Gnathostomata	ANCESTRAL SPECIES	47						ENSGT00940000157796	ENSGT00940000155399	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a #22	ENSGT00940000155907.b #23	ENSGT00940000164936	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.b.b.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES	27	ENSGT00940000155491.c	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00940000164936	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000010331	ENSGT00940000165890	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206
Sarcopterygii	ANCESTRAL SPECIES	49	ENSGT00940000162656	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.b.b.b.b.a	ENSGT01030000234542.b.a.a.a.b ##31	ENSGT01030000234542.b.a.a.b.a.b ##31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000175407	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.b.b.b.b.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000175407	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT01030000234542.b.a.a.b.a.b ##31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000156926	ENSGT00390000006654	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Theria	ANCESTRAL SPECIES	22	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Eutheria	ANCESTRAL SPECIES	8	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00940000162206
Primates	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Greater bamboo lemur	MODERN SPECIES	105	SPG21 (ENSPSMG00000000822) #7	ANKDD1A (ENSPSMG00000000929) #8	PLEKHO2 (ENSPSMG00000000943) #9	PIF1 (ENSPSMG00000000997) #10	ENSPSMG00000001007 #11	OAZ2 (ENSPSMG00000001030) #12	ENSPSMG00000001037 #13	ZNF609 (ENSPSMG00000001049) #14	TRIP4 (ENSPSMG00000001102) #15	PCLAF (ENSPSMG00000001141) #16	CSNK1G1 (ENSPSMG00000001719) #17	PPIB (ENSPSMG00000002859) #18	SNX22 (ENSPSMG00000002870) #19	SNX1 (ENSPSMG00000003000) #20	CIAO2A (ENSPSMG00000003334) #21	DAPK2 (ENSPSMG00000003359) #22	HERC1 (ENSPSMG00000003501) #23	FBXL22 (ENSPSMG00000003647) #24	USP3 (ENSPSMG00000003840) #25	CA12 (ENSPSMG00000004183) #26	APH1B (ENSPSMG00000004224) #27	RAB8B (ENSPSMG00000004246) #28	ENSPSMG00000004263 #29	LACTB (ENSPSMG00000004273) #30	TPM1 (ENSPSMG00000005012) #31	ENSPSMG00000005970 #32	TLN2 (ENSPSMG00000006148) #33	PARP16 (ENSPSMG00000006207) #34	IGDCC3 (ENSPSMG00000006222) #35	IGDCC4 (ENSPSMG00000006239) #36	DPP8 (ENSPSMG00000006379) #37
Coquerels sifaka	MODERN SPECIES	325			MEGF10 (ENSPCOG00000020682)	PRRC1 (ENSPCOG00000012334)	ENSPCOG00000027436	SLC12A2 (ENSPCOG00000019973)	FBN2 (ENSPCOG00000017451)	SLC27A6 (ENSPCOG00000004529)	ENSPCOG00000007302	ADAMTS19 (ENSPCOG00000025835)	MINAR2 (ENSPCOG00000019054)	CHSY3 (ENSPCOG00000008311)	SNX22 (ENSPCOG00000019836) #19	SNX1 (ENSPCOG00000022932) #20	CIAO2A (ENSPCOG00000020991) #21	DAPK2 (ENSPCOG00000015063) #22	HERC1 (ENSPCOG00000005498) #23	ENSPCOG00000022045	FBXL22 (ENSPCOG00000000106) #24	USP3 (ENSPCOG00000014844) #25	CA12 (ENSPCOG00000021575) #26	APH1B (ENSPCOG00000009964) #27	ENSPCOG00000021249	RAB8B (ENSPCOG00000019172) #28	ENSPCOG00000023923	LACTB (ENSPCOG00000023709) #30	TPM1 (ENSPCOG00000016673) #31	TLN2 (ENSPCOG00000020937) #33	ENSPCOG00000017377	VPS13C (ENSPCOG00000025107)
Mouse lemur	MODERN SPECIES	22	ANKDD1A (ENSMICG00000002854) #8	PLEKHO2 (ENSMICG00000047618) #9	PIF1 (ENSMICG00000007373) #10	RBPMS2 (ENSMICG00000029953) #11	ENSMICG00000007349	OAZ2 (ENSMICG00000007344) #12	ZNF609 (ENSMICG00000031327) #14	TRIP4 (ENSMICG00000008679) #15	PCLAF (ENSMICG00000008673) #16	CSNK1G1 (ENSMICG00000003315) #17	ENSMICG00000031175	PPIB (ENSMICG00000038643) #18	SNX22 (ENSMICG00000000405) #19	SNX1 (ENSMICG00000011078) #20	ENSMICG00000036936 #21	DAPK2 (ENSMICG00000011065) #22	HERC1 (ENSMICG00000007158) #23	FBXL22 (ENSMICG00000007146) #24	ENSMICG00000034930	USP3 (ENSMICG00000007133) #25	CA12 (ENSMICG00000007123) #26	APH1B (ENSMICG00000007117) #27	RAB8B (ENSMICG00000043942) #28	ENSMICG00000007109 #29	LACTB (ENSMICG00000007103) #30	TPM1 (ENSMICG00000028096) #31	TLN2 (ENSMICG00000002620) #33	ENSMICG00000032839	ENSMICG00000042306	VPS13C (ENSMICG00000015617)	RORA (ENSMICG00000010861)
Bushbaby	MODERN SPECIES	126	MTFMT (ENSOGAG00000010388)	SPG21 (ENSOGAG00000010385) #7	PLEKHO2 (ENSOGAG00000010379) #9	PIF1 (ENSOGAG00000010371) #10	RBPMS2 (ENSOGAG00000026017) #11	OAZ2 (ENSOGAG00000012443) #12	ZNF609 (ENSOGAG00000012432) #14	TRIP4 (ENSOGAG00000012427) #15	PCLAF (ENSOGAG00000003982) #16	CSNK1G1 (ENSOGAG00000016882) #17	PPIB (ENSOGAG00000001933) #18	SNX22 (ENSOGAG00000001931) #19	ENSOGAG00000001925 #20	ENSOGAG00000024544	CIAO2A (ENSOGAG00000001924) #21	DAPK2 (ENSOGAG00000027766) #22	HERC1 (ENSOGAG00000013134) #23	ENSOGAG00000025353 #24	ENSOGAG00000032162	USP3 (ENSOGAG00000013129) #25	ENSOGAG00000030840	CA12 (ENSOGAG00000002515) #26	APH1B (ENSOGAG00000034676) #27	RAB8B (ENSOGAG00000002514) #28	ENSOGAG00000002513 #29	LACTB (ENSOGAG00000026764) #30	ENSOGAG00000029885	TPM1 (ENSOGAG00000002509) #31	TLN2 (ENSOGAG00000016126) #33	ENSOGAG00000032289	ENSOGAG00000028784
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Tarsier	MODERN SPECIES	4897									TRIP4 (ENSTSYG00000007185) #15	PCLAF (ENSTSYG00000009438) #16	CSNK1G1 (ENSTSYG00000013750) #17	PPIB (ENSTSYG00000028947) #18	ENSTSYG00000026988 #19	SNX1 (ENSTSYG00000030172) #20	FAM96A (ENSTSYG00000034548) #21	DAPK2 (ENSTSYG00000012419) #22
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765.f	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Cebidae	ANCESTRAL SPECIES	29	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.i.b
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00510000047616.b.j	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00390000015930.w	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Capuchin	MODERN SPECIES	386	ENSCCAG00000037021	SPG21 (ENSCCAG00000020796) #7	ANKDD1A (ENSCCAG00000032885) #8	PLEKHO2 (ENSCCAG00000024801) #9	PIF1 (ENSCCAG00000033317) #10	RBPMS2 (ENSCCAG00000036496) #11	OAZ2 (ENSCCAG00000031358) #12	ZNF609 (ENSCCAG00000023662) #14	TRIP4 (ENSCCAG00000026483) #15	PCLAF (ENSCCAG00000035573) #16	CSNK1G1 (ENSCCAG00000028280) #17	PPIB (ENSCCAG00000037462) #18	SNX22 (ENSCCAG00000035856) #19	SNX1 (ENSCCAG00000036677) #20	CIAO2A (ENSCCAG00000018177) #21	DAPK2 (ENSCCAG00000026794) #22	HERC1 (ENSCCAG00000023581) #23	FBXL22 (ENSCCAG00000035888) #24	USP3 (ENSCCAG00000029496) #25	CA12 (ENSCCAG00000027249) #26
Bolivian squirrel monkey	MODERN SPECIES	179	PLEKHO2 (ENSSBOG00000029901) #9	PIF1 (ENSSBOG00000020526) #10	RBPMS2 (ENSSBOG00000020118) #11	ENSSBOG00000022217 #12	ZNF609 (ENSSBOG00000032672) #14	ENSSBOG00000034750	TRIP4 (ENSSBOG00000020516) #15	ENSSBOG00000007219	CSNK1G1 (ENSSBOG00000026971) #17	ENSSBOG00000031609	PPIB (ENSSBOG00000034439) #18	SNX22 (ENSSBOG00000025574) #19	SNX1 (ENSSBOG00000000463) #20	ENSSBOG00000034764	CIAO2A (ENSSBOG00000020628) #21	DAPK2 (ENSSBOG00000018728) #22	TTC8 (ENSSBOG00000021140)	EML5 (ENSSBOG00000026643)	ENSSBOG00000017936	PTPN21 (ENSSBOG00000023528)	SPATA7 (ENSSBOG00000033474)	ENSSBOG00000030432	ENSSBOG00000036347	KCNK10 (ENSSBOG00000021387)	ENSSBOG00000023389	GALC (ENSSBOG00000026713)
Marmoset	MODERN SPECIES	1	ANKDD1A (ENSCJAG00000031989) #8	ENSCJAG00000075564	PLEKHO2 (ENSCJAG00000040691) #9	PIF1 (ENSCJAG00000005214) #10	RBPMS2 (ENSCJAG00000005200) #11	OAZ2 (ENSCJAG00000005156) #12	ENSCJAG00000086243	ZNF609 (ENSCJAG00000005128) #14	TRIP4 (ENSCJAG00000005107) #15	PCLAF (ENSCJAG00000037051) #16	CSNK1G1 (ENSCJAG00000005023) #17	PPIB (ENSCJAG00000004981) #18	SNX22 (ENSCJAG00000005006) #19	SNX1 (ENSCJAG00000004856) #20	CIAO2A (ENSCJAG00000084496) #21	DAPK2 (ENSCJAG00000004806) #22	ENSCJAG00000070880	HERC1 (ENSCJAG00000004567) #23	ENSCJAG00000004563 #24	USP3 (ENSCJAG00000004506) #25	CA12 (ENSCJAG00000011284) #26	APH1B (ENSCJAG00000011305) #27	RAB8B (ENSCJAG00000042696) #28	ENSCJAG00000044434 #29	LACTB (ENSCJAG00000004470) #30	TPM1 (ENSCJAG00000004355) #31	TLN2 (ENSCJAG00000004289) #33	ENSCJAG00000077304	C2CD4B (ENSCJAG00000041706)	C2CD4A (ENSCJAG00000004269)	ENSCJAG00000072396
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00940000154170.B #8	ENSGT00910000148680	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000154170.B #8	ENSGT00910000148680	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a
Hominidae	ANCESTRAL SPECIES	22	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Pan	ANCESTRAL SPECIES	20	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00940000164336 #29	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a	ENSGT00950000183083.a.d.a
Chimpanzee	MODERN SPECIES	6	ANKDD1A (ENSPTRG00000007169) #8	PLEKHO2 (ENSPTRG00000007168) #9	PIF1 (ENSPTRG00000007166) #10	RBPMS2 (ENSPTRG00000007165) #11	OAZ2 (ENSPTRG00000007164) #12	ENSPTRG00000044786	ZNF609 (ENSPTRG00000007163) #14	TRIP4 (ENSPTRG00000007160) #15	PCLAF (ENSPTRG00000007159) #16	ENSPTRG00000043374	CSNK1G1 (ENSPTRG00000007157) #17	PPIB (ENSPTRG00000007156) #18	SNX22 (ENSPTRG00000048032) #19	SNX1 (ENSPTRG00000007154) #20	CIAO2A (ENSPTRG00000007153) #21	DAPK2 (ENSPTRG00000007152) #22	HERC1 (ENSPTRG00000007151) #23	ENSPTRG00000051906 #24	USP3 (ENSPTRG00000007149) #25	CA12 (ENSPTRG00000051680) #26	APH1B (ENSPTRG00000007146) #27	RAB8B (ENSPTRG00000043064) #28	ENSPTRG00000007144 #29	LACTB (ENSPTRG00000007143) #30	TPM1 (ENSPTRG00000007141) #31	ENSPTRG00000043477	TLN2 (ENSPTRG00000007140) #33	ENSPTRG00000050886	C2CD4B (ENSPTRG00000049027)	C2CD4A (ENSPTRG00000030264)	VPS13C (ENSPTRG00000007135)
Gorilla	MODERN SPECIES	6	ANKDD1A (ENSGGOG00000003179) #8	PLEKHO2 (ENSGGOG00000005801) #9	PIF1 (ENSGGOG00000012347) #10	RBPMS2 (ENSGGOG00000008984) #11	OAZ2 (ENSGGOG00000013379) #12	ENSGGOG00000026667	ZNF609 (ENSGGOG00000000867) #14	TRIP4 (ENSGGOG00000022608) #15	PCLAF (ENSGGOG00000003697) #16	CSNK1G1 (ENSGGOG00000004826) #17	ENSGGOG00000042669	PPIB (ENSGGOG00000011086) #18	ENSGGOG00000038781 #19	SNX1 (ENSGGOG00000011072) #20	CIAO2A (ENSGGOG00000016550) #21	ENSGGOG00000016537 #22	HERC1 (ENSGGOG00000013126) #23	ENSGGOG00000024384 #24	ENSGGOG00000044118	USP3 (ENSGGOG00000015288) #25	CA12 (ENSGGOG00000002094) #26	APH1B (ENSGGOG00000043020) #27	RAB8B (ENSGGOG00000008799) #28	RPS27L (ENSGGOG00000025910)	LACTB (ENSGGOG00000014658) #30	TPM1 (ENSGGOG00000009130) #31	TLN2 (ENSGGOG00000015139) #33	ENSGGOG00000043465	C2CD4B (ENSGGOG00000025149)	ENSGGOG00000024083	VPS13C (ENSGGOG00000016853)
Orangutan	MODERN SPECIES	6	MTFMT (ENSPPYG00000006558)	SPG21 (ENSPPYG00000006557) #7	ANKDD1A (ENSPPYG00000006556) #8	PLEKHO2 (ENSPPYG00000006555) #9	PIF1 (ENSPPYG00000006554) #10	RBPMS2 (ENSPPYG00000030244) #11	OAZ2 (ENSPPYG00000006552) #12	ZNF609 (ENSPPYG00000006551) #14	TRIP4 (ENSPPYG00000006550) #15	PCLAF (ENSPPYG00000006549) #16	CSNK1G1 (ENSPPYG00000006548) #17	PPIB (ENSPPYG00000041014) #18	SNX22 (ENSPPYG00000040033) #19	SNX1 (ENSPPYG00000006545) #20	CIAO2A (ENSPPYG00000033735) #21	ENSPPYG00000006543 #22	HERC1 (ENSPPYG00000029751) #23	ENSPPYG00000036524 #24	USP3 (ENSPPYG00000006541) #25	CA12 (ENSPPYG00000006540) #26	APH1B (ENSPPYG00000006539) #27	RAB8B (ENSPPYG00000006538) #28	ENSPPYG00000006537 #29	LACTB (ENSPPYG00000006536) #30	TPM1 (ENSPPYG00000006534) #31	TLN2 (ENSPPYG00000006533) #33	ENSPPYG00000033556	C2CD4B (ENSPPYG00000006531)	C2CD4A (ENSPPYG00000006530)	VPS13C (ENSPPYG00000006529)	RORA (ENSPPYG00000006528)
Gibbon	MODERN SPECIES	21	ANKDD1A (ENSNLEG00000012524) #8	ENSNLEG00000031983	PLEKHO2 (ENSNLEG00000026992) #9	ENSNLEG00000012512 #10	ENSNLEG00000012505 #11	OAZ2 (ENSNLEG00000034581) #12	ENSNLEG00000012477 #14	TRIP4 (ENSNLEG00000012455) #15	PCLAF (ENSNLEG00000029458) #16	CSNK1G1 (ENSNLEG00000012422) #17	ENSNLEG00000027968	PPIB (ENSNLEG00000012419) #18	SNX22 (ENSNLEG00000012416) #19	SNX1 (ENSNLEG00000012400) #20	CIAO2A (ENSNLEG00000033312) #21	ENSNLEG00000012381 #22	HERC1 (ENSNLEG00000012301) #23	ENSNLEG00000012299 #24	ENSNLEG00000029982	USP3 (ENSNLEG00000012274) #25	CA12 (ENSNLEG00000012252) #26	APH1B (ENSNLEG00000012240) #27	RAB8B (ENSNLEG00000012227) #28	RPS27L (ENSNLEG00000027571)	LACTB (ENSNLEG00000012215) #30	ENSNLEG00000012145 #31	ENSNLEG00000006575	ENSNLEG00000012111 #33	ENSNLEG00000031415	C2CD4A (ENSNLEG00000012098)	VPS13C (ENSNLEG00000011894)
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000154170.B #8	ENSGT00910000148680	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a	ENSGT00950000183083.a.d.a
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Golden snub-nosed monkey	MODERN SPECIES	3011	PLEKHO2 (ENSRROG00000037689) #9	PIF1 (ENSRROG00000031261) #10	RBPMS2 (ENSRROG00000006473) #11	OAZ2 (ENSRROG00000037730) #12	ENSRROG00000031151	ZNF609 (ENSRROG00000027300) #14	TRIP4 (ENSRROG00000030525) #15	PCLAF (ENSRROG00000038580) #16	ENSRROG00000037413	CSNK1G1 (ENSRROG00000038647) #17	PPIB (ENSRROG00000035509) #18	SNX22 (ENSRROG00000030756) #19	ENSRROG00000038172	SNX1 (ENSRROG00000044871) #20	CIAO2A (ENSRROG00000031571) #21	DAPK2 (ENSRROG00000029585) #22	HERC1 (ENSRROG00000045183) #23	FBXL22 (ENSRROG00000032880) #24	USP3 (ENSRROG00000043098) #25
Black snub-nosed monkey	MODERN SPECIES	772	ANKDD1A (ENSRBIG00000018797) #8	PLEKHO2 (ENSRBIG00000041923) #9	PIF1 (ENSRBIG00000032740) #10	ENSRBIG00000028253 #11	OAZ2 (ENSRBIG00000029389) #12	ZNF609 (ENSRBIG00000018885) #14	TRIP4 (ENSRBIG00000038027) #15	ENSRBIG00000032907	ENSRBIG00000027525	CSNK1G1 (ENSRBIG00000043099) #17	PPIB (ENSRBIG00000024367) #18	SNX22 (ENSRBIG00000029016) #19	ENSRBIG00000043758	SNX1 (ENSRBIG00000035192) #20	CIAO2A (ENSRBIG00000030155) #21	DAPK2 (ENSRBIG00000029819) #22	ENSRBIG00000006079	ENSRBIG00000030093	ENSRBIG00000029554	CHCHD3 (ENSRBIG00000029228)	ENSRBIG00000040816	PLXNA4 (ENSRBIG00000036387)
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00910000148680	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a	ENSGT00950000183083.a.d.a
Vervet Monkey	MODERN SPECIES	18	SLC51B (ENSCSAG00000012708)	MTFMT (ENSCSAG00000012690)	SPG21 (ENSCSAG00000012649) #7	ANKDD1A (ENSCSAG00000012637) #8	PLEKHO2 (ENSCSAG00000012623) #9	PIF1 (ENSCSAG00000012607) #10	RBPMS2 (ENSCSAG00000012562) #11	OAZ2 (ENSCSAG00000012556) #12	ZNF609 (ENSCSAG00000012538) #14	TRIP4 (ENSCSAG00000012499) #15	PCLAF (ENSCSAG00000012494) #16	CSNK1G1 (ENSCSAG00000012487) #17	SNX22 (ENSCSAG00000012470) #19	SNX1 (ENSCSAG00000012452) #20	ENSCSAG00000012437 #21	DAPK2 (ENSCSAG00000012418) #22	HERC1 (ENSCSAG00000012399) #23	FBXL22 (ENSCSAG00000012364) #24	USP3 (ENSCSAG00000012354) #25	CA12 (ENSCSAG00000012342) #26	APH1B (ENSCSAG00000012332) #27	RAB8B (ENSCSAG00000012326) #28	LACTB (ENSCSAG00000012318) #30	TPM1 (ENSCSAG00000012303) #31	TLN2 (ENSCSAG00000012262) #33	ENSCSAG00000012237	ENSCSAG00000012210	C2CD4B (ENSCSAG00000019738)	C2CD4A (ENSCSAG00000019739)	VPS13C (ENSCSAG00000012132)	RORA (ENSCSAG00000012081)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000154170.B #8	ENSGT00910000148680	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00940000154170.B #8	ENSGT00910000148680	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00390000008820.e.b.a.a.a.a	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Olive baboon	MODERN SPECIES	17	SPG21 (ENSPANG00000016758) #7	ANKDD1A (ENSPANG00000016757) #8	ENSPANG00000034589	PLEKHO2 (ENSPANG00000016756) #9	PIF1 (ENSPANG00000016755) #10	RBPMS2 (ENSPANG00000016754) #11	OAZ2 (ENSPANG00000016753) #12	ZNF609 (ENSPANG00000016751) #14	TRIP4 (ENSPANG00000016750) #15	PCLAF (ENSPANG00000016813) #16	CSNK1G1 (ENSPANG00000016816) #17	PPIB (ENSPANG00000046216) #18	SNX22 (ENSPANG00000016815) #19	SNX1 (ENSPANG00000016878) #20	ENSPANG00000016877 #21	DAPK2 (ENSPANG00000016876) #22	HERC1 (ENSPANG00000016930) #23	FBXL22 (ENSPANG00000029475) #24	USP3 (ENSPANG00000016961) #25	CA12 (ENSPANG00000016960) #26	APH1B (ENSPANG00000016959) #27	RAB8B (ENSPANG00000016985) #28	RPS27L (ENSPANG00000034038)	LACTB (ENSPANG00000016984) #30	ENSPANG00000016983 #31	ENSPANG00000048538	ENSPANG00000001886	ENSPANG00000042891	ENSPANG00000031248	ENSPANG00000017172	ENSPANG00000040994
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00390000008820.e.b.a.a.a.a	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Sooty mangabey	MODERN SPECIES	336	SPG21 (ENSCATG00000043599) #7	ANKDD1A (ENSCATG00000035001) #8	PLEKHO2 (ENSCATG00000034692) #9	PIF1 (ENSCATG00000030698) #10	RBPMS2 (ENSCATG00000042116) #11	OAZ2 (ENSCATG00000025657) #12	ZNF609 (ENSCATG00000041765) #14	ENSCATG00000037586	TRIP4 (ENSCATG00000041144) #15	PCLAF (ENSCATG00000025742) #16	CSNK1G1 (ENSCATG00000043325) #17	PPIB (ENSCATG00000040323) #18	SNX22 (ENSCATG00000002979) #19	SNX1 (ENSCATG00000033770) #20	CIAO2A (ENSCATG00000033389) #21	DAPK2 (ENSCATG00000043801) #22	HERC1 (ENSCATG00000031246) #23	FBXL22 (ENSCATG00000033595) #24	USP3 (ENSCATG00000026128) #25	CA12 (ENSCATG00000029646) #26	APH1B (ENSCATG00000031142) #27	RAB8B (ENSCATG00000034026) #28	RPS27L (ENSCATG00000019220)	LACTB (ENSCATG00000032182) #30	TPM1 (ENSCATG00000043567) #31	TLN2 (ENSCATG00000039955) #33	ENSCATG00000020724	VPS13C (ENSCATG00000041944)	RORA (ENSCATG00000041834)	ICE2 (ENSCATG00000043106)	ANXA2 (ENSCATG00000043236)
Drill	MODERN SPECIES	253	PLEKHO2 (ENSMLEG00000020553) #9	PIF1 (ENSMLEG00000037741) #10	RBPMS2 (ENSMLEG00000035922) #11	OAZ2 (ENSMLEG00000035152) #12	ENSMLEG00000035161	ENSMLEG00000043031	ZNF609 (ENSMLEG00000041950) #14	TRIP4 (ENSMLEG00000027911) #15	PCLAF (ENSMLEG00000026006) #16	ENSMLEG00000041658	CSNK1G1 (ENSMLEG00000030799) #17	PPIB (ENSMLEG00000028165) #18	SNX22 (ENSMLEG00000033044) #19	SNX1 (ENSMLEG00000033222) #20	ENSMLEG00000042755 #21	DAPK2 (ENSMLEG00000033599) #22	HERC1 (ENSMLEG00000032497) #23	FBXL22 (ENSMLEG00000010253) #24	USP3 (ENSMLEG00000038500) #25	CA12 (ENSMLEG00000038571) #26	RAB8B (ENSMLEG00000033843) #28	LACTB (ENSMLEG00000043855) #30	TPM1 (ENSMLEG00000043798) #31	ENSMLEG00000040651	TLN2 (ENSMLEG00000037977) #33	ENSMLEG00000008407	ENSMLEG00000033514
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300.b #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Pig-tailed macaque	MODERN SPECIES	77	SPG21 (ENSMNEG00000040418) #7	ANKDD1A (ENSMNEG00000037506) #8	PLEKHO2 (ENSMNEG00000033712) #9	PIF1 (ENSMNEG00000035581) #10	RBPMS2 (ENSMNEG00000019330) #11	OAZ2 (ENSMNEG00000014297) #12	ZNF609 (ENSMNEG00000041662) #14	ENSMNEG00000043120	TRIP4 (ENSMNEG00000033592) #15	PCLAF (ENSMNEG00000030492) #16	CSNK1G1 (ENSMNEG00000044820) #17	PPIB (ENSMNEG00000041616) #18	SNX22 (ENSMNEG00000032129) #19	SNX1 (ENSMNEG00000040604) #20	ENSMNEG00000038611 #21	DAPK2 (ENSMNEG00000037814) #22	HERC1 (ENSMNEG00000042046) #23	FBXL22 (ENSMNEG00000003587) #24	USP3 (ENSMNEG00000040681) #25	CA12 (ENSMNEG00000035236) #26	APH1B (ENSMNEG00000034795) #27	RAB8B (ENSMNEG00000033725) #28	RPS27L (ENSMNEG00000033448)	LACTB (ENSMNEG00000032367) #30	TPM1 (ENSMNEG00000031245) #31	ENSMNEG00000034201	TLN2 (ENSMNEG00000028802) #33	ENSMNEG00000013327	VPS13C (ENSMNEG00000030758)	RORA (ENSMNEG00000020975)	ICE2 (ENSMNEG00000034514)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT01100000263539.b.b.a.a.a.b.b.a	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300.b #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a	ENSGT00390000008820.e.b.a.a.a	ENSGT00950000183083.a.d.a	ENSGT00940000164709.a.b.b.a.a.a.a.a.b.a
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	17	ENSMMUG00000049680	ENSMMUG00000051023	ANKDD1A (ENSMMUG00000010948) #8	ENSMMUG00000051391	PIF1 (ENSMMUG00000006366) #10	RBPMS2 (ENSMMUG00000013270) #11	OAZ2 (ENSMMUG00000044385) #12	ZNF609 (ENSMMUG00000001247) #14	TRIP4 (ENSMMUG00000009882) #15	PCLAF (ENSMMUG00000029603) #16	CSNK1G1 (ENSMMUG00000021124) #17	PPIB (ENSMMUG00000045241) #18	SNX22 (ENSMMUG00000021122) #19	SNX1 (ENSMMUG00000014005) #20	CIAO2A (ENSMMUG00000014004) #21	DAPK2 (ENSMMUG00000018177) #22	HERC1 (ENSMMUG00000012117) #23	FBXL22 (ENSMMUG00000012116) #24	USP3 (ENSMMUG00000012114) #25	CA12 (ENSMMUG00000021338) #26	APH1B (ENSMMUG00000059755) #27	RAB8B (ENSMMUG00000013460) #28	RPS27L (ENSMMUG00000016350)	LACTB (ENSMMUG00000003544) #30	TPM1 (ENSMMUG00000001587) #31	ENSMMUG00000056092	TLN2 (ENSMMUG00000011503) #33	C2CD4B (ENSMMUG00000058198)	C2CD4A (ENSMMUG00000060717)	ENSMMUG00000013725	VPS13C (ENSMMUG00000001362)
Rhesus	MODERN SPECIES	10	ENSMMUG00000059812	STAP2 (ENSMMUG00000000271)	FSD1 (ENSMMUG00000000268)	TMIGD2 (ENSMMUG00000045860)	SHD (ENSMMUG00000028927)	YJU2 (ENSMMUG00000010100)	ANKRD24 (ENSMMUG00000028928)	SIRT6 (ENSMMUG00000019955)	CREB3L3 (ENSMMUG00000019954)	ENSMMUG00000063002	MAP2K2 (ENSMMUG00000019564)	ZBTB7A (ENSMMUG00000063320)	PIAS4 (ENSMMUG00000011018)	EEF2 (ENSMMUG00000022767)	ENSMMUG00000065079	DAPK3 (ENSMMUG00000022765) #22	NMRK2 (ENSMMUG00000015273)	ENSMMUG00000056147	ENSMMUG00000064233	ATCAY (ENSMMUG00000039195)	ZFR2 (ENSMMUG00000054579)	MATK (ENSMMUG00000001917)	RAX2 (ENSMMUG00000056802)	MRPL54 (ENSMMUG00000044080)	APBA3 (ENSMMUG00000009672)	TJP3 (ENSMMUG00000028930)	PIP5K1C (ENSMMUG00000008137)	CACTIN (ENSMMUG00000028931)	TBXA2R (ENSMMUG00000011403)	GIPC3 (ENSMMUG00000011402)	HMG20B (ENSMMUG00000018096)
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	17	PIF1 (ENSMFAG00000042218) #10	RBPMS2 (ENSMFAG00000045343) #11	OAZ2 (ENSMFAG00000000861) #12	ENSMFAG00000050560	ZNF609 (ENSMFAG00000002867) #14	TRIP4 (ENSMFAG00000036568) #15	PCLAF (ENSMFAG00000064955) #16	ENSMFAG00000063293 #15	ENSMFAG00000000382	ENSMFAG00000065223	CSNK1G1 (ENSMFAG00000002355) #17	PPIB (ENSMFAG00000000853) #18	SNX22 (ENSMFAG00000042949) #19	SNX1 (ENSMFAG00000040273) #20	CIAO2A (ENSMFAG00000035924) #21	DAPK2 (ENSMFAG00000028166) #22	ENSMFAG00000064675	HERC1 (ENSMFAG00000042846) #23	FBXL22 (ENSMFAG00000000573) #24	USP3 (ENSMFAG00000016075) #25	CA12 (ENSMFAG00000040970) #26	APH1B (ENSMFAG00000050606) #27	RAB8B (ENSMFAG00000054576) #28	ENSMFAG00000039460	LACTB (ENSMFAG00000001322) #30	ENSMFAG00000030943 #31	TLN2 (ENSMFAG00000003975) #33	ENSMFAG00000052652	ENSMFAG00000057223	ENSMFAG00000034175	ENSMFAG00000053675
Crab-eating macaque	MODERN SPECIES	10	SH3GL1 (ENSMFAG00000044037)	MPND (ENSMFAG00000033303)	STAP2 (ENSMFAG00000030521)	FSD1 (ENSMFAG00000041951)	SHD (ENSMFAG00000033388)	YJU2 (ENSMFAG00000059349)	TMIGD2 (ENSMFAG00000031969)	EBI3 (ENSMFAG00000038770)	ANKRD24 (ENSMFAG00000038641)	SIRT6 (ENSMFAG00000001546)	CREB3L3 (ENSMFAG00000040065)	ENSMFAG00000053986	MAP2K2 (ENSMFAG00000039192)	PIAS4 (ENSMFAG00000046119)	NMRK2 (ENSMFAG00000033332)	ENSMFAG00000028991 #22	ENSMFAG00000052942	ENSMFAG00000040276	ATCAY (ENSMFAG00000002982)	ZFR2 (ENSMFAG00000031215)	RAX2 (ENSMFAG00000065615)	MATK (ENSMFAG00000030470)	MRPL54 (ENSMFAG00000003311)	APBA3 (ENSMFAG00000044015)	MFSD12 (ENSMFAG00000039649)	TEKTIP1 (ENSMFAG00000036699)	FZR1 (ENSMFAG00000003458)	SMIM24 (ENSMFAG00000037612)	NFIC (ENSMFAG00000000744)	ENSMFAG00000050957	ENSMFAG00000031277
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00940000163765
Glires	ANCESTRAL SPECIES	15	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00940000163765
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00940000170308	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.i.a
Rabbit	MODERN SPECIES	8	ENSOCUG00000031622	PLEKHO2 (ENSOCUG00000022486) #9	PIF1 (ENSOCUG00000005347) #10	RBPMS2 (ENSOCUG00000010388) #11	OAZ2 (ENSOCUG00000017341) #12	ZNF609 (ENSOCUG00000002325) #14	TRIP4 (ENSOCUG00000002322) #15	ENSOCUG00000032107	ENSOCUG00000022442	CSNK1G1 (ENSOCUG00000012015) #17	ENSOCUG00000014619	PPIB (ENSOCUG00000012012) #18	SNX1 (ENSOCUG00000005449) #20	SNX22 (ENSOCUG00000021757) #19	CIAO2A (ENSOCUG00000009575) #21	DAPK2 (ENSOCUG00000000435) #22	HERC1 (ENSOCUG00000014796) #23	FBXL22 (ENSOCUG00000014791) #24	USP3 (ENSOCUG00000014775) #25	CA12 (ENSOCUG00000004632) #26	APH1B (ENSOCUG00000004627) #27	ENSOCUG00000035129	RAB8B (ENSOCUG00000010005) #28	ENSOCUG00000038276	LACTB (ENSOCUG00000009995) #30	ENSOCUG00000030711	TPM1 (ENSOCUG00000014122) #31	TLN2 (ENSOCUG00000013064) #33	ENSOCUG00000038392	ENSOCUG00000031516	ENSOCUG00000010276
Pika	MODERN SPECIES	423																ENSOPRG00000004645 #22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Kangaroo rat	MODERN SPECIES	383	Sh3gl1 (ENSDORG00000012390)	Mpnd (ENSDORG00000012389)	Stap2 (ENSDORG00000012387)	Fsd1 (ENSDORG00000012386)	Shd (ENSDORG00000006647)	Yju2 (ENSDORG00000006645)	Ebi3 (ENSDORG00000006642)	ENSDORG00000006638	ENSDORG00000027304	Sirt6 (ENSDORG00000003338)	Creb3l3 (ENSDORG00000003335)	Map2k2 (ENSDORG00000001269)	Zbtb7a (ENSDORG00000002712)	Pias4 (ENSDORG00000002710)	Eef2 (ENSDORG00000012229)	ENSDORG00000012226 #22	Atcay (ENSDORG00000000661)	Lsm7 (ENSDORG00000024460)	Sppl2b (ENSDORG00000004034)	Tmprss9 (ENSDORG00000002599)	Timm13 (ENSDORG00000015661)	Lmnb2 (ENSDORG00000002602)	Gadd45b (ENSDORG00000025421)	Gng7 (ENSDORG00000001766)	Diras1 (ENSDORG00000006599)	Slc39a3 (ENSDORG00000029412)	Sgta (ENSDORG00000009907)	Thop1 (ENSDORG00000008967)	ENSDORG00000025434	Tle5 (ENSDORG00000029584)	Gna11 (ENSDORG00000025425)
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Lesser Egyptian jerboa	MODERN SPECIES	320																ENSJJAG00000000350 #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Mus	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000017828.s	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252.m #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.u.a #27	ENSGT00390000002049.c.b.u.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a
Mouse	MODERN SPECIES	18	Mtfmt (ENSMUSG00000059183)	Spg21 (ENSMUSG00000032388) #7	Ankdd1a (ENSMUSG00000066510) #8	Plekho2 (ENSMUSG00000050721) #9	Pif1 (ENSMUSG00000041064) #10	Rbpms2 (ENSMUSG00000032387) #11	Oaz2 (ENSMUSG00000040652) #12	Zfp609 (ENSMUSG00000040524) #14	Trip4 (ENSMUSG00000032386) #15	Pclaf (ENSMUSG00000040204) #16	Csnk1g1 (ENSMUSG00000032384) #17	Ppib (ENSMUSG00000032383) #18	Snx22 (ENSMUSG00000039452) #19	Snx1 (ENSMUSG00000032382) #20	Ciao2a (ENSMUSG00000032381) #21	Dapk2 (ENSMUSG00000032380) #22	Herc1 (ENSMUSG00000038664) #23	Fbxl22 (ENSMUSG00000050503) #24	Usp3 (ENSMUSG00000032376) #25	Car12 (ENSMUSG00000032373) #26	Aph1b (ENSMUSG00000032375) #27	Aph1c (ENSMUSG00000053040) #27	Rab8b (ENSMUSG00000036943) #28	Rps27l (ENSMUSG00000036781)	Lactb (ENSMUSG00000032370) #30	Tpm1 (ENSMUSG00000032366) #31	Tln2 (ENSMUSG00000052698) #33	C2cd4b (ENSMUSG00000091956)	C2cd4a (ENSMUSG00000047990)	Vps13c (ENSMUSG00000035284)	Rora (ENSMUSG00000032238)
Rat	MODERN SPECIES	18	Mtfmt (ENSRNOG00000014602)	Spg21 (ENSRNOG00000015019) #7	Ankdd1a (ENSRNOG00000015554) #8	Plekho2 (ENSRNOG00000029242) #9	Pif1 (ENSRNOG00000015878) #10	Rbpms2 (ENSRNOG00000015896) #11	Oaz2 (ENSRNOG00000015953) #12	Zfp609 (ENSRNOG00000015977) #14	Trip4 (ENSRNOG00000016121) #15	Pclaf (ENSRNOG00000067723)	Csnk1g1 (ENSRNOG00000016620) #17	Ppib (ENSRNOG00000016781) #18	Snx22 (ENSRNOG00000022852) #19	Snx1 (ENSRNOG00000017029) #20	Ciao2a (ENSRNOG00000017119) #21	Dapk2 (ENSRNOG00000017332) #22	Herc1 (ENSRNOG00000051671) #23	Fbxl22 (ENSRNOG00000017684) #24	Usp3 (ENSRNOG00000017714) #25	Car12 (ENSRNOG00000017766) #26	LOC691658 (ENSRNOG00000063302) #27	LOC120094192 (ENSRNOG00000067077) #27	Aph1b (ENSRNOG00000027295) #27	Rab8b (ENSRNOG00000018009) #28	Rps27l (ENSRNOG00000050473)	Lactb (ENSRNOG00000018081) #30	Tpm1 (ENSRNOG00000018184) #31	Tln2 (ENSRNOG00000018373) #33	C2cd4b (ENSRNOG00000065921)	C2cd4a (ENSRNOG00000034236)	Vps13c (ENSRNOG00000030213)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000031069	ENSPEMG00000022141	Tmprss9 (ENSPEMG00000017231)	Timm13 (ENSPEMG00000011224)	Lmnb2 (ENSPEMG00000021474)	Gadd45b (ENSPEMG00000021504)	Diras1 (ENSPEMG00000015735)	Slc39a3 (ENSPEMG00000020829)	Sgta (ENSPEMG00000020795)	Thop1 (ENSPEMG00000023842)	Creb3l3 (ENSPEMG00000008823)	Map2k2 (ENSPEMG00000021952)	Zbtb7a (ENSPEMG00000025614)	Pias4 (ENSPEMG00000021214)	Eef2 (ENSPEMG00000021167)	ENSPEMG00000020977 #22	Nmrk2 (ENSPEMG00000021630)	Atcay (ENSPEMG00000021027)	Zfr2 (ENSPEMG00000020763)	Matk (ENSPEMG00000020804)	Mrpl54 (ENSPEMG00000022929)	Apba3 (ENSPEMG00000021227)	Tjp3 (ENSPEMG00000021396)	Pip5k1c (ENSPEMG00000020543)	Cactin (ENSPEMG00000021732)	Tbxa2r (ENSPEMG00000015376)	Gipc3 (ENSPEMG00000014161)	Hmg20b (ENSPEMG00000014935)	Mfsd12 (ENSPEMG00000020766)	Tektip1 (ENSPEMG00000029958)	Fzr1 (ENSPEMG00000020284)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Eurasian red squirrel	MODERN SPECIES	11	SPG21 (ENSSVLG00005022592) #7	ANKDD1A (ENSSVLG00005022263) #8	PLEKHO2 (ENSSVLG00005022144) #9	PIF1 (ENSSVLG00005022000) #10	RBPMS2 (ENSSVLG00005021946) #11	OAZ2 (ENSSVLG00005021896) #12	ENSSVLG00005021862	ZNF609 (ENSSVLG00005021804) #14	TRIP4 (ENSSVLG00005021760) #15	PCLAF (ENSSVLG00005021677) #16	ENSSVLG00005020987 #17	PPIB (ENSSVLG00005020844) #18	SNX22 (ENSSVLG00005020773) #19	SNX1 (ENSSVLG00005020669) #20	CIAO2A (ENSSVLG00005020595) #21	DAPK2 (ENSSVLG00005020537) #22	HERC1 (ENSSVLG00005019826) #23	FBXL22 (ENSSVLG00005019656) #24	USP3 (ENSSVLG00005019582) #25	CA12 (ENSSVLG00005019375) #26	APH1B (ENSSVLG00005019139) #27	RAB8B (ENSSVLG00005019069) #28	ENSSVLG00005018915	LACTB (ENSSVLG00005018852) #30	TPM1 (ENSSVLG00005018158) #31	TLN2 (ENSSVLG00005017833) #33	ENSSVLG00005017744	ENSSVLG00005017686	VPS13C (ENSSVLG00005014425)	RORA (ENSSVLG00005013514)	ICE2 (ENSSVLG00005013300)
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00950000183014.f.b.a.b	ENSGT00940000157312.g	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000013426	ENSHGLG00000018246 #8	PLEKHO2 (ENSHGLG00000014806) #9	PIF1 (ENSHGLG00000015390) #10	RBPMS2 (ENSHGLG00000008504) #11	Oaz2 (ENSHGLG00000034510) #12	ENSHGLG00000045868	ZNF609 (ENSHGLG00000005885) #14	TRIP4 (ENSHGLG00000009286) #15	PCLAF (ENSHGLG00000042208) #16	CSNK1G1 (ENSHGLG00000008107) #17	PPIB (ENSHGLG00000036036) #18	SNX22 (ENSHGLG00000016133) #19	SNX1 (ENSHGLG00000015096) #20	CIAO2A (ENSHGLG00000018054) #21	DAPK2 (ENSHGLG00000013578) #22	HERC1 (ENSHGLG00000015429) #23	ENSHGLG00000006447 #24	USP3 (ENSHGLG00000008193) #25	ENSHGLG00000049466	ENSHGLG00000044085	ENSHGLG00000014469	CA12 (ENSHGLG00000036575) #26	APH1B (ENSHGLG00000031885) #27	ENSHGLG00000042104	RAB8B (ENSHGLG00000049367) #28	ENSHGLG00000008830	LACTB (ENSHGLG00000049143) #30	ENSHGLG00000013579 #31	ENSHGLG00000006753 #33	ENSHGLG00000032199
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Guinea pig	MODERN SPECIES		GALNT15 (ENSCPOG00000003476)	ANKRD28 (ENSCPOG00000015199)	BTD (ENSCPOG00000024569)	PLEKHO2 (ENSCPOG00000030376) #9	PIF1 (ENSCPOG00000008211) #10	RBPMS2 (ENSCPOG00000007695) #11	OAZ2 (ENSCPOG00000001960) #12	ZNF609 (ENSCPOG00000001956) #14	TRIP4 (ENSCPOG00000006483) #15	PCLAF (ENSCPOG00000033197) #16	CSNK1G1 (ENSCPOG00000000256) #17	PPIB (ENSCPOG00000034437) #18	SNX22 (ENSCPOG00000000254) #19	SNX1 (ENSCPOG00000000253) #20	CIAO2A (ENSCPOG00000033175) #21	DAPK2 (ENSCPOG00000000890) #22	ENSCPOG00000030019	ENSCPOG00000007146	PTP4A1 (ENSCPOG00000032105)	LGSN (ENSCPOG00000008736)	KHDRBS2 (ENSCPOG00000025621)	PRIM2 (ENSCPOG00000003912)	ENSCPOG00000035048	RAB23 (ENSCPOG00000030218)	BAG2 (ENSCPOG00000040302)	ZNF451 (ENSCPOG00000002491)	BEND6 (ENSCPOG00000015453)	DST (ENSCPOG00000005092)	SMAD6 (ENSCPOG00000001535)	SMAD3 (ENSCPOG00000021314)	AAGAB (ENSCPOG00000000965)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Hedgehog	MODERN SPECIES	2379																DAPK2 (ENSEEUG00000002281) #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00930000152855
Suina	ANCESTRAL SPECIES	12	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00930000152855	ENSGT00940000162206.h
Pig	MODERN SPECIES		ANKDD1A (ENSSSCG00000004545) #8	ENSSSCG00000037998	PLEKHO2 (ENSSSCG00000004547) #9	PIF1 (ENSSSCG00000004548) #10	RBPMS2 (ENSSSCG00000004549) #11	OAZ2 (ENSSSCG00000004550) #12	ZNF609 (ENSSSCG00000004551) #14	TRIP4 (ENSSSCG00000004552) #15	PCLAF (ENSSSCG00000004554) #16	CSNK1G1 (ENSSSCG00000004558) #17	PPIB (ENSSSCG00000034137) #18	SNX22 (ENSSSCG00000037275) #19	SNX1 (ENSSSCG00000042703) #20	ENSSSCG00000047502	CIAO2A (ENSSSCG00000034124) #21	DAPK2 (ENSSSCG00000021588) #22	HERC1 (ENSSSCG00000004561) #23	FBXL22 (ENSSSCG00000038786) #24	ENSSSCG00000040895	USP3 (ENSSSCG00000028737) #25	ENSSSCG00000059505	CA12 (ENSSSCG00000004565) #26	APH1B (ENSSSCG00000032949) #27	RAB8B (ENSSSCG00000026571) #28	RPS27L (ENSSSCG00000023158)	LACTB (ENSSSCG00000004569) #30	TPM1 (ENSSSCG00000004570) #31	TLN2 (ENSSSCG00000024088) #33	ENSSSCG00000046767	ENSSSCG00000055870	ENSSSCG00000004572
Chacoan peccary	MODERN SPECIES	192	SPG21 (ENSCWAG00000002477) #7	ANKDD1A (ENSCWAG00000002251) #8	PLEKHO2 (ENSCWAG00000002191) #9	PIF1 (ENSCWAG00000002168) #10	ENSCWAG00000002157 #11	OAZ2 (ENSCWAG00000002125) #12	ZNF609 (ENSCWAG00000002093) #14	TRIP4 (ENSCWAG00000002078) #15	PCLAF (ENSCWAG00000002050) #16	CSNK1G1 (ENSCWAG00000002007) #17	PPIB (ENSCWAG00000001979) #18	SNX22 (ENSCWAG00000001957) #19	SNX1 (ENSCWAG00000001903) #20	CIAO2A (ENSCWAG00000001878) #21	ENSCWAG00000001864	DAPK2 (ENSCWAG00000001815) #22	HERC1 (ENSCWAG00000001772) #23	FBXL22 (ENSCWAG00000001746) #24	USP3 (ENSCWAG00000001654) #25	CA12 (ENSCWAG00000001590) #26	APH1B (ENSCWAG00000001558) #27	RAB8B (ENSCWAG00000001533) #28	RPS27L (ENSCWAG00000001510)	LACTB (ENSCWAG00000001493) #30	TPM1 (ENSCWAG00000001033) #31	ENSCWAG00000000960	TLN2 (ENSCWAG00000000763) #33	ENSCWAG00000000712	ENSCWAG00000000707	ENSCWAG00000000701	ENSCWAG00000000689
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.n #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.n #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093.c #13	ENSGT00390000008748.b #14	ENSGT00940000164579.e.b	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.n #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Narwhal	MODERN SPECIES	308	PLEKHO2 (ENSMMNG00015011123) #9	PIF1 (ENSMMNG00015011099) #10	ENSMMNG00015011083	ENSMMNG00015011066 #11	OAZ2 (ENSMMNG00015011033) #12	ENSMMNG00015011020 #13	ZNF609 (ENSMMNG00015010998) #14	ENSMMNG00015010983	TRIP4 (ENSMMNG00015010965) #15	PCLAF (ENSMMNG00015010932) #16	CSNK1G1 (ENSMMNG00015010862) #17	PPIB (ENSMMNG00015010790) #18	SNX22 (ENSMMNG00015010760) #19	SNX1 (ENSMMNG00015010702) #20	CIAO2A (ENSMMNG00015010655) #21	DAPK2 (ENSMMNG00015010615) #22	HERC1 (ENSMMNG00015010474) #23	FBXL22 (ENSMMNG00015010396) #24	USP3 (ENSMMNG00015010320) #25	ENSMMNG00015010276	CA12 (ENSMMNG00015010246) #26	APH1B (ENSMMNG00015010212) #27	RAB8B (ENSMMNG00015010188) #28	ENSMMNG00015010167 #29	LACTB (ENSMMNG00015010148) #30	TPM1 (ENSMMNG00015009957) #31	TLN2 (ENSMMNG00015009817) #33	ENSMMNG00015009789	VPS13C (ENSMMNG00015009472)	ENSMMNG00015009305	ENSMMNG00015009303
Beluga whale	MODERN SPECIES	20	PLEKHO2 (ENSDLEG00000008575) #9	PIF1 (ENSDLEG00000008546) #10	ENSDLEG00000008373	RBPMS2 (ENSDLEG00000008351) #11	OAZ2 (ENSDLEG00000008260) #12	ENSDLEG00000008230 #13	ZNF609 (ENSDLEG00000008149) #14	ENSDLEG00000008094	TRIP4 (ENSDLEG00000008070) #15	PCLAF (ENSDLEG00000008054) #16	CSNK1G1 (ENSDLEG00000007686) #17	PPIB (ENSDLEG00000007588) #18	SNX22 (ENSDLEG00000007576) #19	SNX1 (ENSDLEG00000007564) #20	FAM96A (ENSDLEG00000007545) #21	DAPK2 (ENSDLEG00000007441) #22	HERC1 (ENSDLEG00000007012) #23	FBXL22 (ENSDLEG00000006969) #24	USP3 (ENSDLEG00000006410) #25	ENSDLEG00000006340	CA12 (ENSDLEG00000006335) #26	APH1B (ENSDLEG00000006318) #27	RAB8B (ENSDLEG00000006295) #28	ENSDLEG00000006289	LACTB (ENSDLEG00000006271) #30	ENSDLEG00000006267 #31	ENSDLEG00000006265 #31	ENSDLEG00000006262 ##31	TLN2 (ENSDLEG00000002192) #33	ENSDLEG00000001077	ENSDLEG00000001065
Vaquita	MODERN SPECIES	11	SPG21 (ENSPSNG00000003632) #7	ENSPSNG00000003661 #8	PLEKHO2 (ENSPSNG00000003679) #9	PIF1 (ENSPSNG00000003695) #10	ENSPSNG00000003712	ENSPSNG00000003721 #11	ENSPSNG00000003739 #12	ZNF609 (ENSPSNG00000003759) #14	TRIP4 (ENSPSNG00000003783) #15	PCLAF (ENSPSNG00000003831) #16	CSNK1G1 (ENSPSNG00000003875) #17	PPIB (ENSPSNG00000003907) #18	ENSPSNG00000003925 #19	SNX1 (ENSPSNG00000003988) #20	CIAO2A (ENSPSNG00000004040) #21	DAPK2 (ENSPSNG00000004069) #22	HERC1 (ENSPSNG00000000120) #23	FBXL22 (ENSPSNG00000000167) #24	USP3 (ENSPSNG00000000231) #25	ENSPSNG00000000353	CA12 (ENSPSNG00000000410) #26	APH1B (ENSPSNG00000000505) #27	RAB8B (ENSPSNG00000000524) #28	ENSPSNG00000000555	LACTB (ENSPSNG00000000570) #30	TPM1 (ENSPSNG00000000684) #31	TLN2 (ENSPSNG00000000901) #33	ENSPSNG00000000941	ENSPSNG00000000958	VPS13C (ENSPSNG00000001057)	ENSPSNG00000001268
Sperm whale	MODERN SPECIES	1119															ENSPCTG00005019652	DAPK2 (ENSPCTG00005019499) #22
Blue whale	MODERN SPECIES	11	ENSBMSG00010005663 #8	PLEKHO2 (ENSBMSG00010005672) #9	PIF1 (ENSBMSG00010005687) #10	ENSBMSG00010005716	ENSBMSG00010005733 #11	OAZ2 (ENSBMSG00010005772) #12	ZNF609 (ENSBMSG00010005793) #14	TRIP4 (ENSBMSG00010005819) #15	ENSBMSG00010005839	PCLAF (ENSBMSG00010005857) #16	CSNK1G1 (ENSBMSG00010005923) #17	PPIB (ENSBMSG00010006066) #18	SNX22 (ENSBMSG00010006090) #19	SNX1 (ENSBMSG00010000037) #20	ENSBMSG00010000129 #21	DAPK2 (ENSBMSG00010000179) #22	HERC1 (ENSBMSG00010000279) #23	FBXL22 (ENSBMSG00010000348) #24	USP3 (ENSBMSG00010000419) #25	ENSBMSG00010000553	CA12 (ENSBMSG00010000588) #26	APH1B (ENSBMSG00010000650) #27	RAB8B (ENSBMSG00010000668) #28	RPS27L (ENSBMSG00010000683)	LACTB (ENSBMSG00010000701) #30	TPM1 (ENSBMSG00010000776) #31	TLN2 (ENSBMSG00010001027) #33	ENSBMSG00010001086	ENSBMSG00010001099	VPS13C (ENSBMSG00010001188)	ENSBMSG00010001281
Pecora	ANCESTRAL SPECIES	6	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Percora_a	ANCESTRAL SPECIES	8	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a
Bovidae	ANCESTRAL SPECIES	7	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00390000015789.c.b	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00390000012916.y.a.b	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h
Bovinae	ANCESTRAL SPECIES	11	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00940000154509.y.b.a.a.a	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00390000015789.c.b	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062.e #30	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.j
Bos	ANCESTRAL SPECIES	13	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00940000154509.y.b.a.a.a	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00390000015789.c.b	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.a.a.b.b	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a.w	ENSGT00390000001062.e #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00390000012916.y.a.b	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Bos_b	ANCESTRAL SPECIES	11	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00390000015789.c.b	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.a.a.b.b	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a.v	ENSGT00390000001062.e #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00390000012916.y.a.b	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Hybrid Bos Indicus	MODERN SPECIES	1	RBPMS2 (ENSBIXG00005022800) #11	ENSBIXG00005022761	OAZ2 (ENSBIXG00005022749) #12	ENSBIXG00005022714 #13	ZNF609 (ENSBIXG00005022684) #14	ENSBIXG00005005451	ENSBIXG00005022611	PCLAF (ENSBIXG00005003860) #16	ENSBIXG00005003842	CSNK1G1 (ENSBIXG00005022464) #17	SNX1 (ENSBIXG00005022359) #20	PPIB (ENSBIXG00005003793) #18	SNX22 (ENSBIXG00005022245) #19	ENSBIXG00005022228	CIAO2A (ENSBIXG00005005877) #21	DAPK2 (ENSBIXG00005022140) #22	HERC1 (ENSBIXG00005021976) #23	ENSBIXG00005003627	FBXL22 (ENSBIXG00005021495) #24	USP3 (ENSBIXG00005003618) #25	CA12 (ENSBIXG00005003586) #26	APH1B (ENSBIXG00005021158) #27	RAB8B (ENSBIXG00005021126) #28	RPS27L (ENSBIXG00005021094)	ENSBIXG00005021042 #30	ENSBIXG00005021018	TPM1 (ENSBIXG00005020956) #31	ENSBIXG00005020564	TLN2 (ENSBIXG00005020508) #33	ENSBIXG00005003454	ENSBIXG00005020414
Cow	MODERN SPECIES	1	PTGDR (ENSBTAG00000006703)	PLEKHO2 (ENSBTAG00000008411) #9	PIF1 (ENSBTAG00000007638) #10	RBPMS2 (ENSBTAG00000011037) #11	OAZ2 (ENSBTAG00000015806) #12	ZNF609 (ENSBTAG00000015808) #14	TRIP4 (ENSBTAG00000014493) #15	ENSBTAG00000049725	PCLAF (ENSBTAG00000039462) #16	CSNK1G1 (ENSBTAG00000016823) #17	ENSBTAG00000049412	PPIB (ENSBTAG00000016822) #18	SNX22 (ENSBTAG00000016821) #19	SNX1 (ENSBTAG00000002014) #20	CIAO2A (ENSBTAG00000002012) #21	DAPK2 (ENSBTAG00000011820) #22	HERC1 (ENSBTAG00000053677) #23	ENSBTAG00000052707	ENSBTAG00000051076	ENSBTAG00000054388	ENSBTAG00000050908	ENSBTAG00000019474 #23	FBXL22 (ENSBTAG00000008807) #24	USP3 (ENSBTAG00000008805) #25	CA12 (ENSBTAG00000019390) #26	APH1B (ENSBTAG00000010641) #27	RAB8B (ENSBTAG00000011146) #28	RPS27L (ENSBTAG00000012898)	LACTB (ENSBTAG00000017373) #30	TPM1 (ENSBTAG00000005373) #31	ENSBTAG00000040590
Bos_a	ANCESTRAL SPECIES	53	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.b.b.a.b.b.a.a	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00940000154509.y.b.a.a.a	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.a.a.b.b	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a.w	ENSGT00390000001062.e #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00390000012916.y.a.b	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Domestic yak	MODERN SPECIES	2	ENSBGRG00000023030	PLEKHO2 (ENSBGRG00000023055) #9	PIF1 (ENSBGRG00000023115) #10	RBPMS2 (ENSBGRG00000023193) #11	OAZ2 (ENSBGRG00000023251) #12	ZNF609 (ENSBGRG00000023364) #14	ENSBGRG00000023399	TRIP4 (ENSBGRG00000023426) #15	PCLAF (ENSBGRG00000023565) #16	CSNK1G1 (ENSBGRG00000023776) #17	PPIB (ENSBGRG00000024663) #18	SNX22 (ENSBGRG00000024686) #19	ENSBGRG00000024710	SNX1 (ENSBGRG00000024722) #20	CIAO2A (ENSBGRG00000024771) #21	DAPK2 (ENSBGRG00000024836) #22	HERC1 (ENSBGRG00000025007) #23	FBXL22 (ENSBGRG00000025878) #24	USP3 (ENSBGRG00000025898) #25	CA12 (ENSBGRG00000026023) #26	APH1B (ENSBGRG00000003624) #27	RAB8B (ENSBGRG00000003715) #28	ENSBGRG00000003772	LACTB (ENSBGRG00000003854) #30	ENSBGRG00000003930	ENSBGRG00000003954	ENSBGRG00000003979 #31	ENSBGRG00000004293	TLN2 (ENSBGRG00000004335) #33	ENSBGRG00000004627	ENSBGRG00000004649
Wild yak	MODERN SPECIES	658	PTGDR (ENSBMUG00000004918)	PLEKHO2 (ENSBMUG00000004851) #9	PIF1 (ENSBMUG00000004819) #10	RBPMS2 (ENSBMUG00000004804) #11	OAZ2 (ENSBMUG00000004795) #12	ENSBMUG00000004747	ZNF609 (ENSBMUG00000004718) #14	ENSBMUG00000004704	TRIP4 (ENSBMUG00000004690) #15	PCLAF (ENSBMUG00000004667) #16	CSNK1G1 (ENSBMUG00000004474) #17	PPIB (ENSBMUG00000004309) #18	SNX22 (ENSBMUG00000004300) #19	SNX1 (ENSBMUG00000004277) #20	CIAO2A (ENSBMUG00000004234) #21	DAPK2 (ENSBMUG00000004177) #22	HERC1 (ENSBMUG00000004110) #23	FBXL22 (ENSBMUG00000004031) #24	USP3 (ENSBMUG00000003861) #25	CA12 (ENSBMUG00000003495) #26	APH1B (ENSBMUG00000003435) #27	RAB8B (ENSBMUG00000003418) #28	ENSBMUG00000003407	LACTB (ENSBMUG00000003387) #30
Caprinae	ANCESTRAL SPECIES	11	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00390000015789.c.b	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00390000012916.y.a.b	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.g	ENSGT00940000162206.h
Rambouillet Sheep	MODERN SPECIES	23	ENSOARG00020023633	ENSOARG00020023643	PTGDR (ENSOARG00020023654)	PLEKHO2 (ENSOARG00020023668) #9	PIF1 (ENSOARG00020023726) #10	RBPMS2 (ENSOARG00020023782) #11	OAZ2 (ENSOARG00020023813) #12	ZNF609 (ENSOARG00020023856) #14	TRIP4 (ENSOARG00020023887) #15	PCLAF (ENSOARG00020023913) #16	CSNK1G1 (ENSOARG00020024000) #17	PPIB (ENSOARG00020024684) #18	SNX22 (ENSOARG00020007311) #19	SNX1 (ENSOARG00020007347) #20	ENSOARG00020007473 #21	DAPK2 (ENSOARG00020007501) #22	HERC1 (ENSOARG00020007683) #23	FBXL22 (ENSOARG00020007949) #24	USP3 (ENSOARG00020008050) #25	APH1B (ENSOARG00020008742) #27	RAB8B (ENSOARG00020008761) #28	RPS27L (ENSOARG00020008837)	LACTB (ENSOARG00020008870) #30	TPM1 (ENSOARG00020009011) #31	TLN2 (ENSOARG00020009618) #33	ENSOARG00020010758	VPS13C (ENSOARG00020011169)	RORA (ENSOARG00020019090)	ICE2 (ENSOARG00020019537)	ANXA2 (ENSOARG00020019713)	FOXB1 (ENSOARG00020019859)
Siberian musk deer	MODERN SPECIES	367	PTGDR (ENSMMSG00000015794)	ENSMMSG00000015839	ENSMMSG00000015854	PLEKHO2 (ENSMMSG00000015873) #9	PIF1 (ENSMMSG00000015904) #10	ENSMMSG00000015991 #11	OAZ2 (ENSMMSG00000016048) #12	ZNF609 (ENSMMSG00000016094) #14	TRIP4 (ENSMMSG00000016140) #15	ENSMMSG00000016175 #16	CSNK1G1 (ENSMMSG00000016321) #17	PPIB (ENSMMSG00000016470) #18	SNX22 (ENSMMSG00000016511) #19	SNX1 (ENSMMSG00000016577) #20	ENSMMSG00000016708 #21	DAPK2 (ENSMMSG00000016817) #22	HERC1 (ENSMMSG00000016958) #23	FBXL22 (ENSMMSG00000017073) #24	USP3 (ENSMMSG00000017104) #25	CA12 (ENSMMSG00000017392) #26	APH1B (ENSMMSG00000017507) #27	RAB8B (ENSMMSG00000017553) #28	RPS27L (ENSMMSG00000017596)	LACTB (ENSMMSG00000017653) #30	ENSMMSG00000017695
Camelidae	ANCESTRAL SPECIES	83	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25
Arabian camel	MODERN SPECIES	32	SPG21 (ENSCDRG00005001313) #7	ANKDD1A (ENSCDRG00005001275) #8	PLEKHO2 (ENSCDRG00005001250) #9	PIF1 (ENSCDRG00005001226) #10	RBPMS2 (ENSCDRG00005001201) #11	OAZ2 (ENSCDRG00005001180) #12	ENSCDRG00005001164 #13	ZNF609 (ENSCDRG00005001141) #14	TRIP4 (ENSCDRG00005001105) #15	PCLAF (ENSCDRG00005001066) #16	CSNK1G1 (ENSCDRG00005000938) #17	PPIB (ENSCDRG00005000872) #18	SNX22 (ENSCDRG00005000848) #19	SNX1 (ENSCDRG00005000795) #20	CIAO2A (ENSCDRG00005000749) #21	DAPK2 (ENSCDRG00005000708) #22	ENSCDRG00005000684	HERC1 (ENSCDRG00005000577) #23	FBXL22 (ENSCDRG00005000551) #24	ENSCDRG00005000539 #25	ENSCDRG00005000513	ENSCDRG00005000501
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Carnivora	ANCESTRAL SPECIES		ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00940000164336 #29	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00940000164336 #29	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00930000152855	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00940000164336 #29	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.i	ENSGT00930000152855	ENSGT00940000162206.j	ENSGT00950000183083.a.d.a
leopard	MODERN SPECIES	7	ANKDD1A (ENSPPRG00000021337) #8	PLEKHO2 (ENSPPRG00000018753) #9	PIF1 (ENSPPRG00000018031) #10	RBPMS2 (ENSPPRG00000014944) #11	OAZ2 (ENSPPRG00000014549) #12	ENSPPRG00000014194 #12	ENSPPRG00000014718 #13	ZNF609 (ENSPPRG00000013974) #14	TRIP4 (ENSPPRG00000013668) #15	PCLAF (ENSPPRG00000013231) #16	CSNK1G1 (ENSPPRG00000012107) #17	PPIB (ENSPPRG00000008423) #18	SNX22 (ENSPPRG00000008270) #19	SNX1 (ENSPPRG00000008151) #20	CIAO2A (ENSPPRG00000007232) #21	DAPK2 (ENSPPRG00000007000) #22	HERC1 (ENSPPRG00000006219) #23	FBXL22 (ENSPPRG00000004585) #24	USP3 (ENSPPRG00000004518) #25	CA12 (ENSPPRG00000002981) #26	APH1B (ENSPPRG00000002047) #27	RAB8B (ENSPPRG00000000194) #28	ENSPPRG00000023087 #29	LACTB (ENSPPRG00000023298) #30	TPM1 (ENSPPRG00000023409) #31	ENSPPRG00000023820 ##31	TLN2 (ENSPPRG00000024152) #33	ENSPPRG00000024704	ENSPPRG00000024744	ENSPPRG00000014483	VPS13C (ENSPPRG00000024819)
lion	MODERN SPECIES	6	MTFMT (ENSPLOG00000011004)	SPG21 (ENSPLOG00000011106) #7	ANKDD1A (ENSPLOG00000011255) #8	PLEKHO2 (ENSPLOG00000011538) #9	PIF1 (ENSPLOG00000011589) #10	RBPMS2 (ENSPLOG00000011704) #11	OAZ2 (ENSPLOG00000011762) #12	ZNF609 (ENSPLOG00000011829) #14	TRIP4 (ENSPLOG00000011893) #15	PCLAF (ENSPLOG00000012084) #16	CSNK1G1 (ENSPLOG00000012225) #17	PPIB (ENSPLOG00000012340) #18	SNX22 (ENSPLOG00000012383) #19	SNX1 (ENSPLOG00000012451) #20	CIAO2A (ENSPLOG00000012765) #21	DAPK2 (ENSPLOG00000012895) #22	HERC1 (ENSPLOG00000013050) #23	FBXL22 (ENSPLOG00000013600) #24	USP3 (ENSPLOG00000013694) #25	CA12 (ENSPLOG00000014410) #26	APH1B (ENSPLOG00000014734) #27	ENSPLOG00000014920	RAB8B (ENSPLOG00000014958) #28	ENSPLOG00000014988 #29	LACTB (ENSPLOG00000015093) #30	TPM1 (ENSPLOG00000015292) #31	TLN2 (ENSPLOG00000015663) #33	ENSPLOG00000016368	ENSPLOG00000016384	VPS13C (ENSPLOG00000016750)	RORA (ENSPLOG00000019217)
Tiger	MODERN SPECIES	204	MTFMT (ENSPTIG00000021473)	SPG21 (ENSPTIG00000021286) #7	ANKDD1A (ENSPTIG00000020864) #8	PLEKHO2 (ENSPTIG00000020432) #9	PIF1 (ENSPTIG00000018479) #10	RBPMS2 (ENSPTIG00000017879) #11	ENSPTIG00000017213 #12	ZNF609 (ENSPTIG00000015732) #14	TRIP4 (ENSPTIG00000014502) #15	PCLAF (ENSPTIG00000011600) #16	CSNK1G1 (ENSPTIG00000007978) #17	PPIB (ENSPTIG00000007537) #18	SNX22 (ENSPTIG00000006889) #19	SNX1 (ENSPTIG00000000317) #20	CIAO2A (ENSPTIG00000021384) #21	DAPK2 (ENSPTIG00000020724) #22	HERC1 (ENSPTIG00000016505) #23	ENSPTIG00000014494 #24	USP3 (ENSPTIG00000010649) #25	CA12 (ENSPTIG00000008179) #26	APH1B (ENSPTIG00000007498) #27	ENSPTIG00000007292	RAB8B (ENSPTIG00000005636) #28	ENSPTIG00000000664	LACTB (ENSPTIG00000021953) #30	TPM1 (ENSPTIG00000020687) #31	TLN2 (ENSPTIG00000013165) #33	VPS13C (ENSPTIG00000020414)	RORA (ENSPTIG00000015398)	ICE2 (ENSPTIG00000013570)	ANXA2 (ENSPTIG00000011256)
Cat	MODERN SPECIES	237	MTFMT (ENSFCAG00000011455)	SPG21 (ENSFCAG00000011454) #7	ANKDD1A (ENSFCAG00000011452) #8	PLEKHO2 (ENSFCAG00000040159) #9	PIF1 (ENSFCAG00000011335) #10	RBPMS2 (ENSFCAG00000032451) #11	OAZ2 (ENSFCAG00000011332) #12	ZNF609 (ENSFCAG00000011328) #14	TRIP4 (ENSFCAG00000010618) #15	PCLAF (ENSFCAG00000039663) #16	CSNK1G1 (ENSFCAG00000004183) #17	PPIB (ENSFCAG00000033734) #18	SNX22 (ENSFCAG00000004182) #19	SNX1 (ENSFCAG00000004179) #20	CIAO2A (ENSFCAG00000046793) #21	DAPK2 (ENSFCAG00000004177) #22	HERC1 (ENSFCAG00000008990) #23	FBXL22 (ENSFCAG00000046790) #24	USP3 (ENSFCAG00000028788) #25	CA12 (ENSFCAG00000029058) #26	APH1B (ENSFCAG00000040244) #27	ENSFCAG00000053373	ENSFCAG00000053387	RAB8B (ENSFCAG00000031584) #28	ENSFCAG00000033932 #29	LACTB (ENSFCAG00000027796) #30	TPM1 (ENSFCAG00000037855) #31	TLN2 (ENSFCAG00000007306) #33	ENSFCAG00000040967	VPS13C (ENSFCAG00000026881)	RORA (ENSFCAG00000013642)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT01070000253911
Canidae	ANCESTRAL SPECIES	15	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921.b	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT01070000253911
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00390000003248.a.a.a.b	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921.b	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT01070000253911	ENSGT00940000157387
Dog	MODERN SPECIES	23	SPG21 (ENSCAFG00845024150) #7	ANKDD1A (ENSCAFG00845023984) #8	PLEKHO2 (ENSCAFG00845023843) #9	PIF1 (ENSCAFG00845023739) #10	ENSCAFG00845023679	RBPMS2 (ENSCAFG00845023573) #11	OAZ2 (ENSCAFG00845023459) #12	ZNF609 (ENSCAFG00845023283) #14	TRIP4 (ENSCAFG00845023208) #15	PCLAF (ENSCAFG00845023122) #16	CSNK1G1 (ENSCAFG00845022773) #17	PPIB (ENSCAFG00845022646) #18	ENSCAFG00845022581 #19	SNX1 (ENSCAFG00845022186) #20	CIAO2A (ENSCAFG00845022079) #21	DAPK2 (ENSCAFG00845021918) #22	HERC1 (ENSCAFG00845021555) #23	FBXL22 (ENSCAFG00845021485) #24	USP3 (ENSCAFG00845021124) #25	CA12 (ENSCAFG00845020844) #26	APH1B (ENSCAFG00845020653) #27	RAB8B (ENSCAFG00845020576) #28	RPS27L (ENSCAFG00845020453)	LACTB (ENSCAFG00845020386) #30	TPM1 (ENSCAFG00845019944) #31	TLN2 (ENSCAFG00845019529) #33	ENSCAFG00845019202	VPS13C (ENSCAFG00845018323)	ENSCAFG00845018067	RORA (ENSCAFG00845017841)	ICE2 (ENSCAFG00845017491)
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT01070000253911
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.j.mb
American mink	MODERN SPECIES	46	SPG21 (ENSNVIG00000017776) #7	ANKDD1A (ENSNVIG00000017875) #8	PKHO2 (ENSNVIG00000017954) #9	PIF1 (ENSNVIG00000018009) #10	RBPMS2 (ENSNVIG00000018045) #11	OAZ2 (ENSNVIG00000018100) #12	ZNF609 (ENSNVIG00000018141) #14	ENSNVIG00000018166	PAF (ENSNVIG00000018189) #16	KC1G1 (ENSNVIG00000018229) #17	ENSNVIG00000018254	PPIB (ENSNVIG00000018257) #18	SNX22 (ENSNVIG00000018265) #19	SNX1 (ENSNVIG00000018288) #20	CIAO2A (ENSNVIG00000018334) #21	DAPK2 (ENSNVIG00000018354) #22	HERC1 (ENSNVIG00000018418) #23	ENSNVIG00000018479 #24	UBP3 (ENSNVIG00000018489) #25	CA12 (ENSNVIG00000018640) #26	APH1B (ENSNVIG00000018717) #27	RAB8B (ENSNVIG00000018748) #28	ENSNVIG00000018758 #29	LACTB (ENSNVIG00000018777) #30	TPM1 (ENSNVIG00000018804) #31	ENSNVIG00000018989	TLN2 (ENSNVIG00000019004) #33	ENSNVIG00000019176	ENSNVIG00000019183	ENSNVIG00000019200	VPS13C (ENSNVIG00000019284)
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007.p.b #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699.f #33	ENSGT00950000183083.a.d.a	ENSGT01070000253911	ENSGT00940000157387
Giant Panda	MODERN SPECIES	15	MTFMT (ENSAMEG00000002756)	SPG21 (ENSAMEG00000002738) #7	ANKDD1A (ENSAMEG00000002723) #8	PLEKHO2 (ENSAMEG00000029578) #9	PIF1 (ENSAMEG00000002688) #10	ENSAMEG00000002664 #11	OAZ2 (ENSAMEG00000002648) #12	ZNF609 (ENSAMEG00000002630) #14	TRIP4 (ENSAMEG00000002591) #15	PCLAF (ENSAMEG00000002586) #16	CSNK1G1 (ENSAMEG00000002545) #17	ENSAMEG00000002525 #18	SNX22 (ENSAMEG00000002516) #19	SNX1 (ENSAMEG00000002465) #20	CIAO2A (ENSAMEG00000002448) #21	DAPK2 (ENSAMEG00000002421) #22	HERC1 (ENSAMEG00000002389) #23	FBXL22 (ENSAMEG00000002387) #24	USP3 (ENSAMEG00000002345) #25	CA12 (ENSAMEG00000002328) #26	APH1B (ENSAMEG00000002312) #27	ENSAMEG00000031452	RAB8B (ENSAMEG00000002292) #28	RPS27L (ENSAMEG00000007270)	LACTB (ENSAMEG00000007262) #30	ENSAMEG00000007224 #31	TLN2 (ENSAMEG00000012004) #33	VPS13C (ENSAMEG00000017363)	ENSAMEG00000017453	RORA (ENSAMEG00000008017)	ICE2 (ENSAMEG00000008039)
Ursus	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Polar bear	MODERN SPECIES	455	SH3GL1 (ENSUMAG00000007676)	MPND (ENSUMAG00000007663)	STAP2 (ENSUMAG00000007652)	FSD1 (ENSUMAG00000007632)	ENSUMAG00000007621	SHD (ENSUMAG00000007615)	ENSUMAG00000007611	YJU2 (ENSUMAG00000007607)	ENSUMAG00000007603	ENSUMAG00000007602	SIRT6 (ENSUMAG00000007575)	CREB3L3 (ENSUMAG00000007566)	ENSUMAG00000007513	PIAS4 (ENSUMAG00000007484)	EEF2 (ENSUMAG00000007474)	ENSUMAG00000007459 #22	ATCAY (ENSUMAG00000007452)	ENSUMAG00000007447	ENSUMAG00000007440	MATK (ENSUMAG00000007427)	ENSUMAG00000007421	MRPL54 (ENSUMAG00000007416)	PIP5K1C (ENSUMAG00000007390)	ENSUMAG00000007385	ENSUMAG00000007383	ENSUMAG00000007381	MFSD12 (ENSUMAG00000007358)	TEKTIP1 (ENSUMAG00000007354)	FZR1 (ENSUMAG00000007307)	ENSUMAG00000007296	NFIC (ENSUMAG00000007265)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT01030000234542.b.a.a.b.a.b.l ##31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a
Equus	ANCESTRAL SPECIES	4	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT01030000234542.b.a.a.b.a.b.l ##31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Horse	MODERN SPECIES		SPG21 (ENSECAG00000012886) #7	ANKDD1A (ENSECAG00000017284) #8	PLEKHO2 (ENSECAG00000022172) #9	PIF1 (ENSECAG00000005316) #10	RBPMS2 (ENSECAG00000015345) #11	ZNF609 (ENSECAG00000024130) #14	OAZ2 (ENSECAG00000018627) #12	TRIP4 (ENSECAG00000024689) #15	ENSECAG00000026891 #16	CSNK1G1 (ENSECAG00000006597) #17	ENSECAG00000052585	PPIB (ENSECAG00000017164) #18	SNX22 (ENSECAG00000017605) #19	SNX1 (ENSECAG00000019019) #20	CIAO2A (ENSECAG00000010303) #21	DAPK2 (ENSECAG00000012621) #22	HERC1 (ENSECAG00000022635) #23	ENSECAG00000022138	ENSECAG00000060278	FBXL22 (ENSECAG00000016041) #24	USP3 (ENSECAG00000016660) #25	CA12 (ENSECAG00000017217) #26	APH1B (ENSECAG00000001985) #27	RAB8B (ENSECAG00000036923) #28	RPS27L (ENSECAG00000013269)	LACTB (ENSECAG00000053700) #30	TPM1 (ENSECAG00000014949) #31	ENSECAG00000050273 ##31	TLN2 (ENSECAG00000020488) #33	ENSECAG00000052463	ENSECAG00000035298
Donkey	MODERN SPECIES	11	SPG21 (ENSEASG00005006508) #7	ANKDD1A (ENSEASG00005006509) #8	PLEKHO2 (ENSEASG00005033707) #9	PIF1 (ENSEASG00005006515) #10	RBPMS2 (ENSEASG00005006523) #11	OAZ2 (ENSEASG00005024051) #12	ZNF609 (ENSEASG00005006535) #14	TRIP4 (ENSEASG00005006538) #15	ENSEASG00005006541 #16	CSNK1G1 (ENSEASG00005006542) #17	ENSEASG00005033915	PPIB (ENSEASG00005024211) #18	SNX22 (ENSEASG00005036797) #19	SNX1 (ENSEASG00005006579) #20	CIAO2A (ENSEASG00005036756) #21	DAPK2 (ENSEASG00005006626) #22	ENSEASG00005006635	HERC1 (ENSEASG00005006663) #23	FBXL22 (ENSEASG00005031318) #24	USP3 (ENSEASG00005006813) #25	CA12 (ENSEASG00005005325) #26	APH1B (ENSEASG00005005328) #27	ENSEASG00005005334	RAB8B (ENSEASG00005038003) #28	RPS27L (ENSEASG00005031631)	LACTB (ENSEASG00005005348) #30	ENSEASG00005031100 #31	ENSEASG00005024602 ##31	TLN2 (ENSEASG00005005435) #33	ENSEASG00005032522	ENSEASG00005032205
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00930000152855	ENSGT00940000163765	ENSGT00950000183083.a.d.a
Greater horseshoe bat	MODERN SPECIES	24	SPG21 (ENSRFEG00010007949) #7	ANKDD1A (ENSRFEG00010008103) #8	PLEKHO2 (ENSRFEG00010008395) #9	PIF1 (ENSRFEG00010008484) #10	RBPMS2 (ENSRFEG00010008568) #11	OAZ2 (ENSRFEG00010008661) #12	ENSRFEG00010008724 #13	ZNF609 (ENSRFEG00010008748) #14	TRIP4 (ENSRFEG00010008797) #15	PCLAF (ENSRFEG00010008826) #16	CSNK1G1 (ENSRFEG00010008947) #17	PPIB (ENSRFEG00010009072) #18	SNX22 (ENSRFEG00010009114) #19	SNX1 (ENSRFEG00010009203) #20	CIAO2A (ENSRFEG00010009329) #21	DAPK2 (ENSRFEG00010009400) #22	ENSRFEG00010009525	ENSRFEG00010009583 #23	FBXL22 (ENSRFEG00010009644) #24	USP3 (ENSRFEG00010009665) #25	CA12 (ENSRFEG00010009883) #26	APH1B (ENSRFEG00010009953) #27	RAB8B (ENSRFEG00010010042) #28	ENSRFEG00010010077	LACTB (ENSRFEG00010010152) #30	ENSRFEG00010010201	TPM1 (ENSRFEG00010010379) #31	ENSRFEG00010011385	TLN2 (ENSRFEG00010011447) #33	ENSRFEG00010011581	ENSRFEG00010011606
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Tenrec	MODERN SPECIES	6064																ENSETEG00000002966 #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00390000007209.l	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Opossum	MODERN SPECIES		SPG21 (ENSMODG00000010438) #7	ANKDD1A (ENSMODG00000010452) #8	ENSMODG00000010455	PLEKHO2 (ENSMODG00000010466) #9	PIF1 (ENSMODG00000010476) #10	ENSMODG00000010487 #11	OAZ2 (ENSMODG00000010496) #12	ZNF609 (ENSMODG00000010510) #14	TRIP4 (ENSMODG00000010743) #15	PCLAF (ENSMODG00000037309) #16	CSNK1G1 (ENSMODG00000010802) #17	PPIB (ENSMODG00000010819) #18	SNX22 (ENSMODG00000010831) #19	SNX1 (ENSMODG00000010898) #20	CIAO2A (ENSMODG00000010909) #21	DAPK2 (ENSMODG00000010926) #22	HERC1 (ENSMODG00000010971) #23	FBXL22 (ENSMODG00000046180) #24	USP3 (ENSMODG00000011011) #25	CA12 (ENSMODG00000011032) #26	APH1B (ENSMODG00000038735) #27	RAB8B (ENSMODG00000011048) #28	ENSMODG00000011078	RPS27L (ENSMODG00000042701)	LACTB (ENSMODG00000011098) #30	TPM1 (ENSMODG00000039857) #31	TLN2 (ENSMODG00000011273) #33	ENSMODG00000011283	ENSMODG00000049046	ENSMODG00000024628	VPS13C (ENSMODG00000011326)
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00390000007209.l	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00390000007209.l	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.g
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00390000007209.l	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252.a.a.a #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.g
koala	MODERN SPECIES		ANKDD1A (ENSPCIG00000032384) #8	ENSPCIG00000029444	PLEKHO2 (ENSPCIG00000029445) #9	PIF1 (ENSPCIG00000029446) #10	RBPMS2 (ENSPCIG00000029447) #11	OAZ2 (ENSPCIG00000029448) #12	ZNF609 (ENSPCIG00000029449) #14	TRIP4 (ENSPCIG00000029450) #15	ENSPCIG00000029451 #16	CSNK1G1 (ENSPCIG00000030780) #17	ENSPCIG00000029452	PPIB (ENSPCIG00000021286) #18	SNX22 (ENSPCIG00000021287) #19	SNX1 (ENSPCIG00000029454) #20	ENSPCIG00000029455 #21	DAPK2 (ENSPCIG00000029457) #22	HERC1 (ENSPCIG00000033481) #23	FBXL22 (ENSPCIG00000003757) #24	USP3 (ENSPCIG00000003759) #25
Tasmanian devil	MODERN SPECIES	1	MTFMT (ENSSHAG00000012265)	ANKDD1A (ENSSHAG00000009607) #8	ENSSHAG00000009145	PLEKHO2 (ENSSHAG00000030172) #9	PIF1 (ENSSHAG00000008322) #10	RBPMS2 (ENSSHAG00000031923) #11	OAZ2 (ENSSHAG00000025120) #12	ZNF609 (ENSSHAG00000004069) #14	TRIP4 (ENSSHAG00000000040) #15	PCLAF (ENSSHAG00000030585) #16	CSNK1G1 (ENSSHAG00000018581) #17	PPIB (ENSSHAG00000024480) #18	SNX22 (ENSSHAG00000018564) #19	SNX1 (ENSSHAG00000018508) #20	CIAO2A (ENSSHAG00000023450) #21	DAPK2 (ENSSHAG00000018240) #22	HERC1 (ENSSHAG00000017933) #23	FBXL22 (ENSSHAG00000020700) #24	USP3 (ENSSHAG00000023305) #25	ENSSHAG00000022554	CA12 (ENSSHAG00000017499) #26	APH1B (ENSSHAG00000029286) #27	RAB8B (ENSSHAG00000024710) #28	ENSSHAG00000022073	LACTB (ENSSHAG00000017142) #30	TPM1 (ENSSHAG00000020913) #31	TLN2 (ENSSHAG00000015834) #33	ENSSHAG00000025298	ENSSHAG00000022906	VPS13C (ENSSHAG00000012649)	RORA (ENSSHAG00000015734)
Platypus	MODERN SPECIES	16	MYO9A (ENSOANG00000013363)	NR2E3 (ENSOANG00000003155)	ENSOANG00000036588	CPEB1 (ENSOANG00000013361)	RPS17 (ENSOANG00000013360)	RBPMS2 (ENSOANG00000044956) #11	OAZ2 (ENSOANG00000013359) #12	ZNF609 (ENSOANG00000044888) #14	TRIP4 (ENSOANG00000013357) #15	ENSOANG00000013356 #16	CSNK1G1 (ENSOANG00000013355) #17	PPIB (ENSOANG00000013354) #18	ENSOANG00000041082	SNX1 (ENSOANG00000020925) #20	CIAO2A (ENSOANG00000009232) #21	DAPK2 (ENSOANG00000048356) #22	HERC1 (ENSOANG00000011146) #23	FBXL22 (ENSOANG00000049762) #24	USP3 (ENSOANG00000011148) #25	ENSOANG00000039721	CA12 (ENSOANG00000041610) #26	APH1B (ENSOANG00000011151) #27	RAB8B (ENSOANG00000011153) #28	RPS27L (ENSOANG00000041300)	LACTB (ENSOANG00000014411) #30	TPM1 (ENSOANG00000011217) #31	TLN2 (ENSOANG00000002149) #33	VPS13C (ENSOANG00000002874)	RORA (ENSOANG00000012345)	ICE2 (ENSOANG00000012343)	ANXA2 (ENSOANG00000012341)
Sauria	ANCESTRAL SPECIES	20	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00990000205656	ENSGT00940000159237	ENSGT01000000215054	ENSGT00940000160088	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261	ENSGT00940000153487.b.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000154779.a.a	ENSGT00940000153424.a.a.d #22	ENSGT00940000159842	ENSGT00940000158364	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00940000159004	ENSGT00960000189486	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00990000205656	ENSGT00940000159237	ENSGT00940000160088	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261	ENSGT00940000153487.b.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000154779.a.a	ENSGT00940000153424.a.a.d #22	ENSGT00940000159842	ENSGT00940000158364	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Cryptodira	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Abingdon island giant tortoise	MODERN SPECIES		STAP2 (ENSCABG00000001769)	FSD1 (ENSCABG00000001768)	ENSCABG00000001765	SHD (ENSCABG00000001762)	YJU2 (ENSCABG00000001760)	EBI3 (ENSCABG00000001755)	ENSCABG00000001754	ENSCABG00000001752	SIRT6 (ENSCABG00000001750)	ENSCABG00000001748	CREB3L3 (ENSCABG00000001744)	MAP2K2 (ENSCABG00000001574)	ZBTB7A (ENSCABG00000001566)	PIAS4 (ENSCABG00000001521)	EEF2 (ENSCABG00000001509)	ENSCABG00000001506 #22	ENSCABG00000001505	ATCAY (ENSCABG00000001480)	ENSCABG00000001475	NRTN (ENSCABG00000001472)	DUS3L (ENSCABG00000001466)	PRR22 (ENSCABG00000001462)	ENSCABG00000001457	RFX2 (ENSCABG00000000813)	ACSBG2 (ENSCABG00000000769)	MLLT1 (ENSCABG00000000749)	ACER1 (ENSCABG00000000748)	ENSCABG00000000744	ZNF414 (ENSCABG00000000742)	MYO1F (ENSCABG00000000392)	ADAMTS10 (ENSCABG00000000218)
Archosauria	ANCESTRAL SPECIES	16	ENSGT00940000159004	ENSGT00960000189486	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00990000205656	ENSGT00940000159237	ENSGT00940000160088	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261	ENSGT00940000153487.b.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000154779.a.a	ENSGT00940000153424.a.a.d #22	ENSGT00940000159842	ENSGT00940000158364	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Aves	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00500000044945.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000162487	ENSGT00390000002629	ENSGT00940000155916.h	ENSGT00940000155916.g	ENSGT00940000160191	ENSGT00530000063841.b	ENSGT00940000159440	ENSGT00950000186319	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000153424.a.a.d #22	ENSGT00940000159842	ENSGT00940000158364	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00960000189545	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Japanese quail	MODERN SPECIES	20	NCLN (ENSCJPG00005009756)	ENSCJPG00005009758	CELF5 (ENSCJPG00005009760)	HSD11B1L (ENSCJPG00005009762)	MICOS13 (ENSCJPG00005009764)	ENSCJPG00005009765	ENSCJPG00005009767	FSD1 (ENSCJPG00005009773)	ENSCJPG00005009774	SHD (ENSCJPG00005009775)	YJU2 (ENSCJPG00005009776)	ZBTB7A (ENSCJPG00005009777)	ENSCJPG00005009778	PIAS4 (ENSCJPG00005009779)	EEF2 (ENSCJPG00005009780)	ENSCJPG00005009782 #22	NMRK2 (ENSCJPG00005009783)	ATCAY (ENSCJPG00005009817)	ENSCJPG00005009818	NRTN (ENSCJPG00005009820)	DUS3L (ENSCJPG00005009823)	RFX2 (ENSCJPG00005009826)	ACSBG2 (ENSCJPG00005009830)	MLLT1 (ENSCJPG00005009832)	ACER1 (ENSCJPG00005009833)	ENSCJPG00005009834	ZNF414 (ENSCJPG00005009835)	MYO1F (ENSCJPG00005009837)	ADAMTS10 (ENSCJPG00005009838)	ZAP70 (ENSCJPG00005009839)	NFILZ (ENSCJPG00005009841)
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000162487	ENSGT00390000002629	ENSGT00940000155916.h	ENSGT00940000155916.g	ENSGT00940000160191	ENSGT00530000063841.b	ENSGT00940000159440	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000153424.a.a.d #22	ENSGT00940000159842	ENSGT00940000158364	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00960000189545	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Turkey	MODERN SPECIES	3	ENSMGAG00000004364	ENSMGAG00000018001	ENSMGAG00000004247 #33	ENSMGAG00000017595 ##31	ENSMGAG00000004207 #31	ENSMGAG00000016121	ENSMGAG00000004190 #30	ENSMGAG00000020980	RAB8B (ENSMGAG00000004169) #28	ENSMGAG00000004066 #26	ENSMGAG00000004108 #25	ENSMGAG00000022596 #24	ENSMGAG00000018217	ENSMGAG00000016858	ENSMGAG00000004006 #23	ENSMGAG00000003962 #22	ENSMGAG00000003929	ENSMGAG00000003899	ENSMGAG00000003806	ENSMGAG00000003861	ENSMGAG00000018857	ENSMGAG00000003766	ENSMGAG00000003789	CRABP1 (ENSMGAG00000022948)	ENSMGAG00000003688	ENSMGAG00000003685	ENSMGAG00000003682	ENSMGAG00000003578	ENSMGAG00000003610	CHRNB4 (ENSMGAG00000003559)	ENSMGAG00000003497
Chicken	DUPLICATION
Chicken	MODERN SPECIES	1	NRG4 (ENSGALG00010024121)	FBXO22 (ENSGALG00010024135)	UBE2Q2 (ENSGALG00010024143)	CHRNB4 (ENSGALG00010024157)	CHRNA3 (ENSGALG00010024167)	CHRNA5 (ENSGALG00010024185)	PSMA4 (ENSGALG00010024195)	IREB2 (ENSGALG00010024201)	CRABP1 (ENSGALG00010024214)	WDR61 (ENSGALG00010024240)	DNAJA4 (ENSGALG00010024258)	ACSBG1 (ENSGALG00010024274)	IDH3A (ENSGALG00010024322)	CIB2 (ENSGALG00010024377)	TBC1D2B (ENSGALG00010024391)	DAPK2 (ENSGALG00010024421) #22	HERC1 (ENSGALG00010024437) #23	FBXL22 (ENSGALG00010024463) #24	USP3 (ENSGALG00010024482) #25	CA12 (ENSGALG00010024499) #26	RAB8B (ENSGALG00010024506) #28	RPS27L (ENSGALG00010024508)	LACTB (ENSGALG00010024517) #30	TPM1 (ENSGALG00010024570) #31	TLN2 (ENSGALG00010024582) #33	C2CD4A (ENSGALG00010024601)	VPS13C (ENSGALG00010024618)	RORA (ENSGALG00010024646)	ICE2 (ENSGALG00010024663)	ANXA2 (ENSGALG00010024693)	FOXB1 (ENSGALG00010024704)
Chicken	MODERN SPECIES	20	CELF5 (ENSGALG00010027133)	HSD11B1L (ENSGALG00010027139)	C19orf70 (ENSGALG00010027151)	SAFB (ENSGALG00010027163)	ENSGALG00010027176	MPND (ENSGALG00010027184)	ENSGALG00010027189	FSD1 (ENSGALG00010028415)	ENSGALG00010028417	SHD (ENSGALG00010028506)	CCDC94 (ENSGALG00010027116)	ZBTB7A (ENSGALG00010028421)	ENSGALG00010028424	PIAS4 (ENSGALG00010027113)	EEF2 (ENSGALG00010027732)	DAPK3 (ENSGALG00010027814) #22	NMRK2 (ENSGALG00010027821)	ATCAY (ENSGALG00010027831)	ENSGALG00010027838	NRTN (ENSGALG00010027847)	DUS3L (ENSGALG00010027102)	ENSGALG00010027104	LARP6L (ENSGALG00010028423)	RFX2 (ENSGALG00010027873)	ACSBG2 (ENSGALG00010028562)	MLLT1 (ENSGALG00010028568)	ACER1 (ENSGALG00010028570)	ANP32B (ENSGALG00010028543)	ZNF414 (ENSGALG00010028544)	MYO1F (ENSGALG00010028548)	ADAMTS10 (ENSGALG00010028549)
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00960000191044	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Zebra finch	MODERN SPECIES	1	FBXO22 (ENSTGUG00000003514)	UBE2Q2 (ENSTGUG00000003485)	CHRNB4 (ENSTGUG00000027935)	CHRNA3 (ENSTGUG00000003469)	CHRNA5 (ENSTGUG00000003451)	PSMA4 (ENSTGUG00000023810)	IREB2 (ENSTGUG00000003332)	CRABP1 (ENSTGUG00000003323)	ENSTGUG00000025932	WDR61 (ENSTGUG00000003308)	DNAJA4 (ENSTGUG00000003285)	ENSTGUG00000021533	IDH3A (ENSTGUG00000003253)	CIB2 (ENSTGUG00000003241)	TBC1D2B (ENSTGUG00000003235)	DAPK2 (ENSTGUG00000003221) #22	HERC1 (ENSTGUG00000003191) #23	FBXL22 (ENSTGUG00000026997) #24	USP3 (ENSTGUG00000003160) #25	CA12 (ENSTGUG00000023891) #26
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737.l	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000157737.k	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT01010000223714	ENSGT00390000006883	ENSGT00940000154257
Golden eagle	MODERN SPECIES	21	UBE2Q2 (ENSACCG00020001455)	CHRNB4 (ENSACCG00020001478)	CHRNA3 (ENSACCG00020001492)	CHRNA5 (ENSACCG00020001509)	PSMA4 (ENSACCG00020001523)	HYKK (ENSACCG00020001546)	IREB2 (ENSACCG00020001566)	CRABP1 (ENSACCG00020001587)	SKIC8 (ENSACCG00020001601)	DNAJA4 (ENSACCG00020001628)	ACSBG1 (ENSACCG00020001644)	IDH3A (ENSACCG00020001671)	CIB2 (ENSACCG00020001701)	ENSACCG00020001712	ENSACCG00020001722	DAPK2 (ENSACCG00020001767) #22	HERC1 (ENSACCG00020001827) #23	FBXL22 (ENSACCG00020001892) #24	USP3 (ENSACCG00020001910) #25	CA12 (ENSACCG00020001934) #26	RAB8B (ENSACCG00020001969) #28	RPS27L (ENSACCG00020002006)	LACTB (ENSACCG00020002024) #30	TPM1 (ENSACCG00020002124) #31	TLN2 (ENSACCG00020002284) #33	ENSACCG00020002386	VPS13C (ENSACCG00020003550)	RORA (ENSACCG00020004236)	ICE2 (ENSACCG00020004246)	ANXA2 (ENSACCG00020004261)	FOXB1 (ENSACCG00020004266)
Kakapo	MODERN SPECIES	13	ACER1 (ENSSHBG00005016101)	MLLT1 (ENSSHBG00005016105)	ACSBG2 (ENSSHBG00005016127)	RFX2 (ENSSHBG00005016885)	ENSSHBG00005016968	FBN3 (ENSSHBG00005017003)	EBI3 (ENSSHBG00005017066)	ANKRD24 (ENSSHBG00005017072)	SIRT6 (ENSSHBG00005017080)	CREB3L3 (ENSSHBG00005017085)	MAP2K2 (ENSSHBG00005017092)	ZBTB7A (ENSSHBG00005017095)	ENSSHBG00005017098	PIAS4 (ENSSHBG00005017101)	EEF2 (ENSSHBG00005017109)	ENSSHBG00005017116 #22	ENSSHBG00005017120	ATCAY (ENSSHBG00005017123)	ENSSHBG00005017126	DUS3L (ENSSHBG00005017130)	TIMM44 (ENSSHBG00005017134)	HNRNPM (ENSSHBG00005017146)	LMNB2 (ENSSHBG00005017159)	TIMM13 (ENSSHBG00005017163)	ENSSHBG00005017170	ENSSHBG00005017173	ENSSHBG00005017183	SPPL2B (ENSSHBG00005017241)	LSM7 (ENSSHBG00005017245)	ENSSHBG00005017248	ENSSHBG00005017251
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Elapidae_a	ANCESTRAL SPECIES	135		ENSGT00390000003488.a.b.a	ENSGT00390000000777	ENSGT00940000153321.b.a.t	ENSGT00940000153321.b.a.u	ENSGT01000000215054	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000159261	ENSGT00940000153487.b.a.q.a	ENSGT00940000162053	ENSGT00940000166634	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000153424.a.a.d #22	ENSGT00940000154779.a.a
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	5227															EEF2 (ENSLLTG00000003465)	ENSLLTG00000003510 #22
Blue-lipped sea krait	MODERN SPECIES	5671																ENSLLTG00000009839 #22	ENSLLTG00000009829
Acanthophiinae	ANCESTRAL SPECIES	142						ENSGT01000000215054	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000159261	ENSGT00940000153487.b.a.q.a	ENSGT00940000162053	ENSGT00940000166634	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000153424.a.a.d #22	ENSGT00940000154779.a.a
Eastern brown snake	MODERN SPECIES	171					TNFAIP8L1 (ENSPTXG00000017715)	MYDGF (ENSPTXG00000017716)	ENSPTXG00000017717	ENSPTXG00000017718	ENSPTXG00000017719	ANKRD24 (ENSPTXG00000017721)	CREB3L3 (ENSPTXG00000017722)	MAP2K2 (ENSPTXG00000017723)	ENSPTXG00000017724	ENSPTXG00000011168	PIAS4 (ENSPTXG00000011170)	ENSPTXG00000011171 #22	ENSPTXG00000011174
Laterata	ANCESTRAL SPECIES	33	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257	ENSGT00940000160522
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	95	ENSSMRG00000022667	ENSSMRG00000022666	MYZAP (ENSSMRG00000022665)	POLR2M (ENSSMRG00000022664)	ALDH1A2 (ENSSMRG00000022663)	AQP9 (ENSSMRG00000022662)	LIPC (ENSSMRG00000022661)	ADAM10 (ENSSMRG00000022660)	MINDY2 (ENSSMRG00000022659)	SLTM (ENSSMRG00000022658)	RNF111 (ENSSMRG00000022657)	CCNB2 (ENSSMRG00000022656)	MYO1E (ENSSMRG00000022655)	FAM81A (ENSSMRG00000022654)	TBC1D2B (ENSSMRG00000022653)	DAPK2 (ENSSMRG00000022652) #22	HERC1 (ENSSMRG00000022651) #23	FBXL22 (ENSSMRG00000022650) #24	USP3 (ENSSMRG00000022392) #25	CA12 (ENSSMRG00000022390) #26	RAB8B (ENSSMRG00000022389) #28	LACTB (ENSSMRG00000022388) #30	TPM1 (ENSSMRG00000022387) #31	TLN2 (ENSSMRG00000016377) #33	ENSSMRG00000016374	VPS13C (ENSSMRG00000016373)	RORA (ENSSMRG00000016372)	ICE2 (ENSSMRG00000016371)	ANXA2 (ENSSMRG00000016370)	FOXB1 (ENSSMRG00000016369)	BNIP2 (ENSSMRG00000016368)
Argentine black and white tegu	MODERN SPECIES	94	ENSSMRG00000016347	SBNO2 (ENSSMRG00000016348)	STK11 (ENSSMRG00000016349)	CBARP (ENSSMRG00000016350)	CIRBP (ENSSMRG00000016351)	MIDN (ENSSMRG00000016352)	ATP5F1D (ENSSMRG00000016353)	ENSSMRG00000016354	EFNA2 (ENSSMRG00000016355)	ENSSMRG00000016357	ENSSMRG00000016358	MAP2K2 (ENSSMRG00000016359)	ZBTB7A (ENSSMRG00000016360)	PIAS4 (ENSSMRG00000016361)	EEF2 (ENSSMRG00000016362)	ENSSMRG00000016364 #22	ENSSMRG00000016365
Anura	ANCESTRAL SPECIES	5	ENSGT00390000002443	ENSGT01010000229367	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000018044.a	ENSGT00940000158534.c.a	ENSGT00390000016025.b	ENSGT00940000153246.a.a.b.p	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.b.b.b.b.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.a.a	ENSGT00940000162206.a.b	ENSGT00950000183083.a.d.a	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038
Frog	MODERN SPECIES	3	nmb (ENSXETG00000035668)	kti12 (ENSXETG00000024834)	ENSXETG00000040479	ENSXETG00000009822	ENSXETG00000043516	slc28a2 (ENSXETG00000009806)	ENSXETG00000045233	ireb2 (ENSXETG00000009774)	crabp1 (ENSXETG00000040354)	XB13580952 [provisional] (ENSXETG00000037741)	acsbg1 (ENSXETG00000009756)	cbln2 (ENSXETG00000009754)	cib2 (ENSXETG00000031676)	ENSXETG00000042047	tbc1d2b (ENSXETG00000009751)	dapk2 (ENSXETG00000009747) #22	herc1 (ENSXETG00000009734) #23	fbxl22 (ENSXETG00000038110) #24	usp3 (ENSXETG00000009728) #25	ca12 (ENSXETG00000009722) #26	rab8b (ENSXETG00000009721) #28	rps27l (ENSXETG00000024836)	ENSXETG00000041662	lactb (ENSXETG00000009720) #30	tpm1 (ENSXETG00000009718) #31	tln2 (ENSXETG00000009717) #33	ENSXETG00000040708	ENSXETG00000024842	vps13c (ENSXETG00000005221)	nr2e3 (ENSXETG00000005219)	myo9a (ENSXETG00000005211)
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000005781	ENSLLEG00000005732	ENSLLEG00000005653	ENSLLEG00000005630	ENSLLEG00000005561	IREB2 (ENSLLEG00000005371)	ENSLLEG00000005329	CRABP1 (ENSLLEG00000005312)	ENSLLEG00000005301	ENSLLEG00000005246	ACSBG1 (ENSLLEG00000005214)	IDH3A (ENSLLEG00000004999)	CIB2 (ENSLLEG00000004954)	ENSLLEG00000004940	TBC1D2B (ENSLLEG00000004917)	DAPK2 (ENSLLEG00000004831) #22	ENSLLEG00000004793	HERC1 (ENSLLEG00000004721) #23	FBXL22 (ENSLLEG00000004683) #24	USP3 (ENSLLEG00000004659) #25	ENSLLEG00000004645	CA12 (ENSLLEG00000004636) #26	RAB8B (ENSLLEG00000004600) #28	ENSLLEG00000004590	TPM1 (ENSLLEG00000004533) #31	TLN2 (ENSLLEG00000004408) #33	ENSLLEG00000004350	ENSLLEG00000004347	VPS13C (ENSLLEG00000004309)	NR2E3 (ENSLLEG00000004269)	MYO9A (ENSLLEG00000027193)
Coelacanth	MODERN SPECIES	238															TBC1D2B (ENSLACG00000000999)	DAPK2 (ENSLACG00000003913) #22	HERC1 (ENSLACG00000007000) #23	FBXL22 (ENSLACG00000010074) #24	USP3 (ENSLACG00000010249) #25	CA12 (ENSLACG00000011724) #26	ENSLACG00000011832	APH1B (ENSLACG00000012093) #27	RAB8B (ENSLACG00000012265) #28	rps27.1 (ENSLACG00000012660)	TPM1 (ENSLACG00000012977) #31	TLN2 (ENSLACG00000013827) #33	c2cd4a (ENSLACG00000015197)	VPS13C (ENSLACG00000015884)	RORA (ENSLACG00000017448)	ICE2 (ENSLACG00000017527)	ANXA2 (ENSLACG00000017614)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Clupeocephala	ANCESTRAL SPECIES	308												ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000161753	ENSGT00400000024256	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b
Euteleosteomorpha	ANCESTRAL SPECIES	97			ENSGT01030000234542.b.b.a.a.a.b.wb.a.a ##31	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT01030000236342	ENSGT00400000024256	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b	ENSGT00980000198875	ENSGT00500000045505.a
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT01030000234542.b.b.a.a.a.b.wb.b ##31	ENSGT00940000157178.g	ENSGT00940000157924	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000161753	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00980000198875	ENSGT00500000045505.a	ENSGT00940000156907.p.a.a
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00950000182915.b.b.a.b.c.a	ENSGT01030000234542.b.b.a.a.a.b.wb.a.a ##31	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000161753	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00980000198875	ENSGT00500000045505.a	ENSGT00940000156907.p.a.a
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Barramundi perch	MODERN SPECIES	74	klf2b (ENSLCAG00010017056)	ENSLCAG00010017034	ENSLCAG00010017004	DNAH8 (ENSLCAG00010016949)	rx2 (ENSLCAG00010016937)	ENSLCAG00010016936	ENSLCAG00010016452	ATCAY (ENSLCAG00010016334)	nmrk2 (ENSLCAG00010016330)	loxl5b (ENSLCAG00010016325)	ENSLCAG00010016322	mfsd14a2 (ENSLCAG00010016277)	insra (ENSLCAG00010016069)	arhgef18a (ENSLCAG00010016005)	sppl2 (ENSLCAG00010015853)	ENSLCAG00010015805 #22	ENSLCAG00010015798	prkci (ENSLCAG00010015724)	ENSLCAG00010015709	gpr160 (ENSLCAG00010015708)	nadkb (ENSLCAG00010015705)	sec62 (ENSLCAG00010015701)	samd7 (ENSLCAG00010015697)	apoda.2 (ENSLCAG00010015694)	apoda.2 (ENSLCAG00010015692)	apoda.1 (ENSLCAG00010015690)	COPS9 (ENSLCAG00010015689)	and2 (ENSLCAG00010015687)	ENSLCAG00010015683	ENSLCAG00010015652	ENSLCAG00010015641
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Tongue sole	MODERN SPECIES	12	TPM4 (ENSCSEG00000015696) ##31	ap1m1 (ENSCSEG00000015635)	klf2b (ENSCSEG00000015625)	ENSCSEG00000015603	ENSCSEG00000015580	rx2 (ENSCSEG00000015566)	ENSCSEG00000015562	ATCAY (ENSCSEG00000015532)	nmrk2 (ENSCSEG00000015523)	loxl5b (ENSCSEG00000015516)	ENSCSEG00000014556	mfsd14a2 (ENSCSEG00000014520)	insra (ENSCSEG00000014505)	arhgef18a (ENSCSEG00000014485)	sppl2 (ENSCSEG00000014469)	ENSCSEG00000014457 #22	ENSCSEG00000014443	prkci (ENSCSEG00000014385)	ENSCSEG00000014368	nadkb (ENSCSEG00000014348)	sec62 (ENSCSEG00000014338)	samd7 (ENSCSEG00000014323)	apoda.2 (ENSCSEG00000014291)	apoda.1 (ENSCSEG00000014274)	and2 (ENSCSEG00000014260)	ENSCSEG00000014237	ENSCSEG00000014212	e2f5 (ENSCSEG00000014202)	ENSCSEG00000014122	ENSCSEG00000014103	ENSCSEG00000014085
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00940000157924	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000155464.b	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000156907.p.a.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000157353
Zig-zag eel	MODERN SPECIES	8	klf2b (ENSMAMG00000004549)	ENSMAMG00000004501	ENSMAMG00000004470	rx2 (ENSMAMG00000004421)	cplx4c (ENSMAMG00000004404)	ENSMAMG00000027625	ENSMAMG00000024656	ENSMAMG00000002438	nmrk2 (ENSMAMG00000027862)	loxl5b (ENSMAMG00000027833)	ENSMAMG00000025484	mfsd14a2 (ENSMAMG00000002348)	insra (ENSMAMG00000002263)	arhgef18a (ENSMAMG00000002226)	sppl2 (ENSMAMG00000002200)	ENSMAMG00000002171 #22	ENSMAMG00000024860	ENSMAMG00000002129	prkci (ENSMAMG00000002047)	ENSMAMG00000001977	nadkb (ENSMAMG00000001911)	sec62 (ENSMAMG00000001870)	samd7 (ENSMAMG00000001830)	apoda.1 (ENSMAMG00000026576)	ENSMAMG00000026220	and2 (ENSMAMG00000001749)	ENSMAMG00000026043	ENSMAMG00000001723	ENSMAMG00000001621	e2f5 (ENSMAMG00000024854)	ENSMAMG00000001574
Anabantoidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Siamese fighting fish	MODERN SPECIES	8	ENSBSLG00000026013	ENSBSLG00000026085	rx2 (ENSBSLG00000026109)	cplx4c (ENSBSLG00000026113)	ATCAY (ENSBSLG00000026123)	nmrk2 (ENSBSLG00000026127)	loxl5b (ENSBSLG00000026129)	ENSBSLG00000026138	mfsd14a2 (ENSBSLG00000026162)	insra (ENSBSLG00000026284)	arhgef18a (ENSBSLG00000026444)	ENSBSLG00000026445	ENSBSLG00000026446	ENSBSLG00000026448	sppl2 (ENSBSLG00000026467)	ENSBSLG00000026491 #22	ENSBSLG00000026497	prkci (ENSBSLG00000026515)	ENSBSLG00000026532	gpr160 (ENSBSLG00000026533)	nadkb (ENSBSLG00000026536)	sec62 (ENSBSLG00000026544)	samd7 (ENSBSLG00000026545)	apoda.2 (ENSBSLG00000026546)	apoda.1 (ENSBSLG00000026547)	COPS9 (ENSBSLG00000026549)	and2 (ENSBSLG00000026550)	ENSBSLG00000026552	ENSBSLG00000026553	e2f5 (ENSBSLG00000026554)	ENSBSLG00000026555
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000164486.e.b	ENSGT00940000175179	ENSGT00740000117176	ENSGT01060000248544.a.a.b.a.a.e	ENSGT00940000158445.e	ENSGT00940000155764.A.b.b	ENSGT00940000177888	ENSGT00910000145048	ENSGT00940000175426	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759	ENSGT00940000166147	ENSGT00530000063936.a.a	ENSGT00940000174495	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c	ENSGT00940000166522	ENSGT00390000004692.d.a.m.b	ENSGT00940000154063.C.a.a.a.b.a.b	ENSGT00940000154063.C.a.a.a.a	ENSGT00940000154063.C.a.a.a.b.a.a	ENSGT00940000176019	ENSGT00940000166336	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000165036.b	ENSGT00940000156783.k	ENSGT00940000164791.a.b	ENSGT01100000263541.a.a.a.a	ENSGT01100000263541.a.a.a.b.a.b.a	ENSGT01100000263541.a.a.a.b.a.b.b
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000164486.e.b	ENSGT00940000175179	ENSGT00740000117176	ENSGT01060000248544.a.a.b.a.a.e	ENSGT00940000158445.e	ENSGT00940000155764.A.b.b	ENSGT00940000177888	ENSGT00910000145048	ENSGT00940000175426	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759	ENSGT00940000166147	ENSGT00530000063936.a.a	ENSGT00940000174495	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c	ENSGT00940000166522	ENSGT00390000004692.d.a.m.b	ENSGT00940000154063.C.a.a.a.b.a.b	ENSGT00940000154063.C.a.a.a.a	ENSGT00940000154063.C.a.a.a.b.a.a	ENSGT00940000176019	ENSGT00940000166336	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000165036.b	ENSGT00940000156783.k	ENSGT00940000164791.a.b	ENSGT01100000263541.a.a.a.a	ENSGT01100000263541.a.a.a.b.a.b.a	ENSGT01100000263541.a.a.a.b.a.b.b
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000164486.e.b	ENSGT00940000175179	ENSGT00740000117176	ENSGT01060000248544.a.a.b.a.a.e	ENSGT00940000158445.e	ENSGT00940000155764.A.b.b	ENSGT00940000177888	ENSGT00910000145048	ENSGT00940000175426	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759	ENSGT00940000166147	ENSGT00530000063936.a.a	ENSGT00940000174495	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c	ENSGT00940000166522	ENSGT00390000004692.d.a.m.b	ENSGT00940000154063.C.a.a.a.b.a.b	ENSGT00940000154063.C.a.a.a.a	ENSGT00940000154063.C.a.a.a.b.a.a	ENSGT00940000176019	ENSGT00940000166336	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000165036.b	ENSGT00940000156783.k	ENSGT00940000164791.a.b	ENSGT01100000263541.a.a.a.a	ENSGT01100000263541.a.a.a.b.a.b.a	ENSGT01100000263541.a.a.a.b.a.b.b
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000161246.c	ENSGT00940000167471	ENSGT00940000177787	ENSGT00940000164486.e.b	ENSGT01060000248544.a.a.b.a.a.e	ENSGT00940000158445.e	ENSGT00940000155764.A.b.b	ENSGT01030000235383	ENSGT00940000175426	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759	ENSGT00940000166147	ENSGT00530000063936.a.a	ENSGT00940000174495	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c	ENSGT00940000166522	ENSGT00390000004692.d.a.m.b	ENSGT00940000154063.C.a.a.a.b.a.b	ENSGT00940000154063.C.a.a.a.b.a.a	ENSGT00940000176019	ENSGT00940000166336	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000165036.b	ENSGT00940000156783.k	ENSGT00940000164791.a.b	ENSGT01100000263541.a.a.a.a	ENSGT01100000263541.a.a.a.b.a.b.a	ENSGT01100000263541.a.a.a.b.a.b.b	ENSGT00940000165021.b
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Pike perch	MODERN SPECIES	12	TPM4 (ENSSLUG00000021784) ##31	ap1m1 (ENSSLUG00000021921)	klf2b (ENSSLUG00000021931)	ENSSLUG00000022021	rx2 (ENSSLUG00000022991)	ENSSLUG00000023026	ATCAY (ENSSLUG00000023110)	ENSSLUG00000023122	nmrk2 (ENSSLUG00000023127)	loxl5b (ENSSLUG00000023134)	ENSSLUG00000023194	mfsd14a2 (ENSSLUG00000023580)	insra (ENSSLUG00000023795)	arhgef18a (ENSSLUG00000024303)	sppl2 (ENSSLUG00000024353)	ENSSLUG00000024543 #22	ENSSLUG00000024565	prkci (ENSSLUG00000024678)	ENSSLUG00000024851	nadkb (ENSSLUG00000024865)	sec62 (ENSSLUG00000024894)	samd7 (ENSSLUG00000024898)	apoda.2 (ENSSLUG00000024903)	apoda.2 (ENSSLUG00000024906)	apoda.1 (ENSSLUG00000024912)	COPS9 (ENSSLUG00000024915)	and2 (ENSSLUG00000024919)	ENSSLUG00000024923	ENSSLUG00000000235	e2f5 (ENSSLUG00000000269)	ENSSLUG00000000275
Cottioidei	ANCESTRAL SPECIES	158																ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c
Lumpfish	MODERN SPECIES	8	ap1m1 (ENSCLMG00005020480)	ENSCLMG00005020479	ENSCLMG00005019530	ENSCLMG00005019524	ENSCLMG00005019523	rx2 (ENSCLMG00005019518)	ENSCLMG00005019496	ATCAY (ENSCLMG00005019493)	nmrk2 (ENSCLMG00005019484)	loxl5b (ENSCLMG00005019478)	ENSCLMG00005019375	mfsd14a2 (ENSCLMG00005018750)	insra (ENSCLMG00005010724)	sppl2 (ENSCLMG00005009564)	arhgef18a (ENSCLMG00005009552)	ENSCLMG00005009500 #22	ENSCLMG00005009498	prkci (ENSCLMG00005006034)	ENSCLMG00005006000	ENSCLMG00005005998	nadkb (ENSCLMG00005004665)	sec62 (ENSCLMG00005004512)	samd7 (ENSCLMG00005004484)	ENSCLMG00005004465	apoda.2 (ENSCLMG00005004450)	apoda.1 (ENSCLMG00005004440)	ENSCLMG00005004432	and2 (ENSCLMG00005004411)	ENSCLMG00005004390	ENSCLMG00005004364	ENSCLMG00005020376
Eupecaria_C	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Eupercaria_incertae_sedis	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Large yellow croaker	MODERN SPECIES	1	slc25a24l (ENSLCRG00005022391)	fubp1 (ENSLCRG00005022394)	miga1 (ENSLCRG00005022414)	usp33 (ENSLCRG00005022587)	zzz3 (ENSLCRG00005022748)	ak5 (ENSLCRG00005022750)	pigk (ENSLCRG00005022751)	ST6GALNAC5 (ENSLCRG00005022777)	st6galnac3 (ENSLCRG00005022779)	rabggtb (ENSLCRG00005022782)	acadm (ENSLCRG00005022785)	mfsd14a2 (ENSLCRG00005022816)	insra (ENSLCRG00005022862)	arhgef18a (ENSLCRG00005023556)	sppl2 (ENSLCRG00005023570)	ENSLCRG00005023631 #22	ENSLCRG00005023633	prkci (ENSLCRG00005023644)	ENSLCRG00005023677	ENSLCRG00005023678	nadkb (ENSLCRG00005023680)	sec62 (ENSLCRG00005023681)	samd7 (ENSLCRG00005023682)	apoda.2 (ENSLCRG00005023683)	apoda.2 (ENSLCRG00005023684)	apoda.1 (ENSLCRG00005023685)	COPS9 (ENSLCRG00005023687)	and2 (ENSLCRG00005023688)	ENSLCRG00005023690	LRRCC1 (ENSLCRG00005023692)	e2f5 (ENSLCRG00005023696)
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000157924	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155464.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00690000103893	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000161753	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b	ENSGT00950000183138.a.a.b.v.b
Poecilia	ANCESTRAL SPECIES	16	ENSGT00940000157924	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155464.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00690000103893	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b	ENSGT00950000183138.a.a.b.v.b	ENSGT00440000033408.a.b
NAME_6	ANCESTRAL SPECIES	11	ENSGT00940000157924	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155464.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00690000103893	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b	ENSGT00950000183138.a.a.b.v.b	ENSGT00440000033408.a.b
Sailfin molly	MODERN SPECIES	1159												mfsd14a2 (ENSPLAG00000015853)	insra (ENSPLAG00000000359)	arhgef18a (ENSPLAG00000015793)	sppl2 (ENSPLAG00000015779)	ENSPLAG00000015727 #22
Amazon molly	MODERN SPECIES	401	klf2b (ENSPFOG00000001804)	ENSPFOG00000001932	ENSPFOG00000002251	ENSPFOG00000002333	cplx4c (ENSPFOG00000002659)	rx2 (ENSPFOG00000002677)	ATCAY (ENSPFOG00000023322)	nmrk2 (ENSPFOG00000022405)	loxl5b (ENSPFOG00000002741)	ENSPFOG00000020950	ENSPFOG00000002967	mfsd14a2 (ENSPFOG00000003232)	insra (ENSPFOG00000003462)	arhgef18a (ENSPFOG00000004448)	sppl2 (ENSPFOG00000004652)	ENSPFOG00000004990 #22	prkci (ENSPFOG00000005126)	ENSPFOG00000005377	nadkb (ENSPFOG00000005440)	sec62 (ENSPFOG00000005670)	samd7 (ENSPFOG00000005810)	apoda.2 (ENSPFOG00000005900)	apoda.2 (ENSPFOG00000005938)	apoda.1 (ENSPFOG00000006029)	apoda.2 (ENSPFOG00000006091)	and2 (ENSPFOG00000006096)	ENSPFOG00000006120	ENSPFOG00000006195	ENSPFOG00000006414	ACKR4 (ENSPFOG00000020951)	ENSPFOG00000022715
Guppy	MODERN SPECIES	447	ap1m1 (ENSPREG00000012177)	klf2b (ENSPREG00000012250)	ENSPREG00000012272	ENSPREG00000012309	ENSPREG00000012428	cplx4c (ENSPREG00000013180)	rx2 (ENSPREG00000013196)	ATCAY (ENSPREG00000013212)	nmrk2 (ENSPREG00000013253)	ENSPREG00000013268	ENSPREG00000013319	mfsd14a2 (ENSPREG00000013489)	insra (ENSPREG00000013525)	arhgef18a (ENSPREG00000013555)	sppl2 (ENSPREG00000013571)	ENSPREG00000013588 #22	prkci (ENSPREG00000013611)	SKIL (ENSPREG00000013657)	nadkb (ENSPREG00000013672)	sec62 (ENSPREG00000013701)	samd7 (ENSPREG00000013733)	apoda.2 (ENSPREG00000013773)	apoda.2 (ENSPREG00000013769)	apoda.1 (ENSPREG00000013787)	and2 (ENSPREG00000013791)	ENSPREG00000013805	ENSPREG00000013818	ENSPREG00000013828	ENSPREG00000013837	ACKR4 (ENSPREG00000013864)	ENSPREG00000013875
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000160466	ENSGT00940000157246.a	ENSGT01030000234542.b.b.a.a.a.b.wb.a.a ##31	ENSGT00940000157924	ENSGT00940000164495.c.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b	ENSGT00950000183138.a.a.b.v.b	ENSGT00440000033408.a.b
Japanese Medaka HdrR	MODERN SPECIES	8	TPM4 (ENSORLG00000018019) ##31	ap1m1 (ENSORLG00000018017)	klf2b (ENSORLG00000018015)	ENSORLG00000018011	rx2 (ENSORLG00000018007)	cplx4c (ENSORLG00000018003)	ENSORLG00000018000	nmrk2 (ENSORLG00000017998)	ENSORLG00000018014	loxl5b (ENSORLG00000017995)	ENSORLG00000026342	mfsd14a2 (ENSORLG00000017988)	insra (ENSORLG00000017980)	arhgef18a (ENSORLG00000017973)	sppl2 (ENSORLG00000017969)	ENSORLG00000017965 #22	prkci (ENSORLG00000017963)	ENSORLG00000023373	nadkb (ENSORLG00000017958)	sec62 (ENSORLG00000017951)	ENSORLG00000022218	samd7 (ENSORLG00000017949)	ENSORLG00000017946	apoda.2 (ENSORLG00000021914)	apoda.1 (ENSORLG00000017938)	and2 (ENSORLG00000017936)	ENSORLG00000017934	ENSORLG00000017927	e2f5 (ENSORLG00000017919)	ENSORLG00000017918	ENSORLG00000017914
Chinese medaka	MODERN SPECIES	1146	ENSOSIG00000019229	ENSOSIG00000019231	pnhd (ENSOSIG00000019233)	CIB3 (ENSOSIG00000019237)	ENSOSIG00000019246	TPM4 (ENSOSIG00000019286) ##31	klf2b (ENSOSIG00000019756)	ENSOSIG00000019757	rx2 (ENSOSIG00000019759)	cplx4c (ENSOSIG00000019760)	nmrk2 (ENSOSIG00000019762)	loxl5b (ENSOSIG00000019765)	mfsd14a2 (ENSOSIG00000019792)	insra (ENSOSIG00000019905)	sppl2 (ENSOSIG00000021169)	ENSOSIG00000021173 #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Cichlidae	ANCESTRAL SPECIES	2	ENSGT01030000234542.b.b.a.a.a.b.wb.b ##31	ENSGT00940000157924	ENSGT00940000169355	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000156252.qb	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT01030000234542.b.b.a.a.a.b.wb.b ##31	ENSGT00940000157924	ENSGT00940000169355	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000156252.qb	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT01030000234542.b.b.a.a.a.b.wb.b ##31	ENSGT00940000157924	ENSGT00940000169355	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c	ENSGT00940000161753	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000156252.qb
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000157924	ENSGT00940000169355	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000156845.v	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.c	ENSGT00940000161753	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000156252.qb
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000157924	ENSGT00940000169355	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000156845.v	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000156252.qb	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b
Haplochromini_B	ANCESTRAL SPECIES	35	ENSGT00940000157924	ENSGT00940000169355	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000158992	ENSGT00940000163917.a.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a.c.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000156845.v	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000162952.d.b.b	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a.b	ENSGT00510000046981.a.a.a	ENSGT00510000046981.b.b	ENSGT00500000045505.a	ENSGT00940000164239.b.a	ENSGT00940000157414	ENSGT00940000157353	ENSGT01030000234667.a.a.a.b.b	ENSGT00950000183138.a.a.b.v.b
Zebra mbuna	MODERN SPECIES	1100	ENSMZEG00005024524	CCN1 (ENSMZEG00005024522)	ENSMZEG00005024521	ift22 (ENSMZEG00005024520)	atp5l (ENSMZEG00005024517)	ENSMZEG00005024507	atp6v0b (ENSMZEG00005024504)	ATCAY (ENSMZEG00005024500)	nmrk2 (ENSMZEG00005024497)	loxl5b (ENSMZEG00005024495)	ENSMZEG00005024482	mfsd14a2 (ENSMZEG00005024480)	insra (ENSMZEG00005024476)	arhgef18a (ENSMZEG00005024471)	sppl2 (ENSMZEG00005024468)	ENSMZEG00005024465 #22	ENSMZEG00005024464	prkci (ENSMZEG00005024461)	ENSMZEG00005024459	nadkb (ENSMZEG00005024457)	sec62 (ENSMZEG00005024455)	samd7 (ENSMZEG00005024454)	apoda.2 (ENSMZEG00005024452)	apoda.2 (ENSMZEG00005024451)	apoda.1 (ENSMZEG00005024450)	and2 (ENSMZEG00005024448)	ENSMZEG00005024447	ENSMZEG00005024444	e2f5 (ENSMZEG00005024443)	ACKR4 (ENSMZEG00005024442)	ENSMZEG00005024440
Eastern happy	MODERN SPECIES	9	ap1m1 (ENSACLG00000010617)	ENSACLG00000010674	ENSACLG00000010693	ENSACLG00000010700	DNAH8 (ENSACLG00000010713)	rx2 (ENSACLG00000010943)	cplx4c (ENSACLG00000010955)	ATCAY (ENSACLG00000010970)	nmrk2 (ENSACLG00000011005)	loxl5b (ENSACLG00000011015)	ENSACLG00000011076	mfsd14a2 (ENSACLG00000011223)	insra (ENSACLG00000011245)	arhgef18a (ENSACLG00000011286)	sppl2 (ENSACLG00000011297)	ENSACLG00000011302 #22	ENSACLG00000011310	prkci (ENSACLG00000011313)	nadkb (ENSACLG00000011335)	sec62 (ENSACLG00000011336)	samd7 (ENSACLG00000011343)	apoda.2 (ENSACLG00000011349)	apoda.2 (ENSACLG00000011353)	apoda.1 (ENSACLG00000011357)	and2 (ENSACLG00000011361)	ENSACLG00000011720	ENSACLG00000011753	e2f5 (ENSACLG00000011786)	ACKR4 (ENSACLG00000011822)	ENSACLG00000011827	ENSACLG00000011890
P. nyererei	MODERN SPECIES	326	ap1m1 (ENSPNYG00000007319)	ENSPNYG00000007351	ENSPNYG00000007382	ENSPNYG00000007476	DNAH8 (ENSPNYG00000007506)	rx2 (ENSPNYG00000007700)	cplx4c (ENSPNYG00000007709)	ATCAY (ENSPNYG00000007738)	nmrk2 (ENSPNYG00000007759)	loxl5b (ENSPNYG00000007772)	ENSPNYG00000007844	mfsd14a2 (ENSPNYG00000007987)	insra (ENSPNYG00000008035)	arhgef18a (ENSPNYG00000008118)	sppl2 (ENSPNYG00000008155)	ENSPNYG00000008207 #22	ENSPNYG00000008227	prkci (ENSPNYG00000008250)	ENSPNYG00000008313	nadkb (ENSPNYG00000008338)	sec62 (ENSPNYG00000008388)	samd7 (ENSPNYG00000008412)	apoda.2 (ENSPNYG00000008484)	apoda.2 (ENSPNYG00000008656)	apoda.1 (ENSPNYG00000008684)	and2 (ENSPNYG00000008728)	ENSPNYG00000008746	ENSPNYG00000008772	ENSPNYG00000008809	ENSPNYG00000008896	ENSPNYG00000008915
Lyretail cichlid	MODERN SPECIES	313	rab8a (ENSNBRG00000012588)	ENSNBRG00000012547 ##31	ap1m1 (ENSNBRG00000012502)	ENSNBRG00000012440	ENSNBRG00000012411	DNAH8 (ENSNBRG00000012073)	rx2 (ENSNBRG00000011995)	cplx4c (ENSNBRG00000011980)	ATCAY (ENSNBRG00000011928)	nmrk2 (ENSNBRG00000011899)	loxl5b (ENSNBRG00000011870)	mfsd14a2 (ENSNBRG00000011804)	insra (ENSNBRG00000011734)	arhgef18a (ENSNBRG00000011680)	sppl2 (ENSNBRG00000011637)	ENSNBRG00000011614 #22	ENSNBRG00000011596	prkci (ENSNBRG00000011552)	ENSNBRG00000011529	nadkb (ENSNBRG00000011487)	sec62 (ENSNBRG00000011453)	samd7 (ENSNBRG00000011438)	apoda.2 (ENSNBRG00000011421)	apoda.2 (ENSNBRG00000011310)	apoda.1 (ENSNBRG00000011246)	and2 (ENSNBRG00000011222)	ENSNBRG00000011206	ENSNBRG00000011117	e2f5 (ENSNBRG00000011093)	ACKR4 (ENSNBRG00000011083)	ENSNBRG00000011069
Nile tilapia	MODERN SPECIES	9	ap1m1 (ENSONIG00000018580)	ENSONIG00000018581	ENSONIG00000018582	ENSONIG00000018588	DNAH8 (ENSONIG00000018590)	rx2 (ENSONIG00000018592)	cplx4c (ENSONIG00000037812)	ATCAY (ENSONIG00000018595)	nmrk2 (ENSONIG00000018596)	loxl5b (ENSONIG00000018598)	ENSONIG00000018600	mfsd14a (ENSONIG00000037562)	insra (ENSONIG00000018609)	arhgef18a (ENSONIG00000018613)	sppl2 (ENSONIG00000018616)	dapk3 (ENSONIG00000018617) #22	ENSONIG00000018619	prkci (ENSONIG00000018621)	ENSONIG00000035617	nadkb (ENSONIG00000018628)	sec62 (ENSONIG00000018630)	samd7 (ENSONIG00000018632)	apoda.2 (ENSONIG00000018633)	apoda.2 (ENSONIG00000028478)	apoda.1 (ENSONIG00000018635)	and2 (ENSONIG00000018636)	ENSONIG00000018638	ENSONIG00000018639	ACKR4 (ENSONIG00000021247)	ENSONIG00000035783	ENSONIG00000034261
Tiger tail seahorse	MODERN SPECIES	488	ENSHCOG00000002432	ENSHCOG00000002440	ENSHCOG00000002450	ENSHCOG00000002466	ENSHCOG00000002479	ENSHCOG00000002483	rx2 (ENSHCOG00000002503)	ATCAY (ENSHCOG00000002527)	nmrk2 (ENSHCOG00000002532)	loxl5b (ENSHCOG00000002565)	ENSHCOG00000002576	mfsd14a2 (ENSHCOG00000002592)	insra (ENSHCOG00000002618)	arhgef18a (ENSHCOG00000002623)	sppl2 (ENSHCOG00000002642)	ENSHCOG00000000788 #22	prkci (ENSHCOG00000002704)	SKIL (ENSHCOG00000002748)	nadkb (ENSHCOG00000002770)	sec62 (ENSHCOG00000002781)	samd7 (ENSHCOG00000002798)	apoda.1 (ENSHCOG00000002829)	and2 (ENSHCOG00000002846)	RALYL (ENSHCOG00000002851)	ENSHCOG00000002857	LRRCC1 (ENSHCOG00000002914)	e2f5 (ENSHCOG00000002929)
Protacanthopterygii	ANCESTRAL SPECIES	32	ENSGT00940000164495.c.a	ENSGT00940000155438.a	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000163917.a.b.c	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a	ENSGT00940000165007.a	ENSGT00940000154779.a.a.c	ENSGT00940000156845.nc.a	ENSGT00940000156845.nc.b	ENSGT00940000164530	ENSGT00940000155404.i.a.d.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b.g	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00940000161304.a.b.a.b	ENSGT00940000161304.a.b.b	ENSGT00940000156073.c.a.b	ENSGT00940000154327.a	ENSGT00390000001523	ENSGT01020000230412.A.c.b.c.b	ENSGT00950000182991.A.b.b.a ##32	ENSGT00990000203615.b.a.a.a.a.g.b.b
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Oncorhynchus	ANCESTRAL SPECIES	11			ENSGT00940000158588.d.b.a	ENSGT00950000183067.a.b.b.vb.b	ENSGT00390000005847.e	ENSGT00940000160466.d	ENSGT00940000164495.c.a.e	ENSGT00940000154779.a.a.c.g	ENSGT00940000156845.nc.b	ENSGT00940000164530.d.b	ENSGT00940000155404.i.a.d.a	ENSGT00940000157375.d.d	ENSGT00940000158753.g.a	ENSGT00510000047872.s	ENSGT00940000161753.f.b	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b.g.a	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E.c	ENSGT00940000158435.o	ENSGT00940000161304.a.b.b.a	ENSGT00940000156073.c.a.b.d	ENSGT00940000154446.b.a.a.b.b	ENSGT00990000203615.b.a.a.a.a.g.b.b	ENSGT00940000155795.e.b	ENSGT00940000159779.e.a	ENSGT00390000000566.cb	ENSGT00940000159936.c	ENSGT01030000234556.a.b.b.a	ENSGT00940000157783.j
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00410000025695.a.c	ENSGT00940000158050.h.a.b	ENSGT00940000158588.d.b.a	ENSGT00950000183067.a.b.b.vb.b	ENSGT00390000005847.e	ENSGT00940000160466.d	ENSGT00940000164495.c.a.e	ENSGT00940000154779.a.a.c.g	ENSGT00940000156845.nc.b	ENSGT00940000164530.d.b	ENSGT00940000155404.i.a.d.a	ENSGT00940000157375.d.d	ENSGT00940000158753.h	ENSGT00510000047872.s	ENSGT00940000161753.f.b	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b.g.a	ENSGT00940000162952.d.b.b	ENSGT00940000162952.c	ENSGT00940000153497.E.c	ENSGT00940000158435.o	ENSGT00940000161304.a.b.b.a	ENSGT00940000156073.c.a.b.d	ENSGT00940000154446.b.a.a.b.b	ENSGT00990000203615.b.a.a.a.a.g.b.b	ENSGT00940000155795.e.b	ENSGT00940000159779.e.a	ENSGT00390000000566.cb	ENSGT00940000159936.c	ENSGT01030000234556.a.b.b.a	ENSGT00940000157783.j
Chinook salmon	MODERN SPECIES	20	ENSOTSG00005016051	ENSOTSG00005016048	ENSOTSG00005016037	rnf126 (ENSOTSG00005016028)	ENSOTSG00005016017	stk11 (ENSOTSG00005016016)	klf2b (ENSOTSG00005016015)	loxl5b (ENSOTSG00005016013)	ENSOTSG00005013380	ENSOTSG00005013371	ENSOTSG00005013370	insra (ENSOTSG00005012927)	arhgef18a (ENSOTSG00005012924)	ENSOTSG00005012923	lsm7 (ENSOTSG00005012920)	ENSOTSG00005012919 #22	ENSOTSG00005012918	ENSOTSG00005012916	prkci (ENSOTSG00005009959)	ENSOTSG00005009953	SHISAL2A (ENSOTSG00005009952)	slc1a7a (ENSOTSG00005009951)	ENSOTSG00005009950	KCNJ10 (ENSOTSG00005009949)	kirrel1b (ENSOTSG00005009843)	cadm3 (ENSOTSG00005009837)	sdhc (ENSOTSG00005009834)	ENSOTSG00005009832	atp1a2a (ENSOTSG00005007964)	mpz (ENSOTSG00005007949)	lig1 (ENSOTSG00005007948)
Huchen	MODERN SPECIES	10391																ENSHHUG00000010910 #22
Northern pike	MODERN SPECIES	2	LPL (ENSELUG00000014351)	ap1m1 (ENSELUG00000014308)	klf2b (ENSELUG00000014262)	ENSELUG00000014207	ENSELUG00000014098	rx2 (ENSELUG00000014048)	cplx4c (ENSELUG00000014015)	ATCAY (ENSELUG00000013996)	nmrk2 (ENSELUG00000013939)	loxl5b (ENSELUG00000013872)	ENSELUG00000013827	mfsd14a2 (ENSELUG00000013771)	insra (ENSELUG00000013713)	arhgef18a (ENSELUG00000013597)	sppl2 (ENSELUG00000013526)	lsm7 (ENSELUG00000000497) #22	ENSELUG00000013373	ENSELUG00000028866	ENSELUG00000013275	prkci (ENSELUG00000013218)	ENSELUG00000013131	gpr160 (ENSELUG00000013084)	nadkb (ENSELUG00000013005)	SHISAL2A (ENSELUG00000012967)	slc1a7a (ENSELUG00000012954)	scp2a (ENSELUG00000012894)	czib (ENSELUG00000029080)	uck2 (ENSELUG00000012833)	ENSELUG00000012855	ENSELUG00000012783	ENSELUG00000012756 ##32
Otomorpha	ANCESTRAL SPECIES	75												ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00940000161753	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b.a	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b	ENSGT00940000155451	ENSGT00390000010993	ENSGT00390000018319.a.b.b.b.a.b	ENSGT00940000154954.ob
Otophysi	ANCESTRAL SPECIES	3	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00950000183116.b.a.a.a.a	ENSGT00940000154368.s	ENSGT00940000166346	ENSGT01050000244890.a.a.b	ENSGT00940000158452	ENSGT00390000006103	ENSGT00390000000337	ENSGT00950000182966.C.b.a	ENSGT00940000160923	ENSGT00950000182933.C.i	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b.a	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b	ENSGT00940000155451	ENSGT00390000010993	ENSGT00940000154954.ob	ENSGT00940000155528.s.b	ENSGT00940000164644
Characiphysae	ANCESTRAL SPECIES	139	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00950000183116.b.a.a.a.a	ENSGT00940000154368.s	ENSGT00940000166346	ENSGT01050000244890.a.a.b	ENSGT00940000158452	ENSGT00390000006103	ENSGT00390000000337	ENSGT00950000182966.C.b.a	ENSGT00940000160923	ENSGT00950000182933.C.i	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b.a	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b	ENSGT00940000155451	ENSGT00390000010993	ENSGT00940000155528.s.b	ENSGT00940000164644	ENSGT00940000167061.i
Channel catfish	MODERN SPECIES	26	ENSIPUG00000015968	MYOM1 (ENSIPUG00000015512)	zgc:66427 (ENSIPUG00000015463)	ENSIPUG00000015449	parp2 (ENSIPUG00000015405)	mettl17 (ENSIPUG00000015340)	sdr39u1 (ENSIPUG00000015289)	ltb4r2b (ENSIPUG00000015281)	ENSIPUG00000015251	MYADM (ENSIPUG00000015239)	ENSIPUG00000015140	insra (ENSIPUG00000015045)	ENSIPUG00000015030	arhgef18a (ENSIPUG00000014965)	sppl2 (ENSIPUG00000014945)	DAPK3 (ENSIPUG00000014879) #22	ENSIPUG00000014869	ing5b (ENSIPUG00000014801)	pak2a (ENSIPUG00000014747)	KLHL6 (ENSIPUG00000014694)	ENSIPUG00000014741	pdcd10b (ENSIPUG00000014616)	SLITRK3 (ENSIPUG00000014591)	NRDC (ENSIPUG00000014405)	ifi44c2 (ENSIPUG00000014380)	apoda.1 (ENSIPUG00000014347)	copa (ENSIPUG00000014257)	pex19 (ENSIPUG00000014239)	MAP1S (ENSIPUG00000014208)	CARTPT (ENSIPUG00000014187)	ENSIPUG00000014145
Characiphysae_b	ANCESTRAL SPECIES	133	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00950000183116.b.a.a.a.a	ENSGT00940000154368.s	ENSGT00940000166346	ENSGT01050000244890.a.a.b	ENSGT00940000158452	ENSGT00390000006103	ENSGT00390000000337	ENSGT00950000182966.C.b.a	ENSGT00940000160923	ENSGT00950000182933.C.i	ENSGT00940000164530	ENSGT00940000155404.i.a	ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b.a	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b	ENSGT00940000155451	ENSGT00390000010993	ENSGT00940000155528.s.b	ENSGT00940000164644	ENSGT00940000167061.i
Electric eel	MODERN SPECIES	375	apol1 (ENSEEEG00000012980)	ENSEEEG00000012981	hbl4 (ENSEEEG00000012991)	zgc:66427 (ENSEEEG00000012993)	ENSEEEG00000012996	parp2 (ENSEEEG00000013018)	ENSEEEG00000013108	sdr39u1 (ENSEEEG00000013113)	ENSEEEG00000013114	MYADM (ENSEEEG00000013115)	ENSEEEG00000013117	mfsd14a2 (ENSEEEG00000013125)	insra (ENSEEEG00000013256)	arhgef18a (ENSEEEG00000015375)	sppl2 (ENSEEEG00000015387)	ENSEEEG00000015653 #22	ENSEEEG00000015656	prkci (ENSEEEG00000015700)	ENSEEEG00000016292	nadkb (ENSEEEG00000016295)	sec62 (ENSEEEG00000016350)
Characoidei	ANCESTRAL SPECIES	209														ENSGT00940000157375.d	ENSGT00940000158753	ENSGT00940000153424.a.a.d #22	ENSGT00390000001700.b	ENSGT00940000162952.d.b.b.a	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00390000015520	ENSGT00940000165431	ENSGT00390000002757	ENSGT00940000160075	ENSGT00510000046981.a.a	ENSGT00510000046981.b.b	ENSGT00940000155451	ENSGT00390000010993	ENSGT00940000155528.s.b	ENSGT00940000164644	ENSGT00940000167061.i
Red-bellied piranha	MODERN SPECIES	638														arhgef18a (ENSPNAG00000010373)	sppl2 (ENSPNAG00000010446)	ENSPNAG00000010482 #22	ENSPNAG00000010496	ENSPNAG00000010518	ENSPNAG00000010542	prkci (ENSPNAG00000010579)	ENSPNAG00000010618	gpr160 (ENSPNAG00000010641)	nadkb (ENSPNAG00000010687)	sec62 (ENSPNAG00000010721)	samd7 (ENSPNAG00000010774)	apoda.1 (ENSPNAG00000010785)	copa (ENSPNAG00000010849)	pex19 (ENSPNAG00000010876)	elavl1a (ENSPNAG00000010909)	slc1a8b (ENSPNAG00000010973)
Mexicana tetra	MODERN SPECIES	7	amph (ENSAMXG00000006239)	otulinb (ENSAMXG00000006217)	ankhb (ENSAMXG00000030055)	mycb (ENSAMXG00000043266)	ENSAMXG00000038211	ENSAMXG00000040512	ENSAMXG00000033811	ENSAMXG00000042018	fam49ba (ENSAMXG00000012050)	ENSAMXG00000040799	asap1a (ENSAMXG00000012149)	ubtfl (ENSAMXG00000012391)	slc4a2a (ENSAMXG00000012634)	arhgef18a (ENSAMXG00000001648)	sppl2 (ENSAMXG00000001631)	ENSAMXG00000040439 #22	ENSAMXG00000030945	ENSAMXG00000001584	ENSAMXG00000006318	prkci (ENSAMXG00000006328)	ENSAMXG00000039107	gpr160 (ENSAMXG00000038458)	nadkb (ENSAMXG00000006340)	sec62 (ENSAMXG00000006343)	samd7 (ENSAMXG00000006356)	apoda.2 (ENSAMXG00000037620)	apoda.2 (ENSAMXG00000040832)	apoda.1 (ENSAMXG00000042696)	copa (ENSAMXG00000006369)	pex19 (ENSAMXG00000042534)	elavl1a (ENSAMXG00000031223)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
Cyprininae	ANCESTRAL SPECIES	71	ENSGT00940000154368.s.b.c	ENSGT00940000154368.s.a.a	ENSGT00950000183116.b.b.f	ENSGT00940000166346.a	ENSGT00940000158452.d	ENSGT00390000006103.c	ENSGT00390000000337.l	ENSGT00950000182966.C.b.a.m	ENSGT00940000160923.d	ENSGT00950000182933.C.i.a	ENSGT00940000156845.xc.a	ENSGT00940000164530.b	ENSGT00940000155404.i.a.b	ENSGT00940000157375.d.a	ENSGT00940000158753.c.b	ENSGT00940000153424.a.a.d #22	ENSGT00400000024256.h	ENSGT00390000001700.b.e	ENSGT00940000162952.d.b.b.a.b	ENSGT00940000153497.E.b	ENSGT00940000158435.db.b	ENSGT00390000015520.b	ENSGT00940000165431.a	ENSGT00390000002757.b	ENSGT00940000160075.d	ENSGT00510000046981.a.a.g	ENSGT00510000046981.b.b.a.a	ENSGT00940000155451.u	ENSGT00390000010993.r	ENSGT00940000154954.ob.b	ENSGT00940000155528.s.b.b
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	84	ENSGT00940000154368.s.b.c	ENSGT00940000154368.s.a.a	ENSGT00950000183116.b.b.f	ENSGT00940000166346.a	ENSGT00940000158452.d	ENSGT00390000006103.c	ENSGT00390000000337.l	ENSGT00950000182966.C.b.a.m	ENSGT00940000160923.d	ENSGT00950000182933.C.i.a	ENSGT00940000156845.xc.a	ENSGT00940000164530.b	ENSGT00940000155404.i.a.b	ENSGT00940000157375.d.a	ENSGT00940000158753.c.b	ENSGT00940000153424.a.a.d.a #22	ENSGT00400000024256.h	ENSGT00390000001700.b.e	ENSGT00940000162952.d.b.b.a.a	ENSGT00940000153497.E.b	ENSGT00940000158435.db.b	ENSGT00390000015520.b	ENSGT00940000165431.a	ENSGT00390000002757.b	ENSGT00940000160075.d	ENSGT00510000046981.a.a.g	ENSGT00510000046981.b.b.a.a	ENSGT00940000155451.u	ENSGT00390000010993.r	ENSGT00940000154954.ob.b	ENSGT00940000155528.s.b.b
Golden-line barbel	MODERN SPECIES	20	ENSSGRG00000007838	ENSSGRG00000007831	hbl4 (ENSSGRG00000007815)	cbln13 (ENSSGRG00000007813)	zgc:66427 (ENSSGRG00000007812)	ENSSGRG00000007811	sdr39u1 (ENSSGRG00000007808)	ENSSGRG00000007807	ENSSGRG00000007804	ENSSGRG00000007802	MYADM (ENSSGRG00000007796)	ENSSGRG00000007253	mfsd14a2 (ENSSGRG00000006981)	insra (ENSSGRG00000005852)	sppl2 (ENSSGRG00000005601)	ENSSGRG00000005562 #22	ENSSGRG00000005554	ENSSGRG00000005542	ENSSGRG00000005529	prkci (ENSSGRG00000002823)	SKIL (ENSSGRG00000002770)	gpr160 (ENSSGRG00000002768)	nadkb (ENSSGRG00000001352)	sec62 (ENSSGRG00000037213)	samd7 (ENSSGRG00000037212)	apoda.2 (ENSSGRG00000037206)	apoda.1 (ENSSGRG00000037205)	copa (ENSSGRG00000036780)	pex19 (ENSSGRG00000036776)	tspan37 (ENSSGRG00000036775)	elavl1a (ENSSGRG00000036750)
Common carp reference	MODERN SPECIES	21	hbl4 (ENSCCRG00000038558)	ENSCCRG00000038576	zgc:66427 (ENSCCRG00000038919)	parp2 (ENSCCRG00000038924)	ENSCCRG00000038760	sdr39u1 (ENSCCRG00000066943)	ltb4r2b (ENSCCRG00000038770)	ENSCCRG00000035955	ENSCCRG00000075747	ENSCCRG00000061728	ENSCCRG00000038786	mfsd14a2 (ENSCCRG00000074617)	insra (ENSCCRG00000039595)	arhgef18a (ENSCCRG00000013026)	sppl2 (ENSCCRG00000059137)	ENSCCRG00000032892 #22	ENSCCRG00000032883	ENSCCRG00000032888	ENSCCRG00000066649	prkci (ENSCCRG00000007495)	ENSCCRG00000013267	nadkb (ENSCCRG00000042598)	gpr160 (ENSCCRG00000020315)	sec62 (ENSCCRG00000004894)	samd7 (ENSCCRG00000020324)	apoda.2 (ENSCCRG00000063977)	apoda.1 (ENSCCRG00000020325)	copa (ENSCCRG00000029759)	pex19 (ENSCCRG00000029800)	elavl1a (ENSCCRG00000067682)	slc1a8b (ENSCCRG00000029815)
Cyprininae_a	ANCESTRAL SPECIES	145	ENSGT00950000183116.b.a.a.b.a.b.e.b	ENSGT00940000166346.b	ENSGT01050000244890.a.a.b	ENSGT00940000158452.c	ENSGT00390000006103.d	ENSGT00390000000337.k	ENSGT00950000182966.C.b.a.n	ENSGT00940000160923.c	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.b	ENSGT00950000182933.C.i.b	ENSGT00940000156845.xc.b	ENSGT00940000164530.a	ENSGT00940000155404.i.a.a	ENSGT00940000157375.d.b	ENSGT00940000158753.c.a	ENSGT00940000153424.a.a.d.b #22	ENSGT00390000001700.b.f	ENSGT00940000162952.d.b.b.a.b	ENSGT00940000153497.E.a	ENSGT00940000158435.db.a	ENSGT00390000015520.a	ENSGT00940000165431.b	ENSGT00390000002757.a	ENSGT00940000160075.c	ENSGT00510000046981.a.a.h.a	ENSGT00510000046981.a.a.h.b	ENSGT00510000046981.b.b.a.b	ENSGT00940000155451.v	ENSGT00390000010993.q	ENSGT00940000154954.ob.a	ENSGT00940000155528.s.b.a
Common carp reference	MODERN SPECIES	29	ENSCCRG00000065417	hbl4 (ENSCCRG00000062137)	zgc:66427 (ENSCCRG00000025860)	cbln13 (ENSCCRG00000061813)	parp2 (ENSCCRG00000038744)	ENSCCRG00000038942	sdr39u1 (ENSCCRG00000082837)	ltb4r2b (ENSCCRG00000039148)	ENSCCRG00000039152	ENSCCRG00000055373	ENSCCRG00000039170	mfsd14a2 (ENSCCRG00000058324)	insra (ENSCCRG00000029353)	arhgef18a (ENSCCRG00000029300)	sppl2 (ENSCCRG00000082537)	ENSCCRG00000079977 #22	ENSCCRG00000007428	ENSCCRG00000007431	prkci (ENSCCRG00000031723)	ENSCCRG00000020313	gpr160 (ENSCCRG00000064130)	nadkb (ENSCCRG00000005597)	sec62 (ENSCCRG00000064194)	ENSCCRG00000082654	ENSCCRG00000029821	apoda.1 (ENSCCRG00000029824)	copa (ENSCCRG00000020327)	copa (ENSCCRG00000029263)	pex19 (ENSCCRG00000074785)	tspan37 (ENSCCRG00000030291)	elavl1a (ENSCCRG00000058173)
Golden-line barbel	MODERN SPECIES	140	ENSSGRG00000039580	cbln13 (ENSSGRG00000039579)	zgc:66427 (ENSSGRG00000039577)	ENSSGRG00000039573	parp2 (ENSSGRG00000039563)	ENSSGRG00000039551	sdr39u1 (ENSSGRG00000039546)	ENSSGRG00000039543	ENSSGRG00000039540	MYADM (ENSSGRG00000039538)	ENSSGRG00000038238	mfsd14a2 (ENSSGRG00000038232)	insra (ENSSGRG00000034275)	arhgef18a (ENSSGRG00000034225)	sppl2 (ENSSGRG00000033955)	ENSSGRG00000033950 #22	ENSSGRG00000033949	ENSSGRG00000033948	prkci (ENSSGRG00000033117)	SKIL (ENSSGRG00000033098)	gpr160 (ENSSGRG00000033097)	nadkb (ENSSGRG00000032808)	sec62 (ENSSGRG00000032800)	samd7 (ENSSGRG00000032799)	apoda.2 (ENSSGRG00000032784)	copa (ENSSGRG00000032664)	pex19 (ENSSGRG00000032662)	tspan37 (ENSSGRG00000032661)	elavl1a (ENSSGRG00000032628)	slc1a8b (ENSSGRG00000032322)	zgc:101744 (ENSSGRG00000032315)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.d #22
P. kingsleyae	MODERN SPECIES	4	ENSPKIG00000006717	ENSPKIG00000006674	MAST3 (ENSPKIG00000006629)	PIK3R2 (ENSPKIG00000006516)	ifi30 (ENSPKIG00000006449)	ENSPKIG00000006292	rab3aa (ENSPKIG00000006212)	jund (ENSPKIG00000006193)	lsm4 (ENSPKIG00000006154)	pgpep1 (ENSPKIG00000006118)	upf1 (ENSPKIG00000006069)	ddx49 (ENSPKIG00000006013)	homer3b (ENSPKIG00000005994)	uba52 (ENSPKIG00000005976)	arrdc2 (ENSPKIG00000005934)	ENSPKIG00000005889 #22	ENSPKIG00000005863	ENSPKIG00000005851	ENSPKIG00000005836	wdr18 (ENSPKIG00000005770)	GRIN3B (ENSPKIG00000005730)	TMEM259 (ENSPKIG00000005713)	med16 (ENSPKIG00000005645)	plppr3a (ENSPKIG00000005596)
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Spotted gar	MODERN SPECIES	669	GCNT3 (ENSLOCG00000017958)	ENSLOCG00000014799	ENSLOCG00000014800	OTUD7A (ENSLOCG00000014801)	klf13 (ENSLOCG00000014806)	trpm1b (ENSLOCG00000014808)	RAB8B (ENSLOCG00000014811) #28	rps27l (ENSLOCG00000014815)	DNAJA4 (ENSLOCG00000014817)	ACSBG1 (ENSLOCG00000014820)	idh3a (ENSLOCG00000014826)	lrrc61 (ENSLOCG00000014831)	cib2 (ENSLOCG00000014834)	SH2D7 (ENSLOCG00000014836)	TBC1D2B (ENSLOCG00000014842)	ENSLOCG00000014848 ##22	HERC1 (ENSLOCG00000014851) #23	ENSLOCG00000014863	fbxl22 (ENSLOCG00000014866) #24	usp3 (ENSLOCG00000014869) #25	si:dkeyp-73b11.8 (ENSLOCG00000014877)	CA12 (ENSLOCG00000014880) #26	aph1b (ENSLOCG00000014889) #27	MAN2C1 (ENSLOCG00000014890)	neil1 (ENSLOCG00000014898)	commd4 (ENSLOCG00000014904)	sema7a (ENSLOCG00000014908)	islr2 (ENSLOCG00000017959)	stra6 (ENSLOCG00000014914)	CCDC33 (ENSLOCG00000014922)	cyp11a1.1 (ENSLOCG00000014925)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Cyprinoidei	ANCESTRAL SPECIES	49	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00550000074844	ENSGT00940000154487.B	ENSGT00390000008140.k.b	ENSGT01030000234648.a.b.a.a.b.cb.a	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	388		ENSGT00940000158531.b	ENSGT00940000159331.b.z.b	ENSGT00940000158999.i	ENSGT00940000164815.b.k	ENSGT00940000155024.a.a.c	ENSGT00940000155363.v.b.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707.i	ENSGT00940000160380.q	ENSGT00950000182989.A.a.i	ENSGT00390000006479.g	ENSGT00940000157327.o.a.a	ENSGT00940000160977.e.b.a	ENSGT00940000157737.f	ENSGT00940000153424.a.a.c.a.a.a ##22	ENSGT00940000164936.b.d	ENSGT00390000003748.c #24	ENSGT00940000157850.b #25	ENSGT00940000168688	ENSGT00940000159282.d #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516.o	ENSGT00940000158358.a.b	ENSGT00550000074844.lb.a	ENSGT00550000074844.mb	ENSGT00940000154487.B	ENSGT00390000008140.k.b.a	ENSGT01030000234648.a.b.a.a.b.cb.a.d
Goldfish	MODERN SPECIES	17	ENSCARG00000066293	OTUD7A (ENSCARG00000066223)	klf13 (ENSCARG00000066202)	trpm1b (ENSCARG00000065913)	ENSCARG00000065830 #28	rps27l (ENSCARG00000065803)	DNAJA4 (ENSCARG00000065798)	ENSCARG00000065791	ENSCARG00000065784	idh3a (ENSCARG00000065432)	lrrc61 (ENSCARG00000065406)	cib2 (ENSCARG00000065392)	SH2D7 (ENSCARG00000065379)	TBC1D2B (ENSCARG00000065340)	ENSCARG00000065332	ENSCARG00000065296 ##22	ENSCARG00000065283	fbxl22 (ENSCARG00000065278) #24	usp3 (ENSCARG00000063894) #25	ENSCARG00000063810	CA12 (ENSCARG00000063767) #26	CA12 (ENSCARG00000063706) #26	ENSCARG00000063605	neil1 (ENSCARG00000063580)	commd4 (ENSCARG00000063505)	sema7a (ENSCARG00000063473)	dldh (ENSCARG00000063076)	ENSCARG00000063032	znf800a (ENSCARG00000063017)	grm8b (ENSCARG00000062791)	ENSCARG00000062780
Cyprininae_a	ANCESTRAL SPECIES	16	ENSGT00940000160522.c.a	ENSGT00940000158531.b	ENSGT00940000159331.b.z.b	ENSGT00940000158999.i	ENSGT00940000164815.b.k	ENSGT00940000155024.a.a.c	ENSGT00940000155363.v.b.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707.i	ENSGT00940000160380.q.c	ENSGT00950000182989.A.a.i	ENSGT00390000006479.g	ENSGT00940000157327.o.a.a	ENSGT00940000160977.e.b.a	ENSGT00940000157737.f	ENSGT00940000153424.a.a.c.a.a.a ##22	ENSGT00940000164936.b.d	ENSGT00390000003748.c #24	ENSGT00940000157850.b #25	ENSGT00940000168688	ENSGT00940000159282.d #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516.o	ENSGT00940000158358.a.b	ENSGT00550000074844.lb.a	ENSGT00940000154487.B	ENSGT00390000008140.k.b.a	ENSGT01030000234648.a.b.a.a.b.cb.a.d	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a
Common carp reference	MODERN SPECIES	37	GCNT3 (ENSCCRG00000051086)	bnip2 (ENSCCRG00000068927)	ENSCCRG00000065863	ENSCCRG00000061344	klf13 (ENSCCRG00000057191)	trpm1b (ENSCCRG00000009992)	ENSCCRG00000071189 #28	ENSCCRG00000054733	DNAJA4 (ENSCCRG00000009928)	ACSBG1 (ENSCCRG00000064891)	idh3a (ENSCCRG00000076461)	lrrc61 (ENSCCRG00000017169)	cib2 (ENSCCRG00000079843)	SH2D7 (ENSCCRG00000017223)	TBC1D2B (ENSCCRG00000017225)	ENSCCRG00000075352 ##22	ENSCCRG00000060964	fbxl22 (ENSCCRG00000079012) #24	usp3 (ENSCCRG00000070057) #25	CA12 (ENSCCRG00000082665) #26	neil1 (ENSCCRG00000042035)	MAN2C1 (ENSCCRG00000042025)	commd4 (ENSCCRG00000027466)	sema7a (ENSCCRG00000042058)	dldh (ENSCCRG00000054504)	ENSCCRG00000044951	znf800a (ENSCCRG00000068099)	grm8b (ENSCCRG00000019553)	pot1 (ENSCCRG00000026331)	spam1 (ENSCCRG00000026316)	HYAL4 (ENSCCRG00000060285)
Golden-line barbel	MODERN SPECIES	256	foxb1a (ENSSGRG00000022615)	bnip2 (ENSSGRG00000022604)	GCNT3 (ENSSGRG00000022599)	ENSSGRG00000022593	klf13 (ENSSGRG00000022592)	trpm1b (ENSSGRG00000021994)	ENSSGRG00000021900 #28	rps27l (ENSSGRG00000021860)	DNAJA4 (ENSSGRG00000021686)	ACSBG1 (ENSSGRG00000021562)	idh3a (ENSSGRG00000021479)	lrrc61 (ENSSGRG00000021474)	cib2 (ENSSGRG00000021471)	SH2D7 (ENSSGRG00000021469)	TBC1D2B (ENSSGRG00000021466)	ENSSGRG00000021183 ##22	fbxl22 (ENSSGRG00000021179) #24	usp3 (ENSSGRG00000020452) #25	ENSSGRG00000020439	CA12 (ENSSGRG00000020288) #26	ENSSGRG00000020278	neil1 (ENSSGRG00000020277)	commd4 (ENSSGRG00000020231)	sema7a (ENSSGRG00000020226)	dldh (ENSSGRG00000020161)	ENSSGRG00000020160	znf800a (ENSSGRG00000020159)	grm8b (ENSSGRG00000020158)	pot1 (ENSSGRG00000020157)	GPR37 (ENSSGRG00000020138)	spam1 (ENSSGRG00000020136)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a.b ##22
Cyprininae_a	ANCESTRAL SPECIES	361	ENSGT00390000006883.c	ENSGT00940000154257.a.c	ENSGT00940000158531.a	ENSGT00940000159331.b.y	ENSGT00730000111835	ENSGT00940000158999.j	ENSGT00940000164815.b.l	ENSGT00940000155024.a.a.d	ENSGT00940000155363.v.b.a #28	ENSGT00940000160380.r	ENSGT00950000182989.A.a.j	ENSGT00390000006479.h	ENSGT00940000157327.o.a.b	ENSGT00940000160977.e.b.b	ENSGT00940000157737.e	ENSGT00940000153424.a.a.c.a.a.b ##22	ENSGT00940000164936.b.c	ENSGT00390000003748.d #24	ENSGT00940000157850.a #25	ENSGT00390000015516.p	ENSGT00940000158358.a.a	ENSGT00550000074844.lb.b	ENSGT00390000008140.k.b.b	ENSGT01030000234648.a.b.a.a.b.cb.a.c
Golden-line barbel	MODERN SPECIES	30												lrrc61 (ENSSGRG00000042715)	cib2 (ENSSGRG00000042716)	ENSSGRG00000042718	TBC1D2B (ENSSGRG00000042721)	ENSSGRG00000042722 ##22	ENSSGRG00000042723	usp3 (ENSSGRG00000042747) #25	ENSSGRG00000043496	ENSSGRG00000043497 #26	MAN2C1 (ENSSGRG00000043527)	ENSSGRG00000043586	commd4 (ENSSGRG00000043587)	sema7a (ENSSGRG00000043594)	dldh (ENSSGRG00000043599)	znf800a (ENSSGRG00000043670)	grm8b (ENSSGRG00000043671)	pot1 (ENSSGRG00000043676)	HYAL4 (ENSSGRG00000043690)	hyal6 (ENSSGRG00000043691)	hyal6 (ENSSGRG00000043692)
Common carp reference	MODERN SPECIES	33	ENSCCRG00000058379	ENSCCRG00000027426	klf13 (ENSCCRG00000027380)	trpm1b (ENSCCRG00000010302)	ENSCCRG00000010223 #28	rps27l (ENSCCRG00000055164)	DNAJA4 (ENSCCRG00000053810)	ENSCCRG00000072899	ACSBG1 (ENSCCRG00000067574)	idh3a (ENSCCRG00000082049)	lrrc61 (ENSCCRG00000076073)	ENSCCRG00000054971	cib2 (ENSCCRG00000017221)	ENSCCRG00000003467	TBC1D2B (ENSCCRG00000079712)	ENSCCRG00000017232 ##22	ENSCCRG00000068480	fbxl22 (ENSCCRG00000071041) #24	ENSCCRG00000049198	ENSCCRG00000064396 #26	usp3 (ENSCCRG00000062678) #25	ENSCCRG00000057867	commd4 (ENSCCRG00000058057)	ENSCCRG00000027470	sema7a (ENSCCRG00000060533)	dldh (ENSCCRG00000062986)	znf800a (ENSCCRG00000049169)	grm8b (ENSCCRG00000019516)	GPR37 (ENSCCRG00000052162)	HYAL4 (ENSCCRG00000067499)	hyal6 (ENSCCRG00000016409)
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Electric eel	MODERN SPECIES	67	GCNT3 (ENSEEEG00000000760)	ENSEEEG00000000767	OTUD7A (ENSEEEG00000000783)	klf13 (ENSEEEG00000000798)	ENSEEEG00000000804	ENSEEEG00000000820	ENSEEEG00000000827 #28	rps27l (ENSEEEG00000000849)	DNAJA4 (ENSEEEG00000000871)	ACSBG1 (ENSEEEG00000000879)	idh3a (ENSEEEG00000000906)	lrrc61 (ENSEEEG00000001446)	cib2 (ENSEEEG00000001447)	ENSEEEG00000001449	TBC1D2B (ENSEEEG00000001451)	ENSEEEG00000001453 ##22	ENSEEEG00000001455	fbxl22 (ENSEEEG00000001456) #24	usp3 (ENSEEEG00000001460) #25	ENSEEEG00000001656	CA12 (ENSEEEG00000001658) #26	MAN2C1 (ENSEEEG00000001663)	ENSEEEG00000001673	commd4 (ENSEEEG00000001678)	sema7a (ENSEEEG00000001715)	islr2 (ENSEEEG00000001718)	stra6 (ENSEEEG00000001721)	ENSEEEG00000001725	cyp11a1.1 (ENSEEEG00000001748)	stoml1 (ENSEEEG00000001797)	nr2e3 (ENSEEEG00000001799)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Atlantic herring	MODERN SPECIES	19	ENSCHAG00000013428	OTUD7A (ENSCHAG00000013399)	klf13 (ENSCHAG00000013379)	ENSCHAG00000013364	trpm1b (ENSCHAG00000010296)	RAB8B (ENSCHAG00000010155) #28	rps27l (ENSCHAG00000010048)	ACSBG1 (ENSCHAG00000009594)	DNAJA4 (ENSCHAG00000009400)	idh3a (ENSCHAG00000008118)	lrrc61 (ENSCHAG00000007974)	cib2 (ENSCHAG00000007931)	ENSCHAG00000007928	ENSCHAG00000007916	TBC1D2B (ENSCHAG00000007897)	ENSCHAG00000007717 ##22	ENSCHAG00000007699	fbxl22 (ENSCHAG00000007677) #24	ENSCHAG00000007655	usp3 (ENSCHAG00000006657) #25	ENSCHAG00000006620	CA12 (ENSCHAG00000006342) #26	ENSCHAG00000006328	MAN2C1 (ENSCHAG00000005362)	neil1 (ENSCHAG00000005274)	commd4 (ENSCHAG00000005256)	sema7a (ENSCHAG00000005220)	islr2 (ENSCHAG00000005198)	stra6 (ENSCHAG00000004961)	ENSCHAG00000004932	ENSCHAG00000004915
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619	ENSGT00940000163168	ENSGT00940000173891	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235403	ENSGT00940000155619.c.a	ENSGT01030000235163	ENSGT00940000155619.d	ENSGT00940000163168	ENSGT00940000155619.c.b	ENSGT00940000173891	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Cottioidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Stickleback	MODERN SPECIES	14	isl2a (ENSGACG00000010533)	scaper (ENSGACG00000010509)	rcn2 (ENSGACG00000010496)	pstpip1a (ENSGACG00000010485)	tspan3a (ENSGACG00000010459)	si:dkey-24l11.2 (ENSGACG00000010453)	ch25hl1.1 (ENSGACG00000010449)	kti12 (ENSGACG00000010443)	trpm1b (ENSGACG00000010422)	ENSGACG00000010417 #28	DNAJA4 (ENSGACG00000010346)	IDH3A (ENSGACG00000010244)	lrrc61 (ENSGACG00000010239)	cib2 (ENSGACG00000010230)	TBC1D2B (ENSGACG00000010224)	ENSGACG00000010201 ##22	fbxl22 (ENSGACG00000010198) #24	ENSGACG00000010197	FGD6 (ENSGACG00000010186)	nr2c1 (ENSGACG00000010174)	tmcc3 (ENSGACG00000010168)	ENSGACG00000010163	FLNC (ENSGACG00000010114)	ENSGACG00000010094	parietopsin (ENSGACG00000010091)	NT5DC3 (ENSGACG00000010077)	hsp90b1 (ENSGACG00000010067)	PRKAR2B (ENSGACG00000010060)	hbp1 (ENSGACG00000010054)	ENSGACG00000010052	GPR22 (ENSGACG00000010047)
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Pike perch	MODERN SPECIES	6	bnip2 (ENSSLUG00000015323)	GCNT3 (ENSSLUG00000015340)	OTUD7A (ENSSLUG00000015362)	klf13 (ENSSLUG00000015415)	ENSSLUG00000015422	trpm1b (ENSSLUG00000015448)	RAB8B (ENSSLUG00000015517) #28	rps27l (ENSSLUG00000015544)	DNAJA4 (ENSSLUG00000015588)	ACSBG1 (ENSSLUG00000015655)	IDH3A (ENSSLUG00000016775)	lrrc61 (ENSSLUG00000017034)	cib2 (ENSSLUG00000017046)	SH2D7 (ENSSLUG00000017055)	TBC1D2B (ENSSLUG00000017069)	ENSSLUG00000017111 ##22	ENSSLUG00000017137	fbxl22 (ENSSLUG00000017143) #24	usp3 (ENSSLUG00000017173) #25	ENSSLUG00000017755	CA12 (ENSSLUG00000017761) #26	MAN2C1 (ENSSLUG00000017800)	neil1 (ENSSLUG00000017871)	commd4 (ENSSLUG00000017867)	sema7a (ENSSLUG00000017872)	islr2 (ENSSLUG00000017877)	stra6 (ENSSLUG00000017890)	cyp11a1.1 (ENSSLUG00000017962)	stoml1 (ENSSLUG00000018482)	nr2e3 (ENSSLUG00000018489)	hexa (ENSSLUG00000018512)
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
European seabass	MODERN SPECIES	19	anxa2a (ENSDLAG00005018840)	foxb1a (ENSDLAG00005026829)	bnip2 (ENSDLAG00005018986)	GCNT3 (ENSDLAG00005019032)	ENSDLAG00005019039	klf13 (ENSDLAG00005026636)	trpm1b (ENSDLAG00005019249)	DNAJA4 (ENSDLAG00005026732)	rps27l (ENSDLAG00005028254)	ACSBG1 (ENSDLAG00005021894)	IDH3A (ENSDLAG00005022478)	lrrc61 (ENSDLAG00005028573)	cib2 (ENSDLAG00005032151)	ENSDLAG00005022513	TBC1D2B (ENSDLAG00005022518)	ENSDLAG00005022549 ##22	ENSDLAG00005030483	fbxl22 (ENSDLAG00005022572) #24	usp3 (ENSDLAG00005022597) #25	ENSDLAG00005022822	CA12 (ENSDLAG00005022828) #26	ENSDLAG00005022859	neil1 (ENSDLAG00005023089)	sema7a (ENSDLAG00005023103)	islr2 (ENSDLAG00005023110)	stra6 (ENSDLAG00005023124)	ENSDLAG00005023196	cyp11a1.1 (ENSDLAG00005001579)	nr2e3 (ENSDLAG00005001714)	hexa (ENSDLAG00005001862)	arih1 (ENSDLAG00005026838)
Large yellow croaker	MODERN SPECIES	492	GCNT3 (ENSLCRG00005017487)	GCNT3 (ENSLCRG00005017485)	ENSLCRG00005017481	OTUD7A (ENSLCRG00005017480)	klf13 (ENSLCRG00005017479)	trpm1b (ENSLCRG00005012671)	ENSLCRG00005012626 #28	rps27l (ENSLCRG00005012623)	DNAJA4 (ENSLCRG00005012622)	ACSBG1 (ENSLCRG00005012147)	IDH3A (ENSLCRG00005012138)	lrrc61 (ENSLCRG00005012136)	cib2 (ENSLCRG00005012134)	ENSLCRG00005012133	TBC1D2B (ENSLCRG00005012124)	ENSLCRG00005012039 ##22	ENSLCRG00005012035	fbxl22 (ENSLCRG00005012034) #24	usp3 (ENSLCRG00005011262) #25	ENSLCRG00005011256	CA12 (ENSLCRG00005011255) #26	MAN2C1 (ENSLCRG00005011220)	neil1 (ENSLCRG00005011212)	commd4 (ENSLCRG00005011208)	sema7a (ENSLCRG00005011205)	islr2 (ENSLCRG00005011203)	stra6 (ENSLCRG00005011201)	ENSLCRG00005011197	cyp11a1.1 (ENSLCRG00005010309)	stoml1 (ENSLCRG00005010303)	nr2e3 (ENSLCRG00005010302)
Gilthead seabream	MODERN SPECIES	22	foxb1a (ENSSAUG00010023987)	bnip2 (ENSSAUG00010023991)	GCNT3 (ENSSAUG00010023996)	OTUD7A (ENSSAUG00010004134)	klf13 (ENSSAUG00010004233)	trpm1b (ENSSAUG00010004352)	ENSSAUG00010006252 #28	rps27l (ENSSAUG00010006255)	DNAJA4 (ENSSAUG00010006263)	ACSBG1 (ENSSAUG00010006270)	IDH3A (ENSSAUG00010006298)	lrrc61 (ENSSAUG00010006544)	cib2 (ENSSAUG00010006546)	ENSSAUG00010006548	TBC1D2B (ENSSAUG00010006552)	ENSSAUG00010006561 ##22	ENSSAUG00010006595	fbxl22 (ENSSAUG00010006599) #24	usp3 (ENSSAUG00010006619) #25	ENSSAUG00010007237	CA12 (ENSSAUG00010007240) #26	MAN2C1 (ENSSAUG00010007286)	neil1 (ENSSAUG00010007360)	commd4 (ENSSAUG00010007361)	sema7a (ENSSAUG00010007363)	islr2 (ENSSAUG00010007366)	stra6 (ENSSAUG00010007368)	ENSSAUG00010007372	cyp11a1.1 (ENSSAUG00010007387)	nr2e3 (ENSSAUG00010007491)	hexa (ENSSAUG00010007538)
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Fugu	MODERN SPECIES	21	anxa2a (ENSTRUG00000011041)	FOXB1 (ENSTRUG00000031684)	bnip2 (ENSTRUG00000011311)	GCNT3 (ENSTRUG00000011586)	OTUD7A (ENSTRUG00000011601)	klf13 (ENSTRUG00000011759)	trpm1b (ENSTRUG00000011806)	ENSTRUG00000026217 #28	rps27l (ENSTRUG00000020576)	DNAJA4 (ENSTRUG00000012457)	IDH3A (ENSTRUG00000012598)	lrrc61 (ENSTRUG00000012657)	cib2 (ENSTRUG00000027307)	ENSTRUG00000020102	TBC1D2B (ENSTRUG00000012809)	ENSTRUG00000012994 ##22	ENSTRUG00000020001	fbxl22 (ENSTRUG00000013054) #24	usp3 (ENSTRUG00000013067) #25	ENSTRUG00000027381	CA12 (ENSTRUG00000013194) #26	commd4 (ENSTRUG00000013548)	sema7a (ENSTRUG00000013566)	stra6 (ENSTRUG00000019577)	cyp11a1.1 (ENSTRUG00000013804)	stoml1 (ENSTRUG00000019856)	arih1 (ENSTRUG00000013998)	ENSTRUG00000022549	ppcdc (ENSTRUG00000014075)	hacd3 (ENSTRUG00000031290)	ints14 (ENSTRUG00000014091)
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Yellowtail amberjack	MODERN SPECIES	3044	foxb1a (ENSSLDG00000024809)	bnip2 (ENSSLDG00000024780)	GCNT3 (ENSSLDG00000024768)	OTUD7A (ENSSLDG00000024744)	klf13 (ENSSLDG00000024739)	trpm1b (ENSSLDG00000024680)	ENSSLDG00000024653 #28	rps27l (ENSSLDG00000024647)	DNAJA4 (ENSSLDG00000024627)	ACSBG1 (ENSSLDG00000024574)	IDH3A (ENSSLDG00000024537)	lrrc61 (ENSSLDG00000024529)	cib2 (ENSSLDG00000024521)	SH2D7 (ENSSLDG00000024514)	TBC1D2B (ENSSLDG00000024492)	ENSSLDG00000024401 ##22	ENSSLDG00000024383	fbxl22 (ENSSLDG00000024375) #24	usp3 (ENSSLDG00000024349) #25	ENSSLDG00000024335	CA12 (ENSSLDG00000024254) #26	ENSSLDG00000024186	neil1 (ENSSLDG00000024179)	commd4 (ENSSLDG00000024172)	sema7a (ENSSLDG00000024152)	islr2 (ENSSLDG00000024147)	stra6 (ENSSLDG00000024104)	ENSSLDG00000024086	cyp11a1.1 (ENSSLDG00000024083)	stoml1 (ENSSLDG00000024076)	nr2e3 (ENSSLDG00000023960)
Greater amberjack	MODERN SPECIES	82	foxb1a (ENSSDUG00000009594)	bnip2 (ENSSDUG00000009516)	GCNT3 (ENSSDUG00000009480)	OTUD7A (ENSSDUG00000009423)	klf13 (ENSSDUG00000009407)	trpm1b (ENSSDUG00000009352)	ENSSDUG00000009333 #28	rps27l (ENSSDUG00000009321)	DNAJA4 (ENSSDUG00000009307)	ACSBG1 (ENSSDUG00000009228)	IDH3A (ENSSDUG00000009195)	lrrc61 (ENSSDUG00000009180)	cib2 (ENSSDUG00000009160)	ENSSDUG00000009111	TBC1D2B (ENSSDUG00000009055)	ENSSDUG00000008929 ##22	ENSSDUG00000008890	fbxl22 (ENSSDUG00000008886) #24	usp3 (ENSSDUG00000008817) #25	ENSSDUG00000008802	CA12 (ENSSDUG00000008779) #26	MAN2C1 (ENSSDUG00000008735)	neil1 (ENSSDUG00000008709)	commd4 (ENSSDUG00000008698)	sema7a (ENSSDUG00000008675)	islr2 (ENSSDUG00000008671)	stra6 (ENSSDUG00000008630)	ENSSDUG00000008592	cyp11a1.1 (ENSSDUG00000008603)	stoml1 (ENSSDUG00000008576)	nr2e3 (ENSSDUG00000008558)
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Tongue sole	MODERN SPECIES	16	snx22 (ENSCSEG00000003037) #19	tube1 (ENSCSEG00000003023)	borcs5 (ENSCSEG00000003020)	LINGO1 (ENSCSEG00000003015)	hmg20a (ENSCSEG00000003007)	klf13 (ENSCSEG00000003003)	trpm1b (ENSCSEG00000002518)	ENSCSEG00000002499 #28	rps27l (ENSCSEG00000002497)	DNAJA4 (ENSCSEG00000002459)	IDH3A (ENSCSEG00000002448)	lrrc61 (ENSCSEG00000002442)	cib2 (ENSCSEG00000002434)	ENSCSEG00000002429	TBC1D2B (ENSCSEG00000002419)	ENSCSEG00000002398 ##22	ENSCSEG00000002393	fbxl22 (ENSCSEG00000002390) #24	usp3 (ENSCSEG00000002359) #25	ENSCSEG00000002352	CA12 (ENSCSEG00000002347) #26	MAN2C1 (ENSCSEG00000002320)	bmt2 (ENSCSEG00000002312)	TMEM168 (ENSCSEG00000002308)	ptdss2 (ENSCSEG00000002299)	ENSCSEG00000002298	ENSCSEG00000002294	ifitm5 (ENSCSEG00000002289)	cat (ENSCSEG00000002281)	syt12 (ENSCSEG00000002273)	PEAK1 (ENSCSEG00000002269)
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Mangrove rivulus	MODERN SPECIES	6	GCNT3 (ENSKMAG00000017914)	GCNT3 (ENSKMAG00000017927)	GCNT3 (ENSKMAG00000017942)	GCNT3 (ENSKMAG00000017967)	ENSKMAG00000017999	OTUD7A (ENSKMAG00000018027)	klf13 (ENSKMAG00000018092)	trpm1b (ENSKMAG00000018107)	RAB8B (ENSKMAG00000018169) #28	DNAJA4 (ENSKMAG00000018201)	IDH3A (ENSKMAG00000018239)	lrrc61 (ENSKMAG00000018282)	cib2 (ENSKMAG00000018313)	ENSKMAG00000018333	TBC1D2B (ENSKMAG00000018360)	ENSKMAG00000018440 ##22	ENSKMAG00000018481	fbxl22 (ENSKMAG00000018505) #24	usp3 (ENSKMAG00000018529) #25	si:dkeyp-73b11.8 (ENSKMAG00000018597)	CA12 (ENSKMAG00000018610) #26	MAN2C1 (ENSKMAG00000018638)	neil1 (ENSKMAG00000018738)	commd4 (ENSKMAG00000018762)	sema7a (ENSKMAG00000018795)	islr2 (ENSKMAG00000018821)	stra6 (ENSKMAG00000018839)	cyp11a1.1 (ENSKMAG00000018869)	stoml1 (ENSKMAG00000018954)	nr2e3 (ENSKMAG00000018965)	hexa (ENSKMAG00000019076)
Turquoise killifish	MODERN SPECIES	1622	ENSNFUG00015013261	NARG2 (ENSNFUG00015013256)	anxa2a (ENSNFUG00015013237)	OLA.4950 (ENSNFUG00015013233)	BNIP2 (ENSNFUG00015013230)	GCNT3 (ENSNFUG00015013222)	OTUD7A (ENSNFUG00015013204)	KLF13 (ENSNFUG00015013198)	trpm1b (ENSNFUG00015011298)	RAB8B (ENSNFUG00015011128) #28	DNAJA4 (ENSNFUG00015011108)	lrrc61 (ENSNFUG00015011049)	cib2 (ENSNFUG00015011023)	ENSNFUG00015011004	TBC1D2B (ENSNFUG00015010962)	DAPK2 (ENSNFUG00015010819) ##22	C25H1ORF51 (ENSNFUG00015010793)	fbxl22 (ENSNFUG00015010787) #24	usp3 (ENSNFUG00015010682) #25	si:dkeyp-73b11.8 (ENSNFUG00015010643)	CA12 (ENSNFUG00015010638) #26	ELAVL1 (ENSNFUG00015010628)	ENSNFUG00015010623	TMEM259 (ENSNFUG00015010543)	MAN2C1 (ENSNFUG00015010412)	neil1 (ENSNFUG00015010400)	COMMD4 (ENSNFUG00015010389)	sema7a (ENSNFUG00015010368)	islr2 (ENSNFUG00015010359)	STRA6 (ENSNFUG00015010256)	ENSNFUG00015010235
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
P. nyererei	MODERN SPECIES	330	bnip2 (ENSPNYG00000012083)	GCNT3 (ENSPNYG00000012111)	OTUD7A (ENSPNYG00000012142)	klf13 (ENSPNYG00000012175)	ENSPNYG00000012185	trpm1b (ENSPNYG00000012214)	RAB8B (ENSPNYG00000012303) #28	rps27l (ENSPNYG00000012382)	DNAJA4 (ENSPNYG00000012347)	ACSBG1 (ENSPNYG00000012411)	IDH3A (ENSPNYG00000012450)	lrrc61 (ENSPNYG00000012493)	cib2 (ENSPNYG00000012561)	SH2D7 (ENSPNYG00000012595)	TBC1D2B (ENSPNYG00000012627)	ENSPNYG00000012704 ##22	ENSPNYG00000012745	fbxl22 (ENSPNYG00000012757) #24	usp3 (ENSPNYG00000012773) #25	ENSPNYG00000012790	ENSPNYG00000012807	ENSPNYG00000012816	CA12 (ENSPNYG00000012827) #26	MAN2C1 (ENSPNYG00000012842)	neil1 (ENSPNYG00000012897)	commd4 (ENSPNYG00000012913)	sema7a (ENSPNYG00000012941)	islr2 (ENSPNYG00000012974)	stra6 (ENSPNYG00000013022)	ENSPNYG00000013118	cyp11a1.1 (ENSPNYG00000013158)
Nile tilapia	MODERN SPECIES	19	GCNT3 (ENSONIG00000041639)	ENSONIG00000036269	ENSONIG00000034599	OTUD7A (ENSONIG00000015307)	klf13 (ENSONIG00000015310)	trpm1b (ENSONIG00000015312)	RAB8B (ENSONIG00000028161) #28	rps27l (ENSONIG00000015324)	DNAJA4 (ENSONIG00000015325)	ACSBG1 (ENSONIG00000015332)	IDH3A (ENSONIG00000042958)	lrrc61 (ENSONIG00000040114)	cib2 (ENSONIG00000015339)	ENSONIG00000039709	tbc1d2b (ENSONIG00000015341)	ENSONIG00000015345 ##22	ENSONIG00000026117	fbxl22 (ENSONIG00000015350) #24	usp3 (ENSONIG00000015351) #25	si:dkeyp-73b11.8 (ENSONIG00000035882)	ENSONIG00000015361	CA12 (ENSONIG00000015363) #26	MAN2C1 (ENSONIG00000015370)	neil1 (ENSONIG00000015377)	commd4 (ENSONIG00000015379)	sema7a (ENSONIG00000015382)	ENSONIG00000031360	islr2 (ENSONIG00000020970)	stra6 (ENSONIG00000015383)	ENSONIG00000015388	cyp11a1.1 (ENSONIG00000015391)
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.a ##22
Clown anemonefish	MODERN SPECIES	2033					klf13 (ENSAOCG00000005705)	trpm1b (ENSAOCG00000002717)	ENSAOCG00000005618 #28	rps27l (ENSAOCG00000005584)	DNAJA4 (ENSAOCG00000005567)	ACSBG1 (ENSAOCG00000005541)	IDH3A (ENSAOCG00000002096)	lrrc61 (ENSAOCG00000005397)	cib2 (ENSAOCG00000000255)	SH2D7 (ENSAOCG00000005374)	TBC1D2B (ENSAOCG00000005362)	ENSAOCG00000005331 ##22
Pinecone sodierfish	MODERN SPECIES	20	GCNT3 (ENSMMDG00005012455)	ENSMMDG00005012450	klf13 (ENSMMDG00005012447)	ENSMMDG00005012443	trpm1b (ENSMMDG00005012336)	RAB8B (ENSMMDG00005012321) #28	rps27l (ENSMMDG00005012304)	DNAJA4 (ENSMMDG00005012302)	ACSBG1 (ENSMMDG00005012292)	IDH3A (ENSMMDG00005012240)	lrrc61 (ENSMMDG00005012148)	cib2 (ENSMMDG00005012140)	ENSMMDG00005012136	ENSMMDG00005012133	TBC1D2B (ENSMMDG00005012130)	ENSMMDG00005012127 ##22	ENSMMDG00005012125	fbxl22 (ENSMMDG00005012123) #24	usp3 (ENSMMDG00005011369) #25	ENSMMDG00005011342	CA12 (ENSMMDG00005011332) #26	MAN2C1 (ENSMMDG00005011318)	neil1 (ENSMMDG00005011310)	commd4 (ENSMMDG00005011270)	sema7a (ENSMMDG00005011266)	ENSMMDG00005011262	islr2 (ENSMMDG00005011261)	islr2 (ENSMMDG00005011258)	stra6 (ENSMMDG00005011236)	cyp11a1.1 (ENSMMDG00005010401)	stoml1 (ENSMMDG00005010381)
Osteoglossiformes	ANCESTRAL SPECIES	13	ENSGT00940000157387.i	ENSGT00390000006883	ENSGT00940000154257.c	ENSGT00940000160522.c.b	ENSGT00390000014572	ENSGT00940000164815.b.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707.a	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327.o.a.f	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000155907.b #23	ENSGT00940000164936.b.fb	ENSGT00940000157850 #25	ENSGT00940000159282.a #26	ENSGT00390000002049.c.b #27	ENSGT00940000160967	ENSGT00940000153246.a.a.a	ENSGT00940000156926.d
Asian bonytongue	MODERN SPECIES	2	anxa2a (ENSSFOG00015021167)	FOXB1 (ENSSFOG00015027306)	gtf2a2 (ENSSFOG00015027557)	OTUD7A (ENSSFOG00015021217)	klf13 (ENSSFOG00015025274)	ENSSFOG00015028508	trpm1b (ENSSFOG00015021267)	RAB8B (ENSSFOG00015033005) #28	DNAJA4 (ENSSFOG00015021324)	ACSBG1 (ENSSFOG00015021373)	idh3a (ENSSFOG00015021399)	lrrc61 (ENSSFOG00015021415)	CIB2 (ENSSFOG00015021440)	ENSSFOG00015021456	TBC1D2B (ENSSFOG00015021474)	ENSSFOG00015021507 ##22	HERC1 (ENSSFOG00015021579) #23	ENSSFOG00015030343	usp3 (ENSSFOG00015021659) #25	CA12 (ENSSFOG00015021689) #26	aph1b (ENSSFOG00015021708) #27	islr2 (ENSSFOG00015021787)	stra6 (ENSSFOG00015021736)	NR2E3 (ENSSFOG00015021798)	arih1 (ENSSFOG00015021813)	ENSSFOG00015021832	hacd3 (ENSSFOG00015021847)	ints14 (ENSSFOG00015021873)	SLC24A1 (ENSSFOG00015021891)	dennd4a (ENSSFOG00015021905)	far1 (ENSSFOG00015021951)
P. kingsleyae	MODERN SPECIES	10	anxa2a (ENSPKIG00000001223)	ENSPKIG00000001201	FOXB1 (ENSPKIG00000001188)	gtf2a2 (ENSPKIG00000001173)	OTUD7A (ENSPKIG00000001114)	klf13 (ENSPKIG00000001074)	trpm1b (ENSPKIG00000001028)	RAB8B (ENSPKIG00000000981) #28	DNAJA4 (ENSPKIG00000000969)	ACSBG1 (ENSPKIG00000000948)	idh3a (ENSPKIG00000000910)	lrrc61 (ENSPKIG00000000874)	CIB2 (ENSPKIG00000000834)	SH2D7 (ENSPKIG00000000795)	TBC1D2B (ENSPKIG00000000735)	ENSPKIG00000000674 ##22	HERC1 (ENSPKIG00000000569) #23	ENSPKIG00000000525	usp3 (ENSPKIG00000000507) #25	ENSPKIG00000000496	CA12 (ENSPKIG00000000437) #26	aph1b (ENSPKIG00000000382) #27	stra6 (ENSPKIG00000000355)	NR2E3 (ENSPKIG00000000334)	ARIH1 (ENSPKIG00000024243)	hacd3 (ENSPKIG00000024214)	ints14 (ENSPKIG00000024198)	SLC24A1 (ENSPKIG00000024187)	dennd4a (ENSPKIG00000024083)	far1 (ENSPKIG00000024015)	PPFIBP2 (ENSPKIG00000023879)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b ##22
Yarkand deer	MODERN SPECIES	105																ENSCHYG00000008872 ##22
Actinopterygii	ANCESTRAL SPECIES	128					ENSGT00950000182891.a.a.b.b	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b #23	ENSGT00940000164936	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967	ENSGT00940000153246.a.a.a	ENSGT00390000017366	ENSGT00940000158575
Neopterygii	ANCESTRAL SPECIES	30	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b #23	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967	ENSGT00940000153246.a.a.a	ENSGT00390000017366	ENSGT00940000158575
Osteoglossocephalai	ANCESTRAL SPECIES		ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b #23	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967	ENSGT00940000153246.a.a.a	ENSGT00390000017366	ENSGT00940000158575
Clupeocephala	ANCESTRAL SPECIES	386							ENSGT00940000154257.b	ENSGT00940000160522.c.b	ENSGT00390000014572	ENSGT00940000155024.a.b	ENSGT00940000155363.v.a #28	ENSGT00950000182989.A.a	ENSGT00940000175407	ENSGT00940000157327.o.b	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.a.a #23
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00950000182891.a.a.a	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155024.a.b.c.b	ENSGT00940000155363.v.a #28	ENSGT00950000182989.A.a	ENSGT00940000175407	ENSGT00940000157327.o.b	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619	ENSGT00940000163168	ENSGT00940000173891	ENSGT01010000222762.b	ENSGT00940000165582	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619	ENSGT00940000163168	ENSGT00940000173891	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C
Cod	MODERN SPECIES	5	ENSGMOG00000010812	ENSGMOG00000018344	ENSGMOG00000033701	ENSGMOG00000005408	ENSGMOG00000014850	ENSGMOG00000014867	ENSGMOG00000014900	ENSGMOG00000014942	ENSGMOG00000014993	crybgx (ENSGMOG00000015010)	ENSGMOG00000015022	dis3l (ENSGMOG00000003012)	ENSGMOG00000011768	ENSGMOG00000004096	ENSGMOG00000004071	ENSGMOG00000004049 ##22	ENSGMOG00000035369 #23	ENSGMOG00000035938	ENSGMOG00000001565	cdh15 (ENSGMOG00000001534)	ACSF3 (ENSGMOG00000001508)	CBFA2T3 (ENSGMOG00000001484)	PABPN1L (ENSGMOG00000001475)	trappc2l (ENSGMOG00000001406)	galns (ENSGMOG00000001371)	cmtm3 (ENSGMOG00000001358)	dync1li2 (ENSGMOG00000001336)	nae1 (ENSGMOG00000001307)	ENSGMOG00000033842	ca7 (ENSGMOG00000001295)	ENSGMOG00000001257
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235403	ENSGT00940000155619.c.a	ENSGT01030000235163	ENSGT00940000155619.d	ENSGT00940000163168	ENSGT00940000155619.c.b	ENSGT00940000173891	ENSGT00940000169460	ENSGT00940000159282 #26
Pinecone sodierfish	MODERN SPECIES	17	ENSMMDG00005006867	ENSMMDG00005006877	KIFC3 (ENSMMDG00005006899)	katnb1 (ENSMMDG00005007639)	cog8 (ENSMMDG00005007766)	NOB1 (ENSMMDG00005007768)	WDR59 (ENSMMDG00005007780)	tnni1b (ENSMMDG00005008667)	rab8b (ENSMMDG00005008680) #28	idh3a (ENSMMDG00005008694)	CIB2 (ENSMMDG00005009525)	ENSMMDG00005009526	hsd11b2 (ENSMMDG00005009527)	zdhhc1 (ENSMMDG00005009529)	ENSMMDG00005009531	dapk2a (ENSMMDG00005009532) ##22	HERC1 (ENSMMDG00005009551) #23	ENSMMDG00005009777	tspan18a (ENSMMDG00005009782)	ENSMMDG00005009786	ENSMMDG00005009793	zgc:194679 (ENSMMDG00005009794)	KCNG4 (ENSMMDG00005009798)	rpl12 (ENSMMDG00005009806)	pole3 (ENSMMDG00005009828)	kmt5b (ENSMMDG00005009834)	cd82a (ENSMMDG00005009840)	ENSMMDG00005009843	furina (ENSMMDG00005009916)	fes (ENSMMDG00005013844)	rhcgl1 (ENSMMDG00005013963)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366
Tiger tail seahorse	MODERN SPECIES	136	ENSHCOG00000005320	ENSHCOG00000000154	ENSHCOG00000005335	ppfia1 (ENSHCOG00000005363)	arfgap2 (ENSHCOG00000005405)	pex16 (ENSHCOG00000005418)	cars1 (ENSHCOG00000005493)	crybgx (ENSHCOG00000005524)	lctla (ENSHCOG00000005554)	tipin (ENSHCOG00000005560)	dis3l (ENSHCOG00000000183)	ENSHCOG00000005626	ENSHCOG00000005631	rab11a (ENSHCOG00000005652)	ENSHCOG00000005661	dapk2a (ENSHCOG00000005672) ##22	HERC1 (ENSHCOG00000005794) #23	tspan18a (ENSHCOG00000005835)	cd82a (ENSHCOG00000005923)	ccnb2 (ENSHCOG00000005943)	nxpe3 (ENSHCOG00000005947)	kmt5b (ENSHCOG00000005960)	pole3 (ENSHCOG00000005972)	rpl12 (ENSHCOG00000005990)	ENSHCOG00000005994	ENSHCOG00000006007	GABARAPL2 (ENSHCOG00000006062)	ENSHCOG00000006213	ENSHCOG00000006226	zgc:194679 (ENSHCOG00000006231)	MATCAP1 (ENSHCOG00000006239)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000178634
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000178634
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.f.a	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000155010.a	ENSGT00940000161887	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000178634	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a
Fugu	MODERN SPECIES	4	CTTN (ENSTRUG00000007235)	ppfia1 (ENSTRUG00000007699)	ENSTRUG00000025667	ENSTRUG00000026832	ENSTRUG00000008059	arfgap2 (ENSTRUG00000008070)	pex16 (ENSTRUG00000008505)	cars1 (ENSTRUG00000008686)	ccnb2 (ENSTRUG00000021973)	crybgx (ENSTRUG00000009403)	lctla (ENSTRUG00000009494)	tipin (ENSTRUG00000024319)	ENSTRUG00000009956	rab11a (ENSTRUG00000020792)	ENSTRUG00000024673	dapk2a (ENSTRUG00000010609) ##22	HERC1 (ENSTRUG00000029848) #23	ENSTRUG00000029860	tspan18a (ENSTRUG00000020577)	ENSTRUG00000029380	cd82a (ENSTRUG00000011027)	ube2g1a (ENSTRUG00000011134)	ccnb2 (ENSTRUG00000011147)	kmt5b (ENSTRUG00000022914)	pole3 (ENSTRUG00000032058)	rpl12 (ENSTRUG00000021921)	ENSTRUG00000011767	GABARAPL2 (ENSTRUG00000022747)	ENSTRUG00000011870	ENSTRUG00000021071	zgc:194679 (ENSTRUG00000028025)
Tetraodon	MODERN SPECIES	20	CTTN (ENSTNIG00000004752)	ppfia1 (ENSTNIG00000004753)	ENSTNIG00000004754	ENSTNIG00000004755	ENSTNIG00000004756	arfgap2 (ENSTNIG00000004757)	pex16 (ENSTNIG00000004758)	cars1 (ENSTNIG00000004759)	ccnb2 (ENSTNIG00000004760)	crybgx (ENSTNIG00000004761)	lctla (ENSTNIG00000004762)	tipin (ENSTNIG00000004763)	dis3l (ENSTNIG00000004764)	ENSTNIG00000004765	ENSTNIG00000003434	dapk2a (ENSTNIG00000003435) ##22	HERC1 (ENSTNIG00000003436) #23	tspan18a (ENSTNIG00000003437)	cd82a (ENSTNIG00000003438)	ube2g1a (ENSTNIG00000015331)	cd82a (ENSTNIG00000003439)	ube2g1a (ENSTNIG00000000903)	kmt5b (ENSTNIG00000003440)	pole3 (ENSTNIG00000003441)	rpl12 (ENSTNIG00000003442)	ENSTNIG00000003443	NQO2 (ENSTNIG00000002280)	ENSTNIG00000002960	ENSTNIG00000002961	zgc:194679 (ENSTNIG00000002962)	MATCAP1 (ENSTNIG00000002963)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000155333.A.a.g.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a
Ballan wrasse	MODERN SPECIES	784													ENSLBEG00000026833	rab11a (ENSLBEG00000026857)	ENSLBEG00000026871	dapk2a (ENSLBEG00000026900) ##22	ENSLBEG00000026956 #23	ENSLBEG00000026963	ENSLBEG00000026977	ENSLBEG00000026987	ENSLBEG00000026997
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000155333.A.a.g.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000163723.A.f.b	ENSGT00940000166122	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a
Cottioidei	ANCESTRAL SPECIES	72	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000166122	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405.v	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22
Stickleback	MODERN SPECIES	1	ENSGACG00000017354	TNNT3 (ENSGACG00000017352)	myod1 (ENSGACG00000017350)	OTOG (ENSGACG00000017343)	aph1b (ENSGACG00000017339) #27	tnni2b.1 (ENSGACG00000017338)	GLG1 (ENSGACG00000017337)	pacsin3 (ENSGACG00000017333)	ENSGACG00000017331	gch1 (ENSGACG00000017325)	wdhd1 (ENSGACG00000017321)	socs4 (ENSGACG00000017319)	dis3l (ENSGACG00000017315)	ENSGACG00000017313	ENSGACG00000017310	dapk2a (ENSGACG00000017307) ##22	ENSGACG00000017302	ENSGACG00000017297 #23	ENSGACG00000017296	crybgx (ENSGACG00000017294)	ccnb2 (ENSGACG00000017292)	cars1 (ENSGACG00000017279)	pex16 (ENSGACG00000017273)	arfgap2 (ENSGACG00000017267)	ENSGACG00000017266	ENSGACG00000017264	ENSGACG00000017261	ENSGACG00000017259	ENSGACG00000017256	ENSGACG00000017254	ctsd (ENSGACG00000017247)
Lumpfish	MODERN SPECIES	18	ENSCLMG00005009443	arfgap2 (ENSCLMG00005009444)	pex16 (ENSCLMG00005009449)	cars1 (ENSCLMG00005009487)	ENSCLMG00005012023	crybgx (ENSCLMG00005012024)	lctla (ENSCLMG00005012029)	ENSCLMG00005012144	tipin (ENSCLMG00005012145)	dis3l (ENSCLMG00005012152)	ENSCLMG00005012638	ENSCLMG00005012640	ENSCLMG00005012658	ENSCLMG00005012659	rab11a (ENSCLMG00005012660)	ENSCLMG00005012674 ##22	ENSCLMG00005012717	ENSCLMG00005012720	large2 (ENSCLMG00005012736)	ENSCLMG00005014425	BRSK2 (ENSCLMG00005014427)	gpn1 (ENSCLMG00005014433)	STMN4 (ENSCLMG00005015043)	il17a/f1 (ENSCLMG00005015045)	ENSCLMG00005015047	ENSCLMG00005015048	ENSCLMG00005015108	ENSCLMG00005015111	ctrb.3 (ENSCLMG00005015112)	ENSCLMG00005015114	ctrb.2 (ENSCLMG00005015115)
Perciformes_a	ANCESTRAL SPECIES	55	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.a.d	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d
Pike perch	MODERN SPECIES	42	SHANK2 (ENSSLUG00000020771)	CTTN (ENSSLUG00000020629)	ppfia1 (ENSSLUG00000014829)	ENSSLUG00000014557	arfgap2 (ENSSLUG00000014518)	pex16 (ENSSLUG00000014500)	cars1 (ENSSLUG00000009586)	ccnb2 (ENSSLUG00000009411)	crybgx (ENSSLUG00000009402)	lctla (ENSSLUG00000009393)	tipin (ENSSLUG00000009385)	dis3l (ENSSLUG00000009340)	ENSSLUG00000009292	rab11a (ENSSLUG00000009263)	ENSSLUG00000009257	dapk2a (ENSSLUG00000009254) ##22	ENSSLUG00000009230	TSPAN18 (ENSSLUG00000009223)	cd82a (ENSSLUG00000009215)	ccnb2 (ENSSLUG00000009207)	kmt5b (ENSSLUG00000009202)	kmt5b (ENSSLUG00000009197)	pole3 (ENSSLUG00000009195)	rpl12 (ENSSLUG00000009043)	ENSSLUG00000009020	ENSSLUG00000009015	GABARAPL2 (ENSSLUG00000009005)	nqo1 (ENSSLUG00000008999)	ENSSLUG00000008994	zgc:194679 (ENSSLUG00000008992)	MATCAP1 (ENSSLUG00000008988)
Channel bull blenny	MODERN SPECIES	17	TDP1 (ENSCGOG00000001479)	hmbox1a (ENSCGOG00000001525)	KIF13B (ENSCGOG00000001573)	ENSCGOG00000003070	arfgap2 (ENSCGOG00000003096)	pex16 (ENSCGOG00000003590)	cars1 (ENSCGOG00000003638)	ccnb2 (ENSCGOG00000005301)	crybgx (ENSCGOG00000005309)	lctla (ENSCGOG00000005318)	tipin (ENSCGOG00000005347)	dis3l (ENSCGOG00000005362)	ENSCGOG00000005992	rab11a (ENSCGOG00000006701)	ENSCGOG00000006769	dapk2a (ENSCGOG00000006770) ##22	HERC1 (ENSCGOG00000006815) #23	ENSCGOG00000007543	tspan18a (ENSCGOG00000007545)	cd82a (ENSCGOG00000007609)	ccnb2 (ENSCGOG00000007613)	kmt5b (ENSCGOG00000007614)	ccnb2 (ENSCGOG00000007619)	kmt5b (ENSCGOG00000007635)	pole3 (ENSCGOG00000007661)	rpl12 (ENSCGOG00000007669)	ENSCGOG00000007763	ENSCGOG00000007766	GABARAPL2 (ENSCGOG00000007767)	ENSCGOG00000007776	ENSCGOG00000007860
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b.h	ENSGT00940000163723.A.f.a.d	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.g.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010019716	ENSSAUG00010019710	arfgap2 (ENSSAUG00010019616)	pex16 (ENSSAUG00010019614)	cars1 (ENSSAUG00010019318)	ccnb2 (ENSSAUG00010019305)	ENSSAUG00010019302	crybgx (ENSSAUG00010019299)	lctla (ENSSAUG00010019278)	tipin (ENSSAUG00010019272)	dis3l (ENSSAUG00010019226)	ENSSAUG00010019213	ENSSAUG00010019106	rab11a (ENSSAUG00010019089)	ENSSAUG00010019086	dapk2a (ENSSAUG00010018803) ##22	HERC1 (ENSSAUG00010018739) #23	tspan18a (ENSSAUG00010018721)	cd82a (ENSSAUG00010018700)	ccnb2 (ENSSAUG00010018695)	kmt5b (ENSSAUG00010018693)	pole3 (ENSSAUG00010018691)	rpl12 (ENSSAUG00010018685)	ENSSAUG00010018681	ENSSAUG00010018679	ENSSAUG00010018675	GABARAPL2 (ENSSAUG00010018669)	NQO2 (ENSSAUG00010018647)	ENSSAUG00010018644	zgc:194679 (ENSSAUG00010018643)	zgc:194679 (ENSSAUG00010018642)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000153561.b.a.a.b	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.a.c	ENSGT00940000163723.A.f.a.d	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.g.a	ENSGT00940000154914	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005008054	ENSLCRG00005008052	ENSLCRG00005008051	MCTP1 (ENSLCRG00005007123)	SEPTIN5 (ENSLCRG00005006734)	cldn5b (ENSLCRG00005006728)	acads (ENSLCRG00005006677)	crybb1 (ENSLCRG00005006674)	cryba4 (ENSLCRG00005006673)	grk3 (ENSLCRG00005006651)	SEZ6L (ENSLCRG00005005778)	ENSLCRG00005005760	SLC4A5 (ENSLCRG00005003912)	tacr1b (ENSLCRG00005003894)	rab11a (ENSLCRG00005003890)	dapk2a (ENSLCRG00005003886) ##22	ENSLCRG00005003084	tspan18a (ENSLCRG00005003082)	cd82a (ENSLCRG00005003078)	ccnb2 (ENSLCRG00005003075)	kmt5b (ENSLCRG00005003072)	pole3 (ENSLCRG00005003071)	rpl12 (ENSLCRG00005003051)	ENSLCRG00005003048	ENSLCRG00005003045	ENSLCRG00005003042	ENSLCRG00005003039	nqo1 (ENSLCRG00005003029)	OTOG (ENSLCRG00005003017)	aph1b (ENSLCRG00005003014) #27	aph1b (ENSLCRG00005003009) #27
European seabass	MODERN SPECIES	18	PPFIA1 (ENSDLAG00005010588)	ENSDLAG00005003584	ENSDLAG00005034599	ENSDLAG00005003125	ENSDLAG00005010448	ENSDLAG00005010356	ENSDLAG00005010168	ENSDLAG00005009095	ENSDLAG00005009046	crybgx (ENSDLAG00005009036)	lctla (ENSDLAG00005008857)	tipin (ENSDLAG00005008836)	dis3l (ENSDLAG00005008734)	ENSDLAG00005023499	RAB11A (ENSDLAG00005030246)	ENSDLAG00005030332 ##22	ENSDLAG00005032472	ENSDLAG00005022632 #23	ENSDLAG00005031844	ENSDLAG00005022575	ENSDLAG00005022573	ENSDLAG00005022562	ENSDLAG00005022538	ENSDLAG00005027740	ENSDLAG00005022516	ENSDLAG00005022504	ENSDLAG00005033959	ENSDLAG00005030498	ENSDLAG00005022501	ENSDLAG00005022437	zgc:194679 (ENSDLAG00005033847)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000016868	ENSMAMG00000016896	TNNI2 (ENSMAMG00000027039)	ENSMAMG00000016992	ENSMAMG00000017001	ENSMAMG00000017043	ENSMAMG00000017073	ENSMAMG00000017121	crybgx (ENSMAMG00000017150)	lctla (ENSMAMG00000017174)	tipin (ENSMAMG00000017203)	dis3l (ENSMAMG00000017229)	ENSMAMG00000017293	RAB11A (ENSMAMG00000027414)	ENSMAMG00000017337	ENSMAMG00000025603 ##22	ENSMAMG00000017358 #23	ENSMAMG00000026774	ENSMAMG00000017520	ENSMAMG00000024446	ENSMAMG00000017556	ENSMAMG00000027922	ENSMAMG00000024511	ENSMAMG00000025257	ENSMAMG00000017664	ENSMAMG00000025929	ENSMAMG00000028301	ENSMAMG00000017751	ENSMAMG00000017831	ENSMAMG00000017839	ENSMAMG00000017844
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000161887	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c
Climbing perch	MODERN SPECIES	16	ENSATEG00000022101	ENSATEG00000022132	ENSATEG00000022204	ENSATEG00000022233	ENSATEG00000022248	ENSATEG00000022262	ENSATEG00000022291	ENSATEG00000022355	crybgx (ENSATEG00000022426)	lctla (ENSATEG00000022437)	tipin (ENSATEG00000022453)	dis3l (ENSATEG00000022464)	ENSATEG00000022505	RAB11A (ENSATEG00000023730)	ENSATEG00000022546	ENSATEG00000022559 ##22	ENSATEG00000022577 #23	ENSATEG00000022648	ENSATEG00000022662	ENSATEG00000022675	ENSATEG00000022688	ENSATEG00000026022	ENSATEG00000022706	ENSATEG00000022724	ENSATEG00000022729	ENSATEG00000022743	ENSATEG00000022749	ENSATEG00000025456	ENSATEG00000022791	ENSATEG00000022803	ENSATEG00000022807
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c
Pleuronectoidei	ANCESTRAL SPECIES	52	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000155333.A.a.g.b	ENSGT00940000154914	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000158481.d
Turbot	MODERN SPECIES	17	ENSSMAG00000004356	ENSSMAG00000004346	ENSSMAG00000004326	ENSSMAG00000004313	ENSSMAG00000004282	ENSSMAG00000037704	ENSSMAG00000004238	ENSSMAG00000003908	crybgx (ENSSMAG00000004208)	lctla (ENSSMAG00000004176)	tipin (ENSSMAG00000004166)	dis3l (ENSSMAG00000004147)	ENSSMAG00000035419	ENSSMAG00000030576	RAB11A (ENSSMAG00000033097)	ENSSMAG00000031269 ##22	ENSSMAG00000003980 #23	ENSSMAG00000030745	ENSSMAG00000033814	ENSSMAG00000003951	ENSSMAG00000004225	ENSSMAG00000003803	ENSSMAG00000035843	ENSSMAG00000003662	ENSSMAG00000003550	ENSSMAG00000003524	ENSSMAG00000026740	PPFIA1 (ENSSMAG00000026619)	ENSSMAG00000030149	SHANK2 (ENSSMAG00000027423)	ENSSMAG00000005764
Tongue sole	MODERN SPECIES	15	SLC6A2 (ENSCSEG00000007621)	lpcat2 (ENSCSEG00000007587)	mmp2 (ENSCSEG00000007565)	irx6a (ENSCSEG00000007538)	irx5a (ENSCSEG00000007529)	ENSCSEG00000007516	CDH8 (ENSCSEG00000007497)	ENSCSEG00000007483	phospho2 (ENSCSEG00000007475)	SYAP1 (ENSCSEG00000007461)	adgrg1 (ENSCSEG00000007445)	slc7a6 (ENSCSEG00000007431)	slc7a6os (ENSCSEG00000007425)	ENSCSEG00000007393	rab11a (ENSCSEG00000007383)	dapk2a (ENSCSEG00000007374) ##22	ENSCSEG00000007366	ENSCSEG00000007355	ENSCSEG00000007348	ENSCSEG00000007344 #23	ENSCSEG00000007329 #23	cd82a (ENSCSEG00000007299)	ENSCSEG00000007291	ENSCSEG00000007284	mtch2 (ENSCSEG00000007131)	znf414 (ENSCSEG00000007111)	ankdd1a (ENSCSEG00000007096) #8	ENSCSEG00000007084 #9	fgf19 (ENSCSEG00000007061)	fgf4 (ENSCSEG00000007038)	fgf3 (ENSCSEG00000007028)
Carangaria_A	ANCESTRAL SPECIES	19									ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c
Seriola	ANCESTRAL SPECIES	30	ENSGT00940000158441	ENSGT00510000046704.b.b	ENSGT00940000157324	ENSGT00390000011190	ENSGT00940000156756	ENSGT00970000193372.a.a.tc.a	ENSGT00950000183152.A	ENSGT00390000012913.b	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT01100000263512.b.b.a.i	ENSGT00940000159726	ENSGT00390000008044	ENSGT00390000011024	ENSGT00390000016316	ENSGT00940000158077	ENSGT00940000173933.b	ENSGT00950000182963.b.a.d	ENSGT00940000159407.q	ENSGT00940000157355.c	ENSGT00940000161181.c	ENSGT00940000159830	ENSGT00940000174889	ENSGT00950000183118.A.c.a	ENSGT00390000006347.a
Greater amberjack	MODERN SPECIES	3	FSD2 (ENSSDUG00000002921)	WHAMM (ENSSDUG00000002890)	homer2 (ENSSDUG00000002857)	RAMAC (ENSSDUG00000002843)	BTBD1 (ENSSDUG00000002814)	ap1s2 (ENSSDUG00000002801)	ZRSR2 (ENSSDUG00000002784)	TM6SF1 (ENSSDUG00000002771)	crybgx (ENSSDUG00000002750)	lctla (ENSSDUG00000002714)	tipin (ENSSDUG00000002701)	dis3l (ENSSDUG00000002630)	ENSSDUG00000002599	rab11a (ENSSDUG00000002580)	ENSSDUG00000002555	dapk2a (ENSSDUG00000002533) ##22	GRPR (ENSSDUG00000002486)	vegfd (ENSSDUG00000002443)	pir (ENSSDUG00000002403)	zgc:113276 (ENSSDUG00000002364)	ENSSDUG00000002347	ace2 (ENSSDUG00000002311)	ENSSDUG00000002294	NHS (ENSSDUG00000002264)	SCML2 (ENSSDUG00000002252)	cdkl5 (ENSSDUG00000002201)	RS1 (ENSSDUG00000002148)	ppef1 (ENSSDUG00000002125)	ENSSDUG00000002113	PHKA2 (ENSSDUG00000001094)	cars1 (ENSSDUG00000000977)
Yellowtail amberjack	MODERN SPECIES	2798	WHAMM (ENSSLDG00000009986)	homer2 (ENSSLDG00000009970)	HOMER2 (ENSSLDG00000009944)	RAMAC (ENSSLDG00000009924)	BTBD1 (ENSSLDG00000009893)	ap1s2 (ENSSLDG00000009877)	ENSSLDG00000009759	TM6SF1 (ENSSLDG00000009722)	crybgx (ENSSLDG00000009695)	lctla (ENSSLDG00000009618)	tipin (ENSSLDG00000009591)	dis3l (ENSSLDG00000009525)	ENSSLDG00000009469	rab11a (ENSSLDG00000009438)	ENSSLDG00000009418	dapk2a (ENSSLDG00000009361) ##22	GRPR (ENSSLDG00000009300)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1079																dapk2a (ENSLCAG00010001530) ##22	ENSLCAG00010001523 #23
Barramundi perch	MODERN SPECIES	100	GABARAPL2 (ENSLCAG00010004310)	ENSLCAG00010004321	ENSLCAG00010004337	ENSLCAG00010004346	rpl12 (ENSLCAG00010004367)	pole3 (ENSLCAG00010004399)	kmt5b (ENSLCAG00010004407)	ccnb2 (ENSLCAG00010004421)	crybgx (ENSLCAG00010004435)	lctla (ENSLCAG00010004446)	tipin (ENSLCAG00010004459)	dis3l (ENSLCAG00010004501)	ENSLCAG00010004683	rab11a (ENSLCAG00010004697)	ENSLCAG00010004701	dapk2a (ENSLCAG00010004706) ##22	ENSLCAG00010004716	TSPAN18 (ENSLCAG00010004718)	cd82a (ENSLCAG00010004720)	ccnb2 (ENSLCAG00010004723)	cars1 (ENSLCAG00010004799)	pex16 (ENSLCAG00010005280)	arfgap2 (ENSLCAG00010005307)	celf1 (ENSLCAG00010005339)	mtfmt (ENSLCAG00010005345)	shcbp1 (ENSLCAG00010005362)	VPS13C (ENSLCAG00010005593)	ENSLCAG00010006746	galr1b (ENSLCAG00010006750)	trpm1a (ENSLCAG00010006810)	ENSLCAG00010007051
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00950000183172.C	ENSGT01030000234597.a.b.a.a	ENSGT00940000156618.c.b	ENSGT01030000234838	ENSGT00940000159860.f
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000158152.b	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22
Pomacentridae_A	ANCESTRAL SPECIES	66	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000158152.b	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22
Amphiprion	ANCESTRAL SPECIES	292										ENSGT00940000158745.o.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22
Orange clownfish	MODERN SPECIES		ENSAPEG00000000064	il17a/f1 (ENSAPEG00000000065)	STMN4 (ENSAPEG00000000066)	gpn1 (ENSAPEG00000000067)	ENSAPEG00000000068	ENSAPEG00000000069	egln3 (ENSAPEG00000000070)	tipin (ENSAPEG00000000071)	dis3l (ENSAPEG00000000072)	ENSAPEG00000000073	ENSAPEG00000000074	rab11a (ENSAPEG00000000075)	ENSAPEG00000000076	ENSAPEG00000000077	ENSAPEG00000000078	dapk2a (ENSAPEG00000000079) ##22	ENSAPEG00000000080 #23	ENSAPEG00000000081	ENSAPEG00000000082	ENSAPEG00000000083	ENSAPEG00000000084	ENSAPEG00000000085 #23	ENSAPEG00000000086 #23	ENSAPEG00000000087	ENSAPEG00000000088	taldo1 (ENSAPEG00000000089)	taldo1 (ENSAPEG00000000090)	tspan4a (ENSAPEG00000000091)	ddb1 (ENSAPEG00000000092)	ENSAPEG00000000093	TMEM138 (ENSAPEG00000000094)
Clown anemonefish	MODERN SPECIES	792											ENSAOCG00000002463	rab11a (ENSAOCG00000020106)	ENSAOCG00000020081	ENSAOCG00000001483	ENSAOCG00000020045	dapk2a (ENSAOCG00000020035) ##22	ENSAOCG00000019998 #23
Spiny chromis	MODERN SPECIES	2567																dapk2a (ENSAPOG00000005881) ##22	ENSAPOG00000005843 #23	ENSAPOG00000005819
Bicolor damselfish	MODERN SPECIES	1112										taldo1 (ENSSPAG00000019511)	tipin (ENSSPAG00000019500)	dis3l (ENSSPAG00000019455)	ENSSPAG00000019412	rab11a (ENSSPAG00000019393)	ENSSPAG00000019371	dapk2a (ENSSPAG00000019342) ##22	ENSSPAG00000019321 #23
Cichlidae	ANCESTRAL SPECIES	40	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386
Pseudocrenilabrinae	ANCESTRAL SPECIES	28	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.c	ENSGT00940000155333.A.a.d.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00920000150778	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00390000006876	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32	ENSGT00940000153561.b.a.a.b	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.c	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00920000150778	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00390000006876	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424
Haplochromini	ANCESTRAL SPECIES	34	ENSGT00940000153561.b.a.a.b	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.c	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00920000150778	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00390000006876	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424
Burton s mouthbrooder	MODERN SPECIES	774													ENSHBUG00000023021	rab11a (ENSHBUG00000023035)	ENSHBUG00000023101	dapk2a (ENSHBUG00000023341) ##22	HERC1 (ENSHBUG00000023749) #23	cd82a (ENSHBUG00000003471)	kmt5b (ENSHBUG00000003501)
Haplochromini_A	ANCESTRAL SPECIES	39	ENSGT00940000153561.b.a.a.b	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764.r	ENSGT00530000063106.B	ENSGT00940000155333.A.a.c	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00920000150778	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00940000161051.a.a.b.b.b.a.c	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00390000006876	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424
P. nyererei	MODERN SPECIES	419										tipin (ENSPNYG00000001987)	dis3l (ENSPNYG00000002066)	ENSPNYG00000002097	ENSPNYG00000002240	rab11a (ENSPNYG00000002252)	ENSPNYG00000002271	dapk2a (ENSPNYG00000002301) ##22	HERC1 (ENSPNYG00000002320) #23	cd82a (ENSPNYG00000002621)	kmt5b (ENSPNYG00000002728)	pole3 (ENSPNYG00000002742)	TMC3 (ENSPNYG00000002766)	STARD5 (ENSPNYG00000002841)	ENSPNYG00000002876	npsn (ENSPNYG00000002893)	ankdd1a (ENSPNYG00000002920) #8	ENSPNYG00000002952 #9	ENSPNYG00000002961	mesd (ENSPNYG00000002968)	CEMIP (ENSPNYG00000002991)	abhd17c (ENSPNYG00000003056)	arnt2 (ENSPNYG00000003068)
Haplochromini_B	ANCESTRAL SPECIES	77											ENSGT00390000005764.r	ENSGT00530000063106.B	ENSGT00940000155333.A.a.c	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00920000150778	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00940000161051.a.a.b.b.b.a.c	ENSGT00940000161051.a.a.b.b.b.a.d	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00390000006876	ENSGT00390000000993	ENSGT00940000153636.a
Zebra mbuna	MODERN SPECIES	1091	fgf19 (ENSMZEG00005017208)	zgc:153993 (ENSMZEG00005017204)	abhd17c (ENSMZEG00005017197)	ENSMZEG00005017192	CEMIP (ENSMZEG00005017171)	mesd (ENSMZEG00005017158)	ENSMZEG00005017154	ENSMZEG00005017139 #9	ankdd1a (ENSMZEG00005017129) #8	tipin (ENSMZEG00005017116)	dis3l (ENSMZEG00005017095)	ENSMZEG00005017084	ENSMZEG00005017073	rab11a (ENSMZEG00005017063)	ENSMZEG00005017054	dapk2a (ENSMZEG00005017043) ##22	ENSMZEG00005017035	ENSMZEG00005017030	HERC1 (ENSMZEG00005016974) #23	cd82a (ENSMZEG00005016958)	kmt5b (ENSMZEG00005016943)	pole3 (ENSMZEG00005016930)	ENSMZEG00005016921	ENSMZEG00005016917	STARD5 (ENSMZEG00005016903)	ENSMZEG00005016898	npsn (ENSMZEG00005016894)	lctla (ENSMZEG00005016870)	crybgx (ENSMZEG00005016862)	ccnb2 (ENSMZEG00005016859)	cars1 (ENSMZEG00005016834)
Eastern happy	MODERN SPECIES		SHANK2 (ENSACLG00000002556)	CTTN (ENSACLG00000002506)	ppfia1 (ENSACLG00000002291)	ENSACLG00000002271	arfgap2 (ENSACLG00000002202)	pex16 (ENSACLG00000002118)	cars1 (ENSACLG00000001993)	ccnb2 (ENSACLG00000001980)	crybgx (ENSACLG00000001945)	lctla (ENSACLG00000001883)	ENSACLG00000001865	ENSACLG00000001862	ENSACLG00000001812	rab11a (ENSACLG00000001775)	ENSACLG00000001756	dapk2a (ENSACLG00000001586) ##22	HERC1 (ENSACLG00000001328) #23	cd82a (ENSACLG00000001316)	kmt5b (ENSACLG00000001197)	pole3 (ENSACLG00000001171)	TMC3 (ENSACLG00000001076)	STARD5 (ENSACLG00000001028)	ENSACLG00000001020	ENSACLG00000001012	npsn (ENSACLG00000000590)	ankdd1a (ENSACLG00000000553) #8	ENSACLG00000000420 #9	ENSACLG00000000415	mesd (ENSACLG00000000378)	ENSACLG00000000373	CEMIP (ENSACLG00000000193)
Nile tilapia	MODERN SPECIES		ENSONIG00000007167	ENSONIG00000028501	A3GALT2 (ENSONIG00000030923)	lrp4 (ENSONIG00000007159)	ENSONIG00000040626	ENSONIG00000029700	NELL1 (ENSONIG00000007149)	ENSONIG00000032200	slc6a5 (ENSONIG00000007148)	prmt3 (ENSONIG00000007146)	htatip2 (ENSONIG00000007145)	ENSONIG00000035471	ENSONIG00000015074	rab11a (ENSONIG00000015072)	ENSONIG00000028146	dapk2a (ENSONIG00000015069) ##22	HERC1 (ENSONIG00000015060) #23	ENSONIG00000028743	cd82a (ENSONIG00000015057)	kmt5b (ENSONIG00000015056)	pole3 (ENSONIG00000033969)	TMC3 (ENSONIG00000015050)	STARD5 (ENSONIG00000015047)	ENSONIG00000015044	ENSONIG00000015038	ankdd1a (ENSONIG00000015036) #8	ENSONIG00000038449	ENSONIG00000037983	ENSONIG00000032648	asb7 (ENSONIG00000039807)	ENSONIG00000013810
Midas cichlid	MODERN SPECIES	844									ENSACIG00000003308	TMC3 (ENSACIG00000003243)	tipin (ENSACIG00000003205)	dis3l (ENSACIG00000003161)	ENSACIG00000003103	rab11a (ENSACIG00000003092)	ENSACIG00000003069	dapk2a (ENSACIG00000003048) ##22	HERC1 (ENSACIG00000002866) #23	tspan18a (ENSACIG00000002818)	cd82a (ENSACIG00000002769)	ccnb2 (ENSACIG00000002751)	kmt5b (ENSACIG00000002725)	pole3 (ENSACIG00000002711)	lctla (ENSACIG00000002686)	crybgx (ENSACIG00000002669)	cars1 (ENSACIG00000002614)	ENSACIG00000002605	pdcd7 (ENSACIG00000002556)	KBTBD13 (ENSACIG00000002547)	rasl12 (ENSACIG00000002516)	uqcrfs1 (ENSACIG00000002502)	vstm2b (ENSACIG00000002484)
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000234633.A.a.a	ENSGT00950000183172.C	ENSGT01030000234597.a.b.a.a	ENSGT00940000156618.c.b	ENSGT01030000234838	ENSGT00940000159860.f	ENSGT00940000157136.a
Oryzias	ANCESTRAL SPECIES	84				ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22
Oryzias_b	ANCESTRAL SPECIES	108														ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155333.A.a	ENSGT00530000063106.B	ENSGT00390000005764	ENSGT00940000157369.b	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b
Javanese ricefish	MODERN SPECIES	17	NR2E3 (ENSOJAG00000001358)	ppfia1 (ENSOJAG00000001530)	CTTN (ENSOJAG00000003344)	SHANK2 (ENSOJAG00000003489)	ENSOJAG00000003509	ENSOJAG00000003557	ENSOJAG00000003645	ENSOJAG00000003695	guca1g (ENSOJAG00000003824)	ENSOJAG00000003836	rassf7b (ENSOJAG00000003851)	BRSK2 (ENSOJAG00000004004)	ENSOJAG00000004444	rab11a (ENSOJAG00000004537)	ENSOJAG00000004573	dapk2a (ENSOJAG00000004619) ##22	ENSOJAG00000004737	dis3l (ENSOJAG00000005138)	tipin (ENSOJAG00000005185)	lctla (ENSOJAG00000005207)	ENSOJAG00000005332	crybgx (ENSOJAG00000005363)	cars1 (ENSOJAG00000005475)	pex16 (ENSOJAG00000007521)	arfgap2 (ENSOJAG00000007620)	ENSOJAG00000007826	ENSOJAG00000000082	ENSOJAG00000000092	aph1b (ENSOJAG00000000118) #27	GLG1 (ENSOJAG00000000386)	pacsin3 (ENSOJAG00000000649)
Indian medaka	MODERN SPECIES	433						c1qtnf4 (ENSOMEG00000017829)	ndufs3 (ENSOMEG00000017795)	ptpmt1 (ENSOMEG00000017744)	prc1b (ENSOMEG00000017708)	vps33b (ENSOMEG00000017633)	hddc3 (ENSOMEG00000017573)	mfap1 (ENSOMEG00000017526)	hypk (ENSOMEG00000017548)	rab11a (ENSOMEG00000017467)	ENSOMEG00000017446	dapk2a (ENSOMEG00000017417) ##22	ENSOMEG00000017328	ENSOMEG00000017014	dis3l (ENSOMEG00000016984)	tipin (ENSOMEG00000016911)	lctla (ENSOMEG00000016867)	crybgx (ENSOMEG00000016827)	cars1 (ENSOMEG00000016785)	pex16 (ENSOMEG00000016650)	arfgap2 (ENSOMEG00000016584)	ENSOMEG00000016513	ENSOMEG00000016452
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT01030000234633.A.a.a	ENSGT00950000183172.C	ENSGT01030000234597.a.b.a.a	ENSGT00940000156618.c.b	ENSGT01030000234838	ENSGT00940000159860.f
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000166122	ENSGT00940000163723.A.f.b.d	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000166375	ENSGT01030000234633.A.a.a	ENSGT00950000183172.C	ENSGT01030000234597.a.b.a.a	ENSGT00940000156618.c.b
NAME_4	ANCESTRAL SPECIES	189					ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000155907.b.b #23	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000159150	ENSGT00940000166375
Mummichog	MODERN SPECIES	2450	pinx1 (ENSFHEG00000019078)	sox7 (ENSFHEG00000019081)	ENSFHEG00000019340	FNDC4 (ENSFHEG00000019374)	ENSFHEG00000019380	ENSFHEG00000019388	znf513a (ENSFHEG00000019421)	snx17 (ENSFHEG00000000828)	atraid (ENSFHEG00000019507)	eif2b4 (ENSFHEG00000019524)	nme6 (ENSFHEG00000019568)	ENSFHEG00000019580	ENSFHEG00000019649	rab11a (ENSFHEG00000019668)	ENSFHEG00000019681	dapk2a (ENSFHEG00000019702) ##22	ENSFHEG00000019717	ENSFHEG00000019737	ENSFHEG00000019750	ENSFHEG00000019784	ENSFHEG00000019811 #23	ENSFHEG00000019825 #23	ENSFHEG00000019840 #23	TSPAN18 (ENSFHEG00000019916)	cd82a (ENSFHEG00000020049)	ccnb2 (ENSFHEG00000020062)	kmt5b (ENSFHEG00000020073)
Sheepshead minnow	MODERN SPECIES	226																dapk2a (ENSCVAG00000022652) ##22	ENSCVAG00000022665	ENSCVAG00000022679	ENSCVAG00000022696	ENSCVAG00000022703	ENSCVAG00000022723	ENSCVAG00000022749 #23	ENSCVAG00000022762 #23	TSPAN18 (ENSCVAG00000022839)	cd82a (ENSCVAG00000022849)	ccnb2 (ENSCVAG00000022861)	kmt5b (ENSCVAG00000022875)	pole3 (ENSCVAG00000022885)	rpl12 (ENSCVAG00000022902)	KCNG4 (ENSCVAG00000022911)	ENSCVAG00000022953
Poeciliinae	ANCESTRAL SPECIES	35	ENSGT00940000163723.A.f.b.d	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a.c	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000166375	ENSGT00940000159150	ENSGT00940000155010.a	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT01030000234633.A.a.a	ENSGT00950000183172.C
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000163723.A.f.b.d	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a.c	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000159150	ENSGT00940000155010.a	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT01030000234633.A.a.a	ENSGT00950000183172.C	ENSGT01030000234597.a.b.a.a
NAME_6	ANCESTRAL SPECIES	157	ENSGT00940000163723.A.f.b.d	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00940000174432	ENSGT00390000006347.a.c	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.a	ENSGT00940000154914	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428
Amazon molly	MODERN SPECIES	966													rab11a (ENSPFOG00000009284)	ENSPFOG00000022646	ENSPFOG00000009268	dapk2a (ENSPFOG00000009176) ##22	HERC1 (ENSPFOG00000007797) #23	ENSPFOG00000007736	ENSPFOG00000007728
Sailfin molly	MODERN SPECIES	2038														ENSPLAG00000014507	ENSPLAG00000014520	dapk2a (ENSPLAG00000014532) ##22	ENSPLAG00000014540 #23	ENSPLAG00000014548	ENSPLAG00000014555	ENSPLAG00000014570	ENSPLAG00000014598 #23	ENSPLAG00000014604 #23	ENSPLAG00000014660
Platyfish	MODERN SPECIES	18	SHANK2 (ENSXMAG00000013801)	ENSXMAG00000025723	ENSXMAG00000013779	guca1g (ENSXMAG00000013766)	ENSXMAG00000027162	ENSXMAG00000023882	crybgx (ENSXMAG00000013749)	lctla (ENSXMAG00000013735)	tipin (ENSXMAG00000022558)	dis3l (ENSXMAG00000013661)	ENSXMAG00000023497	ENSXMAG00000027597	ENSXMAG00000013593	rab11a (ENSXMAG00000023732)	ENSXMAG00000013562	dapk2a (ENSXMAG00000009295) ##22	ENSXMAG00000023242 #23	ENSXMAG00000026505	ENSXMAG00000020997	ENSXMAG00000028894	ENSXMAG00000025540	ENSXMAG00000030004 #23	ENSXMAG00000028636 #23	ENSXMAG00000023601	ENSXMAG00000021331	ENSXMAG00000026018	ENSXMAG00000022073	ENSXMAG00000022070	nqo1 (ENSXMAG00000023962)	GABARAPL2 (ENSXMAG00000013475)	KCNG4 (ENSXMAG00000013465)
Aplocheiloidei	ANCESTRAL SPECIES	349													ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22
Mangrove rivulus	MODERN SPECIES	435													ENSKMAG00000011932	rab11a (ENSKMAG00000011905)	ENSKMAG00000011873	ENSKMAG00000011860 ##22
Turquoise killifish	MODERN SPECIES	1616	zdhhc1 (ENSNFUG00015003785)	TPPP3 (ENSNFUG00015003778)	ENSNFUG00015003611	ctrb.3 (ENSNFUG00015003607)	OLA.3677 (ENSNFUG00015003606)	AGRP (ENSNFUG00015003602)	NQO1 (ENSNFUG00015003197)	GABARAPL2 (ENSNFUG00015003166)	ENSNFUG00015003149	RPL12 (ENSNFUG00015003124)	POLE3 (ENSNFUG00015003116)	kmt5b (ENSNFUG00015003099)	crybgx (ENSNFUG00015003091)	ENSNFUG00015002889	RAB11A (ENSNFUG00015002802)	dapk2a (ENSNFUG00015002784) ##22	ENSNFUG00015002663	CRY5 (ENSNFUG00015002611)	ENSNFUG00015002604	ENSNFUG00015002601	SEC11A (ENSNFUG00015002597)	ENSNFUG00015002590	ENSNFUG00015002587	TSPAN3B (ENSNFUG00015002579)	pstpip1b (ENSNFUG00015002570)	ISL2 (ENSNFUG00015002540)	TMEM266 (ENSNFUG00015002528)	FBXO22 (ENSNFUG00015002515)	DDX28 (ENSNFUG00015001670)	BRSK2 (ENSNFUG00015001517)	ABTB2 (ENSNFUG00015001166)
Protacanthopterygii	ANCESTRAL SPECIES	10				ENSGT00390000006883	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000155707	ENSGT00940000160380	ENSGT00940000155024.a.b.c.b	ENSGT00940000155363.v.a #28	ENSGT00950000182989.A.a	ENSGT00940000157327.o.b	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00390000017249.e	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000168688
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00950000183083.a.d.a.z.a.a	ENSGT00950000183083.a.d.a.y	ENSGT00940000154856.A.b.a	ENSGT00940000157387.l	ENSGT00940000154257.b.c	ENSGT00940000160522.c.b	ENSGT00390000014572	ENSGT00940000158999.l	ENSGT00940000164815.b	ENSGT00940000155024.a.b.c.b.a.a	ENSGT00940000155363.v.a #28	ENSGT00950000182989.A.a.a	ENSGT00950000182989.A.a.b	ENSGT00940000157327.o.b	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00390000017249.e	ENSGT00940000156431.u	ENSGT00390000006293.t	ENSGT00390000002381.b.c	ENSGT00940000156938.e	ENSGT00940000163421.a.d.a.a	ENSGT00940000159150.ab	ENSGT00940000155010.a	ENSGT01010000223078	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c.b
Salmoninae_a	ANCESTRAL SPECIES	177											ENSGT00940000155024.a.b.c.b.b	ENSGT00940000155363.v.a.a.a #28	ENSGT00950000182989.A.a.a	ENSGT00940000157327.o.b.c.a	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00390000017249.e	ENSGT00940000156431.u	ENSGT00390000006293.t.b	ENSGT00390000002381.b.d.b
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	221											ENSGT00940000155024.a.b.c.b.b	ENSGT00940000155363.v.a.a.a #28	ENSGT00950000182989.A.a.a	ENSGT00940000157327.o.b.c.a	ENSGT00940000160977.e.a.b	ENSGT00940000153424.a.a.c.a.b.c ##22
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000034180	ENSOMYG00000059272	ENSOMYG00000072221	ENSOMYG00000071032	ENSOMYG00000037466	ENSOMYG00000062581	gtf2a2 (ENSOMYG00000065240)	ENSOMYG00000058602	ENSOMYG00000060194	trpm1a (ENSOMYG00000022182)	rab8b (ENSOMYG00000054197) #28	IDH3A (ENSOMYG00000022101)	ENSOMYG00000054717	ENSOMYG00000063389	ENSOMYG00000038661 ##22	dapk2a (ENSOMYG00000065478) ##22	ENSOMYG00000057665	ENSOMYG00000067560	ENSOMYG00000075070 #23	ENSOMYG00000057070	ENSOMYG00000074364	ENSOMYG00000037444	ENSOMYG00000072222	ENSOMYG00000073398	ENSOMYG00000063620	ENSOMYG00000075107	ENSOMYG00000050793	ENSOMYG00000069105	ENSOMYG00000065845	zgc:194679 (ENSOMYG00000053254)	ENSOMYG00000051512
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000038139	ENSOMYG00000034180	ENSOMYG00000059272	ENSOMYG00000072221	ENSOMYG00000071032	ENSOMYG00000037466	ENSOMYG00000062581	gtf2a2 (ENSOMYG00000065240)	ENSOMYG00000058602	ENSOMYG00000060194	trpm1a (ENSOMYG00000022182)	rab8b (ENSOMYG00000054197) #28	IDH3A (ENSOMYG00000022101)	ENSOMYG00000054717	ENSOMYG00000063389	ENSOMYG00000038661 ##22	dapk2a (ENSOMYG00000065478) ##22	ENSOMYG00000057665	ENSOMYG00000067560	ENSOMYG00000075070 #23	ENSOMYG00000057070	ENSOMYG00000074364	ENSOMYG00000037444	ENSOMYG00000072222	ENSOMYG00000073398	ENSOMYG00000063620	ENSOMYG00000075107	ENSOMYG00000050793	ENSOMYG00000069105	ENSOMYG00000065845	zgc:194679 (ENSOMYG00000053254)
Oncorhynchus_a	ANCESTRAL SPECIES	324											ENSGT00940000155024.a.b.c.b.b	ENSGT00940000155363.v.a.a.a #28	ENSGT00950000182989.A.a.a	ENSGT00940000157327.o.b.c.a	ENSGT00940000160977.e.a.a.b	ENSGT00940000153424.a.a.c.a.b.c ##22
Coho salmon	MODERN SPECIES	32	ENSOKIG00005020162	ENSOKIG00005020169	FOXB1 (ENSOKIG00005020174)	FOXB1 (ENSOKIG00005020187)	gtf2a2 (ENSOKIG00005020198)	ENSOKIG00005020234	OTUD7A (ENSOKIG00005020255)	klf13 (ENSOKIG00005020282)	ENSOKIG00005020295	trpm1a (ENSOKIG00005020675)	ENSOKIG00005029254	rab8b (ENSOKIG00005029285) #28	IDH3A (ENSOKIG00005029373)	CIB2 (ENSOKIG00005029404)	ENSOKIG00005029413	dapk2a (ENSOKIG00005029454) ##22	ENSOKIG00005029510	ENSOKIG00005029735	ENSOKIG00005029750	ENSOKIG00005029770	ENSOKIG00005029782	VPS13C (ENSOKIG00005030266)	ENSOKIG00005038662	ENSOKIG00005038671	galr1b (ENSOKIG00005038673)	ENSOKIG00005038677	ENSOKIG00005038709	atp6v0d1 (ENSOKIG00005038724)	hsd11b2 (ENSOKIG00005038822)	ENSOKIG00005038846	ENSOKIG00005038855
Oncorhynchus	ANCESTRAL SPECIES	188										ENSGT00940000155024.a.b.c.b.a.a	ENSGT00940000155363.v.a.a.b #28	ENSGT00950000182989.A.a.b	ENSGT00940000157327.o.b.d	ENSGT00940000157327.o.b.c.b	ENSGT00940000160977.e.a.a.a	ENSGT00940000153424.a.a.c.a.b.d ##22
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000048516	ENSOMYG00000055941	ENSOMYG00000061126	ENSOMYG00000051108	ENSOMYG00000059310	ENSOMYG00000030677	ENSOMYG00000061510	ENSOMYG00000066449	ENSOMYG00000030563	ENSOMYG00000059969	trpm1a (ENSOMYG00000067467)	rab8b (ENSOMYG00000068216) #28	IDH3A (ENSOMYG00000076963)	ENSOMYG00000022157	ENSOMYG00000051272	dapk2a (ENSOMYG00000030794) ##22	ENSOMYG00000057409	ENSOMYG00000049245 #23	ENSOMYG00000069963	tspan18a (ENSOMYG00000051783)	ENSOMYG00000053944	ENSOMYG00000053868	tp53i11a (ENSOMYG00000063935)	ENSOMYG00000050770	ENSOMYG00000030174	ENSOMYG00000069550	ENSOMYG00000029441	zgc:194679 (ENSOMYG00000029489)	ENSOMYG00000029503	ENSOMYG00000024976	ENSOMYG00000027790
Oncorhynchus_a	ANCESTRAL SPECIES	682															ENSGT00940000160977.e.a.a.a	ENSGT00940000153424.a.a.c.a.b.d ##22
Coho salmon	MODERN SPECIES	1337											trpm1a (ENSOKIG00005043855)	rab8b (ENSOKIG00005048637) #28	idh3a (ENSOKIG00005048671)	CIB2 (ENSOKIG00005048758)	ENSOKIG00005048765	dapk2a (ENSOKIG00005048786) ##22
Salmo	ANCESTRAL SPECIES	255												ENSGT00940000155024.a.b.c.a.a	ENSGT00940000155363.v.a.a.a #28	ENSGT00950000182989.A.a.a	ENSGT00940000157327.o.b.c.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00940000157667.d.d	ENSGT00940000158481.d.j
River trout	DUPLICATION
River trout	MODERN SPECIES	3	ENSSTUG00000014890	ENSSTUG00000014891	ENSSTUG00000014903	galr1b (ENSSTUG00000014920)	ENSSTUG00000014938	ENSSTUG00000014940	VPS13C (ENSSTUG00000015065)	ENSSTUG00000018119	ENSSTUG00000018133	trpm1a (ENSSTUG00000018310)	rab8b (ENSSTUG00000025556) #28	ENSSTUG00000025586	idh3a (ENSSTUG00000025601)	CIB2 (ENSSTUG00000025828)	ENSSTUG00000025841	dapk2a (ENSSTUG00000025857) ##22	ENSSTUG00000025879 #23	ENSSTUG00000025886 #23	dapk2a (ENSSTUG00000025906) ##22	ENSSTUG00000025950	ENSSTUG00000025952 ##22	ENSSTUG00000025982	CIB2 (ENSSTUG00000026017)	idh3a (ENSSTUG00000026037)	ENSSTUG00000026401 #23	ENSSTUG00000026461 #23	ENSSTUG00000026508	tspan18a (ENSSTUG00000026513)	cd82a (ENSSTUG00000026523)	tp53i11a (ENSSTUG00000026534)	KMT5B (ENSSTUG00000026542)
River trout	MODERN SPECIES	3	ENSSTUG00000026557	hsbp1b (ENSSTUG00000026554)	ENSSTUG00000026548	KMT5B (ENSSTUG00000026542)	tp53i11a (ENSSTUG00000026534)	cd82a (ENSSTUG00000026523)	tspan18a (ENSSTUG00000026513)	ENSSTUG00000026508	ENSSTUG00000026461 #23	ENSSTUG00000026401 #23	idh3a (ENSSTUG00000026037)	CIB2 (ENSSTUG00000026017)	ENSSTUG00000025982	ENSSTUG00000025952 ##22	ENSSTUG00000025950	dapk2a (ENSSTUG00000025906) ##22	ENSSTUG00000025886 #23	ENSSTUG00000025879 #23	dapk2a (ENSSTUG00000025857) ##22	ENSSTUG00000025841	CIB2 (ENSSTUG00000025828)	idh3a (ENSSTUG00000025601)	ENSSTUG00000025586	rab8b (ENSSTUG00000025556) #28	trpm1a (ENSSTUG00000018310)	ENSSTUG00000018133	ENSSTUG00000018119	VPS13C (ENSSTUG00000015065)	ENSSTUG00000014940	ENSSTUG00000014938	galr1b (ENSSTUG00000014920)
Atlantic salmon	MODERN SPECIES	18	anx2a (ENSSSAG00000004991)	ENSSSAG00000096932	FOXB1 (ENSSSAG00000113065)	ENSSSAG00000104640	gtf2a2 (ENSSSAG00000015777)	ENSSSAG00000115886	ENSSSAG00000015583	ENSSSAG00000112080	ENSSSAG00000012627	ENSSSAG00000043704	rab8b (ENSSSAG00000109151) #28	ENSSSAG00000092608	ENSSSAG00000085122	ENSSSAG00000100545	ENSSSAG00000115735	ENSSSAG00000006347 ##22	ENSSSAG00000096217 #23	ENSSSAG00000106909	ENSSSAG00000009806	ENSSSAG00000105524	ENSSSAG00000091074	ENSSSAG00000082927	ENSSSAG00000010152	ENSSSAG00000011427	ENSSSAG00000011352	nqo1 (ENSSSAG00000101047)	ENSSSAG00000085508	ENSSSAG00000110983	GBRL2 (ENSSSAG00000010013)	ENSSSAG00000088400	ENSSSAG00000113380
Northern pike	MODERN SPECIES	1	VPS13C (ENSELUG00000017296)	ENSELUG00000027467	rorab (ENSELUG00000017121)	anxa2b (ENSELUG00000000639)	FOXB1 (ENSELUG00000017034)	gtf2a2 (ENSELUG00000017019)	OTUD7A (ENSELUG00000016992)	klf13 (ENSELUG00000016962)	trpm1a (ENSELUG00000016944)	rab8b (ENSELUG00000016862) #28	idh3a (ENSELUG00000016752)	CIB2 (ENSELUG00000016739)	ENSELUG00000032986	ENSELUG00000025922	ENSELUG00000016710	dapk2a (ENSELUG00000016620) ##22	HERC1 (ENSELUG00000016561) #23	ENSELUG00000016428	tspan18a (ENSELUG00000016416)	cd82a (ENSELUG00000016388)	tp53i11a (ENSELUG00000016358)	KMT5B (ENSELUG00000016341)	hsbp1b (ENSELUG00000016301)	ENSELUG00000016282	ENSELUG00000016278	zgc:194679 (ENSELUG00000016269)	ENSELUG00000016260	ENSELUG00000025489	zgc:194679 (ENSELUG00000001623)	nqo1 (ENSELUG00000016240)	GABARAPL2 (ENSELUG00000016235)
Otomorpha	ANCESTRAL SPECIES	418										ENSGT00940000161970.y.b	ENSGT00390000014572	ENSGT00940000155024.a.b	ENSGT00940000155363.v.a #28	ENSGT00940000157327.p	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428
Otophysi	ANCESTRAL SPECIES	110					ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00940000156346.c.a.d	ENSGT00940000172895	ENSGT00940000154954.nb.b	ENSGT00940000156932.a	ENSGT00940000153731.a.b.c.d	ENSGT00390000013049	ENSGT01030000234542.b.a.a.b.a.a.a.h #31	ENSGT00940000157327.p	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00390000002049.c.b #27	ENSGT00940000157764.e.a	ENSGT00940000153348.A	ENSGT00390000010260	ENSGT00970000197152	ENSGT00940000155883.a.b.a.b	ENSGT00390000002016	ENSGT00420000029943	ENSGT00390000002349	ENSGT01090000263306	ENSGT00390000004877	ENSGT00940000158111	ENSGT00940000161131.b.a.b	ENSGT00940000156501
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b.g ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b.g ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b.g ##22
Golden-line barbel	MODERN SPECIES	3358																ENSSGRG00000006941 ##22
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000172895	ENSGT00940000154954.nb.b	ENSGT00940000156932.a	ENSGT00940000153731.a.b.c.d	ENSGT00390000013049	ENSGT01030000234542.b.a.a.b.a.a.a.g.b #31	ENSGT00940000154699.a.a #33	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00940000154257.b	ENSGT00940000160522.d	ENSGT00390000014572	ENSGT00940000155024.a.b	ENSGT00940000155363.v.a #28	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b.h ##22	ENSGT00940000155907.b.b #23	ENSGT00390000002049.c.b #27	ENSGT00940000157764.e.a	ENSGT00940000153348.A	ENSGT00390000010260	ENSGT00970000197152	ENSGT00940000155883.a.b.a.b	ENSGT00390000002016	ENSGT00420000029943	ENSGT00390000002349	ENSGT00390000004877	ENSGT00940000158111	ENSGT00940000161131.b.a.b.e.b	ENSGT00940000156501	ENSGT00390000006585
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00940000154954.nb.b.g	ENSGT00940000154954.nb.b.h	ENSGT00990000205651.d	ENSGT00980000198958.a	ENSGT00940000156932.a.k	ENSGT00940000153731.a.b.c.d.a	ENSGT00390000013049.l	ENSGT01030000234542.b.a.a.b.a.a.a.g.b.a #31	ENSGT00940000154699.a.a.e #33	ENSGT00950000183083.a.d.a.b	ENSGT00940000157387.id.a	ENSGT00940000154257.b.f	ENSGT00940000155024.a.b.a	ENSGT00940000155363.v.a.l #28	ENSGT00940000160977.e.a.c	ENSGT00940000153424.a.a.c.a.b.h.a.a ##22	ENSGT00940000155907.b.a.a #23	ENSGT00390000002049.c.b.a #27	ENSGT00940000157764.e.a.c	ENSGT00940000153348.A.m	ENSGT00390000010260.d	ENSGT00970000197152.b	ENSGT00940000155883.a.b.a.b.g.a	ENSGT00390000002016.f	ENSGT00420000029943	ENSGT00390000002349.c	ENSGT00940000158111.l	ENSGT00940000161131.b.a.b.e.b.a	ENSGT00940000156501.b	ENSGT00390000006585.f	ENSGT00940000154065.a.p
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000154954.nb.b.h	ENSGT00990000205651.d	ENSGT00980000198958.a	ENSGT00940000156932.a.k	ENSGT00940000153731.a.b.c.d.a	ENSGT00390000013049.l	ENSGT01030000234542.b.a.a.b.a.a.a.g.b.a #31	ENSGT00940000154699.a.a.e #33	ENSGT00950000183083.a.d.a.b	ENSGT00940000157387.id.a	ENSGT00940000154257.b.f	ENSGT00940000154757.ub.a	ENSGT00940000155024.a.b.a	ENSGT00940000155363.v.a.l #28	ENSGT00940000160977.e.a.c	ENSGT00940000153424.a.a.c.a.b.h.a.a ##22	ENSGT00940000155907.b.a.a #23	ENSGT00390000002049.c.b.a #27	ENSGT00940000157764.e.a.c	ENSGT00940000153348.A.m	ENSGT00390000010260.c	ENSGT00970000197152.a	ENSGT00940000155883.a.b.a.b.g.b	ENSGT00940000155883.a.b.a.b.h	ENSGT00390000002016.f	ENSGT00420000029943.a	ENSGT00390000002349.c	ENSGT00940000158111.l	ENSGT00940000161131.b.a.b.e.b.a	ENSGT00940000156501.b	ENSGT00390000006585.f
Common carp reference	MODERN SPECIES		ENSCCRG00000004739	pstpip1b (ENSCCRG00000062424)	ENSCCRG00000067136	isl2b (ENSCCRG00000010239)	ENSCCRG00000010244	tpma (ENSCCRG00000010267) #31	tln2a (ENSCCRG00000010516) #33	ENSCCRG00000052326	rorab (ENSCCRG00000052767)	anxa2b (ENSCCRG00000052764)	ENSCCRG00000052763	gtf2a2 (ENSCCRG00000052761)	trpm1a (ENSCCRG00000051154)	rab8b (ENSCCRG00000049117) #28	ENSCCRG00000049089	dapk2a (ENSCCRG00000006186) ##22	ENSCCRG00000006224 #23	aph1b (ENSCCRG00000006060) #27	ENSCCRG00000006521	exosc6 (ENSCCRG00000054900)	tmppe (ENSCCRG00000082252)	gnao1b (ENSCCRG00000073930)	fbxl8 (ENSCCRG00000018423)	tradd (ENSCCRG00000006112)	ogfod1 (ENSCCRG00000018427)	vrk3 (ENSCCRG00000006136)	ENSCCRG00000031228	gfod2 (ENSCCRG00000020527)	cog4 (ENSCCRG00000004984)	thap11 (ENSCCRG00000063990)	nrn1lb (ENSCCRG00000067256)
Goldfish	MODERN SPECIES	23	ENSCARG00000014232	ENSCARG00000014217	pstpip1b (ENSCARG00000014206)	isl2b (ENSCARG00000014202)	ENSCARG00000014195	tpma (ENSCARG00000013993) #31	tln2a (ENSCARG00000009522) #33	rorab (ENSCARG00000007313)	anxa2b (ENSCARG00000007178)	ENSCARG00000007167	foxb1b (ENSCARG00000007164)	GTF2A2 (ENSCARG00000007148)	trpm1a (ENSCARG00000006745)	rab8b (ENSCARG00000006687) #28	ENSCARG00000006677	dapk2a (ENSCARG00000006624) ##22	HERC1 (ENSCARG00000006551) #23	aph1b (ENSCARG00000006525) #27	SLC38A8 (ENSCARG00000006491)	exosc6 (ENSCARG00000006484)	tmppe (ENSCARG00000006473)	mtbl (ENSCARG00000006464)	gnao1b (ENSCARG00000006379)	tradd (ENSCARG00000006351)	fbxl8 (ENSCARG00000006343)	ogfod1 (ENSCARG00000006211)	vrk3 (ENSCARG00000005858)	ENSCARG00000005826	gfod2 (ENSCARG00000005822)	thap11 (ENSCARG00000005818)	cog4 (ENSCARG00000005814)
Cyprininae	ANCESTRAL SPECIES	277		ENSGT00990000205651.c	ENSGT00940000156932.a.l	ENSGT00940000153731.a.b.c.d.b	ENSGT00390000013049.k	ENSGT01030000234542.b.a.a.b.a.a.a.g.b.b #31	ENSGT00940000154699.a.a.f #33	ENSGT00950000183083.a.d.a.a	ENSGT00940000157387.id.b	ENSGT00940000154257.b.e	ENSGT00940000160522.d	ENSGT00390000014572	ENSGT00940000155024.a.b.b	ENSGT00940000155363.v.a.k #28	ENSGT00940000160977.e.a.d	ENSGT00940000153424.a.a.c.a.b.h.a.b ##22	ENSGT00940000155907.b.a.b #23	ENSGT00390000002049.c.b.b #27	ENSGT00940000157764.e.a.d	ENSGT00940000153348.A.n	ENSGT00390000010260.c	ENSGT00970000197152.a	ENSGT00940000155883.a.b.a.b.g.b	ENSGT00390000002016.e	ENSGT00390000002349.d	ENSGT01090000263306	ENSGT00390000004877	ENSGT00940000158111.k	ENSGT00940000161131.b.a.b.e.b.b	ENSGT00940000156501.a	ENSGT00390000006585.e
Cyprininae_a	ANCESTRAL SPECIES	60	ENSGT00940000154470.b.d.d	ENSGT00940000154954.nb.b.g	ENSGT00990000205651.c	ENSGT00940000156932.a.l	ENSGT00940000153731.a.b.c.d.b	ENSGT00390000013049.k	ENSGT01030000234542.b.a.a.b.a.a.a.g.b.b #31	ENSGT00940000154699.a.a.f #33	ENSGT00950000183083.a.d.a.a	ENSGT00940000157387.id.b	ENSGT00940000154257.b.e	ENSGT00940000160522.d	ENSGT00390000014572	ENSGT00940000155024.a.b.b	ENSGT00940000155363.v.a.k #28	ENSGT00940000153424.a.a.c.a.b.h.a.b ##22	ENSGT00940000155907.b.a.b #23	ENSGT00390000002049.c.b.b #27	ENSGT00940000157764.e.a.d	ENSGT00940000153348.A.n	ENSGT00390000002016.e	ENSGT00420000029943.b	ENSGT00390000002349.d	ENSGT01090000263306	ENSGT00940000158111.k	ENSGT00940000161131.b.a.b.e.b.b	ENSGT00940000156501.a	ENSGT00390000006585.e	ENSGT00940000154065.a.o	ENSGT00530000063853.a.b.d.e	ENSGT00940000164014.a.b.m.a.b.a
Common carp reference	MODERN SPECIES	6	ENSCCRG00000040624	pstpip1b (ENSCCRG00000014408)	ENSCCRG00000055907	isl2b (ENSCCRG00000010242)	ENSCCRG00000052116	tpma (ENSCCRG00000052124) #31	tln2a (ENSCCRG00000052153) #33	ENSCCRG00000052777	rorab (ENSCCRG00000080281)	anxa2b (ENSCCRG00000070959)	foxb1b (ENSCCRG00000052766)	gtf2a2 (ENSCCRG00000067486)	trpm1a (ENSCCRG00000006164)	rab8b (ENSCCRG00000006170) #28	ENSCCRG00000006184	dapk2a (ENSCCRG00000049059) ##22	ENSCCRG00000000842 #23	aph1b (ENSCCRG00000063166) #27	ENSCCRG00000059602	exosc6 (ENSCCRG00000069888)	gnao1b (ENSCCRG00000006532)	tradd (ENSCCRG00000006559)	fbxl8 (ENSCCRG00000006564)	ogfod1 (ENSCCRG00000072290)	vrk3 (ENSCCRG00000041543)	ENSCCRG00000064912	gfod2 (ENSCCRG00000031225)	ENSCCRG00000061186	cog4 (ENSCCRG00000031049)	ENSCCRG00000031033	ENSCCRG00000082461
Goldfish	MODERN SPECIES	25	tspan3b (ENSCARG00000020995)	ENSCARG00000021006	pstpip1b (ENSCARG00000021016)	isl2b (ENSCARG00000021028)	ENSCARG00000021046	tpma (ENSCARG00000021134) #31	tln2a (ENSCARG00000022348) #33	VPS13C (ENSCARG00000023061)	rorab (ENSCARG00000029522)	anxa2b (ENSCARG00000029599)	ENSCARG00000029713	ENSCARG00000029717	trpm1a (ENSCARG00000029773)	rab8b (ENSCARG00000030749) #28	ENSCARG00000030770	dapk2a (ENSCARG00000030801) ##22	HERC1 (ENSCARG00000030854) #23	aph1b (ENSCARG00000030993) #27	SLC38A8 (ENSCARG00000031025)	tmppe (ENSCARG00000031044)	mtbl (ENSCARG00000031053)	gnao1b (ENSCARG00000031070)	tradd (ENSCARG00000031168)	ogfod1 (ENSCARG00000031201)	acd (ENSCARG00000031987)	vrk3 (ENSCARG00000032093)	ENSCARG00000032149	gfod2 (ENSCARG00000032154)	thap11 (ENSCARG00000032161)	cog4 (ENSCARG00000032199)	nrn1lb (ENSCARG00000033179)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b.h.b ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.a.b.h.b ##22
Golden-line barbel	MODERN SPECIES	75	ENSSGRG00000034156	pstpip1b (ENSSGRG00000034154)	isl2b (ENSSGRG00000034152)	ENSSGRG00000034151	tpma (ENSSGRG00000031898) #31	tln2a (ENSSGRG00000029073) #33	rorab (ENSSGRG00000028970)	anxa2b (ENSSGRG00000028229)	ENSSGRG00000028087	ENSSGRG00000028085	foxb1b (ENSSGRG00000028084)	gtf2a2 (ENSSGRG00000028059)	trpm1a (ENSSGRG00000023087)	rab8b (ENSSGRG00000022845) #28	ENSSGRG00000022844	dapk2a (ENSSGRG00000022817) ##22	aph1b (ENSSGRG00000022466) #27	ENSSGRG00000022465	exosc6 (ENSSGRG00000022464)	tmppe (ENSSGRG00000022463)	mtbl (ENSSGRG00000022462)	gnao1b (ENSSGRG00000022334)	ENSSGRG00000022332	tradd (ENSSGRG00000022331)	ENSSGRG00000022330	acd (ENSSGRG00000022316)	vrk3 (ENSSGRG00000022285)	ENSSGRG00000022281	gfod2 (ENSSGRG00000022280)	gfod2 (ENSSGRG00000022279)	cog4 (ENSSGRG00000022128)
Zebrafish	MODERN SPECIES	22	tspan3b (ENSDARG00000053559)	pstpip1b (ENSDARG00000053568)	isl2b (ENSDARG00000053499)	FBXO22 (ENSDARG00000053505)	tpma (ENSDARG00000033683) #31	tln2a (ENSDARG00000017901) #33	VPS13C (ENSDARG00000074465)	rorab (ENSDARG00000001910)	anxa2b (ENSDARG00000053625)	ENSDARG00000053630	foxb1b (ENSDARG00000053650)	gtf2a2 (ENSDARG00000053685)	trpm1a (ENSDARG00000011259)	rab8b (ENSDARG00000068628) #28	ENSDARG00000088167	dapk2a (ENSDARG00000061096) ##22	HERC1 (ENSDARG00000077901) #23	aph1b (ENSDARG00000005612) #27	SLC38A8 (ENSDARG00000054196)	exosc6 (ENSDARG00000036060)	tmppe (ENSDARG00000036059)	mtbl (ENSDARG00000102051)	gnao1b (ENSDARG00000036058)	tradd (ENSDARG00000036057)	fbxl8 (ENSDARG00000054222)	ogfod1 (ENSDARG00000036061)	acd (ENSDARG00000078055)	vrk3 (ENSDARG00000036056)	ENSDARG00000095007	gfod2 (ENSDARG00000061145)	thap11 (ENSDARG00000036055)
Characiphysae	ANCESTRAL SPECIES	97									ENSGT00940000154257.b	ENSGT00940000161970.y.b	ENSGT00390000014572	ENSGT00940000155024.a.b	ENSGT00940000155363.v.a #28	ENSGT00940000157327.p	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.a.a #23	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000155907.b.b #23	ENSGT00390000002049.c.b #27	ENSGT00940000157764.e.a	ENSGT00940000153348.A	ENSGT00390000010260	ENSGT00970000197152	ENSGT00940000155883.a.b.a.b	ENSGT00390000002016	ENSGT00420000029943	ENSGT00390000002349
Characiphysae_b	ANCESTRAL SPECIES	70	ENSGT00940000154470.b	ENSGT00940000154954.nb.b	ENSGT00940000156932.a	ENSGT00940000153731.a.b.c.d	ENSGT00390000013049	ENSGT01030000234542.b.a.a.b.a.a.a.g.a #31	ENSGT00940000154699.a.a #33	ENSGT00950000183083.a.d.a	ENSGT00940000154257.b	ENSGT00940000161970.y.b	ENSGT00390000014572	ENSGT00940000155024.a.b	ENSGT00940000155363.v.a #28	ENSGT00940000157327.p	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.a.a #23	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000155907.b.b #23	ENSGT00390000002049.c.b #27	ENSGT00940000157764.e.a	ENSGT00940000153348.A	ENSGT00390000010260	ENSGT00970000197152	ENSGT00940000155883.a.b.a.b	ENSGT00390000002016	ENSGT00420000029943	ENSGT00390000002349
Characoidei	ANCESTRAL SPECIES	201	ENSGT00940000154470.b	ENSGT00940000154954.nb.b	ENSGT00940000156932.a	ENSGT00940000153731.a.b.c.d	ENSGT00390000013049	ENSGT01030000234542.b.a.a.b.a.a.a.g.a #31	ENSGT00940000154699.a.a #33	ENSGT00950000183083.a.d.a	ENSGT00940000154257.b	ENSGT00940000161970.y.b	ENSGT00390000014572	ENSGT00940000155024.a.b	ENSGT00940000155363.v.a #28	ENSGT00940000157327.p	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.a.a #23	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000155907.b.b #23
Mexicana tetra	MODERN SPECIES	131	aph1b (ENSAMXG00000042980) #27	gtf2a2 (ENSAMXG00000033092)	trpm1a (ENSAMXG00000003769)	ENSAMXG00000003780	anxa2b (ENSAMXG00000000357)	rorab (ENSAMXG00000014990)	ENSAMXG00000032435	VPS13C (ENSAMXG00000031299)	fbxl8 (ENSAMXG00000034465)	tln2a (ENSAMXG00000000692) #33	TPM1 (ENSAMXG00000000672) #31	ENSAMXG00000035250	rab8b (ENSAMXG00000035654) #28	ENSAMXG00000043960	ENSAMXG00000035035	dapk2a (ENSAMXG00000010743) ##22	ENSAMXG00000024980 #23	ENSAMXG00000036180	ENSAMXG00000029281	ENSAMXG00000035748	ENSAMXG00000038697	ENSAMXG00000040356 #23	ENSAMXG00000014386 #23	ENSAMXG00000029117 #23	ENSAMXG00000035080	DOK4 (ENSAMXG00000035317)	ENSAMXG00000032793	ccdc102a (ENSAMXG00000032168)	adgrg1 (ENSAMXG00000043173)	ENSAMXG00000039628	slc7a6 (ENSAMXG00000033368)
Electric eel	MODERN SPECIES	191	tpd52l2a (ENSEEEG00000016116)	ppdpfa (ENSEEEG00000016118)	ENSEEEG00000016120	dnmt3ba (ENSEEEG00000016125)	mapre1a (ENSEEEG00000016303)	ENSEEEG00000016304	suv39h1a (ENSEEEG00000016305)	gpr173 (ENSEEEG00000016306)	ENSEEEG00000016307	sema3gb (ENSEEEG00000016309)	wasb (ENSEEEG00000016324)	ENSEEEG00000016326	sypa (ENSEEEG00000016328)	cacna1fb (ENSEEEG00000016331)	ENSEEEG00000016414	dapk2a (ENSEEEG00000016415) ##22	HERC1 (ENSEEEG00000016423) #23	aph1b (ENSEEEG00000016557) #27	SLC38A8 (ENSEEEG00000016558)	exosc6 (ENSEEEG00000016561)	tmppe (ENSEEEG00000016563)	mtbl (ENSEEEG00000016564)	gnao1b (ENSEEEG00000016567)	tradd (ENSEEEG00000016578)	fbxl8 (ENSEEEG00000016579)	ogfod1 (ENSEEEG00000016581)	ENSEEEG00000016615	vrk3 (ENSEEEG00000016618)	ENSEEEG00000016623	gfod2 (ENSEEEG00000016624)	ENSEEEG00000016626
Euteleostomi	ANCESTRAL SPECIES	27	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00940000164936	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000010331	ENSGT00940000165890
Actinopterygii	ANCESTRAL SPECIES	128									ENSGT00950000182891.a.a.b.b	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b #23	ENSGT00940000164936	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Neopterygii	ANCESTRAL SPECIES	30	ENSGT00940000158531	ENSGT00390000014572	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b #23	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Osteoglossocephalai	ANCESTRAL SPECIES		ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b #23	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000177441	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Otomorpha	ANCESTRAL SPECIES		ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Otophysi	ANCESTRAL SPECIES	13	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Characiphysae	ANCESTRAL SPECIES	6	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Characiphysae_b	ANCESTRAL SPECIES	5	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Characoidei	ANCESTRAL SPECIES	4	ENSGT00940000160522.c.b	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Mexicana tetra	MODERN SPECIES	23	ENSAMXG00000030246	GCNT3 (ENSAMXG00000000367)	ENSAMXG00000040092	OTUD7A (ENSAMXG00000000338)	klf13 (ENSAMXG00000041142)	trpm1b (ENSAMXG00000000326)	ENSAMXG00000030018 #28	rps27l (ENSAMXG00000042422)	DNAJA4 (ENSAMXG00000000320)	ACSBG1 (ENSAMXG00000000318)	idh3a (ENSAMXG00000000316)	lrrc61 (ENSAMXG00000032722)	cib2 (ENSAMXG00000042130)	ENSAMXG00000017915	TBC1D2B (ENSAMXG00000017913)	DAPK2 (ENSAMXG00000038379) ##22	ENSAMXG00000017909	ENSAMXG00000036848	fbxl22 (ENSAMXG00000017907) #24	usp3 (ENSAMXG00000017906) #25	ENSAMXG00000039657	CA12 (ENSAMXG00000038724) #26	MAN2C1 (ENSAMXG00000017902)	neil1 (ENSAMXG00000017901)	commd4 (ENSAMXG00000017897)	sema7a (ENSAMXG00000017889)	islr2 (ENSAMXG00000025117)	stra6 (ENSAMXG00000017884)	ENSAMXG00000017881	cyp11a1.1 (ENSAMXG00000033573)	stoml1 (ENSAMXG00000017874)
Red-bellied piranha	MODERN SPECIES	139	bnip2 (ENSPNAG00000002863)	GCNT3 (ENSPNAG00000013630)	ENSPNAG00000002850	OTUD7A (ENSPNAG00000013582)	klf13 (ENSPNAG00000013521)	trpm1b (ENSPNAG00000013509)	ENSPNAG00000013453 #28	ENSPNAG00000002737	DNAJA4 (ENSPNAG00000013415)	ACSBG1 (ENSPNAG00000013383)	idh3a (ENSPNAG00000002718)	lrrc61 (ENSPNAG00000002708)	cib2 (ENSPNAG00000013311)	ENSPNAG00000013289	TBC1D2B (ENSPNAG00000013270)	DAPK2 (ENSPNAG00000013223) ##22	ENSPNAG00000002604	fbxl22 (ENSPNAG00000013173) #24	usp3 (ENSPNAG00000002588) #25	ENSPNAG00000013112	CA12 (ENSPNAG00000002555) #26	MAN2C1 (ENSPNAG00000013073)	neil1 (ENSPNAG00000002490)	commd4 (ENSPNAG00000012935)	sema7a (ENSPNAG00000002451)	ENSPNAG00000002439
Channel catfish	MODERN SPECIES	5	bnip2 (ENSIPUG00000021249)	ENSIPUG00000021280	ENSIPUG00000021285	OTUD7A (ENSIPUG00000021300)	klf13 (ENSIPUG00000021351)	trpm1b (ENSIPUG00000021358)	Rab8b (ENSIPUG00000021408) #28	dnaja4 (ENSIPUG00000021428)	ENSIPUG00000021436	ACSBG1 (ENSIPUG00000021455)	idh3a (ENSIPUG00000021482)	Lrrc61 (ENSIPUG00000021571)	cib2 (ENSIPUG00000021605)	sh2d7 (ENSIPUG00000021614)	tbc1d2b (ENSIPUG00000021625)	dapk2 (ENSIPUG00000021663) ##22	ENSIPUG00000021680	FBXL22 (ENSIPUG00000021686) #24	USP3 (ENSIPUG00000021688) #25	ENSIPUG00000021723	ca12 (ENSIPUG00000021729) #26	man2c1 (ENSIPUG00000021766)	neil1 (ENSIPUG00000021750)	commd4 (ENSIPUG00000021837)	sema7a (ENSIPUG00000021824)	ENSIPUG00000021901	islr2 (ENSIPUG00000021908)	STRA6 (ENSIPUG00000021911)	cyp11a (ENSIPUG00000021950)	stoml1 (ENSIPUG00000022073)	nr2e3 (ENSIPUG00000022092)
Cyprinoidei	ANCESTRAL SPECIES	552																ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000175261
Cyprininae	ANCESTRAL SPECIES	135	ENSGT00940000154257.a.d	ENSGT00940000160522.c.a	ENSGT00940000158531.a	ENSGT00940000159331.b.y	ENSGT00730000111835	ENSGT00940000158999.j	ENSGT00940000164815.b.l	ENSGT00940000155024.a.a.d	ENSGT00940000155363.v.b.a #28	ENSGT00940000160380.r	ENSGT00950000182989.A.a.j	ENSGT00390000006479.h	ENSGT00940000157327.o.a.b	ENSGT00940000160977.e.b.b	ENSGT00940000157737.e	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b.c	ENSGT00390000003748.d #24	ENSGT00940000157850.a #25	ENSGT00390000015516.p	ENSGT00940000158358.a.a	ENSGT00550000074844.lb.b	ENSGT00390000008140.k.b.b	ENSGT01030000234648.a.b.a.a.b.cb.a.c	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01020000230364.a.a.b.b.g	ENSGT01020000230364.a.b.a	ENSGT00390000006290.`b	ENSGT00730000110895.b.a.o.a.i.b	ENSGT00940000156567.a.b.d
Goldfish	MODERN SPECIES	45	GCNT3 (ENSCARG00000068785)	OTUD7A (ENSCARG00000068778)	klf13 (ENSCARG00000068771)	trpm1b (ENSCARG00000068683)	RAB8B (ENSCARG00000068558) #28	rps27l (ENSCARG00000068517)	DNAJA4 (ENSCARG00000068506)	ENSCARG00000068499	ACSBG1 (ENSCARG00000068381)	idh3a (ENSCARG00000068321)	lrrc61 (ENSCARG00000068295)	cib2 (ENSCARG00000068281)	SH2D7 (ENSCARG00000068273)	ENSCARG00000068267	TBC1D2B (ENSCARG00000068236)	DAPK2 (ENSCARG00000068167) ##22	ENSCARG00000068159	ENSCARG00000068156	fbxl22 (ENSCARG00000068150) #24	usp3 (ENSCARG00000068131) #25	commd4 (ENSCARG00000068094)	sema7a (ENSCARG00000068084)	dldh (ENSCARG00000067340)	znf800a (ENSCARG00000067258)	grm8b (ENSCARG00000067196)	GPR37 (ENSCARG00000067187)	HYAL4 (ENSCARG00000067183)	hyal6 (ENSCARG00000067179)	ENSCARG00000067163	wasla (ENSCARG00000067078)	lmod2a (ENSCARG00000067062)
Zebrafish	MODERN SPECIES	17	ENSDARG00000103976	ENSDARG00000112209	zgc:123278 (ENSDARG00000096110)	hrasa (ENSDARG00000098497)	LRRC56 (ENSDARG00000096081)	RASSF7 (ENSDARG00000079917)	ENSDARG00000075252	irf7 (ENSDARG00000045661)	hic1l (ENSDARG00000045660)	TBC1D2B (ENSDARG00000061986)	ENSDARG00000109803	cib2 (ENSDARG00000102820)	lrrc61 (ENSDARG00000077357)	idh3a (ENSDARG00000030278)	ACSBG1 (ENSDARG00000062077)	DAPK2 (ENSDARG00000103666) ##22	ENSDARG00000088171	fbxl22 (ENSDARG00000096995) #24	usp3 (ENSDARG00000045641) #25	si:dkeyp-73b11.8 (ENSDARG00000090185)	CA12 (ENSDARG00000045644) #26	MAN2C1 (ENSDARG00000079835)	neil1 (ENSDARG00000018061)	commd4 (ENSDARG00000061946)	sema7a (ENSDARG00000078707)	dldh (ENSDARG00000008785)	ENSDARG00000092825	ENSDARG00000097622	znf800a (ENSDARG00000004594)	grm8b (ENSDARG00000076508)	pot1 (ENSDARG00000079915)
Clupeiformes	ANCESTRAL SPECIES	4	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.a	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366.cb	ENSGT00940000158575	ENSGT01030000234614.C
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	286															ENSDCDG00000019499	ENSDCDG00000019492 ##22	ENSDCDG00000019488 ##22	ENSDCDG00000019485	fbxl22 (ENSDCDG00000019482) #24	MAGI1 (ENSDCDG00000019404)	ENSDCDG00000019334	kbtbd8 (ENSDCDG00000019331)	LRIG1 (ENSDCDG00000018783)	slc25a26 (ENSDCDG00000018714)	MAGI1 (ENSDCDG00000018682)	ADAMTS9 (ENSDCDG00000018607)	nucks1a (ENSDCDG00000016460)	cldn19 (ENSDCDG00000016449)	P3H1 (ENSDCDG00000016270)	zgc:112255 (ENSDCDG00000016234)	ap5b1 (ENSDCDG00000016226)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	8	pla2g15 (ENSDCDG00000023230)	lcat (ENSDCDG00000023226)	ENSDCDG00000023216	uba2 (ENSDCDG00000023186)	ca5a (ENSDCDG00000023180)	slc7a5 (ENSDCDG00000023132)	klhdc4 (ENSDCDG00000023123)	jph3b (ENSDCDG00000023121)	ZCCHC14 (ENSDCDG00000023113)	map1lc3b (ENSDCDG00000023108)	wdr55 (ENSDCDG00000023104)	ppp1r15b (ENSDCDG00000023102)	smpd3 (ENSDCDG00000023100)	ENSDCDG00000023098	TBC1D2B (ENSDCDG00000023097)	DAPK2 (ENSDCDG00000023095) ##22	ENSDCDG00000023093	fbxl22 (ENSDCDG00000023092) #24	usp3 (ENSDCDG00000023065) #25	ENSDCDG00000023060	CA12 (ENSDCDG00000023055) #26	MAN2C1 (ENSDCDG00000022796)	neil1 (ENSDCDG00000022781)	commd4 (ENSDCDG00000022776)	islr2 (ENSDCDG00000022773)	sema7a (ENSDCDG00000022767)	islr2 (ENSDCDG00000022765)	stra6 (ENSDCDG00000022373)	ENSDCDG00000022353	cyp11a1.1 (ENSDCDG00000022348)	stoml1 (ENSDCDG00000022343)
Denticle herring	MODERN SPECIES	286														ENSDCDG00000019499	ENSDCDG00000019492 ##22	ENSDCDG00000019488 ##22	ENSDCDG00000019485	fbxl22 (ENSDCDG00000019482) #24	MAGI1 (ENSDCDG00000019404)	ENSDCDG00000019334	kbtbd8 (ENSDCDG00000019331)	LRIG1 (ENSDCDG00000018783)	slc25a26 (ENSDCDG00000018714)	MAGI1 (ENSDCDG00000018682)	ADAMTS9 (ENSDCDG00000018607)	nucks1a (ENSDCDG00000016460)	cldn19 (ENSDCDG00000016449)	P3H1 (ENSDCDG00000016270)	zgc:112255 (ENSDCDG00000016234)	ap5b1 (ENSDCDG00000016226)	ENSDCDG00000016194
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.b.c.a	ENSGT00940000155707	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155024.a.b.c.b	ENSGT00940000155363.v.a #28	ENSGT00950000182989.A.a	ENSGT00940000175407	ENSGT00940000157327.o.b	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000155363.v.a #28	ENSGT00950000182989.A.a	ENSGT00940000157327.o.b	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000164936.b	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00390000017249.e	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Northern pike	MODERN SPECIES	18	bnip2 (ENSELUG00000004566)	GCNT3 (ENSELUG00000004620)	GCNT3 (ENSELUG00000028569)	KCNJ1 (ENSELUG00000004178)	ENSELUG00000027070	trpm1b (ENSELUG00000004154)	ENSELUG00000004123 #28	RS27L (ENSELUG00000033046)	DNAJA4 (ENSELUG00000004060)	ACSBG1 (ENSELUG00000004032)	idh3a (ENSELUG00000003994)	lrrc61 (ENSELUG00000026742)	cib2 (ENSELUG00000003866)	ENSELUG00000003831	TBC1D2B (ENSELUG00000003801)	ENSELUG00000003738 ##22	GCNT3 (ENSELUG00000029111)	ENSELUG00000003690	fbxl22 (ENSELUG00000003676) #24	usp3 (ENSELUG00000003649) #25	ENSELUG00000003554	CA12 (ENSELUG00000000117) #26	MAN2C1 (ENSELUG00000003480)	neil1 (ENSELUG00000028663)	commd4 (ENSELUG00000003435)	sema7a (ENSELUG00000000113)	ENSELUG00000033859	islr2 (ENSELUG00000029779)	islr2 (ENSELUG00000025122)	stra6 (ENSELUG00000000108)	pycr1b (ENSELUG00000030476)
Salmoninae	ANCESTRAL SPECIES	271								ENSGT00940000160522.c.a.f	ENSGT00940000158531	ENSGT00940000159331.b.r.a	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f	ENSGT00390000009486
Huchen	MODERN SPECIES	8531														ENSHHUG00000008930	ENSHHUG00000008925	ENSHHUG00000008912 ##22
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b.c.a ##22
Salmo	ANCESTRAL SPECIES	695															ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.b.c.a ##22
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000100730	rorab (ENSSSAG00000015906)	anxa2b (ENSSSAG00000016098)	ENSSSAG00000101382	FOXB1 (ENSSSAG00000118611)	t2ag (ENSSSAG00000011770)	ENSSSAG00000089022	ENSSSAG00000112619	ENSSSAG00000006595	rab8b (ENSSSAG00000116323) #28	IDH3A (ENSSSAG00000106641)	ENSSSAG00000006390	ENSSSAG00000110291	ENSSSAG00000006371	ENSSSAG00000114608 ##22	ENSSSAG00000084348 ##22	ENSSSAG00000111489	ENSSSAG00000119946	ENSSSAG00000109639 #23	ENSSSAG00000109322	ENSSSAG00000100704	ENSSSAG00000088699	ENSSSAG00000085534	ENSSSAG00000111837	csk22 (ENSSSAG00000076656)	ENSSSAG00000105958	ENSSSAG00000010306	ENSSSAG00000115358	ENSSSAG00000009794	ENSSSAG00000009832	ENSSSAG00000092045
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000035732	ENSSSAG00000100730	rorab (ENSSSAG00000015906)	anxa2b (ENSSSAG00000016098)	ENSSSAG00000101382	FOXB1 (ENSSSAG00000118611)	t2ag (ENSSSAG00000011770)	ENSSSAG00000089022	ENSSSAG00000112619	ENSSSAG00000006595	rab8b (ENSSSAG00000116323) #28	IDH3A (ENSSSAG00000106641)	ENSSSAG00000006390	ENSSSAG00000110291	ENSSSAG00000006371	ENSSSAG00000114608 ##22	ENSSSAG00000084348 ##22	ENSSSAG00000111489	ENSSSAG00000119946	ENSSSAG00000109639 #23	ENSSSAG00000109322	ENSSSAG00000100704	ENSSSAG00000088699	ENSSSAG00000085534	ENSSSAG00000111837	csk22 (ENSSSAG00000076656)	ENSSSAG00000105958	ENSSSAG00000010306	ENSSSAG00000115358	ENSSSAG00000009794	ENSSSAG00000009832
River trout	MODERN SPECIES	3	ENSSTUG00000026564	ENSSTUG00000026561	ENSSTUG00000026557	hsbp1b (ENSSTUG00000026554)	ENSSTUG00000026548	KMT5B (ENSSTUG00000026542)	tp53i11a (ENSSTUG00000026534)	cd82a (ENSSTUG00000026523)	tspan18a (ENSSTUG00000026513)	ENSSTUG00000026508	ENSSTUG00000026461 #23	ENSSTUG00000026401 #23	idh3a (ENSSTUG00000026037)	CIB2 (ENSSTUG00000026017)	ENSSTUG00000025982	ENSSTUG00000025952 ##22	ENSSTUG00000025950	dapk2a (ENSSTUG00000025906) ##22	ENSSTUG00000025886 #23	ENSSTUG00000025879 #23	dapk2a (ENSSTUG00000025857) ##22	ENSSTUG00000025841	CIB2 (ENSSTUG00000025828)	idh3a (ENSSTUG00000025601)	ENSSTUG00000025586	rab8b (ENSSTUG00000025556) #28	trpm1a (ENSSTUG00000018310)	ENSSTUG00000018133	ENSSTUG00000018119	VPS13C (ENSSTUG00000015065)	ENSSTUG00000014940
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b.c.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b.c.a ##22
Chinook salmon	MODERN SPECIES	9	vtg3 (ENSOTSG00005018056)	ADGRL2 (ENSOTSG00005018192)	ENSOTSG00005044006	ttll7 (ENSOTSG00005044008)	ENSOTSG00005044230	uox (ENSOTSG00005044245)	SPATA1 (ENSOTSG00005044246)	ctbs (ENSOTSG00005044248)	ENSOTSG00005044250	SSX2IP (ENSOTSG00005044251)	ENSOTSG00005044252	lpar3 (ENSOTSG00005044253)	mcoln2 (ENSOTSG00005044254)	ENSOTSG00005044255	EPHB3 (ENSOTSG00005044256)	ENSOTSG00005044257 ##22	ttbk2b (ENSOTSG00005044258)	ENSOTSG00005044259	rhag (ENSOTSG00005044265)	rd3 (ENSOTSG00005044292)	slc30a1a (ENSOTSG00005044294)	ENSOTSG00005044295	nek2 (ENSOTSG00005044296)	PPP2R5A (ENSOTSG00005044298)	ENSOTSG00005044300	ENSOTSG00005044303	enpp1 (ENSOTSG00005044305)	kcnk3a (ENSOTSG00005044407)	slc22a2 (ENSOTSG00005044408)	slc35f6 (ENSOTSG00005044409)	hlx1 (ENSOTSG00005044410)
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b.c.b ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b.c.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b.c.b ##22
Chinook salmon	MODERN SPECIES	32	ENSOTSG00005017119	zgc:92907 (ENSOTSG00005017121)	rap2c (ENSOTSG00005017123)	gfra3 (ENSOTSG00005017124)	hars (ENSOTSG00005017125)	ENSOTSG00005017419	ENSOTSG00005017420	zgc:154054 (ENSOTSG00005017421)	SCOC (ENSOTSG00005017423)	rab33ba (ENSOTSG00005017424)	mlsl (ENSOTSG00005017429)	naa15a (ENSOTSG00005017479)	ENSOTSG00005017615	elf2a (ENSOTSG00005017618)	NOCT (ENSOTSG00005017620)	ENSOTSG00005017621 ##22	ENSOTSG00005017623 ##22	ENSOTSG00005017637	pcdh18b (ENSOTSG00005021506)	ENSOTSG00005021507	pcdh10b (ENSOTSG00005021508)	ENSOTSG00005021509	smim19 (ENSOTSG00005021510)	ENSOTSG00005021512	chrnb3b (ENSOTSG00005021513)	ENSOTSG00005021514	ENSOTSG00005021515	ENSOTSG00005021651	ENSOTSG00005021650	ENSOTSG00005021652	ANKRD13D (ENSOTSG00005021653)
Salmoninae_a	ANCESTRAL SPECIES	9					ENSGT00940000155840.A	ENSGT00390000018488	ENSGT00390000006883	ENSGT00940000160522.c.a.f	ENSGT00940000158531	ENSGT00940000159331.b.r.a	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b.d ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f	ENSGT00390000009486
Salmo	ANCESTRAL SPECIES	91					ENSGT00940000155840.A	ENSGT00390000018488	ENSGT00390000006883	ENSGT00940000160522.c.a.f	ENSGT00940000158531	ENSGT00940000159331.b.r.a.c	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b.d ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f	ENSGT00390000009486
River trout	MODERN SPECIES	33		ENSSTUG00000016734	ENSSTUG00000016715	cfap161 (ENSSTUG00000016698)	ENSSTUG00000016672	ENSSTUG00000016667	foxb1a (ENSSTUG00000016660)	ENSSTUG00000016649	bnip2 (ENSSTUG00000016629)	GCNT3 (ENSSTUG00000016624)	GCNT3 (ENSSTUG00000016621)	DNAJA4 (ENSSTUG00000016604)	lrrc61 (ENSSTUG00000016570)	ENSSTUG00000016539	TBC1D2B (ENSSTUG00000016380)	DAPK2 (ENSSTUG00000016347) ##22	fbxl22 (ENSSTUG00000016337) #24	usp3 (ENSSTUG00000015799) #25	ENSSTUG00000015713	CA12 (ENSSTUG00000015698) #26	MAN2C1 (ENSSTUG00000015308)	ENSSTUG00000015251	neil1 (ENSSTUG00000015239)	sema7a (ENSSTUG00000015219)	islr2 (ENSSTUG00000015212)	stra6 (ENSSTUG00000015174)	stoml1 (ENSSTUG00000015155)	arih1l (ENSSTUG00000015055)	ppcdc (ENSSTUG00000015044)	ENSSTUG00000015031	ENSSTUG00000015027
Atlantic salmon	MODERN SPECIES	15			ENSSSAG00000009084	ENSSSAG00000102336	ENSSSAG00000009067	ENSSSAG00000008793	foxb1a (ENSSSAG00000008783)	BNIP2 (ENSSSAG00000118860)	GCNT3 (ENSSSAG00000048660)	ENSSSAG00000096112	ENSSSAG00000008846	lrrc61 (ENSSSAG00000008819)	ENSSSAG00000095238	ENSSSAG00000110959	ENSSSAG00000095746	DAPK2 (ENSSSAG00000103481) ##22	ENSSSAG00000105833	ENSSSAG00000117356	ENSSSAG00000087291 #24	ENSSSAG00000094637	usp3 (ENSSSAG00000108007) #25	ENSSSAG00000106997	ENSSSAG00000085885 #26	ENSSSAG00000118913	ENSSSAG00000090937	ENSSSAG00000008687	ENSSSAG00000115163	ENSSSAG00000098331	ENSSSAG00000098361	islr2 (ENSSSAG00000098188)	stra6 (ENSSSAG00000103656)
Oncorhynchus	ANCESTRAL SPECIES	90						ENSGT00940000155840.A	ENSGT00390000018488	ENSGT00390000006883	ENSGT00940000160522.c.a.f	ENSGT00940000158531	ENSGT00940000159331.b.r.a	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000160977.e.b	ENSGT00940000157737.j	ENSGT00940000153424.a.a.c.b.d ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953.d	ENSGT01100000264496	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	115						ENSGT00940000155840.A	ENSGT00390000018488	ENSGT00390000006883	ENSGT00940000160522.c.a.f	ENSGT00940000158531	ENSGT00940000159331.b.r.a	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000160977.e.b	ENSGT00940000157737.j	ENSGT00940000153424.a.a.c.b.d ##22	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953.d	ENSGT01100000264496	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f
Coho salmon	MODERN SPECIES	1	ENSOKIG00005013292	ENSOKIG00005013494	cfap161 (ENSOKIG00005013502)	ENSOKIG00005013524	ENSOKIG00005013541	foxb1a (ENSOKIG00005013544)	BNIP2 (ENSOKIG00005013556)	ENSOKIG00005013569	GCNT3 (ENSOKIG00005013572)	DNAJA4 (ENSOKIG00005013590)	lrrc61 (ENSOKIG00005013596)	ENSOKIG00005013606	ENSOKIG00005013612	TBC1D2B (ENSOKIG00005013641)	ENSOKIG00005013724	DAPK2 (ENSOKIG00005013731) ##22	ENSOKIG00005013750	fbxl22 (ENSOKIG00005013755) #24	ENSOKIG00005013760	usp3 (ENSOKIG00005013832) #25	ENSOKIG00005014949	ENSOKIG00005014964	ENSOKIG00005014975	CA12 (ENSOKIG00005014986) #26	MAN2C1 (ENSOKIG00005015148)	ENSOKIG00005018089	neil1 (ENSOKIG00005018095)	sema7a (ENSOKIG00005018119)	islr2 (ENSOKIG00005018126)	stra6 (ENSOKIG00005018139)	ENSOKIG00005018210
Chinook salmon	MODERN SPECIES	32	zgc:92907 (ENSOTSG00005017121)	rap2c (ENSOTSG00005017123)	gfra3 (ENSOTSG00005017124)	hars (ENSOTSG00005017125)	ENSOTSG00005017419	ENSOTSG00005017420	zgc:154054 (ENSOTSG00005017421)	SCOC (ENSOTSG00005017423)	rab33ba (ENSOTSG00005017424)	mlsl (ENSOTSG00005017429)	naa15a (ENSOTSG00005017479)	ENSOTSG00005017615	elf2a (ENSOTSG00005017618)	NOCT (ENSOTSG00005017620)	ENSOTSG00005017621 ##22	ENSOTSG00005017623 ##22	ENSOTSG00005017637	pcdh18b (ENSOTSG00005021506)	ENSOTSG00005021507	pcdh10b (ENSOTSG00005021508)	ENSOTSG00005021509	smim19 (ENSOTSG00005021510)	ENSOTSG00005021512	chrnb3b (ENSOTSG00005021513)	ENSOTSG00005021514	ENSOTSG00005021515	ENSOTSG00005021651	ENSOTSG00005021650	ENSOTSG00005021652	ANKRD13D (ENSOTSG00005021653)	ENSOTSG00005021743
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000015638	ENSOMYG00000015604	ENSOMYG00000015028	foxb1a (ENSOMYG00000015034)	BNIP2 (ENSOMYG00000015037)	GCNT3 (ENSOMYG00000073281)	GCNT3 (ENSOMYG00000064502)	GCNT3 (ENSOMYG00000073425)	GCNT3 (ENSOMYG00000062751)	GCNT3 (ENSOMYG00000050268)	GCNT3 (ENSOMYG00000069796)	ENSOMYG00000015107	ENSOMYG00000015060	SH2D7 (ENSOMYG00000015355)	ENSOMYG00000060092	DAPK2 (ENSOMYG00000015373) ##22	fbxl22 (ENSOMYG00000015378) #24	usp3 (ENSOMYG00000015385) #25	ENSOMYG00000070598 #25	ENSOMYG00000060982	ENSOMYG00000050383	CA12 (ENSOMYG00000015551) #26	ENSOMYG00000015565	neil1 (ENSOMYG00000015576)	sema7a (ENSOMYG00000015585)	islr2 (ENSOMYG00000056245)	stra6 (ENSOMYG00000015816)	ENSOMYG00000067561	ENSOMYG00000057849	ENSOMYG00000050176	stoml1 (ENSOMYG00000015767)
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619	ENSGT00940000163168	ENSGT00940000173891	ENSGT00940000169460
Cod	MODERN SPECIES	22	foxb1a (ENSGMOG00000020232)	bnip2 (ENSGMOG00000006978)	ENSGMOG00000022524	GCNT3 (ENSGMOG00000031913)	ENSGMOG00000002036	klf13 (ENSGMOG00000032538)	trpm1b (ENSGMOG00000013441)	ENSGMOG00000013434 #28	rps27l (ENSGMOG00000013431)	DNAJA4 (ENSGMOG00000013423)	IDH3A (ENSGMOG00000013415)	lrrc61 (ENSGMOG00000013407)	CIB2 (ENSGMOG00000013399)	ENSGMOG00000024370	TBC1D2B (ENSGMOG00000013366)	DAPK2 (ENSGMOG00000013357) ##22	ENSGMOG00000037198	fbxl22 (ENSGMOG00000035572) #24	usp3 (ENSGMOG00000008316) #25	si:dkeyp-73b11.8 (ENSGMOG00000008319)	CA12 (ENSGMOG00000008322) #26	MAN2C1 (ENSGMOG00000008323)	neil1 (ENSGMOG00000023007)	commd4 (ENSGMOG00000008328)	sema7a (ENSGMOG00000008331)	islr2 (ENSGMOG00000008332)	stra6 (ENSGMOG00000008334)	ENSGMOG00000008336	cyp11a1.1 (ENSGMOG00000008338)	nr2e3 (ENSGMOG00000008342)	hexa (ENSGMOG00000008345)
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000235403	ENSGT00940000155619.c.a	ENSGT01030000235163	ENSGT00940000155619.d	ENSGT00940000163168	ENSGT00940000155619.c.b
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Tiger tail seahorse	MODERN SPECIES	249	GCNT3 (ENSHCOG00000012640)	ENSHCOG00000012655	OTUD7A (ENSHCOG00000012723)	klf13 (ENSHCOG00000012737)	ENSHCOG00000012759	ENSHCOG00000012803	ENSHCOG00000013173 #28	rps27l (ENSHCOG00000013205)	DNAJA4 (ENSHCOG00000013210)	IDH3A (ENSHCOG00000013348)	lrrc61 (ENSHCOG00000013378)	cib2 (ENSHCOG00000013397)	ENSHCOG00000000386	ENSHCOG00000013414	TBC1D2B (ENSHCOG00000013445)	DAPK2 (ENSHCOG00000013506) ##22	ENSHCOG00000013518	fbxl22 (ENSHCOG00000013523) #24	ENSHCOG00000013533	ENSHCOG00000013933 #26	MAN2C1 (ENSHCOG00000013987)	neil1 (ENSHCOG00000014018)	commd4 (ENSHCOG00000000394)	sema7a (ENSHCOG00000014100)	islr2 (ENSHCOG00000014105)	stra6 (ENSHCOG00000014143)	cyp11a1.1 (ENSHCOG00000014162)	stoml1 (ENSHCOG00000014203)	arih1 (ENSHCOG00000014228)	ENSHCOG00000014240	ppcdc (ENSHCOG00000014241)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT01060000249384	ENSGT00940000160977.e.a	ENSGT00940000153424.a.a.c.a.b ##22	ENSGT00940000155907.b.b #23	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Channel bull blenny	MODERN SPECIES	20	foxb1a (ENSCGOG00000023138)	bnip2 (ENSCGOG00000023145)	GCNT3 (ENSCGOG00000023155)	OTUD7A (ENSCGOG00000023161)	klf13 (ENSCGOG00000023195)	trpm1b (ENSCGOG00000003742)	RAB8B (ENSCGOG00000005340) #28	DNAJA4 (ENSCGOG00000005473)	rps27l (ENSCGOG00000005665)	ACSBG1 (ENSCGOG00000005734)	IDH3A (ENSCGOG00000006419)	lrrc61 (ENSCGOG00000006931)	cib2 (ENSCGOG00000006935)	ENSCGOG00000006939	TBC1D2B (ENSCGOG00000006940)	DAPK2 (ENSCGOG00000006996) ##22	ENSCGOG00000007215	fbxl22 (ENSCGOG00000007218) #24	usp3 (ENSCGOG00000007225) #25	ENSCGOG00000007319	CA12 (ENSCGOG00000007337) #26	MAN2C1 (ENSCGOG00000007356)	neil1 (ENSCGOG00000007588)	commd4 (ENSCGOG00000007590)	sema7a (ENSCGOG00000007603)	islr2 (ENSCGOG00000007605)	stra6 (ENSCGOG00000007607)	ENSCGOG00000007630	CYP11A1 (ENSCGOG00000007641)	stoml1 (ENSCGOG00000007838)	ENSCGOG00000007839
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.b.d	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Lumpfish	MODERN SPECIES	21	bnip2 (ENSCLMG00005001084)	GCNT3 (ENSCLMG00005001082)	ENSCLMG00005001081	OTUD7A (ENSCLMG00005001080)	klf13 (ENSCLMG00005001079)	ENSCLMG00005001078	trpm1b (ENSCLMG00005001070)	ENSCLMG00005001069 #28	rps27l (ENSCLMG00005001067)	DNAJA4 (ENSCLMG00005001066)	IDH3A (ENSCLMG00005001063)	lrrc61 (ENSCLMG00005001060)	cib2 (ENSCLMG00005001058)	ENSCLMG00005001056	TBC1D2B (ENSCLMG00005001048)	DAPK2 (ENSCLMG00005001038) ##22	ENSCLMG00005001036	fbxl22 (ENSCLMG00005001035) #24	usp3 (ENSCLMG00005001033) #25	ENSCLMG00005001030	ENSCLMG00005001029	CA12 (ENSCLMG00005001027) #26	neil1 (ENSCLMG00005001024)	commd4 (ENSCLMG00005001023)	sema7a (ENSCLMG00005001021)	islr2 (ENSCLMG00005001020)	stra6 (ENSCLMG00005001018)	ENSCLMG00005001017	cyp11a1.1 (ENSCLMG00005001002)	stoml1 (ENSCLMG00005001000)	nr2e3 (ENSCLMG00005000996)
Ballan wrasse	MODERN SPECIES	40	bnip2 (ENSLBEG00000017589)	GCNT3 (ENSLBEG00000017490)	OTUD7A (ENSLBEG00000017429)	klf13 (ENSLBEG00000017399)	trpm1b (ENSLBEG00000017324)	ENSLBEG00000017290 #28	rps27l (ENSLBEG00000017275)	DNAJA4 (ENSLBEG00000017248)	IDH3A (ENSLBEG00000017201)	ENSLBEG00000017180	ENSLBEG00000017164	lrrc61 (ENSLBEG00000017134)	cib2 (ENSLBEG00000017110)	ENSLBEG00000017080	TBC1D2B (ENSLBEG00000017052)	DAPK2 (ENSLBEG00000017027) ##22	ENSLBEG00000017010	fbxl22 (ENSLBEG00000016998) #24	usp3 (ENSLBEG00000016943) #25	ENSLBEG00000016912	CA12 (ENSLBEG00000016859) #26	MAN2C1 (ENSLBEG00000016738)	ENSLBEG00000016684	commd4 (ENSLBEG00000016670)	sema7a (ENSLBEG00000016623)	islr2 (ENSLBEG00000016601)	stra6 (ENSLBEG00000016572)	ENSLBEG00000016546	cyp11a1.1 (ENSLBEG00000016502)	nr2e3 (ENSLBEG00000016464)	hexa (ENSLBEG00000016294)
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000155744	ENSGT00940000169185
Tetraodon	MODERN SPECIES	4	anxa2a (ENSTNIG00000008392)	foxb1a (ENSTNIG00000008393)	bnip2 (ENSTNIG00000008394)	ENSTNIG00000008395	OTUD7A (ENSTNIG00000008396)	klf13 (ENSTNIG00000008397)	trpm1b (ENSTNIG00000008398)	ENSTNIG00000008399 #28	rps27l (ENSTNIG00000008400)	DNAJA4 (ENSTNIG00000008401)	IDH3A (ENSTNIG00000008402)	lrrc61 (ENSTNIG00000008403)	cib2 (ENSTNIG00000008404)	ENSTNIG00000008405	TBC1D2B (ENSTNIG00000008406)	DAPK2 (ENSTNIG00000008407) ##22	ENSTNIG00000008408	fbxl22 (ENSTNIG00000008409) #24	usp3 (ENSTNIG00000008410) #25	ENSTNIG00000001490	CA12 (ENSTNIG00000008411) #26	MAN2C1 (ENSTNIG00000008412)	neil1 (ENSTNIG00000008413)	commd4 (ENSTNIG00000008414)	sema7a (ENSTNIG00000008415)	islr2 (ENSTNIG00000008416)	stra6 (ENSTNIG00000008417)	cyp11a1.1 (ENSTNIG00000008418)	stoml1 (ENSTNIG00000008419)	arih1 (ENSTNIG00000008420)	ppcdc (ENSTNIG00000008421)
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Climbing perch	MODERN SPECIES	19	GCNT3 (ENSATEG00000026432)	GCNT3 (ENSATEG00000030009)	GCNT3 (ENSATEG00000028488)	ENSATEG00000007458	klf13 (ENSATEG00000007478)	ENSATEG00000007484	trpm1b (ENSATEG00000027764)	ENSATEG00000007572 #28	rps27l (ENSATEG00000025626)	DNAJA4 (ENSATEG00000007633)	IDH3A (ENSATEG00000007643)	lrrc61 (ENSATEG00000007699)	CIB2 (ENSATEG00000007713)	ENSATEG00000007743	TBC1D2B (ENSATEG00000007749)	DAPK2 (ENSATEG00000007816) ##22	ENSATEG00000007866	fbxl22 (ENSATEG00000007891) #24	usp3 (ENSATEG00000007915) #25	ENSATEG00000007997	CA12 (ENSATEG00000008047) #26	MAN2C1 (ENSATEG00000008308)	neil1 (ENSATEG00000008457)	commd4 (ENSATEG00000025527)	sema7a (ENSATEG00000008619)	islr2 (ENSATEG00000008628)	stra6 (ENSATEG00000008644)	ENSATEG00000008870	cyp11a1.1 (ENSATEG00000008908)	stoml1 (ENSATEG00000008950)	nr2e3 (ENSATEG00000009037)
Siamese fighting fish	MODERN SPECIES	17	bnip2 (ENSBSLG00000008506)	GCNT3 (ENSBSLG00000008570)	GCNT3 (ENSBSLG00000008574)	ENSBSLG00000008578	OTUD7A (ENSBSLG00000008595)	klf13 (ENSBSLG00000008623)	trpm1b (ENSBSLG00000008660)	RAB8B (ENSBSLG00000010602) #28	rps27l (ENSBSLG00000010749)	DNAJA4 (ENSBSLG00000010841)	IDH3A (ENSBSLG00000010877)	lrrc61 (ENSBSLG00000011199)	cib2 (ENSBSLG00000011221)	SH2D7 (ENSBSLG00000011228)	TBC1D2B (ENSBSLG00000011270)	DAPK2 (ENSBSLG00000011300) ##22	ENSBSLG00000011603	fbxl22 (ENSBSLG00000011639) #24	usp3 (ENSBSLG00000011872) #25	si:dkeyp-73b11.8 (ENSBSLG00000012761)	CA12 (ENSBSLG00000012772) #26	MAN2C1 (ENSBSLG00000012871)	neil1 (ENSBSLG00000012950)	sema7a (ENSBSLG00000012956)	islr2 (ENSBSLG00000012959)	stra6 (ENSBSLG00000012960)	ENSBSLG00000012981	cyp11a1.1 (ENSBSLG00000013006)	hexa (ENSBSLG00000014091)	arih1 (ENSBSLG00000014624)	ENSBSLG00000014828
Zig-zag eel	MODERN SPECIES	20	bnip2 (ENSMAMG00000007766)	GCNT3 (ENSMAMG00000007803)	ENSMAMG00000025009	ENSMAMG00000007660	klf13 (ENSMAMG00000007631)	ENSMAMG00000027557	ENSMAMG00000025359	ENSMAMG00000007545 #28	rps27l (ENSMAMG00000007538)	DNAJA4 (ENSMAMG00000007531)	IDH3A (ENSMAMG00000007463)	lrrc61 (ENSMAMG00000007451)	CIB2 (ENSMAMG00000007421)	ENSMAMG00000007413	TBC1D2B (ENSMAMG00000007374)	DAPK2 (ENSMAMG00000007325) ##22	ENSMAMG00000007312	fbxl22 (ENSMAMG00000007307) #24	usp3 (ENSMAMG00000007274) #25	si:dkeyp-73b11.8 (ENSMAMG00000007254)	CA12 (ENSMAMG00000007184) #26	MAN2C1 (ENSMAMG00000007061)	neil1 (ENSMAMG00000007164)	commd4 (ENSMAMG00000007025)	sema7a (ENSMAMG00000007015)	islr2 (ENSMAMG00000007007)	stra6 (ENSMAMG00000006937)	ENSMAMG00000006892	cyp11a1.1 (ENSMAMG00000006863)	nr2e3 (ENSMAMG00000006787)	hexa (ENSMAMG00000006611)
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000155744
Turbot	MODERN SPECIES	1	bnip2 (ENSSMAG00000016091)	GCNT3 (ENSSMAG00000016083)	ENSSMAG00000016052	ENSSMAG00000015993	klf13 (ENSSMAG00000015985)	trpm1b (ENSSMAG00000015926)	ENSSMAG00000015880 #28	rps27l (ENSSMAG00000015818)	DNAJA4 (ENSSMAG00000015751)	ENSSMAG00000036291	IDH3A (ENSSMAG00000015728)	lrrc61 (ENSSMAG00000015716)	cib2 (ENSSMAG00000015698)	ENSSMAG00000015663	TBC1D2B (ENSSMAG00000015620)	DAPK2 (ENSSMAG00000015584) ##22	ENSSMAG00000015570	fbxl22 (ENSSMAG00000025445) #24	usp3 (ENSSMAG00000015544) #25	si:dkeyp-73b11.8 (ENSSMAG00000015518)	CA12 (ENSSMAG00000015506) #26	MAN2C1 (ENSSMAG00000015304)	neil1 (ENSSMAG00000015491)	commd4 (ENSSMAG00000015462)	sema7a (ENSSMAG00000015292)	islr2 (ENSSMAG00000015283)	stra6 (ENSSMAG00000015243)	ENSSMAG00000015209	cyp11a1.1 (ENSSMAG00000015163)	nr2e3 (ENSSMAG00000015123)	arih1 (ENSSMAG00000015075)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.c.a.a ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Barramundi perch	MODERN SPECIES	17	bnip2 (ENSLCAG00010010624)	GCNT3 (ENSLCAG00010010633)	ENSLCAG00010010636	OTUD7A (ENSLCAG00010010657)	klf13 (ENSLCAG00010010659)	trpm1b (ENSLCAG00010010674)	ENSLCAG00010010745 #28	rps27l (ENSLCAG00010010750)	DNAJA4 (ENSLCAG00010010753)	ACSBG1 (ENSLCAG00010010774)	IDH3A (ENSLCAG00010010834)	lrrc61 (ENSLCAG00010010854)	cib2 (ENSLCAG00010010859)	ENSLCAG00010010864	TBC1D2B (ENSLCAG00010010867)	DAPK2 (ENSLCAG00010010870) ##22	ENSLCAG00010010872	fbxl22 (ENSLCAG00010010873) #24	usp3 (ENSLCAG00010010955) #25	ENSLCAG00010011363	CA12 (ENSLCAG00010011366) #26	MAN2C1 (ENSLCAG00010011398)	ENSLCAG00010011472	neil1 (ENSLCAG00010011474)	commd4 (ENSLCAG00010011476)	sema7a (ENSLCAG00010011483)	islr2 (ENSLCAG00010011486)	stra6 (ENSLCAG00010011487)	ENSLCAG00010011491	cyp11a1.1 (ENSLCAG00010011508)	nr2e3 (ENSLCAG00010011582)
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Oryzias	ANCESTRAL SPECIES	16	ENSGT00390000006883	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516.q	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000156563.b.n	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516.q	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Japanese Medaka HdrR	MODERN SPECIES	20	ICE2 (ENSORLG00000007629)	anxa2a (ENSORLG00000007609)	foxb1a (ENSORLG00000007576)	bnip2 (ENSORLG00000007570)	GCNT3 (ENSORLG00000007558)	OTUD7A (ENSORLG00000007552)	klf13 (ENSORLG00000007542)	trpm1b (ENSORLG00000007525)	RAB8B (ENSORLG00000029197) #28	nqo1 (ENSORLG00000022375)	DNAJA4 (ENSORLG00000007453)	lrrc61 (ENSORLG00000007446)	cib2 (ENSORLG00000007441)	ENSORLG00000007428	TBC1D2B (ENSORLG00000007421)	DAPK2 (ENSORLG00000007399) ##22	ENSORLG00000022171	fbxl22 (ENSORLG00000029992) #24	usp3 (ENSORLG00000007352) #25	si:dkeyp-73b11.8 (ENSORLG00000023180)	CA12 (ENSORLG00000007332) #26	MAN2C1 (ENSORLG00000007320)	neil1 (ENSORLG00000007274)	commd4 (ENSORLG00000007253)	sema7a (ENSORLG00000007240)	islr2 (ENSORLG00000007233)	stra6 (ENSORLG00000007226)	cyp11a (ENSORLG00000007190)	nr2e3 (ENSORLG00000007175)	hexa (ENSORLG00000007169)	arih1 (ENSORLG00000007132)
Chinese medaka	MODERN SPECIES	766	roraa (ENSOSIG00000016763)	ICE2 (ENSOSIG00000016774)	anxa2a (ENSOSIG00000016801)	foxb1a (ENSOSIG00000017193)	bnip2 (ENSOSIG00000017196)	GCNT3 (ENSOSIG00000017197)	ENSOSIG00000017199	OTUD7A (ENSOSIG00000017201)	trpm1b (ENSOSIG00000017275)	RAB8B (ENSOSIG00000021171) #28	ENSOSIG00000021190	DNAJA4 (ENSOSIG00000021192)	cib2 (ENSOSIG00000021197)	ENSOSIG00000021201	TBC1D2B (ENSOSIG00000021207)	DAPK2 (ENSOSIG00000021234) ##22	ENSOSIG00000021253	fbxl22 (ENSOSIG00000021257) #24	usp3 (ENSOSIG00000021272) #25	ENSOSIG00000021339	si:dkeyp-73b11.8 (ENSOSIG00000021342)	CA12 (ENSOSIG00000021346) #26	MAN2C1 (ENSOSIG00000021353)	neil1 (ENSOSIG00000021355)	commd4 (ENSOSIG00000021362)	sema7a (ENSOSIG00000021366)	islr2 (ENSOSIG00000021367)	stra6 (ENSOSIG00000021369)	cyp11a1.1 (ENSOSIG00000021390)	stoml1 (ENSOSIG00000021479)	nr2e3 (ENSOSIG00000021481)
Oryzias_b	ANCESTRAL SPECIES		ENSGT00390000006883	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516.q	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Javanese ricefish	MODERN SPECIES	20	roraa (ENSOJAG00000007093)	ENSOJAG00000006919	anxa2a (ENSOJAG00000006846)	foxb1a (ENSOJAG00000006834)	bnip2 (ENSOJAG00000006640)	GCNT3 (ENSOJAG00000006601)	OTUD7A (ENSOJAG00000006450)	klf13 (ENSOJAG00000006417)	trpm1b (ENSOJAG00000004245)	RAB8B (ENSOJAG00000004079) #28	DNAJA4 (ENSOJAG00000004028)	lrrc61 (ENSOJAG00000003937)	cib2 (ENSOJAG00000003911)	ENSOJAG00000003884	TBC1D2B (ENSOJAG00000003837)	DAPK2 (ENSOJAG00000018341) ##22	ENSOJAG00000018326	usp3 (ENSOJAG00000018072) #25	si:dkeyp-73b11.8 (ENSOJAG00000018029)	CA12 (ENSOJAG00000018022) #26	MAN2C1 (ENSOJAG00000017859)	neil1 (ENSOJAG00000017851)	commd4 (ENSOJAG00000017847)	sema7a (ENSOJAG00000017835)	islr2 (ENSOJAG00000017826)	stra6 (ENSOJAG00000017706)	cyp11a1.1 (ENSOJAG00000017367)	nr2e3 (ENSOJAG00000017186)	hexa (ENSOJAG00000015950)	arih1 (ENSOJAG00000015474)	ENSOJAG00000015447
Indian medaka	MODERN SPECIES	15	anxa2a (ENSOMEG00000022830)	foxb1a (ENSOMEG00000022809)	bnip2 (ENSOMEG00000000607)	GCNT3 (ENSOMEG00000000602)	ENSOMEG00000022759	OTUD7A (ENSOMEG00000022744)	klf13 (ENSOMEG00000022712)	ENSOMEG00000022706	trpm1b (ENSOMEG00000022683)	RAB8B (ENSOMEG00000022625) #28	DNAJA4 (ENSOMEG00000022617)	lrrc61 (ENSOMEG00000022601)	cib2 (ENSOMEG00000022586)	ENSOMEG00000022565	TBC1D2B (ENSOMEG00000022540)	DAPK2 (ENSOMEG00000022496) ##22	ENSOMEG00000022415	fbxl22 (ENSOMEG00000022408) #24	usp3 (ENSOMEG00000022387) #25	si:dkeyp-73b11.8 (ENSOMEG00000022308)	CA12 (ENSOMEG00000022269) #26	MAN2C1 (ENSOMEG00000022198)	neil1 (ENSOMEG00000022177)	commd4 (ENSOMEG00000022164)	sema7a (ENSOMEG00000022146)	islr2 (ENSOMEG00000022120)	stra6 (ENSOMEG00000022103)	cyp11a1.1 (ENSOMEG00000022047)	stoml1 (ENSOMEG00000021948)	nr2e3 (ENSOMEG00000021925)	hexa (ENSOMEG00000021908)
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Mangrove rivulus	MODERN SPECIES	1297																ENSKMAG00000010934 ##22
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
NAME_4	ANCESTRAL SPECIES	39	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707.d	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c
Sheepshead minnow	MODERN SPECIES	958	pdcd2l (ENSCVAG00000022071)	ENSCVAG00000022067	DUS2 (ENSCVAG00000022050)	SLC7A10 (ENSCVAG00000021983)	ENSCVAG00000021959	faap24 (ENSCVAG00000021944)	ENSCVAG00000021904	znf143b (ENSCVAG00000021894)	wee1 (ENSCVAG00000021857)	swap70b (ENSCVAG00000000555)	DNAJA4 (ENSCVAG00000021811)	lrrc61 (ENSCVAG00000021799)	cib2 (ENSCVAG00000021791)	ENSCVAG00000021761	TBC1D2B (ENSCVAG00000021752)	DAPK2 (ENSCVAG00000021743) ##22	ENSCVAG00000021715
Mummichog	MODERN SPECIES	2288	roraa (ENSFHEG00000002067)	ICE2 (ENSFHEG00000002047)	anxa2a (ENSFHEG00000002038)	foxb1a (ENSFHEG00000002026)	bnip2 (ENSFHEG00000002016)	GCNT3 (ENSFHEG00000001995)	OTUD7A (ENSFHEG00000001985)	klf13 (ENSFHEG00000001968)	trpm1b (ENSFHEG00000001960)	ENSFHEG00000001933 #28	DNAJA4 (ENSFHEG00000001918)	lrrc61 (ENSFHEG00000001914)	cib2 (ENSFHEG00000001908)	ENSFHEG00000001894	TBC1D2B (ENSFHEG00000001883)	DAPK2 (ENSFHEG00000001863) ##22	ENSFHEG00000001854	fbxl22 (ENSFHEG00000001850) #24	usp3 (ENSFHEG00000001846) #25
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Platyfish	MODERN SPECIES	11	roraa (ENSXMAG00000003228)	ICE2 (ENSXMAG00000003248)	anxa2a (ENSXMAG00000025260)	foxb1a (ENSXMAG00000003274)	bnip2 (ENSXMAG00000003275)	GCNT3 (ENSXMAG00000020327)	OTUD7A (ENSXMAG00000003293)	klf13 (ENSXMAG00000026587)	trpm1b (ENSXMAG00000003302)	RAB8B (ENSXMAG00000028589) #28	ENSXMAG00000003323	lrrc61 (ENSXMAG00000022994)	cib2 (ENSXMAG00000023041)	ENSXMAG00000021311	TBC1D2B (ENSXMAG00000003338)	DAPK2 (ENSXMAG00000003350) ##22	ENSXMAG00000026233	fbxl22 (ENSXMAG00000003361) #24	usp3 (ENSXMAG00000003362) #25	ENSXMAG00000021406	CA12 (ENSXMAG00000003380) #26	MAN2C1 (ENSXMAG00000015918)	neil1 (ENSXMAG00000015912)	commd4 (ENSXMAG00000015911)	sema7a (ENSXMAG00000023435)	stra6 (ENSXMAG00000015883)	cyp11a1.1 (ENSXMAG00000015863)	stoml1 (ENSXMAG00000015850)	nr2e3 (ENSXMAG00000015842)	hexa (ENSXMAG00000028285)	arih1 (ENSXMAG00000015819)
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
NAME_6	ANCESTRAL SPECIES	38	ENSGT00940000154257.a	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00730000111835	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b
Sailfin molly	MODERN SPECIES	820								trpm1b (ENSPLAG00000007474)	RAB8B (ENSPLAG00000007430) #28	DNAJA4 (ENSPLAG00000007403)	IDH3A (ENSPLAG00000007388)	lrrc61 (ENSPLAG00000007381)	cib2 (ENSPLAG00000007369)	ENSPLAG00000007341	TBC1D2B (ENSPLAG00000007333)	DAPK2 (ENSPLAG00000007283) ##22	ENSPLAG00000007259	fbxl22 (ENSPLAG00000007248) #24	usp3 (ENSPLAG00000007227) #25	ENSPLAG00000007209	CA12 (ENSPLAG00000007133) #26	MAN2C1 (ENSPLAG00000007094)	neil1 (ENSPLAG00000007023)	commd4 (ENSPLAG00000006986)
Amazon molly	MODERN SPECIES	332	foxb1a (ENSPFOG00000019893)	bnip2 (ENSPFOG00000004127)	GCNT3 (ENSPFOG00000019894)	ENSPFOG00000004278	OTUD7A (ENSPFOG00000004328)	klf13 (ENSPFOG00000004556)	ENSPFOG00000022657	trpm1b (ENSPFOG00000022795)	ENSPFOG00000004567 #28	DNAJA4 (ENSPFOG00000004644)	IDH3A (ENSPFOG00000004677)	lrrc61 (ENSPFOG00000004913)	cib2 (ENSPFOG00000004915)	ENSPFOG00000022726	TBC1D2B (ENSPFOG00000004997)	DAPK2 (ENSPFOG00000005336) ##22	ENSPFOG00000024231	fbxl22 (ENSPFOG00000005614) #24	usp3 (ENSPFOG00000005634) #25	ENSPFOG00000005738	ENSPFOG00000022767 #26	neil1 (ENSPFOG00000005744)	commd4 (ENSPFOG00000005797)	sema7a (ENSPFOG00000005805)	islr2 (ENSPFOG00000006027)	stra6 (ENSPFOG00000006050)	cyp11a1.1 (ENSPFOG00000006301)	stoml1 (ENSPFOG00000006419)	nr2e3 (ENSPFOG00000006516)	hexa (ENSPFOG00000006640)	arih1 (ENSPFOG00000006732)
Guppy	DUPLICATION
Guppy	DUPLICATION
Guppy	MODERN SPECIES	5												ENSPREG00000009612	rab11a (ENSPREG00000009605)	ENSPREG00000009589	ENSPREG00000009581 ##22	ENSPREG00000009570 ##22	ENSPREG00000009551 #23	ENSPREG00000009539	ENSPREG00000009518	ENSPREG00000009498	ENSPREG00000009445 #23	ENSPREG00000009422	ENSPREG00000009417	ENSPREG00000009407	ENSPREG00000009372	nqo1 (ENSPREG00000009341)	GABARAPL2 (ENSPREG00000009321)	KCNG4 (ENSPREG00000009312)	rpl12 (ENSPREG00000009233)	pole3 (ENSPREG00000009175)	kmt5b (ENSPREG00000009144)
Guppy	MODERN SPECIES	5													ENSPREG00000009612	rab11a (ENSPREG00000009605)	ENSPREG00000009589	ENSPREG00000009581 ##22	ENSPREG00000009570 ##22	ENSPREG00000009551 #23	ENSPREG00000009539	ENSPREG00000009518	ENSPREG00000009498	ENSPREG00000009445 #23	ENSPREG00000009422	ENSPREG00000009417	ENSPREG00000009407	ENSPREG00000009372	nqo1 (ENSPREG00000009341)	GABARAPL2 (ENSPREG00000009321)	KCNG4 (ENSPREG00000009312)	rpl12 (ENSPREG00000009233)	pole3 (ENSPREG00000009175)
Guppy	MODERN SPECIES	458	anxa2a (ENSPREG00000008814)	foxb1a (ENSPREG00000008832)	bnip2 (ENSPREG00000008860)	GCNT3 (ENSPREG00000008952)	ENSPREG00000008966	OTUD7A (ENSPREG00000008992)	klf13 (ENSPREG00000009032)	trpm1b (ENSPREG00000009051)	RAB8B (ENSPREG00000009090) #28	DNAJA4 (ENSPREG00000009132)	IDH3A (ENSPREG00000009216)	lrrc61 (ENSPREG00000009251)	cib2 (ENSPREG00000009271)	SH2D7 (ENSPREG00000009285)	TBC1D2B (ENSPREG00000009310)	DAPK2 (ENSPREG00000009361) ##22	ENSPREG00000009408	fbxl22 (ENSPREG00000009415) #24	usp3 (ENSPREG00000009424) #25	ENSPREG00000009480	CA12 (ENSPREG00000009520) #26	MAN2C1 (ENSPREG00000009619)	neil1 (ENSPREG00000009683)	commd4 (ENSPREG00000009697)	sema7a (ENSPREG00000009720)	ENSPREG00000009748	stra6 (ENSPREG00000009762)	cyp11a1.1 (ENSPREG00000009807)	stoml1 (ENSPREG00000009837)	nr2e3 (ENSPREG00000009907)	hexa (ENSPREG00000009965)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000234953	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000159331.b	ENSGT00940000176240	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c.c
Orange clownfish	MODERN SPECIES	18	foxb1a (ENSAPEG00000019175)	bnip2 (ENSAPEG00000019200)	GCNT3 (ENSAPEG00000019255)	OTUD7A (ENSAPEG00000019279)	klf13 (ENSAPEG00000019327)	trpm1b (ENSAPEG00000019345)	ENSAPEG00000019419 #28	DNAJA4 (ENSAPEG00000019440)	rps27l (ENSAPEG00000019458)	ACSBG1 (ENSAPEG00000019473)	IDH3A (ENSAPEG00000019498)	lrrc61 (ENSAPEG00000019528)	cib2 (ENSAPEG00000019537)	ENSAPEG00000019576	TBC1D2B (ENSAPEG00000019629)	DAPK2 (ENSAPEG00000019722) ##22	ENSAPEG00000019781	fbxl22 (ENSAPEG00000019793) #24	usp3 (ENSAPEG00000019815) #25	si:dkeyp-73b11.8 (ENSAPEG00000019867)	CA12 (ENSAPEG00000019875) #26	MAN2C1 (ENSAPEG00000019898)	neil1 (ENSAPEG00000019963)	commd4 (ENSAPEG00000019980)	sema7a (ENSAPEG00000020006)	islr2 (ENSAPEG00000020024)	stra6 (ENSAPEG00000020048)	ENSAPEG00000020184	cyp11a1.1 (ENSAPEG00000020236)	stoml1 (ENSAPEG00000020245)	nr2e3 (ENSAPEG00000020258)
Spiny chromis	MODERN SPECIES	6	GCNT3 (ENSAPOG00000006239)	ENSAPOG00000006253	OTUD7A (ENSAPOG00000006314)	klf13 (ENSAPOG00000006329)	trpm1b (ENSAPOG00000006419)	ENSAPOG00000006472 #28	rps27l (ENSAPOG00000006486)	DNAJA4 (ENSAPOG00000006506)	ACSBG1 (ENSAPOG00000006524)	IDH3A (ENSAPOG00000006585)	lrrc61 (ENSAPOG00000006610)	cib2 (ENSAPOG00000006617)	SH2D7 (ENSAPOG00000006658)	ENSAPOG00000006684	ENSAPOG00000006702	DAPK2 (ENSAPOG00000006757) ##22	ENSAPOG00000006780	fbxl22 (ENSAPOG00000006802) #24	usp3 (ENSAPOG00000006862) #25	ENSAPOG00000006881	CA12 (ENSAPOG00000006900) #26	MAN2C1 (ENSAPOG00000006998)	neil1 (ENSAPOG00000007020)	commd4 (ENSAPOG00000007030)	sema7a (ENSAPOG00000007069)	islr2 (ENSAPOG00000007082)	stra6 (ENSAPOG00000007157)	ENSAPOG00000007178	cyp11a1.1 (ENSAPOG00000007214)	stoml1 (ENSAPOG00000007241)	nr2e3 (ENSAPOG00000007343)
Bicolor damselfish	MODERN SPECIES	317	bnip2 (ENSSPAG00000016690)	GCNT3 (ENSSPAG00000016737)	ENSSPAG00000016755	OTUD7A (ENSSPAG00000016768)	klf13 (ENSSPAG00000016818)	trpm1b (ENSSPAG00000016828)	RAB8B (ENSSPAG00000016932) #28	rps27l (ENSSPAG00000016985)	DNAJA4 (ENSSPAG00000017490)	ACSBG1 (ENSSPAG00000017510)	IDH3A (ENSSPAG00000017582)	lrrc61 (ENSSPAG00000017669)	cib2 (ENSSPAG00000017694)	SH2D7 (ENSSPAG00000017734)	TBC1D2B (ENSSPAG00000017785)	DAPK2 (ENSSPAG00000017851) ##22	ENSSPAG00000017897	fbxl22 (ENSSPAG00000017921) #24	usp3 (ENSSPAG00000017933) #25	ENSSPAG00000017988	CA12 (ENSSPAG00000018001) #26	ENSSPAG00000018019	ENSSPAG00000018039	neil1 (ENSSPAG00000018067)	commd4 (ENSSPAG00000018089)	sema7a (ENSSPAG00000018133)	islr2 (ENSSPAG00000018158)	stra6 (ENSSPAG00000018165)	ENSSPAG00000018213	cyp11a1.1 (ENSSPAG00000018244)	stoml1 (ENSSPAG00000018284)
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00940000155707	ENSGT00950000182891.a.a.a	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000234953.a	ENSGT01030000234953.b	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C.b	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575
Midas cichlid	MODERN SPECIES	385	foxb1a (ENSACIG00000001527)	bnip2 (ENSACIG00000001548)	GCNT3 (ENSACIG00000001573)	OTUD7A (ENSACIG00000001597)	klf13 (ENSACIG00000001641)	trpm1b (ENSACIG00000001658)	RAB8B (ENSACIG00000001729) #28	rps27l (ENSACIG00000001758)	DNAJA4 (ENSACIG00000002214)	ACSBG1 (ENSACIG00000002225)	IDH3A (ENSACIG00000002251)	lrrc61 (ENSACIG00000002276)	cib2 (ENSACIG00000002332)	ENSACIG00000002348	TBC1D2B (ENSACIG00000002367)	DAPK2 (ENSACIG00000002463) ##22	ENSACIG00000002489	fbxl22 (ENSACIG00000002501) #24	usp3 (ENSACIG00000002514) #25	ENSACIG00000002553	ENSACIG00000002557	ENSACIG00000002576	ENSACIG00000002600	CA12 (ENSACIG00000002627) #26	MAN2C1 (ENSACIG00000002745)	neil1 (ENSACIG00000002796)	commd4 (ENSACIG00000002831)	sema7a (ENSACIG00000002846)	islr2 (ENSACIG00000002865)	stra6 (ENSACIG00000002885)	ENSACIG00000002930
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000173891.c	ENSGT01030000234953.a	ENSGT01030000234953.b	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C.b	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000173891.c	ENSGT01030000234953.a	ENSGT01030000234953.b	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C.b	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000160522.c.a	ENSGT00940000158531	ENSGT00940000159331.b	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT01030000234953.a.b	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C.b	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000158531	ENSGT00940000159331.b.n	ENSGT00940000159331.b.m	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000164331	ENSGT01030000234953.b	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C.b	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00940000158531	ENSGT00940000159331.b.n	ENSGT00940000159331.b.m	ENSGT00940000158999	ENSGT00940000164815.b	ENSGT00940000155024.a.a	ENSGT00940000155363.v.b #28	ENSGT00950000182891.a.a.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A.b	ENSGT00390000006479	ENSGT00940000157327.o.a	ENSGT00940000160977.e.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000164936.b	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000168688	ENSGT00940000164331	ENSGT01030000234953.b	ENSGT00940000159282 #26	ENSGT01030000234638.a	ENSGT00940000153230.C.b	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575
Eastern happy	MODERN SPECIES	19	GCNT3 (ENSACLG00000018566)	ENSACLG00000018563	GCNT3 (ENSACLG00000018532)	OTUD7A (ENSACLG00000018430)	klf13 (ENSACLG00000018416)	trpm1b (ENSACLG00000018230)	RAB8B (ENSACLG00000018374) #28	rps27l (ENSACLG00000018208)	DNAJA4 (ENSACLG00000018191)	ACSBG1 (ENSACLG00000018121)	IDH3A (ENSACLG00000018016)	lrrc61 (ENSACLG00000017982)	cib2 (ENSACLG00000017964)	ENSACLG00000017947	TBC1D2B (ENSACLG00000017911)	DAPK2 (ENSACLG00000017870) ##22	ENSACLG00000017762	ENSACLG00000017755	fbxl22 (ENSACLG00000017746) #24	usp3 (ENSACLG00000017672) #25	ENSACLG00000017662	ENSACLG00000017647	ENSACLG00000017637	ENSACLG00000017627	CA12 (ENSACLG00000017374) #26	MAN2C1 (ENSACLG00000017213)	neil1 (ENSACLG00000017173)	commd4 (ENSACLG00000017140)	sema7a (ENSACLG00000017086)	islr2 (ENSACLG00000017072)	stra6 (ENSACLG00000017044)
Zebra mbuna	MODERN SPECIES	1110	foxb1a (ENSMZEG00005022448)	bnip2 (ENSMZEG00005022453)	GCNT3 (ENSMZEG00005022458)	OTUD7A (ENSMZEG00005022463)	klf13 (ENSMZEG00005022468)	trpm1b (ENSMZEG00005022471)	RAB8B (ENSMZEG00005022476) #28	rps27l (ENSMZEG00005022480)	DNAJA4 (ENSMZEG00005022484)	ACSBG1 (ENSMZEG00005022487)	IDH3A (ENSMZEG00005022490)	lrrc61 (ENSMZEG00005022495)	cib2 (ENSMZEG00005022497)	SH2D7 (ENSMZEG00005022499)	TBC1D2B (ENSMZEG00005022501)	DAPK2 (ENSMZEG00005022504) ##22	ENSMZEG00005022506	fbxl22 (ENSMZEG00005022508) #24	usp3 (ENSMZEG00005022511) #25	ENSMZEG00005022515	ENSMZEG00005022516	CA12 (ENSMZEG00005022519) #26	MAN2C1 (ENSMZEG00005022527)	neil1 (ENSMZEG00005022536)	commd4 (ENSMZEG00005022541)	sema7a (ENSMZEG00005022544)	islr2 (ENSMZEG00005022548)	stra6 (ENSMZEG00005022550)	cyp11a1.1 (ENSMZEG00005022555)	stoml1 (ENSMZEG00005022560)	nr2e3 (ENSMZEG00005022568)
Burton s mouthbrooder	MODERN SPECIES	368	anxa2a (ENSHBUG00000014691)	foxb1a (ENSHBUG00000014676)	bnip2 (ENSHBUG00000014659)	OTUD7A (ENSHBUG00000014603)	klf13 (ENSHBUG00000014535)	trpm1b (ENSHBUG00000014524)	RAB8B (ENSHBUG00000014451) #28	DNAJA4 (ENSHBUG00000014388)	rps27l (ENSHBUG00000014415)	ACSBG1 (ENSHBUG00000014365)	IDH3A (ENSHBUG00000014344)	lrrc61 (ENSHBUG00000014314)	cib2 (ENSHBUG00000014309)	ENSHBUG00000014276	TBC1D2B (ENSHBUG00000014259)	DAPK2 (ENSHBUG00000014199) ##22	ENSHBUG00000014149	fbxl22 (ENSHBUG00000014143) #24	usp3 (ENSHBUG00000014128) #25	ENSHBUG00000014082	ENSHBUG00000014077	CA12 (ENSHBUG00000014064) #26	MAN2C1 (ENSHBUG00000014037)	neil1 (ENSHBUG00000013915)	commd4 (ENSHBUG00000013910)	sema7a (ENSHBUG00000013895)	islr2 (ENSHBUG00000013882)	stra6 (ENSHBUG00000013870)	ENSHBUG00000013854	cyp11a1.1 (ENSHBUG00000013842)	stoml1 (ENSHBUG00000013845)
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	501											dis3l (ENSNBRG00000012970)	ENSNBRG00000012960	ENSNBRG00000012912	rab11a (ENSNBRG00000012893)	ENSNBRG00000012876	ENSNBRG00000012855 ##22	ENSNBRG00000012844	ENSNBRG00000012828	ENSNBRG00000012817 #23	ENSNBRG00000012770 #23	cd82a (ENSNBRG00000012620)	kmt5b (ENSNBRG00000012592)	pole3 (ENSNBRG00000012570)	ENSNBRG00000012558	ENSNBRG00000012535	STARD5 (ENSNBRG00000012527)	ENSNBRG00000012490
Lyretail cichlid	MODERN SPECIES	305	bnip2 (ENSNBRG00000018193)	ENSNBRG00000018167	OTUD7A (ENSNBRG00000018136)	klf13 (ENSNBRG00000018119)	trpm1b (ENSNBRG00000018037)	ENSNBRG00000018010 #28	DNAJA4 (ENSNBRG00000017991)	rps27l (ENSNBRG00000017973)	ACSBG1 (ENSNBRG00000017931)	IDH3A (ENSNBRG00000017906)	lrrc61 (ENSNBRG00000017807)	cib2 (ENSNBRG00000017767)	SH2D7 (ENSNBRG00000017739)	ENSNBRG00000017724	ENSNBRG00000017704	DAPK2 (ENSNBRG00000017685) ##22	ENSNBRG00000017669	fbxl22 (ENSNBRG00000017655) #24	usp3 (ENSNBRG00000017615) #25	ENSNBRG00000017525	ENSNBRG00000017497	ENSNBRG00000017475	ENSNBRG00000017458	CA12 (ENSNBRG00000017306) #26	MAN2C1 (ENSNBRG00000017224)	ENSNBRG00000017209	neil1 (ENSNBRG00000017196)	commd4 (ENSNBRG00000017154)	sema7a (ENSNBRG00000017117)	stra6 (ENSNBRG00000017079)	ENSNBRG00000017050
Sarcopterygii	ANCESTRAL SPECIES	49	ENSGT00940000157244	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399	ENSGT00940000162656	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.b.b.b.b.a	ENSGT01030000234542.b.a.a.a.b ##31	ENSGT01030000234542.b.a.a.b.a.b ##31	ENSGT00940000154699 #33
Tetrapoda	ANCESTRAL SPECIES	11				ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000175407	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.b.b.b.b.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000175407	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT01030000234542.b.a.a.b.a.b ##31
Mammalia	ANCESTRAL SPECIES	28	ENSGT00390000006654	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Theria	ANCESTRAL SPECIES	22	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Common wonbat	MODERN SPECIES	581	ANKDD1A (ENSVURG00010016514) #8	ENSVURG00010016494	PLEKHO2 (ENSVURG00010016489) #9	PIF1 (ENSVURG00010016477) #10	RBPMS2 (ENSVURG00010016465) #11	OAZ2 (ENSVURG00010016452) #12	ZNF609 (ENSVURG00010016444) #14	TRIP4 (ENSVURG00010016411) #15	ENSVURG00010016398 #16	ENSVURG00010016389	ENSVURG00010016372 #17	PPIB (ENSVURG00010016362) #18	ENSVURG00010016350 #19	SNX1 (ENSVURG00010016300) #20	CIAO2A (ENSVURG00010016275) #21	DAPK2 (ENSVURG00010016252) ##22	HERC1 (ENSVURG00010016220) #23	FBXL22 (ENSVURG00010016203) #24	USP3 (ENSVURG00010016157) #25	CA12 (ENSVURG00010016134) #26	APH1B (ENSVURG00010016112) #27	RAB8B (ENSVURG00010016099) #28	ENSVURG00010016082	LACTB (ENSVURG00010016066) #30	TPM1 (ENSVURG00010015990) #31	TLN2 (ENSVURG00010015950) #33	ENSVURG00010015922	ENSVURG00010015913	VPS13C (ENSVURG00010015870)	RORA (ENSVURG00010015835)	ENSVURG00010015814
Wallaby	MODERN SPECIES	3314																ENSMEUG00000010439 ##22
Eutheria	ANCESTRAL SPECIES	8	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00950000186329	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT01030000234542.b.a.a.b.a.b.l ##31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00940000164336 #29	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00930000152855	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Microbat	MODERN SPECIES	1052	ANKDD1A (ENSMLUG00000016394) #8	ENSMLUG00000029215	PLEKHO2 (ENSMLUG00000016390) #9	PIF1 (ENSMLUG00000025361) #10	RBPMS2 (ENSMLUG00000013394) #11	OAZ2 (ENSMLUG00000022795) #12	ZNF609 (ENSMLUG00000013380) #14	ENSMLUG00000025127	TRIP4 (ENSMLUG00000013367) #15	ENSMLUG00000013366 #16	CSNK1G1 (ENSMLUG00000015983) #17	PPIB (ENSMLUG00000015974) #18	SNX22 (ENSMLUG00000015965) #19	SNX1 (ENSMLUG00000015949) #20	ENSMLUG00000028233 #21	DAPK2 (ENSMLUG00000000714) ##22	HERC1 (ENSMLUG00000015305) #23	FBXL22 (ENSMLUG00000024826) #24	USP3 (ENSMLUG00000015294) #25	ENSMLUG00000000719 #21	CA12 (ENSMLUG00000007452) #26	APH1B (ENSMLUG00000026317) #27	RAB8B (ENSMLUG00000015889) #28	ENSMLUG00000005516 #30	TPM1 (ENSMLUG00000007003) #31	TLN2 (ENSMLUG00000009302) #33	ENSMLUG00000026677
Megabat	MODERN SPECIES	937											CSNK1G1 (ENSPVAG00000016873) #17	PPIB (ENSPVAG00000016872) #18	SNX22 (ENSPVAG00000016871) #19	SNX1 (ENSPVAG00000016870) #20	CIAO2A (ENSPVAG00000016869) #21	DAPK2 (ENSPVAG00000016867) ##22	HERC1 (ENSPVAG00000016862) #23	FBXL22 (ENSPVAG00000016860) #24	USP3 (ENSPVAG00000016857) #25
Carnivora	ANCESTRAL SPECIES		ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206
Caniformia	ANCESTRAL SPECIES	12	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT01070000253911	ENSGT00940000157387
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007.p.b #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699.f #33	ENSGT00950000183083.a.d.a	ENSGT01070000253911	ENSGT00940000157387	ENSGT00390000006883
Ursus	ANCESTRAL SPECIES	37	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007.p.b #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00950000185788	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28
Polar bear	MODERN SPECIES	320	SLC51B (ENSUMAG00000012546)	MTFMT (ENSUMAG00000012561)	SPG21 (ENSUMAG00000012587) #7	PLEKHO2 (ENSUMAG00000012599) #9	PIF1 (ENSUMAG00000012605) #10	RBPMS2 (ENSUMAG00000012614) #11	OAZ2 (ENSUMAG00000012619) #12	ZNF609 (ENSUMAG00000012625) #14	TRIP4 (ENSUMAG00000012640) #15	PCLAF (ENSUMAG00000012643) #16	CSNK1G1 (ENSUMAG00000012647) #17	PPIB (ENSUMAG00000012657) #18	SNX22 (ENSUMAG00000012660) #19	SNX1 (ENSUMAG00000012667) #20	CIAO2A (ENSUMAG00000012686) #21	DAPK2 (ENSUMAG00000012690) ##22	ENSUMAG00000012698	HERC1 (ENSUMAG00000012791) #23	ENSUMAG00000013533 #24	USP3 (ENSUMAG00000013554) #25	CA12 (ENSUMAG00000013569) #26	APH1B (ENSUMAG00000013596) #27	ENSUMAG00000013601	RAB8B (ENSUMAG00000013613) #28
American black bear	MODERN SPECIES	3864																ENSUAMG00000017976 ##22	ENSUAMG00000017975	ENSUAMG00000017974 #23
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Ferret	MODERN SPECIES	228	MTFMT (ENSMPUG00000000527)	SPG21 (ENSMPUG00000000528) #7	ANKDD1A (ENSMPUG00000000544) #8	PLEKHO2 (ENSMPUG00000000547) #9	PIF1 (ENSMPUG00000000549) #10	RBPMS2 (ENSMPUG00000000553) #11	OAZ2 (ENSMPUG00000000565) #12	ZNF609 (ENSMPUG00000000567) #14	TRIP4 (ENSMPUG00000000568) #15	PCLAF (ENSMPUG00000000569) #16	CSNK1G1 (ENSMPUG00000000571) #17	PPIB (ENSMPUG00000000574) #18	SNX22 (ENSMPUG00000000582) #19	SNX1 (ENSMPUG00000000602) #20	CIAO2A (ENSMPUG00000000605) #21	DAPK2 (ENSMPUG00000000608) ##22	HERC1 (ENSMPUG00000000611) #23	FBXL22 (ENSMPUG00000000624) #24	USP3 (ENSMPUG00000000628) #25	CA12 (ENSMPUG00000000635) #26	APH1B (ENSMPUG00000000639) #27	RAB8B (ENSMPUG00000000643) #28	RPS27L (ENSMPUG00000000647)	LACTB (ENSMPUG00000000649) #30	TPM1 (ENSMPUG00000000651) #31	TLN2 (ENSMPUG00000000655) #33	ENSMPUG00000000658	VPS13C (ENSMPUG00000000660)	ENSMPUG00000000744	RORA (ENSMPUG00000000745)	ICE2 (ENSMPUG00000000759)
Canidae	ANCESTRAL SPECIES	15	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921.b	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00390000003248.a.a.a.b	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000169428	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT00950000184921.b	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a
Dingo	MODERN SPECIES	205	SPG21 (ENSCAFG00020008856) #7	ANKDD1A (ENSCAFG00020008860) #8	PLEKHO2 (ENSCAFG00020008874) #9	PIF1 (ENSCAFG00020008886) #10	ENSCAFG00020008906	RBPMS2 (ENSCAFG00020008908) #11	OAZ2 (ENSCAFG00020008922) #12	ZNF609 (ENSCAFG00020008938) #14	TRIP4 (ENSCAFG00020008960) #15	ENSCAFG00020008966	CSNK1G1 (ENSCAFG00020009012) #17	PPIB (ENSCAFG00020009317) #18	SNX22 (ENSCAFG00020009320) #19	SNX1 (ENSCAFG00020009326) #20	CIAO2A (ENSCAFG00020009343) #21	DAPK2 (ENSCAFG00020009392) ##22	ENSCAFG00020009407	ENSCAFG00020009410 #23	FBXL22 (ENSCAFG00020009419) #24	USP3 (ENSCAFG00020009426) #25	CA12 (ENSCAFG00020009454) #26	APH1B (ENSCAFG00020009470) #27	RAB8B (ENSCAFG00020009474) #28	ENSCAFG00020009482	ENSCAFG00020009484 #29	LACTB (ENSCAFG00020009493) #30	TPM1 (ENSCAFG00020009521) #31	ENSCAFG00020009531	TLN2 (ENSCAFG00020009609) #33	VPS13C (ENSCAFG00020010673)	ENSCAFG00020010727
Red fox	MODERN SPECIES		ANKDD1A (ENSVVUG00000013820) #8	PLEKHO2 (ENSVVUG00000013810) #9	ENSVVUG00000013805	RBPMS2 (ENSVVUG00000013801) #11	ENSVVUG00000013799 #13	ZNF609 (ENSVVUG00000013796) #14	TRIP4 (ENSVVUG00000013776) #15	PCLAF (ENSVVUG00000013774) #16	ENSVVUG00000013767	CSNK1G1 (ENSVVUG00000013708) #17	PPIB (ENSVVUG00000013694) #18	SNX22 (ENSVVUG00000013682) #19	SNX1 (ENSVVUG00000013655) #20	ENSVVUG00000013649	CIAO2A (ENSVVUG00000013643) #21	DAPK2 (ENSVVUG00000013611) ##22	HERC1 (ENSVVUG00000012408) #23	FBXL22 (ENSVVUG00000012296) #24	ENSVVUG00000011501 #25	ENSVVUG00000011447 #25	CA12 (ENSVVUG00000011399) #26	APH1B (ENSVVUG00000011390) #27	ENSVVUG00000011389	RAB8B (ENSVVUG00000011367) #28	ENSVVUG00000011320	LACTB (ENSVVUG00000011297) #30	ENSVVUG00000011290	TPM1 (ENSVVUG00000011282) #31	TLN2 (ENSVVUG00000009412) #33	VPS13C (ENSVVUG00000002780)	ENSVVUG00000002002
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
American bison	MODERN SPECIES	3065	PTGDR (ENSBBBG00000010775)	PLEKHO2 (ENSBBBG00000010766) #9	PIF1 (ENSBBBG00000010755) #10	ENSBBBG00000010738 #11	OAZ2 (ENSBBBG00000010729) #12	ENSBBBG00000010721 #13	ZNF609 (ENSBBBG00000010716) #14	ENSBBBG00000001869	TRIP4 (ENSBBBG00000010678) #15	PCLAF (ENSBBBG00000001865) #16	CSNK1G1 (ENSBBBG00000010615) #17	PPIB (ENSBBBG00000010506) #18	SNX22 (ENSBBBG00000010498) #19	SNX1 (ENSBBBG00000010491) #20	CIAO2A (ENSBBBG00000010454) #21	DAPK2 (ENSBBBG00000008435) ##22	HERC1 (ENSBBBG00000008434) #23	FBXL22 (ENSBBBG00000010384) #24	USP3 (ENSBBBG00000010371) #25	CA12 (ENSBBBG00000010315) #26	ENSBBBG00000010302 #27	ENSBBBG00000010299	ENSBBBG00000010291	ENSBBBG00000000108	ENSBBBG00000000128	ENSBBBG00000008318	ENSBBBG00000010249	ENSBBBG00000010177	ENSBBBG00000010168
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Goat	MODERN SPECIES	1	PTGDR (ENSCHIG00000025921)	PLEKHO2 (ENSCHIG00000025653) #9	PIF1 (ENSCHIG00000014856) #10	RBPMS2 (ENSCHIG00000024439) #11	OAZ2 (ENSCHIG00000012878) #12	ENSCHIG00000009189 #13	ZNF609 (ENSCHIG00000018695) #14	TRIP4 (ENSCHIG00000023818) #15	ENSCHIG00000014821	PCLAF (ENSCHIG00000026661) #16	CSNK1G1 (ENSCHIG00000011234) #17	PPIB (ENSCHIG00000019546) #18	SNX22 (ENSCHIG00000020098) #19	SNX1 (ENSCHIG00000021997) #20	ENSCHIG00000006307 #21	DAPK2 (ENSCHIG00000002285) ##22	HERC1 (ENSCHIG00000012880) #23	FBXL22 (ENSCHIG00000023260) #24	ENSCHIG00000015955	USP3 (ENSCHIG00000019905) #25	CA12 (ENSCHIG00000004709) #26	APH1B (ENSCHIG00000019602) #27	ENSCHIG00000016246	RAB8B (ENSCHIG00000019412) #28	RPS27L (ENSCHIG00000012945)	LACTB (ENSCHIG00000027114) #30	ENSCHIG00000018051	TPM1 (ENSCHIG00000020204) #31	TLN2 (ENSCHIG00000021342) #33	ENSCHIG00000024274	ENSCHIG00000009551
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000025691	PTGDR (ENSCHYG00000025706)	PLEKHO2 (ENSCHYG00000004921) #9	PIF1 (ENSCHYG00000005000) #10	RBPMS2 (ENSCHYG00000005045) #11	OAZ2 (ENSCHYG00000005167) #12	ZNF609 (ENSCHYG00000005274) #14	ENSCHYG00000005301	TRIP4 (ENSCHYG00000005334) #15	PCLAF (ENSCHYG00000005442) #16	CSNK1G1 (ENSCHYG00000005550) #17	ENSCHYG00000005700 #18	SNX22 (ENSCHYG00000005765) #19	SNX1 (ENSCHYG00000005852) #20	CIAO2A (ENSCHYG00000005972) #21	ENSCHYG00000005987 ##22	HERC1 (ENSCHYG00000006046) #23	FBXL22 (ENSCHYG00000006365) #24	USP3 (ENSCHYG00000006402) #25	ENSCHYG00000006718	CA12 (ENSCHYG00000006765) #26	ENSCHYG00000006915	APH1B (ENSCHYG00000006935) #27	RAB8B (ENSCHYG00000006985) #28	ENSCHYG00000007049	ENSCHYG00000007078 #29	LACTB (ENSCHYG00000007150) #30	TPM1 (ENSCHYG00000007247) #31	TLN2 (ENSCHYG00000007530) #33	ENSCHYG00000007706	ENSCHYG00000007733
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Dolphin	MODERN SPECIES	4060																DAPK2 (ENSTTRG00000011301) ##22
Camelidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Alpaca	MODERN SPECIES	113													CSNK1G1 (ENSVPAG00000004337) #17	SNX1 (ENSVPAG00000004335) #20	CIAO2A (ENSVPAG00000004334) #21	ENSVPAG00000004332 ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Primates	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT01010000222997	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a.m #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000153341.b.p.a.b.b.b.b.g.a	ENSGT00940000154699 #33	ENSGT00910000147045	ENSGT00940000163765.e.b	ENSGT00940000163765.e.a	ENSGT00950000183083.a.d.a
Pan	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Bonobo	MODERN SPECIES	6	ANKDD1A (ENSPPAG00000035127) #8	PLEKHO2 (ENSPPAG00000021793) #9	PIF1 (ENSPPAG00000026794) #10	RBPMS2 (ENSPPAG00000024456) #11	OAZ2 (ENSPPAG00000034182) #12	ENSPPAG00000036324	ZNF609 (ENSPPAG00000040240) #14	TRIP4 (ENSPPAG00000017953) #15	PCLAF (ENSPPAG00000022409) #16	ENSPPAG00000040513	CSNK1G1 (ENSPPAG00000036515) #17	PPIB (ENSPPAG00000033464) #18	SNX22 (ENSPPAG00000033060) #19	SNX1 (ENSPPAG00000032668) #20	CIAO2A (ENSPPAG00000026013) #21	DAPK2 (ENSPPAG00000036415) ##22	HERC1 (ENSPPAG00000027734) #23	ENSPPAG00000043136 #24	USP3 (ENSPPAG00000040233) #25	CA12 (ENSPPAG00000043661) #26	APH1B (ENSPPAG00000013129) #27	RAB8B (ENSPPAG00000037656) #28	ENSPPAG00000027359 #29	LACTB (ENSPPAG00000032543) #30	TPM1 (ENSPPAG00000004536) #31	ENSPPAG00000032491	TLN2 (ENSPPAG00000035497) #33	ENSPPAG00000041336	ENSPPAG00000002371	VPS13C (ENSPPAG00000029152)	RORA (ENSPPAG00000038168)
Human	MODERN SPECIES	6	SPG21 (ENSG00000090487) #7	ANKDD1A (ENSG00000166839) #8	ENSG00000249240	PLEKHO2 (ENSG00000241839) #9	PIF1 (ENSG00000140451) #10	RBPMS2 (ENSG00000166831) #11	OAZ2 (ENSG00000180304) #12	ZNF609 (ENSG00000180357) #14	TRIP4 (ENSG00000103671) #15	PCLAF (ENSG00000166803) #16	CSNK1G1 (ENSG00000169118) #17	PPIB (ENSG00000166794) #18	SNX22 (ENSG00000157734) #19	SNX1 (ENSG00000028528) #20	CIAO2A (ENSG00000166797) #21	DAPK2 (ENSG00000035664) ##22	HERC1 (ENSG00000103657) #23	FBXL22 (ENSG00000197361) #24	USP3 (ENSG00000140455) #25	CA12 (ENSG00000074410) #26	APH1B (ENSG00000138613) #27	RAB8B (ENSG00000166128) #28	RPS27L (ENSG00000185088)	LACTB (ENSG00000103642) #30	TPM1 (ENSG00000140416) #31	TLN2 (ENSG00000171914) #33	C2CD4B (ENSG00000205502)	C2CD4A (ENSG00000198535)	VPS13C (ENSG00000129003)	RORA (ENSG00000069667)	ICE2 (ENSG00000128915)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153424.a.a.c.b ##22
Mas night monkey	MODERN SPECIES	1045	PLEKHO2 (ENSANAG00000032112) #9	PIF1 (ENSANAG00000026396) #10	RBPMS2 (ENSANAG00000014652) #11	OAZ2 (ENSANAG00000032482) #12	ZNF609 (ENSANAG00000036036) #14	ENSANAG00000020189	TRIP4 (ENSANAG00000027612) #15	PCLAF (ENSANAG00000032895) #16	ENSANAG00000020004	CSNK1G1 (ENSANAG00000034685) #17	ENSANAG00000038250	PPIB (ENSANAG00000038282) #18	SNX22 (ENSANAG00000031598) #19	SNX1 (ENSANAG00000028586) #20	CIAO2A (ENSANAG00000030216) #21	DAPK2 (ENSANAG00000025796) ##22	HERC1 (ENSANAG00000034456) #23	FBXL22 (ENSANAG00000018462) #24	ENSANAG00000019672	USP3 (ENSANAG00000038125) #25	CA12 (ENSANAG00000031578) #26	APH1B (ENSANAG00000024233) #27	ENSANAG00000019426	RAB8B (ENSANAG00000014540) #28	ENSANAG00000020165	ENSANAG00000028244 #29	LACTB (ENSANAG00000033008) #30	ENSANAG00000031826	TPM1 (ENSANAG00000030021) #31	TLN2 (ENSANAG00000038172) #33	ENSANAG00000030627
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00940000163765	ENSGT00950000183083.a.d.a
Tree shrew	MODERN SPECIES	1971																DAPK2 (ENSTBEG00000006994) ##22	HERC1 (ENSTBEG00000003293) #23	USP3 (ENSTBEG00000002547) #25
Glires	ANCESTRAL SPECIES	15	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00940000163765	ENSGT00950000183083.a.d.a
Rodentia	ANCESTRAL SPECIES	3	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00940000163765	ENSGT00950000183083.a.d.a
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765.h	ENSGT00940000163765.g	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086.j #11	ENSGT00940000157725 #12	ENSGT00860000136093 #13	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252.o #16	ENSGT00960000190216	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00900000143730	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765.h	ENSGT00940000163765.g	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Alpin marmot	MODERN SPECIES	7	ANKDD1A (ENSMMMG00000007304) #8	PLEKHO2 (ENSMMMG00000007337) #9	PIF1 (ENSMMMG00000007343) #10	ENSMMMG00000007389 #11	OAZ2 (ENSMMMG00000007403) #12	ENSMMMG00000007419 #13	ZNF609 (ENSMMMG00000007450) #14	TRIP4 (ENSMMMG00000007457) #15	ENSMMMG00000007518 #16	ENSMMMG00000007521	CSNK1G1 (ENSMMMG00000007575) #17	PPIB (ENSMMMG00000008986) #18	SNX22 (ENSMMMG00000008995) #19	SNX1 (ENSMMMG00000009009) #20	CIAO2A (ENSMMMG00000009021) #21	DAPK2 (ENSMMMG00000009028) ##22	HERC1 (ENSMMMG00000009068) #23	ENSMMMG00000009185 #24	ENSMMMG00000009191	USP3 (ENSMMMG00000009199) #25	CA12 (ENSMMMG00000009446) #26	APH1B (ENSMMMG00000009477) #27	RAB8B (ENSMMMG00000009506) #28	RPS27L (ENSMMMG00000009532)	TPM1 (ENSMMMG00000009577) #31	TLN2 (ENSMMMG00000010746) #33	ENSMMMG00000011016	ENSMMMG00000011024	ENSMMMG00000011035	VPS13C (ENSMMMG00000011042)	RORA (ENSMMMG00000011194)
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000017828	ENSGT00390000007857.w #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086.j #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252.o #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765.h	ENSGT00940000163765.g	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Arctic ground squirrel	MODERN SPECIES	33	ANKDD1A (ENSUPAG00010000557) #8	ENSUPAG00010000549	PLEKHO2 (ENSUPAG00010000532) #9	PIF1 (ENSUPAG00010000479) #10	ENSUPAG00010000455 #11	OAZ2 (ENSUPAG00010000430) #12	ZNF609 (ENSUPAG00010000413) #14	TRIP4 (ENSUPAG00010000337) #15	ENSUPAG00010000325	PCLAF (ENSUPAG00010000314) #16	CSNK1G1 (ENSUPAG00010000036) #17	PPIB (ENSUPAG00010020340) #18	SNX22 (ENSUPAG00010020334) #19	SNX1 (ENSUPAG00010020313) #20	CIAO2A (ENSUPAG00010020303) #21	DAPK2 (ENSUPAG00010020287) ##22	HERC1 (ENSUPAG00010020206) #23	FBXL22 (ENSUPAG00010020202) #24	USP3 (ENSUPAG00010020157) #25	CA12 (ENSUPAG00010020142) #26	APH1B (ENSUPAG00010020133) #27	RAB8B (ENSUPAG00010020124) #28	RPS27L (ENSUPAG00010020117)	LACTB (ENSUPAG00010020113) #30	TPM1 (ENSUPAG00010020041) #31	TLN2 (ENSUPAG00010019892) #33	ENSUPAG00010019882	ENSUPAG00010019880	VPS13C (ENSUPAG00010019706)	RORA (ENSUPAG00010019675)	ICE2 (ENSUPAG00010019658)
Squirrel	MODERN SPECIES	71	MTFMT (ENSSTOG00000020944)	ENSSTOG00000010101 #7	ANKDD1A (ENSSTOG00000010088) #8	PLEKHO2 (ENSSTOG00000020393) #9	PIF1 (ENSSTOG00000020621) #10	RBPMS2 (ENSSTOG00000010055) #11	OAZ2 (ENSSTOG00000026782) #12	ZNF609 (ENSSTOG00000028919) #14	TRIP4 (ENSSTOG00000014228) #15	ENSSTOG00000019643 #16	CSNK1G1 (ENSSTOG00000007485) #17	PPIB (ENSSTOG00000005354) #18	SNX22 (ENSSTOG00000026558) #19	SNX1 (ENSSTOG00000005324) #20	CIAO2A (ENSSTOG00000024438) #21	DAPK2 (ENSSTOG00000016080) ##22	HERC1 (ENSSTOG00000016063) #23	FBXL22 (ENSSTOG00000016061) #24	USP3 (ENSSTOG00000016055) #25	CA12 (ENSSTOG00000016051) #26	APH1B (ENSSTOG00000016049) #27	RAB8B (ENSSTOG00000016046) #28	RPS27L (ENSSTOG00000014532)	LACTB (ENSSTOG00000009971) #30	TPM1 (ENSSTOG00000009955) #31	TLN2 (ENSSTOG00000014824) #33	ENSSTOG00000003290	VPS13C (ENSSTOG00000003166)	RORA (ENSSTOG00000012400)	ENSSTOG00000032826	ENSSTOG00000023376
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000157312.g	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00900000143658	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00950000183014.f.b.a.b	ENSGT00940000157312.g	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000163765	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.i.a
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00950000183014.f.b.a.b	ENSGT00940000157312.g	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.i.a	ENSGT00940000160522
Long-tailed chinchilla	MODERN SPECIES	157	ENSCLAG00000012065	ANKDD1A (ENSCLAG00000007792) #8	PLEKHO2 (ENSCLAG00000008540) #9	PIF1 (ENSCLAG00000011808) #10	RBPMS2 (ENSCLAG00000016082) #11	OAZ2 (ENSCLAG00000014124) #12	ZNF609 (ENSCLAG00000006038) #14	TRIP4 (ENSCLAG00000006872) #15	PCLAF (ENSCLAG00000006954) #16	CSNK1G1 (ENSCLAG00000008023) #17	GNG5B (ENSCLAG00000017711)	PPIB (ENSCLAG00000011151) #18	SNX22 (ENSCLAG00000008526) #19	SNX1 (ENSCLAG00000008927) #20	CIAO2A (ENSCLAG00000012173) #21	DAPK2 (ENSCLAG00000013163) ##22	HERC1 (ENSCLAG00000016354) #23	FBXL22 (ENSCLAG00000014965) #24	USP3 (ENSCLAG00000012461) #25	CA12 (ENSCLAG00000009814) #26	APH1B (ENSCLAG00000014885) #27	RAB8B (ENSCLAG00000010690) #28	RPS27L (ENSCLAG00000010811)	LACTB (ENSCLAG00000007519) #30	TPM1 (ENSCLAG00000008921) #31	TLN2 (ENSCLAG00000009840) #33	ENSCLAG00000016591	VPS13C (ENSCLAG00000006472)	RORA (ENSCLAG00000012113)	ENSCLAG00000012071	ENSCLAG00000008269
Degu	MODERN SPECIES	67	ACAD9 (ENSODEG00000016388)	ANKDD1A (ENSODEG00000016476) #8	PLEKHO2 (ENSODEG00000016749) #9	PIF1 (ENSODEG00000016408) #10	RBPMS2 (ENSODEG00000016172) #11	Oaz2 (ENSODEG00000016846) #12	ZNF609 (ENSODEG00000016415) #14	TRIP4 (ENSODEG00000016494) #15	ENSODEG00000016410	PCLAF (ENSODEG00000016992) #16	CSNK1G1 (ENSODEG00000016448) #17	PPIB (ENSODEG00000016713) #18	SNX22 (ENSODEG00000016526) #19	SNX1 (ENSODEG00000016535) #20	CIAO2A (ENSODEG00000017473) #21	DAPK2 (ENSODEG00000016756) ##22	HERC1 (ENSODEG00000016719) #23	FBXL22 (ENSODEG00000016765) #24	USP3 (ENSODEG00000017024) #25	CA12 (ENSODEG00000016537) #26	APH1B (ENSODEG00000016784) #27	RAB8B (ENSODEG00000016571) #28	ENSODEG00000016936	LACTB (ENSODEG00000016877) #30	TPM1 (ENSODEG00000017042) #31	TLN2 (ENSODEG00000016531) #33	ENSODEG00000016956	ENSODEG00000020499	VPS13C (ENSODEG00000017192)	RORA (ENSODEG00000016932)	ICE2 (ENSODEG00000017266)
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.j
Kangaroo rat	MODERN SPECIES	330	Mtfmt (ENSDORG00000004684)	Spg21 (ENSDORG00000003605) #7	Ankdd1a (ENSDORG00000008259) #8	Plekho2 (ENSDORG00000010180) #9	Pif1 (ENSDORG00000010176) #10	ENSDORG00000004025 #11	Oaz2 (ENSDORG00000013528) #12	Zfp609 (ENSDORG00000013522) #14	Trip4 (ENSDORG00000014914) #15	Pclaf (ENSDORG00000014912) #16	Csnk1g1 (ENSDORG00000011978) #17	Ppib (ENSDORG00000003536) #18	Snx22 (ENSDORG00000003534) #19	Snx1 (ENSDORG00000003256) #20	Ciao2a (ENSDORG00000026286) #21	ENSDORG00000012436 ##22	Herc1 (ENSDORG00000016189) #23	Fbxl22 (ENSDORG00000027356) #24	Usp3 (ENSDORG00000016188) #25	Car12 (ENSDORG00000012363) #26	ENSDORG00000012361 #27	Rab8b (ENSDORG00000023189) #28	ENSDORG00000007575	Lactb (ENSDORG00000028713) #30	Tpm1 (ENSDORG00000002438) #31	Tln2 (ENSDORG00000001561) #33	Vps13c (ENSDORG00000005969)	Rora (ENSDORG00000001826)	ENSDORG00000001443	Anxa2 (ENSDORG00000015726)	ENSDORG00000024092
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.j
Lesser Egyptian jerboa	MODERN SPECIES	92	ENSJJAG00000013627 #7	Ankdd1a (ENSJJAG00000014309) #8	Plekho2 (ENSJJAG00000014316) #9	Pif1 (ENSJJAG00000017111) #10	Rbpms2 (ENSJJAG00000001664) #11	Oaz2 (ENSJJAG00000024365) #12	Zfp609 (ENSJJAG00000019246) #14	Trip4 (ENSJJAG00000001629) #15	Pclaf (ENSJJAG00000008107) #16	ENSJJAG00000017750	Csnk1g1 (ENSJJAG00000012391) #17	Ppib (ENSJJAG00000022318) #18	Snx22 (ENSJJAG00000013816) #19	Snx1 (ENSJJAG00000004729) #20	ENSJJAG00000014166 #21	Dapk2 (ENSJJAG00000017017) ##22	Herc1 (ENSJJAG00000011445) #23	Fbxl22 (ENSJJAG00000005076) #24	Usp3 (ENSJJAG00000023661) #25	Car12 (ENSJJAG00000013683) #26	ENSJJAG00000018987 #27	Rab8b (ENSJJAG00000016477) #28	ENSJJAG00000021616	Lactb (ENSJJAG00000009980) #30	Tpm1 (ENSJJAG00000022370) #31	Tln2 (ENSJJAG00000016766) #33	Vps13c (ENSJJAG00000012718)	Rora (ENSJJAG00000018794)	ENSJJAG00000019838	Anxa2 (ENSJJAG00000008193)	Foxb1 (ENSJJAG00000010310)
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257.j
Upper Galilee mountains blind mole rat	MODERN SPECIES	1653																ENSNGAG00000010326 ##22	Herc1 (ENSNGAG00000023224) #23	Fbxl22 (ENSNGAG00000005102) #24	Usp3 (ENSNGAG00000016400) #25	Car12 (ENSNGAG00000023433) #26	ENSNGAG00000010466 #27	Rab8b (ENSNGAG00000013464) #28	Rps27l (ENSNGAG00000020141)	Lactb (ENSNGAG00000021792) #30	Tpm1 (ENSNGAG00000019970) #31
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Chinese hamster chok1gshd	MODERN SPECIES	284	Mtfmt (ENSCGRG00001010938)	Spg21 (ENSCGRG00001022317) #7	Ankdd1a (ENSCGRG00001014311) #8	Plekho2 (ENSCGRG00001003734) #9	Pif1 (ENSCGRG00001022422) #10	Rbpms2 (ENSCGRG00001014627) #11	Oaz2 (ENSCGRG00001010487) #12	Zfp609 (ENSCGRG00001021193) #14	Trip4 (ENSCGRG00001021158) #15	Pclaf (ENSCGRG00001015611) #16	ENSCGRG00001006652 #17	Ppib (ENSCGRG00001018105) #18	Snx22 (ENSCGRG00001015603) #19	Snx1 (ENSCGRG00001019877) #20	ENSCGRG00001015874 #21	Dapk2 (ENSCGRG00001014149) ##22	Herc1 (ENSCGRG00001025001) #23	Fbxl22 (ENSCGRG00001012979) #24	Usp3 (ENSCGRG00001012692) #25	Car12 (ENSCGRG00001005768) #26	ENSCGRG00001019290 #27	ENSCGRG00001018389 #27	Rab8b (ENSCGRG00001023679) #28	Rps27l (ENSCGRG00001020737)	Lactb (ENSCGRG00001017416) #30	Tpm1 (ENSCGRG00001021042) #31	Tln2 (ENSCGRG00001010300) #33	C2cd4b (ENSCGRG00001010530)	C2cd4a (ENSCGRG00001012662)	Vps13c (ENSCGRG00001011049)	Rora (ENSCGRG00001017588)
Golden Hamster	MODERN SPECIES	672	Slc51b (ENSMAUG00000016209)	Mtfmt (ENSMAUG00000019476)	Spg21 (ENSMAUG00000011488) #7	Ankdd1a (ENSMAUG00000009278) #8	Plekho2 (ENSMAUG00000018647) #9	Pif1 (ENSMAUG00000014194) #10	Rbpms2 (ENSMAUG00000019407) #11	Oaz2 (ENSMAUG00000013089) #12	Zfp609 (ENSMAUG00000014361) #14	Csnk1g1 (ENSMAUG00000020738) #17	Ppib (ENSMAUG00000016277) #18	Snx22 (ENSMAUG00000009971) #19	Snx1 (ENSMAUG00000017060) #20	ENSMAUG00000021107 #21	ENSMAUG00000009344	Dapk2 (ENSMAUG00000018956) ##22	Herc1 (ENSMAUG00000020600) #23	Fbxl22 (ENSMAUG00000000756) #24	Usp3 (ENSMAUG00000014840) #25	Car12 (ENSMAUG00000010842) #26	ENSMAUG00000020850 #27	Rab8b (ENSMAUG00000014611) #28	Rps27l (ENSMAUG00000014151)	Lactb (ENSMAUG00000000691) #30	Tpm1 (ENSMAUG00000015731) #31	Tln2 (ENSMAUG00000011104) #33	C2cd4b (ENSMAUG00000011284)	C2cd4a (ENSMAUG00000001316)	Vps13c (ENSMAUG00000013205)	Rora (ENSMAUG00000018718)	Ice2 (ENSMAUG00000013954)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00960000190216	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Northern American deer mouse	MODERN SPECIES	20	Spg21 (ENSPEMG00000021006) #7	Ankdd1a (ENSPEMG00000020958) #8	Plekho2 (ENSPEMG00000020353) #9	Pif1 (ENSPEMG00000022817) #10	Rbpms2 (ENSPEMG00000030862) #11	Oaz2 (ENSPEMG00000022920) #12	Zfp609 (ENSPEMG00000020682) #14	Trip4 (ENSPEMG00000012446) #15	ENSPEMG00000008026 #16	ENSPEMG00000027501	Csnk1g1 (ENSPEMG00000021693) #17	Ppib (ENSPEMG00000020752) #18	Snx22 (ENSPEMG00000020391) #19	Snx1 (ENSPEMG00000021765) #20	Ciao2a (ENSPEMG00000026146) #21	Dapk2 (ENSPEMG00000020347) ##22	Herc1 (ENSPEMG00000022291) #23	Fbxl22 (ENSPEMG00000026865) #24	Usp3 (ENSPEMG00000022492) #25	Car12 (ENSPEMG00000020817) #26	ENSPEMG00000017166 #27	ENSPEMG00000020385 #27	Rab8b (ENSPEMG00000022284) #28	ENSPEMG00000022063	Lactb (ENSPEMG00000021795) #30	Gm6525 (ENSPEMG00000024538)	Tpm1 (ENSPEMG00000020869) #31	ENSPEMG00000025721	ENSPEMG00000024299	Tln2 (ENSPEMG00000021042) #33	ENSPEMG00000031152
Prairie vole	MODERN SPECIES	13	ENSMOCG00000008827	Ankdd1a (ENSMOCG00000010903) #8	Plekho2 (ENSMOCG00000004192) #9	Pif1 (ENSMOCG00000002650) #10	Rbpms2 (ENSMOCG00000021603) #11	Oaz2 (ENSMOCG00000022084) #12	Zfp609 (ENSMOCG00000018401) #14	Trip4 (ENSMOCG00000012669) #15	ENSMOCG00000007532 #16	ENSMOCG00000002331	Csnk1g1 (ENSMOCG00000002807) #17	Ppib (ENSMOCG00000010333) #18	Snx22 (ENSMOCG00000021921) #19	Snx1 (ENSMOCG00000001495) #20	Ciao2a (ENSMOCG00000018290) #21	Dapk2 (ENSMOCG00000014779) ##22	Herc1 (ENSMOCG00000019096) #23	Fbxl22 (ENSMOCG00000015109) #24	Usp3 (ENSMOCG00000016014) #25	Car12 (ENSMOCG00000011104) #26	ENSMOCG00000006287 #27	ENSMOCG00000012775 #28	ENSMOCG00000002090	Rps27l (ENSMOCG00000000754)	Lactb (ENSMOCG00000022545) #30	Tpm1 (ENSMOCG00000021399) #31	ENSMOCG00000001381 #33	ENSMOCG00000012230 #33	ENSMOCG00000002742	C2cd4a (ENSMOCG00000002214)	Vps13c (ENSMOCG00000000853)
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883
Mus	ANCESTRAL SPECIES	4	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.u.a #27	ENSGT00390000002049.c.b.u.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Shrew mouse	MODERN SPECIES	1	Slc51b (MGP_PahariEiJ_G0015226)	Mtfmt (MGP_PahariEiJ_G0015227)	Spg21 (MGP_PahariEiJ_G0015228) #7	Ankdd1a (MGP_PahariEiJ_G0015229) #8	Plekho2 (MGP_PahariEiJ_G0015230) #9	Pif1 (MGP_PahariEiJ_G0015231) #10	Rbpms2 (MGP_PahariEiJ_G0015232) #11	MGP_PahariEiJ_G0015233 #12	Zfp609 (MGP_PahariEiJ_G0015234) #14	Trip4 (MGP_PahariEiJ_G0015235) #15	Csnk1g1 (MGP_PahariEiJ_G0015237) #17	Ppib (MGP_PahariEiJ_G0015238) #18	Snx22 (MGP_PahariEiJ_G0015239) #19	Snx1 (MGP_PahariEiJ_G0015240) #20	Ciao2a (MGP_PahariEiJ_G0015241) #21	MGP_PahariEiJ_G0015242 ##22	Herc1 (MGP_PahariEiJ_G0015243) #23	Fbxl22 (MGP_PahariEiJ_G0015244) #24	Usp3 (MGP_PahariEiJ_G0015245) #25	Car12 (MGP_PahariEiJ_G0015246) #26	Aph1b (MGP_PahariEiJ_G0015247) #27	MGP_PahariEiJ_G0015248 #27	Rab8b (MGP_PahariEiJ_G0015249) #28	MGP_PahariEiJ_G0015250	Lactb (MGP_PahariEiJ_G0015251) #30	MGP_PahariEiJ_G0015252 #31	Tln2 (MGP_PahariEiJ_G0015253) #33	C2cd4b (MGP_PahariEiJ_G0015254)	C2cd4a (MGP_PahariEiJ_G0015255)	Vps13c (MGP_PahariEiJ_G0015256)	Rora (MGP_PahariEiJ_G0015257)
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.u.a #27	ENSGT00390000002049.c.b.u.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Ryukyu mouse	MODERN SPECIES	18	Mtfmt (MGP_CAROLIEiJ_G0032362)	Spg21 (MGP_CAROLIEiJ_G0032363) #7	Ankdd1a (MGP_CAROLIEiJ_G0032364) #8	Plekho2 (MGP_CAROLIEiJ_G0032365) #9	Pif1 (MGP_CAROLIEiJ_G0032366) #10	Rbpms2 (MGP_CAROLIEiJ_G0032367) #11	MGP_CAROLIEiJ_G0032368 #12	Zfp609 (MGP_CAROLIEiJ_G0032369) #14	Trip4 (MGP_CAROLIEiJ_G0032370) #15	Pclaf (MGP_CAROLIEiJ_G0032371) #16	Csnk1g1 (MGP_CAROLIEiJ_G0032372) #17	Ppib (MGP_CAROLIEiJ_G0032373) #18	Snx22 (MGP_CAROLIEiJ_G0032374) #19	Snx1 (MGP_CAROLIEiJ_G0032375) #20	Ciao2a (MGP_CAROLIEiJ_G0032376) #21	MGP_CAROLIEiJ_G0032377 ##22	Herc1 (MGP_CAROLIEiJ_G0032378) #23	Fbxl22 (MGP_CAROLIEiJ_G0032379) #24	Usp3 (MGP_CAROLIEiJ_G0032380) #25	Car12 (MGP_CAROLIEiJ_G0032381) #26	Aph1b (MGP_CAROLIEiJ_G0032382) #27	MGP_CAROLIEiJ_G0032383	MGP_CAROLIEiJ_G0032384 #27	Rab8b (MGP_CAROLIEiJ_G0032385) #28	Lactb (MGP_CAROLIEiJ_G0032387) #30	Tpm1 (MGP_CAROLIEiJ_G0032388) #31	Tln2 (MGP_CAROLIEiJ_G0032389) #33	C2cd4b (MGP_CAROLIEiJ_G0032390)	C2cd4a (MGP_CAROLIEiJ_G0032391)	Vps13c (MGP_CAROLIEiJ_G0032392)	Rora (MGP_CAROLIEiJ_G0032393)
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252.m #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.d #22	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.u.a #27	ENSGT00390000002049.c.b.u.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000017828.s	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252.m #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b.u.a #27	ENSGT00390000002049.c.b.u.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.o	ENSGT00940000162206.p	ENSGT00950000183083.a.d.a	ENSGT00940000157387
spretus	MODERN SPECIES	18	Mtfmt (MGP_SPRETEiJ_G0033501)	Spg21 (MGP_SPRETEiJ_G0033502) #7	Ankdd1a (MGP_SPRETEiJ_G0033503) #8	Plekho2 (MGP_SPRETEiJ_G0033504) #9	Pif1 (MGP_SPRETEiJ_G0033505) #10	Rbpms2 (MGP_SPRETEiJ_G0033506) #11	MGP_SPRETEiJ_G0033507 #12	Zfp609 (MGP_SPRETEiJ_G0033508) #14	Trip4 (MGP_SPRETEiJ_G0033509) #15	Pclaf (MGP_SPRETEiJ_G0033510) #16	Csnk1g1 (MGP_SPRETEiJ_G0033511) #17	Ppib (MGP_SPRETEiJ_G0033512) #18	Snx22 (MGP_SPRETEiJ_G0033513) #19	Snx1 (MGP_SPRETEiJ_G0033514) #20	Ciao2a (MGP_SPRETEiJ_G0033515) #21	MGP_SPRETEiJ_G0033516 ##22	Herc1 (MGP_SPRETEiJ_G0033517) #23	Fbxl22 (MGP_SPRETEiJ_G0033518) #24	Usp3 (MGP_SPRETEiJ_G0033519) #25	Car12 (MGP_SPRETEiJ_G0033520) #26	Aph1b (MGP_SPRETEiJ_G0033521) #27	Aph1c (MGP_SPRETEiJ_G0033522) #27	Rab8b (MGP_SPRETEiJ_G0033523) #28	Rps27l (MGP_SPRETEiJ_G0033524)	Lactb (MGP_SPRETEiJ_G0033525) #30	Tpm1 (MGP_SPRETEiJ_G0033526) #31	Tln2 (MGP_SPRETEiJ_G0033527) #33	MGP_SPRETEiJ_G0033528	C2cd4a (MGP_SPRETEiJ_G0033529)	Vps13c (MGP_SPRETEiJ_G0033530)	Rora (MGP_SPRETEiJ_G0033531)
Steppe mouse	MODERN SPECIES	3341																ENSMSIG00000022049 ##22	Herc1 (ENSMSIG00000022075) #23	Fbxl22 (ENSMSIG00000022189) #24	Usp3 (ENSMSIG00000022205) #25	Car12 (ENSMSIG00000022296) #26	ENSMSIG00000022339 #27	ENSMSIG00000022353	Aph1c (ENSMSIG00000022355) #27	Rab8b (ENSMSIG00000022369) #28	ENSMSIG00000022374	Lactb (ENSMSIG00000022397) #30	Tpm1 (ENSMSIG00000022438) #31	ENSMSIG00000023676	Tln2 (ENSMSIG00000023708) #33	C2cd4b (ENSMSIG00000023890)	C2cd4a (ENSMSIG00000023906)
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Xenarthra	ANCESTRAL SPECIES	197				ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Armadillo	MODERN SPECIES	2336		PLEKHO2 (ENSDNOG00000034684) #9	PIF1 (ENSDNOG00000003780) #10	RBPMS2 (ENSDNOG00000048895) #11	OAZ2 (ENSDNOG00000037947) #12	ZNF609 (ENSDNOG00000040739) #14	ENSDNOG00000030638	ENSDNOG00000038952	TRIP4 (ENSDNOG00000008654) #15	PCLAF (ENSDNOG00000041418) #16	ENSDNOG00000018857 #17	ENSDNOG00000031206 #18	SNX22 (ENSDNOG00000017270) #19	SNX1 (ENSDNOG00000019013) #20	CIAO2A (ENSDNOG00000025148) #21	DAPK2 (ENSDNOG00000036558) ##22	ENSDNOG00000015233	HERC1 (ENSDNOG00000005556) #23	FBXL22 (ENSDNOG00000005549) #24	USP3 (ENSDNOG00000005529) #25	CA12 (ENSDNOG00000043949) #26
Sloth	MODERN SPECIES	2067																DAPK2 (ENSCHOG00000001693) ##22
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Tenrec	MODERN SPECIES	1989																DAPK2 (ENSETEG00000001356) ##22
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00390000017828	ENSGT00390000007857 #7	ENSGT00940000154170.B #8	ENSGT00530000063760.a #9	ENSGT00530000063561 #10	ENSGT00940000158086 #11	ENSGT00940000157725 #12	ENSGT00390000008748.b #14	ENSGT00390000005300 #15	ENSGT00510000048252 #16	ENSGT00940000155628 #17	ENSGT00940000158007 #18	ENSGT00390000001280.a #19	ENSGT00940000155889 #20	ENSGT00390000017697.a #21	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Hyrax	MODERN SPECIES	1901																DAPK2 (ENSPCAG00000002239) ##22
Elephant	MODERN SPECIES	466	MTFMT (ENSLAFG00000006985)	SPG21 (ENSLAFG00000002639) #7	ANKDD1A (ENSLAFG00000002637) #8	PLEKHO2 (ENSLAFG00000001775) #9	PIF1 (ENSLAFG00000023289) #10	RBPMS2 (ENSLAFG00000018725) #11	OAZ2 (ENSLAFG00000001466) #12	ZNF609 (ENSLAFG00000001465) #14	TRIP4 (ENSLAFG00000017612) #15	PCLAF (ENSLAFG00000017606) #16	CSNK1G1 (ENSLAFG00000018699) #17	PPIB (ENSLAFG00000018698) #18	SNX22 (ENSLAFG00000018696) #19	SNX1 (ENSLAFG00000018693) #20	CIAO2A (ENSLAFG00000011114) #21	DAPK2 (ENSLAFG00000000338) ##22	HERC1 (ENSLAFG00000004068) #23	FBXL22 (ENSLAFG00000031273) #24	USP3 (ENSLAFG00000004065) #25	CA12 (ENSLAFG00000001773) #26	APH1B (ENSLAFG00000001772) #27	RAB8B (ENSLAFG00000001771) #28	RPS27L (ENSLAFG00000015475)	LACTB (ENSLAFG00000015480) #30	TPM1 (ENSLAFG00000004960) #31	TLN2 (ENSLAFG00000000520) #33	ENSLAFG00000013413	ENSLAFG00000027908	ENSLAFG00000012810	RORA (ENSLAFG00000000577)	ICE2 (ENSLAFG00000017637)
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT01030000234542.b.a.a.b.a.b ##31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387
Lepidosauria	ANCESTRAL SPECIES	46	ENSGT00940000154996.a.b	ENSGT00940000162054	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257	ENSGT00940000160522
Toxicofera	ANCESTRAL SPECIES	15	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257	ENSGT00940000160522	ENSGT00940000158531
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000175332	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573.k	ENSGT00940000157691	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699.c #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257	ENSGT00940000160522	ENSGT00940000158531
Elapidae_a	ANCESTRAL SPECIES	17	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573.k	ENSGT00940000156573.l	ENSGT00940000157691	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699.d #33	ENSGT00940000154699.c #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257	ENSGT00940000160522
Blue-lipped sea krait	MODERN SPECIES	3249															TBC1D2B (ENSLLTG00000017723)	DAPK2 (ENSLLTG00000017721) ##22	HERC1 (ENSLLTG00000017665) #23	FBXL22 (ENSLLTG00000017659) #24	USP3 (ENSLLTG00000017658) #25	CA12 (ENSLLTG00000017655) #26	RAB8B (ENSLLTG00000017652) #28	LACTB (ENSLLTG00000017648) #30	TPM1 (ENSLLTG00000017646) #31
Acanthophiinae	ANCESTRAL SPECIES	17	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573.k	ENSGT00940000156573.l	ENSGT00940000157691	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699.d #33	ENSGT00940000154699.c.a #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT01010000223714	ENSGT00940000154257	ENSGT00940000160522
Mainland tiger snake	MODERN SPECIES	168	ENSNSUG00000013449	ENSNSUG00000013450	CGNL1 (ENSNSUG00000013451)	MYZAP (ENSNSUG00000013455)	ALDH1A2 (ENSNSUG00000013568)	AQP9 (ENSNSUG00000014539)	LIPC (ENSNSUG00000014540)	ADAM10 (ENSNSUG00000014541)	MINDY2 (ENSNSUG00000014542)	ENSNSUG00000014543	ENSNSUG00000014544	RNF111 (ENSNSUG00000014545)	MYO1E (ENSNSUG00000014553)	FAM81A (ENSNSUG00000015051)	TBC1D2B (ENSNSUG00000015053)	DAPK2 (ENSNSUG00000015054) ##22	HERC1 (ENSNSUG00000015055) #23	FBXL22 (ENSNSUG00000015209) #24	USP3 (ENSNSUG00000015210) #25	CA12 (ENSNSUG00000016428) #26	RAB8B (ENSNSUG00000016429) #28	LACTB (ENSNSUG00000016430) #30	TPM1 (ENSNSUG00000016431) #31	TLN2 (ENSNSUG00000016432) #33	ENSNSUG00000016468	VPS13C (ENSNSUG00000016476)	RORA (ENSNSUG00000017632)	ENSNSUG00000017636	ANXA2 (ENSNSUG00000017637)	FOXB1 (ENSNSUG00000017638)	BNIP2 (ENSNSUG00000017639)
Eastern brown snake	MODERN SPECIES	44	MNS1 (ENSPTXG00000002834)	ZNF280D (ENSPTXG00000002832)	ENSPTXG00000002830	ENSPTXG00000017973	CGNL1 (ENSPTXG00000017971)	MYZAP (ENSPTXG00000017967)	ALDH1A2 (ENSPTXG00000016295)	LIPC (ENSPTXG00000016286)	ADAM10 (ENSPTXG00000016285)	MINDY2 (ENSPTXG00000016284)	SLTM (ENSPTXG00000016283)	RNF111 (ENSPTXG00000016282)	MYO1E (ENSPTXG00000015740)	FAM81A (ENSPTXG00000015726)	TBC1D2B (ENSPTXG00000015724)	DAPK2 (ENSPTXG00000015723) ##22	HERC1 (ENSPTXG00000013834) #23	FBXL22 (ENSPTXG00000013818) #24	USP3 (ENSPTXG00000012839) #25	CA12 (ENSPTXG00000012828) #26	RAB8B (ENSPTXG00000012827) #28	LACTB (ENSPTXG00000012825) #30	ENSPTXG00000012822 #33	ENSPTXG00000012821	VPS13C (ENSPTXG00000012802)	RORA (ENSPTXG00000012791)	ENSPTXG00000012789	BNIP2 (ENSPTXG00000012787)	ENSPTXG00000012786	GCNT3 (ENSPTXG00000012785)	OTUD7A (ENSPTXG00000012783)
Indian cobra	MODERN SPECIES	14	ZNF280D (ENSNNAG00000015092)	ENSNNAG00000015120	ENSNNAG00000015131	CGNL1 (ENSNNAG00000015168)	MYZAP (ENSNNAG00000015353)	ALDH1A2 (ENSNNAG00000015465)	AQP9 (ENSNNAG00000015484)	LIPC (ENSNNAG00000015496)	ADAM10 (ENSNNAG00000015510)	MINDY2 (ENSNNAG00000015542)	SLTM (ENSNNAG00000015551)	RNF111 (ENSNNAG00000015595)	FAM81A (ENSNNAG00000015620)	MYO1E (ENSNNAG00000015790)	TBC1D2B (ENSNNAG00000017352)	DAPK2 (ENSNNAG00000017373) ##22	HERC1 (ENSNNAG00000017461) #23	FBXL22 (ENSNNAG00000017821) #24	USP3 (ENSNNAG00000017843) #25	CA12 (ENSNNAG00000017885) #26	RAB8B (ENSNNAG00000017888) #28	LACTB (ENSNNAG00000017891) #30	TPM1 (ENSNNAG00000017894) #31	TLN2 (ENSNNAG00000017923) #33	ENSNNAG00000018234	VPS13C (ENSNNAG00000018404)	RORA (ENSNNAG00000018906)	ICE2 (ENSNNAG00000003778)	ANXA2 (ENSNNAG00000003810)	BNIP2 (ENSNNAG00000003933)	GTF2A2 (ENSNNAG00000004440)
Laterata	ANCESTRAL SPECIES	33	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000023461	ENSPMRG00000023457	ENSPMRG00000023456	AQP9 (ENSPMRG00000023453)	ENSPMRG00000023449	ENSPMRG00000023445	LIPC (ENSPMRG00000023441)	ADAM10 (ENSPMRG00000023435)	MINDY2 (ENSPMRG00000023430)	SLTM (ENSPMRG00000023425)	RNF111 (ENSPMRG00000023421)	CCNB2 (ENSPMRG00000023416)	MYO1E (ENSPMRG00000023361)	FAM81A (ENSPMRG00000023319)	TBC1D2B (ENSPMRG00000023313)	DAPK2 (ENSPMRG00000023290) ##22	HERC1 (ENSPMRG00000023186) #23	FBXL22 (ENSPMRG00000023165) #24	USP3 (ENSPMRG00000023033) #25	CA12 (ENSPMRG00000022998) #26	RAB8B (ENSPMRG00000022969) #28	RPS27L (ENSPMRG00000022964)	LACTB (ENSPMRG00000022956) #30	TPM1 (ENSPMRG00000022870) #31	TLN2 (ENSPMRG00000022537) #33	ENSPMRG00000022445	VPS13C (ENSPMRG00000021841)	RORA (ENSPMRG00000021742)	ICE2 (ENSPMRG00000021730)	ANXA2 (ENSPMRG00000021720)	FOXB1 (ENSPMRG00000021714)
tuatara	MODERN SPECIES	331	HMG20A (ENSSPUG00000014213)	LINGO1 (ENSSPUG00000014226)	CSPG4 (ENSSPUG00000014245)	SNX33 (ENSSPUG00000014317)	SNUPN (ENSSPUG00000014331)	PTPN9 (ENSSPUG00000014349)	SIN3A (ENSSPUG00000014472)	CRABP1 (ENSSPUG00000014788)	SKIC8 (ENSSPUG00000014807)	ENSSPUG00000014814	ENSSPUG00000014822	ACSBG1 (ENSSPUG00000014841)	IDH3A (ENSSPUG00000014874)	CIB2 (ENSSPUG00000014888)	TBC1D2B (ENSSPUG00000014911)	DAPK2 (ENSSPUG00000014936) ##22	HERC1 (ENSSPUG00000014972) #23	FBXL22 (ENSSPUG00000015067) #24	USP3 (ENSSPUG00000015076) #25	CA12 (ENSSPUG00000015156) #26	APH1B (ENSSPUG00000015282) #27	RAB8B (ENSSPUG00000015339) #28	RPS27L (ENSSPUG00000015351)	ENSSPUG00000015357 #30	TPM1 (ENSSPUG00000015433) #31
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00960000187698	ENSGT00940000157387
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.s	ENSGT00940000162206.t	ENSGT00950000183083.a.d.a	ENSGT00960000187698
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00950000183083.a.d.a.fb	ENSGT00960000187698	ENSGT00940000157387	ENSGT00390000006883
Emydidae	ANCESTRAL SPECIES	38	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000169460	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00950000183083.a.d.a.fb	ENSGT00960000187698	ENSGT00940000157387	ENSGT00390000006883
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	940	FBXO22 (ENSCPBG00000024262)	UBE2Q2 (ENSCPBG00000024260)	CHRNB4 (ENSCPBG00000024259)	CHRNA3 (ENSCPBG00000024258)	CHRNA5 (ENSCPBG00000024257)	PSMA4 (ENSCPBG00000024256)	IREB2 (ENSCPBG00000024247)	CRABP1 (ENSCPBG00000024246)	SKIC8 (ENSCPBG00000024244)	DNAJA4 (ENSCPBG00000024241)	ACSBG1 (ENSCPBG00000024238)	IDH3A (ENSCPBG00000024237)	CIB2 (ENSCPBG00000024236)	SH2D7 (ENSCPBG00000024234)	TBC1D2B (ENSCPBG00000024232)	ENSCPBG00000024230 ##22
painted turtle	MODERN SPECIES	1567																ENSCPBG00000004401 ##22
Three-toed box turtle	MODERN SPECIES	27	UBE2Q2 (ENSTMTG00000020828)	CHRNB4 (ENSTMTG00000020851)	CHRNA3 (ENSTMTG00000020866)	CHRNA5 (ENSTMTG00000020889)	PSMA4 (ENSTMTG00000020900)	HYKK (ENSTMTG00000020914)	IREB2 (ENSTMTG00000020922)	CRABP1 (ENSTMTG00000020935)	ENSTMTG00000020946	ENSTMTG00000020949	ACSBG1 (ENSTMTG00000020961)	IDH3A (ENSTMTG00000009869)	ENSTMTG00000009885	CIB2 (ENSTMTG00000009897)	TBC1D2B (ENSTMTG00000009907)	DAPK2 (ENSTMTG00000009934) ##22	HERC1 (ENSTMTG00000010023) #23	FBXL22 (ENSTMTG00000010173) #24	USP3 (ENSTMTG00000010197) #25	ENSTMTG00000010223	CA12 (ENSTMTG00000010244) #26	APH1B (ENSTMTG00000010353) #27	RAB8B (ENSTMTG00000010364) #28	RPS27L (ENSTMTG00000010399)	LACTB (ENSTMTG00000010420) #30	TPM1 (ENSTMTG00000010444) #31	TLN2 (ENSTMTG00000011634) #33	ENSTMTG00000021849	ENSTMTG00000021853	VPS13C (ENSTMTG00000021931)	ENSTMTG00000022173
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00390000002049.c.b #27	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206.s	ENSGT00940000162206.t	ENSGT00950000183083.a.d.a.fb	ENSGT00960000187698	ENSGT00940000157387
Goode s thornscrub tortoise	MODERN SPECIES	1	CHRNB4 (ENSGEVG00005009314)	CHRNA3 (ENSGEVG00005019394)	CHRNA5 (ENSGEVG00005019382)	PSMA4 (ENSGEVG00005019370)	HYKK (ENSGEVG00005019361)	IREB2 (ENSGEVG00005018642)	CRABP1 (ENSGEVG00005018434)	SKIC8 (ENSGEVG00005018418)	ENSGEVG00005018398	ENSGEVG00005018374	ENSGEVG00005018350	ENSGEVG00005018311	IDH3A (ENSGEVG00005018290)	CIB2 (ENSGEVG00005018271)	TBC1D2B (ENSGEVG00005018245)	DAPK2 (ENSGEVG00005018176) ##22	HERC1 (ENSGEVG00005018107) #23	FBXL22 (ENSGEVG00005018061) #24	USP3 (ENSGEVG00005018026) #25	CA12 (ENSGEVG00005017906) #26	APH1B (ENSGEVG00005017830) #27	RAB8B (ENSGEVG00005017807) #28	RPS27L (ENSGEVG00005017792)	LACTB (ENSGEVG00005017734) #30	TPM1 (ENSGEVG00005017686) #31	TLN2 (ENSGEVG00005017009) #33	ENSGEVG00005016846	ENSGEVG00005016829	VPS13C (ENSGEVG00005010110)	ENSGEVG00005009244	ICE2 (ENSGEVG00005009113)
Abingdon island giant tortoise	MODERN SPECIES	2407	UBE2Q2 (ENSCABG00000002400)	CHRNB4 (ENSCABG00000002373)	CHRNA3 (ENSCABG00000002369)	CHRNA5 (ENSCABG00000002366)	PSMA4 (ENSCABG00000002363)	HYKK (ENSCABG00000002361)	IREB2 (ENSCABG00000002355)	CRABP1 (ENSCABG00000002353)	SKIC8 (ENSCABG00000002348)	DNAJA4 (ENSCABG00000002319)	ENSCABG00000002311	ENSCABG00000002307	IDH3A (ENSCABG00000002305)	CIB2 (ENSCABG00000002303)	TBC1D2B (ENSCABG00000002301)	DAPK2 (ENSCABG00000002298) ##22
Chinese turtle	MODERN SPECIES	618								ENSPSIG00000010607	SKIC8 (ENSPSIG00000008819)	DNAJA4 (ENSPSIG00000009731)	ACSBG1 (ENSPSIG00000007639)	IDH3A (ENSPSIG00000017182)	CIB2 (ENSPSIG00000016804)	SH2D7 (ENSPSIG00000016598)	TBC1D2B (ENSPSIG00000016007)	DAPK2 (ENSPSIG00000015800) ##22	ENSPSIG00000015474 #23
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00960000191044	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00960000187698	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
Aves	ANCESTRAL SPECIES	14	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00960000187698	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257
African ostrich	MODERN SPECIES	834	FBXO22 (ENSSCUG00000015895)	UBE2Q2 (ENSSCUG00000015893)	CHRNB4 (ENSSCUG00000015892)	CHRNA3 (ENSSCUG00000015890)	CHRNA5 (ENSSCUG00000015888)	PSMA4 (ENSSCUG00000015885)	HYKK (ENSSCUG00000015882)	IREB2 (ENSSCUG00000015872)	CRABP1 (ENSSCUG00000015866)	SKIC8 (ENSSCUG00000015864)	DNAJA4 (ENSSCUG00000015862)	ACSBG1 (ENSSCUG00000015842)	IDH3A (ENSSCUG00000015810)	CIB2 (ENSSCUG00000015804)	TBC1D2B (ENSSCUG00000015795)	DAPK2 (ENSSCUG00000015789) ##22	HERC1 (ENSSCUG00000015727) #23	FBXL22 (ENSSCUG00000015679) #24	USP3 (ENSSCUG00000015643) #25	CA12 (ENSSCUG00000015627) #26	RAB8B (ENSSCUG00000015611) #28	ENSSCUG00000015608 #29	LACTB (ENSSCUG00000015607) #30	TPM1 (ENSSCUG00000015605) #31	TLN2 (ENSSCUG00000015594) #33	ENSSCUG00000015590	VPS13C (ENSSCUG00000015328)	RORA (ENSSCUG00000015113)	ICE2 (ENSSCUG00000015089)	ANXA2 (ENSSCUG00000015079)	BNIP2 (ENSSCUG00000015068)
Neognathae	ANCESTRAL SPECIES	11	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00960000187698	ENSGT00940000157387	ENSGT01010000223714	ENSGT00390000006883
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT01010000223714	ENSGT00390000006883	ENSGT00940000154257
Anatidae	ANCESTRAL SPECIES	23	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT01010000223714	ENSGT00390000006883	ENSGT00940000154257
Pink-footed goose	MODERN SPECIES	21	FBXO22 (ENSABRG00000003950)	UBE2Q2 (ENSABRG00000004028)	CHRNB4 (ENSABRG00000004583)	CHRNA3 (ENSABRG00000004602)	CHRNA5 (ENSABRG00000004624)	PSMA4 (ENSABRG00000004638)	HYKK (ENSABRG00000004652)	IREB2 (ENSABRG00000004744)	CRABP1 (ENSABRG00000005068)	SKIC8 (ENSABRG00000005080)	DNAJA4 (ENSABRG00000005135)	ACSBG1 (ENSABRG00000005214)	IDH3A (ENSABRG00000005977)	CIB2 (ENSABRG00000006140)	TBC1D2B (ENSABRG00000006143)	DAPK2 (ENSABRG00000006287) ##22	HERC1 (ENSABRG00000006427) #23	FBXL22 (ENSABRG00000007146) #24	ENSABRG00000007151	USP3 (ENSABRG00000007213) #25	CA12 (ENSABRG00000009150) #26	RAB8B (ENSABRG00000009524) #28	RPS27L (ENSABRG00000009884)	LACTB (ENSABRG00000009891) #30	TPM1 (ENSABRG00000010002) #31	TLN2 (ENSABRG00000010667) #33	ENSABRG00000011819	ENSABRG00000011828	VPS13C (ENSABRG00000012214)	ENSABRG00000015111	RORA (ENSABRG00000015129)
Duck	MODERN SPECIES	2	FBXO22 (ENSAPLG00000028694)	UBE2Q2 (ENSAPLG00000015808)	CHRNB4 (ENSAPLG00000016042)	CHRNA3 (ENSAPLG00000016121)	CHRNA5 (ENSAPLG00000016223)	PSMA4 (ENSAPLG00000016347)	HYKK (ENSAPLG00000016369)	IREB2 (ENSAPLG00000016388)	CRABP1 (ENSAPLG00000000615)	SKIC8 (ENSAPLG00000000756)	DNAJA4 (ENSAPLG00000001467)	ACSBG1 (ENSAPLG00000001656)	IDH3A (ENSAPLG00000001906)	CIB2 (ENSAPLG00000030437)	TBC1D2B (ENSAPLG00000002740)	DAPK2 (ENSAPLG00000002776) ##22	HERC1 (ENSAPLG00000002872) #23	ENSAPLG00000030490	FBXL22 (ENSAPLG00000003321) #24	ENSAPLG00000003323 #25	ENSAPLG00000023215 #25	CA12 (ENSAPLG00000003479) #26	RAB8B (ENSAPLG00000003603) #28	RPS27L (ENSAPLG00000003604)	LACTB (ENSAPLG00000003635) #30	TPM1 (ENSAPLG00000003656) #31	TLN2 (ENSAPLG00000004060) #33	ENSAPLG00000004983	VPS13C (ENSAPLG00000004988)	RORA (ENSAPLG00000005866)	ENSAPLG00000024368
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380.g	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT00390000006883	ENSGT00940000154257	ENSGT00940000160522
Japanese quail	MODERN SPECIES	1	FBXO22 (ENSCJPG00005008046)	UBE2Q2 (ENSCJPG00005008047)	CHRNB4 (ENSCJPG00005008048)	CHRNA3 (ENSCJPG00005008049)	CHRNA5 (ENSCJPG00005008050)	PSMA4 (ENSCJPG00005008051)	HYKK (ENSCJPG00005008052)	IREB2 (ENSCJPG00005008054)	CRABP1 (ENSCJPG00005008058)	SKIC8 (ENSCJPG00005008060)	DNAJA4 (ENSCJPG00005008062)	ACSBG1 (ENSCJPG00005008071)	IDH3A (ENSCJPG00005008236)	CIB2 (ENSCJPG00005008238)	TBC1D2B (ENSCJPG00005008241)	DAPK2 (ENSCJPG00005008242) ##22	HERC1 (ENSCJPG00005008260) #23	FBXL22 (ENSCJPG00005008939) #24	USP3 (ENSCJPG00005008940) #25	CA12 (ENSCJPG00005008941) #26	ENSCJPG00005008942	RAB8B (ENSCJPG00005008943) #28	ENSCJPG00005008944	LACTB (ENSCJPG00005008945) #30	TPM1 (ENSCJPG00005008946) #31	TLN2 (ENSCJPG00005008947) #33	ENSCJPG00005012617	ENSCJPG00005012618	ENSCJPG00005012673	ENSCJPG00005012676	ENSCJPG00005012677
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00960000187698	ENSGT00940000157387	ENSGT01010000223714	ENSGT00390000006883
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737.l	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000157737.k	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26	ENSGT00940000155363 #28	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #30	ENSGT01030000234542.b.a.a.b.a.a #31	ENSGT00940000154699 #33	ENSGT00940000162206	ENSGT00950000183083.a.d.a	ENSGT00940000157387	ENSGT01010000223714
Kakapo	MODERN SPECIES	1	FBXO22 (ENSSHBG00005017874)	CHRNB4 (ENSSHBG00005017868)	UBE2Q2 (ENSSHBG00005017858)	CHRNA3 (ENSSHBG00005017849)	CHRNA5 (ENSSHBG00005017840)	PSMA4 (ENSSHBG00005017827)	HYKK (ENSSHBG00005017819)	IREB2 (ENSSHBG00005017807)	CRABP1 (ENSSHBG00005017797)	SKIC8 (ENSSHBG00005017787)	DNAJA4 (ENSSHBG00005017781)	ACSBG1 (ENSSHBG00005017770)	IDH3A (ENSSHBG00005017761)	CIB2 (ENSSHBG00005017753)	TBC1D2B (ENSSHBG00005017738)	DAPK2 (ENSSHBG00005017733) ##22	HERC1 (ENSSHBG00005017691) #23	FBXL22 (ENSSHBG00005017653) #24	CA12 (ENSSHBG00005017625) #26	USP3 (ENSSHBG00005017610) #25	RAB8B (ENSSHBG00005017591) #28	ENSSHBG00005017596 #28	RPS27L (ENSSHBG00005017587)	LACTB (ENSSHBG00005017583) #30	TPM1 (ENSSHBG00005017566) #31	TLN2 (ENSSHBG00005015587) #33	ENSSHBG00005015405	VPS13C (ENSSHBG00005012548)	RORA (ENSSHBG00005010586)	ENSSHBG00005010361	ICE2 (ENSSHBG00005010337)
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Great tit	MODERN SPECIES	1	CHRNB4 (ENSPMJG00000008462)	CHRNA3 (ENSPMJG00000008463)	CHRNA5 (ENSPMJG00000008465)	PSMA4 (ENSPMJG00000008466)	HYKK (ENSPMJG00000008468)	IREB2 (ENSPMJG00000008471)	CRABP1 (ENSPMJG00000008479)	SKIC8 (ENSPMJG00000008482)	DNAJA4 (ENSPMJG00000008483)	ENSPMJG00000008484	ACSBG1 (ENSPMJG00000008485)	IDH3A (ENSPMJG00000008486)	CIB2 (ENSPMJG00000008487)	ENSPMJG00000008488	ENSPMJG00000008489	DAPK2 (ENSPMJG00000008490) ##22	HERC1 (ENSPMJG00000008491) #23	FBXL22 (ENSPMJG00000008855) #24	USP3 (ENSPMJG00000008856) #25	TPM1 (ENSPMJG00000009994) #31	CA12 (ENSPMJG00000009997) #26	TLN2 (ENSPMJG00000010029) #33	ENSPMJG00000015909	VPS13C (ENSPMJG00000015910)	RORA (ENSPMJG00000015921)	ICE2 (ENSPMJG00000015922)	ANXA2 (ENSPMJG00000015923)	FOXB1 (ENSPMJG00000015925)	BNIP2 (ENSPMJG00000015926)	GTF2A2 (ENSPMJG00000015927)	GCNT3 (ENSPMJG00000015928)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00960000191044	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Flycatcher	MODERN SPECIES	1	UBE2Q2 (ENSFALG00000010677)	CHRNB4 (ENSFALG00000010665)	CHRNA3 (ENSFALG00000010658)	CHRNA5 (ENSFALG00000010653)	PSMA4 (ENSFALG00000025941)	HYKK (ENSFALG00000010641)	IREB2 (ENSFALG00000010640)	CRABP1 (ENSFALG00000010635)	SKIC8 (ENSFALG00000010627)	ENSFALG00000022928	DNAJA4 (ENSFALG00000010621)	ACSBG1 (ENSFALG00000010617)	IDH3A (ENSFALG00000010609)	CIB2 (ENSFALG00000026695)	TBC1D2B (ENSFALG00000010603)	DAPK2 (ENSFALG00000010592) ##22	HERC1 (ENSFALG00000010578) #23	FBXL22 (ENSFALG00000010575) #24	USP3 (ENSFALG00000010571) #25	CA12 (ENSFALG00000010565) #26
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00960000191044	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000159270	ENSGT00550000074827	ENSGT00390000011314	ENSGT00940000157796	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00960000191044	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00940000157327	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b ##22	ENSGT00940000153424.a.a.d #22	ENSGT00940000155907.b #23	ENSGT00390000003748 #24	ENSGT00940000157850 #25	ENSGT00940000159282 #26
Common canary	DUPLICATION
Common canary	MODERN SPECIES	59	UBE2Q2 (ENSSCAG00000012648)	CHRNB4 (ENSSCAG00000012611)	CHRNA3 (ENSSCAG00000012603)	CHRNA5 (ENSSCAG00000012602)	PSMA4 (ENSSCAG00000012596)	HYKK (ENSSCAG00000012595)	IREB2 (ENSSCAG00000012590)	CRABP1 (ENSSCAG00000012583)	SKIC8 (ENSSCAG00000012576)	DNAJA4 (ENSSCAG00000012550)	ENSSCAG00000012539	ENSSCAG00000012532	IDH3A (ENSSCAG00000012522)	CIB2 (ENSSCAG00000012513)	TBC1D2B (ENSSCAG00000012487)	ENSSCAG00000012482 ##22	ENSSCAG00000012474 ##22	HERC1 (ENSSCAG00000011881) #23	FBXL22 (ENSSCAG00000011793) #24	USP3 (ENSSCAG00000011713) #25	CA12 (ENSSCAG00000011682) #26
Common canary	MODERN SPECIES	59	CHRNB4 (ENSSCAG00000012611)	CHRNA3 (ENSSCAG00000012603)	CHRNA5 (ENSSCAG00000012602)	PSMA4 (ENSSCAG00000012596)	HYKK (ENSSCAG00000012595)	IREB2 (ENSSCAG00000012590)	CRABP1 (ENSSCAG00000012583)	SKIC8 (ENSSCAG00000012576)	DNAJA4 (ENSSCAG00000012550)	ENSSCAG00000012539	ENSSCAG00000012532	IDH3A (ENSSCAG00000012522)	CIB2 (ENSSCAG00000012513)	TBC1D2B (ENSSCAG00000012487)	ENSSCAG00000012482 ##22	ENSSCAG00000012474 ##22	HERC1 (ENSSCAG00000011881) #23	FBXL22 (ENSSCAG00000011793) #24	USP3 (ENSSCAG00000011713) #25	CA12 (ENSSCAG00000011682) #26
Medium ground finch	MODERN SPECIES	16	UBE2Q2 (ENSGFOG00000014015)	CHRNB4 (ENSGFOG00000014013)	CHRNA3 (ENSGFOG00000014012)	CHRNA5 (ENSGFOG00000014011)	PSMA4 (ENSGFOG00000014010)	HYKK (ENSGFOG00000014008)	IREB2 (ENSGFOG00000013926)	CRABP1 (ENSGFOG00000013904)	SKIC8 (ENSGFOG00000013900)	DNAJA4 (ENSGFOG00000013897)	ACSBG1 (ENSGFOG00000013896)	IDH3A (ENSGFOG00000013888)	CIB2 (ENSGFOG00000013885)	TBC1D2B (ENSGFOG00000013882)	ENSGFOG00000013880 ##22	DAPK2 (ENSGFOG00000013878) ##22	HERC1 (ENSGFOG00000013876) #23	FBXL22 (ENSGFOG00000013873) #24	USP3 (ENSGFOG00000013866) #25	CA12 (ENSGFOG00000013852) #26	TRPM1 (ENSGFOG00000013008)	MTMR10 (ENSGFOG00000012841)	FAN1 (ENSGFOG00000012829)	MPHOSPH10 (ENSGFOG00000012821)	MCEE (ENSGFOG00000012820)	APBA2 (ENSGFOG00000012815)	ENTREP2 (ENSGFOG00000012797)	TJP1 (ENSGFOG00000012759)	TARS3 (ENSGFOG00000012098)	TM2D3 (ENSGFOG00000012048)	ADAL (ENSGFOG00000012044)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1490	stra6 (ENSCMIG00000007632)	ENSCMIG00000007623	cyp11a1.1 (ENSCMIG00000007594)	TERB2 (ENSCMIG00000007579)	IREB2 (ENSCMIG00000007235)	slc25a44b (ENSCMIG00000007156)	crabp1b (ENSCMIG00000007151)	wdr61 (ENSCMIG00000007145)	ENSCMIG00000007132	ENSCMIG00000007128	idh3a (ENSCMIG00000007038)	lrrc61 (ENSCMIG00000007020)	cib2 (ENSCMIG00000007017)	ENSCMIG00000007013	TBC1D2B (ENSCMIG00000007006)	dapk2a (ENSCMIG00000006998) #22	ENSCMIG00000006984 #23	ENSCMIG00000006969	fbxl22 (ENSCMIG00000006965) #24	usp3 (ENSCMIG00000006952) #25	ENSCMIG00000006941	CA12 (ENSCMIG00000006938) #26	aph1b (ENSCMIG00000006934) #27	rab8b (ENSCMIG00000006928) #28	ENSCMIG00000006900	lactb (ENSCMIG00000006887) #30	tpma (ENSCMIG00000006808) #31	tln2a (ENSCMIG00000006558) #33	c2cd4a (ENSCMIG00000006465)	VPS13C (ENSCMIG00000006325)	roraa (ENSCMIG00000006194)
Elephant shark	MODERN SPECIES	1570	ENSCMIG00000018660	ctns (ENSCMIG00000018690)	palm1b (ENSCMIG00000018692)	PLPPR3 (ENSCMIG00000018693)	ENSCMIG00000018694	ENSCMIG00000018701	ENSCMIG00000018717	ENSCMIG00000018722	sirt6 (ENSCMIG00000018726)	rxfp3.2b (ENSCMIG00000018736)	ENSCMIG00000018739	map2k2a (ENSCMIG00000018756)	ZBTB7A (ENSCMIG00000018762)	ENSCMIG00000018764	eef2 (ENSCMIG00000018833)	ENSCMIG00000018922 #22	ENSCMIG00000018924	ENSCMIG00000018925	ENSCMIG00000018973	ENSCMIG00000019127	ENSCMIG00000019213	ENSCMIG00000019261	ENSCMIG00000019263	ENSCMIG00000019266	dpp9 (ENSCMIG00000019315)	rpl37 (ENSCMIG00000019413)	elavl1b (ENSCMIG00000019418)	cdo1 (ENSCMIG00000019421)	FEM1A (ENSCMIG00000019424)	ENSCMIG00000019426	ENSCMIG00000019428