Murinae	ANCESTRAL SPECIES	32	ENSGT00910000144179.b.a #8	ENSGT00530000064238 #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807	ENSGT00940000159407 #15	ENSGT00940000157355 #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b #25	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b ##27	ENSGT00940000159370 #28	ENSGT00940000156709 #30	ENSGT00940000162424 #31	ENSGT00390000017542 #32	ENSGT00510000048066 #34	ENSGT00870000136506 #35	ENSGT00940000157313 #36	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Mus	ANCESTRAL SPECIES	9	ENSGT00910000144179.b.a #8	ENSGT00530000064238 #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807	ENSGT00940000159407 #15	ENSGT00940000157355 #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b #25	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b ##27	ENSGT00940000159370 #28	ENSGT00950000182987.c.a.a.o.b.h #29	ENSGT00940000156709 #30	ENSGT00940000162424 #31	ENSGT00390000017542 #32	ENSGT00510000048066 #34	ENSGT00870000136506 #35	ENSGT00940000157313 #36	ENSGT00860000136365 #37	ENSGT00940000157080
Mus_A	ANCESTRAL SPECIES	15	ENSGT00910000144179.b.a #8	ENSGT00530000064238 #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807	ENSGT00940000159407 #15	ENSGT00940000157355 #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b #25	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.a.a #27	ENSGT00940000159370 #28	ENSGT00950000182987.c.a.a.o.b.h #29	ENSGT00940000156709 #30	ENSGT00940000162424 #31	ENSGT00390000017542 #32	ENSGT00510000048066 #34	ENSGT00870000136506 #35	ENSGT00940000157313 #36	ENSGT00860000136365 #37	ENSGT00940000157080
Mus_B	ANCESTRAL SPECIES	14	ENSGT00910000144179.b.a #8	ENSGT00530000064238 #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807	ENSGT00940000159407 #15	ENSGT00940000157355 #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b #25	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b ##27	ENSGT00940000159370 #28	ENSGT00950000182987.c.a.a.o.b.h #29	ENSGT00940000156709 #30	ENSGT00940000162424 #31	ENSGT00390000017542 #32	ENSGT00510000048066 #34	ENSGT00870000136506 #35	ENSGT00940000157313 #36	ENSGT00860000136365 #37	ENSGT00940000157080
Mus_C	ANCESTRAL SPECIES	22	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #8	ENSGT00530000064238 #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407 #15	ENSGT00940000157355 #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b #25	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.a.a #27	ENSGT00940000159370 #28	ENSGT00950000182987.c.a.a.o.b.h #29	ENSGT00940000156709 #30	ENSGT00940000162424 #31	ENSGT00390000017542 #32	ENSGT00510000048066 #34	ENSGT00870000136506 #35	ENSGT00940000157313 #36	ENSGT00860000136365 #37	ENSGT00940000157080
spretus	MODERN SPECIES	19	S100g (MGP_SPRETEiJ_G0034721) #7	Ctps2 (MGP_SPRETEiJ_G0034720) #8	Syap1 (MGP_SPRETEiJ_G0034719) #9	Txlng (MGP_SPRETEiJ_G0034718) #10	Rbbp7 (MGP_SPRETEiJ_G0034717) #11	Reps2 (MGP_SPRETEiJ_G0034716) #12	Nhs (MGP_SPRETEiJ_G0034715) #13	Rai2 (MGP_SPRETEiJ_G0034714) #14	MGP_SPRETEiJ_G0034713 #15	Gja6 (MGP_SPRETEiJ_G0034712) #16	Cdkl5 (MGP_SPRETEiJ_G0034711) #17	Rs1 (MGP_SPRETEiJ_G0034710) #18	Ppef1 (MGP_SPRETEiJ_G0034709) #19	Phka2 (MGP_SPRETEiJ_G0034708) #20	Adgrg2 (MGP_SPRETEiJ_G0034707) #21	Pdha1 (MGP_SPRETEiJ_G0034706) #22	Map3k15 (MGP_SPRETEiJ_G0034705) #23	Sh3kbp1 (MGP_SPRETEiJ_G0034704) #24	Bclaf3 (MGP_SPRETEiJ_G0034703) #25	Map7d2 (MGP_SPRETEiJ_G0034702) #26	MGP_SPRETEiJ_G0034701 #27	Rps6ka3 (MGP_SPRETEiJ_G0034700) #28	MGP_SPRETEiJ_G0034699 #29	Cnksr2 (MGP_SPRETEiJ_G0034698) #30	Klhl34 (MGP_SPRETEiJ_G0034697) #31	Smpx (MGP_SPRETEiJ_G0034696) #32	Yy2 (MGP_SPRETEiJ_G0034695) #33	Mbtps2 (MGP_SPRETEiJ_G0034694) #34	Sms (MGP_SPRETEiJ_G0034693) #35	Phex (MGP_SPRETEiJ_G0034692) #36	MGP_SPRETEiJ_G0034691 #37
Steppe mouse	MODERN SPECIES	1826																ENSMSIG00000000851 #22	Map3k15 (ENSMSIG00000000871) #23
Mouse	MODERN SPECIES	37	Ctps2 (ENSMUSG00000031360) #8	Syap1 (ENSMUSG00000031357) #9	Txlng (ENSMUSG00000038344) #10	Rbbp7 (ENSMUSG00000031353) #11	Reps2 (ENSMUSG00000040855) #12	Nhs (ENSMUSG00000059493) #13	Rai2 (ENSMUSG00000043518) #14	Bend2 (ENSMUSG00000108981)	Scml2 (ENSMUSG00000000037) #15	Gja6 (ENSMUSG00000055691) #16	Cdkl5 (ENSMUSG00000031292) #17	Rs1 (ENSMUSG00000031293) #18	Ppef1 (ENSMUSG00000062168) #19	Phka2 (ENSMUSG00000031295) #20	Adgrg2 (ENSMUSG00000031298) #21	Pdha1 (ENSMUSG00000031299) #22	Map3k15 (ENSMUSG00000031303) #23	Sh3kbp1 (ENSMUSG00000040990) #24	Bclaf3 (ENSMUSG00000044150) #25	Map7d2 (ENSMUSG00000041020) #26	Eif1ax (ENSMUSG00000067194) ##27	Rps6ka3 (ENSMUSG00000031309) #28	Cnksr2 (ENSMUSG00000025658) #30	Klhl34 (ENSMUSG00000047485) #31	Smpx (ENSMUSG00000041476) #32	Yy2 (ENSMUSG00000091736) #33	Mbtps2 (ENSMUSG00000046873) #34	Sms (ENSMUSG00000071708) #35	Phex (ENSMUSG00000057457) #36	Gm15155 (ENSMUSG00000055109) #37	Ptchd1 (ENSMUSG00000041552)
Ryukyu mouse	MODERN SPECIES	19	S100g (MGP_CAROLIEiJ_G0033551) #7	Ctps2 (MGP_CAROLIEiJ_G0033550) #8	Syap1 (MGP_CAROLIEiJ_G0033549) #9	Txlng (MGP_CAROLIEiJ_G0033548) #10	Rbbp7 (MGP_CAROLIEiJ_G0033547) #11	Reps2 (MGP_CAROLIEiJ_G0033546) #12	Nhs (MGP_CAROLIEiJ_G0033545) #13	Rai2 (MGP_CAROLIEiJ_G0033544) #14	MGP_CAROLIEiJ_G0033543 #15	Gja6 (MGP_CAROLIEiJ_G0033542) #16	Cdkl5 (MGP_CAROLIEiJ_G0033541) #17	Rs1 (MGP_CAROLIEiJ_G0033540) #18	Ppef1 (MGP_CAROLIEiJ_G0033539) #19	Phka2 (MGP_CAROLIEiJ_G0033538) #20	Adgrg2 (MGP_CAROLIEiJ_G0033537) #21	Pdha1 (MGP_CAROLIEiJ_G0033536) #22	Map3k15 (MGP_CAROLIEiJ_G0033535) #23	Sh3kbp1 (MGP_CAROLIEiJ_G0033534) #24	Bclaf3 (MGP_CAROLIEiJ_G0033533) #25	Map7d2 (MGP_CAROLIEiJ_G0033532) #26	MGP_CAROLIEiJ_G0033531 #27	Rps6ka3 (MGP_CAROLIEiJ_G0033530) #28	MGP_CAROLIEiJ_G0033529 ##29	Cnksr2 (MGP_CAROLIEiJ_G0033528) #30	Klhl34 (MGP_CAROLIEiJ_G0033527) #31	Smpx (MGP_CAROLIEiJ_G0033526) #32	Yy2 (MGP_CAROLIEiJ_G0033525) #33	Mbtps2 (MGP_CAROLIEiJ_G0033524) #34	Sms (MGP_CAROLIEiJ_G0033523) #35	Phex (MGP_CAROLIEiJ_G0033522) #36	MGP_CAROLIEiJ_G0033521 #37
Shrew mouse	MODERN SPECIES	23	S100g (MGP_PahariEiJ_G0032090) #7	Ctps2 (MGP_PahariEiJ_G0032089) #8	Syap1 (MGP_PahariEiJ_G0032088) #9	Txlng (MGP_PahariEiJ_G0032087) #10	Rbbp7 (MGP_PahariEiJ_G0032086) #11	Reps2 (MGP_PahariEiJ_G0032085) #12	Nhs (MGP_PahariEiJ_G0032084) #13	Rai2 (MGP_PahariEiJ_G0032083) #14	MGP_PahariEiJ_G0032082 #15	Gja6 (MGP_PahariEiJ_G0032081) #16	Cdkl5 (MGP_PahariEiJ_G0032080) #17	Rs1 (MGP_PahariEiJ_G0032079) #18	Ppef1 (MGP_PahariEiJ_G0032078) #19	Phka2 (MGP_PahariEiJ_G0032077) #20	Adgrg2 (MGP_PahariEiJ_G0032076) #21	Pdha1 (MGP_PahariEiJ_G0032075) #22	Map3k15 (MGP_PahariEiJ_G0032074) #23	Sh3kbp1 (MGP_PahariEiJ_G0032073) #24	Bclaf3 (MGP_PahariEiJ_G0032072) #25	Map7d2 (MGP_PahariEiJ_G0032071) #26	MGP_PahariEiJ_G0032070 ##27	Rps6ka3 (MGP_PahariEiJ_G0032069) #28	MGP_PahariEiJ_G0032068 #29	Cnksr2 (MGP_PahariEiJ_G0032067) #30	Klhl34 (MGP_PahariEiJ_G0032066) #31	Smpx (MGP_PahariEiJ_G0032065) #32	Yy2 (MGP_PahariEiJ_G0032064) #33	Mbtps2 (MGP_PahariEiJ_G0032063) #34	Sms (MGP_PahariEiJ_G0032062) #35	Phex (MGP_PahariEiJ_G0032061) #36	MGP_PahariEiJ_G0032060 #37
Rat	DUPLICATION
Rat	MODERN SPECIES	7											Shcbp1 (ENSRNOG00000053026)	ENSRNOG00000069339	ENSRNOG00000064130	ENSRNOG00000062801	Slc10a2 (ENSRNOG00000037753)	Pdha1l1 (ENSRNOG00000014745) #22	Efnb2 (ENSRNOG00000064362)	Arglu1 (ENSRNOG00000024142)	Nalf1 (ENSRNOG00000066120)	Lig4 (ENSRNOG00000014605)	Abhd13 (ENSRNOG00000014598)	AABR07026596.2 (ENSRNOG00000055140)	Tnfsf13b (ENSRNOG00000014464)	Myo16 (ENSRNOG00000016483)	LOC689713 (ENSRNOG00000033703)	ENSRNOG00000063036	Irs2 (ENSRNOG00000023509)	Col4a1 (ENSRNOG00000016281)	Col4a2 (ENSRNOG00000023972)	Rab20 (ENSRNOG00000023991)	Naxd (ENSRNOG00000015021)
Rat	MODERN SPECIES	46	Nhs (ENSRNOG00000030759) #13	Scml1 (ENSRNOG00000052694)	RGD1566197 (ENSRNOG00000032797)	Rai2 (ENSRNOG00000006670) #14	Scml2 (ENSRNOG00000003726) #15	Cdkl5 (ENSRNOG00000003742) #17	Gja6 (ENSRNOG00000069341) #16	Rs1 (ENSRNOG00000030434) #18	ENSRNOG00000065877	Ppef1 (ENSRNOG00000027331) #19	AABR07037995.1 (ENSRNOG00000003949) #20	Adgrg2 (ENSRNOG00000032472) #21	Rps27a-ps5 (ENSRNOG00000032132)	ENSRNOG00000069571	Lamtor1 (ENSRNOG00000004319)	Pdha1 (ENSRNOG00000025383) #22	Map3k15 (ENSRNOG00000025290) #23	ENSRNOG00000066262	Sh3kbp1 (ENSRNOG00000004322) #24	Bclaf3 (ENSRNOG00000005135) #25	Map7d2 (ENSRNOG00000005176) #26	Eif1ax (ENSRNOG00000005736) ##27	Rps6ka3 (ENSRNOG00000006632) #28	ENSRNOG00000062879	Cnksr2 (ENSRNOG00000007014) #30	Klhl34 (ENSRNOG00000024479) #31	Smpx (ENSRNOG00000007495) #32	ENSRNOG00000068938	Yy2 (ENSRNOG00000007644) #34	Sms (ENSRNOG00000007688) #35	Phex (ENSRNOG00000023440) #36