Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363
Glires	ANCESTRAL SPECIES	9	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a
Myomorpha	ANCESTRAL SPECIES	60	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a
Muroidea	ANCESTRAL SPECIES	72	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a #25	ENSGT00940000153321.b.b.l.b.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b #27	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b #34	ENSGT00940000153321.b.b.l.b.b.a.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390
Murinae	ANCESTRAL SPECIES	21	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.a.b.b #14	ENSGT00950000183043.a.b.b.a.b.u.a.b.a #15	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b #27	ENSGT00390000010930 #29	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b.b #34	ENSGT00940000153321.b.b.l.b.b.a.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211
Mus	ANCESTRAL SPECIES	18	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.a.b.b #14	ENSGT00950000183043.a.b.b.a.b.u.a.b.a #15	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00800000125290 #21	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b #27	ENSGT00390000010930.a #29	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b.b #34	ENSGT00940000153321.b.b.l.b.b.a.b.a #35	ENSGT00940000153321.b.b.l.b.b.a.b.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37
Shrew mouse	MODERN SPECIES	7	Rmi1 (MGP_PahariEiJ_G0019664) #7	Slc28a3 (MGP_PahariEiJ_G0019665) #8	Ntrk2 (MGP_PahariEiJ_G0019666) #9	Agtpbp1 (MGP_PahariEiJ_G0019667) #10	Naa35 (MGP_PahariEiJ_G0019668) #11	Golm1 (MGP_PahariEiJ_G0019669) #12	4921517D22Rik (MGP_PahariEiJ_G0019670) #13	MGP_PahariEiJ_G0019671 #14	Spata31d1b (MGP_PahariEiJ_G0019672) #15	Spata31d1d (MGP_PahariEiJ_G0019673) #16	1700014D04Rik (MGP_PahariEiJ_G0019674) #17	MGP_PahariEiJ_G0019675 #18	Tut7 (MGP_PahariEiJ_G0019676) #19	Gas1 (MGP_PahariEiJ_G0019677) #20	MGP_PahariEiJ_G0019678 #21	Dapk1 (MGP_PahariEiJ_G0019679) #22	BC051665 (MGP_PahariEiJ_G0019680) #23	Ctsll3 (MGP_PahariEiJ_G0019681) #24	4930486L24Rik (MGP_PahariEiJ_G0019682) #25	MGP_PahariEiJ_G0019683 #26	MGP_PahariEiJ_G0019684 #27	MGP_PahariEiJ_G0019685 #28	MGP_PahariEiJ_G0019686 #29	Ctsj (MGP_PahariEiJ_G0019687) #30	Ctsr (MGP_PahariEiJ_G0019688) #31	Cts6 (MGP_PahariEiJ_G0019689) #32	Cts8 (MGP_PahariEiJ_G0019690) #33	Cts7 (MGP_PahariEiJ_G0019691) #34	MGP_PahariEiJ_G0019692 #35	MGP_PahariEiJ_G0019693 #36	Fbp2 (MGP_PahariEiJ_G0019694) #37
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.a.b.b #14	ENSGT00950000183043.a.b.b.a.b.u.a.b.a #15	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00800000125290 #21	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b #27	ENSGT00390000010930.b ##29	ENSGT00390000010930.a #29	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b.b #34	ENSGT00940000153321.b.b.l.b.b.a.b.a #35	ENSGT00940000153321.b.b.l.b.b.a.b.b #36	ENSGT00390000015513.a.a.b #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.a.b.b #14	ENSGT00950000183043.a.b.b.a.b.u.a.b.a #15	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00800000125290 #21	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b.c #27	ENSGT00390000010930.b ##29	ENSGT00940000153321.b.b.l.b.b.b.b.b.d #27	ENSGT00390000010930.a #29	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b.b #34	ENSGT00940000153321.b.b.l.b.b.a.b.a #35	ENSGT00940000153321.b.b.l.b.b.a.b.b #36
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.a.b.b #14	ENSGT00950000183043.a.b.b.a.b.u.a.b.a #15	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00800000125290 #21	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b.c #27	ENSGT00390000010930.b ##29	ENSGT00940000153321.b.b.l.b.b.b.b.b.d #27	ENSGT00390000010930.a #29	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b.b #34	ENSGT00940000153321.b.b.l.b.b.a.b.a #35	ENSGT00940000153321.b.b.l.b.b.a.b.b #36
spretus	MODERN SPECIES	4	Hnrnpk (MGP_SPRETEiJ_G0019479)	Rmi1 (MGP_SPRETEiJ_G0019480) #7	Slc28a3 (MGP_SPRETEiJ_G0019481) #8	Ntrk2 (MGP_SPRETEiJ_G0019482) #9	Agtpbp1 (MGP_SPRETEiJ_G0019483) #10	Naa35 (MGP_SPRETEiJ_G0019484) #11	MGP_SPRETEiJ_G0019485 #12	4921517D22Rik (MGP_SPRETEiJ_G0019486) #13	Spata31d1a (MGP_SPRETEiJ_G0019487) #14	Spata31d1d (MGP_SPRETEiJ_G0019488) #16	1700014D04Rik (MGP_SPRETEiJ_G0019489) #17	MGP_SPRETEiJ_G0019490 #18	Tut7 (MGP_SPRETEiJ_G0019491) #19	Gas1 (MGP_SPRETEiJ_G0019492) #20	MGP_SPRETEiJ_G0019493 #21	Dapk1 (MGP_SPRETEiJ_G0019494) #22	BC051665 (MGP_SPRETEiJ_G0019495) #23	Ctsll3 (MGP_SPRETEiJ_G0019496) #24	4930486L24Rik (MGP_SPRETEiJ_G0019497) #25	Ctla2b (MGP_SPRETEiJ_G0019498) #27	Tpbpb (MGP_SPRETEiJ_G0019499) ##29	Ctla2a (MGP_SPRETEiJ_G0019500) #27	MGP_SPRETEiJ_G0019501 #29	Ctsj (MGP_SPRETEiJ_G0019502) #30	Ctsq (MGP_SPRETEiJ_G0019503) ##36	Ctsr (MGP_SPRETEiJ_G0019504) #31	Cts6 (MGP_SPRETEiJ_G0019505) #32	Cts8 (MGP_SPRETEiJ_G0019506) #33	Cts7 (MGP_SPRETEiJ_G0019507) #34	Ctsm (MGP_SPRETEiJ_G0019508) #35	MGP_SPRETEiJ_G0019509 #36
Steppe mouse	MODERN SPECIES	3363	ENSMSIG00000020732	Ntrk2 (ENSMSIG00000020750) #9	Agtpbp1 (ENSMSIG00000021104) #10	Naa35 (ENSMSIG00000021291) #11	Golm1 (ENSMSIG00000021316) #12	4921517D22Rik (ENSMSIG00000021349) #13	Spata31d1a (ENSMSIG00000021365) #14	Spata31d1b (ENSMSIG00000021379) #15	Spata31d1d (ENSMSIG00000021387) #16	1700014D04Rik (ENSMSIG00000021396) #17	ENSMSIG00000021410 #18	Tut7 (ENSMSIG00000021435) #19	Gas1 (ENSMSIG00000021556) #20	ENSMSIG00000021571 #21	ENSMSIG00000021574	Dapk1 (ENSMSIG00000021579) #22	BC051665 (ENSMSIG00000021609) #23	Ctsll3 (ENSMSIG00000021625) #24	4930486L24Rik (ENSMSIG00000021647) #25	Ctla2b (ENSMSIG00000021665) #27	Tpbpb (ENSMSIG00000021690) ##29	Ctla2a (ENSMSIG00000021719) #27	Tpbpa (ENSMSIG00000021726) #29	Ctsj (ENSMSIG00000021739) #30
Mouse	MODERN SPECIES	4	Hnrnpk (ENSMUSG00000021546)	Rmi1 (ENSMUSG00000035367) #7	Slc28a3 (ENSMUSG00000021553) #8	Ntrk2 (ENSMUSG00000055254) #9	Agtpbp1 (ENSMUSG00000021557) #10	Naa35 (ENSMUSG00000021555) #11	Golm1 (ENSMUSG00000021556) #12	4921517D22Rik (ENSMUSG00000049902) #13	Spata31d1a (ENSMUSG00000050876) #14	Spata31d1b (ENSMUSG00000091311) #15	Spata31d1d (ENSMUSG00000043986) #16	1700014D04Rik (ENSMUSG00000051054) #17	Isca1 (ENSMUSG00000044792) #18	Tut7 (ENSMUSG00000035248) #19	Gas1 (ENSMUSG00000052957) #20	Dapk1 (ENSMUSG00000021559) #22	BC051665 (ENSMUSG00000042243) #23	Ctsll3 (ENSMUSG00000056728) #24	4930486L24Rik (ENSMUSG00000050345) #25	Ctla2b (ENSMUSG00000074874) #27	Gm49391 (ENSMUSG00000114432)	Tpbpb (ENSMUSG00000062705) ##29	Ctla2a (ENSMUSG00000044258) #27	Tpbpa (ENSMUSG00000033834) #29	Ctsj (ENSMUSG00000055298) #30	Ctsq (ENSMUSG00000021439) ##36	Ctsr (ENSMUSG00000055679) #31	Cts6 (ENSMUSG00000021441) #32	Cts8 (ENSMUSG00000057446) #33	Cts7 (ENSMUSG00000021440) #34	Ctsm (ENSMUSG00000074871) #35
Ryukyu mouse	MODERN SPECIES	4	Rmi1 (MGP_CAROLIEiJ_G0018600) #7	Slc28a3 (MGP_CAROLIEiJ_G0018601) #8	Ntrk2 (MGP_CAROLIEiJ_G0018602) #9	Agtpbp1 (MGP_CAROLIEiJ_G0018603) #10	MGP_CAROLIEiJ_G0018604 #11	Golm1 (MGP_CAROLIEiJ_G0018605) #12	4921517D22Rik (MGP_CAROLIEiJ_G0018606) #13	MGP_CAROLIEiJ_G0018607 #14	MGP_CAROLIEiJ_G0018608 #15	Spata31d1d (MGP_CAROLIEiJ_G0018609) #16	1700014D04Rik (MGP_CAROLIEiJ_G0018610) #17	MGP_CAROLIEiJ_G0018611 #18	Tut7 (MGP_CAROLIEiJ_G0018612) #19	Gas1 (MGP_CAROLIEiJ_G0018613) #20	MGP_CAROLIEiJ_G0018614 #21	Dapk1 (MGP_CAROLIEiJ_G0018615) #22	BC051665 (MGP_CAROLIEiJ_G0018616) #23	Ctsll3 (MGP_CAROLIEiJ_G0018617) #24	4930486L24Rik (MGP_CAROLIEiJ_G0018618) #25	MGP_CAROLIEiJ_G0018619 #27	MGP_CAROLIEiJ_G0018620 #27	Tpbpb (MGP_CAROLIEiJ_G0018621) ##29	MGP_CAROLIEiJ_G0018622 #29	Ctsj (MGP_CAROLIEiJ_G0018623) #30	Ctsr (MGP_CAROLIEiJ_G0018624) #31	Cts6 (MGP_CAROLIEiJ_G0018625) #32	Cts8 (MGP_CAROLIEiJ_G0018626) #33	Cts7 (MGP_CAROLIEiJ_G0018627) #34	Ctsm (MGP_CAROLIEiJ_G0018628) #35	MGP_CAROLIEiJ_G0018629 #36	Fbp2 (MGP_CAROLIEiJ_G0018630) #37
Rat	MODERN SPECIES	8	Hnrnpk (ENSRNOG00000019113)	Rmi1 (ENSRNOG00000019108) #7	Slc28a3 (ENSRNOG00000018853) #8	Ntrk2 (ENSRNOG00000018839) #9	Agtpbp1 (ENSRNOG00000018651) #10	ENSRNOG00000064986	Naa35 (ENSRNOG00000018417) #11	Golm1 (ENSRNOG00000018400) #12	LOC100912252 (ENSRNOG00000042206) #13	Spata31d3 (ENSRNOG00000056413) #14	Spata31d1b (ENSRNOG00000069288) #15	Spata31d1 (ENSRNOG00000027014) #16	AABR07026929.1 (ENSRNOG00000042026) #17	Isca1 (ENSRNOG00000018343) #18	Tut7 (ENSRNOG00000016629) #19	Dapk1 (ENSRNOG00000018198) #22	RGD1308751 (ENSRNOG00000039954) #23	Ctsll3 (ENSRNOG00000069877) #24	Testin (ENSRNOG00000018028) #25	Ctla2a (ENSRNOG00000039971) #27	Tpbpa (ENSRNOG00000039975) #29	RGD1564827 (ENSRNOG00000069712) #36	Ctsj (ENSRNOG00000046476) #30	Ctsql2 (ENSRNOG00000017946) ##36	LOC100364523 (ENSRNOG00000056519) ##36	Ctsq (ENSRNOG00000048693) ##36	AABR07043347.1 (ENSRNOG00000051410)	MGC114246 (ENSRNOG00000039990) #31	Ctsr (ENSRNOG00000017888) #32	Cts8 (ENSRNOG00000040000) #33	Cts8l1 (ENSRNOG00000065532) #33
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.b.a.b	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b.b #27	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b #34	ENSGT00940000153321.b.b.l.b.b.a.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000153434.a.b.a.b	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.a.b #15	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b.a #27	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.a #31	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b #34	ENSGT00940000153321.b.b.l.b.b.a.b #36	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390
Northern American deer mouse	MODERN SPECIES	18	2210016F16Rik (ENSPEMG00000018085)	Hnrnpk (ENSPEMG00000012825)	Slc28a3 (ENSPEMG00000016674) #8	Ntrk2 (ENSPEMG00000000060) #9	ENSPEMG00000030036	Agtpbp1 (ENSPEMG00000003465) #10	Naa35 (ENSPEMG00000020283) #11	Golm1 (ENSPEMG00000021119) #12	4921517D22Rik (ENSPEMG00000022165) #13	ENSPEMG00000025782 #15	ENSPEMG00000025105 ##17	ENSPEMG00000028848 #17	ENSPEMG00000029941 #18	Tut7 (ENSPEMG00000014030) #19	Gas1 (ENSPEMG00000007789) #20	Dapk1 (ENSPEMG00000022627) #22	BC051665 (ENSPEMG00000025235) #23	Ctsll3 (ENSPEMG00000029464) #24	4930486L24Rik (ENSPEMG00000016874) #25	ENSPEMG00000022155 #27	ENSPEMG00000028441 #27	ENSPEMG00000026019 #27	ENSPEMG00000030527 #27	ENSPEMG00000026470	ENSPEMG00000020375 #29	ENSPEMG00000031098	Ctsj (ENSPEMG00000015113) #30	ENSPEMG00000026728 ##36	ENSPEMG00000029752 ##36	Ctsr (ENSPEMG00000001393) #31	Cts6 (ENSPEMG00000016021) #32
Prairie vole	MODERN SPECIES	3	Kif27 (ENSMOCG00000015570)	2210016F16Rik (ENSMOCG00000017857)	ENSMOCG00000001446	Rmi1 (ENSMOCG00000016761) #7	Slc28a3 (ENSMOCG00000005269) #8	Ntrk2 (ENSMOCG00000015461) #9	Agtpbp1 (ENSMOCG00000014650) #10	Naa35 (ENSMOCG00000013999) #11	ENSMOCG00000019507 #12	4921517D22Rik (ENSMOCG00000022999) #13	ENSMOCG00000000876 #15	ENSMOCG00000000209 #18	ENSMOCG00000007812 #19	ENSMOCG00000022892 #19	Gas1 (ENSMOCG00000002738) #20	Dapk1 (ENSMOCG00000016789) #22	ENSMOCG00000012620 #23	ENSMOCG00000019948 #23	4930486L24Rik (ENSMOCG00000005874) #25	Ctsj (ENSMOCG00000013146) #30	ENSMOCG00000000781 ##36	ENSMOCG00000013109 ##36	ENSMOCG00000020961 ##36	Cts8 (ENSMOCG00000005191) #33	Cts7 (ENSMOCG00000001845) #34	ENSMOCG00000010780 #36	Fbp2 (ENSMOCG00000017815) #37	Fbp1 (ENSMOCG00000014907) ##37	Aopep (ENSMOCG00000003056)	Fancc (ENSMOCG00000001776)	Ptch1 (ENSMOCG00000022943)
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.b.a.b	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00950000183043.a.b.b.a.b.u.b #16	ENSGT00950000183043.a.b.b.a.a.a.b #17	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b.a.a.a.b #23	ENSGT00940000153321.b.b.l.b.a.a.a.a #24	ENSGT00940000153321.b.b.l.b.a.b #25	ENSGT00940000153321.b.b.l.b.b.b.b.b.b #27	ENSGT00940000153321.b.b.l.b.b.b.b.a #30	ENSGT00940000153321.b.b.l.b.b.b.a.b ##36	ENSGT00940000153321.b.b.l.b.b.b.a.a.b #32	ENSGT00940000153321.b.b.l.b.b.a.a.a #33	ENSGT00940000153321.b.b.l.b.b.a.a.b #34	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328
Golden Hamster	MODERN SPECIES	699	Idnk (ENSMAUG00000011365)	Ubqln1 (ENSMAUG00000009272)	Gkap1 (ENSMAUG00000009206)	Kif27 (ENSMAUG00000007799)	2210016F16Rik (ENSMAUG00000001833)	ENSMAUG00000015268	Slc28a3 (ENSMAUG00000007466) #8	Ntrk2 (ENSMAUG00000014898) #9	ENSMAUG00000002599	Naa35 (ENSMAUG00000006704) #11	ENSMAUG00000012538 #12	1700014D04Rik (ENSMAUG00000020029) #17	ENSMAUG00000000645 #18	Tut7 (ENSMAUG00000006963) #19	Gas1 (ENSMAUG00000019435) #20	Dapk1 (ENSMAUG00000000180) #22	BC051665 (ENSMAUG00000012142) #23	Ctsll3 (ENSMAUG00000014374) #24	Ctsj (ENSMAUG00000008852) #30	Cts6 (ENSMAUG00000016662) #32	Ctsr (ENSMAUG00000014961) #31	Cts8 (ENSMAUG00000018878) #33	ENSMAUG00000016362 #34	Fbp2 (ENSMAUG00000017596) #37	Fbp1 (ENSMAUG00000015819) ##37	Aopep (ENSMAUG00000003279)	Fancc (ENSMAUG00000012407)	Ptch1 (ENSMAUG00000014816)	Ercc6l2 (ENSMAUG00000004820)	Hsd17b3 (ENSMAUG00000018759)	Slc35d2 (ENSMAUG00000016504)
Chinese hamster chok1gshd	MODERN SPECIES	317	2210016F16Rik (ENSCGRG00001010344)	ENSCGRG00001016951	Rmi1 (ENSCGRG00001004591) #7	Slc28a3 (ENSCGRG00001020206) #8	ENSCGRG00001012376 #9	ENSCGRG00001013499 #9	Agtpbp1 (ENSCGRG00001021345) #10	ENSCGRG00001022085 #11	Golm1 (ENSCGRG00001021525) #12	ENSCGRG00001001460 #13	Spata31d1d (ENSCGRG00001011836) #16	1700014D04Rik (ENSCGRG00001022165) #17	ENSCGRG00001007037 #18	Tut7 (ENSCGRG00001020605) #19	Gas1 (ENSCGRG00001010171) #20	Dapk1 (ENSCGRG00001000497) #22	BC051665 (ENSCGRG00001008665) #23	ENSCGRG00001014152 ##36	ENSCGRG00001019274 ##36	4930486L24Rik (ENSCGRG00001023066) #25	ENSCGRG00001024602 #27	ENSCGRG00001015895 #27	Ctsj (ENSCGRG00001024764) #30	Ctsq (ENSCGRG00001002399) ##36	Cts6 (ENSCGRG00001022925) #32	Cts8 (ENSCGRG00001013704) #33	Fbp2 (ENSCGRG00001022515) #37	Fbp1 (ENSCGRG00001009150) ##37	Aopep (ENSCGRG00001012713)	Fancc (ENSCGRG00001013491)	Ptch1 (ENSCGRG00001010176)
Upper Galilee mountains blind mole rat	MODERN SPECIES	827											ENSNGAG00000022920 #18	ENSNGAG00000022758 #19	ENSNGAG00000021770 #19	ENSNGAG00000012268 #19	ENSNGAG00000016586	Dapk1 (ENSNGAG00000023610) #22	ENSNGAG00000023296 #25	ENSNGAG00000023443 #25	ENSNGAG00000001073 #36	ENSNGAG00000006724 #36	ENSNGAG00000010869 #12	Naa35 (ENSNGAG00000012706) #11
Lesser Egyptian jerboa	MODERN SPECIES	231									ENSJJAG00000021479	ENSJJAG00000021622 #18	ENSJJAG00000000106 #19	ENSJJAG00000000283 #19	ENSJJAG00000000397 #19	ENSJJAG00000000580	ENSJJAG00000000674	Dapk1 (ENSJJAG00000005305) #22
Kangaroo rat	MODERN SPECIES	462	Pom121 (ENSDORG00000010532)	Nsun5 (ENSDORG00000010530)	Trim50 (ENSDORG00000015388)	ENSDORG00000015387	Fzd9 (ENSDORG00000012533)	Baz1b (ENSDORG00000012540)	ENSDORG00000026621	Tbl2 (ENSDORG00000012166)	Mlxipl (ENSDORG00000012167)	ENSDORG00000024551 #18	ENSDORG00000009046 #19	ENSDORG00000026356 #19	ENSDORG00000028702 #19	Gas1 (ENSDORG00000011479) #20	ENSDORG00000027295	Dapk1 (ENSDORG00000003214) #22
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374.u	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36
Marmotini	ANCESTRAL SPECIES	108	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374.u	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36
Alpin marmot	MODERN SPECIES	68	DNA2 (ENSMMMG00000009618)	RUFY2 (ENSMMMG00000009654)	ENSMMMG00000009862	PBLD (ENSMMMG00000009871)	ATOH7 (ENSMMMG00000010063)	MYPN (ENSMMMG00000010068)	HERC4 (ENSMMMG00000010126)	ENSMMMG00000010229	ENSMMMG00000010250	CTNNA3 (ENSMMMG00000010289)	LRRTM3 (ENSMMMG00000010362)	ENSMMMG00000010382	ENSMMMG00000010389	ENSMMMG00000010403	REEP3 (ENSMMMG00000010412)	DAPK1 (ENSMMMG00000010458) #22	ENSMMMG00000010528 #36
Marmotini_b	ANCESTRAL SPECIES	246								ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22	ENSGT00940000153321.b.b.l.b #36
Arctic ground squirrel	MODERN SPECIES	302										NAA35 (ENSUPAG00010023699) #11	GOLM1 (ENSUPAG00010023698) #12	ENSUPAG00010023697 #13	ISCA1 (ENSUPAG00010023696) #18	TUT7 (ENSUPAG00010023694) #19	GAS1 (ENSUPAG00010023687) #20	DAPK1 (ENSUPAG00010023679) #22	ENSUPAG00010023673 #36
Squirrel	MODERN SPECIES	280									NTRK2 (ENSSTOG00000008937) #9	AGTPBP1 (ENSSTOG00000001961) #10	NAA35 (ENSSTOG00000015631) #11	ENSSTOG00000024100 #12	ENSSTOG00000028077	ISCA1 (ENSSTOG00000000582) #18	TUT7 (ENSSTOG00000000586) #19	DAPK1 (ENSSTOG00000015490) #22	ENSSTOG00000015504
Eurasian red squirrel	MODERN SPECIES	6	KIF27 (ENSSVLG00005025080)	ENSSVLG00005025013	HNRNPK (ENSSVLG00005024963)	RMI1 (ENSSVLG00005024865) #7	ENSSVLG00005024855	ENSSVLG00005024836	SLC28A3 (ENSSVLG00005024780) #8	NTRK2 (ENSSVLG00005024628) #9	AGTPBP1 (ENSSVLG00005024487) #10	NAA35 (ENSSVLG00005024431) #11	GOLM1 (ENSSVLG00005024384) #12	ENSSVLG00005024339 #13	ISCA1 (ENSSVLG00005024297) #18	TUT7 (ENSSVLG00005024220) #19	GAS1 (ENSSVLG00005024195) #20	DAPK1 (ENSSVLG00005024152) #22	ENSSVLG00005024080	ENSSVLG00005024060
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00390000001195.a #20	ENSGT00940000153424.a.b #22
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00940000153424.a.b #22
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.a.a	ENSGT00940000161055 #7	ENSGT00390000016025.a #8	ENSGT00940000155181 #9	ENSGT00940000157707 #10	ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000164141 #13	ENSGT00490000043385 #18	ENSGT00940000156859 #19	ENSGT00940000153424.a.b #22
Long-tailed chinchilla	MODERN SPECIES	139	C9orf64 (ENSCLAG00000002920)	HNRNPK (ENSCLAG00000005883)	RMI1 (ENSCLAG00000017662) #7	SLC28A3 (ENSCLAG00000005357) #8	ENSCLAG00000005146	NTRK2 (ENSCLAG00000004746) #9	ENSCLAG00000004540	AGTPBP1 (ENSCLAG00000009351) #10	NAA35 (ENSCLAG00000008861) #11	GOLM1 (ENSCLAG00000008736) #12	ENSCLAG00000008692 #13	ENSCLAG00000007775 #18	TUT7 (ENSCLAG00000007535) #19	ENSCLAG00000007415	ENSCLAG00000007321	DAPK1 (ENSCLAG00000006636) #22
Degu	MODERN SPECIES	152	HNRNPK (ENSODEG00000005637)	RMI1 (ENSODEG00000004954) #7	ENSODEG00000006844	SLC28A3 (ENSODEG00000004732) #8	NTRK2 (ENSODEG00000005490) #9	ENSODEG00000005328	AGTPBP1 (ENSODEG00000005635) #10	NAA35 (ENSODEG00000005083) #11	ENSODEG00000005810 #12	ENSODEG00000019211	ENSODEG00000005480 #18	ENSODEG00000006904 #19	ENSODEG00000006376 #19	ENSODEG00000004592 #19	ENSODEG00000005716	DAPK1 (ENSODEG00000005070) #22	ENSODEG00000005255	ATP12A (ENSODEG00000005612)	ENSODEG00000005443	CENPJ (ENSODEG00000004803)	ENSODEG00000004571	ENSODEG00000005412	ENSODEG00000007817	ENSODEG00000007655	ENSODEG00000007331	ENSODEG00000019072	ZMYM2 (ENSODEG00000004718)	GJB2 (ENSODEG00000019286)	GJB6 (ENSODEG00000019244)	ENSODEG00000005772	CRYL1 (ENSODEG00000005341)
Guinea pig	MODERN SPECIES	11	UBQLN1 (ENSCPOG00000004849)	ENSCPOG00000023953	GKAP1 (ENSCPOG00000034577)	ENSCPOG00000020823	KIF27 (ENSCPOG00000002485)	C9orf64 (ENSCPOG00000001990)	ENSCPOG00000005024	RMI1 (ENSCPOG00000010177) #7	SLC28A3 (ENSCPOG00000013188) #8	NTRK2 (ENSCPOG00000032833) #9	AGTPBP1 (ENSCPOG00000019771) #10	NAA35 (ENSCPOG00000032357) #11	GOLM1 (ENSCPOG00000003829) #12	ENSCPOG00000032645 #18	TUT7 (ENSCPOG00000002500) #19	DAPK1 (ENSCPOG00000000987) #22	ENSCPOG00000032751	WNT8B (ENSCPOG00000027283)	SEC31B (ENSCPOG00000007432)	NDUFB8 (ENSCPOG00000024799)	HIF1AN (ENSCPOG00000009881)	PAX2 (ENSCPOG00000000939)	SLF2 (ENSCPOG00000000940)	SEMA4G (ENSCPOG00000036564)	MRPL43 (ENSCPOG00000040768)	TWNK (ENSCPOG00000000950)	LZTS2 (ENSCPOG00000035545)	ENSCPOG00000000952	SFXN3 (ENSCPOG00000000955)	KAZALD1 (ENSCPOG00000015270)	TLX1 (ENSCPOG00000003194)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5															ENSHGLG00000031937 #20	DAPK1 (ENSHGLG00000017803) #22	GOLM1 (ENSHGLG00000017786) #12	NAA35 (ENSHGLG00000017763) #11	AGTPBP1 (ENSHGLG00000017732) #10	ENSHGLG00000039492	ENSHGLG00000039873	NTRK2 (ENSHGLG00000017693) #9	SLC28A3 (ENSHGLG00000017777) #8	ENSHGLG00000033908	RMI1 (ENSHGLG00000048963) #7	ENSHGLG00000036726	ENSHGLG00000048823	ENSHGLG00000032986	ENSHGLG00000018511	ENSHGLG00000034355 #16	ENSHGLG00000032822
Naked mole-rat female	MODERN SPECIES	22	TFCP2L1 (ENSHGLG00000041072)	GLI2 (ENSHGLG00000004535)	INHBB (ENSHGLG00000009209)	ENSHGLG00000004693	ENSHGLG00000032912	RALB (ENSHGLG00000037096)	TMEM185B (ENSHGLG00000034185)	ENSHGLG00000008402	ENSHGLG00000035501	PTPN4 (ENSHGLG00000008471)	TMEM177 (ENSHGLG00000014801)	ENSHGLG00000012507	CFAP221 (ENSHGLG00000016525)	SCTR (ENSHGLG00000014846)	TMEM37 (ENSHGLG00000015189)	ENSHGLG00000015203 #22	ENSHGLG00000017824	C2orf76 (ENSHGLG00000017852)	STEAP3 (ENSHGLG00000041983)	ENSHGLG00000047186	C1QL2 (ENSHGLG00000005027)	MARCO (ENSHGLG00000007212)	EN1 (ENSHGLG00000008502)	INSIG2 (ENSHGLG00000048151)	ENSHGLG00000016311	ENSHGLG00000042944	DDX18 (ENSHGLG00000016324)	ENSHGLG00000034383	ENSHGLG00000044680	ENSHGLG00000010182	ENSHGLG00000040375
Lagomorpha	ANCESTRAL SPECIES	150													ENSGT00390000002445 #11	ENSGT00530000063675.b #12	ENSGT00940000156859 #19	ENSGT00940000153424.a.b #22	ENSGT00940000154367.b.f.b	ENSGT00940000154367.b.f.a	ENSGT00390000015513.a.a.b #37	ENSGT00390000015513.a.a.a ##37	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b	ENSGT00940000155950	ENSGT00510000048363
Rabbit	MODERN SPECIES		FGD3 (ENSOCUG00000015829)	ENSOCUG00000037177	FAM120A (ENSOCUG00000010598)	PHF2 (ENSOCUG00000011530)	BARX1 (ENSOCUG00000006551)	PTPDC1 (ENSOCUG00000000256)	ENSOCUG00000033944	ENSOCUG00000034725	ENSOCUG00000026137	ENSOCUG00000033846	ENSOCUG00000026720	ENSOCUG00000022253 #16	NAA35 (ENSOCUG00000001990) #11	GOLM1 (ENSOCUG00000001999) #12	TUT7 (ENSOCUG00000010949) #19	DAPK1 (ENSOCUG00000003518) #22	ENSOCUG00000017008	ENSOCUG00000017854	ENSOCUG00000029172	FBP1 (ENSOCUG00000029295) ##37	AOPEP (ENSOCUG00000000678)	FANCC (ENSOCUG00000010476)	PTCH1 (ENSOCUG00000002973)	ENSOCUG00000008778	ENSOCUG00000000442	ENSOCUG00000023971	HSD17B3 (ENSOCUG00000008531)	SLC35D2 (ENSOCUG00000008540)	ENSOCUG00000023077	ENSOCUG00000005332	PRXL2C (ENSOCUG00000013208)
Pika	MODERN SPECIES	4343																ENSOPRG00000008183 #22	ENSOPRG00000008222
Tree shrew	MODERN SPECIES	2536															ENSTBEG00000015687	DAPK1 (ENSTBEG00000015766) #22