Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000162488	ENSGT00950000183107.a.b.b	ENSGT00730000111570	ENSGT00940000156017	ENSGT00390000011425.A	ENSGT00940000164351	ENSGT00940000161429	ENSGT00730000111075.b #10	ENSGT00940000159242 #11	ENSGT00390000008591 #12	ENSGT00530000063666.a #17	ENSGT00950000183121.b.b.b.a #18	ENSGT00940000159611 #19	ENSGT00390000000141 #20	ENSGT00950000182994.A.n.a #21	ENSGT00390000001134.b #22
Caprinae	ANCESTRAL SPECIES	53									ENSGT00940000159242 #11	ENSGT00390000008591 #12	ENSGT00530000063666.a #17	ENSGT00950000183121.b.b.b.a #18	ENSGT00940000159611 #19	ENSGT00390000000141 #20	ENSGT00950000182994.A.n.a #21	ENSGT00390000001134.b #22	ENSGT00940000159803 #27	ENSGT00510000047092 #28	ENSGT00940000158744 #29	ENSGT00390000005685 #30	ENSGT00940000160294 #31	ENSGT00390000016992.s #32	ENSGT00940000154783.f #33	ENSGT00390000012647 #34	ENSGT00390000006885.a #35	ENSGT00390000000360.r.d.b #36	ENSGT00950000183068.a.a	ENSGT00390000018904 #37	ENSGT00940000158132	ENSGT00390000016992.t ##32	ENSGT00940000163020.bb
Rambouillet Sheep	MODERN SPECIES	205	GAS2 (ENSOARG00020020094) #7	SVIP (ENSOARG00020020165) #8	CCDC179 (ENSOARG00020020216) #9	CYLC1 (ENSOARG00020020266) #10	RPS6KA6 (ENSOARG00020020348) #11	HDX (ENSOARG00020021028) #12	ENSOARG00020021109 #13	ENSOARG00020021130 #14	ENSOARG00020021167 #15	ENSOARG00020021215 #16	APOOL (ENSOARG00020021301) #17	ENSOARG00020021396 #18	ZNF711 (ENSOARG00020021464) #19	POF1B (ENSOARG00020021532) #20	CHM (ENSOARG00020021776) #21	DACH2 (ENSOARG00020021981) #22	ENSOARG00020022547 #23	ENSOARG00020022607 #24	ENSOARG00020022613 #25	ENSOARG00020022631 #26	GAB3 (ENSOARG00020015493) #27	DKC1 (ENSOARG00020015553) #28	MPP1 (ENSOARG00020015726) #29	SMIM9 (ENSOARG00020015879) #30	F8 (ENSOARG00020015985) #31	ENSOARG00020016962 #32	FUNDC2 (ENSOARG00020017001) #33	CMC4 (ENSOARG00020017081) #34	MTCP1 (ENSOARG00020017110) #35	BRCC3 (ENSOARG00020017169) #36	VBP1 (ENSOARG00020017496) #37
Goat	DUPLICATION
Goat	MODERN SPECIES	56																ENSCHIG00000017586 #22
Goat	MODERN SPECIES	29	ATRX (ENSCHIG00000013700)	MAGT1 (ENSCHIG00000013861)	ATP7A (ENSCHIG00000016420)	ENSCHIG00000003253	ENSCHIG00000002486	TAF9B (ENSCHIG00000018621)	ENSCHIG00000022832	PGK1 (ENSCHIG00000009440)	ENSCHIG00000017553	ENSCHIG00000011572	UPRT (ENSCHIG00000016731)	ENSCHIG00000018015	ZNF711 (ENSCHIG00000011383) #19	POF1B (ENSCHIG00000020154) #20	CHM (ENSCHIG00000022478) #21	ENSCHIG00000016036 #22	ENSCHIG00000011958	CYLC1 (ENSCHIG00000015857) #10	POU3F4 (ENSCHIG00000002076)	ENSCHIG00000004218	ENSCHIG00000016967	ENSCHIG00000004429	ENSCHIG00000012493 #11	HDX (ENSCHIG00000008366) #12	MAGEE2 (ENSCHIG00000007901)	ZDHHC15 (ENSCHIG00000012700)	ABCB7 (ENSCHIG00000005807)	NEXMIF (ENSCHIG00000014641)	RLIM (ENSCHIG00000019610)	SLC16A2 (ENSCHIG00000015992)	ZCCHC13 (ENSCHIG00000019132)
Bovinae	ANCESTRAL SPECIES	38	ENSGT00940000162488	ENSGT00950000183107.a.b.b	ENSGT00730000111570	ENSGT00940000156017	ENSGT00390000011425.A	ENSGT00940000164351	ENSGT00940000161429	ENSGT00730000111075.b #10	ENSGT00940000159242 #11	ENSGT00390000008591 #12	ENSGT00530000063666.a #17	ENSGT00950000183121.b.b.b.a #18	ENSGT00940000159611 #19	ENSGT00390000000141 #20	ENSGT00950000182994.A.n.a #21	ENSGT00390000001134.b #22
Bos	ANCESTRAL SPECIES	30	ENSGT00730000111570	ENSGT00940000156017	ENSGT00390000011425.A	ENSGT00940000164351	ENSGT00940000161429	ENSGT00730000111075.b #10	ENSGT00920000150804	ENSGT00940000159242 #11	ENSGT01030000235010.e.a	ENSGT00390000008591 #12	ENSGT00530000063666.a #17	ENSGT00950000183121.b.b.b.a #18	ENSGT00940000159611 #19	ENSGT00390000000141 #20	ENSGT00950000182994.A.n.a #21	ENSGT00390000001134.b #22	ENSGT00950000183097.a.a.a	ENSGT00940000160039	ENSGT00940000159971	ENSGT01050000244937.a.b.a	ENSGT00940000159055	ENSGT00990000203589.a.b.a.b	ENSGT01060000248594.e.a	ENSGT00390000018248	ENSGT00940000159922.b	ENSGT00510000047493	ENSGT00950000183232	ENSGT00940000161570	ENSGT00940000156128.b	ENSGT00950000182988.a.b.b.b	ENSGT00390000005057.h.a.b.d
Bos_a	ANCESTRAL SPECIES	19	ENSGT00730000111570	ENSGT00940000156017	ENSGT00390000011425.A	ENSGT00940000164351	ENSGT00940000161429	ENSGT00730000111075.b #10	ENSGT00920000150804	ENSGT00940000159242 #11	ENSGT01030000235010.e.a	ENSGT00390000008591 #12	ENSGT00530000063666.a #17	ENSGT00950000183121.b.b.b.a #18	ENSGT00940000159611 #19	ENSGT00390000000141 #20	ENSGT00950000182994.A.n.a #21	ENSGT00390000001134.b #22	ENSGT00950000183097.a.a.a	ENSGT00940000160039	ENSGT00940000159971	ENSGT01050000244937.a.b.a	ENSGT00940000159055	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.b	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.b.b	ENSGT00940000155313	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.b.a.b.a.b	ENSGT00390000010391
Wild yak	MODERN SPECIES	268																DACH2 (ENSBMUG00000026497) #22	ENSBMUG00000026498	ENSBMUG00000026499
Domestic yak	MODERN SPECIES	69	SH3BGRL (ENSBGRG00000013469)	ENSBGRG00000013446	ENSBGRG00000013400	ENSBGRG00000013359	POU3F4 (ENSBGRG00000013340)	CYLC1 (ENSBGRG00000013173) #10	RPS6KA6 (ENSBGRG00000012307) #11	ENSBGRG00000025377	HDX (ENSBGRG00000025367) #12	ENSBGRG00000025313 #16	ENSBGRG00000025291 #18	APOOL (ENSBGRG00000025225) #17	ZNF711 (ENSBGRG00000025171) #19	POF1B (ENSBGRG00000025068) #20	CHM (ENSBGRG00000024881) #21	DACH2 (ENSBGRG00000024724) #22	PLS3 (ENSBGRG00000024473)	ENSBGRG00000024443	LRCH2 (ENSBGRG00000024233)	IL13RA2 (ENSBGRG00000024134)	HTR2C (ENSBGRG00000024094)	AMOT (ENSBGRG00000023864)	LHFPL1 (ENSBGRG00000023789)	ENSBGRG00000023774	TRPC5OS (ENSBGRG00000023756)	TRPC5 (ENSBGRG00000023665)	ALG13 (ENSBGRG00000023625)	ENSBGRG00000023530	SERTM2 (ENSBGRG00000023522)	DCX (ENSBGRG00000023448)	CAPN6 (ENSBGRG00000023382)
Bos_b	ANCESTRAL SPECIES	31	ENSGT00730000111570	ENSGT00940000156017	ENSGT00390000011425.A	ENSGT00940000164351	ENSGT00940000161429	ENSGT00730000111075.b #10	ENSGT00920000150804	ENSGT00940000159242 #11	ENSGT01030000235010.e.a	ENSGT00390000008591 #12	ENSGT00530000063666.a #17	ENSGT00950000183121.b.b.b.a #18	ENSGT00940000159611 #19	ENSGT00390000000141 #20	ENSGT00950000182994.A.n.a #21	ENSGT00390000001134.b #22	ENSGT00950000183097.a.a.a	ENSGT00940000160039	ENSGT00940000159971	ENSGT00390000005057.h.b.b	ENSGT00890000139472.h.a.b	ENSGT01050000244937.a.b.a	ENSGT00940000153201.j.u.i.b	ENSGT00940000159055	ENSGT00990000203589.a.b.a.b	ENSGT01060000248594.e.a	ENSGT00390000018248	ENSGT00940000159922.b	ENSGT00510000047493	ENSGT00950000183232	ENSGT00940000161570
Cow	MODERN SPECIES	177	ENSBTAG00000051658	ENSBTAG00000039066	POU3F4 (ENSBTAG00000015712)	CYLC1 (ENSBTAG00000047417) #10	ENSBTAG00000048589	RPS6KA6 (ENSBTAG00000002015) #11	ENSBTAG00000055024	HDX (ENSBTAG00000051806) #12	ENSBTAG00000027867 #16	APOOL (ENSBTAG00000021790) #17	ENSBTAG00000013077 #18	ZNF711 (ENSBTAG00000002668) #19	POF1B (ENSBTAG00000014485) #20	ENSBTAG00000046941	CHM (ENSBTAG00000009598) #21	DACH2 (ENSBTAG00000044037) #22	ENSBTAG00000049980	PLS3 (ENSBTAG00000011613)	ENSBTAG00000046463	LRCH2 (ENSBTAG00000050382)	IL13RA2 (ENSBTAG00000020022)	ENSBTAG00000046327	ENSBTAG00000053214	ENSBTAG00000055095	HTR2C (ENSBTAG00000054073)	ENSBTAG00000050670	ENSBTAG00000016688	AMOT (ENSBTAG00000016221)	LHFPL1 (ENSBTAG00000032485)	ENSBTAG00000051180	TRPC5OS (ENSBTAG00000049974)
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005023627	RPS6KA6 (ENSBIXG00005004019) #11	ENSBIXG00005022982	ENSBIXG00005022974	ENSBIXG00005005756	ENSBIXG00005022936	HDX (ENSBIXG00005022875) #12	ENSBIXG00005022647 #16	APOOL (ENSBIXG00005022564) #17	ENSBIXG00005022499 #18	ZNF711 (ENSBIXG00005003824) #19	POF1B (ENSBIXG00005022276) #20	ENSBIXG00005022230	CHM (ENSBIXG00005022182) #21	ENSBIXG00005022091	DACH2 (ENSBIXG00005003727) #22	ENSBIXG00005007070	PLS3 (ENSBIXG00005003665)	ENSBIXG00005021585	LRCH2 (ENSBIXG00005021533)	IL13RA2 (ENSBIXG00005007068)	ENSBIXG00005021395	ENSBIXG00005005873	ENSBIXG00005007160	HTR2C (ENSBIXG00005021329)	ENSBIXG00005007729	AMOT (ENSBIXG00005021243)	LHFPL1 (ENSBIXG00005021192)	TRPC5 (ENSBIXG00005021071)	TRPC5OS (ENSBIXG00005021048)	ENSBIXG00005021029