Glires	ANCESTRAL SPECIES	9	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a
Kangaroo rat	MODERN SPECIES	462	Pom121 (ENSDORG00000010532) #7	Nsun5 (ENSDORG00000010530) #8	Trim50 (ENSDORG00000015388) #9	ENSDORG00000015387 #10	Fzd9 (ENSDORG00000012533) #11	Baz1b (ENSDORG00000012540) #12	ENSDORG00000026621 #13	Tbl2 (ENSDORG00000012166) #14	Mlxipl (ENSDORG00000012167) #15	ENSDORG00000024551 #16	ENSDORG00000009046 #17	ENSDORG00000026356 #18	ENSDORG00000028702 #19	Gas1 (ENSDORG00000011479) #20	ENSDORG00000027295 #21	Dapk1 (ENSDORG00000003214) #22
Myomorpha	ANCESTRAL SPECIES	60	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a
Muroidea	ANCESTRAL SPECIES	72	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a	ENSGT00940000153321.b.b.l.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.b.a.b	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.b	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000153434.a.b.a.b	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.a.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390
Northern American deer mouse	MODERN SPECIES	18	2210016F16Rik (ENSPEMG00000018085)	Hnrnpk (ENSPEMG00000012825)	Slc28a3 (ENSPEMG00000016674)	Ntrk2 (ENSPEMG00000000060)	ENSPEMG00000030036	Agtpbp1 (ENSPEMG00000003465)	Naa35 (ENSPEMG00000020283)	Golm1 (ENSPEMG00000021119)	4921517D22Rik (ENSPEMG00000022165)	ENSPEMG00000025782	ENSPEMG00000025105	ENSPEMG00000028848	ENSPEMG00000029941 #16	Tut7 (ENSPEMG00000014030) #17	Gas1 (ENSPEMG00000007789) #20	Dapk1 (ENSPEMG00000022627) #22	BC051665 (ENSPEMG00000025235)	Ctsll3 (ENSPEMG00000029464)	4930486L24Rik (ENSPEMG00000016874)	ENSPEMG00000022155	ENSPEMG00000028441	ENSPEMG00000026019	ENSPEMG00000030527	ENSPEMG00000026470	ENSPEMG00000020375	ENSPEMG00000031098	Ctsj (ENSPEMG00000015113)	ENSPEMG00000026728	ENSPEMG00000029752	Ctsr (ENSPEMG00000001393)	Cts6 (ENSPEMG00000016021)
Prairie vole	MODERN SPECIES	3	Kif27 (ENSMOCG00000015570)	2210016F16Rik (ENSMOCG00000017857)	ENSMOCG00000001446	Rmi1 (ENSMOCG00000016761)	Slc28a3 (ENSMOCG00000005269)	Ntrk2 (ENSMOCG00000015461)	Agtpbp1 (ENSMOCG00000014650)	Naa35 (ENSMOCG00000013999)	ENSMOCG00000019507	4921517D22Rik (ENSMOCG00000022999)	ENSMOCG00000000876	ENSMOCG00000000209 #16	ENSMOCG00000007812 #17	ENSMOCG00000022892 #17	Gas1 (ENSMOCG00000002738) #20	Dapk1 (ENSMOCG00000016789) #22	ENSMOCG00000012620	ENSMOCG00000019948	4930486L24Rik (ENSMOCG00000005874)	Ctsj (ENSMOCG00000013146)	ENSMOCG00000000781	ENSMOCG00000013109	ENSMOCG00000020961	Cts8 (ENSMOCG00000005191)	Cts7 (ENSMOCG00000001845)	ENSMOCG00000010780	Fbp2 (ENSMOCG00000017815)	Fbp1 (ENSMOCG00000014907)	Aopep (ENSMOCG00000003056)	Fancc (ENSMOCG00000001776)	Ptch1 (ENSMOCG00000022943)
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.b.a.b	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.b	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328
Golden Hamster	MODERN SPECIES	699	Idnk (ENSMAUG00000011365)	Ubqln1 (ENSMAUG00000009272)	Gkap1 (ENSMAUG00000009206)	Kif27 (ENSMAUG00000007799)	2210016F16Rik (ENSMAUG00000001833)	ENSMAUG00000015268	Slc28a3 (ENSMAUG00000007466)	Ntrk2 (ENSMAUG00000014898)	ENSMAUG00000002599	Naa35 (ENSMAUG00000006704)	ENSMAUG00000012538	1700014D04Rik (ENSMAUG00000020029)	ENSMAUG00000000645 #16	Tut7 (ENSMAUG00000006963) #17	Gas1 (ENSMAUG00000019435) #20	Dapk1 (ENSMAUG00000000180) #22	BC051665 (ENSMAUG00000012142)	Ctsll3 (ENSMAUG00000014374)	Ctsj (ENSMAUG00000008852)	Cts6 (ENSMAUG00000016662)	Ctsr (ENSMAUG00000014961)	Cts8 (ENSMAUG00000018878)	ENSMAUG00000016362	Fbp2 (ENSMAUG00000017596)	Fbp1 (ENSMAUG00000015819)	Aopep (ENSMAUG00000003279)	Fancc (ENSMAUG00000012407)	Ptch1 (ENSMAUG00000014816)	Ercc6l2 (ENSMAUG00000004820)	Hsd17b3 (ENSMAUG00000018759)	Slc35d2 (ENSMAUG00000016504)
Chinese hamster chok1gshd	MODERN SPECIES	317	2210016F16Rik (ENSCGRG00001010344)	ENSCGRG00001016951	Rmi1 (ENSCGRG00001004591)	Slc28a3 (ENSCGRG00001020206)	ENSCGRG00001012376	ENSCGRG00001013499	Agtpbp1 (ENSCGRG00001021345)	ENSCGRG00001022085	Golm1 (ENSCGRG00001021525)	ENSCGRG00001001460	Spata31d1d (ENSCGRG00001011836)	1700014D04Rik (ENSCGRG00001022165)	ENSCGRG00001007037 #16	Tut7 (ENSCGRG00001020605) #17	Gas1 (ENSCGRG00001010171) #20	Dapk1 (ENSCGRG00001000497) #22	BC051665 (ENSCGRG00001008665)	ENSCGRG00001014152	ENSCGRG00001019274	4930486L24Rik (ENSCGRG00001023066)	ENSCGRG00001024602	ENSCGRG00001015895	Ctsj (ENSCGRG00001024764)	Ctsq (ENSCGRG00001002399)	Cts6 (ENSCGRG00001022925)	Cts8 (ENSCGRG00001013704)	Fbp2 (ENSCGRG00001022515)	Fbp1 (ENSCGRG00001009150)	Aopep (ENSCGRG00001012713)	Fancc (ENSCGRG00001013491)	Ptch1 (ENSCGRG00001010176)
Murinae	ANCESTRAL SPECIES	21	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.a.b.b	ENSGT00950000183043.a.b.b.a.b.u.a.b.a	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b	ENSGT00390000010930	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b.e	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211
Mus	ANCESTRAL SPECIES	18	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.a.b.b	ENSGT00950000183043.a.b.b.a.b.u.a.b.a	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00800000125290	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b	ENSGT00390000010930.a	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b.e	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.a.b.b	ENSGT00950000183043.a.b.b.a.b.u.a.b.a	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00800000125290	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b	ENSGT00390000010930.b	ENSGT00390000010930.a	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b.e	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b	ENSGT00390000015513.a.a.b
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.a.b.b	ENSGT00950000183043.a.b.b.a.b.u.a.b.a	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00800000125290	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.c	ENSGT00390000010930.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.d	ENSGT00390000010930.a	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b.e	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00950000183043.a.b.b.a.b.u.a.b.b	ENSGT00950000183043.a.b.b.a.b.u.a.b.a	ENSGT00950000183043.a.b.b.a.b.u.b	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00800000125290	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b	ENSGT00940000153321.b.b.l.b.a.a.a.a	ENSGT00940000153321.b.b.l.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.c	ENSGT00390000010930.b	ENSGT00940000153321.b.b.l.b.b.b.b.b.d	ENSGT00390000010930.a	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b.e	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b
spretus	MODERN SPECIES	4	Hnrnpk (MGP_SPRETEiJ_G0019479)	Rmi1 (MGP_SPRETEiJ_G0019480)	Slc28a3 (MGP_SPRETEiJ_G0019481)	Ntrk2 (MGP_SPRETEiJ_G0019482)	Agtpbp1 (MGP_SPRETEiJ_G0019483)	Naa35 (MGP_SPRETEiJ_G0019484)	MGP_SPRETEiJ_G0019485	4921517D22Rik (MGP_SPRETEiJ_G0019486)	Spata31d1a (MGP_SPRETEiJ_G0019487)	Spata31d1d (MGP_SPRETEiJ_G0019488)	1700014D04Rik (MGP_SPRETEiJ_G0019489)	MGP_SPRETEiJ_G0019490 #16	Tut7 (MGP_SPRETEiJ_G0019491) #17	Gas1 (MGP_SPRETEiJ_G0019492) #20	MGP_SPRETEiJ_G0019493	Dapk1 (MGP_SPRETEiJ_G0019494) #22	BC051665 (MGP_SPRETEiJ_G0019495)	Ctsll3 (MGP_SPRETEiJ_G0019496)	4930486L24Rik (MGP_SPRETEiJ_G0019497)	Ctla2b (MGP_SPRETEiJ_G0019498)	Tpbpb (MGP_SPRETEiJ_G0019499)	Ctla2a (MGP_SPRETEiJ_G0019500)	MGP_SPRETEiJ_G0019501	Ctsj (MGP_SPRETEiJ_G0019502)	Ctsq (MGP_SPRETEiJ_G0019503)	Ctsr (MGP_SPRETEiJ_G0019504)	Cts6 (MGP_SPRETEiJ_G0019505)	Cts8 (MGP_SPRETEiJ_G0019506)	Cts7 (MGP_SPRETEiJ_G0019507)	Ctsm (MGP_SPRETEiJ_G0019508)	MGP_SPRETEiJ_G0019509
Steppe mouse	MODERN SPECIES	3363	ENSMSIG00000020732	Ntrk2 (ENSMSIG00000020750)	Agtpbp1 (ENSMSIG00000021104)	Naa35 (ENSMSIG00000021291)	Golm1 (ENSMSIG00000021316)	4921517D22Rik (ENSMSIG00000021349)	Spata31d1a (ENSMSIG00000021365)	Spata31d1b (ENSMSIG00000021379)	Spata31d1d (ENSMSIG00000021387)	1700014D04Rik (ENSMSIG00000021396)	ENSMSIG00000021410 #16	Tut7 (ENSMSIG00000021435) #17	Gas1 (ENSMSIG00000021556) #20	ENSMSIG00000021571	ENSMSIG00000021574	Dapk1 (ENSMSIG00000021579) #22	BC051665 (ENSMSIG00000021609)	Ctsll3 (ENSMSIG00000021625)	4930486L24Rik (ENSMSIG00000021647)	Ctla2b (ENSMSIG00000021665)	Tpbpb (ENSMSIG00000021690)	Ctla2a (ENSMSIG00000021719)	Tpbpa (ENSMSIG00000021726)	Ctsj (ENSMSIG00000021739)
Mouse	MODERN SPECIES	4	Hnrnpk (ENSMUSG00000021546)	Rmi1 (ENSMUSG00000035367)	Slc28a3 (ENSMUSG00000021553)	Ntrk2 (ENSMUSG00000055254)	Agtpbp1 (ENSMUSG00000021557)	Naa35 (ENSMUSG00000021555)	Golm1 (ENSMUSG00000021556)	4921517D22Rik (ENSMUSG00000049902)	Spata31d1a (ENSMUSG00000050876)	Spata31d1b (ENSMUSG00000091311)	Spata31d1d (ENSMUSG00000043986)	1700014D04Rik (ENSMUSG00000051054)	Isca1 (ENSMUSG00000044792) #16	Tut7 (ENSMUSG00000035248) #17	Gas1 (ENSMUSG00000052957) #20	Dapk1 (ENSMUSG00000021559) #22	BC051665 (ENSMUSG00000042243)	Ctsll3 (ENSMUSG00000056728)	4930486L24Rik (ENSMUSG00000050345)	Ctla2b (ENSMUSG00000074874)	Gm49391 (ENSMUSG00000114432)	Tpbpb (ENSMUSG00000062705)	Ctla2a (ENSMUSG00000044258)	Tpbpa (ENSMUSG00000033834)	Ctsj (ENSMUSG00000055298)	Ctsq (ENSMUSG00000021439)	Ctsr (ENSMUSG00000055679)	Cts6 (ENSMUSG00000021441)	Cts8 (ENSMUSG00000057446)	Cts7 (ENSMUSG00000021440)	Ctsm (ENSMUSG00000074871)
Ryukyu mouse	MODERN SPECIES	4	Rmi1 (MGP_CAROLIEiJ_G0018600)	Slc28a3 (MGP_CAROLIEiJ_G0018601)	Ntrk2 (MGP_CAROLIEiJ_G0018602)	Agtpbp1 (MGP_CAROLIEiJ_G0018603)	MGP_CAROLIEiJ_G0018604	Golm1 (MGP_CAROLIEiJ_G0018605)	4921517D22Rik (MGP_CAROLIEiJ_G0018606)	MGP_CAROLIEiJ_G0018607	MGP_CAROLIEiJ_G0018608	Spata31d1d (MGP_CAROLIEiJ_G0018609)	1700014D04Rik (MGP_CAROLIEiJ_G0018610)	MGP_CAROLIEiJ_G0018611 #16	Tut7 (MGP_CAROLIEiJ_G0018612) #17	Gas1 (MGP_CAROLIEiJ_G0018613) #20	MGP_CAROLIEiJ_G0018614	Dapk1 (MGP_CAROLIEiJ_G0018615) #22	BC051665 (MGP_CAROLIEiJ_G0018616)	Ctsll3 (MGP_CAROLIEiJ_G0018617)	4930486L24Rik (MGP_CAROLIEiJ_G0018618)	MGP_CAROLIEiJ_G0018619	MGP_CAROLIEiJ_G0018620	Tpbpb (MGP_CAROLIEiJ_G0018621)	MGP_CAROLIEiJ_G0018622	Ctsj (MGP_CAROLIEiJ_G0018623)	Ctsr (MGP_CAROLIEiJ_G0018624)	Cts6 (MGP_CAROLIEiJ_G0018625)	Cts8 (MGP_CAROLIEiJ_G0018626)	Cts7 (MGP_CAROLIEiJ_G0018627)	Ctsm (MGP_CAROLIEiJ_G0018628)	MGP_CAROLIEiJ_G0018629	Fbp2 (MGP_CAROLIEiJ_G0018630)
Shrew mouse	MODERN SPECIES	7	Rmi1 (MGP_PahariEiJ_G0019664)	Slc28a3 (MGP_PahariEiJ_G0019665)	Ntrk2 (MGP_PahariEiJ_G0019666)	Agtpbp1 (MGP_PahariEiJ_G0019667)	Naa35 (MGP_PahariEiJ_G0019668)	Golm1 (MGP_PahariEiJ_G0019669)	4921517D22Rik (MGP_PahariEiJ_G0019670)	MGP_PahariEiJ_G0019671	Spata31d1b (MGP_PahariEiJ_G0019672)	Spata31d1d (MGP_PahariEiJ_G0019673)	1700014D04Rik (MGP_PahariEiJ_G0019674)	MGP_PahariEiJ_G0019675 #16	Tut7 (MGP_PahariEiJ_G0019676) #17	Gas1 (MGP_PahariEiJ_G0019677) #20	MGP_PahariEiJ_G0019678	Dapk1 (MGP_PahariEiJ_G0019679) #22	BC051665 (MGP_PahariEiJ_G0019680)	Ctsll3 (MGP_PahariEiJ_G0019681)	4930486L24Rik (MGP_PahariEiJ_G0019682)	MGP_PahariEiJ_G0019683	MGP_PahariEiJ_G0019684	MGP_PahariEiJ_G0019685	MGP_PahariEiJ_G0019686	Ctsj (MGP_PahariEiJ_G0019687)	Ctsr (MGP_PahariEiJ_G0019688)	Cts6 (MGP_PahariEiJ_G0019689)	Cts8 (MGP_PahariEiJ_G0019690)	Cts7 (MGP_PahariEiJ_G0019691)	MGP_PahariEiJ_G0019692	MGP_PahariEiJ_G0019693	Fbp2 (MGP_PahariEiJ_G0019694)
Rat	MODERN SPECIES	8	Hnrnpk (ENSRNOG00000019113)	Rmi1 (ENSRNOG00000019108)	Slc28a3 (ENSRNOG00000018853)	Ntrk2 (ENSRNOG00000018839)	Agtpbp1 (ENSRNOG00000018651)	ENSRNOG00000064986	Naa35 (ENSRNOG00000018417)	Golm1 (ENSRNOG00000018400)	LOC100912252 (ENSRNOG00000042206)	Spata31d3 (ENSRNOG00000056413)	Spata31d1b (ENSRNOG00000069288)	Spata31d1 (ENSRNOG00000027014)	AABR07026929.1 (ENSRNOG00000042026)	Isca1 (ENSRNOG00000018343) #16	Tut7 (ENSRNOG00000016629) #17	Dapk1 (ENSRNOG00000018198) #22	RGD1308751 (ENSRNOG00000039954)	Ctsll3 (ENSRNOG00000069877)	Testin (ENSRNOG00000018028)	Ctla2a (ENSRNOG00000039971)	Tpbpa (ENSRNOG00000039975)	RGD1564827 (ENSRNOG00000069712)	Ctsj (ENSRNOG00000046476)	Ctsql2 (ENSRNOG00000017946)	LOC100364523 (ENSRNOG00000056519)	Ctsq (ENSRNOG00000048693)	AABR07043347.1 (ENSRNOG00000051410)	MGC114246 (ENSRNOG00000039990)	Ctsr (ENSRNOG00000017888)	Cts8 (ENSRNOG00000040000)	Cts8l1 (ENSRNOG00000065532)
Upper Galilee mountains blind mole rat	MODERN SPECIES	827											ENSNGAG00000022920 #16	ENSNGAG00000022758 #17	ENSNGAG00000021770 #17	ENSNGAG00000012268 #17	ENSNGAG00000016586	Dapk1 (ENSNGAG00000023610) #22	ENSNGAG00000023296	ENSNGAG00000023443	ENSNGAG00000001073	ENSNGAG00000006724	ENSNGAG00000010869	Naa35 (ENSNGAG00000012706)
Lesser Egyptian jerboa	MODERN SPECIES	231									ENSJJAG00000021479	ENSJJAG00000021622 #16	ENSJJAG00000000106 #17	ENSJJAG00000000283 #17	ENSJJAG00000000397 #17	ENSJJAG00000000580	ENSJJAG00000000674	Dapk1 (ENSJJAG00000005305) #22
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374.u	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Marmotini	ANCESTRAL SPECIES	108	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374.u	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Alpin marmot	MODERN SPECIES	68	DNA2 (ENSMMMG00000009618)	RUFY2 (ENSMMMG00000009654)	ENSMMMG00000009862	PBLD (ENSMMMG00000009871)	ATOH7 (ENSMMMG00000010063)	MYPN (ENSMMMG00000010068)	HERC4 (ENSMMMG00000010126)	ENSMMMG00000010229	ENSMMMG00000010250	CTNNA3 (ENSMMMG00000010289)	LRRTM3 (ENSMMMG00000010362)	ENSMMMG00000010382	ENSMMMG00000010389	ENSMMMG00000010403	REEP3 (ENSMMMG00000010412)	DAPK1 (ENSMMMG00000010458) #22	ENSMMMG00000010528
Marmotini_b	ANCESTRAL SPECIES	246								ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b
Arctic ground squirrel	MODERN SPECIES	302										NAA35 (ENSUPAG00010023699)	GOLM1 (ENSUPAG00010023698)	ENSUPAG00010023697	ISCA1 (ENSUPAG00010023696) #16	TUT7 (ENSUPAG00010023694) #17	GAS1 (ENSUPAG00010023687) #20	DAPK1 (ENSUPAG00010023679) #22	ENSUPAG00010023673
Squirrel	MODERN SPECIES	280									NTRK2 (ENSSTOG00000008937)	AGTPBP1 (ENSSTOG00000001961)	NAA35 (ENSSTOG00000015631)	ENSSTOG00000024100	ENSSTOG00000028077	ISCA1 (ENSSTOG00000000582) #16	TUT7 (ENSSTOG00000000586) #17	DAPK1 (ENSSTOG00000015490) #22	ENSSTOG00000015504
Eurasian red squirrel	MODERN SPECIES	6	KIF27 (ENSSVLG00005025080)	ENSSVLG00005025013	HNRNPK (ENSSVLG00005024963)	RMI1 (ENSSVLG00005024865)	ENSSVLG00005024855	ENSSVLG00005024836	SLC28A3 (ENSSVLG00005024780)	NTRK2 (ENSSVLG00005024628)	AGTPBP1 (ENSSVLG00005024487)	NAA35 (ENSSVLG00005024431)	GOLM1 (ENSSVLG00005024384)	ENSSVLG00005024339	ISCA1 (ENSSVLG00005024297) #16	TUT7 (ENSSVLG00005024220) #17	GAS1 (ENSSVLG00005024195) #20	DAPK1 (ENSSVLG00005024152) #22	ENSSVLG00005024080	ENSSVLG00005024060
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00940000153424.a.b #22
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000164141	ENSGT00490000043385 #16	ENSGT00940000156859 #17	ENSGT00940000153424.a.b #22
Long-tailed chinchilla	MODERN SPECIES	139	C9orf64 (ENSCLAG00000002920)	HNRNPK (ENSCLAG00000005883)	RMI1 (ENSCLAG00000017662)	SLC28A3 (ENSCLAG00000005357)	ENSCLAG00000005146	NTRK2 (ENSCLAG00000004746)	ENSCLAG00000004540	AGTPBP1 (ENSCLAG00000009351)	NAA35 (ENSCLAG00000008861)	GOLM1 (ENSCLAG00000008736)	ENSCLAG00000008692	ENSCLAG00000007775 #16	TUT7 (ENSCLAG00000007535) #17	ENSCLAG00000007415	ENSCLAG00000007321	DAPK1 (ENSCLAG00000006636) #22
Degu	MODERN SPECIES	152	HNRNPK (ENSODEG00000005637)	RMI1 (ENSODEG00000004954)	ENSODEG00000006844	SLC28A3 (ENSODEG00000004732)	NTRK2 (ENSODEG00000005490)	ENSODEG00000005328	AGTPBP1 (ENSODEG00000005635)	NAA35 (ENSODEG00000005083)	ENSODEG00000005810	ENSODEG00000019211	ENSODEG00000005480 #16	ENSODEG00000006904 #17	ENSODEG00000006376 #17	ENSODEG00000004592 #17	ENSODEG00000005716	DAPK1 (ENSODEG00000005070) #22	ENSODEG00000005255	ATP12A (ENSODEG00000005612)	ENSODEG00000005443	CENPJ (ENSODEG00000004803)	ENSODEG00000004571	ENSODEG00000005412	ENSODEG00000007817	ENSODEG00000007655	ENSODEG00000007331	ENSODEG00000019072	ZMYM2 (ENSODEG00000004718)	GJB2 (ENSODEG00000019286)	GJB6 (ENSODEG00000019244)	ENSODEG00000005772	CRYL1 (ENSODEG00000005341)
Guinea pig	MODERN SPECIES	11	UBQLN1 (ENSCPOG00000004849)	ENSCPOG00000023953	GKAP1 (ENSCPOG00000034577)	ENSCPOG00000020823	KIF27 (ENSCPOG00000002485)	C9orf64 (ENSCPOG00000001990)	ENSCPOG00000005024	RMI1 (ENSCPOG00000010177)	SLC28A3 (ENSCPOG00000013188)	NTRK2 (ENSCPOG00000032833)	AGTPBP1 (ENSCPOG00000019771)	NAA35 (ENSCPOG00000032357)	GOLM1 (ENSCPOG00000003829)	ENSCPOG00000032645 #16	TUT7 (ENSCPOG00000002500) #17	DAPK1 (ENSCPOG00000000987) #22	ENSCPOG00000032751	WNT8B (ENSCPOG00000027283)	SEC31B (ENSCPOG00000007432)	NDUFB8 (ENSCPOG00000024799)	HIF1AN (ENSCPOG00000009881)	PAX2 (ENSCPOG00000000939)	SLF2 (ENSCPOG00000000940)	SEMA4G (ENSCPOG00000036564)	MRPL43 (ENSCPOG00000040768)	TWNK (ENSCPOG00000000950)	LZTS2 (ENSCPOG00000035545)	ENSCPOG00000000952	SFXN3 (ENSCPOG00000000955)	KAZALD1 (ENSCPOG00000015270)	TLX1 (ENSCPOG00000003194)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5															ENSHGLG00000031937 #20	DAPK1 (ENSHGLG00000017803) #22	GOLM1 (ENSHGLG00000017786)	NAA35 (ENSHGLG00000017763)	AGTPBP1 (ENSHGLG00000017732)	ENSHGLG00000039492	ENSHGLG00000039873	NTRK2 (ENSHGLG00000017693)	SLC28A3 (ENSHGLG00000017777)	ENSHGLG00000033908	RMI1 (ENSHGLG00000048963)	ENSHGLG00000036726	ENSHGLG00000048823	ENSHGLG00000032986	ENSHGLG00000018511	ENSHGLG00000034355	ENSHGLG00000032822
Naked mole-rat female	MODERN SPECIES	22	TFCP2L1 (ENSHGLG00000041072)	GLI2 (ENSHGLG00000004535)	INHBB (ENSHGLG00000009209)	ENSHGLG00000004693	ENSHGLG00000032912	RALB (ENSHGLG00000037096)	TMEM185B (ENSHGLG00000034185)	ENSHGLG00000008402	ENSHGLG00000035501	PTPN4 (ENSHGLG00000008471)	TMEM177 (ENSHGLG00000014801)	ENSHGLG00000012507	CFAP221 (ENSHGLG00000016525)	SCTR (ENSHGLG00000014846)	TMEM37 (ENSHGLG00000015189)	ENSHGLG00000015203 #22	ENSHGLG00000017824	C2orf76 (ENSHGLG00000017852)	STEAP3 (ENSHGLG00000041983)	ENSHGLG00000047186	C1QL2 (ENSHGLG00000005027)	MARCO (ENSHGLG00000007212)	EN1 (ENSHGLG00000008502)	INSIG2 (ENSHGLG00000048151)	ENSHGLG00000016311	ENSHGLG00000042944	DDX18 (ENSHGLG00000016324)	ENSHGLG00000034383	ENSHGLG00000044680	ENSHGLG00000010182	ENSHGLG00000040375
Lagomorpha	ANCESTRAL SPECIES	150													ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00940000156859 #17	ENSGT00940000153424.a.b #22	ENSGT00940000154367.b.f.b	ENSGT00940000154367.b.f.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363
Rabbit	MODERN SPECIES		FGD3 (ENSOCUG00000015829)	ENSOCUG00000037177	FAM120A (ENSOCUG00000010598)	PHF2 (ENSOCUG00000011530)	BARX1 (ENSOCUG00000006551)	PTPDC1 (ENSOCUG00000000256)	ENSOCUG00000033944	ENSOCUG00000034725	ENSOCUG00000026137	ENSOCUG00000033846	ENSOCUG00000026720	ENSOCUG00000022253	NAA35 (ENSOCUG00000001990)	GOLM1 (ENSOCUG00000001999)	TUT7 (ENSOCUG00000010949) #17	DAPK1 (ENSOCUG00000003518) #22	ENSOCUG00000017008	ENSOCUG00000017854	ENSOCUG00000029172	FBP1 (ENSOCUG00000029295)	AOPEP (ENSOCUG00000000678)	FANCC (ENSOCUG00000010476)	PTCH1 (ENSOCUG00000002973)	ENSOCUG00000008778	ENSOCUG00000000442	ENSOCUG00000023971	HSD17B3 (ENSOCUG00000008531)	SLC35D2 (ENSOCUG00000008540)	ENSOCUG00000023077	ENSOCUG00000005332	PRXL2C (ENSOCUG00000013208)
Pika	MODERN SPECIES	4343																ENSOPRG00000008183 #22	ENSOPRG00000008222