000001826 #23 ENSOCUG00000029146 ENSOCUG00000032789 #27 ENSOCUG00000035409 ENSOCUG00000005772 ENSOCUG00000014565 #28 ENSOCUG00000032103 ENSOCUG00000001978 ENSOCUG00000009298 ENSOCUG00000010616 ENSOCUG00000014194 ENSOCUG00000027741 #29 ENSOCUG00000023356 ENSOCUG00000035263 Tree shrew MODERN SPECIES 1169 DACH2 (ENSTBEG00000008598) #22 Primates ANCESTRAL SPECIES 19 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00530000065541 ENSGT00940000157822 ENSGT01050000248440 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Haplorrhini ANCESTRAL SPECIES 18 ENSGT00940000166733 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT01050000248440 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Simiiformes ANCESTRAL SPECIES 9 ENSGT00940000166733 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT01050000248440 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Catarrhini ANCESTRAL SPECIES 12 ENSGT00940000166733 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 Hominoidea ANCESTRAL SPECIES 16 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000163054 ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Hominidae ANCESTRAL SPECIES 8 ENSGT00940000161206 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848.c #29 ENSGT00940000154977.l.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000163054 ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Homo/Pan/Gorilla group ANCESTRAL SPECIES 9 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000153314.b ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848.c #29 ENSGT00940000154977.l.b.a ENSGT00940000153284.a.h.i.b ENSGT00940000162668 #30 ENSGT00940000158335.c #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000163054 ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Homo/Pan group ANCESTRAL SPECIES 9 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000153314.b ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848.c #29 ENSGT00940000154977.l.b.a ENSGT00940000153284.a.h.i.b ENSGT00940000165485 ENSGT00940000154977.l.b.b ENSGT00940000162668 #30 ENSGT00940000158335.c #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000163054 ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 Pan ANCESTRAL SPECIES 6 ENSGT00950000183107.a.b.b ENSGT00950000182869.e.a.b.sb.b.a.a.a ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000153314.b ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00950000183119.a.e.a.d.a.a ENSGT00390000003732 #28 ENSGT00940000165485 ENSGT00940000154977.l.b.b ENSGT00940000162668 #30 ENSGT00940000158335.c #31 ENSGT00950000182869.e.a.b.sb.b.a.a.b.b ENSGT00940000153889.e.a.a ENSGT00940000155206.d.b ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000163054 ENSGT00940000157822 ENSGT00940000153239.B.i.a.b Bonobo MODERN SPECIES 369 SH3BGRL (ENSPPAG00000035293) ENSPPAG00000037558 ENSPPAG00000040389 POU3F4 (ENSPPAG00000017170) #10 ENSPPAG00000043882 CYLC1 (ENSPPAG00000019947) #11 RPS6KA6 (ENSPPAG00000010461) #12 HDX (ENSPPAG00000031927) #13 APOOL (ENSPPAG00000037582) #16 ENSPPAG00000033891 #17 ZNF711 (ENSPPAG00000038129) #19 POF1B (ENSPPAG00000033485) #20 ENSPPAG00000028498 CHM (ENSPPAG00000034301) #21 ENSPPAG00000024013 ENSPPAG00000036042 #22 KLHL4 (ENSPPAG00000043431) #23 ENSPPAG00000026574 CPXCR1 (ENSPPAG00000016441) #28 ENSPPAG00000038346 ENSPPAG00000041507 PABPC5 (ENSPPAG00000007378) #30 ENSPPAG00000043443 #31 ENSPPAG00000030962 ENSPPAG00000040878 ENSPPAG00000003031 ENSPPAG00000007354 NAP1L3 (ENSPPAG00000019923) #32 FAM133A (ENSPPAG00000017635) ENSPPAG00000038822 DIAPH2 (ENSPPAG00000040909) Chimpanzee MODERN SPECIES 972 HMGN5 (ENSPTRG00000022527) SH3BGRL (ENSPTRG00000022061) ENSPTRG00000047666 POU3F4 (ENSPTRG00000040705) #10 CYLC1 (ENSPTRG00000022063) #11 RPS6KA6 (ENSPTRG00000022064) #12 HDX (ENSPTRG00000022065) #13 ENSPTRG00000048780 APOOL (ENSPTRG00000022067) #16 ENSPTRG00000043670 ENSPTRG00000022068 #17 ZNF711 (ENSPTRG00000022069) #19 POF1B (ENSPTRG00000022070) #20 CHM (ENSPTRG00000022071) #21 ENSPTRG00000052049 DACH2 (ENSPTRG00000022073) #22 KLHL4 (ENSPTRG00000022075) #23 ENSPTRG00000049218 CPXCR1 (ENSPTRG00000022076) #28 ENSPTRG00000044589 ENSPTRG00000045302 PABPC5 (ENSPTRG00000022078) #30 ENSPTRG00000022079 #31 ENSPTRG00000043870 ENSPTRG00000043794 NAP1L3 (ENSPTRG00000022080) #32 FAM133A (ENSPTRG00000044529) ENSPTRG00000033789 ENSPTRG00000048048 DIAPH2 (ENSPTRG00000022082) ENSPTRG00000043192 Human MODERN SPECIES 1827 ITM2A (ENSG00000078596) TBX22 (ENSG00000122145) TENT5D (ENSG00000174016) BRWD3 (ENSG00000165288) HMGN5 (ENSG00000198157) SH3BGRL (ENSG00000131171) POU3F4 (ENSG00000196767) #10 CYLC1 (ENSG00000183035) #11 RPS6KA6 (ENSG00000072133) #12 HDX (ENSG00000165259) #13 APOOL (ENSG00000155008) #16 SATL1 (ENSG00000184788) #17 ZNF711 (ENSG00000147180) #19 POF1B (ENSG00000124429) #20 CHM (ENSG00000188419) #21 DACH2 (ENSG00000126733) #22 KLHL4 (ENSG00000102271) #23 CPXCR1 (ENSG00000147183) #28 TGIF2LX (ENSG00000153779) #29 PABPC5 (ENSG00000174740) #30 PCDH11X (ENSG00000102290) #31 NAP1L3 (ENSG00000186310) #32 FAM133A (ENSG00000179083) DIAPH2 (ENSG00000147202) RPA4 (ENSG00000204086) PCDH19 (ENSG00000165194) TNMD (ENSG00000000005) TSPAN6 (ENSG00000000003) SRPX2 (ENSG00000102359) SYTL4 (ENSG00000102362) CSTF2 (ENSG00000101811) Gorilla MODERN SPECIES 523 ENSGGOG00000037044 ENSGGOG00000039492 HMGN5 (ENSGGOG00000016479) SH3BGRL (ENSGGOG00000009664) ENSGGOG00000025534 POU3F4 (ENSGGOG00000027353) #10 CYLC1 (ENSGGOG00000001587) #11 RPS6KA6 (ENSGGOG00000016474) #12 HDX (ENSGGOG00000005551) #13 ENSGGOG00000016329 #16 SATL1 (ENSGGOG00000016333) #17 ZNF711 (ENSGGOG00000006110) #19 POF1B (ENSGGOG00000016908) #20 CHM (ENSGGOG00000022912) #21 ENSGGOG00000040803 DACH2 (ENSGGOG00000007231) #22 KLHL4 (ENSGGOG00000002307) #23 RPSA (ENSGGOG00000036643) CPXCR1 (ENSGGOG00000026865) #28 ENSGGOG00000036979 ENSGGOG00000037634 PABPC5 (ENSGGOG00000007622) #30 ENSGGOG00000008584 #31 ENSGGOG00000042618 ENSGGOG00000025897 ENSGGOG00000039790 ENSGGOG00000025902 NAP1L3 (ENSGGOG00000016989) #32 FAM133A (ENSGGOG00000043974) ENSGGOG00000038270 DIAPH2 (ENSGGOG00000002859) Orangutan MODERN SPECIES 242 GPR174 (ENSPPYG00000020502) ITM2A (ENSPPYG00000020503) TBX22 (ENSPPYG00000020504) BRWD3 (ENSPPYG00000020507) HMGN5 (ENSPPYG00000020508) SH3BGRL (ENSPPYG00000020509) POU3F4 (ENSPPYG00000020510) #10 CYLC1 (ENSPPYG00000020512) #11 RPS6KA6 (ENSPPYG00000020513) #12 HDX (ENSPPYG00000020514) #13 APOOL (ENSPPYG00000020516) #16 SATL1 (ENSPPYG00000020517) #17 ZNF711 (ENSPPYG00000020518) #19 POF1B (ENSPPYG00000020519) #20 CHM (ENSPPYG00000020520) #21 DACH2 (ENSPPYG00000020521) #22 KLHL4 (ENSPPYG00000020523) #23 TGIF2LX (ENSPPYG00000020525) #29 PABPC5 (ENSPPYG00000020526) #30 ENSPPYG00000020527 #31 ENSPPYG00000035760 NAP1L3 (ENSPPYG00000020530) #32 DIAPH2 (ENSPPYG00000020532) ENSPPYG00000041050 PCDH19 (ENSPPYG00000020536) TNMD (ENSPPYG00000020537) TSPAN6 (ENSPPYG00000020538) SRPX2 (ENSPPYG00000020539) SYTL4 (ENSPPYG00000020540) CSTF2 (ENSPPYG00000020541) NOX1 (ENSPPYG00000020542) Gibbon MODERN SPECIES 449 ENSNLEG00000034470 ENSNLEG00000034864 HMGN5 (ENSNLEG00000034708) SH3BGRL (ENSNLEG00000002464) ENSNLEG00000028823 ENSNLEG00000032492 CYLC1 (ENSNLEG00000002527) #11 RPS6KA6 (ENSNLEG00000002544) #12 HDX (ENSNLEG00000002624) #13 APOOL (ENSNLEG00000002634) #16 ZNF711 (ENSNLEG00000002656) #19 POF1B (ENSNLEG00000002694) #20 ENSNLEG00000032608 CHM (ENSNLEG00000002762) #21 ENSNLEG00000027890 DACH2 (ENSNLEG00000002793) #22 ENSNLEG00000002822 KLHL4 (ENSNLEG00000002824) #23 CPXCR1 (ENSNLEG00000002894) #28 ENSNLEG00000027997 ENSNLEG00000035924 ENSNLEG00000036286 PABPC5 (ENSNLEG00000035086) #30 ENSNLEG00000029321 ENSNLEG00000029399 ENSNLEG00000034978 NAP1L3 (ENSNLEG00000000881) #32 FAM133A (ENSNLEG00000019038) ENSNLEG00000019052 DIAPH2 (ENSNLEG00000000884) ENSNLEG00000030185 Cercopithecidae ANCESTRAL SPECIES 19 ENSGT00940000166733 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000153284.a.h.i.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Cercopithecinae ANCESTRAL SPECIES 13 ENSGT00940000166733 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000153284.a.h.i.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Vervet Monkey MODERN SPECIES 203 TENT5D (ENSCSAG00000000078) ENSCSAG00000010700 BRWD3 (ENSCSAG00000010659) ENSCSAG00000000076 HMGN5 (ENSCSAG00000010621) SH3BGRL (ENSCSAG00000010614) ENSCSAG00000010588 POU3F4 (ENSCSAG00000000074) #10 CYLC1 (ENSCSAG00000010571) #11 RPS6KA6 (ENSCSAG00000010555) #12 HDX (ENSCSAG00000010546) #13 SATL1 (ENSCSAG00000010536) #17 ZNF711 (ENSCSAG00000010527) #19 ENSCSAG00000010519 #20 CHM (ENSCSAG00000010508) #21 DACH2 (ENSCSAG00000010460) #22 KLHL4 (ENSCSAG00000010443) #23 ENSCSAG00000000071 CPXCR1 (ENSCSAG00000010435) #28 TGIF2LX (ENSCSAG00000000068) #29 PABPC5 (ENSCSAG00000000065) #30 ENSCSAG00000010424 #31 NAP1L3 (ENSCSAG00000000062) #32 FAM133A (ENSCSAG00000000060) DIAPH2 (ENSCSAG00000010417) ENSCSAG00000000058 PCDH19 (ENSCSAG00000010397) TNMD (ENSCSAG00000010392) TSPAN6 (ENSCSAG00000010385) SRPX2 (ENSCSAG00000010378) SYTL4 (ENSCSAG00000010368) Cercopithecinae_a ANCESTRAL SPECIES 11 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00910000148056 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000165485 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000153284.a.h.i.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000155683.l.a ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 Macaca ANCESTRAL SPECIES 13 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00910000148056 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a.b #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000164980.c.a ENSGT00940000165485 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000153284.a.h.i.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00910000146851.a ENSGT00530000063516.a.a.c.b.y.a.c ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 Pig-tailed macaque MODERN SPECIES 142 ZNF711 (ENSMNEG00000018317) #19 POF1B (ENSMNEG00000033839) #20 CHM (ENSMNEG00000042741) #21 ENSMNEG00000031274 ENSMNEG00000032538 ENSMNEG00000037714 DACH2 (ENSMNEG00000028817) #22 KLHL4 (ENSMNEG00000019685) #23 ENSMNEG00000006868 ENSMNEG00000037390 CPXCR1 (ENSMNEG00000031654) #28 ENSMNEG00000029206 ENSMNEG00000040522 TGIF2LY (ENSMNEG00000011902) #29 ENSMNEG00000004012 ENSMNEG00000031091 PABPC5 (ENSMNEG00000037604) #30 ENSMNEG00000029065 ENSMNEG00000042483 ENSMNEG00000034962 #31 ENSMNEG00000035898 ENSMNEG00000034802 Macaca_a ANCESTRAL SPECIES 11 ENSGT00950000183107.a.b.b ENSGT00390000000153.l.b.c.b.b.s ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a.b #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00950000183123.g.a.b.b.s.a ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT01100000263543.a.g.b.b.b.b.c.a.b.b ENSGT00940000163848 #29 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00910000146851.a ENSGT00940000157822 ENSGT00940000153239.B.i.a.b ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Rhesus MODERN SPECIES 327 SH3BGRL (ENSMMUG00000001689) ENSMMUG00000051358 POU3F4 (ENSMMUG00000003112) #10 CYLC1 (ENSMMUG00000022081) #11 RPS6KA6 (ENSMMUG00000020532) #12 HDX (ENSMMUG00000020536) #13 ENSMMUG00000058186 APOOL (ENSMMUG00000004335) #16 SATL1 (ENSMMUG00000004336) #17 ENSMMUG00000007887 ZNF711 (ENSMMUG00000013603) #19 POF1B (ENSMMUG00000013604) #20 CHM (ENSMMUG00000016776) #21 ENSMMUG00000061274 ENSMMUG00000045262 DACH2 (ENSMMUG00000016777) #22 ENSMMUG00000052264 KLHL4 (ENSMMUG00000019383) #23 ENSMMUG00000055147 TGIF2LX (ENSMMUG00000009258) #29 ENSMMUG00000065111 ENSMMUG00000012777 #31 ENSMMUG00000019594 NAP1L3 (ENSMMUG00000012702) #32 FAM133A (ENSMMUG00000000379) ENSMMUG00000051872 ENSMMUG00000062616 ENSMMUG00000062471 DIAPH2 (ENSMMUG00000020862) ENSMMUG00000000448 PCDH19 (ENSMMUG00000011078) Crab-eating macaque MODERN SPECIES 175 ENSMFAG00000048140 CYLC1 (ENSMFAG00000044830) #11 RPS6KA6 (ENSMFAG00000045848) #12 HDX (ENSMFAG00000003281) #13 ENSMFAG00000056508 ENSMFAG00000048579 ENSMFAG00000063039 APOOL (ENSMFAG00000042547) #16 SATL1 (ENSMFAG00000042054) #17 ENSMFAG00000043804 ZNF711 (ENSMFAG00000037179) #19 ENSMFAG00000049766 ENSMFAG00000061426 CHM (ENSMFAG00000042140) #21 ENSMFAG00000048139 ENSMFAG00000004743 #22 ENSMFAG00000063718 ENSMFAG00000058989 KLHL4 (ENSMFAG00000039559) #23 ENSMFAG00000050078 CPXCR1 (ENSMFAG00000044441) #28 ENSMFAG00000021300 TGIF2LX (ENSMFAG00000036400) #29 ENSMFAG00000062587 ENSMFAG00000030468 #31 ENSMFAG00000043378 ENSMFAG00000005442 ENSMFAG00000030696 ENSMFAG00000050987 ENSMFAG00000003643 ENSMFAG00000049512 Cercopithecinae_b ANCESTRAL SPECIES 34 ENSGT00530000063666.a.m.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00940000154301.ab ENSGT00960000186717.a ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000164980.c.a ENSGT00950000183119.a.e.a.d.a.a ENSGT00390000003732 #28 ENSGT00940000165485 ENSGT00940000163848 #29 ENSGT00940000154977.l.b ENSGT00940000153284.a.h.i.b ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000155683.l.a ENSGT00940000154301.`b.b ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00910000146851.a Cercopithecinae_d ANCESTRAL SPECIES 220 ENSGT00530000063666.a.m.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00940000154911.v ENSGT00940000154301.ab ENSGT00960000186717.a ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000164980.c.a Sooty mangabey MODERN SPECIES 297 ENSCATG00000031868 ENSCATG00000033648 SATL1 (ENSCATG00000029793) #17 ENSCATG00000033124 #16 ZNF711 (ENSCATG00000008131) #19 POF1B (ENSCATG00000041709) #20 CHM (ENSCATG00000032562) #21 ENSCATG00000020985 ENSCATG00000043405 DACH2 (ENSCATG00000037223) #22 KLHL4 (ENSCATG00000035229) #23 ENSCATG00000036857 Drill MODERN SPECIES 144 DACH2 (ENSMLEG00000028957) #22 Olive baboon MODERN SPECIES 792 ENSPANG00000044073 ENSPANG00000048854 ENSPANG00000049450 ENSPANG00000044225 POU3F4 (ENSPANG00000019402) #10 ENSPANG00000040401 ENSPANG00000048271 ENSPANG00000013859 #11 RPS6KA6 (ENSPANG00000012943) #12 HDX (ENSPANG00000014327) #13 SATL1 (ENSPANG00000008507) #17 ENSPANG00000012801 #16 CHM (ENSPANG00000016326) #21 POF1B (ENSPANG00000012903) #20 ZNF711 (ENSPANG00000019448) #19 DACH2 (ENSPANG00000015473) #22 ENSPANG00000041065 KLHL4 (ENSPANG00000025093) #23 ENSPANG00000044969 ENSPANG00000037666 PABPC5 (ENSPANG00000018282) #30 ENSPANG00000044930 ENSPANG00000041332 ENSPANG00000010796 #31 ENSPANG00000010668 ENSPANG00000051141 NAP1L3 (ENSPANG00000015472) #32 FAM133A (ENSPANG00000019783) ENSPANG00000034674 ENSPANG00000046819 ENSPANG00000038140 Rhinopithecus ANCESTRAL SPECIES ENSGT00390000001134.b #22 Golden snub-nosed monkey MODERN SPECIES 3239 ENSRROG00000030621 #22 Black snub-nosed monkey MODERN SPECIES 796 ENSRBIG00000040988 #22 Platyrrhini ANCESTRAL SPECIES 33 ENSGT00940000155436.p ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT01030000235438 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a.e.a #16 ENSGT00530000063666.a.m.a.e.b #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000007879.b ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000154652.f ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00390000017606.a.a.i.b.a.a.e.b ENSGT00940000157822 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Cebidae ANCESTRAL SPECIES 18 ENSGT00940000161206 ENSGT00850000133588 ENSGT00940000155436.p ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT01030000235438 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.m.a.e.a #16 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000007879.b ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000154652.f ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00390000017606.a.a.i.b.a.a.e.b ENSGT00940000157822 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 Cebidae_a ANCESTRAL SPECIES 127 ENSGT00530000063666.a.m.a.e.b #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000007879.b ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000154652.f ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e Capuchin MODERN SPECIES 468 ENSCCAG00000033695 ENSCCAG00000028344 DACH2 (ENSCCAG00000026248) #22 ENSCCAG00000025676 KLHL4 (ENSCCAG00000031014) #23 Bolivian squirrel monkey MODERN SPECIES 147 ZNF711 (ENSSBOG00000030572) #19 POF1B (ENSSBOG00000028149) #20 CHM (ENSSBOG00000027934) #21 ENSSBOG00000024341 ENSSBOG00000029520 DACH2 (ENSSBOG00000030052) #22 KLHL4 (ENSSBOG00000022724) #23 ENSSBOG00000025365 CPXCR1 (ENSSBOG00000024206) #28 ENSSBOG00000020396 ENSSBOG00000018878 ENSSBOG00000021446 #29 PABPC5 (ENSSBOG00000008658) #30 ENSSBOG00000024639 ENSSBOG00000034237 #31 NAP1L3 (ENSSBOG00000023902) #32 FAM133A (ENSSBOG00000008352) Marmoset MODERN SPECIES 78 ENSCJAG00000003568 ENSCJAG00000057987 ENSCJAG00000068028 POU3F4 (ENSCJAG00000002526) #10 CYLC1 (ENSCJAG00000069361) #11 ENSCJAG00000077909 RPS6KA6 (ENSCJAG00000008317) #12 HDX (ENSCJAG00000008295) #13 ENSCJAG00000084688 ENSCJAG00000076835 ENSCJAG00000008249 #16 ZNF711 (ENSCJAG00000010311) #19 POF1B (ENSCJAG00000010342) #20 ENSCJAG00000080789 CHM (ENSCJAG00000010392) #21 DACH2 (ENSCJAG00000010422) #22 KLHL4 (ENSCJAG00000010479) #23 ENSCJAG00000073801 ENSCJAG00000076138 ENSCJAG00000080852 ENSCJAG00000077709 ENSCJAG00000041536 ENSCJAG00000087079 ENSCJAG00000061435 ENSCJAG00000081922 ENSCJAG00000060149 ENSCJAG00000057658 ENSCJAG00000077358 PABPC5 (ENSCJAG00000003665) #30 ENSCJAG00000003672 #31 ENSCJAG00000054882 Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 1179 ZNF711 (ENSANAG00000027967) #19 POF1B (ENSANAG00000027640) #20 CHM (ENSANAG00000025422) #21 ENSANAG00000029697 #22 KLHL4 (ENSANAG00000028429) #23 ENSANAG00000021853 CPXCR1 (ENSANAG00000025456) #28 ENSANAG00000021711 ENSANAG00000031886 ENSANAG00000026733 ENSANAG00000032607 ENSANAG00000022190 ENSANAG00000031195 ENSANAG00000013923 PABPC5 (ENSANAG00000005063) #30 ENSANAG00000031272 ENSANAG00000023977 #31 ENSANAG00000031749 NAP1L3 (ENSANAG00000029163) #32 Mas night monkey MODERN SPECIES 1031 PMEL (ENSANAG00000024505) DGKA (ENSANAG00000021131) PYM1 (ENSANAG00000036967) MMP19 (ENSANAG00000038306) DNAJC14 (ENSANAG00000024440) ORMDL2 (ENSANAG00000016422) ENSANAG00000027405 GDF11 (ENSANAG00000033148) CD63 (ENSANAG00000038468) RDH5 (ENSANAG00000022716) ITGA7 (ENSANAG00000035353) METTL7B (ENSANAG00000036477) OR2AP1 (ENSANAG00000005559) OR6C4 (ENSANAG00000005997) OR6C2 (ENSANAG00000020125) ENSANAG00000026469 #22 OR6C3 (ENSANAG00000020167) OR6C6 (ENSANAG00000001856) OR6C74 (ENSANAG00000001962) OR9K2 (ENSANAG00000020116) ENSANAG00000023011 NEUROD4 (ENSANAG00000004700) TESPA1 (ENSANAG00000037498) MUCL1 (ENSANAG00000026232) ENSANAG00000030917 DCD (ENSANAG00000035073) LACRT (ENSANAG00000021062) PPP1R1A (ENSANAG00000036632) PDE1B (ENSANAG00000034831) NCKAP1L (ENSANAG00000025148) ENSANAG00000023191 Tarsier MODERN SPECIES 5924 ENSTSYG00000010926 #22 Strepsirrhini ANCESTRAL SPECIES 37 ENSGT00940000161206 ENSGT00950000183107.a.b.b ENSGT00940000171348 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 Lemuriformes ANCESTRAL SPECIES 49 ENSGT00950000183107.a.b.b ENSGT00940000156017.t.b ENSGT00940000171348 ENSGT00940000156017.u ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000162668 #30 ENSGT00940000158335 #31 Lemuriformes_a ANCESTRAL SPECIES ENSGT00390000001134.b #22 Coquerels sifaka MODERN SPECIES 366 ENSPCOG00000020654 #27 APOOL (ENSPCOG00000005300) #16 ZNF711 (ENSPCOG00000028562) #19 POF1B (ENSPCOG00000024295) #20 CHM (ENSPCOG00000023228) #21 ENSPCOG00000028077 DACH2 (ENSPCOG00000017626) #22 Mouse lemur MODERN SPECIES 169 ENSMICG00000029900 #19 ENSMICG00000027473 ENSMICG00000004627 ENSMICG00000045268 POU3F4 (ENSMICG00000017301) #10 CYLC1 (ENSMICG00000010585) #11 RPS6KA6 (ENSMICG00000006433) #12 HDX (ENSMICG00000027640) #13 ENSMICG00000015844 #16 ENSMICG00000045126 #17 ENSMICG00000005033 #19 POF1B (ENSMICG00000005035) #20 ENSMICG00000028499 ENSMICG00000046563 CHM (ENSMICG00000029091) #21 DACH2 (ENSMICG00000001391) #22 ENSMICG00000038744 KLHL4 (ENSMICG00000017361) #23 ENSMICG00000043678 #27 ENSMICG00000026541 NAP1L3 (ENSMICG00000001406) #32 ENSMICG00000037025 ENSMICG00000036794 CPXCR1 (ENSMICG00000002763) #28 ENSMICG00000035289 ENSMICG00000034290 ENSMICG00000026503 PABPC5 (ENSMICG00000041706) #30 ENSMICG00000031126 ENSMICG00000031336 #31 ENSMICG00000035434 Laurasiatheria ANCESTRAL SPECIES 16 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Eulipotyphla ANCESTRAL SPECIES ENSGT00390000001134.b #22 Common shrew MODERN SPECIES 1888 DACH2 (ENSSARG00000001494) #22 Laurasiatheria_a ANCESTRAL SPECIES 10 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Artiodactyla ANCESTRAL SPECIES 9 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000166006 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 Suina ANCESTRAL SPECIES 7 ENSGT00940000161206 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163888 #27 ENSGT00940000165291.w ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 Pig MODERN SPECIES 300 ENSSSCG00000032946 ENSSSCG00000012452 ENSSSCG00000031731 ENSSSCG00000040430 POU3F4 (ENSSSCG00000012454) #10 CYLC1 (ENSSSCG00000012455) #11 RPS6KA6 (ENSSSCG00000012456) #12 HDX (ENSSSCG00000038744) #13 ENSSSCG00000044442 #14 APOOL (ENSSSCG00000012459) #16 ENSSSCG00000038238 #17 ENSSSCG00000023546 #18 ZNF711 (ENSSSCG00000021601) #19 POF1B (ENSSSCG00000012462) #20 CHM (ENSSSCG00000012463) #21 DACH2 (ENSSSCG00000036515) #22 ENSSSCG00000040198 ENSSSCG00000041269 ENSSSCG00000036557 KLHL4 (ENSSSCG00000012467) #23 ENSSSCG00000012469 #27 ENSSSCG00000051391 ENSSSCG00000061974 ENSSSCG00000041020 PABPC5 (ENSSSCG00000040194) #30 ENSSSCG00000051742 ENSSSCG00000029771 #31 ENSSSCG00000061152 ENSSSCG00000050751 ENSSSCG00000056840 ENSSSCG00000041744 Chacoan peccary MODERN SPECIES 13 ENSCWAG00000011465 #14 APOOL (ENSCWAG00000011560) #16 ENSCWAG00000011702 #17 ENSCWAG00000011729 #18 ZNF711 (ENSCWAG00000011798) #19 POF1B (ENSCWAG00000011995) #20 ENSCWAG00000012315 ENSCWAG00000012326 CHM (ENSCWAG00000012359) #21 DACH2 (ENSCWAG00000012445) #22 KLHL4 (ENSCWAG00000013421) #23 ENSCWAG00000013663 #27 ENSCWAG00000013703 ENSCWAG00000013735 ENSCWAG00000013765 ENSCWAG00000013796 #29 PABPC5 (ENSCWAG00000013807) #30 ENSCWAG00000013876 #31 NAP1L3 (ENSCWAG00000014353) #32 FAM133A (ENSCWAG00000014370) ENSCWAG00000014403 DIAPH2 (ENSCWAG00000014494) ENSCWAG00000014564 ENSCWAG00000014586 ENSCWAG00000014628 Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00530000065541 ENSGT00940000157822 ENSGT00940000166006 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Artiodactyla_b ANCESTRAL SPECIES 19 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00530000065541 ENSGT00940000157822 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Cetacea ANCESTRAL SPECIES 19 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987.c ENSGT00940000161632 Blue whale MODERN SPECIES 40 ENSBMSG00010016407 ENSBMSG00010016435 SH3BGRL (ENSBMSG00010016502) ENSBMSG00010016527 ENSBMSG00010016538 POU3F4 (ENSBMSG00010016551) #10 RPS6KA6 (ENSBMSG00010016590) #12 ENSBMSG00010016817 HDX (ENSBMSG00010016834) #13 ENSBMSG00010016890 #14 APOOL (ENSBMSG00010016918) #16 ENSBMSG00010016944 #18 ZNF711 (ENSBMSG00010016976) #19 ENSBMSG00010017049 ENSBMSG00010017064 #21 DACH2 (ENSBMSG00010017134) #22 KLHL4 (ENSBMSG00010017758) #23 ENSBMSG00010017853 ENSBMSG00010017868 PABPC5 (ENSBMSG00010017886) #30 ENSBMSG00010017906 #31 ENSBMSG00010017924 ENSBMSG00010017958 ENSBMSG00010017970 ENSBMSG00010017990 ENSBMSG00010018010 ENSBMSG00010018115 ENSBMSG00010018137 NAP1L3 (ENSBMSG00010018151) #32 ENSBMSG00010018158 FAM133A (ENSBMSG00010018169) Odontoceti ANCESTRAL SPECIES 19 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00950000183000.c.a.a.i.a.a.b.a.a ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987.c Sperm whale MODERN SPECIES 13 SH3BGRL (ENSPCTG00005017239) ENSPCTG00005017278 ENSPCTG00005017342 ENSPCTG00005017351 POU3F4 (ENSPCTG00005017365) #10 RPS6KA6 (ENSPCTG00005017401) #12 HDX (ENSPCTG00005017842) #13 ENSPCTG00005018003 #14 ENSPCTG00005018057 APOOL (ENSPCTG00005018097) #16 ENSPCTG00005018126 #17 ENSPCTG00005018213 #18 ZNF711 (ENSPCTG00005018257) #19 ENSPCTG00005018358 CHM (ENSPCTG00005018395) #21 DACH2 (ENSPCTG00005018538) #22 KLHL4 (ENSPCTG00005019112) #23 ENSPCTG00005019271 ENSPCTG00005019306 ENSPCTG00005019336 PABPC5 (ENSPCTG00005019361) #30 PCDH11X (ENSPCTG00005019408) #31 ENSPCTG00005019726 NAP1L3 (ENSPCTG00005019741) #32 FAM133A (ENSPCTG00005019776) ENSPCTG00005004579 ENSPCTG00005004597 DIAPH2 (ENSPCTG00005004664) ENSPCTG00005004719 PCDH19 (ENSPCTG00005004740) TNMD (ENSPCTG00005004808) Odontoceti_a ANCESTRAL SPECIES 28 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000005534.b.b.d ENSGT00390000008591 #13 ENSGT00530000063666.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00950000183000.c.a.a.i.a.a.b.a.a ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987.c Dolphin MODERN SPECIES 2486 CHM (ENSTTRG00000008841) #21 DACH2 (ENSTTRG00000008854) #22 Odontoceti_b ANCESTRAL SPECIES 17 ENSGT00950000183107.a.b.b ENSGT00390000002517.a.a.c.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000005534.b.b.d ENSGT00390000008591 #13 ENSGT00530000063666.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00950000183000.c.a.a.i.a.a.b.a.a ENSGT00940000162927 #32 ENSGT00390000000334 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00510000047537.u.a ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 Vaquita MODERN SPECIES 34 ENSPSNG00000014459 ENSPSNG00000014508 ENSPSNG00000014737 SH3BGRL (ENSPSNG00000014759) ENSPSNG00000014813 POU3F4 (ENSPSNG00000014834) #10 RPS6KA6 (ENSPSNG00000014893) #12 HDX (ENSPSNG00000015468) #13 APOOL (ENSPSNG00000015621) #16 ENSPSNG00000015676 #17 ENSPSNG00000015761 #18 ZNF711 (ENSPSNG00000015952) #19 POF1B (ENSPSNG00000016065) #20 ENSPSNG00000016452 CHM (ENSPSNG00000016502) #21 DACH2 (ENSPSNG00000016658) #22 KLHL4 (ENSPSNG00000017273) #23 ENSPSNG00000017474 PABPC5 (ENSPSNG00000017503) #30 ENSPSNG00000017610 #31 CFL1 (ENSPSNG00000017983) ENSPSNG00000018006 NAP1L3 (ENSPSNG00000018038) #32 ENSPSNG00000018050 FAM133A (ENSPSNG00000018066) ENSPSNG00000018119 ENSPSNG00000018153 DIAPH2 (ENSPSNG00000018229) ENSPSNG00000018357 PCDH19 (ENSPSNG00000018410) TNMD (ENSPSNG00000018556) Monodontidae ANCESTRAL SPECIES 19 ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT01010000229653 ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000005534.b.b.d ENSGT00390000008591 #13 ENSGT00530000063666.a.a.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00950000183000.c.a.a.i.a.a.b.a.a ENSGT00940000162927 #32 ENSGT00390000000334 ENSGT00730000111097.e ENSGT00430000032886 ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00510000047537.u.a ENSGT00910000147624 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d Beluga whale MODERN SPECIES 15 ENSDLEG00000002320 ENSDLEG00000002316 SH3BGRL (ENSDLEG00000002296) ENSDLEG00000002284 ENSDLEG00000002271 POU3F4 (ENSDLEG00000002267) #10 ENSDLEG00000002260 RPS6KA6 (ENSDLEG00000000947) #12 HDX (ENSDLEG00000000563) #13 ENSDLEG00000000533 #14 ENSDLEG00000000411 #16 ZNF711 (ENSDLEG00000000338) #19 ENSDLEG00000000305 POF1B (ENSDLEG00000000273) #20 CHM (ENSDLEG00000000210) #21 DACH2 (ENSDLEG00000002711) #22 KLHL4 (ENSDLEG00000002692) #23 PABPC5 (ENSDLEG00000002684) #30 PCDH11X (ENSDLEG00000002680) #31 CFL1 (ENSDLEG00000002672) ENSDLEG00000002665 ENSDLEG00000002658 #32 ENSDLEG00000002653 #32 ENSDLEG00000002650 ENSDLEG00000002644 ENSDLEG00000002633 ENSDLEG00000002627 DIAPH2 (ENSDLEG00000002376) ENSDLEG00000002326 ENSDLEG00000002324 PCDH19 (ENSDLEG00000002317) Narwhal MODERN SPECIES 309 SH3BGRL (ENSMMNG00015009604) ENSMMNG00015009610 ENSMMNG00015009619 ENSMMNG00015009625 RPS6KA6 (ENSMMNG00015009638) #12 ENSMMNG00015009659 HDX (ENSMMNG00015009669) #13 ENSMMNG00015009686 #14 ENSMMNG00015009704 #16 ENSMMNG00015009712 #17 ENSMMNG00015009720 #18 ZNF711 (ENSMMNG00015009729) #19 POF1B (ENSMMNG00015009745) #20 ENSMMNG00015009775 CHM (ENSMMNG00015009797) #21 DACH2 (ENSMMNG00015009862) #22 KLHL4 (ENSMMNG00015009956) #23 PABPC5 (ENSMMNG00015009976) #30 ENSMMNG00015010023 #31 ENSMMNG00015010095 ENSMMNG00015010114 ENSMMNG00015010123 NAP1L3 (ENSMMNG00015010132) #32 ENSMMNG00015010144 FAM133A (ENSMMNG00015010151) ENSMMNG00015010182 ENSMMNG00015010199 DIAPH2 (ENSMMNG00015010234) ENSMMNG00015010275 ENSMMNG00015010280 PCDH19 (ENSMMNG00015010301) Pecora ANCESTRAL SPECIES 27 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000163888 #27 ENSGT00940000158335 #31 ENSGT00530000065541 ENSGT00940000157822 ENSGT00940000164266 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000153412.A.a.d ENSGT00390000007539.i.b.b.i ENSGT00940000161990 Yarkand deer MODERN SPECIES 1323 ENSCHYG00000008712 ENSCHYG00000008699 ENSCHYG00000022587 ENSCHYG00000022538 POU3F4 (ENSCHYG00000022504) #10 ENSCHYG00000022492 CYLC1 (ENSCHYG00000022460) #11 ENSCHYG00000022431 ENSCHYG00000022413 RPS6KA6 (ENSCHYG00000021809) #12 HDX (ENSCHYG00000021734) #13 ENSCHYG00000021672 #14 APOOL (ENSCHYG00000021527) #16 ZNF711 (ENSCHYG00000021449) #19 POF1B (ENSCHYG00000021264) #20 DACH2 (ENSCHYG00000020337) #22 ENSCHYG00000020263 KLHL4 (ENSCHYG00000020155) #23 ENSCHYG00000020043 #29 ENSCHYG00000020012 ENSCHYG00000019820 PABPC5 (ENSCHYG00000019770) #30 ENSCHYG00000019710 ENSCHYG00000019678 ENSCHYG00000019618 ENSCHYG00000019408 #31 ENSCHYG00000019346 #31 FAM133A (ENSCHYG00000019252) ENSCHYG00000019126 #36 ENSCHYG00000019101 ENSCHYG00000019061 Percora_a ANCESTRAL SPECIES 22 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000163888 #27 ENSGT00940000158335 #31 ENSGT00530000065541 ENSGT00940000157822 ENSGT00940000164266 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000153412.A.a.d ENSGT00390000007539.i.b.b.i ENSGT00940000161990 ENSGT00940000162726 Siberian musk deer MODERN SPECIES 9 POU3F4 (ENSMMSG00000011014) #10 CYLC1 (ENSMMSG00000010990) #11 RPS6KA6 (ENSMMSG00000010835) #12 ENSMMSG00000010807 ENSMMSG00000010779 HDX (ENSMMSG00000010697) #13 ENSMMSG00000010593 #14 APOOL (ENSMMSG00000010528) #16 ENSMMSG00000010476 #17 ZNF711 (ENSMMSG00000010430) #19 POF1B (ENSMMSG00000010335) #20 ENSMMSG00000010293 ENSMMSG00000010127 ENSMMSG00000010099 CHM (ENSMMSG00000009948) #21 DACH2 (ENSMMSG00000009445) #22 KLHL4 (ENSMMSG00000009371) #23 ENSMMSG00000009361 ENSMMSG00000009352 ENSMMSG00000009313 ENSMMSG00000009265 PABPC5 (ENSMMSG00000009243) #30 ENSMMSG00000009216 ENSMMSG00000008613 #31 Bovidae ANCESTRAL SPECIES 23 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 Bovinae ANCESTRAL SPECIES 38 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 Bos ANCESTRAL SPECIES 30 ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00920000150804 ENSGT00940000159242 #12 ENSGT01030000235010.e.a ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00950000183097.a.a.a ENSGT00940000160039 ENSGT00940000159971 ENSGT01050000244937.a.b.a ENSGT00940000159055 ENSGT00990000203589.a.b.a.b ENSGT01060000248594.e.a ENSGT00390000018248 ENSGT00940000159922.b ENSGT00510000047493 ENSGT00950000183232 ENSGT00940000161570 ENSGT00940000156128.b ENSGT00950000182988.a.b.b.b ENSGT00390000005057.h.a.b.d Bos_a ANCESTRAL SPECIES 19 ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00920000150804 ENSGT00940000159242 #12 ENSGT01030000235010.e.a ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00950000183097.a.a.a ENSGT00940000160039 ENSGT00940000159971 ENSGT01050000244937.a.b.a ENSGT00940000159055 ENSGT00940000161558 ENSGT00390000013518 ENSGT00990000203589.a.b.a.b ENSGT00390000008657 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.b.b ENSGT00940000155313 ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.b.a.b.a.b ENSGT00390000010391 Wild yak MODERN SPECIES 268 DACH2 (ENSBMUG00000026497) #22 ENSBMUG00000026498 ENSBMUG00000026499 Domestic yak MODERN SPECIES 69 SH3BGRL (ENSBGRG00000013469) ENSBGRG00000013446 ENSBGRG00000013400 ENSBGRG00000013359 POU3F4 (ENSBGRG00000013340) #10 CYLC1 (ENSBGRG00000013173) #11 RPS6KA6 (ENSBGRG00000012307) #12 ENSBGRG00000025377 HDX (ENSBGRG00000025367) #13 ENSBGRG00000025313 #14 ENSBGRG00000025291 #17 APOOL (ENSBGRG00000025225) #16 ZNF711 (ENSBGRG00000025171) #19 POF1B (ENSBGRG00000025068) #20 CHM (ENSBGRG00000024881) #21 DACH2 (ENSBGRG00000024724) #22 PLS3 (ENSBGRG00000024473) ENSBGRG00000024443 LRCH2 (ENSBGRG00000024233) IL13RA2 (ENSBGRG00000024134) HTR2C (ENSBGRG00000024094) AMOT (ENSBGRG00000023864) LHFPL1 (ENSBGRG00000023789) ENSBGRG00000023774 TRPC5OS (ENSBGRG00000023756) TRPC5 (ENSBGRG00000023665) ALG13 (ENSBGRG00000023625) ENSBGRG00000023530 SERTM2 (ENSBGRG00000023522) DCX (ENSBGRG00000023448) CAPN6 (ENSBGRG00000023382) Bos_b ANCESTRAL SPECIES 31 ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00920000150804 ENSGT00940000159242 #12 ENSGT01030000235010.e.a ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00950000183097.a.a.a ENSGT00940000160039 ENSGT00940000159971 ENSGT00390000005057.h.b.b ENSGT00890000139472.h.a.b ENSGT01050000244937.a.b.a ENSGT00940000153201.j.u.i.b ENSGT00940000159055 ENSGT00990000203589.a.b.a.b ENSGT01060000248594.e.a ENSGT00390000018248 ENSGT00940000159922.b ENSGT00510000047493 ENSGT00950000183232 ENSGT00940000161570 Cow MODERN SPECIES 177 ENSBTAG00000051658 ENSBTAG00000039066 POU3F4 (ENSBTAG00000015712) #10 CYLC1 (ENSBTAG00000047417) #11 ENSBTAG00000048589 RPS6KA6 (ENSBTAG00000002015) #12 ENSBTAG00000055024 HDX (ENSBTAG00000051806) #13 ENSBTAG00000027867 #14 APOOL (ENSBTAG00000021790) #16 ENSBTAG00000013077 #17 ZNF711 (ENSBTAG00000002668) #19 POF1B (ENSBTAG00000014485) #20 ENSBTAG00000046941 CHM (ENSBTAG00000009598) #21 DACH2 (ENSBTAG00000044037) #22 ENSBTAG00000049980 PLS3 (ENSBTAG00000011613) ENSBTAG00000046463 LRCH2 (ENSBTAG00000050382) IL13RA2 (ENSBTAG00000020022) ENSBTAG00000046327 ENSBTAG00000053214 ENSBTAG00000055095 HTR2C (ENSBTAG00000054073) ENSBTAG00000050670 ENSBTAG00000016688 AMOT (ENSBTAG00000016221) LHFPL1 (ENSBTAG00000032485) ENSBTAG00000051180 TRPC5OS (ENSBTAG00000049974) Hybrid Bos Indicus MODERN SPECIES 315 ENSBIXG00005023627 RPS6KA6 (ENSBIXG00005004019) #12 ENSBIXG00005022982 ENSBIXG00005022974 ENSBIXG00005005756 ENSBIXG00005022936 HDX (ENSBIXG00005022875) #13 ENSBIXG00005022647 #14 APOOL (ENSBIXG00005022564) #16 ENSBIXG00005022499 #17 ZNF711 (ENSBIXG00005003824) #19 POF1B (ENSBIXG00005022276) #20 ENSBIXG00005022230 CHM (ENSBIXG00005022182) #21 ENSBIXG00005022091 DACH2 (ENSBIXG00005003727) #22 ENSBIXG00005007070 PLS3 (ENSBIXG00005003665) ENSBIXG00005021585 LRCH2 (ENSBIXG00005021533) IL13RA2 (ENSBIXG00005007068) ENSBIXG00005021395 ENSBIXG00005005873 ENSBIXG00005007160 HTR2C (ENSBIXG00005021329) ENSBIXG00005007729 AMOT (ENSBIXG00005021243) LHFPL1 (ENSBIXG00005021192) TRPC5 (ENSBIXG00005021071) TRPC5OS (ENSBIXG00005021048) ENSBIXG00005021029 Caprinae ANCESTRAL SPECIES 53 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992.s ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a ENSGT00390000000360.r.d.b ENSGT00950000183068.a.a ENSGT00390000018904 ENSGT00940000158132 ENSGT00390000016992.t ENSGT00940000163020.bb Rambouillet Sheep MODERN SPECIES 205 GAS2 (ENSOARG00020020094) SVIP (ENSOARG00020020165) CCDC179 (ENSOARG00020020216) CYLC1 (ENSOARG00020020266) #11 RPS6KA6 (ENSOARG00020020348) #12 HDX (ENSOARG00020021028) #13 ENSOARG00020021109 ENSOARG00020021130 ENSOARG00020021167 ENSOARG00020021215 #14 APOOL (ENSOARG00020021301) #16 ENSOARG00020021396 #17 ZNF711 (ENSOARG00020021464) #19 POF1B (ENSOARG00020021532) #20 CHM (ENSOARG00020021776) #21 DACH2 (ENSOARG00020021981) #22 ENSOARG00020022547 ENSOARG00020022607 ENSOARG00020022613 ENSOARG00020022631 GAB3 (ENSOARG00020015493) DKC1 (ENSOARG00020015553) MPP1 (ENSOARG00020015726) SMIM9 (ENSOARG00020015879) F8 (ENSOARG00020015985) ENSOARG00020016962 FUNDC2 (ENSOARG00020017001) CMC4 (ENSOARG00020017081) MTCP1 (ENSOARG00020017110) BRCC3 (ENSOARG00020017169) VBP1 (ENSOARG00020017496) Goat DUPLICATION Goat MODERN SPECIES 56 ENSCHIG00000017586 #22 Goat MODERN SPECIES 29 ATRX (ENSCHIG00000013700) MAGT1 (ENSCHIG00000013861) ATP7A (ENSCHIG00000016420) ENSCHIG00000003253 ENSCHIG00000002486 TAF9B (ENSCHIG00000018621) ENSCHIG00000022832 PGK1 (ENSCHIG00000009440) ENSCHIG00000017553 ENSCHIG00000011572 UPRT (ENSCHIG00000016731) ENSCHIG00000018015 ZNF711 (ENSCHIG00000011383) #19 POF1B (ENSCHIG00000020154) #20 CHM (ENSCHIG00000022478) #21 ENSCHIG00000016036 #22 ENSCHIG00000011958 CYLC1 (ENSCHIG00000015857) #11 POU3F4 (ENSCHIG00000002076) #10 ENSCHIG00000004218 ENSCHIG00000016967 ENSCHIG00000004429 ENSCHIG00000012493 #12 HDX (ENSCHIG00000008366) #13 MAGEE2 (ENSCHIG00000007901) ZDHHC15 (ENSCHIG00000012700) ABCB7 (ENSCHIG00000005807) NEXMIF (ENSCHIG00000014641) RLIM (ENSCHIG00000019610) SLC16A2 (ENSCHIG00000015992) ZCCHC13 (ENSCHIG00000019132) Camelidae ANCESTRAL SPECIES 43 ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000166006 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Arabian camel MODERN SPECIES 204 ENSCDRG00005021194 ENSCDRG00005021199 ENSCDRG00005021204 POU3F4 (ENSCDRG00005021206) #10 CYLC1 (ENSCDRG00005021207) #11 RPS6KA6 (ENSCDRG00005021214) #12 ENSCDRG00005021222 HDX (ENSCDRG00005021225) #13 ENSCDRG00005021233 #14 APOOL (ENSCDRG00005021240) #16 ENSCDRG00005021246 #17 ENSCDRG00005021249 #18 ZNF711 (ENSCDRG00005021254) #19 POF1B (ENSCDRG00005021270) #20 CHM (ENSCDRG00005021282) #21 DACH2 (ENSCDRG00005021299) #22 KLHL4 (ENSCDRG00005021364) #23 ENSCDRG00005021374 ENSCDRG00005021383 ENSCDRG00005021388 #27 ENSCDRG00005021391 #27 ENSCDRG00005021393 ENSCDRG00005021397 ENSCDRG00005021401 #29 ENSCDRG00005021402 ENSCDRG00005021404 PABPC5 (ENSCDRG00005021408) #30 ENSCDRG00005021420 #31 ENSCDRG00005021432 ENSCDRG00005021437 NAP1L3 (ENSCDRG00005021442) #32 Alpaca MODERN SPECIES 252 DACH2 (ENSVPAG00000012410) #22 Laurasiatheria_b ANCESTRAL SPECIES 10 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Laurasiatheria_c ANCESTRAL SPECIES 10 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Equus ANCESTRAL SPECIES 27 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000163888.d #27 ENSGT00940000163888.c.b #27 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000153773.a.a.b ENSGT00940000163888.c.a #27 ENSGT00510000046985.h.b.a.a.b ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000154426.b.a ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 Horse MODERN SPECIES 480 ENSECAG00000038924 ENSECAG00000058100 POU3F4 (ENSECAG00000002519) #10 CYLC1 (ENSECAG00000019066) #11 RPS6KA6 (ENSECAG00000019431) #12 HDX (ENSECAG00000024862) #13 ENSECAG00000036171 #27 ENSECAG00000007854 #14 ENSECAG00000035131 #27 APOOL (ENSECAG00000009229) #16 ENSECAG00000026966 #17 ENSECAG00000033045 #18 ZNF711 (ENSECAG00000012161) #19 POF1B (ENSECAG00000013592) #20 CHM (ENSECAG00000019201) #21 DACH2 (ENSECAG00000023997) #22 ENSECAG00000004018 KLHL4 (ENSECAG00000002157) #23 ENSECAG00000056775 ENSECAG00000057912 ENSECAG00000053318 ENSECAG00000038200 ENSECAG00000033999 #27 ENSECAG00000003102 #28 ENSECAG00000001370 ENSECAG00000035882 #29 ENSECAG00000006930 PABPC5 (ENSECAG00000003452) #30 ENSECAG00000007466 #31 ENSECAG00000003528 FAM133A (ENSECAG00000034095) Donkey DUPLICATION Donkey MODERN SPECIES 36 ENSEASG00005035953 POU3F4 (ENSEASG00005005148) #10 CYLC1 (ENSEASG00005017371) #11 RPS6KA6 (ENSEASG00005029386) #12 HDX (ENSEASG00005027565) #13 ENSEASG00005033871 #27 ENSEASG00005034949 #14 ENSEASG00005036812 #27 APOOL (ENSEASG00005011125) #16 ENSEASG00005011122 #17 ENSEASG00005033831 #18 ZNF711 (ENSEASG00005029213) #19 POF1B (ENSEASG00005011111) #20 CHM (ENSEASG00005002132) #21 ENSEASG00005029848 #22 ENSEASG00005002489 #22 ENSEASG00005019161 ENSEASG00005013651 ENSEASG00005014352 #23 ENSEASG00005014126 ENSEASG00005034414 #27 ENSEASG00005025341 ENSEASG00005008384 ENSEASG00005025105 #29 ENSEASG00005028494 #36 ENSEASG00005024152 #36 ENSEASG00005022753 #31 NAP1L3 (ENSEASG00005036188) #32 ENSEASG00005028803 Donkey MODERN SPECIES 36 ENSEASG00005033419 ENSEASG00005035953 POU3F4 (ENSEASG00005005148) #10 CYLC1 (ENSEASG00005017371) #11 RPS6KA6 (ENSEASG00005029386) #12 HDX (ENSEASG00005027565) #13 ENSEASG00005033871 #27 ENSEASG00005034949 #14 ENSEASG00005036812 #27 APOOL (ENSEASG00005011125) #16 ENSEASG00005011122 #17 ENSEASG00005033831 #18 ZNF711 (ENSEASG00005029213) #19 POF1B (ENSEASG00005011111) #20 CHM (ENSEASG00005002132) #21 ENSEASG00005029848 #22 ENSEASG00005002489 #22 ENSEASG00005019161 ENSEASG00005013651 ENSEASG00005014352 #23 ENSEASG00005014126 ENSEASG00005034414 #27 ENSEASG00005025341 ENSEASG00005008384 ENSEASG00005025105 #29 ENSEASG00005028494 #36 ENSEASG00005024152 #36 ENSEASG00005022753 #31 NAP1L3 (ENSEASG00005036188) #32 ENSEASG00005028803 Chiroptera ANCESTRAL SPECIES 28 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00530000065541 ENSGT00940000157822 ENSGT00390000009320 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Megabat MODERN SPECIES 381 DACH2 (ENSPVAG00000011225) #22 Microchiroptera ANCESTRAL SPECIES 28 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00530000065541 ENSGT00940000157822 ENSGT00390000009320 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Microbat DUPLICATION Microbat MODERN SPECIES 941 POU3F4 (ENSMLUG00000004140) #10 ENSMLUG00000011590 #11 RPS6KA6 (ENSMLUG00000015440) #12 ENSMLUG00000027800 #13 ENSMLUG00000006649 #13 ENSMLUG00000027285 ENSMLUG00000022222 #14 ENSMLUG00000026037 #15 APOOL (ENSMLUG00000011384) #16 ZNF711 (ENSMLUG00000009270) #19 POF1B (ENSMLUG00000009283) #20 ENSMLUG00000024162 ENSMLUG00000030018 CHM (ENSMLUG00000011286) #21 ENSMLUG00000024029 #22 ENSMLUG00000006724 #22 ENSMLUG00000025133 Microbat MODERN SPECIES 941 ENSMLUG00000006065 POU3F4 (ENSMLUG00000004140) #10 ENSMLUG00000011590 #11 RPS6KA6 (ENSMLUG00000015440) #12 ENSMLUG00000027800 #13 ENSMLUG00000006649 #13 ENSMLUG00000027285 ENSMLUG00000022222 #14 ENSMLUG00000026037 #15 APOOL (ENSMLUG00000011384) #16 ZNF711 (ENSMLUG00000009270) #19 POF1B (ENSMLUG00000009283) #20 ENSMLUG00000024162 ENSMLUG00000030018 CHM (ENSMLUG00000011286) #21 ENSMLUG00000024029 #22 ENSMLUG00000006724 #22 ENSMLUG00000025133 Greater horseshoe bat MODERN SPECIES ENSRFEG00010005101 ENSRFEG00010005097 POU3F4 (ENSRFEG00010005086) #10 ENSRFEG00010005081 CYLC1 (ENSRFEG00010005076) #11 RPS6KA6 (ENSRFEG00010005068) #12 ENSRFEG00010005063 HDX (ENSRFEG00010005055) #13 ENSRFEG00010005048 #14 ENSRFEG00010005042 #16 ENSRFEG00010005034 #18 ZNF711 (ENSRFEG00010005016) #19 POF1B (ENSRFEG00010004986) #20 CHM (ENSRFEG00010004965) #21 ENSRFEG00010004953 DACH2 (ENSRFEG00010004914) #22 ENSRFEG00010004884 ENSRFEG00010004881 ENSRFEG00010004876 KLHL4 (ENSRFEG00010004859) #23 ENSRFEG00010004852 ENSRFEG00010004844 ENSRFEG00010004834 CPXCR1 (ENSRFEG00010004825) #28 ENSRFEG00010004813 ENSRFEG00010004803 #29 PABPC5 (ENSRFEG00010004787) #30 ENSRFEG00010004780 ENSRFEG00010004747 NAP1L3 (ENSRFEG00010004744) #32 ENSRFEG00010004739 Carnivora ANCESTRAL SPECIES 11 ENSGT00950000182832.D.b ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00530000065541 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 Felidae ANCESTRAL SPECIES 12 ENSGT00940000161206 ENSGT00950000182832.D.b ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a.c #16 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a.c #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f ENSGT00940000161284 Panthera ANCESTRAL SPECIES 51 ENSGT01100000263536.B.c.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.A.a.a.b ENSGT01100000263536.A.a.a.a ENSGT00950000182832.D.b ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00950000182994.A.n.a.c #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00530000065541 ENSGT00940000157822 ENSGT00390000017955.c.l ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f Tiger MODERN SPECIES 416 APOOL (ENSPTIG00000008881) #16 CHM (ENSPTIG00000008496) #21 DACH2 (ENSPTIG00000007532) #22 Panthera_a ANCESTRAL SPECIES 59 ENSGT01100000263536.B.c.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.A.a.a.b ENSGT01100000263536.A.a.a.a ENSGT00950000182832.D.b ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00950000182994.A.n.a.c #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00980000199103.A ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00390000017955.c.l ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a.f leopard MODERN SPECIES 156 DACH2 (ENSPPRG00000008558) #22 KLHL4 (ENSPPRG00000007952) #23 ENSPPRG00000010746 #29 PABPC5 (ENSPPRG00000010742) #30 ENSPPRG00000007354 ENSPPRG00000007345 #31 ENSPPRG00000006418 ENSPPRG00000010736 lion MODERN SPECIES 88 CYSLTR1 (ENSPLOG00000017757) LPAR4 (ENSPLOG00000017742) P2RY10 (ENSPLOG00000017725) ENSPLOG00000017648 TENT5D (ENSPLOG00000017623) BRWD3 (ENSPLOG00000017318) ENSPLOG00000017281 SH3BGRL (ENSPLOG00000017246) ENSPLOG00000017210 POU3F4 (ENSPLOG00000017183) #10 CYLC1 (ENSPLOG00000017131) #11 RPS6KA6 (ENSPLOG00000016820) #12 HDX (ENSPLOG00000016668) #13 ENSPLOG00000016617 #14 ENSPLOG00000016565 #21 DACH2 (ENSPLOG00000016162) #22 KLHL4 (ENSPLOG00000016046) #23 ENSPLOG00000016027 #29 PABPC5 (ENSPLOG00000016010) #30 ENSPLOG00000015979 ENSPLOG00000015940 ENSPLOG00000015911 ENSPLOG00000015763 DIAPH2 (ENSPLOG00000014542) PCDH19 (ENSPLOG00000021513) ENSPLOG00000021486 TNMD (ENSPLOG00000021456) TSPAN6 (ENSPLOG00000021416) SRPX2 (ENSPLOG00000021382) SYTL4 (ENSPLOG00000021355) CSTF2 (ENSPLOG00000021229) Cat MODERN SPECIES 252 BRWD3 (ENSFCAG00000022198) ENSFCAG00000037632 SH3BGRL (ENSFCAG00000030770) ENSFCAG00000025360 POU3F4 (ENSFCAG00000011964) #10 ENSFCAG00000048151 CYLC1 (ENSFCAG00000012662) #11 RPS6KA6 (ENSFCAG00000009130) #12 ENSFCAG00000039681 HDX (ENSFCAG00000005781) #13 ENSFCAG00000051849 #14 APOOL (ENSFCAG00000033790) #16 ZNF711 (ENSFCAG00000013317) #19 POF1B (ENSFCAG00000031668) #20 CHM (ENSFCAG00000030652) #21 DACH2 (ENSFCAG00000022761) #22 ENSFCAG00000047441 ENSFCAG00000004582 #29 ENSFCAG00000052791 ENSFCAG00000044982 ENSFCAG00000023574 #31 ENSFCAG00000037948 NAP1L3 (ENSFCAG00000053543) #32 DIAPH2 (ENSFCAG00000029591) ENSFCAG00000052052 ENSFCAG00000048119 ENSFCAG00000050812 ENSFCAG00000044728 PCDH19 (ENSFCAG00000013438) TNMD (ENSFCAG00000043019) TSPAN6 (ENSFCAG00000003305) Caniformia ANCESTRAL SPECIES 22 ENSGT00940000161206 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092.d ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000158987 ENSGT00940000161632 Canidae ANCESTRAL SPECIES 59 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00950000185197 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e Canis_lupus ANCESTRAL SPECIES 44 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00950000185197 ENSGT00530000063666.a.e #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000154191.i.a.l.a.b ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00950000185318 ENSGT00730000111592 ENSGT00700000104637 Dog MODERN SPECIES 144 SH3BGRL (ENSCAFG00845022327) ENSCAFG00845022429 ENSCAFG00845022468 ENSCAFG00845022569 POU3F4 (ENSCAFG00845022645) #10 CYLC1 (ENSCAFG00845022676) #11 RPS6KA6 (ENSCAFG00845022907) #12 ENSCAFG00845023552 ENSCAFG00845023591 #14 APOOL (ENSCAFG00845023656) #16 ENSCAFG00845023778 #17 ENSCAFG00845023827 ZNF711 (ENSCAFG00845023911) #19 POF1B (ENSCAFG00845024223) #20 CHM (ENSCAFG00845024883) #21 DACH2 (ENSCAFG00845025244) #22 ENSCAFG00845025538 ENSCAFG00845025670 KLHL4 (ENSCAFG00845025779) #23 ENSCAFG00845025970 #29 PABPC5 (ENSCAFG00845026000) #30 ENSCAFG00845026042 #31 FAM133A (ENSCAFG00845026207) ENSCAFG00845026229 ENSCAFG00845026288 ENSCAFG00845026333 ENSCAFG00845026405 ENSCAFG00845026782 ENSCAFG00845026879 ENSCAFG00845026948 ENSCAFG00845026974 Dingo MODERN SPECIES 347 POU3F4 (ENSCAFG00020009214) #10 CYLC1 (ENSCAFG00020009204) #11 RPS6KA6 (ENSCAFG00020008851) #12 ENSCAFG00020008822 HDX (ENSCAFG00020008813) #13 ENSCAFG00020008810 ENSCAFG00020008797 #14 APOOL (ENSCAFG00020008777) #16 ENSCAFG00020008761 #17 ENSCAFG00020008757 ZNF711 (ENSCAFG00020008733) #19 POF1B (ENSCAFG00020008592) #20 CHM (ENSCAFG00020008573) #21 ENSCAFG00020008551 ENSCAFG00020008549 DACH2 (ENSCAFG00020008532) #22 KLHL4 (ENSCAFG00020008498) #23 ENSCAFG00020008484 #29 ENSCAFG00020008461 ENSCAFG00020008456 #31 NAP1L3 (ENSCAFG00020008423) #32 ENSCAFG00020008407 ENSCAFG00020008403 ENSCAFG00020008379 ENSCAFG00020008310 ENSCAFG00020008305 DIAPH2 (ENSCAFG00020008109) ENSCAFG00020008028 ENSCAFG00020008007 ENSCAFG00020008000 ENSCAFG00020007977 Red fox MODERN SPECIES 128 ENSVVUG00000011148 ENSVVUG00000011155 POU3F4 (ENSVVUG00000011203) #10 CYLC1 (ENSVVUG00000011222) #11 RPS6KA6 (ENSVVUG00000011245) #12 ENSVVUG00000011287 HDX (ENSVVUG00000011303) #13 ENSVVUG00000011312 ENSVVUG00000011330 #14 APOOL (ENSVVUG00000011396) #16 ENSVVUG00000011403 #17 ZNF711 (ENSVVUG00000011419) #19 POF1B (ENSVVUG00000011479) #20 CHM (ENSVVUG00000011968) #21 ENSVVUG00000012014 ENSVVUG00000012017 #22 ENSVVUG00000012023 ENSVVUG00000012028 KLHL4 (ENSVVUG00000012072) #23 CPXCR1 (ENSVVUG00000013152) #28 ENSVVUG00000013157 #29 PABPC5 (ENSVVUG00000013172) #30 ENSVVUG00000013175 #31 Caniformia_b ANCESTRAL SPECIES 24 ENSGT00940000161206 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 Ursidae ANCESTRAL SPECIES 47 ENSGT00940000161206 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000160311 ENSGT00390000003732 #28 ENSGT00940000163848 #29 ENSGT00940000162668 #30 ENSGT00940000158335 #31 ENSGT00390000017515.o.a.n ENSGT00940000162927 #32 ENSGT00730000111097.e ENSGT00940000157822 ENSGT00390000009320.fb.b ENSGT01100000264174 Giant Panda MODERN SPECIES 2288 TENT5D (ENSAMEG00000018974) BRWD3 (ENSAMEG00000008691) HMGN5 (ENSAMEG00000030368) SH3BGRL (ENSAMEG00000027788) POU3F4 (ENSAMEG00000019562) #10 CYLC1 (ENSAMEG00000002561) #11 RPS6KA6 (ENSAMEG00000003648) #12 HDX (ENSAMEG00000000875) #13 ENSAMEG00000019387 #14 APOOL (ENSAMEG00000000829) #16 ENSAMEG00000000814 #17 ZNF711 (ENSAMEG00000013076) #19 POF1B (ENSAMEG00000013055) #20 CHM (ENSAMEG00000010190) #21 ENSAMEG00000018811 DACH2 (ENSAMEG00000000232) #22 KLHL4 (ENSAMEG00000004825) #23 ENSAMEG00000019391 ENSAMEG00000004819 CPXCR1 (ENSAMEG00000003724) #28 ENSAMEG00000029029 #29 PABPC5 (ENSAMEG00000020114) #30 ENSAMEG00000015196 #31 ENSAMEG00000019756 ENSAMEG00000019505 NAP1L3 (ENSAMEG00000019124) #32 FAM133A (ENSAMEG00000019145) ENSAMEG00000018426 ENSAMEG00000028297 ENSAMEG00000024203 ENSAMEG00000018509 Ursus ANCESTRAL SPECIES 203 ENSGT00940000161206 ENSGT00940000162488 ENSGT00950000183107.a.b.b ENSGT00730000111570 ENSGT00940000156017 ENSGT00940000165353 ENSGT00940000161429 #10 ENSGT00730000111075.b #11 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 Polar bear MODERN SPECIES 224 ENSUMAG00000023844 SH3BGRL (ENSUMAG00000023846) ENSUMAG00000023847 ENSUMAG00000023853 ENSUMAG00000023857 POU3F4 (ENSUMAG00000023858) #10 CYLC1 (ENSUMAG00000023861) #11 ENSUMAG00000023863 #12 HDX (ENSUMAG00000023864) #13 ENSUMAG00000023865 #14 APOOL (ENSUMAG00000023869) #16 ENSUMAG00000023871 #17 ZNF711 (ENSUMAG00000023873) #19 POF1B (ENSUMAG00000023875) #20 CHM (ENSUMAG00000023882) #21 DACH2 (ENSUMAG00000023901) #22 Mustelinae ANCESTRAL SPECIES 271 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 Ferret DUPLICATION Ferret MODERN SPECIES 486 ENSMPUG00000005219 ENSMPUG00000005214 #22 Ferret MODERN SPECIES 541 CHM (ENSMPUG00000001194) #21 ENSMPUG00000001191 #22 Atlantogenata ANCESTRAL SPECIES 155 ENSGT00940000162927 #32 ENSGT00940000158335 #31 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 Xenarthra ANCESTRAL SPECIES ENSGT00390000001134.b #22 Armadillo MODERN SPECIES 3473 ENSDNOG00000031136 ENSDNOG00000032336 ENSDNOG00000049528 #22 Sloth MODERN SPECIES 2202 ENSCHOG00000012016 #22 Afrotheria ANCESTRAL SPECIES 188 ENSGT00940000162927 #32 ENSGT00940000158335.a #31 ENSGT00940000158335.b #31 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 Tenrec MODERN SPECIES 2452 DACH2 (ENSETEG00000012105) #22 Afrotheria_a ANCESTRAL SPECIES 189 ENSGT00940000162927 #32 ENSGT00940000158335.a #31 ENSGT00940000158335.b #31 ENSGT00940000163848 #29 ENSGT00390000003732 #28 ENSGT00940000163888 #27 ENSGT00530000067269 #15 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.n.a #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 Hyrax MODERN SPECIES 1990 ENSPCAG00000000296 #22 Elephant DUPLICATION Elephant MODERN SPECIES 251 ENSLAFG00000017956 SH3BGRL (ENSLAFG00000011746) ENSLAFG00000026530 POU3F4 (ENSLAFG00000015688) #10 ENSLAFG00000027489 RPS6KA6 (ENSLAFG00000007777) #12 HDX (ENSLAFG00000028655) #13 ENSLAFG00000031687 #14 ENSLAFG00000032687 #27 ENSLAFG00000028905 #15 APOOL (ENSLAFG00000008844) #16 ENSLAFG00000002972 #17 ZNF711 (ENSLAFG00000008864) #19 POF1B (ENSLAFG00000009185) #20 CHM (ENSLAFG00000000523) #21 ENSLAFG00000025694 #22 ENSLAFG00000011463 #22 ENSLAFG00000032279 KLHL4 (ENSLAFG00000000845) #23 ENSLAFG00000026011 #27 ENSLAFG00000031743 #28 ENSLAFG00000003848 #29 ENSLAFG00000027823 #31 ENSLAFG00000027443 #31 NAP1L3 (ENSLAFG00000016565) #32 Elephant MODERN SPECIES 251 SH3BGRL (ENSLAFG00000011746) ENSLAFG00000026530 POU3F4 (ENSLAFG00000015688) #10 ENSLAFG00000027489 RPS6KA6 (ENSLAFG00000007777) #12 HDX (ENSLAFG00000028655) #13 ENSLAFG00000031687 #14 ENSLAFG00000032687 #27 ENSLAFG00000028905 #15 APOOL (ENSLAFG00000008844) #16 ENSLAFG00000002972 #17 ZNF711 (ENSLAFG00000008864) #19 POF1B (ENSLAFG00000009185) #20 CHM (ENSLAFG00000000523) #21 ENSLAFG00000025694 #22 ENSLAFG00000011463 #22 ENSLAFG00000032279 KLHL4 (ENSLAFG00000000845) #23 ENSLAFG00000026011 #27 ENSLAFG00000031743 #28 ENSLAFG00000003848 #29 ENSLAFG00000027823 #31 ENSLAFG00000027443 #31 NAP1L3 (ENSLAFG00000016565) #32 Marsupialia ANCESTRAL SPECIES 6 ENSGT00390000013287.db.a ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 ENSGT00390000003364 ENSGT00940000156437 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00390000001134.b #22 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00390000008092.a ENSGT00940000154046.b ENSGT00390000002416 ENSGT00530000067979 ENSGT00940000161008 ENSGT00390000000945 ENSGT00390000000860.b ENSGT00940000156436 ENSGT00940000158864 ENSGT00390000002564.a ENSGT00390000016210 ENSGT00940000160028.i Opossum DUPLICATION Opossum MODERN SPECIES 627 POU3F4 (ENSMODG00000014279) #10 ENSMODG00000014280 #11 RPS6KA6 (ENSMODG00000014302) #12 HDX (ENSMODG00000014307) #13 ENSMODG00000014317 ENSMODG00000047117 ENSMODG00000014330 #16 ENSMODG00000027748 #17 ENSMODG00000014335 ENSMODG00000047591 #18 ZNF711 (ENSMODG00000014346) #19 POF1B (ENSMODG00000014360) #20 ENSMODG00000014364 #21 ENSMODG00000049021 ENSMODG00000049990 ENSMODG00000014370 #22 ENSMODG00000014379 ENSMODG00000010130 ENSMODG00000037297 UPRT (ENSMODG00000027579) ZDHHC15 (ENSMODG00000003871) ENSMODG00000043274 ENSMODG00000003877 FGF16 (ENSMODG00000003900) ATRX (ENSMODG00000003920) MAGT1 (ENSMODG00000003944) ENSMODG00000003953 ATP7A (ENSMODG00000004010) ENSMODG00000028942 ENSMODG00000004055 ENSMODG00000004077 Opossum MODERN SPECIES 5 TLE4 (ENSMODG00000009542) TLE1 (ENSMODG00000009352) ENSMODG00000050409 RASEF (ENSMODG00000009037) ENSMODG00000027531 FRMD3 (ENSMODG00000008623) IDNK (ENSMODG00000043310) UBQLN1 (ENSMODG00000008558) GKAP1 (ENSMODG00000008500) KIF27 (ENSMODG00000008456) ENSMODG00000024684 HNRNPK (ENSMODG00000008402) RMI1 (ENSMODG00000024692) SLC28A3 (ENSMODG00000008334) NTRK2 (ENSMODG00000008224) ENSMODG00000008211 #22 AGTPBP1 (ENSMODG00000008203) NAA35 (ENSMODG00000008181) GOLM1 (ENSMODG00000008143) ENSMODG00000036382 ENSMODG00000028316 UBAP1 (ENSMODG00000008112) KIF24 (ENSMODG00000008094) NUDT2 (ENSMODG00000049625) ENSMODG00000044213 MYORG (ENSMODG00000036994) ENSMODG00000008058 FAM219A (ENSMODG00000008045) DNAI1 (ENSMODG00000008026) CNTFR (ENSMODG00000007977) RPP25L (ENSMODG00000007961) Marsupialia_b ANCESTRAL SPECIES 11 ENSGT00390000013287.db.a ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 ENSGT00390000003364 ENSGT00940000156437 ENSGT00390000008742 ENSGT00940000157487.fb ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00390000001134.b #22 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00390000008092.a ENSGT00940000154046.b ENSGT00390000002416 ENSGT00530000067979 ENSGT00940000161008 ENSGT00390000000945 ENSGT00390000000860.b ENSGT00940000156436 ENSGT00940000158864 ENSGT00390000002564.a ENSGT00390000016210 ENSGT00940000160028.i Tasmanian devil DUPLICATION Tasmanian devil MODERN SPECIES 21 ENSSHAG00000024526 POU3F4 (ENSSHAG00000028260) #10 ENSSHAG00000013212 #11 RPS6KA6 (ENSSHAG00000013276) #12 HDX (ENSSHAG00000014376) #13 ENSSHAG00000029424 ENSSHAG00000015306 ENSSHAG00000030965 ENSSHAG00000016737 #16 ENSSHAG00000030190 #17 ENSSHAG00000021606 ZNF711 (ENSSHAG00000017110) #19 POF1B (ENSSHAG00000017166) #20 ENSSHAG00000022574 ENSSHAG00000017568 #21 ENSSHAG00000017908 #22 ENSSHAG00000001778 ENSSHAG00000005855 #23 ENSSHAG00000028295 ENSSHAG00000001527 ENSSHAG00000021389 ENSSHAG00000021578 ENSSHAG00000024178 ENSSHAG00000015276 ENSSHAG00000027152 ENSSHAG00000024191 ENSSHAG00000030292 #31 ENSSHAG00000021905 ENSSHAG00000024769 ENSSHAG00000001443 ENSSHAG00000006765 Tasmanian devil MODERN SPECIES PSAT1 (ENSSHAG00000018888) TLE4 (ENSSHAG00000017709) TLE1 (ENSSHAG00000010221) RASEF (ENSSHAG00000031366) ENSSHAG00000023779 FRMD3 (ENSSHAG00000029377) IDNK (ENSSHAG00000022655) UBQLN1 (ENSSHAG00000017673) GKAP1 (ENSSHAG00000027385) KIF27 (ENSSHAG00000017257) C9orf64 (ENSSHAG00000017219) HNRNPK (ENSSHAG00000017109) RMI1 (ENSSHAG00000017088) SLC28A3 (ENSSHAG00000016246) NTRK2 (ENSSHAG00000014304) ENSSHAG00000012689 #22 AGTPBP1 (ENSSHAG00000010276) NAA35 (ENSSHAG00000008969) ENSSHAG00000008015 ENSSHAG00000005428 KIF24 (ENSSHAG00000004186) NUDT2 (ENSSHAG00000025014) ENSSHAG00000020797 ENSSHAG00000018177 FAM219A (ENSSHAG00000026212) DNAI1 (ENSSHAG00000017763) CNTFR (ENSSHAG00000017607) RPP25L (ENSSHAG00000025426) DCTN3 (ENSSHAG00000017477) SIGMAR1 (ENSSHAG00000030227) ENSSHAG00000017339 Diprotodontia ANCESTRAL SPECIES 21 ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 ENSGT00390000003364 ENSGT00940000156437 ENSGT00390000008742 ENSGT00940000157487.fb ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157978.g ENSGT00950000182994.A.n.a.e #21 ENSGT00390000001134.b #22 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00390000008092.a ENSGT00940000154046.b ENSGT00390000002416 ENSGT00530000067979 ENSGT00940000161008 ENSGT00390000000945 ENSGT00390000000860.b ENSGT00940000156436 ENSGT00940000158864 ENSGT00390000002564.a ENSGT00390000016210 ENSGT00940000160028.i Wallaby MODERN SPECIES 3359 DACH2 (ENSMEUG00000011254) #22 Diprotodontia_a ANCESTRAL SPECIES 17 ENSGT00390000013287.db.a ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 ENSGT00390000003364 ENSGT00940000156437 ENSGT00390000008742 ENSGT00940000157487.fb.a ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00390000001134.b #22 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00390000008092.a ENSGT00940000154046.b ENSGT00390000002416 ENSGT00530000067979 ENSGT00940000161008 ENSGT00390000000945 ENSGT00390000000860.b ENSGT00940000156436 ENSGT00940000158864 ENSGT00390000002564.a ENSGT00390000016210 ENSGT00940000160028.i koala DUPLICATION koala MODERN SPECIES 153 SH3BGRL (ENSPCIG00000021959) ENSPCIG00000021957 ENSPCIG00000034797 POU3F4 (ENSPCIG00000018483) #10 RPS6KA6 (ENSPCIG00000018480) #12 HDX (ENSPCIG00000018657) #13 ENSPCIG00000011754 ENSPCIG00000036766 ENSPCIG00000002457 ENSPCIG00000032809 ENSPCIG00000002492 ZNF711 (ENSPCIG00000002535) #19 POF1B (ENSPCIG00000002558) #20 ENSPCIG00000034179 ENSPCIG00000002575 #21 ENSPCIG00000021250 #22 ENSPCIG00000037431 ENSPCIG00000000361 koala MODERN SPECIES 169 TLE1 (ENSPCIG00000021439) RASEF (ENSPCIG00000027655) ENSPCIG00000027656 FRMD3 (ENSPCIG00000027658) IDNK (ENSPCIG00000027659) UBQLN1 (ENSPCIG00000027661) GKAP1 (ENSPCIG00000027662) KIF27 (ENSPCIG00000027663) C9orf64 (ENSPCIG00000027664) HNRNPK (ENSPCIG00000027665) RMI1 (ENSPCIG00000027667) SLC28A3 (ENSPCIG00000027669) ENSPCIG00000027670 NTRK2 (ENSPCIG00000027672) ENSPCIG00000027674 #22 AGTPBP1 (ENSPCIG00000027523) NAA35 (ENSPCIG00000003183) GOLM1 (ENSPCIG00000003217) UBAP1 (ENSPCIG00000003239) KIF24 (ENSPCIG00000003254) NUDT2 (ENSPCIG00000003297) ENSPCIG00000003316 C9orf24 (ENSPCIG00000003341) FAM219A (ENSPCIG00000003348) DNAI1 (ENSPCIG00000033573) CNTFR (ENSPCIG00000021770) RPP25L (ENSPCIG00000021767) DCTN3 (ENSPCIG00000021764) ARID3C (ENSPCIG00000021763) SIGMAR1 (ENSPCIG00000032879) Common wonbat DUPLICATION Common wonbat MODERN SPECIES 256 ENSVURG00010012938 ENSVURG00010012946 POU3F4 (ENSVURG00010012952) #10 RPS6KA6 (ENSVURG00010012986) #12 HDX (ENSVURG00010012997) #13 ENSVURG00010013008 ENSVURG00010013025 ENSVURG00010013030 APOOL (ENSVURG00010013044) #16 ENSVURG00010013055 #17 ENSVURG00010013087 ZNF711 (ENSVURG00010013096) #19 POF1B (ENSVURG00010013126) #20 ENSVURG00010013146 ENSVURG00010013159 #21 ENSVURG00010013176 #22 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1066 ENSVURG00010016210 ENSVURG00010016194 ENSVURG00010016176 ENSVURG00010015787 ENSVURG00010015728 ENSVURG00010015703 ENSVURG00010015680 ENSVURG00010015676 ENSVURG00010015650 ENSVURG00010015628 ENSVURG00010015615 ENSVURG00010015601 ENSVURG00010015588 ENSVURG00010015566 ENSVURG00010015530 ENSVURG00010015506 #22 ENSVURG00010015471 ENSVURG00010015444 ENSVURG00010015431 ENSVURG00010015415 ENSVURG00010015398 ENSVURG00010015386 ENSVURG00010015373 ENSVURG00010015364 ENSVURG00010015358 ENSVURG00010015351 CNTFR (ENSVURG00010015337) RPP25L (ENSVURG00010015331) DCTN3 (ENSVURG00010015320) SIGMAR1 (ENSVURG00010015298) GALT (ENSVURG00010015282) Common wonbat MODERN SPECIES 1066 ENSVURG00010020119 ENSVURG00010020103 ENSVURG00010020081 ENSVURG00010020065 ENSVURG00010020018 ENSVURG00010019961 ENSVURG00010019946 ENSVURG00010019908 ENSVURG00010019882 ENSVURG00010019852 ENSVURG00010019847 ENSVURG00010019808 ENSVURG00010019799 ENSVURG00010019781 ENSVURG00010019747 ENSVURG00010019722 #22 ENSVURG00010019665 ENSVURG00010019628 ENSVURG00010019609 ENSVURG00010019595 ENSVURG00010019577 ENSVURG00010019561 ENSVURG00010019556 MYORG (ENSVURG00010019551) ENSVURG00010019549 ENSVURG00010019540 Platypus MODERN SPECIES 17 CHMP1B (ENSOANG00000022451) ENSOANG00000051162 BRWD3 (ENSOANG00000043415) ENSOANG00000040557 ENSOANG00000040877 POU3F4 (ENSOANG00000002241) #10 RPS6KA6 (ENSOANG00000005406) #12 HDX (ENSOANG00000041527) #13 ENSOANG00000041721 APOOL (ENSOANG00000048854) #16 ENSOANG00000007647 #17 ENSOANG00000040338 #18 ZNF711 (ENSOANG00000047231) #19 POF1B (ENSOANG00000039584) #20 CHM (ENSOANG00000007635) #21 ENSOANG00000004328 #22 ENSOANG00000008969 #23 ENSOANG00000041968 #23 ENSOANG00000008833 #31 DIAPH2 (ENSOANG00000004201) ENSOANG00000004202 PCDH19 (ENSOANG00000004203) ENSOANG00000044612 TNMD (ENSOANG00000004204) TSPAN6 (ENSOANG00000049841) SRPX2 (ENSOANG00000004207) SYTL4 (ENSOANG00000004210) TRMT12 (ENSOANG00000009987) CSTF2 (ENSOANG00000004208) ENSOANG00000049471 TRMT2B (ENSOANG00000004211) Sauria ANCESTRAL SPECIES 21 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Lepidosauria ANCESTRAL SPECIES 41 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT01060000248589.C ENSGT00390000016992 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294.j.a tuatara DUPLICATION tuatara MODERN SPECIES 1250 RPS6KA6 (ENSSPUG00000013676) #12 HDX (ENSSPUG00000013703) #13 ENSSPUG00000013734 ENSSPUG00000013746 APOOL (ENSSPUG00000013761) #16 ZNF711 (ENSSPUG00000013769) #19 POF1B (ENSSPUG00000013803) #20 ENSSPUG00000013913 #21 ENSSPUG00000013931 #22 ENSSPUG00000013939 #22 tuatara MODERN SPECIES 1250 RPS6KA6 (ENSSPUG00000013676) #12 HDX (ENSSPUG00000013703) #13 ENSSPUG00000013734 ENSSPUG00000013746 APOOL (ENSSPUG00000013761) #16 ZNF711 (ENSSPUG00000013769) #19 POF1B (ENSSPUG00000013803) #20 ENSSPUG00000013913 #21 ENSSPUG00000013931 #22 ENSSPUG00000013939 #22 Episquamata ANCESTRAL SPECIES 14 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.`b ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT00390000016992 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294.j.a ENSGT00940000154783 Laterata ANCESTRAL SPECIES 31 ENSGT00960000189950 ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.`b ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 Common wall lizard MODERN SPECIES 419 ENSPMRG00000019420 ENSPMRG00000019426 ENSPMRG00000019435 ENSPMRG00000019446 POU3F4 (ENSPMRG00000019451) #10 RPS6KA6 (ENSPMRG00000019568) #12 ENSPMRG00000020105 HDX (ENSPMRG00000020114) #13 ENSPMRG00000020137 APOOL (ENSPMRG00000020173) #16 ENSPMRG00000020196 #17 ENSPMRG00000020215 #18 ZNF711 (ENSPMRG00000020229) #19 POF1B (ENSPMRG00000020241) #20 ENSPMRG00000020265 #21 DACH2 (ENSPMRG00000020308) #22 ENSPMRG00000020340 NSDHL (ENSPMRG00000020350) ENSPMRG00000020358 ENSPMRG00000020370 VAMP7 (ENSPMRG00000020384) ENSPMRG00000020394 ENSPMRG00000020402 ENSPMRG00000020405 SPRY3 (ENSPMRG00000020410) TMLHE (ENSPMRG00000020417) ENSPMRG00000020425 ENSPMRG00000020427 ENSPMRG00000020431 ENSPMRG00000020432 ENSPMRG00000020435 Argentine black and white tegu MODERN SPECIES 75 ENSSMRG00000008553 SH3BGRL (ENSSMRG00000008544) ENSSMRG00000008543 ENSSMRG00000008541 ENSSMRG00000008539 POU3F4 (ENSSMRG00000008536) #10 RPS6KA6 (ENSSMRG00000008523) #12 HDX (ENSSMRG00000008512) #13 ENSSMRG00000008508 ENSSMRG00000008499 APOOL (ENSSMRG00000008484) #16 ENSSMRG00000008481 #17 ZNF711 (ENSSMRG00000008476) #19 POF1B (ENSSMRG00000008469) #20 ENSSMRG00000008459 #21 DACH2 (ENSSMRG00000008420) #22 ENSSMRG00000008408 NSDHL (ENSSMRG00000008401) ENSSMRG00000008386 ENSSMRG00000008384 VAMP7 (ENSSMRG00000008383) POLR1D (ENSSMRG00000008381) ENSSMRG00000008379 ENSSMRG00000008378 Toxicofera ANCESTRAL SPECIES 17 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.`b ENSGT00940000164237.ab ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT01060000248589.C ENSGT00390000016992 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294.j.a Lizard MODERN SPECIES 816 ENSACAG00000036157 ENSACAG00000042251 POU3F4 (ENSACAG00000014539) #10 ENSACAG00000014143 #12 ENSACAG00000036978 HDX (ENSACAG00000014116) #13 ENSACAG00000014086 ENSACAG00000036836 ENSACAG00000040757 ENSACAG00000042317 APOOL (ENSACAG00000014061) #16 ENSACAG00000014050 #17 ENSACAG00000031924 ZNF711 (ENSACAG00000014034) #19 ENSACAG00000013859 #21 DACH2 (ENSACAG00000013802) #22 CETN1 (ENSACAG00000042849) ENSACAG00000015812 ENSACAG00000015811 ENSACAG00000015810 VAMP7 (ENSACAG00000015766) ENSACAG00000015753 ENSACAG00000015705 SPRY3 (ENSACAG00000015693) TMLHE (ENSACAG00000015669) ENSACAG00000026028 ENSACAG00000015665 ENSACAG00000015600 ENSACAG00000015502 ENSACAG00000015500 ENSACAG00000015354 Elapidae ANCESTRAL SPECIES 14 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.ab ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.l #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT01060000248589.C ENSGT00390000016992 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294.j.a Indian cobra MODERN SPECIES 13 ENSNNAG00000018705 ENSNNAG00000018709 ENSNNAG00000018713 ENSNNAG00000018717 ENSNNAG00000018723 #10 ENSNNAG00000018731 #10 RPS6KA6 (ENSNNAG00000018764) #12 HDX (ENSNNAG00000018861) #13 ENSNNAG00000018865 APOOL (ENSNNAG00000010158) #16 ENSNNAG00000010176 #17 ENSNNAG00000010213 #18 ZNF711 (ENSNNAG00000010263) #19 POF1B (ENSNNAG00000010293) #20 ENSNNAG00000010418 #21 DACH2 (ENSNNAG00000010642) #22 ENSNNAG00000010804 NSDHL (ENSNNAG00000010830) ENSNNAG00000010868 VAMP7 (ENSNNAG00000011027) POLR1D (ENSNNAG00000011122) ENSNNAG00000011207 SPRY3 (ENSNNAG00000011696) TMLHE (ENSNNAG00000011710) ENSNNAG00000011739 ENSNNAG00000011801 DKC1 (ENSNNAG00000011820) MPP1 (ENSNNAG00000011904) ENSNNAG00000011961 FUNDC2 (ENSNNAG00000012248) CMC4 (ENSNNAG00000012270) Elapidae_a ANCESTRAL SPECIES 30 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.`b ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00990000205517 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.l #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT01060000248589.C ENSGT00390000016992 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294.j.b Acanthophiinae ANCESTRAL SPECIES 20 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.`b ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00990000205517 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A.l #21 ENSGT00390000001134.b #22 ENSGT00940000157209.ib.a ENSGT00940000158229 ENSGT00390000017860.a.a ENSGT00510000047733 ENSGT00550000075160 ENSGT01100000263512.a.a.a.a ENSGT00940000165106 ENSGT00950000183055.a.b ENSGT00530000063582.a ENSGT01060000248589.C ENSGT00390000016992 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294.j.b ENSGT00940000160294.j.a Eastern brown snake MODERN SPECIES 20 ENSPTXG00000004763 SH3BGRL (ENSPTXG00000004762) ENSPTXG00000004761 ENSPTXG00000004760 ENSPTXG00000004758 ENSPTXG00000004757 RPS6KA6 (ENSPTXG00000004755) #12 HDX (ENSPTXG00000004754) #13 ENSPTXG00000004753 ENSPTXG00000004751 APOOL (ENSPTXG00000004749) #16 ENSPTXG00000004745 #17 ZNF711 (ENSPTXG00000004741) #19 POF1B (ENSPTXG00000004728) #20 ENSPTXG00000004640 #21 DACH2 (ENSPTXG00000004636) #22 ENSPTXG00000004633 NSDHL (ENSPTXG00000004632) ENSPTXG00000004630 VAMP7 (ENSPTXG00000004629) POLR1D (ENSPTXG00000004628) ENSPTXG00000004623 ENSPTXG00000004620 TMLHE (ENSPTXG00000004616) ENSPTXG00000004614 ENSPTXG00000004612 DKC1 (ENSPTXG00000004607) MPP1 (ENSPTXG00000004606) ENSPTXG00000004605 ENSPTXG00000004604 FUNDC2 (ENSPTXG00000004596) Blue-lipped sea krait MODERN SPECIES 5114 DACH2 (ENSLLTG00000009561) #22 Archelosauria ANCESTRAL SPECIES 24 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Cryptodira ANCESTRAL SPECIES 43 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Chinese turtle MODERN SPECIES 482 HDX (ENSPSIG00000003320) #13 ENSPSIG00000003304 ENSPSIG00000003297 ENSPSIG00000001845 ENSPSIG00000001842 ENSPSIG00000003264 APOOL (ENSPSIG00000003256) #16 ENSPSIG00000003250 #17 ZNF711 (ENSPSIG00000003246) #19 POF1B (ENSPSIG00000007696) #20 ENSPSIG00000007554 #21 DACH2 (ENSPSIG00000007348) #22 Testudinoidea ANCESTRAL SPECIES 9 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Emydidae ANCESTRAL SPECIES 52 ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Three-toed box turtle MODERN SPECIES 61 ENSTMTG00000002522 ENSTMTG00000002524 ENSTMTG00000002532 ENSTMTG00000002553 POU3F4 (ENSTMTG00000002563) #10 RPS6KA6 (ENSTMTG00000003012) #12 HDX (ENSTMTG00000011687) #13 ENSTMTG00000011701 APOOL (ENSTMTG00000011730) #16 ENSTMTG00000011769 #17 ENSTMTG00000011776 ##17 ENSTMTG00000011790 #18 ZNF711 (ENSTMTG00000011815) #19 POF1B (ENSTMTG00000011849) #20 ENSTMTG00000011889 #21 DACH2 (ENSTMTG00000011929) #22 KLHL4 (ENSTMTG00000011993) #23 ENSTMTG00000012088 ENSTMTG00000012113 ENSTMTG00000012133 #31 ENSTMTG00000012165 ENSTMTG00000012181 DIAPH2 (ENSTMTG00000012608) PCDH19 (ENSTMTG00000016133) ENSTMTG00000016182 TNMD (ENSTMTG00000016200) TSPAN6 (ENSTMTG00000016253) SRPX2 (ENSTMTG00000016271) SYTL4 (ENSTMTG00000016302) TRMT12 (ENSTMTG00000016337) CSTF2 (ENSTMTG00000016370) painted turtle MODERN SPECIES 17 ENSCPBG00000014485 ENSCPBG00000014484 ENSCPBG00000014482 POU3F4 (ENSCPBG00000014480) #10 ENSCPBG00000014478 RPS6KA6 (ENSCPBG00000014477) #12 HDX (ENSCPBG00000014476) #13 ENSCPBG00000014474 ENSCPBG00000014473 APOOL (ENSCPBG00000014469) #16 ENSCPBG00000014466 #17 ENSCPBG00000014460 #18 ZNF711 (ENSCPBG00000014458) #19 POF1B (ENSCPBG00000014455) #20 ENSCPBG00000014450 #21 DACH2 (ENSCPBG00000014444) #22 EFNB1 (ENSCPBG00000014428) NALF2 (ENSCPBG00000014423) EDA (ENSCPBG00000014416) ENSCPBG00000014412 ENSCPBG00000014401 ENSCPBG00000014397 ENSCPBG00000014371 P2RY4 (ENSCPBG00000014366) ENSCPBG00000014360 ARR3 (ENSCPBG00000014349) RAB41 (ENSCPBG00000014340) ENSCPBG00000014338 PDZD11 (ENSCPBG00000014336) KIF4A (ENSCPBG00000014332) TAF9 (ENSCPBG00000014330) Testudinidae ANCESTRAL SPECIES 21 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00950000183121.b.b.b.a #17 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Goode s thornscrub tortoise MODERN SPECIES 23 SH3BGRL (ENSGEVG00005017624) ENSGEVG00005017613 ENSGEVG00005017599 ENSGEVG00005017550 ENSGEVG00005017520 POU3F4 (ENSGEVG00005017506) #10 RPS6KA6 (ENSGEVG00005017450) #12 HDX (ENSGEVG00005017426) #13 ENSGEVG00005016049 APOOL (ENSGEVG00005015811) #16 ENSGEVG00005015707 #17 ZNF711 (ENSGEVG00005015654) #19 POF1B (ENSGEVG00005015312) #20 ENSGEVG00005015222 #21 ENSGEVG00005015185 DACH2 (ENSGEVG00005015077) #22 KLHL4 (ENSGEVG00005014854) #23 ENSGEVG00005014833 ENSGEVG00005014797 ENSGEVG00005014754 #31 ENSGEVG00005014737 DIAPH2 (ENSGEVG00005014653) ENSGEVG00005014614 PCDH19 (ENSGEVG00005014494) ENSGEVG00005014455 TNMD (ENSGEVG00005014386) TSPAN6 (ENSGEVG00005014309) SRPX2 (ENSGEVG00005014233) SYTL4 (ENSGEVG00005014022) TRMT12 (ENSGEVG00005013963) CSTF2 (ENSGEVG00005013910) Abingdon island giant tortoise MODERN SPECIES 2818 DACH2 (ENSCABG00000012853) #22 KLHL4 (ENSCABG00000012846) #23 Archosauria DUPLICATION Archosauria ANCESTRAL SPECIES 15 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00940000165353 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Aves ANCESTRAL SPECIES 23 ENSGT01040000244695 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Neognathae ANCESTRAL SPECIES 22 ENSGT01040000244695 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Galloanserae ANCESTRAL SPECIES 21 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Phasianidae ANCESTRAL SPECIES 2 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.cb ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 Phasianidae_b ANCESTRAL SPECIES 24 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.cb ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 Chicken MODERN SPECIES 33 HMGN5 (ENSGALG00010019040) SH3BGRL (ENSGALG00010019018) ENSGALG00010018947 ENSGALG00010014306 ENSGALG00010014250 POU3F4 (ENSGALG00010019346) #10 RPS6KA6 (ENSGALG00010015487) #12 HDX (ENSGALG00010015449) #13 ENSGALG00010019979 ENSGALG00010018325 APOOL (ENSGALG00010018310) #16 ENSGALG00010018298 #18 ZNF711 (ENSGALG00010018274) #19 POF1B (ENSGALG00010018283) #20 CHM (ENSGALG00010018244) #21 DACH2 (ENSGALG00010018165) #22 KLHL4 (ENSGALG00010018115) #23 PCDH11X (ENSGALG00010018092) #31 DIAPH2 (ENSGALG00010018053) ENSGALG00010015765 PCDH19 (ENSGALG00010015758) TNMD (ENSGALG00010016777) TSPAN6 (ENSGALG00010016772) SRPX2 (ENSGALG00010016757) SYTL4 (ENSGALG00010016750) TRMT12 (ENSGALG00010016742) CSTF2 (ENSGALG00010016704) NOX1 (ENSGALG00010016678) ENSGALG00010016651 ENSGALG00010017548 ATP11C (ENSGALG00010017534) Japanese quail MODERN SPECIES 22 BRWD3 (ENSCJPG00005016501) ENSCJPG00005016500 SH3BGRL (ENSCJPG00005016498) ENSCJPG00005016497 ENSCJPG00005016485 ENSCJPG00005016484 POU3F4 (ENSCJPG00005016482) #10 RPS6KA6 (ENSCJPG00005016480) #12 HDX (ENSCJPG00005016479) #13 ENSCJPG00005016478 ENSCJPG00005016477 APOOL (ENSCJPG00005016476) #16 ZNF711 (ENSCJPG00005016475) #19 POF1B (ENSCJPG00005016474) #20 ENSCJPG00005016473 #21 DACH2 (ENSCJPG00005016472) #22 ENSCJPG00005016470 KLHL4 (ENSCJPG00005016469) #23 ENSCJPG00005016454 #31 DIAPH2 (ENSCJPG00005016407) PCDH19 (ENSCJPG00005016400) TNMD (ENSCJPG00005016399) TSPAN6 (ENSCJPG00005016398) SRPX2 (ENSCJPG00005016397) SYTL4 (ENSCJPG00005016396) TRMT12 (ENSCJPG00005016395) CSTF2 (ENSCJPG00005016394) NOX1 (ENSCJPG00005016393) ENSCJPG00005016392 ATP11C (ENSCJPG00005016391) MCF2 (ENSCJPG00005016390) Anatidae ANCESTRAL SPECIES 24 ENSGT00950000183107.a.b.b.x ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 Pink-footed goose MODERN SPECIES 4 ENSABRG00000007216 ENSABRG00000007220 SH3BGRL (ENSABRG00000007222) ENSABRG00000007226 ENSABRG00000007228 ENSABRG00000007234 POU3F4 (ENSABRG00000007243) #10 RPS6KA6 (ENSABRG00000007374) #12 HDX (ENSABRG00000010585) #13 ENSABRG00000010619 APOOL (ENSABRG00000010661) #16 ENSABRG00000010671 #18 ZNF711 (ENSABRG00000010688) #19 POF1B (ENSABRG00000010810) #20 ENSABRG00000010897 #21 DACH2 (ENSABRG00000011177) #22 KLHL4 (ENSABRG00000011210) #23 ENSABRG00000011299 #31 ENSABRG00000011321 DIAPH2 (ENSABRG00000011369) PCDH19 (ENSABRG00000011699) TNMD (ENSABRG00000011703) TSPAN6 (ENSABRG00000011715) SRPX2 (ENSABRG00000011731) SYTL4 (ENSABRG00000011740) TRMT12 (ENSABRG00000011753) CSTF2 (ENSABRG00000011780) NOX1 (ENSABRG00000011801) ENSABRG00000011872 ENSABRG00000011876 ATP11C (ENSABRG00000011910) Duck MODERN SPECIES 1 TENT5D (ENSAPLG00000011605) ENSAPLG00000028312 BRWD3 (ENSAPLG00000009512) ENSAPLG00000019694 SH3BGRL (ENSAPLG00000022802) ENSAPLG00000008781 ENSAPLG00000008654 RPS6KA6 (ENSAPLG00000008167) #12 HDX (ENSAPLG00000007946) #13 ENSAPLG00000007509 APOOL (ENSAPLG00000024832) #16 ENSAPLG00000007414 #18 ZNF711 (ENSAPLG00000007311) #19 POF1B (ENSAPLG00000007116) #20 ENSAPLG00000006258 #21 DACH2 (ENSAPLG00000006115) #22 KLHL4 (ENSAPLG00000005695) #23 ENSAPLG00000006804 #31 DIAPH2 (ENSAPLG00000003882) ENSAPLG00000026226 PCDH19 (ENSAPLG00000003793) ENSAPLG00000028030 SRPX2 (ENSAPLG00000008584) SYTL4 (ENSAPLG00000007671) ENSAPLG00000019209 CSTF2 (ENSAPLG00000007255) ENSAPLG00000006524 ENSAPLG00000006318 ARL13A (ENSAPLG00000031098) ATP11C (ENSAPLG00000005048) MCF2 (ENSAPLG00000004315) Neognathae_b ANCESTRAL SPECIES ENSGT01040000244695 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Neognathae_c ANCESTRAL SPECIES 29 ENSGT01050000244948.d ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 Golden eagle MODERN SPECIES 13 BRWD3 (ENSACCG00020014046) SH3BGRL (ENSACCG00020015632) ENSACCG00020015649 ENSACCG00020015657 ENSACCG00020015673 POU3F4 (ENSACCG00020015685) #10 RPS6KA6 (ENSACCG00020015923) #12 HDX (ENSACCG00020016050) #13 ENSACCG00020016065 ENSACCG00020016085 APOOL (ENSACCG00020016100) #16 ENSACCG00020016121 ZNF711 (ENSACCG00020016132) #19 POF1B (ENSACCG00020016158) #20 ENSACCG00020016178 #21 DACH2 (ENSACCG00020016193) #22 KLHL4 (ENSACCG00020016206) #23 ENSACCG00020016215 ENSACCG00020016222 #31 ENSACCG00020016226 DIAPH2 (ENSACCG00020016390) PCDH19 (ENSACCG00020016501) ENSACCG00020016502 TNMD (ENSACCG00020016505) TSPAN6 (ENSACCG00020016508) ENSACCG00020016511 SRPX2 (ENSACCG00020016523) SYTL4 (ENSACCG00020016540) TRMT12 (ENSACCG00020016542) CSTF2 (ENSACCG00020016547) NOX1 (ENSACCG00020016552) Kakapo MODERN SPECIES 1 XIAP (ENSSHBG00005000840) STAG2 (ENSSHBG00005017175) SH2D1A (ENSSHBG00005017751) TENM1 (ENSSHBG00005018127) SMARCA1 (ENSSHBG00005020233) GAB3 (ENSSHBG00005020239) ENSSHBG00005020244 VBP1 (ENSSHBG00005020255) RAB39B (ENSSHBG00005020258) ENSSHBG00005020266 VSIG1 (ENSSHBG00005020285) PSMD10 (ENSSHBG00005020289) ATG4A (ENSSHBG00005020293) ZNF711 (ENSSHBG00005020297) #19 ENSSHBG00005020304 #21 DACH2 (ENSSHBG00005020309) #22 KLHL4 (ENSSHBG00005020316) #23 ENSSHBG00005020321 #31 DIAPH2 (ENSSHBG00005020340) PCDH19 (ENSSHBG00005020369) TNMD (ENSSHBG00005020374) TSPAN6 (ENSSHBG00005020380) SRPX2 (ENSSHBG00005020391) SYTL4 (ENSSHBG00005020415) TRMT12 (ENSSHBG00005020431) CSTF2 (ENSSHBG00005020442) NOX1 (ENSSHBG00005020451) ENSSHBG00005020481 ENSSHBG00005020484 ATP11C (ENSSHBG00005020556) MCF2 (ENSSHBG00005020654) Passeriformes ANCESTRAL SPECIES 24 ENSGT01040000244695 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 Great tit MODERN SPECIES 24 TENT5D (ENSPMJG00000007841) ENSPMJG00000007839 BRWD3 (ENSPMJG00000004797) SH3BGRL (ENSPMJG00000004732) ENSPMJG00000004731 ENSPMJG00000004717 ENSPMJG00000004715 RPS6KA6 (ENSPMJG00000004676) #12 HDX (ENSPMJG00000004669) #13 ENSPMJG00000004654 APOOL (ENSPMJG00000004639) #16 ENSPMJG00000004635 #18 ZNF711 (ENSPMJG00000004632) #19 POF1B (ENSPMJG00000004629) #20 ENSPMJG00000004621 #21 DACH2 (ENSPMJG00000004572) #22 KLHL4 (ENSPMJG00000004550) #23 ENSPMJG00000004500 #31 ENSPMJG00000004443 DIAPH2 (ENSPMJG00000000927) ENSPMJG00000000903 ENSPMJG00000000875 PCDH19 (ENSPMJG00000000871) ENSPMJG00000000855 TNMD (ENSPMJG00000000852) TSPAN6 (ENSPMJG00000000848) SRPX2 (ENSPMJG00000000844) SYTL4 (ENSPMJG00000000830) TRMT12 (ENSPMJG00000000822) CSTF2 (ENSPMJG00000000799) NOX1 (ENSPMJG00000000771) Passeriformes_d ANCESTRAL SPECIES 27 ENSGT01040000244695 ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000158878 ENSGT00940000156974 ENSGT00940000159516 Flycatcher MODERN SPECIES 23 BRWD3 (ENSFALG00000004071) ENSFALG00000026282 ENSFALG00000004069 SH3BGRL (ENSFALG00000026799) ENSFALG00000014855 ENSFALG00000004060 ENSFALG00000027532 POU3F4 (ENSFALG00000028949) #10 RPS6KA6 (ENSFALG00000004051) #12 HDX (ENSFALG00000004050) #13 ENSFALG00000004029 APOOL (ENSFALG00000028762) #16 ENSFALG00000023605 #18 ZNF711 (ENSFALG00000004005) #19 ENSFALG00000003994 #21 DACH2 (ENSFALG00000003987) #22 KLHL4 (ENSFALG00000003968) #23 ENSFALG00000003954 #31 DIAPH2 (ENSFALG00000003934) PCDH19 (ENSFALG00000003922) TNMD (ENSFALG00000003912) TSPAN6 (ENSFALG00000003893) SRPX2 (ENSFALG00000003883) SYTL4 (ENSFALG00000003875) ENSFALG00000028198 CSTF2 (ENSFALG00000003859) NOX1 (ENSFALG00000003842) ENSFALG00000003833 ATP11C (ENSFALG00000003817) MCF2 (ENSFALG00000003810) F9 (ENSFALG00000003792) Passeriformes_g ANCESTRAL SPECIES 28 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000158878 ENSGT00940000156974 ENSGT00940000159516 Passeroidea ANCESTRAL SPECIES 30 ENSGT00950000183107.a.b.b ENSGT00950000182802.D ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237 ENSGT00530000063666.a #16 ENSGT00520000059318 #18 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b.e #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000158878 ENSGT00940000156974 ENSGT00940000159516 Zebra finch MODERN SPECIES 26 ENSTGUG00000023809 BRWD3 (ENSTGUG00000002561) HMGN5 (ENSTGUG00000002555) SH3BGRL (ENSTGUG00000025391) ENSTGUG00000002549 ENSTGUG00000002535 ENSTGUG00000002530 POU3F4 (ENSTGUG00000029753) #10 RPS6KA6 (ENSTGUG00000002510) #12 HDX (ENSTGUG00000002499) #13 ENSTGUG00000002481 APOOL (ENSTGUG00000002477) #16 ZNF711 (ENSTGUG00000002466) #19 POF1B (ENSTGUG00000002455) #20 ENSTGUG00000002437 #21 DACH2 (ENSTGUG00000002423) #22 KLHL4 (ENSTGUG00000002398) #23 ENSTGUG00000002396 #31 DIAPH2 (ENSTGUG00000002329) ENSTGUG00000026315 ENSTGUG00000026146 PCDH19 (ENSTGUG00000002323) TNMD (ENSTGUG00000002316) TSPAN6 (ENSTGUG00000002306) SRPX2 (ENSTGUG00000002301) SYTL4 (ENSTGUG00000002281) TRMT12 (ENSTGUG00000002280) CSTF2 (ENSTGUG00000002253) NOX1 (ENSTGUG00000021927) ATP11C (ENSTGUG00000002206) MCF2 (ENSTGUG00000002176) Common canary MODERN SPECIES 13 BRWD3 (ENSSCAG00000002422) SH3BGRL (ENSSCAG00000002723) ENSSCAG00000002728 ENSSCAG00000002734 ENSSCAG00000002744 RPS6KA6 (ENSSCAG00000002754) #12 HDX (ENSSCAG00000002764) #13 ENSSCAG00000002778 ENSSCAG00000002788 ENSSCAG00000002792 APOOL (ENSSCAG00000002799) #16 ENSSCAG00000002804 #18 ZNF711 (ENSSCAG00000002807) #19 POF1B (ENSSCAG00000002819) #20 ENSSCAG00000002831 #21 DACH2 (ENSSCAG00000002926) #22 KLHL4 (ENSSCAG00000002939) #23 ENSSCAG00000002949 ENSSCAG00000002968 #31 ENSSCAG00000002977 DIAPH2 (ENSSCAG00000003092) ENSSCAG00000003393 PCDH19 (ENSSCAG00000003401) TNMD (ENSSCAG00000003412) TSPAN6 (ENSSCAG00000003421) SRPX2 (ENSSCAG00000003426) SYTL4 (ENSSCAG00000003429) TRMT12 (ENSSCAG00000003441) CSTF2 (ENSSCAG00000003457) NOX1 (ENSSCAG00000003469) ENSSCAG00000003475 Medium ground finch MODERN SPECIES 52 CHMP1B (ENSGFOG00000013153) TENT5D (ENSGFOG00000013151) BRWD3 (ENSGFOG00000012945) ENSGFOG00000012914 SH3BGRL (ENSGFOG00000012912) ENSGFOG00000012909 ENSGFOG00000012907 ENSGFOG00000012906 RPS6KA6 (ENSGFOG00000012903) #12 HDX (ENSGFOG00000012900) #13 ENSGFOG00000012899 APOOL (ENSGFOG00000012895) #16 ENSGFOG00000012892 ZNF711 (ENSGFOG00000012889) #19 ENSGFOG00000012883 #21 DACH2 (ENSGFOG00000012878) #22 KLHL4 (ENSGFOG00000012871) #23 ENSGFOG00000012864 #31 DIAPH2 (ENSGFOG00000012503) ENSGFOG00000012475 ENSGFOG00000012471 PCDH19 (ENSGFOG00000012468) TNMD (ENSGFOG00000012465) TSPAN6 (ENSGFOG00000012462) SYTL4 (ENSGFOG00000012452) CSTF2 (ENSGFOG00000012429) NOX1 (ENSGFOG00000012400) ENSGFOG00000012393 ATP11C (ENSGFOG00000012311) MCF2 (ENSGFOG00000012080) F9 (ENSGFOG00000012055) Archosauria DUPLICATION Archosauria ANCESTRAL SPECIES ENSGT00390000001134.b.f.a #22 Aves ANCESTRAL SPECIES ENSGT00390000001134.b.f.a #22 Neognathae ANCESTRAL SPECIES ENSGT00390000001134.b.f.a #22 Galloanserae ANCESTRAL SPECIES ENSGT00390000001134.b.f.a #22 Phasianidae ANCESTRAL SPECIES ENSGT00390000001134.b.f.a #22 Phasianidae_b ANCESTRAL SPECIES ENSGT00390000001134.b.f.a #22 Turkey MODERN SPECIES 29 TENT5D (ENSMGAG00000015812) BRWD3 (ENSMGAG00000004860) SH3BGRL (ENSMGAG00000004838) ENSMGAG00000015810 ENSMGAG00000004818 ENSMGAG00000004814 RPS6KA6 (ENSMGAG00000004748) #12 HDX (ENSMGAG00000004732) #13 ENSMGAG00000021569 ENSMGAG00000004696 APOOL (ENSMGAG00000004674) #16 ENSMGAG00000020154 #18 ZNF711 (ENSMGAG00000004634) #19 POF1B (ENSMGAG00000004600) #20 ENSMGAG00000004529 #21 DACH2 (ENSMGAG00000004510) #22 KLHL4 (ENSMGAG00000004449) #23 ENSMGAG00000004445 #31 DIAPH2 (ENSMGAG00000004346) PCDH19 (ENSMGAG00000004330) TNMD (ENSMGAG00000004293) TSPAN6 (ENSMGAG00000004268) SRPX2 (ENSMGAG00000004261) SYTL4 (ENSMGAG00000004197) ENSMGAG00000004174 CSTF2 (ENSMGAG00000004139) NOX1 (ENSMGAG00000004075) ENSMGAG00000004062 ARL13A (ENSMGAG00000004193) ATP11C (ENSMGAG00000003966) MCF2 (ENSMGAG00000003860) African ostrich MODERN SPECIES 745 ENSSCUG00000010172 #22 Australian saltwater crocodile MODERN SPECIES 36 ENSCPRG00005010861 ENSCPRG00005010857 ENSCPRG00005010856 POU3F4 (ENSCPRG00005010851) #10 RPS6KA6 (ENSCPRG00005010212) #12 HDX (ENSCPRG00005010091) #13 ENSCPRG00005010080 ENSCPRG00005010059 APOOL (ENSCPRG00005010049) #16 ENSCPRG00005010046 ENSCPRG00005010043 ##17 ENSCPRG00005010030 #18 ZNF711 (ENSCPRG00005010021) #19 POF1B (ENSCPRG00005009967) #20 ENSCPRG00005009955 #21 DACH2 (ENSCPRG00005009926) #22 ENSCPRG00005009915 #23 ENSCPRG00005009893 #23 ENSCPRG00005009888 ENSCPRG00005009884 ENSCPRG00005009881 #31 ENSCPRG00005009869 ENSCPRG00005009864 DIAPH2 (ENSCPRG00005009840) PCDH19 (ENSCPRG00005009823) TNMD (ENSCPRG00005009818) TSPAN6 (ENSCPRG00005009808) SRPX2 (ENSCPRG00005009782) SYTL4 (ENSCPRG00005009775) TRMT12 (ENSCPRG00005009760) CSTF2 (ENSCPRG00005009730) Archosauria ANCESTRAL SPECIES ENSGT00390000001134.b.f.b #22 Aves ANCESTRAL SPECIES ENSGT00390000001134.b.f.b #22 African ostrich MODERN SPECIES 537 ENSSCUG00000004613 #22 Anura ANCESTRAL SPECIES 19 ENSGT01050000244948.d ENSGT00950000183107.a.b.b ENSGT00940000156017 ENSGT00390000011425.A ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #10 ENSGT00940000159242 #12 ENSGT00390000008591 #13 ENSGT00940000164237.t ENSGT00530000063666.a #16 ENSGT00990000205517 ENSGT00940000159611 #19 ENSGT00390000000141 #20 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00940000159818 #23 ENSGT00940000158335 #31 ENSGT00390000008142 ENSGT00940000159999 ENSGT00940000160111 ENSGT00940000157196 ENSGT00390000014020 ENSGT00940000157996 ENSGT00480000042679.a ENSGT00940000159162 ENSGT00940000157822 ENSGT00940000153737.a ENSGT00500000044890.b ENSGT00940000159092 ENSGT00940000159149 Frog MODERN SPECIES 8 sh3bgrl (ENSXETG00000044909) ENSXETG00000042644 slc9a2l (ENSXETG00000014501) XB5726496 [provisional:tmem182] (ENSXETG00000026233) pou3f4 (ENSXETG00000014504) #10 rps6ka6 (ENSXETG00000014506) #12 hdx (ENSXETG00000014523) #13 ENSXETG00000017815 satl1 (ENSXETG00000039007) ##17 apool (ENSXETG00000017816) #18 ENSXETG00000046191 znf711 (ENSXETG00000017817) #19 pof1b (ENSXETG00000017818) #20 ENSXETG00000046316 chm (ENSXETG00000017820) #21 dach2 (ENSXETG00000015905) #22 klhl4 (ENSXETG00000015861) #23 ENSXETG00000017444 ENSXETG00000036143 ENSXETG00000045422 pcdh11x (ENSXETG00000002370) #31 ENSXETG00000045078 utp14a (ENSXETG00000007465) zdhhc9 (ENSXETG00000040042) sash3 (ENSXETG00000039771) xpnpep2 (ENSXETG00000007460) pgk1 (ENSXETG00000007447) septin6 (ENSXETG00000007443) ENSXETG00000038689 sowahd (ENSXETG00000041798) upf3b (ENSXETG00000007440) Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 12 ENSLLEG00000012552 ENSLLEG00000012590 ENSLLEG00000012610 POU3F4 (ENSLLEG00000012630) #10 RPS6KA6 (ENSLLEG00000012752) #12 HDX (ENSLLEG00000013463) #13 ENSLLEG00000013536 ENSLLEG00000013624 ENSLLEG00000013835 APOOL (ENSLLEG00000014000) #16 ENSLLEG00000014335 ZNF711 (ENSLLEG00000014379) #19 POF1B (ENSLLEG00000014478) #20 ENSLLEG00000014702 ENSLLEG00000014758 #21 ENSLLEG00000015215 #22 ENSLLEG00000015308 #22 ENSLLEG00000015579 KLHL4 (ENSLLEG00000015616) #23 ENSLLEG00000015773 ENSLLEG00000015798 #31 ENSLLEG00000015824 ENSLLEG00000015861 ENSLLEG00000015878 ENSLLEG00000015901 ENSLLEG00000015923 ENSLLEG00000015941 ENSLLEG00000015954 ENSLLEG00000015976 ZDHHC9 (ENSLLEG00000016126) SASH3 (ENSLLEG00000016358) Leishan spiny toad MODERN SPECIES 12 ENSLLEG00000012590 ENSLLEG00000012610 POU3F4 (ENSLLEG00000012630) #10 RPS6KA6 (ENSLLEG00000012752) #12 HDX (ENSLLEG00000013463) #13 ENSLLEG00000013536 ENSLLEG00000013624 ENSLLEG00000013835 APOOL (ENSLLEG00000014000) #16 ENSLLEG00000014335 ZNF711 (ENSLLEG00000014379) #19 POF1B (ENSLLEG00000014478) #20 ENSLLEG00000014702 ENSLLEG00000014758 #21 ENSLLEG00000015215 #22 ENSLLEG00000015308 #22 ENSLLEG00000015579 KLHL4 (ENSLLEG00000015616) #23 ENSLLEG00000015773 ENSLLEG00000015798 #31 ENSLLEG00000015824 ENSLLEG00000015861 ENSLLEG00000015878 ENSLLEG00000015901 ENSLLEG00000015923 ENSLLEG00000015941 ENSLLEG00000015954 ENSLLEG00000015976 ZDHHC9 (ENSLLEG00000016126) SASH3 (ENSLLEG00000016358) XPNPEP2 (ENSLLEG00000016456) Actinopterygii ANCESTRAL SPECIES 883 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 Reedfish MODERN SPECIES 3 ZMYM3 (ENSECRG00000010677) nono (ENSECRG00000010656) ENSECRG00000010617 mtnr1c (ENSECRG00000010596) frmd7 (ENSECRG00000010560) ENSECRG00000010543 ENSECRG00000010502 ENSECRG00000010490 COL4A5 (ENSECRG00000010455) ENSECRG00000010433 taf9 (ENSECRG00000010426) ENSECRG00000010419 TMLHE (ENSECRG00000010408) chm (ENSECRG00000010166) #21 ENSECRG00000010090 dacha (ENSECRG00000009802) #22 ankrd46b (ENSECRG00000009745) ENSECRG00000009730 ENSECRG00000009719 zgc:109889 (ENSECRG00000009707) ENSECRG00000009700 ENSECRG00000009692 NEXMIF (ENSECRG00000009672) abcb7 (ENSECRG00000009647) uprt (ENSECRG00000009626) fgf16 (ENSECRG00000009608) ENSECRG00000009585 hdac8 (ENSECRG00000009568) rps4x (ENSECRG00000009548) zdhhc15b (ENSECRG00000009527) ENSECRG00000009504 Neopterygii ANCESTRAL SPECIES 334 ENSGT00940000178201 ENSGT00940000155658 ENSGT00940000160896 ENSGT00940000157904 ENSGT00940000158972 ENSGT00950000182994.A #21 ENSGT00390000001134.b #22 ENSGT00390000014072.A ENSGT00940000159922.a.a ENSGT01060000248594.e.a Spotted gar MODERN SPECIES 673 rdh12 (ENSLOCG00000014184) vti1b (ENSLOCG00000014187) arg2 (ENSLOCG00000014189) rbm25b (ENSLOCG00000014196) slc39a9 (ENSLOCG00000014198) PLEKHD1 (ENSLOCG00000014201) ENSLOCG00000014208 ENSLOCG00000014211 smoc1 (ENSLOCG00000014213) dock11 (ENSLOCG00000014215) ENSLOCG00000014258 STK26 (ENSLOCG00000014261) frmd7 (ENSLOCG00000014264) chm (ENSLOCG00000014266) #21 ENSLOCG00000014274 dacha (ENSLOCG00000014279) #22 cnpy3 (ENSLOCG00000014285) alg13 (ENSLOCG00000014291) trpc5a (ENSLOCG00000014299) ENSLOCG00000014305 ccnb3 (ENSLOCG00000014317) ENSLOCG00000014323 tnfsf10l (ENSLOCG00000014326) CLCN5 (ENSLOCG00000014329) SHROOM4 (ENSLOCG00000014331) bmp15 (ENSLOCG00000014334) COL4A6 (ENSLOCG00000014335) COL4A5 (ENSLOCG00000014368) IRS4 (ENSLOCG00000017479) gc2 (ENSLOCG00000014403) rasl11a (ENSLOCG00000014424) Osteoglossocephalai DUPLICATION Osteoglossocephalai DUPLICATION Osteoglossocephalai ANCESTRAL SPECIES ENSGT00390000001134.b.`b.a #22 Clupeocephala ANCESTRAL SPECIES ENSGT00390000001134.b.`b.a #22 Euteleosteomorpha ANCESTRAL SPECIES 189 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000156167.a ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a ENSGT00940000155150.b.b ENSGT00940000166125 ENSGT01060000249180 ENSGT00390000006178 ENSGT00940000153727.b ENSGT00940000174470 ENSGT00940000165810 ENSGT00940000157482.f ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 Acanthomorphata ANCESTRAL SPECIES 236 ENSGT00390000000703 ENSGT00940000159769.a.b ENSGT00390000001803 ENSGT00390000000002.a.a.b ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000164917 ENSGT00940000165810 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00940000178567 Euacanthomorphacea ANCESTRAL SPECIES 111 ENSGT00390000009786 ENSGT00940000164917 ENSGT00940000165810 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00940000178567 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157213 Pinecone sodierfish MODERN SPECIES 5 taf9 (ENSMMDG00005014203) ARRB2 (ENSMMDG00005009850) ap4m1 (ENSMMDG00005009767) ENSMMDG00005009765 siah2l (ENSMMDG00005009764) ENSMMDG00005009761 ENSMMDG00005009759 ENSMMDG00005009743 ENSMMDG00005009738 APBB3 (ENSMMDG00005009731) ENSMMDG00005009727 camk2a (ENSMMDG00005009412) ENSMMDG00005009405 rps14 (ENSMMDG00005009402) chm (ENSMMDG00005009391) #21 ENSMMDG00005009380 #22 ENSMMDG00005009378 ENSMMDG00005009377 ENSMMDG00005009375 ndufa2 (ENSMMDG00005009372) ADAMTS2 (ENSMMDG00005009332) ENSMMDG00005009316 ENSMMDG00005009315 ENSMMDG00005009314 ENSMMDG00005009312 ENSMMDG00005009311 mat2b (ENSMMDG00005009309) ttc1 (ENSMMDG00005009307) ENSMMDG00005009305 slc23a1 (ENSMMDG00005009303) pfdn1 (ENSMMDG00005009301) Percomorphaceae ANCESTRAL SPECIES 97 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00940000178567 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917 ENSGT00390000009786 ENSGT00940000157213 Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263474.a.b.b.o.b.a ENSGT01100000263559.B ENSGT00940000153092 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a ENSGT01100000263483.F.a ENSGT01100000263483.E.a.c.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Percomorphaceae_C ANCESTRAL SPECIES 10 ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.b.b ENSGT00990000211813 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.a ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT01100000263483.F.b.a.a.c.a ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 Eupercaria ANCESTRAL SPECIES 26 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.a.a.b ENSGT00990000211813 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d ENSGT01100000263483.B.d ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 Tetraodontidae ANCESTRAL SPECIES 6 ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000156944.a.a ENSGT00940000170476 ENSGT00950000183089.c.a.k.b.b ENSGT00990000211813 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00390000007635 ENSGT00950000182787.E.d.e.a ENSGT00940000163584.b.a.a ENSGT00940000159431 ENSGT00940000167475 ENSGT00940000158544 ENSGT00390000003426 ENSGT00940000160017 ENSGT00410000025556.a.a.a.a Fugu MODERN SPECIES 6 ENSTRUG00000002390 ponzr2 (ENSTRUG00000031606) ENSTRUG00000020098 ADRA1B (ENSTRUG00000008130) ENSTRUG00000023091 ENSTRUG00000024270 ENSTRUG00000008086 ENSTRUG00000020675 ENSTRUG00000020131 ENSTRUG00000029472 APBB3 (ENSTRUG00000007757) ENSTRUG00000007664 camk2a (ENSTRUG00000007478) rps14 (ENSTRUG00000007440) chm (ENSTRUG00000007170) #21 ENSTRUG00000006865 #22 ENSTRUG00000006273 ndufa2 (ENSTRUG00000022054) ENSTRUG00000030704 ENSTRUG00000020956 ENSTRUG00000004733 ENSTRUG00000002871 ENSTRUG00000023438 zgc:77151 (ENSTRUG00000024913) DBN1 (ENSTRUG00000001232) ENSTRUG00000020514 GRK6 (ENSTRUG00000001036) nop16 (ENSTRUG00000020255) ENSTRUG00000000958 WWC1 (ENSTRUG00000000744) rars1 (ENSTRUG00000000601) Tetraodon DUPLICATION Tetraodon MODERN SPECIES 22 ENSTNIG00000007598 zmat2 (ENSTNIG00000007599) lcp2a (ENSTNIG00000001645) FOXI2 (ENSTNIG00000001292) ENSTNIG00000000447 ENSTNIG00000007600 ADRA1B (ENSTNIG00000007601) ENSTNIG00000007602 ENSTNIG00000007603 ENSTNIG00000000699 APBB3 (ENSTNIG00000007604) ENSTNIG00000007605 camk2a (ENSTNIG00000007606) rps14 (ENSTNIG00000007607) chm (ENSTNIG00000007608) #21 ENSTNIG00000007609 #22 ENSTNIG00000000702 ENSTNIG00000007610 ENSTNIG00000007611 ENSTNIG00000007612 ENSTNIG00000000432 ENSTNIG00000007613 DBN1 (ENSTNIG00000007614) GRK6 (ENSTNIG00000007615) nop16 (ENSTNIG00000007616) ARL10 (ENSTNIG00000001494) WWC1 (ENSTNIG00000007617) ENSTNIG00000007618 rars1 (ENSTNIG00000007619) ENSTNIG00000007620 HEPACAM (ENSTNIG00000007621) Tetraodon MODERN SPECIES 26 dnd1 (ENSTNIG00000004367) hars (ENSTNIG00000004368) dhx9 (ENSTNIG00000004369) dusp19b (ENSTNIG00000004370) ENSTNIG00000004372 ENSTNIG00000004373 ENSTNIG00000001590 SMURF1 (ENSTNIG00000004378) FSCN1 (ENSTNIG00000004379) ENSTNIG00000004383 zbtb14 (ENSTNIG00000004384) ENSTNIG00000004385 ENSTNIG00000004386 ITGA5 (ENSTNIG00000004387) fbxo2 (ENSTNIG00000004388) ENSTNIG00000004391 #22 ik (ENSTNIG00000004392) ndufa2 (ENSTNIG00000004393) spock3 (ENSTNIG00000004396) ugt8 (ENSTNIG00000004397) ENSTNIG00000004399 ENSTNIG00000002393 cdc42ep3 (ENSTNIG00000004401) ENSTNIG00000004402 ENSTNIG00000004404 ENSTNIG00000001197 myh11a (ENSTNIG00000004405) ENSTNIG00000004406 ENSTNIG00000004407 SHISA2 (ENSTNIG00000000624) EIF4A1 (ENSTNIG00000004408) Eupecaria_A ANCESTRAL SPECIES 25 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.a.a.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d ENSGT01100000263483.B.d ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 Eupecaria_B ANCESTRAL SPECIES 25 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.a.a.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d.b ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Eupecaria_C ANCESTRAL SPECIES 37 ENSGT00670000098179.d.a ENSGT00530000063371.C.a ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Eupercaria_incertae_sedis ANCESTRAL SPECIES 73 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Large yellow croaker MODERN SPECIES 493 ENSLCRG00005017951 ENSLCRG00005017952 zgc:110540 (ENSLCRG00005017961) pfdn1 (ENSLCRG00005017964) ttc1 (ENSLCRG00005017965) ENSLCRG00005017967 ENSLCRG00005017996 ENSLCRG00005018008 ENSLCRG00005018011 ENSLCRG00005018021 ndufa2 (ENSLCRG00005018465) ENSLCRG00005018466 camk2a (ENSLCRG00005018469) rps14 (ENSLCRG00005018488) chm (ENSLCRG00005018490) #21 ENSLCRG00005018494 #22 ik (ENSLCRG00005018499) ik (ENSLCRG00005018512) APBB3 (ENSLCRG00005018515) ENSLCRG00005018518 ENSLCRG00005018519 ENSLCRG00005018520 ENSLCRG00005018522 ENSLCRG00005018523 ENSLCRG00005018524 ENSLCRG00005018525 ENSLCRG00005018526 ENSLCRG00005018528 ENSLCRG00005018529 ENSLCRG00005018530 ENSLCRG00005018531 European seabass MODERN SPECIES 98 ENSDLAG00005027812 ENSDLAG00005033746 ENSDLAG00005030317 slbp2 (ENSDLAG00005032554) ENSDLAG00005027295 lcp2a (ENSDLAG00005034026) ENSDLAG00005029863 nhp2 (ENSDLAG00005002668) ENSDLAG00005033684 ENSDLAG00005011738 ENSDLAG00005016530 ENSDLAG00005003750 ENSDLAG00005002550 ENSDLAG00005035022 ENSDLAG00005029478 #21 ENSDLAG00005032864 #22 ENSDLAG00005034266 ENSDLAG00005017283 ENSDLAG00005030966 ENSDLAG00005027567 ENSDLAG00005029413 ENSDLAG00005026475 ENSDLAG00005029950 ENSDLAG00005033680 ENSDLAG00005002965 ENSDLAG00005002942 ENSDLAG00005030836 ENSDLAG00005032627 ENSDLAG00005030247 ENSDLAG00005034921 ENSDLAG00005013011 Gilthead seabream MODERN SPECIES 4 ENSSAUG00010001741 nhp2 (ENSSAUG00010001745) ponzr2 (ENSSAUG00010001750) ENSSAUG00010001760 ENSSAUG00010001768 ADRA1B (ENSSAUG00010001773) ENSSAUG00010001779 ENSSAUG00010001786 ENSSAUG00010001788 ENSSAUG00010001795 APBB3 (ENSSAUG00010001805) ENSSAUG00010001815 camk2a (ENSSAUG00010001827) rps14 (ENSSAUG00010001845) chm (ENSSAUG00010001868) #21 ENSSAUG00010001994 #22 ENSSAUG00010002007 NDUFA2 (ENSSAUG00010002150) ENSSAUG00010002166 ENSSAUG00010002210 ENSSAUG00010002212 ENSSAUG00010002214 ENSSAUG00010002215 ENSSAUG00010002218 ENSSAUG00010002219 ENSSAUG00010002221 ENSSAUG00010002223 ENSSAUG00010002226 ENSSAUG00010001492 ENSSAUG00010001508 ENSSAUG00010001526 Perciformes ANCESTRAL SPECIES 29 ENSGT00940000165075.a.a ENSGT00670000098179.d.a ENSGT00530000063371.C.a ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d.b ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.c.a ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Perciformes_a ANCESTRAL SPECIES 67 ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00390000009786 ENSGT00940000157213 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d.b Pike perch MODERN SPECIES 492 rps14 (ENSSLUG00000003823) chm (ENSSLUG00000003841) #21 ENSSLUG00000004000 ENSSLUG00000004006 ENSSLUG00000004011 #22 Channel bull blenny MODERN SPECIES 5 ENSCGOG00000012657 ENSCGOG00000012649 ENSCGOG00000012646 APBB3 (ENSCGOG00000012643) ENSCGOG00000012641 camk2a (ENSCGOG00000005343) rps14 (ENSCGOG00000005146) chm (ENSCGOG00000005117) #21 DACH2 (ENSCGOG00000005112) #22 ENSCGOG00000004578 ENSCGOG00000004567 ndufa2 (ENSCGOG00000004564) ENSCGOG00000004385 ENSCGOG00000004379 ADRA1B (ENSCGOG00000004312) ENSCGOG00000004302 ENSCGOG00000004297 nhp2 (ENSCGOG00000004276) ENSCGOG00000004265 ENSCGOG00000004262 lcp2a (ENSCGOG00000004232) zmat2 (ENSCGOG00000004203) slbp2 (ENSCGOG00000004177) fam53c (ENSCGOG00000004169) Percomorphaceae_D ANCESTRAL SPECIES 24 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b.x ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT00990000211813 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00940000153727.b ENSGT01100000263483.E.a.c.a ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.c.a ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Anabantaria ANCESTRAL SPECIES 28 ENSGT00980000198670 ENSGT00940000159929 ENSGT00950000182887.C.a.a.b.a.a ENSGT00940000155097 ENSGT00940000164078.a.b.b ENSGT00940000164327.a ENSGT00940000159087 ENSGT00940000157342.c.b ENSGT00950000183116.b.a.a.b.a.b.m.b ENSGT00940000163509.a.b.w.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.c.a ENSGT01100000263483.B.d ENSGT01100000263483.E.a.c.a ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917.c.a ENSGT00950000182953.C.d Anabantoidei ANCESTRAL SPECIES 31 ENSGT00890000139472 ENSGT00980000198670 ENSGT00940000159929 ENSGT00950000182887.C.a.a.b.a.a ENSGT00940000155097 ENSGT00940000164078.a.b.b ENSGT00940000164327.a ENSGT00940000159087 ENSGT00940000157342.c.b ENSGT00950000183116.b.a.a.b.a.b.m.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000164917.c.b ENSGT00940000165810 ENSGT00940000157692 ENSGT00390000009786 ENSGT00940000157213 ENSGT00950000182953.C.d ENSGT00390000006721 Climbing perch MODERN SPECIES 1 ENSATEG00000012709 ENSATEG00000013149 ENSATEG00000013184 ENSATEG00000013238 ENSATEG00000013246 ENSATEG00000026767 ENSATEG00000027537 ENSATEG00000029148 ENSATEG00000027994 ENSATEG00000026522 ENSATEG00000027682 ENSATEG00000013567 ENSATEG00000013578 ENSATEG00000013591 ENSATEG00000013635 #21 ENSATEG00000013642 #22 ENSATEG00000013667 ENSATEG00000013837 ENSATEG00000013888 ENSATEG00000026580 ENSATEG00000014064 ENSATEG00000014085 ENSATEG00000014142 ENSATEG00000014200 ENSATEG00000026611 ENSATEG00000014246 ENSATEG00000014274 ENSATEG00000014291 ENSATEG00000014313 ENSATEG00000014319 ENSATEG00000014353 Siamese fighting fish MODERN SPECIES 5 slc23a1 (ENSBSLG00000017743) ENSBSLG00000018522 ENSBSLG00000018525 ttc1 (ENSBSLG00000018531) pfdn1 (ENSBSLG00000018540) PWWP2A (ENSBSLG00000018547) ENSBSLG00000018576 zgc:110540 (ENSBSLG00000018915) ENSBSLG00000018946 ENSBSLG00000018972 ENSBSLG00000019333 ENSBSLG00000019347 ENSBSLG00000019350 chm (ENSBSLG00000019370) #21 ENSBSLG00000019385 #22 ENSBSLG00000019467 ENSBSLG00000019791 ndufa2 (ENSBSLG00000019805) ENSBSLG00000019898 rps14 (ENSBSLG00000020356) camk2a (ENSBSLG00000020377) sra1 (ENSBSLG00000020520) ENSBSLG00000020932 APBB3 (ENSBSLG00000021089) ENSBSLG00000002275 ENSBSLG00000002437 nipal4 (ENSBSLG00000002749) ins (ENSBSLG00000002780) ENSBSLG00000002838 taf9 (ENSBSLG00000002846) Zig-zag eel MODERN SPECIES 35 ENSMAMG00000027861 ENSMAMG00000026773 ENSMAMG00000024385 ENSMAMG00000027781 ENSMAMG00000025160 ENSMAMG00000012274 ENSMAMG00000012286 ENSMAMG00000012359 ENSMAMG00000012377 ENSMAMG00000012410 ENSMAMG00000012432 #21 ENSMAMG00000025221 ENSMAMG00000012448 ENSMAMG00000012463 ENSMAMG00000024939 ENSMAMG00000027349 #22 ENSMAMG00000012499 ENSMAMG00000024319 ENSMAMG00000012552 ENSMAMG00000012570 ENSMAMG00000012618 ENSMAMG00000012634 ENSMAMG00000012776 ENSMAMG00000012824 ENSMAMG00000012906 ENSMAMG00000012964 ENSMAMG00000012978 ENSMAMG00000012998 ENSMAMG00000013026 ENSMAMG00000013116 ENSMAMG00000013146 Carangaria ANCESTRAL SPECIES 24 ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b.x ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT00990000211813 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 Pleuronectoidei ANCESTRAL SPECIES 94 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917.c.a ENSGT00390000006721 ENSGT00390000009786 ENSGT00940000157213 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.F.b.a.a.d ENSGT00940000157138.b ENSGT00390000000703 ENSGT00940000155150.b.b ENSGT00390000001803 ENSGT00390000000002.a.a.b Turbot MODERN SPECIES 16 ENSSMAG00000032239 MYO7A (ENSSMAG00000015416) ompb (ENSSMAG00000015574) ENSSMAG00000015509 slc35f2 (ENSSMAG00000015633) ENSSMAG00000015644 ENSSMAG00000015686 ENSSMAG00000015721 ENSSMAG00000015736 ENSSMAG00000015748 ENSSMAG00000015767 ENSSMAG00000022744 ENSSMAG00000031157 ENSSMAG00000015824 ENSSMAG00000015937 #21 ENSSMAG00000033903 #22 ENSSMAG00000015964 ENSSMAG00000025840 ENSSMAG00000016034 ENSSMAG00000016061 ENSSMAG00000016089 ENSSMAG00000016147 ENSSMAG00000015593 ENSSMAG00000016175 ENSSMAG00000016237 ENSSMAG00000016252 ENSSMAG00000010748 ENSSMAG00000037071 ENSSMAG00000027676 ENSSMAG00000038016 ENSSMAG00000030033 Carangaria_A ANCESTRAL SPECIES 93 ENSGT00940000159345 ENSGT00940000163509.a.b.x ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917.c.b Barramundi perch MODERN SPECIES 438 ADRA1B (ENSLCAG00010019502) ENSLCAG00010019498 ENSLCAG00010019488 ENSLCAG00010019481 ENSLCAG00010019473 ENSLCAG00010019472 ENSLCAG00010019471 APBB3 (ENSLCAG00010019467) ENSLCAG00010019464 camk2a (ENSLCAG00010016300) rps14 (ENSLCAG00010015696) ENSLCAG00010015680 ENSLCAG00010015677 #22 ik (ENSLCAG00010015619) ENSLCAG00010015568 ENSLCAG00010015562 ENSLCAG00010015558 ENSLCAG00010015557 ENSLCAG00010015546 ENSLCAG00010015528 ENSLCAG00010015505 zgc:110540 (ENSLCAG00010015496) ENSLCAG00010015491 ENSLCAG00010015488 slc23a1 (ENSLCAG00010015452) mat2b (ENSLCAG00010015443) pfdn1 (ENSLCAG00010015440) ttc1 (ENSLCAG00010015436) Seriola ANCESTRAL SPECIES 124 ENSGT00940000156944.a.a ENSGT00950000183089.c.a.k.b.b ENSGT00940000163509.a.b.x ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b.a ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.a.c.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.E.a.c.a.c.a ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 Greater amberjack MODERN SPECIES 295 ENSSDUG00000023347 ENSSDUG00000023344 ENSSDUG00000023340 ADRA1B (ENSSDUG00000023338) ENSSDUG00000023323 ENSSDUG00000023320 ENSSDUG00000023314 APBB3 (ENSSDUG00000023306) ENSSDUG00000023303 camk2a (ENSSDUG00000023299) rps14 (ENSSDUG00000023297) chm (ENSSDUG00000023290) #21 ENSSDUG00000023288 ENSSDUG00000023286 ENSSDUG00000023280 ENSSDUG00000023259 #22 ENSSDUG00000023254 ndufa2 (ENSSDUG00000023250) ENSSDUG00000023241 ENSSDUG00000023239 ENSSDUG00000023236 ENSSDUG00000023226 ENSSDUG00000023208 ENSSDUG00000023185 ttc1 (ENSSDUG00000023178) pfdn1 (ENSSDUG00000023175) mat2b (ENSSDUG00000023170) slc23a1 (ENSSDUG00000023161) ENSSDUG00000023157 ENSSDUG00000023151 zgc:110540 (ENSSDUG00000023126) Yellowtail amberjack DUPLICATION Yellowtail amberjack MODERN SPECIES 2142 ENSSLDG00000017869 ENSSLDG00000017879 #22 Yellowtail amberjack MODERN SPECIES 1941 ENSSLDG00000003452 #22 Ovalentaria ANCESTRAL SPECIES 11 ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.b.a.a.a.a.b.m.a ENSGT01100000263504.a.b.b.b.a.a.ab.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Atherinomorphae ANCESTRAL SPECIES 66 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917.d ENSGT00390000009786 ENSGT00940000157213 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00940000178567 Cyprinodontiformes ANCESTRAL SPECIES 35 ENSGT00940000162761.b.b.a.c.a.i.b ENSGT00940000162761.b.b.b.a.b ENSGT00940000162761.b.b.a.c.b.b.d ENSGT00940000167172.a ENSGT00940000159812 ENSGT00980000198670 ENSGT00940000159929 ENSGT00950000182887.C.a.a.b.a.a ENSGT00940000164078.a.b.b ENSGT00940000155097 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00940000162761.b.b.a.c.b.b.c ENSGT00940000162761.b.b.a.c.b.b.d ENSGT00940000167172.a ENSGT00940000159812 ENSGT00980000198670 ENSGT00940000159929 ENSGT00950000182887.C.a.a.b.a.a ENSGT00940000164078.a.b.b ENSGT00940000155097 ENSGT01100000263483.E.a.c.a.a.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b NAME_4 ANCESTRAL SPECIES 324 ENSGT01100000263483.E.a.c.a.a.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b.i Sheepshead minnow MODERN SPECIES 1527 ENSCVAG00000019294 camk2a (ENSCVAG00000019228) rps14 (ENSCVAG00000019176) chm (ENSCVAG00000019162) #21 ENSCVAG00000019150 #22 ENSCVAG00000019137 ndufa2 (ENSCVAG00000019088) ENSCVAG00000019082 Mummichog MODERN SPECIES 553 APBB3 (ENSFHEG00000003263) ENSFHEG00000003267 ENSFHEG00000003275 ENSFHEG00000003281 rps14 (ENSFHEG00000003291) ENSFHEG00000003352 #21 DACH2 (ENSFHEG00000003512) #22 ndufa2 (ENSFHEG00000003533) ik (ENSFHEG00000003540) ENSFHEG00000003552 ENSFHEG00000003556 ENSFHEG00000003561 ENSFHEG00000003569 slc23a1 (ENSFHEG00000003577) PWWP2A (ENSFHEG00000003582) ENSFHEG00000003628 zgc:110540 (ENSFHEG00000003633) pfdn1 (ENSFHEG00000003645) ttc1 (ENSFHEG00000003662) ENSFHEG00000003705 ENSFHEG00000003735 Ovalentaria_B ANCESTRAL SPECIES 16 ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b.m ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.b.a.a.a.a.b.m.a ENSGT01100000263504.a.b.b.b.a.a.ab.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Cichlidae ANCESTRAL SPECIES 4 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b.m ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.E.a.c.a.b.a.a.b.a.a.a.a ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Pseudocrenilabrinae ANCESTRAL SPECIES 14 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b.i.b ENSGT00940000163509.a.b.i.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.b.a.c.a.b ENSGT01100000263483.E.a.c.b.a.c.a.a ENSGT01100000263483.E.a.c.b.a.c.b.a ENSGT01100000263483.E.a.c.b.a.c.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.E.a.c.a.b.a.a.b.a.a.a.a ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Nile tilapia MODERN SPECIES 1 ENSONIG00000017862 ENSONIG00000026809 ENSONIG00000028803 APBB3 (ENSONIG00000017851) ENSONIG00000017849 camk2a (ENSONIG00000017842) rps14 (ENSONIG00000017838) chm (ENSONIG00000017832) #21 ENSONIG00000021216 ENSONIG00000033957 ENSONIG00000030223 ENSONIG00000017828 ENSONIG00000021215 ENSONIG00000040334 ENSONIG00000037317 ENSONIG00000017827 #22 ik (ENSONIG00000017825) ndufa2 (ENSONIG00000041745) ENSONIG00000017819 ENSONIG00000036321 ENSONIG00000031732 ENSONIG00000041991 mat2b (ENSONIG00000017816) slc23a1 (ENSONIG00000017809) PWWP2A (ENSONIG00000017808) ENSONIG00000017801 ENSONIG00000038957 zgc:110540 (ENSONIG00000017798) pfdn1 (ENSONIG00000017797) ttc1 (ENSONIG00000017795) ENSONIG00000027667 Pseudocrenilabrinae_A ANCESTRAL SPECIES 22 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b.i.b ENSGT00940000163509.a.b.i.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.b.a.c.a.b ENSGT01100000263483.E.a.c.b.a.c.a.a ENSGT01100000263483.E.a.c.b.a.c.b.a ENSGT01100000263483.E.a.c.b.a.c.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.E.a.c.a.b.a.a.b.a.a.a.a.a.a ENSGT01090000260059.a.b.b.a.a.a.a.b.b.a.a.d ENSGT01050000244864.A.a.b.a.b.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d Haplochromini ANCESTRAL SPECIES 8 ENSGT00940000156944.a.a ENSGT01020000230360.d.f ENSGT01100000263506.a.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b.m ENSGT00940000163509.a.b.i.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.b.a.c.a.b ENSGT01100000263483.E.a.c.b.a.c.a.a ENSGT01100000263483.E.a.c.b.a.c.b.a ENSGT01100000263483.E.a.c.b.a.c.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917.d ENSGT00390000009786 ENSGT00940000157213 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT01050000244864.A.a.b.a.b.d Haplochromini_A ANCESTRAL SPECIES 6 ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b.i.b ENSGT00940000163509.a.b.i.a.b ENSGT00940000163509.a.b.i.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.b.a.c.a.b ENSGT01100000263483.E.a.c.b.a.c.a.a ENSGT01100000263483.E.a.c.b.a.c.b.a ENSGT01100000263483.E.a.c.b.a.c.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00390000006721 ENSGT00950000182953.C.d ENSGT00940000157692 ENSGT00940000165810 ENSGT00940000164917.d ENSGT00390000009786 ENSGT00940000157213 ENSGT00940000164655 ENSGT00940000155506.f ENSGT00940000157138.b ENSGT01050000244864.A.a.b.a.b.d Haplochromini_B ANCESTRAL SPECIES 95 ENSGT00940000163509.a.b.i.a.a.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00940000163509.a.b.i.a.a.b ENSGT00950000182994.A.c #21 ENSGT01100000263483.E.a.c.b.a.c.a.b ENSGT01100000263483.E.a.c.b.a.c.a.a ENSGT01100000263483.E.a.c.b.a.c.b.a ENSGT01100000263483.E.a.c.b.a.c.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000156647.b ENSGT00940000157424 ENSGT00940000175762 ENSGT00390000006721.q ENSGT01050000244864.A.a.b.a.b.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 Zebra mbuna MODERN SPECIES 1092 ADRA1B (ENSMZEG00005025077) ENSMZEG00005025057 ENSMZEG00005025055 ENSMZEG00005024987 ENSMZEG00005024984 APBB3 (ENSMZEG00005024981) ENSMZEG00005024979 camk2a (ENSMZEG00005024975) rps14 (ENSMZEG00005024973) ENSMZEG00005024970 chm (ENSMZEG00005024966) #21 ENSMZEG00005024964 ENSMZEG00005024963 ENSMZEG00005024961 ENSMZEG00005024959 ENSMZEG00005024957 #22 ENSMZEG00005024956 ndufa2 (ENSMZEG00005024955) ENSMZEG00005024954 ENSMZEG00005024953 ENSMZEG00005024952 ENSMZEG00005024951 ENSMZEG00005024950 ENSMZEG00005024949 ENSMZEG00005024948 ENSMZEG00005024947 ENSMZEG00005024946 ENSMZEG00005024945 ttc1 (ENSMZEG00005024944) pfdn1 (ENSMZEG00005024943) zgc:110540 (ENSMZEG00005024942) P. nyererei MODERN SPECIES 561 ENSPNYG00000022402 ENSPNYG00000022398 ENSPNYG00000022389 ENSPNYG00000022382 ENSPNYG00000022352 ENSPNYG00000022322 APBB3 (ENSPNYG00000022231) ENSPNYG00000022136 ENSPNYG00000022125 ENSPNYG00000022115 rps14 (ENSPNYG00000022110) chm (ENSPNYG00000022058) #21 ENSPNYG00000022041 ENSPNYG00000022032 ENSPNYG00000022021 ENSPNYG00000022008 #22 ENSPNYG00000021998 ndufa2 (ENSPNYG00000021988) ENSPNYG00000021905 Lyretail cichlid MODERN SPECIES 538 ENSNBRG00000024260 ENSNBRG00000024259 #22 ik (ENSNBRG00000024245) ndufa2 (ENSNBRG00000024208) ENSNBRG00000024180 ENSNBRG00000024167 mat2b (ENSNBRG00000024106) slc23a1 (ENSNBRG00000023971) PWWP2A (ENSNBRG00000023921) ENSNBRG00000023892 ENSNBRG00000023727 zgc:110540 (ENSNBRG00000023640) pfdn1 (ENSNBRG00000023592) ttc1 (ENSNBRG00000023534) ENSNBRG00000023436 ENSNBRG00000023315 ENSNBRG00000023208 Midas cichlid MODERN SPECIES 1018 ENSACIG00000022377 ENSACIG00000022370 ENSACIG00000022366 ENSACIG00000022362 DACH2 (ENSACIG00000022351) #22 ENSACIG00000022334 ndufa2 (ENSACIG00000022289) ADAMTS2 (ENSACIG00000022197) Pomacentridae ANCESTRAL SPECIES 150 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Pomacentridae_A ANCESTRAL SPECIES 158 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Amphiprion ANCESTRAL SPECIES 173 ENSGT00940000156944.a.a ENSGT00940000170476 ENSGT00940000157342.c.b ENSGT00940000159087 ENSGT00940000164327.a ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Clown anemonefish MODERN SPECIES 1516 chm (ENSAOCG00000016518) #21 ENSAOCG00000016424 ENSAOCG00000016385 #22 ik (ENSAOCG00000016333) ndufa2 (ENSAOCG00000001111) ENSAOCG00000016164 ENSAOCG00000015984 ENSAOCG00000015929 ENSAOCG00000015909 ENSAOCG00000015874 ENSAOCG00000015797 ENSAOCG00000015751 ttc1 (ENSAOCG00000015612) Orange clownfish MODERN SPECIES 6 ENSAPEG00000004722 ENSAPEG00000004715 ENSAPEG00000004682 ADRA1B (ENSAPEG00000004663) ENSAPEG00000004657 ENSAPEG00000004645 gria1b (ENSAPEG00000004572) nipal4 (ENSAPEG00000004531) ins (ENSAPEG00000004286) APBB3 (ENSAPEG00000004246) ENSAPEG00000004211 camk2a (ENSAPEG00000004147) rps14 (ENSAPEG00000004116) chm (ENSAPEG00000003921) #21 ENSAPEG00000003884 ENSAPEG00000003798 #22 ik (ENSAPEG00000003732) ndufa2 (ENSAPEG00000003711) ENSAPEG00000003692 ENSAPEG00000003513 ENSAPEG00000003481 ENSAPEG00000003360 ENSAPEG00000003290 ENSAPEG00000003262 ENSAPEG00000003081 ttc1 (ENSAPEG00000003068) pfdn1 (ENSAPEG00000003023) zgc:110540 (ENSAPEG00000003011) ENSAPEG00000002843 ENSAPEG00000002832 PWWP2A (ENSAPEG00000002823) Bicolor damselfish MODERN SPECIES 1941 ENSSPAG00000011283 APBB3 (ENSSPAG00000011197) ENSSPAG00000011180 ENSSPAG00000011174 ENSSPAG00000011164 CAMK2A (ENSSPAG00000011150) rps14 (ENSSPAG00000011124) chm (ENSSPAG00000011007) #21 ENSSPAG00000010992 #22 ENSSPAG00000010988 #22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00390000001134.b.`b.a #22 Salmoninae ANCESTRAL SPECIES ENSGT00390000001134.b.`b.a #22 Huchen MODERN SPECIES 1091 ENSHHUG00000030183 #22 mzt1 (ENSHHUG00000030178) bora (ENSHHUG00000030171) DIS3 (ENSHHUG00000030063) tgfbrap1 (ENSHHUG00000030032) cul4a (ENSHHUG00000030003) LAMP1 (ENSHHUG00000029995) grtp1a (ENSHHUG00000029993) adprhl1 (ENSHHUG00000029984) dcun1d2b (ENSHHUG00000029982) TMCO3 (ENSHHUG00000029977) tfdp1b (ENSHHUG00000029961) ATP4B (ENSHHUG00000029957) grk1a (ENSHHUG00000029878) gas6 (ENSHHUG00000029872) lims1 (ENSHHUG00000029855) Osteoglossocephalai ANCESTRAL SPECIES 302 ENSGT00940000165810 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00600000084617 ENSGT00940000157482.e ENSGT00940000166658.a ENSGT00940000157904 ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b Clupeocephala ANCESTRAL SPECIES 469 ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT00940000166658.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A Euteleosteomorpha ANCESTRAL SPECIES 201 ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT00940000166658.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.m.a ENSGT01060000248840 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00390000015415 ENSGT00950000182924.A.a ENSGT00940000165127.b ENSGT00940000165739 ENSGT00390000005498 ENSGT00390000013762.a.f ENSGT00510000048151.a ENSGT00940000154790.a.b ENSGT00940000160125 Acanthomorphata ANCESTRAL SPECIES 284 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.m.a ENSGT00390000011679 ENSGT00510000047351.b ENSGT00940000165274.a ENSGT00940000155927 ENSGT00940000155973.b.c Cod MODERN SPECIES 8 CORIN (ENSGMOG00000034334) ENSGMOG00000005221 mus81 (ENSGMOG00000008636) ovol1a (ENSGMOG00000025433) ENSGMOG00000008661 tkfc (ENSGMOG00000008672) ENSGMOG00000000519 ENSGMOG00000016236 ENSGMOG00000029736 ENSGMOG00000029066 ENSGMOG00000035016 ENSGMOG00000002376 ENSGMOG00000010348 ENSGMOG00000033281 ENSGMOG00000013364 ENSGMOG00000026870 #22 ENSGMOG00000022922 cnpy3 (ENSGMOG00000024117) trpc5a (ENSGMOG00000023952) ENSGMOG00000006270 ENSGMOG00000006281 LRAT (ENSGMOG00000006310) lratb.2 (ENSGMOG00000006348) rbm46 (ENSGMOG00000006357) npy2rl (ENSGMOG00000028583) btr12 (ENSGMOG00000034686) ENSGMOG00000018218 ENSGMOG00000003297 casq1b (ENSGMOG00000015913) ENSGMOG00000012652 ENSGMOG00000024281 Euacanthomorphacea ANCESTRAL SPECIES 41 ENSGT00940000164076.a.a ENSGT00940000157094 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723 ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.m.a ENSGT00390000011679 ENSGT00510000047351.b ENSGT00940000165274.a ENSGT00940000155927 ENSGT00940000155973.b.c ENSGT00940000154411 ENSGT01030000234576.D.a.b.a.a.b.f ENSGT00940000157467 ENSGT00940000158122 ENSGT00940000156323.c.b ENSGT00390000013075.b ENSGT00940000155905.b ENSGT00940000160928.n.b.c Pinecone sodierfish MODERN SPECIES 9 ovol1a (ENSMMDG00005015454) ENSMMDG00005015458 tkfc (ENSMMDG00005015477) exoc6b (ENSMMDG00005015546) cyp26b1 (ENSMMDG00005015895) ENSMMDG00005015897 dysf (ENSMMDG00005015909) ENSMMDG00005015923 ENSMMDG00005015926 ENSMMDG00005015929 pip4p1b (ENSMMDG00005015934) zgc:77880 (ENSMMDG00005015936) ENSMMDG00005015942 ENSMMDG00005015952 ENSMMDG00005015956 ENSMMDG00005015957 #22 cnpy3 (ENSMMDG00005015959) trpc5a (ENSMMDG00005015963) ENSMMDG00005015966 ENSMMDG00005015968 ENSMMDG00005015972 ENSMMDG00005015974 ENSMMDG00005015977 LRAT (ENSMMDG00005015982) lratb.2 (ENSMMDG00005015985) rbm46 (ENSMMDG00005015989) npy2rl (ENSMMDG00005015990) ENSMMDG00005015992 ENSMMDG00005015993 fga (ENSMMDG00005015994) fgb (ENSMMDG00005015998) Percomorphaceae ANCESTRAL SPECIES 18 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723 ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g Tiger tail seahorse MODERN SPECIES 93 m1ap (ENSHCOG00000001511) dok1b (ENSHCOG00000001503) nagk (ENSHCOG00000001499) PAIP2B (ENSHCOG00000001492) hspa12b (ENSHCOG00000001483) cct7 (ENSHCOG00000001467) ENSHCOG00000001455 DDIT4L (ENSHCOG00000001451) ENSHCOG00000001442 ENSHCOG00000000051 ENSHCOG00000001429 rcor2 (ENSHCOG00000001411) plaa (ENSHCOG00000001388) ENSHCOG00000001382 DENND4C (ENSHCOG00000001357) dachb (ENSHCOG00000001327) #22 cnpy3 (ENSHCOG00000001319) trpc5a (ENSHCOG00000001309) ENSHCOG00000001301 ENSHCOG00000001295 ARSJ (ENSHCOG00000001264) ENSHCOG00000001260 Percomorphaceae_B ANCESTRAL SPECIES 19 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000180552 ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000159922.a.b ENSGT00940000178415 Ovalentaria ANCESTRAL SPECIES 20 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b ENSGT00390000015089 Atherinomorphae ANCESTRAL SPECIES 22 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01090000260585 ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b ENSGT01040000240648 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000159922.a.b ENSGT00390000015089 ENSGT00390000013722 Oryzias ANCESTRAL SPECIES 21 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01090000260585.b ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b.f ENSGT01040000240648.c ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000156038.a.b.b.i.a.b.b.a ENSGT00940000156038.a.b.b.i.a.b.b.b ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a.s ENSGT01100000263529.a.a.a.a.b.c.a.t ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00940000174503 ENSGT00390000011932 ENSGT00940000163277 Oryzias_b ANCESTRAL SPECIES 18 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01090000260585.b ENSGT00390000003680.a.a.b.f ENSGT01040000240648.c ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156038.a.b.b.i.a.b.b.a.d ENSGT00940000156801.g ENSGT00940000156038.a.b.b.i.a.b.b.a.c ENSGT00940000156038.a.b.b.i.a.b.b.b.a ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT01090000260059.a.b.b.b.b.f.a.a.c.b ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a.s ENSGT01100000263529.a.a.a.a.b.c.a.t ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00940000174503 Indian medaka MODERN SPECIES 19 cmasa (ENSOMEG00000003339) ENSOMEG00000001032 ENSOMEG00000003297 tkfc (ENSOMEG00000003272) exoc6b (ENSOMEG00000003234) ENSOMEG00000003188 cyp26b1 (ENSOMEG00000003170) dysf (ENSOMEG00000002947) ENSOMEG00000002065 pip4p1b (ENSOMEG00000002021) ENSOMEG00000002013 zgc:77880 (ENSOMEG00000002004) ENSOMEG00000001996 ENSOMEG00000001977 ENSOMEG00000001970 dachb (ENSOMEG00000001968) #22 cnpy3 (ENSOMEG00000001956) trpc5a (ENSOMEG00000001934) ENSOMEG00000001899 ENSOMEG00000001841 ENSOMEG00000001774 ENSOMEG00000001673 ENSOMEG00000001635 ENSOMEG00000001591 ENSOMEG00000001579 ENSOMEG00000001531 ENSOMEG00000001502 ENSOMEG00000001450 ENSOMEG00000001375 ENSOMEG00000000006 ENSOMEG00000001367 Javanese ricefish MODERN SPECIES 9 ENSOJAG00000009018 PTGDR2 (ENSOJAG00000009052) ENSOJAG00000009104 cmasa (ENSOJAG00000009123) ENSOJAG00000009138 ENSOJAG00000009160 tkfc (ENSOJAG00000009274) exoc6b (ENSOJAG00000009549) cyp26b1 (ENSOJAG00000010533) pip4p1b (ENSOJAG00000010945) ENSOJAG00000010955 ENSOJAG00000010969 zgc:77880 (ENSOJAG00000010978) ENSOJAG00000010999 ENSOJAG00000011188 dachb (ENSOJAG00000011244) #22 cnpy3 (ENSOJAG00000011253) trpc5a (ENSOJAG00000011288) ENSOJAG00000011917 ENSOJAG00000012183 ENSOJAG00000012220 ENSOJAG00000012237 ENSOJAG00000012265 ENSOJAG00000012278 ENSOJAG00000012285 ENSOJAG00000012294 ENSOJAG00000012316 ENSOJAG00000012341 ENSOJAG00000012371 ENSOJAG00000012375 ENSOJAG00000012383 Oryzias_a ANCESTRAL SPECIES 132 ENSGT00940000156187 ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b.f ENSGT01040000240648.c ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A Chinese medaka MODERN SPECIES 545 dachb (ENSOSIG00000010825) #22 cnpy3 (ENSOSIG00000010817) Japanese Medaka HdrR MODERN SPECIES 9 ENSORLG00000025599 ENSORLG00000023405 dysf (ENSORLG00000003427) ENSORLG00000029679 ENSORLG00000028247 ENSORLG00000022634 ENSORLG00000026093 pip4p1b (ENSORLG00000029736) ENSORLG00000024820 ENSORLG00000023058 zgc:77880 (ENSORLG00000003337) ENSORLG00000003325 ENSORLG00000003263 ENSORLG00000022868 ENSORLG00000023404 dachb (ENSORLG00000021850) #22 cnpy3 (ENSORLG00000028413) ENSORLG00000025323 ENSORLG00000029703 atp6v0a2b (ENSORLG00000006769) ENSORLG00000025945 ENSORLG00000028584 pik3ip1 (ENSORLG00000006788) limk2 (ENSORLG00000006835) trpc5a (ENSORLG00000003233) ENSORLG00000029877 ENSORLG00000003201 ENSORLG00000026642 ENSORLG00000030106 ENSORLG00000025852 ENSORLG00000025131 Cyprinodontiformes ANCESTRAL SPECIES 22 ENSGT00940000177217 ENSGT00390000004237.n ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01090000260585 ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b ENSGT01040000240648 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000159922.a.b ENSGT00390000015089 ENSGT00390000013722 Aplocheiloidei ANCESTRAL SPECIES 71 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00390000003680.a.a.b ENSGT01040000240648 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b ENSGT00390000015089 ENSGT00390000013722 Mangrove rivulus MODERN SPECIES 325 zgc:77880 (ENSKMAG00000011146) stk26 (ENSKMAG00000011174) ENSKMAG00000011234 dachb (ENSKMAG00000011288) #22 cnpy3 (ENSKMAG00000011352) trpc5a (ENSKMAG00000011384) ENSKMAG00000011417 Turquoise killifish MODERN SPECIES 1613 cyp26b1 (ENSNFUG00015000954) ENSNFUG00015000952 ENSNFUG00015000215 ENSNFUG00015000188 PIH1D1 (ENSNFUG00015000163) Nfu_g_1_009550 (ENSNFUG00015000152) ENSNFUG00015000146 ENSNFUG00015000136 ENSNFUG00015000128 pip4p1b (ENSNFUG00015000119) ENSNFUG00015000106 zgc:77880 (ENSNFUG00015000097) MST4 (ENSNFUG00015000081) FRMD7 (ENSNFUG00015002210) ENSNFUG00015002206 dachb (ENSNFUG00015002202) #22 TNRC5 (ENSNFUG00015002196) ENSNFUG00015002190 ENSNFUG00015002180 ENSNFUG00015002172 ENSNFUG00015002165 ENSNFUG00015002162 ENSNFUG00015002154 ENSNFUG00015002151 trpc5a (ENSNFUG00015001952) ENSNFUG00015001833 ENSNFUG00015001825 ENSNFUG00015001718 ENSNFUG00015001700 ENSNFUG00015001696 FAM160A1 (ENSNFUG00015001691) Cyprinodontoidei ANCESTRAL SPECIES 21 ENSGT00390000004237.n ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01090000260585 ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b ENSGT01040000240648.a ENSGT01040000240648.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a.x.a ENSGT01100000263529.a.a.a.a.b.c.a.x.b ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000159922.a.b ENSGT00390000015089 Poeciliinae ANCESTRAL SPECIES 21 ENSGT00390000004237.n ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01090000260585 ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b ENSGT01040000240648.a ENSGT01040000240648.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000156038.a.a.c ENSGT00940000156038.a.b.b.i.a.b.b.c.a ENSGT00940000156038.a.b.b.i.a.b.b.c.b Platyfish MODERN SPECIES 5 ENSXMAG00000026463 ENSXMAG00000000501 ENSXMAG00000029595 tkfc (ENSXMAG00000000517) exoc6b (ENSXMAG00000000535) cyp26b1 (ENSXMAG00000000554) dysf (ENSXMAG00000000570) pip4p1b (ENSXMAG00000000626) ENSXMAG00000027788 ENSXMAG00000006085 ENSXMAG00000025587 zgc:77880 (ENSXMAG00000011043) stk26 (ENSXMAG00000011031) ENSXMAG00000026897 FRMD7 (ENSXMAG00000011030) dachb (ENSXMAG00000021052) #22 cnpy3 (ENSXMAG00000011013) trpc5a (ENSXMAG00000010977) ENSXMAG00000010964 ENSXMAG00000010935 ENSXMAG00000010934 ENSXMAG00000028315 ENSXMAG00000027906 ENSXMAG00000024693 ENSXMAG00000022807 ENSXMAG00000027982 ENSXMAG00000029567 ENSXMAG00000025109 ENSXMAG00000023843 ENSXMAG00000024961 ENSXMAG00000026137 Poecilia ANCESTRAL SPECIES 52 ENSGT00390000004237.m.a ENSGT00390000004237.n ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.a.a.b ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b ENSGT01040000240648.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000156038.a.a.c ENSGT00940000156038.a.b.b.i.a.b.b.c.a ENSGT00940000156038.a.b.b.i.a.b.b.c.b NAME_6 ANCESTRAL SPECIES 317 ENSGT00940000156187 ENSGT01090000260585 ENSGT00990000203723.a.b ENSGT00390000003680.a.a.b ENSGT01040000240648.a ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000156038.a.b.b.i.a.b.b.c.a ENSGT00940000156038.a.b.b.i.a.b.b.c.b Sailfin molly MODERN SPECIES 719 zgc:77880 (ENSPLAG00000001526) ENSPLAG00000001534 FRMD7 (ENSPLAG00000001539) dachb (ENSPLAG00000001543) #22 cnpy3 (ENSPLAG00000001552) trpc5a (ENSPLAG00000001565) Amazon molly MODERN SPECIES 468 dysf (ENSPFOG00000002165) ENSPFOG00000022183 ENSPFOG00000022117 ENSPFOG00000022145 pip4p1b (ENSPFOG00000001920) ENSPFOG00000023821 ENSPFOG00000023606 ENSPFOG00000022781 ENSPFOG00000024071 ENSPFOG00000022884 zgc:77880 (ENSPFOG00000001838) stk26 (ENSPFOG00000001725) ENSPFOG00000001633 dachb (ENSPFOG00000001498) #22 cnpy3 (ENSPFOG00000001382) trpc5a (ENSPFOG00000001087) ENSPFOG00000023351 ENSPFOG00000022508 ENSPFOG00000023333 ENSPFOG00000023880 ENSPFOG00000024751 ENSPFOG00000000908 ENSPFOG00000000822 ENSPFOG00000000766 ENSPFOG00000023164 ENSPFOG00000021894 ENSPFOG00000000654 ENSPFOG00000000596 Guppy MODERN SPECIES 450 tmem198b (ENSPREG00000013409) ENSPREG00000013393 dph3 (ENSPREG00000013380) POMC (ENSPREG00000013365) gbx2 (ENSPREG00000013353) AGAP1 (ENSPREG00000013249) faimb (ENSPREG00000013204) ENSPREG00000013186 INHBB (ENSPREG00000013172) GLI2 (ENSPREG00000013102) CLASP1 (ENSPREG00000012726) clcn4 (ENSPREG00000012636) zgc:77880 (ENSPREG00000012573) ENSPREG00000012553 stk26 (ENSPREG00000012519) ENSPREG00000012482 #22 cnpy3 (ENSPREG00000012469) trpc5a (ENSPREG00000012394) ENSPREG00000012366 ENSPREG00000012351 ENSPREG00000012337 ENSPREG00000012305 ENSPREG00000012285 ENSPREG00000012249 ENSPREG00000012132 ENSPREG00000011741 ENSPREG00000011653 ENSPREG00000011630 ENSPREG00000011439 ENSPREG00000011397 ENSPREG00000011374 NAME_4 ANCESTRAL SPECIES 379 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g Mummichog MODERN SPECIES 357 zgc:77880 (ENSFHEG00000008204) stk26 (ENSFHEG00000008217) FRMD7 (ENSFHEG00000000640) dachb (ENSFHEG00000008256) #22 cnpy3 (ENSFHEG00000008288) trpc5a (ENSFHEG00000008375) Sheepshead minnow MODERN SPECIES 363 zgc:77880 (ENSCVAG00000004850) ENSCVAG00000000780 FRMD7 (ENSCVAG00000004761) dachb (ENSCVAG00000004738) #22 cnpy3 (ENSCVAG00000004731) trpc5a (ENSCVAG00000004711) ENSCVAG00000004666 ENSCVAG00000004651 ENSCVAG00000004634 Ovalentaria_B ANCESTRAL SPECIES 19 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00940000174503 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000156063.l Cichlidae ANCESTRAL SPECIES 57 ENSGT00390000003680.a.a.b ENSGT00990000203723.b.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000154737.d ENSGT00950000182907.a.b.a ENSGT00940000155598.b ENSGT01050000244866.D.a.d ENSGT01030000234592.A.a.b.i.a ENSGT00940000155951.b ENSGT00940000155951.a ENSGT00940000166707 ENSGT00940000166038 ENSGT00940000156633.d.b ENSGT00940000175002 ENSGT00940000163999.b.a.b.a Midas cichlid MODERN SPECIES 4 zgc:77880 (ENSACIG00000000140) stk26 (ENSACIG00000000139) ENSACIG00000000138 dachb (ENSACIG00000000137) #22 cnpy3 (ENSACIG00000000136) trpc5a (ENSACIG00000000135) Pseudocrenilabrinae ANCESTRAL SPECIES 45 ENSGT00990000203723.b.a.a ENSGT00990000203723.b.a.b ENSGT00390000003680.a.a.b ENSGT00990000203723.b.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000154737.d ENSGT00950000182907.a.b.a ENSGT00940000155598.b ENSGT01050000244866.D.a.d.d ENSGT01030000234592.A.a.b.i.a ENSGT00940000155951.b ENSGT00940000155951.a ENSGT00940000166707 ENSGT00940000166038 ENSGT00940000156633.d.b ENSGT00940000163999.b.a.b.a.a ENSGT00940000157587.l Nile tilapia MODERN SPECIES 15 ENSONIG00000041956 ENSONIG00000033503 ENSONIG00000034860 ENSONIG00000042002 ENSONIG00000036902 ENSONIG00000033894 pip4p1b (ENSONIG00000006276) ENSONIG00000032418 ENSONIG00000038132 ENSONIG00000042328 ENSONIG00000039772 ENSONIG00000031333 zgc:77880 (ENSONIG00000006279) stk26 (ENSONIG00000006281) FRMD7 (ENSONIG00000006287) dachb (ENSONIG00000006288) #22 cnpy3 (ENSONIG00000006296) trpc5a (ENSONIG00000006300) ENSONIG00000006317 ENSONIG00000006320 ENSONIG00000017890 ENSONIG00000019247 ENSONIG00000036097 ENSONIG00000027989 ENSONIG00000036604 KIF1C (ENSONIG00000016882) ENSONIG00000033802 ENSONIG00000034799 ENSONIG00000016886 ENSONIG00000032144 ENSONIG00000033597 Pseudocrenilabrinae_A ANCESTRAL SPECIES 69 ENSGT00390000003849 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00390000010554.j ENSGT00390000015415 ENSGT00950000182924.A.a ENSGT00990000203723.b.a.a ENSGT00990000203723.b.a.b ENSGT00390000003680.a.a.b ENSGT00990000203723.b.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g Lyretail cichlid MODERN SPECIES 392 ENSNBRG00000020521 dysf (ENSNBRG00000020538) cyp26b1 (ENSNBRG00000020646) exoc6b (ENSNBRG00000020656) ENSNBRG00000020716 tkfc (ENSNBRG00000020770) ENSNBRG00000020894 ENSNBRG00000020968 ENSNBRG00000020984 ENSNBRG00000020989 pip4p1b (ENSNBRG00000020997) ENSNBRG00000021037 zgc:77880 (ENSNBRG00000021059) ENSNBRG00000021085 FRMD7 (ENSNBRG00000021140) dachb (ENSNBRG00000021174) #22 cnpy3 (ENSNBRG00000021212) trpc5a (ENSNBRG00000021232) ENSNBRG00000021272 ENSNBRG00000021285 ENSNBRG00000021312 ENSNBRG00000021331 Haplochromini ANCESTRAL SPECIES 80 ENSGT00390000003849 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00390000010554.j ENSGT00390000015415 ENSGT00950000182924.A.a ENSGT00990000203723.b.a.a ENSGT00990000203723.b.a.b ENSGT00390000003680.a.a.b ENSGT00990000203723.b.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g Haplochromini_A ANCESTRAL SPECIES 84 ENSGT00390000003849 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00390000010554.j ENSGT00390000015415 ENSGT00950000182924.A.a ENSGT00990000203723.b.a.a ENSGT00990000203723.b.a.b ENSGT00390000003680.a.a.b ENSGT00990000203723.b.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT01050000244868.c.b.b.b.a ENSGT00940000156801.g Haplochromini_B ANCESTRAL SPECIES 97 ENSGT00390000005739.a.a ENSGT00390000010554.j ENSGT00390000015415 ENSGT00940000177217 ENSGT00940000165127.b ENSGT00950000183169.A.b.e.a.a.a.b.a.a.b ENSGT01070000254181.a.b ENSGT00990000203723.b.a.a ENSGT00990000203723.b.a.b ENSGT00390000003680.a.a.b ENSGT00990000203723.b.b ENSGT00940000166122 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT01050000244868.c.b.b.b.a.a ENSGT00940000156801.g ENSGT01100000263513.a.a.b.a.b.a.l.a.a ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.a.a.b Zebra mbuna MODERN SPECIES 1106 exoc6b (ENSMZEG00005019703) ENSMZEG00005019697 tkfc (ENSMZEG00005019693) ENSMZEG00005019687 ENSMZEG00005019682 ENSMZEG00005019671 ENSMZEG00005019654 ENSMZEG00005019631 pip4p1b (ENSMZEG00005019603) ENSMZEG00005019594 ENSMZEG00005019571 zgc:77880 (ENSMZEG00005019562) ENSMZEG00005019550 stk26 (ENSMZEG00005019545) ENSMZEG00005019542 dachb (ENSMZEG00005019531) #22 cnpy3 (ENSMZEG00005019521) trpc5a (ENSMZEG00005019515) ENSMZEG00005019506 ENSMZEG00005019503 ENSMZEG00005019498 ENSMZEG00005019495 ENSMZEG00005019483 pgap2 (ENSMZEG00005019213) ENSMZEG00005019210 ENSMZEG00005019208 ENSMZEG00005019206 ENSMZEG00005019193 grap2b (ENSMZEG00005019190) fam83fb (ENSMZEG00005019183) cyth4b (ENSMZEG00005019173) Eastern happy MODERN SPECIES 15 NHLRC2 (ENSACLG00000014325) dclre1a (ENSACLG00000014407) plekhs1.3 (ENSACLG00000014429) casp7 (ENSACLG00000014444) ENSACLG00000014472 dnmbp (ENSACLG00000014510) cpn1 (ENSACLG00000014625) ENSACLG00000014658 ENSACLG00000014666 ENSACLG00000014705 ENSACLG00000014746 zgc:77880 (ENSACLG00000014762) stk26 (ENSACLG00000014867) ENSACLG00000014911 ENSACLG00000014917 dachb (ENSACLG00000014941) #22 cnpy3 (ENSACLG00000014960) trpc5a (ENSACLG00000015012) ENSACLG00000015191 ENSACLG00000015352 ENSACLG00000015363 ENSACLG00000015384 rnf175 (ENSACLG00000015418) ENSACLG00000015491 ENSACLG00000015579 ENSACLG00000015604 ENSACLG00000015636 ENSACLG00000015667 tlr2 (ENSACLG00000015691) ENSACLG00000015732 ENSACLG00000015840 P. nyererei MODERN SPECIES 526 zgc:77880 (ENSPNYG00000000686) stk26 (ENSPNYG00000000649) FRMD7 (ENSPNYG00000000623) dachb (ENSPNYG00000000576) #22 cnpy3 (ENSPNYG00000000558) trpc5a (ENSPNYG00000000531) ENSPNYG00000000524 ENSPNYG00000000497 ENSPNYG00000000467 Burton s mouthbrooder DUPLICATION Burton s mouthbrooder MODERN SPECIES 746 dachb (ENSHBUG00000000944) #22 cnpy3 (ENSHBUG00000000552) trpc5a (ENSHBUG00000018574) Burton s mouthbrooder MODERN SPECIES 1077 zgc:77880 (ENSHBUG00000016185) stk26 (ENSHBUG00000016174) ENSHBUG00000016096 ENSHBUG00000016088 #22 Pomacentridae ANCESTRAL SPECIES 105 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.m.a Bicolor damselfish MODERN SPECIES 862 zgc:77880 (ENSSPAG00000022012) stk26 (ENSSPAG00000022029) FRMD7 (ENSSPAG00000022057) dachb (ENSSPAG00000022080) #22 ENSSPAG00000022094 cnpy3 (ENSSPAG00000022100) trpc5a (ENSSPAG00000022108) Pomacentridae_A ANCESTRAL SPECIES 22 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 Spiny chromis DUPLICATION Spiny chromis MODERN SPECIES 780 vdrb (ENSAPOG00000012198) ENSAPOG00000012153 ENSAPOG00000012135 ENSAPOG00000012127 #22 ENSAPOG00000012090 ENSAPOG00000012082 ENSAPOG00000012066 ENSAPOG00000012048 Spiny chromis MODERN SPECIES 1607 zgc:77880 (ENSAPOG00000022692) stk26 (ENSAPOG00000022754) FRMD7 (ENSAPOG00000022788) ENSAPOG00000022798 #22 Amphiprion ANCESTRAL SPECIES 82 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT01090000260774 ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 Orange clownfish MODERN SPECIES 15 cmasa (ENSAPEG00000013348) ENSAPEG00000013314 tkfc (ENSAPEG00000013257) exoc6b (ENSAPEG00000013214) exoc6b (ENSAPEG00000013162) cyp26b1 (ENSAPEG00000013138) dysf (ENSAPEG00000012983) ENSAPEG00000012888 pip4p1b (ENSAPEG00000012855) ENSAPEG00000012845 ENSAPEG00000012835 zgc:77880 (ENSAPEG00000012801) stk26 (ENSAPEG00000012756) FRMD7 (ENSAPEG00000012725) ENSAPEG00000012689 ENSAPEG00000012652 #22 ENSAPEG00000012642 ENSAPEG00000012626 ENSAPEG00000012607 trpc5a (ENSAPEG00000012562) cnpy3 (ENSAPEG00000012530) cnpy3 (ENSAPEG00000012515) Clown anemonefish MODERN SPECIES 2412 FRMD7 (ENSAOCG00000006536) ENSAOCG00000006554 #22 Percomorphaceae_C ANCESTRAL SPECIES 20 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000180552 ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000156063.l Eupercaria ANCESTRAL SPECIES 19 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b ENSGT00390000015089 Eupecaria_A ANCESTRAL SPECIES 20 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT01030000234775 ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 1281 ENSLBEG00000022145 #22 Ballan wrasse MODERN SPECIES 1347 ENSLBEG00000028001 #22 Eupecaria_B ANCESTRAL SPECIES 20 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b.e ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT01030000234775 ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b Eupecaria_C ANCESTRAL SPECIES 47 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b.f ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000154737.d ENSGT00950000182907.a.b.a ENSGT00940000155598.b ENSGT01030000234592.A.a.b.j ENSGT01050000244866.D.a.d ENSGT01030000234592.A.a.b.i.a ENSGT00940000155951.b ENSGT00940000155951.a ENSGT00940000166707 ENSGT00940000166038 ENSGT00940000156633.d.b ENSGT00940000163999.b.a.b Gilthead seabream MODERN SPECIES 1 exoc6b (ENSSAUG00010010159) cyp26b1 (ENSSAUG00010010153) dysf (ENSSAUG00010002158) ENSSAUG00010001938 ENSSAUG00010001934 ENSSAUG00010001931 ENSSAUG00010001926 ENSSAUG00010001918 ENSSAUG00010001905 ENSSAUG00010001875 ENSSAUG00010001858 pip4p1b (ENSSAUG00010001850) zgc:77880 (ENSSAUG00010001844) stk26 (ENSSAUG00010001589) ENSSAUG00010001550 dachb (ENSSAUG00010001536) #22 ENSSAUG00010001496 cnpy3 (ENSSAUG00010001480) trpc5a (ENSSAUG00010001461) ENSSAUG00010001432 ENSSAUG00010001428 ENSSAUG00010001425 ENSSAUG00010001420 ENSSAUG00010001402 ENSSAUG00010001395 ENSSAUG00010001389 ENSSAUG00010001374 ENSSAUG00010001360 ENSSAUG00010001345 ENSSAUG00010001338 ENSSAUG00010001328 Eupercaria_incertae_sedis ANCESTRAL SPECIES 60 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b.e ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT01030000234775 ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00940000174503 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l Large yellow croaker MODERN SPECIES 485 zgc:101810 (ENSLCRG00005014185) six7 (ENSLCRG00005014183) b4gat1 (ENSLCRG00005014180) pfdn2 (ENSLCRG00005014176) nit1 (ENSLCRG00005014172) CLCN3 (ENSLCRG00005013766) ENSLCRG00005013755 cyp26b1 (ENSLCRG00005013753) dysf (ENSLCRG00005013209) ENSLCRG00005013200 ENSLCRG00005013199 pip4p1b (ENSLCRG00005013197) zgc:77880 (ENSLCRG00005013196) stk26 (ENSLCRG00005013174) ENSLCRG00005013167 dachb (ENSLCRG00005013165) #22 cnpy3 (ENSLCRG00005013164) trpc5a (ENSLCRG00005010892) ENSLCRG00005010872 ENSLCRG00005010871 ENSLCRG00005010870 CLCN5 (ENSLCRG00005010769) tnfsf10l (ENSLCRG00005010759) ccnb3 (ENSLCRG00005010754) ENSLCRG00005010748 ENSLCRG00005010747 htr2cl1 (ENSLCRG00005010745) zgc:109889 (ENSLCRG00005010742) ENSLCRG00005010741 ENSLCRG00005008762 zgc:92429 (ENSLCRG00005008732) European seabass DUPLICATION European seabass MODERN SPECIES 4 tkfc (ENSDLAG00005017530) exoc6b (ENSDLAG00005017054) ENSDLAG00005016968 dysf (ENSDLAG00005010041) ENSDLAG00005018193 ENSDLAG00005030710 ENSDLAG00005009893 ENSDLAG00005031645 ENSDLAG00005032803 ENSDLAG00005033648 ENSDLAG00005029432 ENSDLAG00005009858 ENSDLAG00005009792 ENSDLAG00005033257 ENSDLAG00005027953 #22 dachb (ENSDLAG00005030056) #22 cnpy3 (ENSDLAG00005031528) trpc5a (ENSDLAG00005008433) ENSDLAG00005008388 ENSDLAG00005031043 ENSDLAG00005008326 ENSDLAG00005032583 ENSDLAG00005033172 ENSDLAG00005031518 ENSDLAG00005034456 ENSDLAG00005007947 TMEM184C (ENSDLAG00005007906) ENSDLAG00005007896 TTC29 (ENSDLAG00005007891) ENSDLAG00005002938 ENSDLAG00005028938 European seabass MODERN SPECIES 4 ENSDLAG00005017808 tkfc (ENSDLAG00005017530) exoc6b (ENSDLAG00005017054) ENSDLAG00005016968 dysf (ENSDLAG00005010041) ENSDLAG00005018193 ENSDLAG00005030710 ENSDLAG00005009893 ENSDLAG00005031645 ENSDLAG00005032803 ENSDLAG00005033648 ENSDLAG00005029432 ENSDLAG00005009858 ENSDLAG00005009792 ENSDLAG00005033257 ENSDLAG00005027953 #22 dachb (ENSDLAG00005030056) #22 cnpy3 (ENSDLAG00005031528) trpc5a (ENSDLAG00005008433) ENSDLAG00005008388 ENSDLAG00005031043 ENSDLAG00005008326 ENSDLAG00005032583 ENSDLAG00005033172 ENSDLAG00005031518 ENSDLAG00005034456 ENSDLAG00005007947 TMEM184C (ENSDLAG00005007906) ENSDLAG00005007896 TTC29 (ENSDLAG00005007891) ENSDLAG00005002938 Perciformes ANCESTRAL SPECIES 19 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b.e ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT01050000244843.c.a.b.a.a.b.b ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000159922.a.b Cottioidei ANCESTRAL SPECIES 65 ENSGT00510000050937 ENSGT00950000183118.A.c.b.a ENSGT00940000157843 ENSGT00530000063624.B ENSGT00390000005569 ENSGT00950000182963.b.b ENSGT00940000153904.b ENSGT00940000153284.a.mc.a ENSGT00940000164592 ENSGT00940000165991 ENSGT00940000160883.b.d ENSGT01090000259997.a.e ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n Lumpfish MODERN SPECIES 9 leap2 (ENSCLMG00005009446) PHKA1 (ENSCLMG00005009462) hdac8 (ENSCLMG00005010034) cited1 (ENSCLMG00005010035) rps4x (ENSCLMG00005010036) NHSL2 (ENSCLMG00005010039) arhgap36 (ENSCLMG00005010041) ENSCLMG00005010042 rasl11a (ENSCLMG00005010807) gc2 (ENSCLMG00005010813) ENSCLMG00005010945 ENSCLMG00005010946 zgc:77880 (ENSCLMG00005010947) stk26 (ENSCLMG00005010949) ENSCLMG00005011465 dachb (ENSCLMG00005011466) #22 cnpy3 (ENSCLMG00005011468) trpc5a (ENSCLMG00005011470) ENSCLMG00005011482 ENSCLMG00005011484 ENSCLMG00005011485 ENSCLMG00005011486 ENSCLMG00005011487 ENSCLMG00005011488 ENSCLMG00005011489 ENSCLMG00005011490 ENSCLMG00005011492 ENSCLMG00005011493 ENSCLMG00005011496 KCNJ10 (ENSCLMG00005011499) pnp5a (ENSCLMG00005011501) Perciformes_a ANCESTRAL SPECIES 18 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b.e ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT01050000244843.c.a.b.a.a.b.b ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000159922.a.b ENSGT00390000015089 ENSGT00390000013722 Pike perch MODERN SPECIES 19 ovol1a (ENSSLUG00000000694) cmasa (ENSSLUG00000000701) ENSSLUG00000000708 tkfc (ENSSLUG00000000729) exoc6b (ENSSLUG00000000791) cyp26b1 (ENSSLUG00000000845) ENSSLUG00000000848 ENSSLUG00000000852 dysf (ENSSLUG00000000924) ENSSLUG00000001086 pip4p1b (ENSSLUG00000001111) ENSSLUG00000001117 zgc:77880 (ENSSLUG00000001124) ENSSLUG00000001176 FRMD7 (ENSSLUG00000001283) dachb (ENSSLUG00000001287) #22 ENSSLUG00000001288 ENSSLUG00000001290 cnpy3 (ENSSLUG00000001292) trpc5a (ENSSLUG00000001298) ENSSLUG00000001310 rasl11a (ENSSLUG00000001312) ENSSLUG00000001337 arhgap36 (ENSSLUG00000001419) ENSSLUG00000001421 rps4x (ENSSLUG00000001429) hdac8 (ENSSLUG00000001495) PHKA1 (ENSSLUG00000001944) leap2 (ENSSLUG00000002457) bmp15 (ENSSLUG00000002460) ENSSLUG00000002470 Channel bull blenny MODERN SPECIES 9 ENSCGOG00000020782 ENSCGOG00000020790 ENSCGOG00000020809 ENSCGOG00000020817 ENSCGOG00000020829 cmasa (ENSCGOG00000020833) ENSCGOG00000020836 ENSCGOG00000020839 tkfc (ENSCGOG00000020850) ENSCGOG00000020915 cyp26b1 (ENSCGOG00000020928) dysf (ENSCGOG00000020975) zgc:77880 (ENSCGOG00000011738) stk26 (ENSCGOG00000011746) ENSCGOG00000011936 ENSCGOG00000011939 #22 ENSCGOG00000011942 ENSCGOG00000011943 ENSCGOG00000011963 ENSCGOG00000011967 ENSCGOG00000011969 ENSCGOG00000011978 ENSCGOG00000011983 ENSCGOG00000011986 ENSCGOG00000011989 ENSCGOG00000011992 ENSCGOG00000011995 ENSCGOG00000012060 CORO2A (ENSCGOG00000012069) tec (ENSCGOG00000012229) ENSCGOG00000012528 Tetraodontidae ANCESTRAL SPECIES 35 ENSGT00940000157094 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b ENSGT00390000015089 ENSGT00390000013722 Fugu MODERN SPECIES 20 mus81 (ENSTRUG00000011600) ovol1a (ENSTRUG00000029012) cmasa (ENSTRUG00000023204) ENSTRUG00000020095 ENSTRUG00000032770 tkfc (ENSTRUG00000001702) exoc6b (ENSTRUG00000012277) cyp26b1 (ENSTRUG00000012613) ENSTRUG00000022157 ENSTRUG00000025453 pip4p1b (ENSTRUG00000027820) ENSTRUG00000029629 zgc:77880 (ENSTRUG00000027264) ENSTRUG00000006511 ENSTRUG00000006433 dachb (ENSTRUG00000027020) #22 cnpy3 (ENSTRUG00000025774) trpc5a (ENSTRUG00000013453) ENSTRUG00000028376 ENSTRUG00000017450 ENSTRUG00000017457 ENSTRUG00000017465 ENSTRUG00000017467 TMEM184C (ENSTRUG00000017477) ednrab (ENSTRUG00000017482) slc10a7 (ENSTRUG00000017490) REELD1 (ENSTRUG00000022355) ENSTRUG00000028270 ENSTRUG00000017497 abce1 (ENSTRUG00000017503) anapc10 (ENSTRUG00000017519) Tetraodon MODERN SPECIES 26 ankrd46b (ENSTNIG00000005502) tmem185 (ENSTNIG00000005501) mus81 (ENSTNIG00000005500) ovol1a (ENSTNIG00000005499) ENSTNIG00000005498 ENSTNIG00000005497 tkfc (ENSTNIG00000005496) exoc6b (ENSTNIG00000005495) cyp26b1 (ENSTNIG00000011235) dysf (ENSTNIG00000011236) pip4p1b (ENSTNIG00000011237) ENSTNIG00000011238 zgc:77880 (ENSTNIG00000011239) stk26 (ENSTNIG00000011240) FRMD7 (ENSTNIG00000011241) ENSTNIG00000011242 #22 cnpy3 (ENSTNIG00000011243) trpc5a (ENSTNIG00000011244) ENSTNIG00000011245 ENSTNIG00000011246 ENSTNIG00000011247 ENSTNIG00000011248 ENSTNIG00000011249 TMEM184C (ENSTNIG00000011250) ednrab (ENSTNIG00000011251) slc10a7 (ENSTNIG00000011252) ENSTNIG00000003530 ENSTNIG00000003531 bace2 (ENSTNIG00000003532) DSCAM (ENSTNIG00000004972) ENSTNIG00000004971 Percomorphaceae_D ANCESTRAL SPECIES 20 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01100000263582 ENSGT00940000162818.c.a.g.b ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000180552 ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000156063.l Anabantaria ANCESTRAL SPECIES 19 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01100000263582 ENSGT00940000162818.c.a.g.b ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000165651.b ENSGT00900000141164.r.b ENSGT00940000160303.a.a ENSGT00940000156646.c ENSGT00940000160125 ENSGT00940000154790.a.b ENSGT00510000048151.a ENSGT00940000166331 ENSGT00950000182985.b.b.sc ENSGT00940000160539 ENSGT00940000164137.a ENSGT00940000167292.a ENSGT00940000164916 Anabantoidei ANCESTRAL SPECIES 22 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT01100000263582 ENSGT00940000162818.c.a.g.b ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000165651.b ENSGT00900000141164.r.b ENSGT00940000160303.a.a ENSGT00940000156646.c ENSGT00940000160125 ENSGT00940000154790.a.b ENSGT00510000048151.a ENSGT00940000166331 ENSGT00950000182985.b.b.sc ENSGT00940000160539 ENSGT00940000164137.a ENSGT00940000167292.a ENSGT00940000164916 Climbing perch MODERN SPECIES 9 ENSATEG00000015090 ENSATEG00000015109 tkfc (ENSATEG00000015172) exoc6b (ENSATEG00000015197) ENSATEG00000015284 dysf (ENSATEG00000015294) ENSATEG00000015414 ENSATEG00000015440 ENSATEG00000015464 ENSATEG00000015485 ENSATEG00000015515 ENSATEG00000029189 ENSATEG00000015626 ENSATEG00000015664 ENSATEG00000015711 dachb (ENSATEG00000015743) #22 cnpy3 (ENSATEG00000015761) trpc5a (ENSATEG00000015769) ENSATEG00000015815 ENSATEG00000015899 ENSATEG00000015918 ENSATEG00000015953 snx15 (ENSATEG00000015964) ENSATEG00000015978 tmem179ba (ENSATEG00000015993) brms1 (ENSATEG00000016026) ppp1r14bb (ENSATEG00000016041) plcb3 (ENSATEG00000016052) slc8a4b (ENSATEG00000016105) badb (ENSATEG00000016189) zgc:101765 (ENSATEG00000027016) Siamese fighting fish MODERN SPECIES 10 ENSBSLG00000023638 ENSBSLG00000023664 ENSBSLG00000023675 ENSBSLG00000023707 ENSBSLG00000023718 ENSBSLG00000023740 ENSBSLG00000023741 ENSBSLG00000023745 ENSBSLG00000023748 ENSBSLG00000023749 ENSBSLG00000023751 zgc:77880 (ENSBSLG00000023759) stk26 (ENSBSLG00000004964) ENSBSLG00000005063 CTIF (ENSBSLG00000005125) dachb (ENSBSLG00000005180) #22 cnpy3 (ENSBSLG00000005292) trpc5a (ENSBSLG00000005540) pip4p1b (ENSBSLG00000006122) ENSBSLG00000006124 dysf (ENSBSLG00000007109) cyp26b1 (ENSBSLG00000012043) exoc6b (ENSBSLG00000012154) tkfc (ENSBSLG00000012678) ENSBSLG00000012902 ENSBSLG00000012909 cmasa (ENSBSLG00000012918) ovol1a (ENSBSLG00000012923) mus81 (ENSBSLG00000012931) tmem185 (ENSBSLG00000012937) ENSBSLG00000013179 Zig-zag eel MODERN SPECIES 9 ENSMAMG00000009723 ENSMAMG00000009698 ENSMAMG00000009636 tkfc (ENSMAMG00000009682) exoc6b (ENSMAMG00000009540) ENSMAMG00000009498 ENSMAMG00000028328 dysf (ENSMAMG00000009364) ENSMAMG00000009352 ENSMAMG00000027005 ENSMAMG00000009326 ENSMAMG00000024542 ENSMAMG00000009260 ENSMAMG00000009249 ENSMAMG00000009225 dachb (ENSMAMG00000009201) #22 cnpy3 (ENSMAMG00000009186) trpc5a (ENSMAMG00000009148) ENSMAMG00000009092 ENSMAMG00000009013 ENSMAMG00000008982 ENSMAMG00000008965 snx15 (ENSMAMG00000008962) ENSMAMG00000008948 tmem179ba (ENSMAMG00000027109) brms1 (ENSMAMG00000008874) ppp1r14bb (ENSMAMG00000008860) plcb3 (ENSMAMG00000008785) slc8a4b (ENSMAMG00000008734) badb (ENSMAMG00000008728) zgc:101765 (ENSMAMG00000008718) Carangaria ANCESTRAL SPECIES 20 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT01070000253890 ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000156063.l ENSGT00940000159922.a.b Carangaria_A ANCESTRAL SPECIES 60 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT01070000253890 ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT01090000259997.a.d.b.b.b.b.b ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000178504 ENSGT00940000156063.l Barramundi perch MODERN SPECIES 321 zgc:77880 (ENSLCAG00010019753) stk26 (ENSLCAG00010019757) ENSLCAG00010019763 ENSLCAG00010019770 #22 cnpy3 (ENSLCAG00010019771) trpc5a (ENSLCAG00010019787) ENSLCAG00010019847 dysf (ENSLCAG00010019901) cyp26b1 (ENSLCAG00010020139) Seriola ANCESTRAL SPECIES 24 ENSGT00940000165739 ENSGT01090000259997.a.d.b.b.a ENSGT00390000004237 ENSGT00940000165127.b ENSGT01070000253890 ENSGT00950000182924.A.a ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT01090000259997.a.d.b.b.b.b.b ENSGT00940000154895.a.a ENSGT01100000263529.a.a.a.a.b.c.a.g ENSGT01100000263529.a.a.a.a.b.c.a.h ENSGT01050000244843.c.a.b.a.a.b.a.a.s ENSGT00940000154737.d ENSGT00950000182907.a.b.a ENSGT00940000155598.b ENSGT00940000155951.b ENSGT00940000155951.a Greater amberjack MODERN SPECIES 124 cmasa (ENSSDUG00000009875) ENSSDUG00000009915 ENSSDUG00000009937 ENSSDUG00000009944 ENSSDUG00000009958 tkfc (ENSSDUG00000009991) exoc6b (ENSSDUG00000010037) cyp26b1 (ENSSDUG00000010139) dysf (ENSSDUG00000010186) ENSSDUG00000010296 pip4p1b (ENSSDUG00000010391) zgc:77880 (ENSSDUG00000010423) stk26 (ENSSDUG00000010465) ENSSDUG00000010515 ENSSDUG00000010524 dachb (ENSSDUG00000010555) #22 cnpy3 (ENSSDUG00000010598) trpc5a (ENSSDUG00000010612) ENSSDUG00000010648 ENSSDUG00000010674 ENSSDUG00000010704 ENSSDUG00000010721 DCLK2 (ENSSDUG00000010741) ENSSDUG00000010827 ENSSDUG00000010868 ENSSDUG00000010878 ENSSDUG00000010891 ENSSDUG00000010928 CORO2A (ENSSDUG00000010949) tec (ENSSDUG00000010983) ENSSDUG00000011050 Yellowtail amberjack MODERN SPECIES 2844 cyp26b1 (ENSSLDG00000003299) dysf (ENSSLDG00000003369) ENSSLDG00000003576 pip4p1b (ENSSLDG00000003600) zgc:77880 (ENSSLDG00000003658) stk26 (ENSSLDG00000003724) ENSSLDG00000003918 ENSSLDG00000003949 ENSSLDG00000003990 #22 Pleuronectoidei ANCESTRAL SPECIES 58 ENSGT00940000158388 ENSGT00390000005498 ENSGT00940000165739 ENSGT00390000004237 ENSGT00940000165127.b ENSGT00940000177217 ENSGT00390000015415 ENSGT00390000005739.a.a ENSGT00800000124060.A.a ENSGT00940000156187 ENSGT00990000203723.b ENSGT00390000003680.a.a.b ENSGT00940000164842 ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT01060000248594.e.a.n ENSGT00940000156801.g ENSGT01030000234775 ENSGT00950000182936.a.a.b.b ENSGT00940000155694.h ENSGT00940000154895.a.a ENSGT00940000155201.d ENSGT01100000263512.a.a.b.a ENSGT00390000008611 ENSGT00390000011932 ENSGT00940000163277 ENSGT00940000156063.l ENSGT00940000159922.a.b ENSGT00940000178415 Turbot MODERN SPECIES 11 mus81 (ENSSMAG00000001412) ovol1a (ENSSMAG00000001401) ENSSMAG00000001370 ENSSMAG00000001348 ENSSMAG00000001245 ENSSMAG00000030318 exoc6b (ENSSMAG00000001157) ENSSMAG00000024691 dysf (ENSSMAG00000000993) ENSSMAG00000036382 ENSSMAG00000023688 ENSSMAG00000000974 ENSSMAG00000000947 ENSSMAG00000000915 ENSSMAG00000000872 dachb (ENSSMAG00000037032) #22 cnpy3 (ENSSMAG00000031586) trpc5a (ENSSMAG00000000764) ENSSMAG00000037107 ENSSMAG00000015692 ENSSMAG00000015720 ENSSMAG00000035385 REELD1 (ENSSMAG00000015757) SLC10A7 (ENSSMAG00000015779) ENSSMAG00000015840 EDNRA (ENSSMAG00000015856) TMEM184C (ENSSMAG00000015871) ENSSMAG00000015892 ENSSMAG00000015923 abce1 (ENSSMAG00000015973) anapc10 (ENSSMAG00000016035) Tongue sole MODERN SPECIES ENSCSEG00000004679 pde5ab (ENSCSEG00000004689) mad2l1 (ENSCSEG00000004726) ARSJ (ENSCSEG00000004731) rpl17 (ENSCSEG00000004760) camk2d1 (ENSCSEG00000004948) cyp26b1 (ENSCSEG00000004973) dysf (ENSCSEG00000004989) ENSCSEG00000005015 ENSCSEG00000005021 pip4p1b (ENSCSEG00000005042) ENSCSEG00000005048 zgc:77880 (ENSCSEG00000005054) stk26 (ENSCSEG00000005056) ENSCSEG00000005073 dachb (ENSCSEG00000005103) #22 cnpy3 (ENSCSEG00000005112) trpc5a (ENSCSEG00000005117) ENSCSEG00000005129 ENSCSEG00000005132 ENSCSEG00000005146 DCLK2 (ENSCSEG00000005158) ednrab (ENSCSEG00000005162) slc10a7 (ENSCSEG00000005165) ENSCSEG00000005173 ENSCSEG00000005175 ENSCSEG00000005189 plod3 (ENSCSEG00000005203) cyb5d1 (ENSCSEG00000005212) ENSCSEG00000005217 ENSCSEG00000005219 Protacanthopterygii ANCESTRAL SPECIES 143 ENSGT00940000164078.a.b.a.a.a ENSGT00940000155150.b.b ENSGT00940000166125 ENSGT01060000249180 ENSGT00390000006178 ENSGT00940000153727.b ENSGT00940000174470 ENSGT00940000165810 ENSGT00940000157482.f ENSGT00940000166658.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a.n ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182 ENSGT00940000158388 ENSGT00530000063000.a.b.a ENSGT00940000160883.a ENSGT01070000253816.a.a.a.c.b ENSGT00990000210151 ENSGT01060000248564.b.a.b.b.b.b ENSGT00950000182962.a.b.b ENSGT01050000244937.a.b.a.b Northern pike MODERN SPECIES 23 NPY2R (ENSELUG00000008187) eif3f (ENSELUG00000008205) pip4p1b (ENSELUG00000008237) ENSELUG00000008248 ENSELUG00000008262 ENSELUG00000008275 ENSELUG00000000303 ENSELUG00000008319 ENSELUG00000027343 ENSELUG00000033763 ENSELUG00000008350 ENSELUG00000008362 ENSELUG00000034645 ENSELUG00000027527 ENSELUG00000008385 dachb (ENSELUG00000008401) #22 ENSELUG00000008413 ENSELUG00000029584 ENSELUG00000008425 ENSELUG00000008430 cnpy3 (ENSELUG00000000311) trpc5a (ENSELUG00000008476) ENSELUG00000005730 ENSELUG00000005762 dysf (ENSELUG00000006056) exoc6b (ENSELUG00000007793) tkfc (ENSELUG00000007754) ENSELUG00000034018 ENSELUG00000007694 ENSELUG00000007702 ENSELUG00000027619 Salmoninae ANCESTRAL SPECIES 354 ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A.g ENSGT01060000248594.e.a.n.a.b ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00390000001134.b.ab.i.b.a.a.b #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c Huchen MODERN SPECIES 4377 ENSHHUG00000040030 #22 Salmoninae_a DUPLICATION Salmoninae_a DUPLICATION Salmoninae_a ANCESTRAL SPECIES 94 ENSGT00390000007844.b.e.a ENSGT00390000000002.a.a.b.i.a ENSGT00390000001803.g ENSGT00940000156167.a.a ENSGT00940000155506.f.a ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a.b ENSGT00940000155150.b.b.c ENSGT00940000166125.a ENSGT00390000006178.a ENSGT00940000157424.m.a.b ENSGT00940000157482.f.b.b ENSGT00940000166658.a.g ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b.i.a #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00390000007844.b.e.a ENSGT00390000000002.a.a.b.i.a ENSGT00390000001803.g ENSGT00940000156167.a.a ENSGT00940000155506.f.a ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a.b ENSGT00940000155150.b.b.c ENSGT00940000166125.a ENSGT00390000006178.a ENSGT00940000157424.m.a.b ENSGT00940000157482.f.a.a.a ENSGT00940000166658.a.g ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b.i.a #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00940000167446 ENSGT00390000012182.rb ENSGT00940000158388.c ENSGT00530000063000.a.b.a.d ENSGT00950000182963.b.b.x.a ENSGT01060000248564.b.a.b.b.b.b.e ENSGT00950000182962.a.b.b.c ENSGT01050000244937.a.b.a.b.c ENSGT01000000220566 ENSGT00940000153763.a.d.a.a ENSGT00950000183118.A.c.b.b Rainbow trout MODERN SPECIES 30 ENSOMYG00000039177 ENSOMYG00000021631 ENSOMYG00000065833 ENSOMYG00000056907 ENSOMYG00000023534 ENSOMYG00000060431 ENSOMYG00000064789 ENSOMYG00000048017 rbm46 (ENSOMYG00000071843) ENSOMYG00000017370 ENSOMYG00000017380 ENSOMYG00000052400 ENSOMYG00000048791 ENSOMYG00000070085 ENSOMYG00000017398 ENSOMYG00000066165 #22 ENSOMYG00000056237 ENSOMYG00000056592 ENSOMYG00000076888 ENSOMYG00000017342 dysf (ENSOMYG00000075925) ENSOMYG00000021560 exoc6b (ENSOMYG00000065358) ENSOMYG00000050924 ENSOMYG00000062750 ENSOMYG00000067500 rcor2 (ENSOMYG00000055979) naa40 (ENSOMYG00000058577) b3gat3 (ENSOMYG00000013202) ENSOMYG00000013221 arl2 (ENSOMYG00000013271) Salmoninae_a ANCESTRAL SPECIES 148 ENSGT00950000182907.a.b.a.a ENSGT00940000155905.b.k ENSGT00940000156323.c.b ENSGT00390000013075.b ENSGT00940000158122.j ENSGT00940000157467.z ENSGT00390000011679 ENSGT00510000047351.b.s ENSGT00940000155973.b.c.d.a ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT01060000248840.b.a.b ENSGT00800000124060.A.a.f ENSGT00390000005739.a.a.q ENSGT00390000015415 ENSGT00390000001134.b.`b.b.i.b #22 ENSGT00390000014072.A.g ENSGT01060000248594.e.a.n.a.b Oncorhynchus ANCESTRAL SPECIES ENSGT00390000001134.b.`b.b.i.b #22 Rainbow trout MODERN SPECIES 13 ENSOMYG00000061706 ENSOMYG00000068538 ENSOMYG00000054671 ENSOMYG00000067550 ENSOMYG00000058414 ENSOMYG00000076514 ENSOMYG00000024133 rnf175 (ENSOMYG00000016691) fgb (ENSOMYG00000073865) fga (ENSOMYG00000056976) ENSOMYG00000065635 ENSOMYG00000024056 ENSOMYG00000051393 zgc:77880 (ENSOMYG00000060039) ENSOMYG00000075790 ENSOMYG00000012002 #22 ENSOMYG00000051074 ENSOMYG00000058779 ENSOMYG00000065277 ENSOMYG00000048693 ENSOMYG00000071042 ENSOMYG00000023713 ENSOMYG00000070401 ENSOMYG00000024019 ENSOMYG00000024003 ENSOMYG00000023971 ENSOMYG00000020500 ENSOMYG00000017475 ENSOMYG00000064038 ENSOMYG00000023777 ENSOMYG00000023865 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00390000001134.b.`b.b.i.b #22 Chinook salmon MODERN SPECIES 974 ENSOTSG00005023231 ENSOTSG00005023230 #22 Salmo ANCESTRAL SPECIES 140 ENSGT00940000162501.c.b ENSGT00940000156171.h.p.a ENSGT00940000155951.a ENSGT00940000155951.b.`b ENSGT00950000182907.a.b.a.a ENSGT00940000155905.b.k ENSGT00940000156323.c.b ENSGT00390000013075.b ENSGT00940000158122.j ENSGT00940000157467.z ENSGT00390000011679 ENSGT00510000047351.b.s ENSGT00940000155973.b.c.d.a ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT00390000001134.b.`b.b.i.b #22 ENSGT00390000014072.A.g ENSGT01060000248594.e.a.n.a.b ENSGT01060000248840.b.a.b ENSGT00800000124060.A.a.f ENSGT00390000005739.a.a.q ENSGT00390000015415 River trout MODERN SPECIES 38 ENSSTUG00000003745 ENSSTUG00000003771 TMEM184C (ENSSTUG00000003809) rnf150b (ENSSTUG00000003956) ENSSTUG00000004004 tec (ENSSTUG00000004463) ENSSTUG00000004678 ENSSTUG00000004686 ENSSTUG00000004703 rnf175 (ENSSTUG00000004967) ENSSTUG00000005001 ENSSTUG00000005052 ENSSTUG00000005055 LRAT (ENSSTUG00000005064) ENSSTUG00000005067 ENSSTUG00000005071 #22 cnpy3 (ENSSTUG00000005090) ENSSTUG00000005107 ENSSTUG00000005162 ENSSTUG00000005166 ENSSTUG00000005185 ENSSTUG00000005190 brms1 (ENSSTUG00000005221) ENSSTUG00000005233 ENSSTUG00000005252 prox3 (ENSSTUG00000005273) tmem179ba (ENSSTUG00000005288) ENSSTUG00000005311 ENSSTUG00000005318 ovol1a (ENSSTUG00000005324) ENSSTUG00000005331 Atlantic salmon MODERN SPECIES 26 ENSSSAG00000042383 ENSSSAG00000085201 ENSSSAG00000049278 ENSSSAG00000044254 ENSSSAG00000003781 ENSSSAG00000119657 rnf175 (ENSSSAG00000010094) fgb (ENSSSAG00000115340) fga (ENSSSAG00000113030) ENSSSAG00000003846 ENSSSAG00000121940 ENSSSAG00000015655 zgc:77880 (ENSSSAG00000003867) pip4p1b (ENSSSAG00000003862) ENSSSAG00000110906 ENSSSAG00000003857 #22 cnpy3 (ENSSSAG00000003877) trpc5a (ENSSSAG00000119977) ENSSSAG00000101621 ENSSSAG00000116019 ENSSSAG00000091100 ENSSSAG00000085707 ENSSSAG00000003898 tkfc (ENSSSAG00000003915) ENSSSAG00000121389 ENSSSAG00000098904 ENSSSAG00000004015 ENSSSAG00000004035 4f2 (ENSSSAG00000004049) prox3 (ENSSSAG00000121496) ENSSSAG00000107439 Salmoninae_a ANCESTRAL SPECIES ENSGT00390000001134.b.`b.b.j #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00390000001134.b.`b.b.j #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00390000001134.b.`b.b.j #22 Coho salmon MODERN SPECIES 29 tfr2 (ENSOKIG00005037846) ENSOKIG00005038154 ENSOKIG00005038171 ENSOKIG00005038198 ENSOKIG00005038366 ENSOKIG00005038378 ENSOKIG00005038399 ENSOKIG00005038411 ENSOKIG00005013109 ENSOKIG00005013112 ENSOKIG00005013125 ENSOKIG00005013176 ENSOKIG00005013182 ENSOKIG00005013186 ENSOKIG00005013189 ENSOKIG00005013198 #22 TRPC5 (ENSOKIG00005013208) CYP26B1 (ENSOKIG00005013242) Otomorpha ANCESTRAL SPECIES 291 ENSGT00940000155905.b ENSGT00940000156323.c.b ENSGT00390000013075.b ENSGT00940000158122 ENSGT00940000157467 ENSGT00390000011679 ENSGT00510000047351.b ENSGT00940000165274.a ENSGT00940000155927 ENSGT00940000155973.b.c ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT00940000166658.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00940000153669.b.p ENSGT00390000012182 Otophysi ANCESTRAL SPECIES 137 ENSGT01050000244937.a.b.a.b ENSGT00950000182962.a.b.b ENSGT01060000248564.b.a.b.b.b.b ENSGT00990000210151 ENSGT00940000160883.a ENSGT00530000063000.a.b.a ENSGT00940000158388.a.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00940000162679 ENSGT00940000156068.i ENSGT00950000183003.a.a.a.a.b.c ENSGT00940000160656 ENSGT00950000182974.a.a.b ENSGT00730000111200 ENSGT00940000156067.g.a ENSGT00940000154507.s ENSGT00530000063825.A.d ENSGT00390000012721.a ENSGT00950000183055.b.b ENSGT00940000165035.b ENSGT00940000157254 ENSGT00940000156385.b ENSGT00940000153168.C.a.a Characiphysae ANCESTRAL SPECIES 60 ENSGT00390000000360 ENSGT00390000012647 ENSGT00940000154783 ENSGT00390000007430 ENSGT00390000010397.a ENSGT00940000158195 ENSGT00390000013075.a ENSGT01050000244937.a.b.a.b ENSGT00950000182962.a.b.b ENSGT01060000248564.b.a.b.b.b.b ENSGT00940000160883.a ENSGT00530000063000.a.b.a ENSGT00940000158388.a.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00940000162679 ENSGT00940000156068.i ENSGT00950000183003.a.a.a.a.b.c ENSGT00940000160656 ENSGT00950000182974.a.a.b ENSGT00730000111200 ENSGT00940000156067.g.a.a ENSGT00940000154507.s ENSGT00530000063825.A.d ENSGT00390000012721.a ENSGT00950000183055.b.b ENSGT00940000165035.b ENSGT00940000157254 ENSGT00940000156385.b ENSGT00940000153168.C.a.a Characiphysae_b ANCESTRAL SPECIES 6 ENSGT00940000154783 ENSGT00390000007430 ENSGT00390000010397.a ENSGT00940000158195 ENSGT00390000013075.a ENSGT01050000244937.a.b.a.b ENSGT00950000182962.a.b.b ENSGT01060000248564.b.a.b.b.b.b ENSGT00940000160883.a ENSGT00530000063000.a.b.a ENSGT00940000164076.a.a ENSGT00940000157094 ENSGT00940000158388.a.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00940000162679 ENSGT00940000156068.i ENSGT00950000183003.a.a.a.a.b.c ENSGT00940000160656 ENSGT00950000182974.a.a.b ENSGT00730000111200 ENSGT00940000156067.g.a.a ENSGT00940000154507.s ENSGT00530000063825.A.d ENSGT00390000012721.a ENSGT00950000183055.b.b ENSGT00940000165035.b ENSGT00940000157254 ENSGT00940000156385.b ENSGT00940000153168.C.a.a Characoidei ANCESTRAL SPECIES 17 ENSGT00940000154783 ENSGT00390000007430 ENSGT00390000010397.a ENSGT00940000158195 ENSGT00390000013075.a ENSGT01050000244937.a.b.a.b ENSGT00950000182962.a.b.b ENSGT01060000248564.b.a.b.b.b.b ENSGT00940000160883.a ENSGT00530000063000.a.b.a ENSGT00940000164076.a.a ENSGT00940000157094 ENSGT00940000158388.a.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00940000162679 ENSGT00940000156068.i ENSGT00950000183003.a.a.a.a.b.c ENSGT00940000160656 ENSGT00950000182974.a.a.b ENSGT00940000168656 ENSGT00940000156067.g.a.a ENSGT00940000154507.s ENSGT00530000063825.A.d ENSGT00390000012721.a ENSGT00950000183055.b.b ENSGT00940000165035.b ENSGT00940000157254 ENSGT00940000156385.b ENSGT00940000153168.C.a.a Red-bellied piranha MODERN SPECIES 306 ENSPNAG00000007005 ENSPNAG00000025019 oxgr1a.2 (ENSPNAG00000025028) kpnb3 (ENSPNAG00000025214) brat1 (ENSPNAG00000006543) ENSPNAG00000025253 LRAT (ENSPNAG00000025267) lratb.2 (ENSPNAG00000003899) rbm46 (ENSPNAG00000025312) npy2rl (ENSPNAG00000025345) eif3f (ENSPNAG00000005495) zgc:77880 (ENSPNAG00000025405) pip4p1b (ENSPNAG00000025456) ENSPNAG00000005375 dachb (ENSPNAG00000005028) #22 cnpy3 (ENSPNAG00000005860) trpc5a (ENSPNAG00000025654) zgc:174945 (ENSPNAG00000025677) ENSPNAG00000025691 mpc2a (ENSPNAG00000025731) atp1b1b (ENSPNAG00000025768) CNGA3 (ENSPNAG00000003971) ENSPNAG00000003978 knstrn (ENSPNAG00000025900) ENSPNAG00000025917 ENSPNAG00000025941 DMD (ENSPNAG00000026008) Electric eel MODERN SPECIES 95 ENSEEEG00000012180 rnf175 (ENSEEEG00000012176) ENSEEEG00000012141 ENSEEEG00000012140 fgb (ENSEEEG00000012138) fga (ENSEEEG00000012136) ENSEEEG00000012134 ENSEEEG00000012132 LRAT (ENSEEEG00000012130) rbm46 (ENSEEEG00000012127) npy2rl (ENSEEEG00000012126) eif3f (ENSEEEG00000012037) zgc:77880 (ENSEEEG00000012030) pip4p1b (ENSEEEG00000012026) FRMD7 (ENSEEEG00000012022) dachb (ENSEEEG00000012020) #22 cnpy3 (ENSEEEG00000012019) trpc5a (ENSEEEG00000012018) ENSEEEG00000012016 ENSEEEG00000012014 ENSEEEG00000012011 atp1b1b (ENSEEEG00000012010) CNGA3 (ENSEEEG00000012009) ENSEEEG00000012008 knstrn (ENSEEEG00000012006) brat1 (ENSEEEG00000011860) kpnb3 (ENSEEEG00000011843) oxgr1a.2 (ENSEEEG00000011840) ENSEEEG00000011835 ENSEEEG00000011833 Cyprinoidei ANCESTRAL SPECIES 136 ENSGT00940000165810 ENSGT00940000174470 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000166125 ENSGT00940000164078.a.b.a.a ENSGT00940000155150.b.b ENSGT00390000001803 ENSGT00940000159536 ENSGT00510000047092 ENSGT00530000063582.a ENSGT00940000158388.a.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00940000162679 ENSGT00940000156068.i.e ENSGT00950000183003.a.a.a.a.b.c ENSGT00940000160656 ENSGT00950000182974.a.a.b ENSGT00730000111200 ENSGT00940000156067.g.a ENSGT00390000009391.b ENSGT00940000158124 ENSGT00940000158076 ENSGT00440000037499.k ENSGT00950000182869.e.a.b ENSGT00940000159831 ENSGT00390000012652.v.b ENSGT00550000074618.a.a.mb Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 34 ENSGT00940000160560.a.b.a.c ENSGT01100000263568.b.a.c.b.b.a.a ENSGT00940000155905.b.b ENSGT00390000013075.b.a ENSGT00940000158122 ENSGT00940000157467 ENSGT00390000011679.b ENSGT00510000047351.b.v ENSGT00940000165274.a.a.a ENSGT00940000155927.x ENSGT00940000155973.b.c.a ENSGT00950000183073.a.a.a.ac ENSGT00940000164842.d ENSGT00390000003680.a.a.b.b ENSGT00940000158972.e.b ENSGT00390000001134.b.`b.b.k #22 ENSGT00390000014072.A.d.b ENSGT01060000248594.e.a.c.a ENSGT00980000199406.a ENSGT00530000063970.e.d ENSGT01060000253390 ENSGT00510000047120.gb.a ENSGT01030000234579.C.l.a ENSGT00940000158737.h ENSGT00940000165457.a.a.a.b.b ENSGT00940000154342.C.gd ENSGT00410000025918.f ENSGT00390000010376.b ENSGT00940000157747.z.b ENSGT00940000156614.a.c.a ENSGT00390000017551.a.b Goldfish MODERN SPECIES 18 ENSCARG00000015189 ENSCARG00000015175 ENSCARG00000015138 ENSCARG00000015156 ENSCARG00000015110 rnf175 (ENSCARG00000015048) fgb (ENSCARG00000015029) fga (ENSCARG00000015010) LRAT (ENSCARG00000015004) lratb.2 (ENSCARG00000014997) rbm46 (ENSCARG00000014988) npy2rl (ENSCARG00000014977) eif3f (ENSCARG00000014860) pip4p1b (ENSCARG00000014825) ENSCARG00000014819 dachb (ENSCARG00000014783) #22 cnpy3 (ENSCARG00000014754) trpc5a (ENSCARG00000014734) zgc:174945 (ENSCARG00000014724) ENSCARG00000014715 ENSCARG00000014700 mpc2a (ENSCARG00000014671) atp1b1b (ENSCARG00000014662) CNGA3 (ENSCARG00000014622) ENSCARG00000014611 crfb15 (ENSCARG00000014606) ENSCARG00000014604 ENSCARG00000014071 arl6 (ENSCARG00000014003) SLC5A7 (ENSCARG00000013990) kctd12.2 (ENSCARG00000023274) Cyprininae_a ANCESTRAL SPECIES 49 ENSGT00940000160560.a.b.a.c.b ENSGT01100000263568.b.a.c.b.b.a.a ENSGT00940000155905.b.b ENSGT00390000013075.b.a ENSGT00940000158122 ENSGT00940000157467 ENSGT00390000011679.b ENSGT00510000047351.b.v ENSGT00940000165274.a.a.a ENSGT00940000155927.x ENSGT00940000155973.b.c.a ENSGT00950000183073.a.a.a.ac ENSGT00940000164842.d ENSGT00390000003680.a.a.b.b ENSGT00940000158972.e.b ENSGT00390000001134.b.`b.b.k #22 ENSGT00390000014072.A.d.b ENSGT01060000248594.e.a.c.a ENSGT00980000199406.a ENSGT00530000063970.e.d ENSGT01060000253390 ENSGT00510000047120.gb.a ENSGT01030000234579.C.l.a ENSGT00940000158737.h.a ENSGT00940000169408 ENSGT00940000165152 ENSGT00940000165457.a.a.a.b.b ENSGT00940000154342.C.gd ENSGT00410000025918.f ENSGT00390000010376.b ENSGT00940000157747.z.b Common carp reference MODERN SPECIES 27 ENSCCRG00000005744 ENSCCRG00000018722 ENSCCRG00000043846 rnf175 (ENSCCRG00000029751) fgb (ENSCCRG00000043820) fga (ENSCCRG00000056454) ENSCCRG00000028280 LRAT (ENSCCRG00000028275) rbm46 (ENSCCRG00000028269) npy2rl (ENSCCRG00000054167) eif3f (ENSCCRG00000000981) zgc:77880 (ENSCCRG00000029331) pip4p1b (ENSCCRG00000050043) ENSCCRG00000055664 ENSCCRG00000080167 dachb (ENSCCRG00000063889) #22 cnpy3 (ENSCCRG00000071051) trpc5a (ENSCCRG00000050050) zgc:174945 (ENSCCRG00000075299) ENSCCRG00000042759 ENSCCRG00000042764 mpc2a (ENSCCRG00000069732) atp1b1b (ENSCCRG00000042777) ENSCCRG00000071357 ENSCCRG00000042713 crfb15 (ENSCCRG00000042827) ENSCCRG00000012377 ENSCCRG00000074693 knstrn (ENSCCRG00000080497) ENSCCRG00000028649 ENSCCRG00000064492 Golden-line barbel MODERN SPECIES 24 pdia2 (ENSSGRG00000010447) ENSSGRG00000010446 ENSSGRG00000010445 ENSSGRG00000010278 rnf175 (ENSSGRG00000010254) fgb (ENSSGRG00000010250) fga (ENSSGRG00000010247) ENSSGRG00000010246 LRAT (ENSSGRG00000010244) lratb.2 (ENSSGRG00000010243) rbm46 (ENSSGRG00000010242) npy2rl (ENSSGRG00000010240) eif3f (ENSSGRG00000010236) pip4p1b (ENSSGRG00000010229) ENSSGRG00000010228 dachb (ENSSGRG00000010223) #22 cnpy3 (ENSSGRG00000010220) trpc5a (ENSSGRG00000010218) zgc:174945 (ENSSGRG00000010217) ENSSGRG00000010216 ENSSGRG00000010215 mpc2a (ENSSGRG00000010214) atp1b1b (ENSSGRG00000010213) CNGA3 (ENSSGRG00000010212) ENSSGRG00000010211 ENSSGRG00000010209 DMD (ENSSGRG00000006108) ENSSGRG00000005979 knstrn (ENSSGRG00000005975) ENSSGRG00000002786 brat1 (ENSSGRG00000002732) Cyprininae ANCESTRAL SPECIES 367 ENSGT00980000202286 ENSGT00940000165626.c ENSGT00940000177130 ENSGT00940000162818.c.a.g.b ENSGT00940000155905.b.a ENSGT00390000013075.b.b ENSGT00390000011679.a ENSGT00510000047351.b.u ENSGT00940000165274.a.b ENSGT00940000155927.w ENSGT00940000155973.b.c.b ENSGT00950000183073.a.a.a.`c ENSGT00940000164842.c ENSGT00390000003680.a.a.b.a ENSGT00940000158972.e.a ENSGT00390000001134.b.`b.b.l #22 ENSGT00390000014072.A.c ENSGT01060000248594.e.a.c.b ENSGT00980000199406.b ENSGT00530000063970.e.c ENSGT00510000047120.gb.b ENSGT01030000234579.C.l.b ENSGT00940000165457.a.a.a.b.a ENSGT00940000154342.C.hd ENSGT00410000025918.e ENSGT00390000010376.a ENSGT00940000157747.z.a Goldfish MODERN SPECIES rgs11 (ENSCARG00000000415) pgap6 (ENSCARG00000000480) rgs11 (ENSCARG00000000722) pdia2 (ENSCARG00000001562) ENSCARG00000001573 ENSCARG00000001577 rnf175 (ENSCARG00000001587) ENSCARG00000001602 LRAT (ENSCARG00000001614) ENSCARG00000001619 npy2rl (ENSCARG00000001623) eif3f (ENSCARG00000001629) zgc:77880 (ENSCARG00000001643) pip4p1b (ENSCARG00000001650) ENSCARG00000001656 dachb (ENSCARG00000001662) #22 cnpy3 (ENSCARG00000001669) trpc5a (ENSCARG00000001675) ENSCARG00000001684 mpc2a (ENSCARG00000001696) atp1b1b (ENSCARG00000001706) crfb15 (ENSCARG00000001713) DMD (ENSCARG00000002006) ENSCARG00000006312 knstrn (ENSCARG00000006334) SDK1 (ENSCARG00000006501) ENSCARG00000008048 ENSCARG00000008050 dnaja1 (ENSCARG00000008062) ENSCARG00000008141 rps6 (ENSCARG00000008188) Cyprininae_a ANCESTRAL SPECIES 82 ENSGT00980000202286 ENSGT00940000165626.c ENSGT00940000177130 ENSGT00940000162818.c.a.g.b ENSGT00940000155905.b.a ENSGT00390000013075.b.b ENSGT00390000011679.a ENSGT00510000047351.b.u ENSGT00940000165274.a.b ENSGT00940000155927.w ENSGT00940000155973.b.c.b ENSGT00950000183073.a.a.a.`c ENSGT00940000164842.c ENSGT00390000003680.a.a.b.a ENSGT00940000158972.e.a ENSGT00390000001134.b.`b.b.l #22 ENSGT00390000014072.A.c ENSGT01060000248594.e.a.c.b ENSGT00980000199406.b ENSGT00530000063970.e.c ENSGT00510000047120.gb.b ENSGT01030000234579.C.l.b ENSGT00940000158737.h.b ENSGT00940000165457.a.a.a.b.a ENSGT00940000154342.C.hd ENSGT00410000025918.e ENSGT00390000010376.a ENSGT00940000157747.z.a ENSGT00940000157636.d ENSGT00390000017551.a.a ENSGT00550000074913.j.a Common carp reference MODERN SPECIES 22 pdia2 (ENSCCRG00000023599) ENSCCRG00000023597 ENSCCRG00000062126 ENSCCRG00000055267 ENSCCRG00000001070 ENSCCRG00000029744 rnf175 (ENSCCRG00000043824) ENSCCRG00000029761 LRAT (ENSCCRG00000029770) lratb.2 (ENSCCRG00000029773) rbm46 (ENSCCRG00000048524) npy2rl (ENSCCRG00000049983) zgc:77880 (ENSCCRG00000015791) pip4p1b (ENSCCRG00000060292) ENSCCRG00000074308 dachb (ENSCCRG00000000642) #22 cnpy3 (ENSCCRG00000072546) trpc5a (ENSCCRG00000015876) ENSCCRG00000039487 ENSCCRG00000023360 mpc2a (ENSCCRG00000042768) atp1b1b (ENSCCRG00000042653) ENSCCRG00000070207 crfb15 (ENSCCRG00000042750) ENSCCRG00000015102 knstrn (ENSCCRG00000051618) ENSCCRG00000068867 ENSCCRG00000081826 ENSCCRG00000052980 ENSCCRG00000067442 brat1 (ENSCCRG00000029322) Golden-line barbel MODERN SPECIES 131 pgap6 (ENSSGRG00000022415) pdia2 (ENSSGRG00000022420) ENSSGRG00000022557 ENSSGRG00000022562 rnf175 (ENSSGRG00000022621) fgb (ENSSGRG00000022637) fga (ENSSGRG00000022638) ENSSGRG00000022645 lratb.2 (ENSSGRG00000022647) rbm46 (ENSSGRG00000022648) npy2rl (ENSSGRG00000022649) eif3f (ENSSGRG00000022650) zgc:77880 (ENSSGRG00000022675) pip4p1b (ENSSGRG00000022679) ENSSGRG00000022691 dachb (ENSSGRG00000022692) #22 cnpy3 (ENSSGRG00000022693) trpc5a (ENSSGRG00000022700) zgc:174945 (ENSSGRG00000022702) ENSSGRG00000022703 ENSSGRG00000022704 Zebrafish MODERN SPECIES ENSDARG00000015678 ENSDARG00000079043 ENSDARG00000076174 rnf175 (ENSDARG00000037647) fgb (ENSDARG00000008969) fga (ENSDARG00000020741) ENSDARG00000104660 LRAT (ENSDARG00000096594) lratb.2 (ENSDARG00000077652) rbm46 (ENSDARG00000079452) npy2rl (ENSDARG00000089943) eif3f (ENSDARG00000077533) zgc:77880 (ENSDARG00000030563) pip4p1b (ENSDARG00000026387) FRMD7 (ENSDARG00000070495) dachb (ENSDARG00000034785) #22 cnpy3 (ENSDARG00000070512) trpc5a (ENSDARG00000070504) zgc:174945 (ENSDARG00000062057) ENSDARG00000067992 ENSDARG00000070502 mpc2a (ENSDARG00000037679) atp1b1b (ENSDARG00000076833) CNGA3 (ENSDARG00000012297) ENSDARG00000087107 crfb15 (ENSDARG00000099342) dmd (ENSDARG00000008487) ENSDARG00000070239 knstrn (ENSDARG00000074379) SDK1 (ENSDARG00000062854) ENSDARG00000092242 Osteoglossiformes ANCESTRAL SPECIES 144 ENSGT00940000156996.f.a.a ENSGT00390000004124.i ENSGT00950000183050.b.b.b.a.b.b.c ENSGT00940000155078.b.a ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00390000008727.a.a.c ENSGT01030000234573.B.c.b.b.e ENSGT00940000159589.h ENSGT00390000005147 ENSGT00940000165810 ENSGT00940000166658.a ENSGT00940000157904 ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00390000014072.A.i ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00940000154344.a.b ENSGT00940000153669.b ENSGT00940000157029.e ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000158388 ENSGT00940000157094 ENSGT00530000063000.a.b.a Asian bonytongue MODERN SPECIES 4 ENSSFOG00015017439 ENSSFOG00015017851 ENSSFOG00015017520 ENSSFOG00015017769 ENSSFOG00015027523 ENSSFOG00015017586 ENSSFOG00015017644 ENSSFOG00015017791 ENSSFOG00015027670 ENSSFOG00015028084 ENSSFOG00015017706 ENSSFOG00015017468 dock11 (ENSSFOG00015017881) ENSSFOG00015029005 ENSSFOG00015017969 ENSSFOG00015033046 #22 ENSSFOG00015017988 #22 CNPY3 (ENSSFOG00015018018) ENSSFOG00015018033 SAP30L (ENSSFOG00015018047) LARP1 (ENSSFOG00015018058) pitx1 (ENSSFOG00015028155) ENSSFOG00015018097 C5orf24 (ENSSFOG00015020164) camlg (ENSSFOG00015018116) sar1b (ENSSFOG00015025146) JADE2 (ENSSFOG00015032730) UBE2B (ENSSFOG00015029512) PPP2CA (ENSSFOG00015027438) skp1 (ENSSFOG00015024661) TCF7 (ENSSFOG00015028011) Osteoglossocephalai ANCESTRAL SPECIES 302 ENSGT00940000165810 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00600000084617 ENSGT00940000157482.e ENSGT00940000166658.a ENSGT00940000157904 ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b Clupeocephala ANCESTRAL SPECIES 74 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000156167.a ENSGT00940000155506.f ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a ENSGT00940000155150.b.b ENSGT00940000166125 ENSGT01060000249180 ENSGT00390000006178 ENSGT00940000153727.b ENSGT00940000174470 ENSGT00940000165810 ENSGT00940000157482.f ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b Otomorpha ANCESTRAL SPECIES 291 ENSGT00940000158122 ENSGT00940000157467 ENSGT00390000011679 ENSGT00510000047351.b ENSGT00940000165274.a ENSGT00940000155927 ENSGT00940000155973.b.c ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT00940000166658.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00940000153669.b.p ENSGT00390000012182 Otophysi ANCESTRAL SPECIES 75 ENSGT00940000158396 ENSGT00390000015484.j ENSGT00940000154245.A.kb ENSGT00940000156722.a ENSGT00940000159136 ENSGT00940000156685 ENSGT00940000159028 ENSGT00940000164655 ENSGT00870000136493.c ENSGT00940000156285 ENSGT00940000176119 ENSGT00940000156931 ENSGT00950000182950.A ENSGT00940000153727.a ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT00940000153669.b.p ENSGT00390000012182 ENSGT00940000166658.a ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.b ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00940000161486 ENSGT00940000166023 ENSGT00940000153304.A ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000159092 ENSGT00500000044890.b Cyprinoidei ANCESTRAL SPECIES 95 ENSGT00940000156722.a ENSGT00940000159136 ENSGT00940000156685 ENSGT00530000063825.A.d ENSGT00940000156339 ENSGT00940000159028 ENSGT00940000164655 ENSGT00870000136493.c ENSGT00940000156285 ENSGT00940000176119 ENSGT00940000156931 ENSGT00950000182950.A ENSGT00940000154593.a.a.e ENSGT00940000153727.a ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000153299.a.b ENSGT00940000153669.b.p ENSGT00390000012182 ENSGT00940000166658.a ENSGT00940000157281 ENSGT00390000011206.b.a ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ENSGT00940000156198.c.b.b ENSGT00940000154998.a.a ENSGT00390000000483.a.a ENSGT00940000164716.B Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 196 ENSGT00940000158628.p.a ENSGT00550000074863.g ENSGT00940000163999.a.q.b ENSGT00940000153818.a.b.a.b.v.a ENSGT00390000016675.e ENSGT01100000263854.b.a ENSGT00390000000378.d.a.o.a ENSGT00940000164330.l ENSGT00390000003682.a.b ENSGT00390000001618 ENSGT00390000000378.d.a.o.b.j ENSGT00940000155585.b ENSGT00390000017203.d ENSGT00950000182987.c.a.b.a.e.a ENSGT00950000182994.A.b #21 ENSGT00390000001134.b.ab.a.a #22 Cyprininae_a ANCESTRAL SPECIES 83 ENSGT00940000167003.b ENSGT00390000014595.a.a.b.f.b ENSGT01030000234550.a.a.c.a.a.m.c ENSGT00530000063751.b.i.e ENSGT00940000165264.a.c ENSGT00940000158628.p.a ENSGT00550000074863.g ENSGT00940000163999.a.q.b ENSGT00940000153818.a.b.a.b.v.a ENSGT00390000016675.e ENSGT00390000000378.d.a.o.a.f ENSGT00940000155585.b ENSGT00390000017203.d ENSGT00950000182987.c.a.b.a.e.a ENSGT00950000182994.A.b #21 ENSGT00390000001134.b.ab.a.a #22 ENSGT00940000159922.a.a.i ENSGT01060000248594.e.a.d.b ENSGT00940000153299.a.b.a.a ENSGT00940000153669.b.p.b ENSGT00390000012182.pb ENSGT00390000012182.qb ENSGT00940000166658.a.c ENSGT00940000157281.r.a.a ENSGT00950000182859.A.a.b.b.d.a.a ENSGT00940000155650.a.b.a ENSGT00940000157770.j.a ENSGT00950000182864.a.b.b.a.b.a.b.f.a ENSGT00390000011206.b.b.a ENSGT00390000007125.b.f ENSGT00390000014412.k.d Common carp reference MODERN SPECIES 38 cryba1b (ENSCCRG00000032294) unc119b (ENSCCRG00000058690) slc13a2 (ENSCCRG00000072983) vtnb (ENSCCRG00000032348) aldh3a2b (ENSCCRG00000032369) traf4b (ENSCCRG00000032397) ddx52 (ENSCCRG00000068823) tlr22 (ENSCCRG00000080320) hnf1bb (ENSCCRG00000018096) heatr6 (ENSCCRG00000018151) dynll2b (ENSCCRG00000056005) srsf1b (ENSCCRG00000079952) pigs (ENSCCRG00000029318) aldocb (ENSCCRG00000028962) chm (ENSCCRG00000029326) #21 dacha (ENSCCRG00000074794) #22 alg13 (ENSCCRG00000039010) ENSCCRG00000039080 hmgb3b (ENSCCRG00000039124) mtmr1b (ENSCCRG00000004352) map4k6 (ENSCCRG00000059691) rnf145b (ENSCCRG00000006311) ENSCCRG00000018557 CLINT1 (ENSCCRG00000031700) ENSCCRG00000031618 ppp2r2bb (ENSCCRG00000031606) ENSCCRG00000005935 CREBRF (ENSCCRG00000071548) BNIP1 (ENSCCRG00000005978) STC2 (ENSCCRG00000006015) bod1 (ENSCCRG00000058933) Goldfish MODERN SPECIES 2830 unc119b (ENSCARG00000058585) slc13a2 (ENSCARG00000058397) vtnb (ENSCARG00000058368) aldh3a2b (ENSCARG00000058116) traf4b (ENSCARG00000058051) ENSCARG00000058039 ddx52 (ENSCARG00000057919) tlr22 (ENSCARG00000057902) hnf1bb (ENSCARG00000057878) heatr6 (ENSCARG00000057643) dynll2b (ENSCARG00000057619) ENSCARG00000057616 srsf1b (ENSCARG00000057598) aldocb (ENSCARG00000057544) chm (ENSCARG00000057524) #21 dacha (ENSCARG00000057479) #22 ENSCARG00000057472 Cyprininae ANCESTRAL SPECIES 110 ENSGT00940000167003.a ENSGT00390000014595.a.a.b.f.a ENSGT01030000234550.a.a.c.a.a.m.d ENSGT00530000063751.b.i.f ENSGT00940000165264.a.d ENSGT00940000158628.p.b ENSGT00550000074863.h ENSGT00940000153818.a.b.a.b.v.b ENSGT00390000016675.f ENSGT00390000017203.c ENSGT00950000182987.c.a.b.a.e.b ENSGT00940000160082.a.b ENSGT00940000166642.f ENSGT00390000014139 ENSGT00950000182994.A.a #21 ENSGT00390000001134.b.ab.a.b #22 ENSGT00940000159922.a.a.j ENSGT01060000248594.e.a.d.a ENSGT00940000153299.a.b.a.b ENSGT00940000153669.b.p.a ENSGT00390000012182.qb ENSGT00940000166658.a.d ENSGT00940000157281.r.a.b ENSGT00950000182859.A.a.b.b.d.a.b ENSGT00940000155650.a.b.b ENSGT00940000161042 ENSGT00940000157770.j.b ENSGT00390000011206.b.a ENSGT00390000007125.b.e Cyprininae_a ANCESTRAL SPECIES 62 ENSGT00530000063751.b.i.f ENSGT00940000165264.a.d ENSGT00940000158628.p.b ENSGT00550000074863.h ENSGT00940000153818.a.b.a.b.v.b ENSGT00390000016675.f ENSGT01100000263854.b.a ENSGT00390000000378.d.a.o.a.e ENSGT00940000164330.l ENSGT00390000017203.c ENSGT00950000182987.c.a.b.a.e.b ENSGT00940000160082.a.b ENSGT00940000166642.f ENSGT00390000014139 ENSGT00950000182994.A.a #21 ENSGT00390000001134.b.ab.a.b #22 ENSGT00940000159922.a.a.j ENSGT01060000248594.e.a.d.a ENSGT00940000153669.b.p.a ENSGT00940000166658.a.d ENSGT00940000157281.r.a.b ENSGT00950000182859.A.a.b.b.d.a.b ENSGT00940000155650.a.b.b ENSGT00940000161042 ENSGT00940000157770.j.b ENSGT00950000182864.a.b.b.a.b.a.b.f.b ENSGT00390000011206.b.b.b ENSGT00390000007125.b.e ENSGT00390000014412.k.c ENSGT00390000005989.a.b.a.b.h ENSGT00940000156198.c.b.b.b.a Common carp reference MODERN SPECIES 45 traf4b (ENSCCRG00000032373) ddx52 (ENSCCRG00000018090) ENSCCRG00000039530 hnf1bb (ENSCCRG00000039527) heatr6 (ENSCCRG00000039526) ENSCCRG00000059153 ENSCCRG00000056945 dynll2b (ENSCCRG00000058799) ENSCCRG00000022508 pigs (ENSCCRG00000022521) aldocb (ENSCCRG00000067286) ENSCCRG00000029273 mrm3b (ENSCCRG00000029278) ENSCCRG00000014148 chm (ENSCCRG00000014136) #21 dacha (ENSCCRG00000062944) #22 alg13 (ENSCCRG00000032980) ENSCCRG00000037088 mtmr1b (ENSCCRG00000017308) ENSCCRG00000020923 map4k6 (ENSCCRG00000020928) rnf145b (ENSCCRG00000020566) ENSCCRG00000072604 CLINT1 (ENSCCRG00000030822) ENSCCRG00000030818 ENSCCRG00000030282 ppp2r2bb (ENSCCRG00000030261) ENSCCRG00000057975 CREBRF (ENSCCRG00000078346) BNIP1 (ENSCCRG00000076550) STC2 (ENSCCRG00000070068) Golden-line barbel MODERN SPECIES 38 unc119b (ENSSGRG00000045826) slc13a2 (ENSSGRG00000045825) vtnb (ENSSGRG00000045824) aldh3a2b (ENSSGRG00000045702) traf4b (ENSSGRG00000045699) ddx52 (ENSSGRG00000045590) ENSSGRG00000045584 hnf1bb (ENSSGRG00000045579) heatr6 (ENSSGRG00000045575) ENSSGRG00000045574 dynll2b (ENSSGRG00000045555) pigs (ENSSGRG00000045552) ENSSGRG00000045551 mrm3b (ENSSGRG00000045545) chm (ENSSGRG00000045542) #21 dacha (ENSSGRG00000045540) #22 alg13 (ENSSGRG00000045539) TRPC5 (ENSSGRG00000045537) mtmr1b (ENSSGRG00000045352) map4k6 (ENSSGRG00000045168) rnf145b (ENSSGRG00000045155) EBF1 (ENSSGRG00000044050) ENSSGRG00000044028 CLINT1 (ENSSGRG00000044027) TCERG1 (ENSSGRG00000043989) ppp2r2bb (ENSSGRG00000043826) PCYOX1L (ENSSGRG00000043824) CREBRF (ENSSGRG00000043793) BNIP1 (ENSSGRG00000043791) STC2 (ENSSGRG00000043790) bod1 (ENSSGRG00000043789) Goldfish MODERN SPECIES 13 slc13a2 (ENSCARG00000009794) vtnb (ENSCARG00000009801) aldh3a2b (ENSCARG00000009821) traf4b (ENSCARG00000010171) ddx52 (ENSCARG00000010183) hnf1bb (ENSCARG00000010194) dynll2b (ENSCARG00000010205) ENSCARG00000010209 srsf1b (ENSCARG00000010218) pigs (ENSCARG00000010251) aldocb (ENSCARG00000010346) ENSCARG00000010435 mrm3b (ENSCARG00000010445) ENSCARG00000010449 chm (ENSCARG00000010473) #21 dacha (ENSCARG00000010526) #22 alg13 (ENSCARG00000010575) TRPC5 (ENSCARG00000010615) hmgb3b (ENSCARG00000010657) mtmr1b (ENSCARG00000010701) ENSCARG00000011056 map4k6 (ENSCARG00000011148) rnf145b (ENSCARG00000013065) EBF1 (ENSCARG00000013117) CLINT1 (ENSCARG00000013940) ENSCARG00000013950 TCERG1 (ENSCARG00000013998) ENSCARG00000014632 ENSCARG00000014636 PCYOX1L (ENSCARG00000014644) CREBRF (ENSCARG00000014657) Cyprininae ANCESTRAL SPECIES 309 ENSGT00390000001134.b.ab.b #22 ENSGT00940000159922.a.a.i ENSGT01060000248594.e.a.d.b ENSGT00940000153299.a.b.a.a ENSGT00940000153669.b.p.b ENSGT00390000012182.pb ENSGT00940000166658.a.c ENSGT00940000157281.r.a.a ENSGT00950000182859.A.a.b.b.d.a.a ENSGT00940000155650.a.b.a ENSGT00940000157770.j.a ENSGT00950000182864.a.b.b.a.b.a.b.f ENSGT00390000011206.b.b.a ENSGT00390000007125.b.f ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b.h Cyprininae_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.b #22 Golden-line barbel MODERN SPECIES 90 unc119b (ENSSGRG00000053686) slc13a2 (ENSSGRG00000053687) vtnb (ENSSGRG00000053688) aldh3a2b (ENSSGRG00000053689) ddx52 (ENSSGRG00000053725) tlr22 (ENSSGRG00000053726) hnf1bb (ENSSGRG00000053727) heatr6 (ENSSGRG00000053728) dynll2b (ENSSGRG00000053745) ENSSGRG00000053749 srsf1b (ENSSGRG00000053750) pigs (ENSSGRG00000053751) aldocb (ENSSGRG00000053779) ENSSGRG00000054232 chm (ENSSGRG00000054233) #21 dacha (ENSSGRG00000054235) #22 alg13 (ENSSGRG00000054236) TRPC5 (ENSSGRG00000054238) hmgb3b (ENSSGRG00000054240) mtmr1b (ENSSGRG00000054242) ENSSGRG00000054244 ENSSGRG00000054246 map4k6 (ENSSGRG00000054251) ENSSGRG00000054341 rnf145b (ENSSGRG00000054345) EBF1 (ENSSGRG00000054348) ENSSGRG00000054351 CLINT1 (ENSSGRG00000054352) TCERG1 (ENSSGRG00000054353) ppp2r2bb (ENSSGRG00000054355) PCYOX1L (ENSSGRG00000054370) Zebrafish MODERN SPECIES 13 rars1 (ENSDARG00000054530) ublcp1 (ENSDARG00000044492) ENSDARG00000054542 ubtd2 (ENSDARG00000069184) adrb2b (ENSDARG00000054510) poglut3 (ENSDARG00000021408) ENSDARG00000079393 ENSDARG00000090202 lipia (ENSDARG00000007108) ENSDARG00000094753 kif20a (ENSDARG00000044491) cdc23 (ENSDARG00000044484) zgc:56585 (ENSDARG00000026236) wdr55 (ENSDARG00000007217) chm (ENSDARG00000003845) #21 dacha (ENSDARG00000010132) #22 alg13 (ENSDARG00000054374) TRPC5 (ENSDARG00000060837) hmgb3b (ENSDARG00000006408) mtmr1b (ENSDARG00000022378) ENSDARG00000111280 map4k6 (ENSDARG00000033444) rnf145b (ENSDARG00000032373) ENSDARG00000092635 EBF1 (ENSDARG00000069196) CLINT1 (ENSDARG00000089914) ENSDARG00000110481 cd74b (ENSDARG00000036628) rps14 (ENSDARG00000036629) ndst1b (ENSDARG00000103606) rbm22 (ENSDARG00000010238) #14 Characiphysae ANCESTRAL SPECIES 211 ENSGT00940000153727.a ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000153299.a.b ENSGT00940000153669.b.p ENSGT00390000012182 ENSGT00940000166658.a ENSGT00940000157281 Characiphysae_b ANCESTRAL SPECIES 286 ENSGT00940000153727.a ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT00940000153669.b.p Characoidei ANCESTRAL SPECIES 387 ENSGT00940000153727.a ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT00940000153669.b.p ENSGT00390000012182 Red-bellied piranha MODERN SPECIES 109 tcf7 (ENSPNAG00000003297) skp1 (ENSPNAG00000014816) ppp2cab (ENSPNAG00000014786) ube2b (ENSPNAG00000014763) cdkn2aipnl (ENSPNAG00000014740) JADE2 (ENSPNAG00000014732) sar1b (ENSPNAG00000014683) SEC24A (ENSPNAG00000014660) slc22a21 (ENSPNAG00000014638) pdlim4 (ENSPNAG00000014621) p4ha2 (ENSPNAG00000014592) JAKMIP2 (ENSPNAG00000014515) dpysl3 (ENSPNAG00000014385) wdr55 (ENSPNAG00000014340) chm (ENSPNAG00000014315) #21 dacha (ENSPNAG00000014289) #22 ENSPNAG00000014257 alg13 (ENSPNAG00000014236) TRPC5 (ENSPNAG00000014126) hmgb3b (ENSPNAG00000014082) mtmr1b (ENSPNAG00000013998) EOLA1 (ENSPNAG00000013491) map4k6 (ENSPNAG00000002774) rnf145b (ENSPNAG00000002664) EBF1 (ENSPNAG00000002637) Mexicana tetra MODERN SPECIES 66 ENSAMXG00000039797 ENSAMXG00000034621 map4k6 (ENSAMXG00000036737) EOLA1 (ENSAMXG00000037454) mtmr1b (ENSAMXG00000036588) TRPC5 (ENSAMXG00000044009) wdr55 (ENSAMXG00000030433) chm (ENSAMXG00000030888) #21 dacha (ENSAMXG00000039333) #22 alg13 (ENSAMXG00000002640) rnf145b (ENSAMXG00000030834) RIMBP2 (ENSAMXG00000002674) ENSAMXG00000031269 ENSAMXG00000031686 ENSAMXG00000038695 TMEM132C (ENSAMXG00000002738) ENSAMXG00000031497 ENSAMXG00000026016 smpd4 (ENSAMXG00000031407) si:ch211-222n4.2 (ENSAMXG00000031218) med15 (ENSAMXG00000040274) ENSAMXG00000037233 crkl (ENSAMXG00000041556) neflb (ENSAMXG00000001050) Electric eel DUPLICATION Electric eel MODERN SPECIES 840 dacha (ENSEEEG00000019853) #22 alg13 (ENSEEEG00000019852) TRPC5 (ENSEEEG00000019851) hmgb3b (ENSEEEG00000019850) mtmr1b (ENSEEEG00000019849) Electric eel MODERN SPECIES 621 ENSEEEG00000020898 ENSEEEG00000020901 DHX30 (ENSEEEG00000000108) wrnip1 (ENSEEEG00000000164) MYLK4 (ENSEEEG00000000190) ENSEEEG00000000204 wdr55 (ENSEEEG00000000218) chm (ENSEEEG00000000265) #21 ENSEEEG00000000328 #22 Channel catfish DUPLICATION Channel catfish MODERN SPECIES 9 TBC1D13 (ENSIPUG00000017179) ralgds (ENSIPUG00000017222) plgrkt (ENSIPUG00000017297) rln1 (ENSIPUG00000017354) jak2 (ENSIPUG00000017375) stard4 (ENSIPUG00000017479) DTWD2 (ENSIPUG00000017499) ENSIPUG00000017534 ENSIPUG00000017597 aurka (ENSIPUG00000017618) dnajc21 (ENSIPUG00000017629) NEDD4L (ENSIPUG00000017643) wdr55 (ENSIPUG00000017695) chm (ENSIPUG00000017705) #21 ENSIPUG00000017766 #22 dacha (ENSIPUG00000017771) #22 ENSIPUG00000017795 alg13 (ENSIPUG00000017821) p4ha2 (ENSIPUG00000017927) ENSIPUG00000018113 ENSIPUG00000018126 GABRG2 (ENSIPUG00000018132) kdelc2 (ENSIPUG00000018146) ENSIPUG00000018173 ENSIPUG00000018209 cdx1b (ENSIPUG00000018217) ENSIPUG00000018251 ENSIPUG00000018639 ENSIPUG00000018647 lipia (ENSIPUG00000018658) camk2a (ENSIPUG00000018689) Channel catfish MODERN SPECIES 9 ZER1 (ENSIPUG00000017121) TBC1D13 (ENSIPUG00000017179) ralgds (ENSIPUG00000017222) plgrkt (ENSIPUG00000017297) rln1 (ENSIPUG00000017354) jak2 (ENSIPUG00000017375) stard4 (ENSIPUG00000017479) DTWD2 (ENSIPUG00000017499) ENSIPUG00000017534 ENSIPUG00000017597 aurka (ENSIPUG00000017618) dnajc21 (ENSIPUG00000017629) NEDD4L (ENSIPUG00000017643) wdr55 (ENSIPUG00000017695) chm (ENSIPUG00000017705) #21 ENSIPUG00000017766 #22 dacha (ENSIPUG00000017771) #22 ENSIPUG00000017795 alg13 (ENSIPUG00000017821) p4ha2 (ENSIPUG00000017927) ENSIPUG00000018113 ENSIPUG00000018126 GABRG2 (ENSIPUG00000018132) kdelc2 (ENSIPUG00000018146) ENSIPUG00000018173 ENSIPUG00000018209 cdx1b (ENSIPUG00000018217) ENSIPUG00000018251 ENSIPUG00000018639 ENSIPUG00000018647 lipia (ENSIPUG00000018658) Clupeiformes ANCESTRAL SPECIES 246 ENSGT00940000155905.b ENSGT00940000156323.c.b ENSGT00390000013075.b ENSGT00940000158122 ENSGT00940000157467 ENSGT00390000011679 ENSGT00510000047351.b ENSGT00940000165274.a ENSGT00940000155927 ENSGT00940000155973.b.c ENSGT00950000183073.a.a.a.cc ENSGT00940000164842 ENSGT00390000003680.a.a.b ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.ab #22 ENSGT00390000014072.A ENSGT00950000182994.A #21 ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00940000153669.b.p ENSGT00390000012182 Atlantic herring MODERN SPECIES 24 ENSCHAG00000012444 atg4a (ENSCHAG00000012475) ANKRD46 (ENSCHAG00000012855) tmem185 (ENSCHAG00000012879) LIMK1 (ENSCHAG00000012978) ppp2r2bb (ENSCHAG00000013282) TCERG1 (ENSCHAG00000013892) ENSCHAG00000014245 ENSCHAG00000014257 CLINT1 (ENSCHAG00000014354) EBF1 (ENSCHAG00000014410) rnf145b (ENSCHAG00000015740) map4k6 (ENSCHAG00000015895) stk26 (ENSCHAG00000016568) ENSCHAG00000016761 dacha (ENSCHAG00000016790) #22 ENSCHAG00000016803 TRPC5 (ENSCHAG00000016821) ENSCHAG00000016876 mtmr1b (ENSCHAG00000016948) ENSCHAG00000016966 ENSCHAG00000016974 CLUH (ENSCHAG00000017011) ENSCHAG00000017879 trarg1b (ENSCHAG00000017961) CRYBA1 (ENSCHAG00000018015) unc119b (ENSCHAG00000018038) slc13a2 (ENSCHAG00000018048) vtnb (ENSCHAG00000018180) ENSCHAG00000000273 aldh3a2b (ENSCHAG00000000308) Denticle herring DUPLICATION Denticle herring MODERN SPECIES 16 npm1a (ENSDCDG00000001887) kcnip1b (ENSDCDG00000001900) kcnip1b (ENSDCDG00000001912) npm1a (ENSDCDG00000001915) npm1a (ENSDCDG00000001918) ENSDCDG00000001920 HRH2 (ENSDCDG00000001925) ENSDCDG00000001931 CLINT1 (ENSDCDG00000001938) EBF1 (ENSDCDG00000001962) rnf145b (ENSDCDG00000001986) map4k6 (ENSDCDG00000002175) stk26 (ENSDCDG00000002601) ENSDCDG00000002617 chm (ENSDCDG00000002621) #21 dacha (ENSDCDG00000002625) #22 ENSDCDG00000002630 alg13 (ENSDCDG00000002634) TRPC5 (ENSDCDG00000002650) ENSDCDG00000002655 hmgb3b (ENSDCDG00000002660) mtmr1b (ENSDCDG00000002678) EOLA1 (ENSDCDG00000002849) septin4a (ENSDCDG00000002862) mntb (ENSDCDG00000003294) ENSDCDG00000004032 pafah1b1b (ENSDCDG00000004037) ENSDCDG00000004052 ENSDCDG00000004060 slc25a1a (ENSDCDG00000004068) nle1 (ENSDCDG00000004157) Denticle herring MODERN SPECIES tlr2 (ENSDCDG00000011041) rnf175 (ENSDCDG00000011062) fgb (ENSDCDG00000011175) fga (ENSDCDG00000011184) ENSDCDG00000011201 LRAT (ENSDCDG00000011221) lratb.2 (ENSDCDG00000011231) rbm46 (ENSDCDG00000011245) rbm46 (ENSDCDG00000011260) npy2rl (ENSDCDG00000011287) eif3f (ENSDCDG00000011334) zgc:77880 (ENSDCDG00000011572) pip4p1b (ENSDCDG00000005370) STK26 (ENSDCDG00000005372) ENSDCDG00000005408 DACH2 (ENSDCDG00000005410) #22 cnpy3 (ENSDCDG00000005427) trpc5a (ENSDCDG00000005428) ENSDCDG00000005434 S100P (ENSDCDG00000005440) ENSDCDG00000005442 kiaa0232 (ENSDCDG00000005443) TBC1D14 (ENSDCDG00000005450) ccl36.1 (ENSDCDG00000010498) ccdc149a (ENSDCDG00000010527) sod3a (ENSDCDG00000010631) dhx15 (ENSDCDG00000010642) PPARGC1A (ENSDCDG00000010686) ADGRA3 (ENSDCDG00000010760) gba3 (ENSDCDG00000010832) KCNIP4 (ENSDCDG00000010857) Euteleosteomorpha ANCESTRAL SPECIES 402 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a.n ENSGT00940000167446 ENSGT00940000153299.a.b Acanthomorphata ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Tiger tail seahorse MODERN SPECIES 689 ENSHCOG00000009687 #22 Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263474.a.b.b.o.b.a ENSGT01100000263559.B ENSGT00940000153092 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a ENSGT01100000263483.F.a ENSGT01100000263483.E.a.c.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 Ovalentaria ANCESTRAL SPECIES 11 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.b.a.a.a.a.b.m.a ENSGT01100000263504.a.b.b.b.a.a.ab.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000178567 ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d ENSGT00390000006721 Ovalentaria_B ANCESTRAL SPECIES 16 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ENSGT01100000263567.a.a.d.b.l ENSGT00950000183089.c.a.k.b.b.m ENSGT01100000263474.a.b.a.b.a.d ENSGT00990000203553.c.a.a.b.a.a.a.a.b.m.a ENSGT01100000263504.a.b.b.b.a.a.ab.b ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000165879 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 Pomacentridae ANCESTRAL SPECIES 150 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d Bicolor damselfish MODERN SPECIES 1941 ENSSPAG00000011283 APBB3 (ENSSPAG00000011197) ENSSPAG00000011180 ENSSPAG00000011174 ENSSPAG00000011164 CAMK2A (ENSSPAG00000011150) rps14 (ENSSPAG00000011124) chm (ENSSPAG00000011007) #21 ENSSPAG00000010992 #22 ENSSPAG00000010988 #22 Pomacentridae_A ANCESTRAL SPECIES 158 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT01100000263483.E.a.c.a.a.b.b ENSGT00390000001134.b.`b.a #22 ENSGT00940000153727.b ENSGT00390000006178 ENSGT00940000156647.b ENSGT01100000263483.B.d ENSGT00940000157138.b ENSGT00940000155506.f ENSGT00940000164655 ENSGT00940000157213 ENSGT00390000009786 ENSGT00940000164917.d ENSGT00940000165810 ENSGT00940000157692 ENSGT00950000182953.C.d Spiny chromis MODERN SPECIES 1310 TACR1 (ENSAPOG00000023965) chm (ENSAPOG00000023933) #21 ENSAPOG00000023906 #22 Cichlidae ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Haplochromini ANCESTRAL SPECIES 465 ENSGT00390000001134.b.ab #22 ENSGT00940000153727.b Burton s mouthbrooder MODERN SPECIES 1116 ENSHBUG00000009138 #22 ik (ENSHBUG00000009122) ndufa2 (ENSHBUG00000009036) ENSHBUG00000009026 Haplochromini_A ANCESTRAL SPECIES 428 ENSGT00390000001134.b.ab #22 ENSGT00940000153727.b Haplochromini_B ANCESTRAL SPECIES 456 ENSGT00390000001134.b.ab #22 ENSGT00940000153727.b Eastern happy MODERN SPECIES 1 chm (ENSACLG00000002316) #21 ENSACLG00000002312 ENSACLG00000002303 APBB3 (ENSACLG00000002077) ENSACLG00000002061 camk2a (ENSACLG00000002047) rps14 (ENSACLG00000002035) ENSACLG00000002028 chm (ENSACLG00000002012) #21 ENSACLG00000001976 ENSACLG00000001968 ENSACLG00000001954 ENSACLG00000001936 ENSACLG00000001882 #22 ik (ENSACLG00000001807) ndufa2 (ENSACLG00000001751) ENSACLG00000001739 ENSACLG00000001724 ENSACLG00000001710 mat2b (ENSACLG00000001687) ENSACLG00000001670 ENSACLG00000001648 ENSACLG00000001604 ENSACLG00000001511 ttc1 (ENSACLG00000001493) pfdn1 (ENSACLG00000001474) ENSACLG00000001469 zgc:110540 (ENSACLG00000001453) ENSACLG00000001429 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Carangaria ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Carangaria_A ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Seriola ANCESTRAL SPECIES ENSGT00390000001134.b.ab #22 Yellowtail amberjack MODERN SPECIES 3176 ENSSLDG00000012482 ARHGAP39 (ENSSLDG00000012447) ENSSLDG00000012418 rad54l (ENSSLDG00000012330) ENSSLDG00000012308 ENSSLDG00000012292 st3gal3a (ENSSLDG00000012265) ENSSLDG00000012165 crata (ENSSLDG00000011790) b4galt6 (ENSSLDG00000011702) ttr (ENSSLDG00000011681) ENSSLDG00000011636 ENSSLDG00000011613 ENSSLDG00000011587 ENSSLDG00000011523 ENSSLDG00000011480 #22 PTPRF (ENSSLDG00000011419) Protacanthopterygii ANCESTRAL SPECIES 143 ENSGT00940000164078.a.b.a.a.a ENSGT00940000155150.b.b ENSGT00940000166125 ENSGT01060000249180 ENSGT00390000006178 ENSGT00940000153727.b ENSGT00940000174470 ENSGT00940000165810 ENSGT00940000157482.f ENSGT00940000166658.a ENSGT00940000157904.b ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00940000159922.a.a ENSGT01060000248594.e.a.n ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182 ENSGT00940000158388 ENSGT00530000063000.a.b.a ENSGT00940000160883.a ENSGT01070000253816.a.a.a.c.b ENSGT00990000210151 ENSGT01060000248564.b.a.b.b.b.b ENSGT00950000182962.a.b.b ENSGT01050000244937.a.b.a.b ENSGT00940000160459 ENSGT01070000253816.a.a.a.d Northern pike MODERN SPECIES 6 ENSELUG00000027186 ENSELUG00000032141 camk2a (ENSELUG00000004019) ENSELUG00000026627 ENSELUG00000004055 ndufa2 (ENSELUG00000034535) ik (ENSELUG00000004120) ENSELUG00000004168 ENSELUG00000034155 ENSELUG00000004192 ENSELUG00000004236 map4k6 (ENSELUG00000004292) stk26 (ENSELUG00000004320) ENSELUG00000004380 chm (ENSELUG00000004415) #21 dacha (ENSELUG00000004462) #22 alg13 (ENSELUG00000004535) TRPC5 (ENSELUG00000004590) ENSELUG00000025155 hmgb3b (ENSELUG00000004658) EOLA1 (ENSELUG00000004680) tmem185 (ENSELUG00000004691) atg4a (ENSELUG00000004744) ENSELUG00000004753 ENSELUG00000004784 ENSELUG00000004799 ENSELUG00000004808 ENSELUG00000004819 ENSELUG00000004882 ENSELUG00000004959 tnfsf10l3 (ENSELUG00000004985) Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 354 ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A.g ENSGT01060000248594.e.a.n.a.b ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00390000001134.b.ab.i.b.a.a.b #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d Salmoninae_a ANCESTRAL SPECIES 94 ENSGT00390000001803.g ENSGT00940000156167.a.a ENSGT00940000155506.f.a ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a.b ENSGT00940000155150.b.b.c ENSGT00940000166125.a ENSGT00390000006178.a ENSGT00940000157424.m.a.b ENSGT00940000157482.f.b.b ENSGT00940000166658.a.g ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b.i.a #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a Salmo ANCESTRAL SPECIES 18 ENSGT00390000000002.a.a.b.i.a ENSGT00390000001803.g ENSGT00940000156167.a.a ENSGT00940000155506.f.a ENSGT00940000157138.b.a ENSGT00940000164078.a.b.a.a.b ENSGT00940000155150.b.b.c ENSGT00940000166125.a ENSGT00390000006178.a ENSGT00940000157424.m.a.b ENSGT00940000157482.f.b.b ENSGT00940000166658.a.g ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182.rb ENSGT00940000158388.c ENSGT00530000063000.a.b.a.d ENSGT01060000248564.b.a.b.b.b.b.e ENSGT00950000182962.a.b.b.c ENSGT01050000244937.a.b.a.b.c ENSGT01000000220566 ENSGT00940000153763.a.d.a.a ENSGT00950000183118.A.c.b.b ENSGT00950000183068.a.a.a.a.c.a ENSGT00940000165121.a.i Atlantic salmon MODERN SPECIES 23 ENSSSAG00000001522 ENSSSAG00000001536 CSF1R (ENSSSAG00000001705) ENSSSAG00000101088 ENSSSAG00000003134 ENSSSAG00000086162 CAMK2A (ENSSSAG00000003202) ENSSSAG00000099918 ENSSSAG00000003293 ENSSSAG00000003308 RTN3 (ENSSSAG00000003331) ENSSSAG00000003743 MST4 (ENSSSAG00000039513) ENSSSAG00000040773 chm (ENSSSAG00000040816) #21 dacha (ENSSSAG00000040931) #22 alg13 (ENSSSAG00000040978) ENSSSAG00000041066 ENSSSAG00000084873 hmgb3b (ENSSSAG00000041554) t185l (ENSSSAG00000041594) ENSSSAG00000041660 ENSSSAG00000115011 ENSSSAG00000041948 ENSSSAG00000104813 ENSSSAG00000042049 ENSSSAG00000042198 ENSSSAG00000044616 ENSSSAG00000119437 ENSSSAG00000083632 slc7a3a (ENSSSAG00000069327) River trout MODERN SPECIES 10 APBB3 (ENSSTUG00000042590) ENSSTUG00000042563 sra1 (ENSSTUG00000042471) CSF1R (ENSSTUG00000039586) ENSSTUG00000039175 cdx1b (ENSSTUG00000039158) camk2a (ENSSTUG00000039085) ENSSTUG00000039073 ndufa2 (ENSSTUG00000039064) ENSSTUG00000039043 ENSSTUG00000039020 map4k6 (ENSSTUG00000037448) stk26 (ENSSTUG00000036982) frmd7 (ENSSTUG00000036940) chm (ENSSTUG00000036884) #21 dacha (ENSSTUG00000036846) #22 alg13 (ENSSTUG00000036825) TRPC5 (ENSSTUG00000036637) ENSSTUG00000036493 hmgb3b (ENSSTUG00000036483) ENSSTUG00000036471 tmem185 (ENSSTUG00000036462) atg4a (ENSSTUG00000036393) ENSSTUG00000036384 ENSSTUG00000036364 ENSSTUG00000036353 CLCN5 (ENSSTUG00000034695) PHKA1 (ENSSTUG00000032925) ENSSTUG00000032634 ENSSTUG00000032620 RAB39B (ENSSTUG00000032615) Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00390000001803.g ENSGT00940000156167.a.a ENSGT00940000155506.f.a ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a.b ENSGT00940000155150.b.b.c ENSGT00940000166125.a ENSGT00390000006178.a ENSGT00940000157424.m.a.b ENSGT00940000157482.f.a.a.a ENSGT00940000166658.a.g ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b.i.a #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00940000167446 ENSGT00390000012182.rb ENSGT00940000158388.c ENSGT00530000063000.a.b.a.d ENSGT00950000182963.b.b.x.a ENSGT01060000248564.b.a.b.b.b.b.e ENSGT00950000182962.a.b.b.c ENSGT01050000244937.a.b.a.b.c ENSGT01000000220566 ENSGT00940000153763.a.d.a.a ENSGT00950000183118.A.c.b.b ENSGT00950000183068.a.a.a.a.c.a ENSGT00940000165121.a.i Rainbow trout MODERN SPECIES 1 rps14 (ENSOMYG00000047264) ENSOMYG00000047260 ENSOMYG00000047258 ENSOMYG00000047252 ENSOMYG00000047152 ENSOMYG00000047089 ENSOMYG00000047068 ENSOMYG00000047058 ENSOMYG00000047045 ENSOMYG00000047033 rtn3 (ENSOMYG00000047026) ENSOMYG00000046788 ENSOMYG00000046521 ENSOMYG00000046500 chm (ENSOMYG00000046491) #21 dacha (ENSOMYG00000046464) #22 alg13 (ENSOMYG00000046447) ENSOMYG00000046437 ENSOMYG00000046431 ENSOMYG00000046417 ENSOMYG00000071163 ENSOMYG00000046412 tmem185 (ENSOMYG00000046408) atg4a (ENSOMYG00000046359) ENSOMYG00000046328 ENSOMYG00000046324 ENSOMYG00000046319 ENSOMYG00000046317 ENSOMYG00000046315 ENSOMYG00000074892 ENSOMYG00000042969 Oncorhynchus_a ANCESTRAL SPECIES 76 ENSGT00390000000002.a.a.b.i.a ENSGT00390000001803.g ENSGT00940000156167.a.a ENSGT00940000155506.f.a ENSGT00940000157138.b ENSGT00940000164078.a.b.a.a.b ENSGT00940000155150.b.b.c ENSGT00940000166125.a ENSGT00390000006178.a ENSGT00940000157424.m.a.b ENSGT00940000157482.f.a.a.a ENSGT00940000166658.a.g ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00390000012182.rb ENSGT00940000158388.c ENSGT00530000063000.a.b.a.d ENSGT00950000182963.b.b.x.a ENSGT01060000248564.b.a.b.b.b.b.e ENSGT00950000182962.a.b.b.c ENSGT01050000244937.a.b.a.b.c Chinook salmon MODERN SPECIES 23 APBB3 (ENSOTSG00005013678) sra1 (ENSOTSG00005013684) ENSOTSG00005013687 CSF1R (ENSOTSG00005013698) PDGFRB (ENSOTSG00005016000) cdx1b (ENSOTSG00005016001) camk2a (ENSOTSG00005016006) ENSOTSG00005016828 ndufa2 (ENSOTSG00005016829) ENSOTSG00005016830 ENSOTSG00005016831 map4k6 (ENSOTSG00005016850) stk26 (ENSOTSG00005022702) ENSOTSG00005022722 chm (ENSOTSG00005022728) #21 dacha (ENSOTSG00005022768) #22 alg13 (ENSOTSG00005022770) TRPC5 (ENSOTSG00005022771) ENSOTSG00005020319 ENSOTSG00005020321 ENSOTSG00005020323 tmem185 (ENSOTSG00005020326) atg4a (ENSOTSG00005020347) ENSOTSG00005021649 ENSOTSG00005021659 ENSOTSG00005021667 HTR2C (ENSOTSG00005021676) ENSOTSG00005021677 ENSOTSG00005021678 Coho salmon MODERN SPECIES 20 APBB3 (ENSOKIG00005039860) ENSOKIG00005039840 ENSOKIG00005039815 CSF1R (ENSOKIG00005038265) ENSOKIG00005038087 ENSOKIG00005038049 CAMK2A (ENSOKIG00005048184) NDUFA2 (ENSOKIG00005048160) ENSOKIG00005048143 ENSOKIG00005048129 map4k6 (ENSOKIG00005047555) stk26 (ENSOKIG00005047280) frmd7 (ENSOKIG00005047239) frmd7 (ENSOKIG00005047232) chm (ENSOKIG00005047171) #21 dacha (ENSOKIG00005047156) #22 alg13 (ENSOKIG00005047132) TRPC5 (ENSOKIG00005047086) ENSOKIG00005047070 tmem185 (ENSOKIG00005047048) atg4a (ENSOKIG00005046832) ENSOKIG00005046817 ENSOKIG00005046815 ENSOKIG00005046813 ENSOKIG00005046803 ENSOKIG00005046784 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.a #22 Huchen MODERN SPECIES 2831 ENSHHUG00000014693 dacha (ENSHHUG00000014641) #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.a #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.a #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.a #22 Chinook salmon MODERN SPECIES 26 ENSOTSG00005004888 cdx1b (ENSOTSG00005005825) ENSOTSG00005005827 ENSOTSG00005005830 ENSOTSG00005005832 ENSOTSG00005005835 ENSOTSG00005005837 ENSOTSG00005005838 ndufa2 (ENSOTSG00005005842) ik (ENSOTSG00005005845) ENSOTSG00005005863 ENSOTSG00005005865 ENSOTSG00005005868 map4k6 (ENSOTSG00005005870) stk26 (ENSOTSG00005005902) dacha (ENSOTSG00005006594) #22 alg13 (ENSOTSG00005006598) TRPC5 (ENSOTSG00005006602) zgc:171772 (ENSOTSG00005006652) ENSOTSG00005006653 hmgb3b (ENSOTSG00005006654) ENSOTSG00005006655 tmem185 (ENSOTSG00005006656) atg4a (ENSOTSG00005006659) ENSOTSG00005006774 ENSOTSG00005006783 ENSOTSG00005006983 ENSOTSG00005006984 ENSOTSG00005006985 ENSOTSG00005006986 ENSOTSG00005007120 Salmoninae ANCESTRAL SPECIES 354 ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A.g ENSGT01060000248594.e.a.n.a.b ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00390000001134.b.ab.i.b.a.a.b #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d ENSGT01050000244937.a.b.a.b.d Huchen MODERN SPECIES 1433 dacha (ENSHHUG00000030871) #22 alg13 (ENSHHUG00000030831) TRPC5 (ENSHHUG00000030762) ENSHHUG00000030704 hmgb3b (ENSHHUG00000030684) ENSHHUG00000030680 tmem185 (ENSHHUG00000030664) atg4a (ENSHHUG00000030626) ENSHHUG00000030624 ENSHHUG00000030617 ENSHHUG00000030600 HTR2C (ENSHHUG00000030585) Salmoninae_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.b #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.b #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.a.b #22 Coho salmon MODERN SPECIES 155 ENSOKIG00005020848 #22 Salmoninae ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.b #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.b #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.a.b #22 Oncorhynchus_a ANCESTRAL SPECIES 20 ENSGT00390000000002.a.a.b.i.b ENSGT00390000001803.h.a.a ENSGT00940000156167.a.b ENSGT00940000155506.f.b ENSGT00940000164078.a.b.a.a.a ENSGT00940000159769.a.b.v ENSGT00940000166125.b ENSGT01060000249180 ENSGT00390000006178.b ENSGT00940000153727.b ENSGT00940000157424.m.a.a ENSGT00940000165810 ENSGT00940000157482.f.b.a ENSGT00940000166658.a.h ENSGT00940000157904.b.e.b ENSGT00390000001134.b.ab.i.b.a.b #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000175508.a.b.l.a.a.b.b.a.a.b.a.b.b.b ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d ENSGT01050000244937.a.b.a.b.d ENSGT00940000160459 ENSGT01070000253816.a.a.a.c.b ENSGT00940000153763.a.d.a.b Coho salmon MODERN SPECIES 21 SRA1 (ENSOKIG00005050178) ENSOKIG00005050183 ENSOKIG00005050227 cdx1b (ENSOKIG00005050303) ENSOKIG00005050312 ENSOKIG00005050326 ENSOKIG00005050328 ENSOKIG00005050335 ndufa2 (ENSOKIG00005050358) ik (ENSOKIG00005050384) ENSOKIG00005050440 ENSOKIG00005050448 ENSOKIG00005036554 ENSOKIG00005036655 ENSOKIG00005037236 dacha (ENSOKIG00005037906) #22 alg13 (ENSOKIG00005037929) TRPC5 (ENSOKIG00005037967) ENSOKIG00005038055 hmgb3b (ENSOKIG00005038063) ENSOKIG00005038080 tmem185 (ENSOKIG00005038099) atg4a (ENSOKIG00005038163) ENSOKIG00005038434 ENSOKIG00005038508 ENSOKIG00005039532 ENSOKIG00005039575 ENSOKIG00005039587 ENSOKIG00005039616 ENSOKIG00005039729 tnfsf10l3 (ENSOKIG00005039752) Salmoninae ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.b #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.b #22 Salmo ANCESTRAL SPECIES ENSGT00390000001134.b.ab.i.b.b #22 Atlantic salmon MODERN SPECIES 2 ENSSSAG00000111654 ENSSSAG00000087278 CAMK2A (ENSSSAG00000047455) ENSSSAG00000120268 ENSSSAG00000047345 NDUA2 (ENSSSAG00000047339) ENSSSAG00000047282 ENSSSAG00000094745 ENSSSAG00000047255 ENSSSAG00000047159 ENSSSAG00000047138 ENSSSAG00000046622 MST4 (ENSSSAG00000046485) ENSSSAG00000105323 ENSSSAG00000096649 dacha (ENSSSAG00000119340) #22 ENSSSAG00000046222 ENSSSAG00000085645 ENSSSAG00000045979 ENSSSAG00000045957 ENSSSAG00000045930 ENSSSAG00000113349 ENSSSAG00000044782 atg4a (ENSSSAG00000108187) ENSSSAG00000044756 ENSSSAG00000044748 ENSSSAG00000044720 ENSSSAG00000044682 ENSSSAG00000044637 tnfsf10l3 (ENSSSAG00000044624) ENSSSAG00000042623 Salmoninae ANCESTRAL SPECIES 354 ENSGT00940000157904.b.e.a ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00390000014072.A.g ENSGT01060000248594.e.a.n.a.b ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab.i.a #22 ENSGT00390000001134.b.ab.i.b.a.a.b #22 ENSGT00940000159922.a.a.a ENSGT01060000248594.e.a.n.b.a ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d ENSGT01050000244937.a.b.a.b.d ENSGT00940000160459 ENSGT01070000253816.a.a.a.d.a ENSGT00940000153763.a.c Salmoninae_a ANCESTRAL SPECIES 12 ENSGT00390000000002.a.a.b.i.b ENSGT00390000001803.h.b ENSGT00940000156167.a.b ENSGT00940000155506.f.b ENSGT00940000164078.a.b.a.a.a ENSGT00940000155150.b.b.d ENSGT00940000166125.b ENSGT01060000249180 ENSGT00390000006178.b ENSGT00940000153727.b ENSGT00940000157424.m.a.a ENSGT00940000165810 ENSGT00940000157482.f.b.a ENSGT00940000166658.a.h ENSGT00940000157904.b.e.b ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d ENSGT01050000244937.a.b.a.b.d ENSGT01070000253816.a.a.a.c.b ENSGT00940000153763.a.d.a.b ENSGT00510000050937.f Salmo ANCESTRAL SPECIES 1 ENSGT00390000001803.h.b ENSGT00940000156167.a.b ENSGT00940000155506.f.b ENSGT00940000157138.b.b ENSGT00940000164078.a.b.a.a.a ENSGT00940000155150.b.b.d ENSGT00940000166125.b ENSGT01060000249180 ENSGT00390000006178.b ENSGT00940000153727.b ENSGT00940000157424.m.a.a ENSGT00940000165810 ENSGT00940000157482.f.b.a ENSGT00940000166658.a.h ENSGT00940000157904.b.e.b ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d ENSGT01050000244937.a.b.a.b.d ENSGT01070000253816.a.a.a.c.b ENSGT00940000153763.a.d.a.b ENSGT00940000176224 ENSGT00950000183068.a.a.a.a.c.b ENSGT00940000158132.n.b River trout MODERN SPECIES 3 sra1 (ENSSTUG00000025823) ENSSTUG00000025816 ENSSTUG00000024980 cdx1b (ENSSTUG00000024936) ENSSTUG00000024926 CAMK2A (ENSSTUG00000020321) ENSSTUG00000020030 ENSSTUG00000019978 ndufa2 (ENSSTUG00000019964) ik (ENSSTUG00000019692) ENSSTUG00000019653 ENSSTUG00000019500 ENSSTUG00000019434 map4k6 (ENSSTUG00000019157) stk26 (ENSSTUG00000018843) ENSSTUG00000018822 #22 alg13 (ENSSTUG00000018797) TRPC5 (ENSSTUG00000018769) ENSSTUG00000018742 tmem185 (ENSSTUG00000018731) atg4a (ENSSTUG00000018650) ENSSTUG00000018639 ENSSTUG00000018151 ENSSTUG00000018117 ENSSTUG00000018108 ENSSTUG00000018101 ENSSTUG00000018078 ENSSTUG00000018058 tnfsf10l3 (ENSSTUG00000018052) CLCN5 (ENSSTUG00000015514) ENSSTUG00000015171 Oncorhynchus ANCESTRAL SPECIES 18 ENSGT00390000000002.a.a.b.j ENSGT00390000001803.h.a.a ENSGT00940000156167.a.b ENSGT00940000155506.f.b ENSGT00940000164078.a.b.a.a.a ENSGT00940000155150.b.b.d ENSGT00940000166125.b ENSGT01060000249180 ENSGT00390000006178.b ENSGT00940000153727.b ENSGT00940000157424.m.a.a ENSGT00940000165810 ENSGT00940000157482.f.b.a ENSGT00940000166658.a.h ENSGT00940000157904.b.e.b ENSGT00390000001134.b.ab.j #22 ENSGT00940000159922.a.a.b ENSGT01060000248594.e.a.n.b.b ENSGT00940000153299.a.b ENSGT00390000012182.sb ENSGT00940000158388.d ENSGT00530000063000.a.b.a.c ENSGT00940000160883.a ENSGT00950000182963.b.b.x.b ENSGT01060000248564.b.a.b.b.b.b.f ENSGT00950000182962.a.b.b.d ENSGT01050000244937.a.b.a.b.d ENSGT00940000160459 ENSGT01070000253816.a.a.a.c.b ENSGT00940000153763.a.d.a.b ENSGT00510000050937.f Rainbow trout MODERN SPECIES 364 ENSOMYG00000057675 ENSOMYG00000065902 ENSOMYG00000065999 ENSOMYG00000045127 ENSOMYG00000050467 ENSOMYG00000038870 ENSOMYG00000038468 ENSOMYG00000038419 ndufa2 (ENSOMYG00000038217) ENSOMYG00000038168 ENSOMYG00000038117 ENSOMYG00000038069 ENSOMYG00000044600 ENSOMYG00000044577 ENSOMYG00000044566 ENSOMYG00000059883 #22 alg13 (ENSOMYG00000044537) ENSOMYG00000044506 ENSOMYG00000062052 hmgb3b (ENSOMYG00000044486) cx04a (ENSOMYG00000044478) tmem185 (ENSOMYG00000044470) atg4a (ENSOMYG00000044174) ENSOMYG00000044135 ENSOMYG00000043515 ENSOMYG00000043346 ENSOMYG00000043336 ENSOMYG00000043322 ENSOMYG00000064551 ENSOMYG00000043286 tnfsf10l3 (ENSOMYG00000043264) Oncorhynchus_a ANCESTRAL SPECIES ENSGT00390000001134.b.ab.j #22 Chinook salmon MODERN SPECIES 315 ENSOTSG00005017157 ENSOTSG00005017156 #22 Osteoglossiformes ANCESTRAL SPECIES 144 ENSGT00950000183050.b.b.b.a.b.b.c ENSGT00940000155078.b.a ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00390000008727.a.a.c ENSGT01030000234573.B.c.b.b.e ENSGT00940000159589.h ENSGT00390000005147 ENSGT00940000165810 ENSGT00940000166658.a ENSGT00940000157904 ENSGT00940000158972 ENSGT00390000001134.b.`b.b #22 ENSGT00950000182994.A #21 ENSGT00390000001134.b.ab #22 ENSGT00390000014072.A.i ENSGT00940000159922.a.a ENSGT01060000248594.e.a ENSGT00940000167446 ENSGT00940000153299.a.b ENSGT00940000154344.a.b ENSGT00940000153669.b ENSGT00940000157029.e ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000158388 ENSGT00940000157094 ENSGT00530000063000.a.b.a ENSGT00940000153991.a.a ENSGT00940000164076.a.a Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 4 ENSSFOG00015017851 ENSSFOG00015017520 ENSSFOG00015017769 ENSSFOG00015027523 ENSSFOG00015017586 ENSSFOG00015017644 ENSSFOG00015017791 ENSSFOG00015027670 ENSSFOG00015028084 ENSSFOG00015017706 ENSSFOG00015017468 dock11 (ENSSFOG00015017881) ENSSFOG00015029005 ENSSFOG00015017969 ENSSFOG00015033046 #22 ENSSFOG00015017988 #22 CNPY3 (ENSSFOG00015018018) ENSSFOG00015018033 SAP30L (ENSSFOG00015018047) LARP1 (ENSSFOG00015018058) pitx1 (ENSSFOG00015028155) ENSSFOG00015018097 C5orf24 (ENSSFOG00015020164) camlg (ENSSFOG00015018116) sar1b (ENSSFOG00015025146) JADE2 (ENSSFOG00015032730) UBE2B (ENSSFOG00015029512) PPP2CA (ENSSFOG00015027438) skp1 (ENSSFOG00015024661) TCF7 (ENSSFOG00015028011) ENSSFOG00015018254 Asian bonytongue MODERN SPECIES 19 PELI3 (ENSSFOG00015020853) rab1ba (ENSSFOG00015028927) FAM89B (ENSSFOG00015032276) znrd2 (ENSSFOG00015025010) ENSSFOG00015020777 mta2 (ENSSFOG00015020740) EML3 (ENSSFOG00015020646) ecsit (ENSSFOG00015020625) ENSSFOG00015020589 ENSSFOG00015020566 rtn3 (ENSSFOG00015027032) map4k6 (ENSSFOG00015020483) stk26 (ENSSFOG00015020436) frmd7 (ENSSFOG00015026940) chm (ENSSFOG00015020395) #21 dacha (ENSSFOG00015020312) #22 cnpy3 (ENSSFOG00015026356) alg13 (ENSSFOG00015020262) TRPC5 (ENSSFOG00015020187) ENSSFOG00015020252 hmgb3b (ENSSFOG00015029576) cd99l2 (ENSSFOG00015020154) mtmr1b (ENSSFOG00015019959) mtm1 (ENSSFOG00015019864) ENSSFOG00015019828 EOLA1 (ENSSFOG00015031217) ENSSFOG00015029161 ENSSFOG00015019799 tmem185 (ENSSFOG00015027327) ANKRD46 (ENSSFOG00015028568) atg4a (ENSSFOG00015019730) P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 371 ENSPKIG00000015714 ENSPKIG00000015733 ecsit (ENSPKIG00000015773) ENSPKIG00000015803 map4k6 (ENSPKIG00000015828) stk26 (ENSPKIG00000015877) chm (ENSPKIG00000015918) #21 ENSPKIG00000015934 dacha (ENSPKIG00000015954) #22 cnpy3 (ENSPKIG00000015975) alg13 (ENSPKIG00000015998) TRPC5 (ENSPKIG00000016031) ENSPKIG00000016039 hmgb3b (ENSPKIG00000016060) cd99l2 (ENSPKIG00000016107) mtmr1b (ENSPKIG00000016210) mtm1 (ENSPKIG00000016419) ENSPKIG00000016489 P. kingsleyae MODERN SPECIES 539 DACH2 (ENSPKIG00000002679) #22 Elephant shark MODERN SPECIES 1487 BRWD3 (ENSCMIG00000007328) sh3bgrl (ENSCMIG00000007216) ENSCMIG00000007214 ENSCMIG00000007209 ENSCMIG00000007202 ENSCMIG00000007200 POU3F4 (ENSCMIG00000007197) #10 rps6kal (ENSCMIG00000006380) #12 HDX (ENSCMIG00000006110) #13 ENSCMIG00000006064 ENSCMIG00000006030 #16 ENSCMIG00000006025 znf711 (ENSCMIG00000006021) #19 ENSCMIG00000006015 #20 chm (ENSCMIG00000006000) #21 dacha (ENSCMIG00000005996) #22 ENSCMIG00000005991 klhl4 (ENSCMIG00000005990) #23 PCDH11Y (ENSCMIG00000005982) #31 ENSCMIG00000005979 ENSCMIG00000005978 ENSCMIG00000005977 DIAPH2 (ENSCMIG00000005957) pcdh19 (ENSCMIG00000005948) TNMD (ENSCMIG00000005946) elf1 (ENSCMIG00000005939) aifm1 (ENSCMIG00000005902) faah2b (ENSCMIG00000005875) ENSCMIG00000005869 clic2 (ENSCMIG00000005867) ENSCMIG00000005853