Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00390000001195.a	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374.u	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00390000001195.a	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Marmotini	ANCESTRAL SPECIES	108	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374.u	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00390000001195.a	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Marmotini_b	ANCESTRAL SPECIES	246								ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00390000001195.a	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Squirrel	MODERN SPECIES	280									NTRK2 (ENSSTOG00000008937) #15	AGTPBP1 (ENSSTOG00000001961) #16	NAA35 (ENSSTOG00000015631) #17	ENSSTOG00000024100 #18	ENSSTOG00000028077 #19	ISCA1 (ENSSTOG00000000582) #20	TUT7 (ENSSTOG00000000586) #21	DAPK1 (ENSSTOG00000015490) #22	ENSSTOG00000015504 #23
Arctic ground squirrel	MODERN SPECIES	302										NAA35 (ENSUPAG00010023699) #17	GOLM1 (ENSUPAG00010023698) #18	ENSUPAG00010023697	ISCA1 (ENSUPAG00010023696) #20	TUT7 (ENSUPAG00010023694) #21	GAS1 (ENSUPAG00010023687)	DAPK1 (ENSUPAG00010023679) #22	ENSUPAG00010023673
Alpin marmot	MODERN SPECIES	68	DNA2 (ENSMMMG00000009618)	RUFY2 (ENSMMMG00000009654)	ENSMMMG00000009862	PBLD (ENSMMMG00000009871)	ATOH7 (ENSMMMG00000010063)	MYPN (ENSMMMG00000010068)	HERC4 (ENSMMMG00000010126)	ENSMMMG00000010229	ENSMMMG00000010250	CTNNA3 (ENSMMMG00000010289)	LRRTM3 (ENSMMMG00000010362)	ENSMMMG00000010382	ENSMMMG00000010389	ENSMMMG00000010403	REEP3 (ENSMMMG00000010412)	DAPK1 (ENSMMMG00000010458) #22	ENSMMMG00000010528
Eurasian red squirrel	MODERN SPECIES	6	KIF27 (ENSSVLG00005025080)	ENSSVLG00005025013	HNRNPK (ENSSVLG00005024963)	RMI1 (ENSSVLG00005024865)	ENSSVLG00005024855	ENSSVLG00005024836	SLC28A3 (ENSSVLG00005024780)	NTRK2 (ENSSVLG00005024628) #15	AGTPBP1 (ENSSVLG00005024487) #16	NAA35 (ENSSVLG00005024431) #17	GOLM1 (ENSSVLG00005024384) #18	ENSSVLG00005024339	ISCA1 (ENSSVLG00005024297) #20	TUT7 (ENSSVLG00005024220) #21	GAS1 (ENSSVLG00005024195)	DAPK1 (ENSSVLG00005024152) #22	ENSSVLG00005024080 #23	ENSSVLG00005024060
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00390000001195.a	ENSGT00940000153424.a.b #22
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00940000153424.a.b #22
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181 #15	ENSGT00940000157707 #16	ENSGT00390000002445 #17	ENSGT00530000063675.b #18	ENSGT00940000164141	ENSGT00490000043385 #20	ENSGT00940000156859 #21	ENSGT00940000153424.a.b #22
Long-tailed chinchilla	MODERN SPECIES	139	C9orf64 (ENSCLAG00000002920)	HNRNPK (ENSCLAG00000005883)	RMI1 (ENSCLAG00000017662)	SLC28A3 (ENSCLAG00000005357)	ENSCLAG00000005146	NTRK2 (ENSCLAG00000004746) #15	ENSCLAG00000004540	AGTPBP1 (ENSCLAG00000009351) #16	NAA35 (ENSCLAG00000008861) #17	GOLM1 (ENSCLAG00000008736) #18	ENSCLAG00000008692	ENSCLAG00000007775 #20	TUT7 (ENSCLAG00000007535) #21	ENSCLAG00000007415	ENSCLAG00000007321	DAPK1 (ENSCLAG00000006636) #22
Degu	MODERN SPECIES	152	HNRNPK (ENSODEG00000005637)	RMI1 (ENSODEG00000004954)	ENSODEG00000006844	SLC28A3 (ENSODEG00000004732)	NTRK2 (ENSODEG00000005490) #15	ENSODEG00000005328	AGTPBP1 (ENSODEG00000005635) #16	NAA35 (ENSODEG00000005083) #17	ENSODEG00000005810 #18	ENSODEG00000019211	ENSODEG00000005480 #20	ENSODEG00000006904 #21	ENSODEG00000006376 #21	ENSODEG00000004592 #21	ENSODEG00000005716	DAPK1 (ENSODEG00000005070) #22	ENSODEG00000005255	ATP12A (ENSODEG00000005612)	ENSODEG00000005443	CENPJ (ENSODEG00000004803)	ENSODEG00000004571	ENSODEG00000005412	ENSODEG00000007817	ENSODEG00000007655	ENSODEG00000007331	ENSODEG00000019072	ZMYM2 (ENSODEG00000004718)	GJB2 (ENSODEG00000019286)	GJB6 (ENSODEG00000019244)	ENSODEG00000005772	CRYL1 (ENSODEG00000005341)
Guinea pig	MODERN SPECIES	11	UBQLN1 (ENSCPOG00000004849)	ENSCPOG00000023953	GKAP1 (ENSCPOG00000034577)	ENSCPOG00000020823	KIF27 (ENSCPOG00000002485)	C9orf64 (ENSCPOG00000001990)	ENSCPOG00000005024	RMI1 (ENSCPOG00000010177)	SLC28A3 (ENSCPOG00000013188)	NTRK2 (ENSCPOG00000032833) #15	AGTPBP1 (ENSCPOG00000019771) #16	NAA35 (ENSCPOG00000032357) #17	GOLM1 (ENSCPOG00000003829) #18	ENSCPOG00000032645 #20	TUT7 (ENSCPOG00000002500) #21	DAPK1 (ENSCPOG00000000987) #22	ENSCPOG00000032751	WNT8B (ENSCPOG00000027283)	SEC31B (ENSCPOG00000007432)	NDUFB8 (ENSCPOG00000024799)	HIF1AN (ENSCPOG00000009881)	PAX2 (ENSCPOG00000000939)	SLF2 (ENSCPOG00000000940)	SEMA4G (ENSCPOG00000036564)	MRPL43 (ENSCPOG00000040768)	TWNK (ENSCPOG00000000950)	LZTS2 (ENSCPOG00000035545)	ENSCPOG00000000952	SFXN3 (ENSCPOG00000000955)	KAZALD1 (ENSCPOG00000015270)	TLX1 (ENSCPOG00000003194)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5															ENSHGLG00000031937	DAPK1 (ENSHGLG00000017803) #22	GOLM1 (ENSHGLG00000017786) #18	NAA35 (ENSHGLG00000017763) #17	AGTPBP1 (ENSHGLG00000017732) #16	ENSHGLG00000039492	ENSHGLG00000039873	NTRK2 (ENSHGLG00000017693) #15	SLC28A3 (ENSHGLG00000017777)	ENSHGLG00000033908	RMI1 (ENSHGLG00000048963)	ENSHGLG00000036726	ENSHGLG00000048823	ENSHGLG00000032986	ENSHGLG00000018511	ENSHGLG00000034355	ENSHGLG00000032822
Naked mole-rat female	MODERN SPECIES	22	TFCP2L1 (ENSHGLG00000041072)	GLI2 (ENSHGLG00000004535)	INHBB (ENSHGLG00000009209)	ENSHGLG00000004693	ENSHGLG00000032912	RALB (ENSHGLG00000037096)	TMEM185B (ENSHGLG00000034185)	ENSHGLG00000008402	ENSHGLG00000035501	PTPN4 (ENSHGLG00000008471)	TMEM177 (ENSHGLG00000014801)	ENSHGLG00000012507	CFAP221 (ENSHGLG00000016525)	SCTR (ENSHGLG00000014846)	TMEM37 (ENSHGLG00000015189)	ENSHGLG00000015203 #22	ENSHGLG00000017824	C2orf76 (ENSHGLG00000017852)	STEAP3 (ENSHGLG00000041983)	ENSHGLG00000047186	C1QL2 (ENSHGLG00000005027)	MARCO (ENSHGLG00000007212)	EN1 (ENSHGLG00000008502)	INSIG2 (ENSHGLG00000048151)	ENSHGLG00000016311	ENSHGLG00000042944	DDX18 (ENSHGLG00000016324)	ENSHGLG00000034383	ENSHGLG00000044680	ENSHGLG00000010182	ENSHGLG00000040375