Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00960000191907	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT01000000219986 #16	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234 #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000017929	ENSGT00390000010054.b #27	ENSGT00940000162201 #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT01030000235076	ENSGT00940000156247 #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34
Episquamata	ANCESTRAL SPECIES	3	ENSGT00960000191907	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT01000000219986 #16	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234 #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000010054.b #27	ENSGT00940000162201 #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT00940000156247 #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34	ENSGT00940000160197	ENSGT00940000157221.r #37
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000159958	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT01000000219986 #16	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234 #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000010054.b #27	ENSGT00940000162201.c #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT00940000156247 #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34	ENSGT00940000160197	ENSGT00940000157221.r #37
Elapidae	ANCESTRAL SPECIES	22	ENSGT00940000159958	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT01000000219986 #16	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234.t #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000010054.b #27	ENSGT00940000162201.c #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT00940000156247 #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34	ENSGT00940000160197	ENSGT00940000157221.r #37
Indian cobra	MODERN SPECIES	3	ENSNNAG00000017714 #7	ENSNNAG00000017717 #8	ENSNNAG00000017720 #9	UCHL1 (ENSNNAG00000017722) #10	APBB2 (ENSNNAG00000017725) #11	NSUN7 (ENSNNAG00000017731) #12	CHRNA9 (ENSNNAG00000017734) #13	RHOH (ENSNNAG00000017740) #14	N4BP2 (ENSNNAG00000017743) #15	ENSNNAG00000017753 #16	PDS5A (ENSNNAG00000017842) #17	UBE2K (ENSNNAG00000018179) #18	ENSNNAG00000018189 #19	UGDH (ENSNNAG00000004575) #20	LIAS (ENSNNAG00000004592) #21	RPL9 (ENSNNAG00000004630) #22	KLB (ENSNNAG00000004660) #23	RFC1 (ENSNNAG00000004724) #24	WDR19 (ENSNNAG00000005035) #25	KLHL5 (ENSNNAG00000005168) #26	FAM114A1 (ENSNNAG00000005196) #27	TLR6 (ENSNNAG00000005256) #28	KLF3 (ENSNNAG00000005269) #29	TBC1D1 (ENSNNAG00000005416) #30	PGM2 (ENSNNAG00000007219) #31	RELL1 (ENSNNAG00000007248) #32	NWD2 (ENSNNAG00000007268) #33	DTHD1 (ENSNNAG00000007301) #34	ENSNNAG00000007348 #35	ENSNNAG00000007360 #36	PCDH7 (ENSNNAG00000007378) #37
Elapidae_a	ANCESTRAL SPECIES	25	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234.t #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000010054.b #27	ENSGT00940000162201.c #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT00940000156247.r #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34	ENSGT00940000160197	ENSGT00940000157221.r #37
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234.t #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000010054.b #27	ENSGT00940000162201.c #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT00940000156247.r #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34	ENSGT00940000160197	ENSGT00940000157221.r #37
Eastern brown snake	MODERN SPECIES	12	ENSPTXG00000018236 #9	ENSPTXG00000018237 #9	UCHL1 (ENSPTXG00000018238) #10	APBB2 (ENSPTXG00000018239) #11	NSUN7 (ENSPTXG00000000067) #12	RBM47 (ENSPTXG00000000179)	CHRNA9 (ENSPTXG00000000204) #13	RHOH (ENSPTXG00000000216) #14	N4BP2 (ENSPTXG00000000229) #15	PDS5A (ENSPTXG00000000258) #17	UBE2K (ENSPTXG00000000300) #18	SMIM14 (ENSPTXG00000000316) #19	UGDH (ENSPTXG00000000326) #20	LIAS (ENSPTXG00000000363) #21	ENSPTXG00000000375 ##21	RPL9 (ENSPTXG00000000384) #22	KLB (ENSPTXG00000000400) #23	RFC1 (ENSPTXG00000000555) #24	WDR19 (ENSPTXG00000002040) #25	ENSPTXG00000003132 #26	ENSPTXG00000003133 #26	FAM114A1 (ENSPTXG00000003136) #27	TLR6 (ENSPTXG00000003138) #28	KLF3 (ENSPTXG00000003142) #29	TBC1D1 (ENSPTXG00000003167) #30	PGM2 (ENSPTXG00000004690) #31	RELL1 (ENSPTXG00000004695) #32	ENSPTXG00000004697	NWD2 (ENSPTXG00000004699) #33	DTHD1 (ENSPTXG00000004701) #34	ARAP2 (ENSPTXG00000004702)
Mainland tiger snake	MODERN SPECIES	71		PHOX2B (ENSNSUG00000018796)	ENSNSUG00000018795 #9	ENSNSUG00000018794 #9	UCHL1 (ENSNSUG00000018793) #10	APBB2 (ENSNSUG00000018792) #11	NSUN7 (ENSNSUG00000018791) #12	RBM47 (ENSNSUG00000018790)	CHRNA9 (ENSNSUG00000018789) #13	RHOH (ENSNSUG00000018788) #14	PDS5A (ENSNSUG00000016214) #17	UBE2K (ENSNSUG00000016196) #18	SMIM14 (ENSNSUG00000016195) #19	UGDH (ENSNSUG00000016110) #20	LIAS (ENSNSUG00000016109) #21	RPL9 (ENSNSUG00000016108) #22	KLB (ENSNSUG00000016107) #23	RFC1 (ENSNSUG00000016106) #24	WDR19 (ENSNSUG00000016028) #25	KLHL5 (ENSNSUG00000015953) #26	ENSNSUG00000015952 #27	KLF3 (ENSNSUG00000015945) #29	ENSNSUG00000015944	PGM2 (ENSNSUG00000015943) #31	RELL1 (ENSNSUG00000015942) #32	ENSNSUG00000015941	NWD2 (ENSNSUG00000015940) #33	DTHD1 (ENSNSUG00000015939) #34	ARAP2 (ENSNSUG00000015887)	PCDH7 (ENSNSUG00000015884) #37	ENSNSUG00000015883
Blue-lipped sea krait	MODERN SPECIES	10712																RPL9 (ENSLLTG00000010643) #22	KLB (ENSLLTG00000010690) #23
Lizard	MODERN SPECIES	4	UCHL1 (ENSACAG00000011963) #10	ENSACAG00000011914 #11	NSUN7 (ENSACAG00000011865) #12	RBM47 (ENSACAG00000011833)	ENSACAG00000039884	ENSACAG00000035975	CHRNA9 (ENSACAG00000011789) #13	RHOH (ENSACAG00000011782) #14	N4BP2 (ENSACAG00000011734) #15	PDS5A (ENSACAG00000011372) #17	UBE2K (ENSACAG00000011290) #18	SMIM14 (ENSACAG00000042151) #19	ENSACAG00000038904 #20	ENSACAG00000007185 #20	LIAS (ENSACAG00000007260) #21	ENSACAG00000007317 #22	ENSACAG00000036958	ENSACAG00000007375	ENSACAG00000007720	TPRKB (ENSACAG00000043507)	alg10 (ENSACAG00000043495)	CPNE8 (ENSACAG00000007800)	ENSACAG00000007881	ENSACAG00000039733	KIF21A (ENSACAG00000007925)	ABCD2 (ENSACAG00000008119)	ENSACAG00000037840	SLC2A13 (ENSACAG00000008170)	ENSACAG00000036674	LRRK2 (ENSACAG00000008207)	ENSACAG00000038858
Laterata	ANCESTRAL SPECIES	21	ENSGT00940000159958	ENSGT00960000191907	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #15	ENSGT00940000155155 #17	ENSGT00670000098059 #18	ENSGT00390000018294 #19	ENSGT00390000015355 #20	ENSGT00390000006234 #21	ENSGT00390000015224.d.l #22	ENSGT00940000157489 #23	ENSGT00730000111066 #24	ENSGT00590000083165 #25	ENSGT00940000155358 #26	ENSGT00390000010054.b #27	ENSGT00940000162201 #28	ENSGT00940000157456 #29	ENSGT00940000157949 #30	ENSGT00940000156247 #31	ENSGT00940000159709 #32	ENSGT00390000013778	ENSGT00940000153648.b #33	ENSGT00940000153404.b #34	ENSGT00940000160197	ENSGT01030000234945
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	17	FRYL (ENSPMRG00000009473)	OCIAD1 (ENSPMRG00000009093)	OCIAD2 (ENSPMRG00000009088)	CWH43 (ENSPMRG00000009074)	DCUN1D4 (ENSPMRG00000009062)	SGCB (ENSPMRG00000009051)	RBM47 (ENSPMRG00000009040)	CHRNA9 (ENSPMRG00000009026) #13	RHOH (ENSPMRG00000014130) #14	N4BP2 (ENSPMRG00000014104) #15	PDS5A (ENSPMRG00000014082) #17	UBE2K (ENSPMRG00000014068) #18	SMIM14 (ENSPMRG00000014058) #19	UGDH (ENSPMRG00000014040) #20	LIAS (ENSPMRG00000014026) #21	ENSPMRG00000014016 #22	KLB (ENSPMRG00000013996) #23	RFC1 (ENSPMRG00000013977) #24	ENSPMRG00000013955 #25	ENSPMRG00000013946 #25	KLHL5 (ENSPMRG00000013921) #26	FAM114A1 (ENSPMRG00000013908) #27	ENSPMRG00000013901	ENSPMRG00000013897 #28	ENSPMRG00000013893 #28	KLF3 (ENSPMRG00000013889) #29	TBC1D1 (ENSPMRG00000013821) #30	PGM2 (ENSPMRG00000013805) #31	ENSPMRG00000013801	RELL1 (ENSPMRG00000013797) #32	C4orf19 (ENSPMRG00000013793)
Common wall lizard	MODERN SPECIES	14	DOK5 (ENSPMRG00000003538)	CBLN4 (ENSPMRG00000003548)	ENSPMRG00000003556	MC3R (ENSPMRG00000003576)	FAM210B (ENSPMRG00000003581)	AURKA (ENSPMRG00000003589)	CSTF1 (ENSPMRG00000003603)	CASS4 (ENSPMRG00000003614)	RTF2 (ENSPMRG00000003622)	GCNT7 (ENSPMRG00000003624)	TFAP2C (ENSPMRG00000003627)	ENSPMRG00000003632	ENSPMRG00000003636	ENSPMRG00000003637	BMP7 (ENSPMRG00000003639)	ENSPMRG00000003644 #22	ENSPMRG00000003647	RBM38 (ENSPMRG00000003653)	ENSPMRG00000003669	PCK1 (ENSPMRG00000003673)	PMEPA1 (ENSPMRG00000003680)	ENSPMRG00000003683	ENSPMRG00000003686	ENSPMRG00000003687	RAB22A (ENSPMRG00000003691)	VAPB (ENSPMRG00000003697)	APCDD1L (ENSPMRG00000003699)	ENSPMRG00000003702	NPEPL1 (ENSPMRG00000003713)	ENSPMRG00000003754	ENSPMRG00000003775
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	1	ARAP2 (ENSSMRG00000002189)	DTHD1 (ENSSMRG00000002220) #34	NWD2 (ENSSMRG00000002231) #33	ENSSMRG00000002251	RELL1 (ENSSMRG00000002260) #32	PGM2 (ENSSMRG00000002267) #31	TBC1D1 (ENSSMRG00000002348) #30	KLF3 (ENSSMRG00000002464) #29	ENSSMRG00000002469 #28	N4BP2 (ENSSMRG00000002471) #15	PDS5A (ENSSMRG00000002567) #17	UBE2K (ENSSMRG00000002609) #18	SMIM14 (ENSSMRG00000002613) #19	UGDH (ENSSMRG00000002620) #20	LIAS (ENSSMRG00000002628) #21	ENSSMRG00000002631 #22	KLB (ENSSMRG00000002640) #23	RFC1 (ENSSMRG00000002691) #24	WDR19 (ENSSMRG00000002885) #25	KLHL5 (ENSSMRG00000002929) #26	FAM114A1 (ENSSMRG00000002974) #27	ENSSMRG00000003012 #28	RHOH (ENSSMRG00000003138) #14	CHRNA9 (ENSSMRG00000003143) #13	RBM47 (ENSSMRG00000003149)	NSUN7 (ENSSMRG00000003268) #12	APBB2 (ENSSMRG00000003280) #11	UCHL1 (ENSSMRG00000003310) #10	LIMCH1 (ENSSMRG00000003375) #9	ENSSMRG00000003445	PHOX2B (ENSSMRG00000003448)
Argentine black and white tegu	MODERN SPECIES	50	IQCK (ENSSMRG00000017047)	GPRC5B (ENSSMRG00000017044)	GPR139 (ENSSMRG00000017043)	UMOD (ENSSMRG00000017042)	PDILT (ENSSMRG00000017036)	ENSSMRG00000017034	ENSSMRG00000017031	ENSSMRG00000017029	C16orf89 (ENSSMRG00000017028)	ENSSMRG00000017025	ENSSMRG00000017024	ENSSMRG00000017019	ENSSMRG00000017017	ENSSMRG00000017015	ENSSMRG00000017014	ENSSMRG00000017004 #22	RBFOX1 (ENSSMRG00000017001)	TMEM114 (ENSSMRG00000017000)	METTL22 (ENSSMRG00000016997)	ABAT (ENSSMRG00000016995)	TMEM186 (ENSSMRG00000016994)	PMM2 (ENSSMRG00000016993)	CARHSP1 (ENSSMRG00000016992)	ENSSMRG00000016991	USP7 (ENSSMRG00000016989)	HAPSTR1 (ENSSMRG00000016988)	TEKT4 (ENSSMRG00000016987)	C1QTNF8 (ENSSMRG00000016985)	SSTR5 (ENSSMRG00000016983)	SOX8 (ENSSMRG00000016979)	LMF1 (ENSSMRG00000016975)
tuatara	MODERN SPECIES	720					RBM47 (ENSSPUG00000007515)	CHRNA9 (ENSSPUG00000007546) #13	RHOH (ENSSPUG00000007558) #14	ENSSPUG00000007574 #15	ENSSPUG00000007579 #15	ENSSPUG00000007589 #15	PDS5A (ENSSPUG00000007594) #17	UBE2K (ENSSPUG00000007619) #18	SMIM14 (ENSSPUG00000007630) #19	UGDH (ENSSPUG00000007637) #20	LIAS (ENSSPUG00000007647) #21	RPL9 (ENSSPUG00000007659) #22	KLB (ENSSPUG00000007675) #23	RFC1 (ENSSPUG00000007697) #24	WDR19 (ENSSPUG00000007739) #25	KLHL5 (ENSSPUG00000007970) #26	ENSSPUG00000007976	FAM114A1 (ENSSPUG00000007983) #27	TLR6 (ENSSPUG00000007994) #28	KLF3 (ENSSPUG00000008005) #29	ENSSPUG00000008029 #30	ENSSPUG00000008051 #30	ENSSPUG00000008057	PGM2 (ENSSPUG00000008063) #31	RELL1 (ENSSPUG00000008072) #32