Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000063174.a #22
Gnathostomata	ANCESTRAL SPECIES	639													ENSGT01100000263512.b.b.b	ENSGT00940000156341 #21	ENSGT01030000234935	ENSGT00530000063174.a #22	ENSGT00940000159562 #23
Euteleostomi	ANCESTRAL SPECIES	20	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000165126	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT01100000263502.A.a.a.a.a	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT01030000234935	ENSGT00950000182941.b.a ##26	ENSGT00940000154833	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.b	ENSGT00940000155266	ENSGT00590000083134.b	ENSGT00390000015476	ENSGT00940000155028	ENSGT00950000182865.b.a.b.b.b.b	ENSGT00390000004360.a.b.a.a.a	ENSGT00390000013938	ENSGT01050000244955.a.b	ENSGT01050000244897.a.b.a
Sarcopterygii	ANCESTRAL SPECIES	117													ENSGT00910000144179.b.a #7	ENSGT01100000263512.b.b.a	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT01030000235848	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a
Tetrapoda	ANCESTRAL SPECIES		ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Amniota	ANCESTRAL SPECIES		ENSGT00530000064238 #8	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Mammalia	ANCESTRAL SPECIES		ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Theria	ANCESTRAL SPECIES	1	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Eutheria	DUPLICATION
Eutheria	ANCESTRAL SPECIES	26	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Glires	ANCESTRAL SPECIES	10	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Rodentia	ANCESTRAL SPECIES	10	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Rodentia_B	ANCESTRAL SPECIES	31	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Muroidea	ANCESTRAL SPECIES	30	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C.p.b #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.a.a ##28	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.cc.a #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C.p.b #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.cc.a #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Golden Hamster	MODERN SPECIES	661	Ctps2 (ENSMAUG00000017364) #7	S100g (ENSMAUG00000018622) #8	Syap1 (ENSMAUG00000004105) #9	Txlng (ENSMAUG00000016890) #10	Rbbp7 (ENSMAUG00000008982) #11	Reps2 (ENSMAUG00000017739) #12	Nhs (ENSMAUG00000016663) #13	Rai2 (ENSMAUG00000010443) #14	ENSMAUG00000014559 #15	Cdkl5 (ENSMAUG00000009424) #16	Gja6 (ENSMAUG00000016764) #17	Rs1 (ENSMAUG00000017955) #18	Ppef1 (ENSMAUG00000016981) #19	Phka2 (ENSMAUG00000001285) #20	Adgrg2 (ENSMAUG00000001544) #21	Pdha1 (ENSMAUG00000002413) #22	Map3k15 (ENSMAUG00000006183) #23	Sh3kbp1 (ENSMAUG00000017328) #24	ENSMAUG00000009356 #25	Map7d2 (ENSMAUG00000016214) #26	ENSMAUG00000007856 #27	ENSMAUG00000012396 #28	Rps6ka3 (ENSMAUG00000015390) #29	ENSMAUG00000017351 #30	ENSMAUG00000008169 #31	Cnksr2 (ENSMAUG00000021259) #32	Smpx (ENSMAUG00000016078) #33	Mbtps2 (ENSMAUG00000017121) #34	Yy2 (ENSMAUG00000016161) #35	Sms (ENSMAUG00000017854) #36	Phex (ENSMAUG00000016421) #37
Chinese hamster chok1gshd	MODERN SPECIES	230	Ctps2 (ENSCGRG00001020136) #7	Syap1 (ENSCGRG00001017761) #9	Txlng (ENSCGRG00001016480) #10	ENSCGRG00001007647 #11	Reps2 (ENSCGRG00001011156) #12	Nhs (ENSCGRG00001020344) #13	Rai2 (ENSCGRG00001015408) #14	ENSCGRG00001012613 #15	Scml2 (ENSCGRG00001017848)	Cdkl5 (ENSCGRG00001020755) #16	Rs1 (ENSCGRG00001017692) #18	Ppef1 (ENSCGRG00001015088) #19	Phka2 (ENSCGRG00001021729) #20	Adgrg2 (ENSCGRG00001022355) #21	ENSCGRG00001020861	Pdha1 (ENSCGRG00001020742) #22	Map3k15 (ENSCGRG00001017037) #23	Sh3kbp1 (ENSCGRG00001012962) #24	Bclaf3 (ENSCGRG00001017632)	Map7d2 (ENSCGRG00001005576) #26	ENSCGRG00001022852 #28	Rps6ka3 (ENSCGRG00001007518) #29	Cnksr2 (ENSCGRG00001022169) #32	Klhl34 (ENSCGRG00001014357)	Smpx (ENSCGRG00001020401) #33	MBTPS2 (ENSCGRG00001018020) #34	ENSCGRG00001000646 #36	Phex (ENSCGRG00001019759) #37	ENSCGRG00001015986	ENSCGRG00001015828	Ptchd1 (ENSCGRG00001010854)
Cricetidae_B	ANCESTRAL SPECIES	36	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C.p.b #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.a.a ##28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.cc.a #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Prairie vole	MODERN SPECIES	360	Syap1 (ENSMOCG00000003662) #9	ENSMOCG00000007235 #10	Rbbp7 (ENSMOCG00000019533) #11	Reps2 (ENSMOCG00000007173) #12	ENSMOCG00000001018	ENSMOCG00000006840	Nhs (ENSMOCG00000016164) #13	Rai2 (ENSMOCG00000020088) #14	Bend2 (ENSMOCG00000002447) #15	Scml2 (ENSMOCG00000004081)	Cdkl5 (ENSMOCG00000014110) #16	Rs1 (ENSMOCG00000012992) #18	Ppef1 (ENSMOCG00000019014) #19	Phka2 (ENSMOCG00000021208) #20	Adgrg2 (ENSMOCG00000011315) #21	Pdha1 (ENSMOCG00000002601) #22	Map3k15 (ENSMOCG00000013071) #23	Sh3kbp1 (ENSMOCG00000020425) #24	Bclaf3 (ENSMOCG00000005833)	Map7d2 (ENSMOCG00000019149) #26	ENSMOCG00000004138	ENSMOCG00000013551 ##28	Rps6ka3 (ENSMOCG00000012164) #29	ENSMOCG00000016797	ENSMOCG00000017907	Cnksr2 (ENSMOCG00000000158) #32	Smpx (ENSMOCG00000009712) #33	Mbtps2 (ENSMOCG00000016533) #34	Yy2 (ENSMOCG00000013780) #35	Sms (ENSMOCG00000016092) #36	Phex (ENSMOCG00000021326) #37
Northern American deer mouse	MODERN SPECIES	475	Syap1 (ENSPEMG00000017603) #9	Txlng (ENSPEMG00000000072) #10	Rbbp7 (ENSPEMG00000000458) #11	ENSPEMG00000031235	Reps2 (ENSPEMG00000006508) #12	Nhs (ENSPEMG00000017716) #13	Rai2 (ENSPEMG00000008659) #14	Bend2 (ENSPEMG00000011757) #15	ENSPEMG00000030730	Cdkl5 (ENSPEMG00000002138) #16	Rs1 (ENSPEMG00000008058) #18	Ppef1 (ENSPEMG00000012697) #19	Phka2 (ENSPEMG00000004706) #20	Adgrg2 (ENSPEMG00000001110) #21	ENSPEMG00000026878	Pdha1 (ENSPEMG00000008945) #22	Map3k15 (ENSPEMG00000012858) #23	Sh3kbp1 (ENSPEMG00000007129) #24	Bclaf3 (ENSPEMG00000008136)	Map7d2 (ENSPEMG00000000311) #26	ENSPEMG00000026098 ##28	Rps6ka3 (ENSPEMG00000018584) #29	ENSPEMG00000026965	Cnksr2 (ENSPEMG00000012770) #32	Klhl34 (ENSPEMG00000026377)	Smpx (ENSPEMG00000011852) #33	ENSPEMG00000026716	Mbtps2 (ENSPEMG00000012008) #34	Sms (ENSPEMG00000003756) #36	Phex (ENSPEMG00000017527) #37	Ptchd1 (ENSPEMG00000024561)
Murinae	ANCESTRAL SPECIES	32	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Mus	ANCESTRAL SPECIES	9	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00860000136365	ENSGT00940000157080
Mus_A	ANCESTRAL SPECIES	15	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.a.a ##28	ENSGT00940000159370 #29	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00860000136365	ENSGT00940000157080
Mus_B	ANCESTRAL SPECIES	14	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.b #28	ENSGT00940000159370 #29	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00860000136365	ENSGT00940000157080
Mouse	MODERN SPECIES	37	Ctps2 (ENSMUSG00000031360) #7	Syap1 (ENSMUSG00000031357) #9	Txlng (ENSMUSG00000038344) #10	Rbbp7 (ENSMUSG00000031353) #11	Reps2 (ENSMUSG00000040855) #12	Nhs (ENSMUSG00000059493) #13	Rai2 (ENSMUSG00000043518) #14	Bend2 (ENSMUSG00000108981) #15	Scml2 (ENSMUSG00000000037)	Gja6 (ENSMUSG00000055691) #17	Cdkl5 (ENSMUSG00000031292) #16	Rs1 (ENSMUSG00000031293) #18	Ppef1 (ENSMUSG00000062168) #19	Phka2 (ENSMUSG00000031295) #20	Adgrg2 (ENSMUSG00000031298) #21	Pdha1 (ENSMUSG00000031299) #22	Map3k15 (ENSMUSG00000031303) #23	Sh3kbp1 (ENSMUSG00000040990) #24	Bclaf3 (ENSMUSG00000044150)	Map7d2 (ENSMUSG00000041020) #26	Eif1ax (ENSMUSG00000067194) #28	Rps6ka3 (ENSMUSG00000031309) #29	Cnksr2 (ENSMUSG00000025658) #32	Klhl34 (ENSMUSG00000047485)	Smpx (ENSMUSG00000041476) #33	Yy2 (ENSMUSG00000091736) #35	Mbtps2 (ENSMUSG00000046873) #34	Sms (ENSMUSG00000071708) #36	Phex (ENSMUSG00000057457) #37	Gm15155 (ENSMUSG00000055109)	Ptchd1 (ENSMUSG00000041552)
Mus_C	ANCESTRAL SPECIES	22	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j.a.a ##28	ENSGT00940000159370 #29	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00860000136365	ENSGT00940000157080
Steppe mouse	MODERN SPECIES	1826																ENSMSIG00000000851 #22	Map3k15 (ENSMSIG00000000871) #23
spretus	MODERN SPECIES	19	S100g (MGP_SPRETEiJ_G0034721) #8	Ctps2 (MGP_SPRETEiJ_G0034720) #7	Syap1 (MGP_SPRETEiJ_G0034719) #9	Txlng (MGP_SPRETEiJ_G0034718) #10	Rbbp7 (MGP_SPRETEiJ_G0034717) #11	Reps2 (MGP_SPRETEiJ_G0034716) #12	Nhs (MGP_SPRETEiJ_G0034715) #13	Rai2 (MGP_SPRETEiJ_G0034714) #14	MGP_SPRETEiJ_G0034713	Gja6 (MGP_SPRETEiJ_G0034712) #17	Cdkl5 (MGP_SPRETEiJ_G0034711) #16	Rs1 (MGP_SPRETEiJ_G0034710) #18	Ppef1 (MGP_SPRETEiJ_G0034709) #19	Phka2 (MGP_SPRETEiJ_G0034708) #20	Adgrg2 (MGP_SPRETEiJ_G0034707) #21	Pdha1 (MGP_SPRETEiJ_G0034706) #22	Map3k15 (MGP_SPRETEiJ_G0034705) #23	Sh3kbp1 (MGP_SPRETEiJ_G0034704) #24	Bclaf3 (MGP_SPRETEiJ_G0034703)	Map7d2 (MGP_SPRETEiJ_G0034702) #26	MGP_SPRETEiJ_G0034701 ##28	Rps6ka3 (MGP_SPRETEiJ_G0034700) #29	MGP_SPRETEiJ_G0034699	Cnksr2 (MGP_SPRETEiJ_G0034698) #32	Klhl34 (MGP_SPRETEiJ_G0034697)	Smpx (MGP_SPRETEiJ_G0034696) #33	Yy2 (MGP_SPRETEiJ_G0034695) #35	Mbtps2 (MGP_SPRETEiJ_G0034694) #34	Sms (MGP_SPRETEiJ_G0034693) #36	Phex (MGP_SPRETEiJ_G0034692) #37	MGP_SPRETEiJ_G0034691
Ryukyu mouse	MODERN SPECIES	19	S100g (MGP_CAROLIEiJ_G0033551) #8	Ctps2 (MGP_CAROLIEiJ_G0033550) #7	Syap1 (MGP_CAROLIEiJ_G0033549) #9	Txlng (MGP_CAROLIEiJ_G0033548) #10	Rbbp7 (MGP_CAROLIEiJ_G0033547) #11	Reps2 (MGP_CAROLIEiJ_G0033546) #12	Nhs (MGP_CAROLIEiJ_G0033545) #13	Rai2 (MGP_CAROLIEiJ_G0033544) #14	MGP_CAROLIEiJ_G0033543	Gja6 (MGP_CAROLIEiJ_G0033542) #17	Cdkl5 (MGP_CAROLIEiJ_G0033541) #16	Rs1 (MGP_CAROLIEiJ_G0033540) #18	Ppef1 (MGP_CAROLIEiJ_G0033539) #19	Phka2 (MGP_CAROLIEiJ_G0033538) #20	Adgrg2 (MGP_CAROLIEiJ_G0033537) #21	Pdha1 (MGP_CAROLIEiJ_G0033536) #22	Map3k15 (MGP_CAROLIEiJ_G0033535) #23	Sh3kbp1 (MGP_CAROLIEiJ_G0033534) #24	Bclaf3 (MGP_CAROLIEiJ_G0033533)	Map7d2 (MGP_CAROLIEiJ_G0033532) #26	MGP_CAROLIEiJ_G0033531 ##28	Rps6ka3 (MGP_CAROLIEiJ_G0033530) #29	MGP_CAROLIEiJ_G0033529	Cnksr2 (MGP_CAROLIEiJ_G0033528) #32	Klhl34 (MGP_CAROLIEiJ_G0033527)	Smpx (MGP_CAROLIEiJ_G0033526) #33	Yy2 (MGP_CAROLIEiJ_G0033525) #35	Mbtps2 (MGP_CAROLIEiJ_G0033524) #34	Sms (MGP_CAROLIEiJ_G0033523) #36	Phex (MGP_CAROLIEiJ_G0033522) #37	MGP_CAROLIEiJ_G0033521
Shrew mouse	MODERN SPECIES	23	S100g (MGP_PahariEiJ_G0032090) #8	Ctps2 (MGP_PahariEiJ_G0032089) #7	Syap1 (MGP_PahariEiJ_G0032088) #9	Txlng (MGP_PahariEiJ_G0032087) #10	Rbbp7 (MGP_PahariEiJ_G0032086) #11	Reps2 (MGP_PahariEiJ_G0032085) #12	Nhs (MGP_PahariEiJ_G0032084) #13	Rai2 (MGP_PahariEiJ_G0032083) #14	MGP_PahariEiJ_G0032082	Gja6 (MGP_PahariEiJ_G0032081) #17	Cdkl5 (MGP_PahariEiJ_G0032080) #16	Rs1 (MGP_PahariEiJ_G0032079) #18	Ppef1 (MGP_PahariEiJ_G0032078) #19	Phka2 (MGP_PahariEiJ_G0032077) #20	Adgrg2 (MGP_PahariEiJ_G0032076) #21	Pdha1 (MGP_PahariEiJ_G0032075) #22	Map3k15 (MGP_PahariEiJ_G0032074) #23	Sh3kbp1 (MGP_PahariEiJ_G0032073) #24	Bclaf3 (MGP_PahariEiJ_G0032072)	Map7d2 (MGP_PahariEiJ_G0032071) #26	MGP_PahariEiJ_G0032070 #28	Rps6ka3 (MGP_PahariEiJ_G0032069) #29	MGP_PahariEiJ_G0032068	Cnksr2 (MGP_PahariEiJ_G0032067) #32	Klhl34 (MGP_PahariEiJ_G0032066)	Smpx (MGP_PahariEiJ_G0032065) #33	Yy2 (MGP_PahariEiJ_G0032064) #35	Mbtps2 (MGP_PahariEiJ_G0032063) #34	Sms (MGP_PahariEiJ_G0032062) #36	Phex (MGP_PahariEiJ_G0032061) #37	MGP_PahariEiJ_G0032060
Rat	DUPLICATION
Rat	MODERN SPECIES	7											Shcbp1 (ENSRNOG00000053026)	ENSRNOG00000069339	ENSRNOG00000064130	ENSRNOG00000062801	Slc10a2 (ENSRNOG00000037753)	Pdha1l1 (ENSRNOG00000014745) #22	Efnb2 (ENSRNOG00000064362)	Arglu1 (ENSRNOG00000024142)	Nalf1 (ENSRNOG00000066120)	Lig4 (ENSRNOG00000014605)	Abhd13 (ENSRNOG00000014598)	AABR07026596.2 (ENSRNOG00000055140)	Tnfsf13b (ENSRNOG00000014464)	Myo16 (ENSRNOG00000016483)	LOC689713 (ENSRNOG00000033703)	ENSRNOG00000063036	Irs2 (ENSRNOG00000023509)	Col4a1 (ENSRNOG00000016281)	Col4a2 (ENSRNOG00000023972)	Rab20 (ENSRNOG00000023991)	Naxd (ENSRNOG00000015021)
Rat	MODERN SPECIES	46	Nhs (ENSRNOG00000030759) #13	Scml1 (ENSRNOG00000052694)	RGD1566197 (ENSRNOG00000032797)	Rai2 (ENSRNOG00000006670) #14	Scml2 (ENSRNOG00000003726)	Cdkl5 (ENSRNOG00000003742) #16	Gja6 (ENSRNOG00000069341) #17	Rs1 (ENSRNOG00000030434) #18	ENSRNOG00000065877	Ppef1 (ENSRNOG00000027331) #19	AABR07037995.1 (ENSRNOG00000003949) #20	Adgrg2 (ENSRNOG00000032472) #21	Rps27a-ps5 (ENSRNOG00000032132)	ENSRNOG00000069571	Lamtor1 (ENSRNOG00000004319)	Pdha1 (ENSRNOG00000025383) #22	Map3k15 (ENSRNOG00000025290) #23	ENSRNOG00000066262	Sh3kbp1 (ENSRNOG00000004322) #24	Bclaf3 (ENSRNOG00000005135)	Map7d2 (ENSRNOG00000005176) #26	Eif1ax (ENSRNOG00000005736) #28	Rps6ka3 (ENSRNOG00000006632) #29	ENSRNOG00000062879	Cnksr2 (ENSRNOG00000007014) #32	Klhl34 (ENSRNOG00000024479)	Smpx (ENSRNOG00000007495) #33	ENSRNOG00000068938	Yy2 (ENSRNOG00000007644) #34	Sms (ENSRNOG00000007688) #36	Phex (ENSRNOG00000023440) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	931											Cdkl5 (ENSNGAG00000010787) #16	Rs1 (ENSNGAG00000010391) #18	Ppef1 (ENSNGAG00000014571) #19	ENSNGAG00000017231 #20	Adgrg2 (ENSNGAG00000011202) #21	Pdha1 (ENSNGAG00000015013) #22	Map3k15 (ENSNGAG00000018804) #23	Sh3kbp1 (ENSNGAG00000021155) #24	Bclaf3 (ENSNGAG00000015524)	Map7d2 (ENSNGAG00000016712) #26	Eif1ax (ENSNGAG00000018551) #28	Rps6ka3 (ENSNGAG00000019940) #29	Cnksr2 (ENSNGAG00000009070) #32
Lesser Egyptian jerboa	MODERN SPECIES	147	ENSJJAG00000018971	S100g (ENSJJAG00000018528) #8	Ctps2 (ENSJJAG00000017649) #7	Syap1 (ENSJJAG00000015936) #9	ENSJJAG00000015727 #10	Rbbp7 (ENSJJAG00000015390) #11	Reps2 (ENSJJAG00000013946) #12	ENSJJAG00000012765	Nhs (ENSJJAG00000012415) #13	Rai2 (ENSJJAG00000011458) #14	Cdkl5 (ENSJJAG00000011323) #16	Rs1 (ENSJJAG00000000704) #18	Ppef1 (ENSJJAG00000000417) #19	ENSJJAG00000000145 #20	Adgrg2 (ENSJJAG00000016266) #21	Pdha1 (ENSJJAG00000013156) #22	Map3k15 (ENSJJAG00000012581) #23	Sh3kbp1 (ENSJJAG00000011003) #24	ENSJJAG00000009450	ENSJJAG00000008028	ENSJJAG00000007541	ENSJJAG00000006859	Tbl1x (ENSJJAG00000006406)	ENSJJAG00000004898	ENSJJAG00000003177
Kangaroo rat	MODERN SPECIES	413													ENSDORG00000011776 #19	ENSDORG00000026958 #20	Adgrg2 (ENSDORG00000003270) #21	Pdha1 (ENSDORG00000011848) #22	Map3k15 (ENSDORG00000011849) #23	Sh3kbp1 (ENSDORG00000005919) #24	Bclaf3 (ENSDORG00000007988)	Map7d2 (ENSDORG00000007990) #26	ENSDORG00000011536 ##28	Rps6ka3 (ENSDORG00000011802) #29	ENSDORG00000029700	Cnksr2 (ENSDORG00000010230) #32	Smpx (ENSDORG00000003075) #33	Mbtps2 (ENSDORG00000011065) #34	Yy2 (ENSDORG00000011068) #35	ENSDORG00000016069 #36	ENSDORG00000025753	Phex (ENSDORG00000010976) #37	Ptchd1 (ENSDORG00000004212)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000155485	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	60	ENSGT00530000064238 #8	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000154763.mb #35	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Hystricomorpha_b	ANCESTRAL SPECIES	73	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000154763.mb #35	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Degu	DUPLICATION
Degu	MODERN SPECIES	51																ENSODEG00000017773 #22	MAP3K15 (ENSODEG00000017836) #23	SH3KBP1 (ENSODEG00000017905) #24	BCLAF3 (ENSODEG00000018128)	ENSODEG00000017632	MAP7D2 (ENSODEG00000017740) #26	ENSODEG00000017687 #28	RPS6KA3 (ENSODEG00000017781) #29	C10orf82 (ENSODEG00000017640)	HSPA12A (ENSODEG00000017751)	ENO4 (ENSODEG00000017769)	ENSODEG00000017934	ENSODEG00000017664	ENSODEG00000017629	VAX1 (ENSODEG00000017835)	ENSODEG00000017686
Degu	MODERN SPECIES	200															ENSODEG00000001487	ENSODEG00000001474 #22	ZDHHC13 (ENSODEG00000001434)	CSRP3 (ENSODEG00000001395)	E2F8 (ENSODEG00000001309)	ENSODEG00000001265	NAV2 (ENSODEG00000001086)	DBX1 (ENSODEG00000000930)	HTATIP2 (ENSODEG00000000910)	ENSODEG00000000894	PRMT3 (ENSODEG00000000824)	SLC6A5 (ENSODEG00000000719)	ENSODEG00000018648	NELL1 (ENSODEG00000000600)	ENSODEG00000000998	ANO5 (ENSODEG00000000906)	SLC17A6 (ENSODEG00000000829)
Long-tailed chinchilla	MODERN SPECIES	293											CDKL5 (ENSCLAG00000000414) #16	RS1 (ENSCLAG00000000386) #18	PPEF1 (ENSCLAG00000000360) #19	PHKA2 (ENSCLAG00000000312) #20	ADGRG2 (ENSCLAG00000000208) #21	PDHA1 (ENSCLAG00000000108) #22	MAP3K15 (ENSCLAG00000000098) #23
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	59								NHS (ENSCPOG00000020088) #13	ENSCPOG00000038636	RAI2 (ENSCPOG00000015535) #14	CDKL5 (ENSCPOG00000007438) #16	RS1 (ENSCPOG00000007446) #18	PPEF1 (ENSCPOG00000006617) #19	PHKA2 (ENSCPOG00000011064) #20	ADGRG2 (ENSCPOG00000011079) #21	ENSCPOG00000009280 #22	MAP3K15 (ENSCPOG00000011102) #23	SH3KBP1 (ENSCPOG00000006433) #24	BCLAF3 (ENSCPOG00000008695)	MAP7D2 (ENSCPOG00000008706) #26	EIF1AX (ENSCPOG00000039205) ##28	RPS6KA3 (ENSCPOG00000008719) #29	CNKSR2 (ENSCPOG00000009806) #32	KLHL34 (ENSCPOG00000035985)	SMPX (ENSCPOG00000033393) #33	MBTPS2 (ENSCPOG00000006171) #34	ENSCPOG00000006176 #36	PHEX (ENSCPOG00000006183) #37	ENSCPOG00000013960	PTCHD1 (ENSCPOG00000035225)	PRDX4 (ENSCPOG00000004185)
Guinea pig	MODERN SPECIES	49							ENSCPOG00000033799	ENSCPOG00000008532	ENSCPOG00000011552	ENSCPOG00000040037	CCNC (ENSCPOG00000011792)	ENSCPOG00000032336	USP45 (ENSCPOG00000010267)	PNISR (ENSCPOG00000033472)	COQ3 (ENSCPOG00000005688)	ENSCPOG00000026200 #22	FAXC (ENSCPOG00000005687)	FBXL4 (ENSCPOG00000035819)	POU3F2 (ENSCPOG00000003168)	MMS22L (ENSCPOG00000039717)	KLHL32 (ENSCPOG00000011948)	NDUFAF4 (ENSCPOG00000031112)	GPR63 (ENSCPOG00000005050)	FHL5 (ENSCPOG00000002157)	UFL1 (ENSCPOG00000006956)	FUT9 (ENSCPOG00000003693)	MANEA (ENSCPOG00000035608)	EPHA7 (ENSCPOG00000003600)	MAP3K7 (ENSCPOG00000008242)	BACH2 (ENSCPOG00000030579)	GJA10 (ENSCPOG00000009251) ##17
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000036411	ENSHGLG00000001581 #32	KLHL34 (ENSHGLG00000020474)	ENSHGLG00000034421	SMPX (ENSHGLG00000050435) #33	ENSHGLG00000046622 #35	MBTPS2 (ENSHGLG00000001714) #34	ENSHGLG00000001773 #36	PHEX (ENSHGLG00000003219) #37	ENSHGLG00000003413	ENSHGLG00000033146	ENSHGLG00000020425	ENSHGLG00000000563	ENSHGLG00000050318	ENSHGLG00000044116	ENSHGLG00000000543 #22	ENSHGLG00000020000	ENSHGLG00000000584 #23	ENSHGLG00000000866 #24	ENSHGLG00000038256	BCLAF3 (ENSHGLG00000001058)	MAP7D2 (ENSHGLG00000001155) #26	ENSHGLG00000034312 #28	ENSHGLG00000001399 #29	ENSHGLG00000001460	ENSHGLG00000015862 #21	PHKA2 (ENSHGLG00000001760) #20	ENSHGLG00000001092	PPEF1 (ENSHGLG00000001185) #19	RS1 (ENSHGLG00000001057) #18	CDKL5 (ENSHGLG00000001743) #16
Sciuridae	ANCESTRAL SPECIES	28	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Marmotini	ANCESTRAL SPECIES	58	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00940000153648.a.f	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	183																ENSMMMG00000004554 #22	ENSMMMG00000004548	ENSMMMG00000004540
Alpin marmot	MODERN SPECIES	21	S100G (ENSMMMG00000005431) #8	SYAP1 (ENSMMMG00000005440) #9	TXLNG (ENSMMMG00000005463) #10	RBBP7 (ENSMMMG00000005531) #11	REPS2 (ENSMMMG00000005603) #12	NHS (ENSMMMG00000005679) #13	ENSMMMG00000006065	RAI2 (ENSMMMG00000006069) #14	SCML2 (ENSMMMG00000006071)	ENSMMMG00000006089	CDKL5 (ENSMMMG00000006110) #16	RS1 (ENSMMMG00000006144) #18	PPEF1 (ENSMMMG00000006165) #19	PHKA2 (ENSMMMG00000006185) #20	ADGRG2 (ENSMMMG00000006314) #21	ENSMMMG00000007196 #22	MAP3K15 (ENSMMMG00000007247) #23	SH3KBP1 (ENSMMMG00000007298) #24	ENSMMMG00000007426	BCLAF3 (ENSMMMG00000007465)	ENSMMMG00000007500	MAP7D2 (ENSMMMG00000007516) #26	EIF1AX (ENSMMMG00000007975) #28	RPS6KA3 (ENSMMMG00000008009) #29	CNKSR2 (ENSMMMG00000008093) #32	KLHL34 (ENSMMMG00000008160)	SMPX (ENSMMMG00000008177) #33	MBTPS2 (ENSMMMG00000008190) #34	ENSMMMG00000008211	ENSMMMG00000008215	SMS (ENSMMMG00000008225) #36
Marmotini_b	ANCESTRAL SPECIES	69	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00940000153648.a.f	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256.j #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Squirrel	MODERN SPECIES	444										ENSSTOG00000013450	CDKL5 (ENSSTOG00000014545) #16	RS1 (ENSSTOG00000014568) #18	PPEF1 (ENSSTOG00000005660) #19	PHKA2 (ENSSTOG00000013911) #20	ADGRG2 (ENSSTOG00000013926) #21	PDHA1 (ENSSTOG00000015433) #22	MAP3K15 (ENSSTOG00000027298) #23
Arctic ground squirrel	MODERN SPECIES	319													PHKA2 (ENSUPAG00010017499) #20	ADGRG2 (ENSUPAG00010016925) #21	ENSUPAG00010016903	PDHA1 (ENSUPAG00010016887) #22	MAP3K15 (ENSUPAG00010016860) #23	SH3KBP1 (ENSUPAG00010016531) #24	BCLAF3 (ENSUPAG00010016497)	ENSUPAG00010016489	MAP7D2 (ENSUPAG00010016279) #26	ENSUPAG00010016262 #28	RPS6KA3 (ENSUPAG00010016233) #29
Eurasian red squirrel	MODERN SPECIES	156	RBBP7 (ENSSVLG00005025916) #11	REPS2 (ENSSVLG00005025910) #12	ENSSVLG00005025908	ENSSVLG00005025906	NHS (ENSSVLG00005025902) #13	ENSSVLG00005025897	RAI2 (ENSSVLG00005025894) #14	ENSSVLG00005025889	SCML2 (ENSSVLG00005025874)	CDKL5 (ENSSVLG00005025859) #16	RS1 (ENSSVLG00005025848) #18	PPEF1 (ENSSVLG00005025839) #19	PHKA2 (ENSSVLG00005025821) #20	ADGRG2 (ENSSVLG00005025609) #21	ENSSVLG00005025413	PDHA1 (ENSSVLG00005025396) #22	MAP3K15 (ENSSVLG00005025353) #23	SH3KBP1 (ENSSVLG00005025277) #24	BCLAF3 (ENSSVLG00005025243)	ENSSVLG00005025223	ENSSVLG00005025208	MAP7D2 (ENSSVLG00005025072) #26	ENSSVLG00005024989 #28	RPS6KA3 (ENSSVLG00005024949) #29	CNKSR2 (ENSSVLG00005023957) #32	KLHL34 (ENSSVLG00005023744)	SMPX (ENSSVLG00005023721) #33	MBTPS2 (ENSSVLG00005023689) #34	ENSSVLG00005023659	ENSSVLG00005023650	SMS (ENSSVLG00005023626) #36
Lagomorpha	ANCESTRAL SPECIES	49	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291	ENSGT00940000153430.a.a
Rabbit	MODERN SPECIES	1401	ENSOCUG00000000681 #10	ENSOCUG00000000683 #11	REPS2 (ENSOCUG00000014665) #12	ENSOCUG00000031876	NHS (ENSOCUG00000013436) #13	ENSOCUG00000028121	ENSOCUG00000021853	RAI2 (ENSOCUG00000026517) #14	ENSOCUG00000013622 #15	SCML2 (ENSOCUG00000007351)	CDKL5 (ENSOCUG00000010775) #16	RS1 (ENSOCUG00000010796) #18	PHKA2 (ENSOCUG00000013782) #20	PPEF1 (ENSOCUG00000010801) #19	ADGRG2 (ENSOCUG00000007324) #21	PDHA1 (ENSOCUG00000014748) #22	MAP3K15 (ENSOCUG00000014758) #23	SH3KBP1 (ENSOCUG00000006268) #24	BCLAF3 (ENSOCUG00000015294)	MAP7D2 (ENSOCUG00000016736) #26	RPS6KA3 (ENSOCUG00000025948) #29	ENSOCUG00000027568	CNKSR2 (ENSOCUG00000014660) #32	KLHL34 (ENSOCUG00000014678)	SMPX (ENSOCUG00000001849) #33	MBTPS2 (ENSOCUG00000016386) #34	SMS (ENSOCUG00000006016) #36	PHEX (ENSOCUG00000006020) #37	ENSOCUG00000004437	PTCHD1 (ENSOCUG00000014375)	ENSOCUG00000032925
Pika	MODERN SPECIES	1123																PDHA1 (ENSOPRG00000016091) #22
Tree shrew	MODERN SPECIES	1409																PDHA1 (ENSTBEG00000014313) #22	MAP3K15 (ENSTBEG00000015203) #23	SH3KBP1 (ENSTBEG00000015837) #24
Primates	ANCESTRAL SPECIES	19	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Haplorrhini	ANCESTRAL SPECIES	18	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	28	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000154152.d.a.b.b	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.a #22	ENSGT00940000159562 #23	ENSGT00940000155886.g #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00390000003791.g.b	ENSGT00940000157080	ENSGT00940000153430.a.a
Cebidae	ANCESTRAL SPECIES	18	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000154152.d.a.b.b	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.a #22	ENSGT00940000159562 #23	ENSGT00940000155886.g #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00390000003791.g.b	ENSGT00940000157080	ENSGT00940000153430.a.a
Marmoset	MODERN SPECIES	78	ENSCJAG00000080054	NHS (ENSCJAG00000004660) #13	ENSCJAG00000078610	ENSCJAG00000082727	ENSCJAG00000023313	RAI2 (ENSCJAG00000003685) #14	SCML2 (ENSCJAG00000005875)	CDKL5 (ENSCJAG00000005834) #16	RS1 (ENSCJAG00000005829) #18	PPEF1 (ENSCJAG00000005798) #19	PHKA2 (ENSCJAG00000005668) #20	ENSCJAG00000082522	ADGRG2 (ENSCJAG00000005571) #21	ENSCJAG00000072791	ENSCJAG00000073410	ENSCJAG00000005496 #22	ENSCJAG00000005459 #23	BCLAF3 (ENSCJAG00000045691)	ENSCJAG00000022320	ENSCJAG00000079762	MAP7D2 (ENSCJAG00000005383) #26	RPS6KA3 (ENSCJAG00000005239) #29	ENSCJAG00000005365	ENSCJAG00000073658	CNKSR2 (ENSCJAG00000005220) #32	KLHL34 (ENSCJAG00000041270)	SMPX (ENSCJAG00000005203) #33	MBTPS2 (ENSCJAG00000046733) #34	SMS (ENSCJAG00000033933) #36	PHEX (ENSCJAG00000005121) #37	ENSCJAG00000072524
Cebidae_a	ANCESTRAL SPECIES	36	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C.eb.a #11	ENSGT00940000154152.d.a.b.b	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154174.s.a.b	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.a #22	ENSGT00940000159562 #23	ENSGT00940000155886.g #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00390000003791.g.b	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Bolivian squirrel monkey	MODERN SPECIES	51		ENSSBOG00000036156 #10	RBBP7 (ENSSBOG00000033728) #11	ENSSBOG00000030543	REPS2 (ENSSBOG00000018047) #12	NHS (ENSSBOG00000032082) #13	SCML1 (ENSSBOG00000025279)	ENSSBOG00000032775	BEND2 (ENSSBOG00000034571)	SCML2 (ENSSBOG00000023475)	CDKL5 (ENSSBOG00000034927) #16	RS1 (ENSSBOG00000022074) #18	PPEF1 (ENSSBOG00000025564) #19	PHKA2 (ENSSBOG00000028848) #20	ADGRG2 (ENSSBOG00000036029) #21	PDHA1 (ENSSBOG00000021023) #22	MAP3K15 (ENSSBOG00000023444) #23	ENSSBOG00000026951	ENSSBOG00000036210 #24	BCLAF3 (ENSSBOG00000031024)	MAP7D2 (ENSSBOG00000029797) #26	ENSSBOG00000031558 #28	ENSSBOG00000029635	RPS6KA3 (ENSSBOG00000034830) #29	ENSSBOG00000018382	CNKSR2 (ENSSBOG00000029741) #32	SMPX (ENSSBOG00000033495) #33	MBTPS2 (ENSSBOG00000029363) #34	SMS (ENSSBOG00000024222) #36	ENSSBOG00000000154	PHEX (ENSSBOG00000035899) #37
Capuchin	MODERN SPECIES	128				NHS (ENSCCAG00000015439) #13	SCML1 (ENSCCAG00000003357)	ENSCCAG00000021224	BEND2 (ENSCCAG00000028740)	SCML2 (ENSCCAG00000029741)	CDKL5 (ENSCCAG00000028839) #16	RS1 (ENSCCAG00000037547) #18	PPEF1 (ENSCCAG00000018308) #19	PHKA2 (ENSCCAG00000037761) #20	ADGRG2 (ENSCCAG00000021576) #21	ENSCCAG00000033194	ENSCCAG00000025967	ENSCCAG00000020724 #22	MAP3K15 (ENSCCAG00000019733) #23	ENSCCAG00000024335 #24	BCLAF3 (ENSCCAG00000021782)	MAP7D2 (ENSCCAG00000034873) #26	EIF1AX (ENSCCAG00000020517) #28	RPS6KA3 (ENSCCAG00000036661) #29	ENSCCAG00000026463	CNKSR2 (ENSCCAG00000029076) #32	ENSCCAG00000031773	SMPX (ENSCCAG00000028916) #33	ENSCCAG00000034966	MBTPS2 (ENSCCAG00000030619) #34	SMS (ENSCCAG00000038102) #36	PHEX (ENSCCAG00000021705) #37	ENSCCAG00000024171
Mas night monkey	MODERN SPECIES	814	RBBP7 (ENSANAG00000037598) #11	ENSANAG00000020204	ENSANAG00000020664	ENSANAG00000022723	REPS2 (ENSANAG00000031037) #12	NHS (ENSANAG00000033727) #13	SCML1 (ENSANAG00000021893)	ENSANAG00000019386	ENSANAG00000037962	SCML2 (ENSANAG00000020966)	CDKL5 (ENSANAG00000034696) #16	RS1 (ENSANAG00000029033) #18	PPEF1 (ENSANAG00000023404) #19	PHKA2 (ENSANAG00000038435) #20	ADGRG2 (ENSANAG00000034597) #21	PDHA1 (ENSANAG00000030855) #22	MAP3K15 (ENSANAG00000034023) #23	ENSANAG00000030233	ENSANAG00000034832 #24	ENSANAG00000026646	MAP7D2 (ENSANAG00000037417) #26	ENSANAG00000030856 #28	ENSANAG00000025820	RPS6KA3 (ENSANAG00000026591) #29	ENSANAG00000000067	ENSANAG00000019923	CNKSR2 (ENSANAG00000030385) #32	KLHL34 (ENSANAG00000020210)	SMPX (ENSANAG00000035900) #33	ENSANAG00000034743	MBTPS2 (ENSANAG00000022738) #34
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00530000063174.a.i.b #22
Cebidae	ANCESTRAL SPECIES	33	ENSGT00940000157289.a.a.b	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a	ENSGT00390000018605	ENSGT00940000157533	ENSGT00400000022103.a	ENSGT00390000001805	ENSGT00940000157075	ENSGT00940000154843.F	ENSGT00390000004886	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00530000063174.a.i.b #22	ENSGT00940000157040	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263	ENSGT00940000154772.r	ENSGT00940000156581	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT01050000244838.C.a	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158284
Cebidae_a	ANCESTRAL SPECIES	42	ENSGT00940000157289.a.a.b	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a	ENSGT00390000018605	ENSGT00940000157533	ENSGT00400000022103.a	ENSGT00390000001805	ENSGT00940000157075	ENSGT00940000154843.F	ENSGT00390000004886	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00530000063174.a.i.b #22	ENSGT00940000157040	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a	ENSGT00390000001231.s.a.c	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263	ENSGT00940000154772.r	ENSGT00940000156581	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT01050000244838.C.a	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424
Capuchin	MODERN SPECIES	43		NRN1 (ENSCCAG00000024735)	F13A1 (ENSCCAG00000036141)	LY86 (ENSCCAG00000020400)	RREB1 (ENSCCAG00000021905)	SSR1 (ENSCCAG00000030293)	CAGE1 (ENSCCAG00000037882)	RIOK1 (ENSCCAG00000024061)	ENSCCAG00000033486	DSP (ENSCCAG00000002153)	SNRNP48 (ENSCCAG00000035652)	BMP6 (ENSCCAG00000024255)	TXNDC5 (ENSCCAG00000022735)	BLOC1S5 (ENSCCAG00000023842)	ENSCCAG00000031071	ENSCCAG00000035126 #22	SLC35B3 (ENSCCAG00000026344)	ENSCCAG00000026536	ENSCCAG00000026702	TFAP2A (ENSCCAG00000036532)	ENSCCAG00000029494	ENSCCAG00000024728	GCNT2 (ENSCCAG00000038039)	C6orf52 (ENSCCAG00000025777)	PAK1IP1 (ENSCCAG00000030045)	TMEM14C (ENSCCAG00000030819)	MAK (ENSCCAG00000028841)	GCM2 (ENSCCAG00000029665)	SYCP2L (ENSCCAG00000027217)	ELOVL2 (ENSCCAG00000020667)	SMIM13 (ENSCCAG00000001111)
Marmoset	MODERN SPECIES	16	RREB1 (ENSCJAG00000021358)	SSR1 (ENSCJAG00000044370)	CAGE1 (ENSCJAG00000021351)	RIOK1 (ENSCJAG00000042960)	DSP (ENSCJAG00000021333)	SNRNP48 (ENSCJAG00000021330)	ENSCJAG00000077015	ENSCJAG00000074889	ENSCJAG00000056342	BMP6 (ENSCJAG00000021326)	TXNDC5 (ENSCJAG00000021322)	ENSCJAG00000069775	ENSCJAG00000069672	BLOC1S5 (ENSCJAG00000010580)	EEF1E1 (ENSCJAG00000079478)	ENSCJAG00000080871 #22	SLC35B3 (ENSCJAG00000021320)	ENSCJAG00000083524	ENSCJAG00000073361	ENSCJAG00000071644	ENSCJAG00000072059	ENSCJAG00000085139	ENSCJAG00000072812	ENSCJAG00000082762	TFAP2A (ENSCJAG00000021312)	ENSCJAG00000021709	ENSCJAG00000069812	ENSCJAG00000075197	ENSCJAG00000076215	ENSCJAG00000001070	ENSCJAG00000076671
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00910000148115	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Hominoidea	ANCESTRAL SPECIES	16	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00910000148115	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000167221	ENSGT00940000157080	ENSGT00940000153430.a.a
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00910000148115	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.pb #36	ENSGT00940000157313 #37	ENSGT00940000167221	ENSGT00940000157080	ENSGT00940000153430.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00910000148115	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.pb #36	ENSGT00940000157313 #37	ENSGT00940000167221	ENSGT00940000157080	ENSGT00940000153430.a.a
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	523	SYAP1 (ENSGGOG00000001309) #9	TXLNG (ENSGGOG00000002388) #10	ENSGGOG00000044025	REPS2 (ENSGGOG00000016013) #12	ENSGGOG00000022186	NHS (ENSGGOG00000000704) #13	SCML1 (ENSGGOG00000003874)	BEND2 (ENSGGOG00000003458)	SCML2 (ENSGGOG00000015959)	CDKL5 (ENSGGOG00000010796) #16	RS1 (ENSGGOG00000023949) #18	PPEF1 (ENSGGOG00000003393) #19	PHKA2 (ENSGGOG00000003407) #20	ADGRG2 (ENSGGOG00000003424) #21	ENSGGOG00000040627	ENSGGOG00000013574 #22	MAP3K15 (ENSGGOG00000008317) #23	SH3KBP1 (ENSGGOG00000008333) #24	BCLAF3 (ENSGGOG00000009453)	MAP7D2 (ENSGGOG00000007760) #26	ENSGGOG00000012186 #28	RPS6KA3 (ENSGGOG00000008837) #29	CNKSR2 (ENSGGOG00000013768) #32	KLHL34 (ENSGGOG00000002780)	SMPX (ENSGGOG00000004353) #33	MBTPS2 (ENSGGOG00000012064) #34	ENSGGOG00000003123 #36	ENSGGOG00000003961 #37	CBLL2 (ENSGGOG00000034821)	ENSGGOG00000026912	ENSGGOG00000036181
Gorilla	MODERN SPECIES	122																ENSGGOG00000041347 #22
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000167584	ENSGT00870000136506.pb #36	ENSGT00940000157313 #37	ENSGT00940000167221	ENSGT00940000157080
Pan	ANCESTRAL SPECIES	6	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00940000154152.d.a.b	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000167584	ENSGT00870000136506.pb #36	ENSGT00940000157313 #37	ENSGT00940000166413	ENSGT00940000167221
Bonobo	MODERN SPECIES	369	TXLNG (ENSPPAG00000034208) #10	RBBP7 (ENSPPAG00000036647) #11	REPS2 (ENSPPAG00000037795) #12	ENSPPAG00000031475	ENSPPAG00000004504	NHS (ENSPPAG00000031794) #13	SCML1 (ENSPPAG00000031177)	BEND2 (ENSPPAG00000032642)	SCML2 (ENSPPAG00000039952)	CDKL5 (ENSPPAG00000027668) #16	RS1 (ENSPPAG00000040996) #18	PPEF1 (ENSPPAG00000027881) #19	ENSPPAG00000027509	PHKA2 (ENSPPAG00000036527) #20	ADGRG2 (ENSPPAG00000044060) #21	PDHA1 (ENSPPAG00000032993) #22	MAP3K15 (ENSPPAG00000039708) #23	SH3KBP1 (ENSPPAG00000037769) #24	BCLAF3 (ENSPPAG00000040123)	MAP7D2 (ENSPPAG00000040804) #26	EIF1AX (ENSPPAG00000033962) #28	RPS6KA3 (ENSPPAG00000029748) #29	CNKSR2 (ENSPPAG00000037182) #32	KLHL34 (ENSPPAG00000025617)	SMPX (ENSPPAG00000030194) #33	MBTPS2 (ENSPPAG00000033207) #34	YY2 (ENSPPAG00000033052)	ENSPPAG00000035805 #36	PHEX (ENSPPAG00000012368) #37	CBLL2 (ENSPPAG00000006152)	ENSPPAG00000031560
Chimpanzee	MODERN SPECIES	972	TXLNG (ENSPTRG00000021701) #10	RBBP7 (ENSPTRG00000021702) #11	REPS2 (ENSPTRG00000021703) #12	ENSPTRG00000052150	ENSPTRG00000047191	NHS (ENSPTRG00000021705) #13	SCML1 (ENSPTRG00000021706)	BEND2 (ENSPTRG00000021708)	SCML2 (ENSPTRG00000021710)	CDKL5 (ENSPTRG00000021711) #16	RS1 (ENSPTRG00000021713) #18	PPEF1 (ENSPTRG00000021714) #19	ENSPTRG00000046843	PHKA2 (ENSPTRG00000021715) #20	ADGRG2 (ENSPTRG00000021716) #21	PDHA1 (ENSPTRG00000021717) #22	MAP3K15 (ENSPTRG00000022605) #23	SH3KBP1 (ENSPTRG00000048773) #24	BCLAF3 (ENSPTRG00000021725)	MAP7D2 (ENSPTRG00000021727) #26	ENSPTRG00000021728 #28	RPS6KA3 (ENSPTRG00000052293) #29	CNKSR2 (ENSPTRG00000021731) #32	KLHL34 (ENSPTRG00000021733)	SMPX (ENSPTRG00000047975) #33	MBTPS2 (ENSPTRG00000021735) #34	ENSPTRG00000044028 #36	PHEX (ENSPTRG00000021737) #37	CBLL2 (ENSPTRG00000028314)	ENSPTRG00000047608	DDX53 (ENSPTRG00000028313)
Human	MODERN SPECIES	1827	S100G (ENSG00000169906) #8	SYAP1 (ENSG00000169895) #9	TXLNG (ENSG00000086712) #10	RBBP7 (ENSG00000102054) #11	REPS2 (ENSG00000169891) #12	NHS (ENSG00000188158) #13	SCML1 (ENSG00000047634)	RAI2 (ENSG00000131831) #14	BEND2 (ENSG00000177324)	SCML2 (ENSG00000102098)	CDKL5 (ENSG00000008086) #16	RS1 (ENSG00000102104) #18	PPEF1 (ENSG00000086717) #19	PHKA2 (ENSG00000044446) #20	ADGRG2 (ENSG00000173698) #21	PDHA1 (ENSG00000131828) #22	MAP3K15 (ENSG00000180815) #23	SH3KBP1 (ENSG00000147010) #24	BCLAF3 (ENSG00000173681)	MAP7D2 (ENSG00000184368) #26	EIF1AX (ENSG00000173674) #28	RPS6KA3 (ENSG00000177189) #29	CNKSR2 (ENSG00000149970) #32	KLHL34 (ENSG00000185915)	SMPX (ENSG00000091482) #33	MBTPS2 (ENSG00000012174) #34	YY2 (ENSG00000230797)	SMS (ENSG00000102172) #36	PHEX (ENSG00000102174) #37	CBLL2 (ENSG00000175809)	DDX53 (ENSG00000184735)
Orangutan	MODERN SPECIES	242	TXLNG (ENSPPYG00000020157) #10	RBBP7 (ENSPPYG00000020158) #11	REPS2 (ENSPPYG00000020159) #12	ENSPPYG00000020160	NHS (ENSPPYG00000020161) #13	SCML1 (ENSPPYG00000020162)	RAI2 (ENSPPYG00000020163) #14	BEND2 (ENSPPYG00000020164)	SCML2 (ENSPPYG00000020165)	CDKL5 (ENSPPYG00000020166) #16	RS1 (ENSPPYG00000020167) #18	PPEF1 (ENSPPYG00000020168) #19	ENSPPYG00000038507	PHKA2 (ENSPPYG00000020169) #20	ADGRG2 (ENSPPYG00000020170) #21	PDHA1 (ENSPPYG00000020171) #22	MAP3K15 (ENSPPYG00000020172) #23	SH3KBP1 (ENSPPYG00000020173) #24	BCLAF3 (ENSPPYG00000020174)	MAP7D2 (ENSPPYG00000020175) #26	EIF1AX (ENSPPYG00000038921) #28	RPS6KA3 (ENSPPYG00000020177) #29	CNKSR2 (ENSPPYG00000020178) #32	KLHL34 (ENSPPYG00000020179)	SMPX (ENSPPYG00000020180) #33	MBTPS2 (ENSPPYG00000020181) #34	SMS (ENSPPYG00000020182) #36	PHEX (ENSPPYG00000020183) #37	CBLL2 (ENSPPYG00000020184)	ENSPPYG00000036724	DDX53 (ENSPPYG00000020185)
Gibbon	MODERN SPECIES	449	ENSNLEG00000032743	RBBP7 (ENSNLEG00000009557) #11	REPS2 (ENSNLEG00000009591) #12	ENSNLEG00000029607	NHS (ENSNLEG00000009610) #13	SCML1 (ENSNLEG00000009621)	BEND2 (ENSNLEG00000009644)	SCML2 (ENSNLEG00000009648)	ENSNLEG00000027405	CDKL5 (ENSNLEG00000009674) #16	RS1 (ENSNLEG00000009691) #18	PPEF1 (ENSNLEG00000009696) #19	ENSNLEG00000029919	PHKA2 (ENSNLEG00000009732) #20	ADGRG2 (ENSNLEG00000009745) #21	PDHA1 (ENSNLEG00000009805) #22	MAP3K15 (ENSNLEG00000009849) #23	SH3KBP1 (ENSNLEG00000009860) #24	BCLAF3 (ENSNLEG00000009878)	ENSNLEG00000009882	MAP7D2 (ENSNLEG00000009884) #26	ENSNLEG00000009913 #28	RPS6KA3 (ENSNLEG00000009925) #29	CNKSR2 (ENSNLEG00000009933) #32	SMPX (ENSNLEG00000009938) #33	MBTPS2 (ENSNLEG00000009943) #34	SMS (ENSNLEG00000009955) #36	PHEX (ENSNLEG00000009980) #37	ENSNLEG00000018743	ENSNLEG00000027485	PTCHD1 (ENSNLEG00000010004)
Cercopithecidae	ANCESTRAL SPECIES	27	ENSGT00940000154748.C #11	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00910000148115	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000154748.C #11	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00940000154185.l.a.a.b	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Cercopithecinae_a	DUPLICATION
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00940000154185.l.a.a.b	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.b.b.a.a.b.a.a.a.b.b.a.a.b.b.a.a.b.a.b.b.a	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.e #22	ENSGT00940000159562.e.a #23	ENSGT00940000159562.e.b #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a
Macaca	ANCESTRAL SPECIES	29	ENSGT00940000154748.C.cb #11	ENSGT00940000158080 #12	ENSGT00940000154185.l.a.a.b	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.b.b.a.a.b.a.a.a.b.b.a.a.b.b.a.a.b.a.b.b.a	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.e #22	ENSGT00940000159562.e.b #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Pig-tailed macaque	MODERN SPECIES	549	SYAP1 (ENSMNEG00000038782) #9	TXLNG (ENSMNEG00000040658) #10	RBBP7 (ENSMNEG00000031240) #11	REPS2 (ENSMNEG00000028017) #12	ENSMNEG00000022446	NHS (ENSMNEG00000032198) #13	SCML1 (ENSMNEG00000032587)	BEND2 (ENSMNEG00000036925)	SCML2 (ENSMNEG00000011431)	CDKL5 (ENSMNEG00000004730) #16	RS1 (ENSMNEG00000043209) #18	PPEF1 (ENSMNEG00000034590) #19	ENSMNEG00000028824	PHKA2 (ENSMNEG00000039386) #20	ADGRG2 (ENSMNEG00000043949) #21	ENSMNEG00000043035 #22	MAP3K15 (ENSMNEG00000029196) #23	SH3KBP1 (ENSMNEG00000037170) #24	ENSMNEG00000039258	BCLAF3 (ENSMNEG00000044107)	MAP7D2 (ENSMNEG00000042827) #26	EIF1AX (ENSMNEG00000035197) #28	RPS6KA3 (ENSMNEG00000013736) #29	CNKSR2 (ENSMNEG00000033243) #32	KLHL34 (ENSMNEG00000004752)	SMPX (ENSMNEG00000044214) #33	MBTPS2 (ENSMNEG00000018031) #34	ENSMNEG00000036966	SMS (ENSMNEG00000030826) #36	PHEX (ENSMNEG00000030561) #37	PTCHD1 (ENSMNEG00000031256)
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00940000154748.C.cb #11	ENSGT00940000158080 #12	ENSGT00910000148084	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.b.b.a.a.b.a.a.a.b.b.a.a.b.b.a.a.b.a.b.b.a	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000164688	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.e #22	ENSGT00940000159562.e.b #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000164709.a.b.b.a.b.b.b.a.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT01050000244986.b.b.d.a.b	ENSGT00940000167221
Crab-eating macaque	MODERN SPECIES	175	ENSMFAG00000045438	NHS (ENSMFAG00000033586) #13	ENSMFAG00000057357	ENSMFAG00000057834	SCML1 (ENSMFAG00000038986)	RAI2 (ENSMFAG00000001310) #14	ENSMFAG00000065282	BEND2 (ENSMFAG00000036840)	SCML2 (ENSMFAG00000042495)	CDKL5 (ENSMFAG00000030921) #16	RS1 (ENSMFAG00000003687) #18	PPEF1 (ENSMFAG00000032152) #19	ENSMFAG00000034482	PHKA2 (ENSMFAG00000044106) #20	ADGRG2 (ENSMFAG00000001073) #21	PDHA1 (ENSMFAG00000043170) #22	ENSMFAG00000058383 #23	ENSMFAG00000000869 #23	SH3KBP1 (ENSMFAG00000002962) #24	ENSMFAG00000021756	BCLAF3 (ENSMFAG00000003230)	MAP7D2 (ENSMFAG00000055804) #26	ENSMFAG00000060557 #28	RPS6KA3 (ENSMFAG00000045085) #29	ENSMFAG00000061291	ENSMFAG00000052941	CNKSR2 (ENSMFAG00000037951) #32	SMPX (ENSMFAG00000040826) #33	MBTPS2 (ENSMFAG00000042182) #34	SMS (ENSMFAG00000039117) #36	PHEX (ENSMFAG00000045722) #37
Rhesus	MODERN SPECIES	327	TXLNG (ENSMMUG00000016237) #10	RBBP7 (ENSMMUG00000016238) #11	REPS2 (ENSMMUG00000010598) #12	ENSMMUG00000058988	NHS (ENSMMUG00000012894) #13	ENSMMUG00000060776	SCML1 (ENSMMUG00000012899)	RAI2 (ENSMMUG00000001433) #14	BEND2 (ENSMMUG00000019969)	SCML2 (ENSMMUG00000005084)	CDKL5 (ENSMMUG00000005063) #16	RS1 (ENSMMUG00000005065) #18	PPEF1 (ENSMMUG00000005066) #19	PHKA2 (ENSMMUG00000020513) #20	ADGRG2 (ENSMMUG00000020515) #21	PDHA1 (ENSMMUG00000017336) #22	MAP3K15 (ENSMMUG00000061236) #23	SH3KBP1 (ENSMMUG00000004744) #24	ENSMMUG00000010727	BCLAF3 (ENSMMUG00000004745)	MAP7D2 (ENSMMUG00000000192) #26	EIF1AX (ENSMMUG00000051148) #28	RPS6KA3 (ENSMMUG00000002134) #29	ENSMMUG00000063057	CNKSR2 (ENSMMUG00000007500) #32	KLHL34 (ENSMMUG00000007501)	SMPX (ENSMMUG00000057558) #33	YY2 (ENSMMUG00000022467)	ENSMMUG00000051932	SMS (ENSMMUG00000020392) #36	PHEX (ENSMMUG00000023589) #37
Cercopithecinae_b	ANCESTRAL SPECIES	35	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C.cb #11	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.e #22	ENSGT00940000159562.f #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT01050000244986.b.b.d.a.b	ENSGT00940000167221
Olive baboon	MODERN SPECIES	792	ENSPANG00000046631	ENSPANG00000008870	ENSPANG00000050113	ENSPANG00000047189	NHS (ENSPANG00000007897) #13	SCML1 (ENSPANG00000010972)	RAI2 (ENSPANG00000015463) #14	SCML2 (ENSPANG00000018991)	ENSPANG00000041187	CDKL5 (ENSPANG00000004460) #16	ENSPANG00000035243	PPEF1 (ENSPANG00000010228) #19	ENSPANG00000029606	PHKA2 (ENSPANG00000016122) #20	ADGRG2 (ENSPANG00000004239) #21	ENSPANG00000035301 #22	MAP3K15 (ENSPANG00000007384) #23	SH3KBP1 (ENSPANG00000006736) #24	BCLAF3 (ENSPANG00000004509)	MAP7D2 (ENSPANG00000019661) #26	EIF1AX (ENSPANG00000030224) #28	RPS6KA3 (ENSPANG00000016330) #29	ENSPANG00000006351	ENSPANG00000029508	CNKSR2 (ENSPANG00000011941) #32	KLHL34 (ENSPANG00000012353)	SMPX (ENSPANG00000005741) #33	ENSPANG00000050152	MBTPS2 (ENSPANG00000024280) #34	SMS (ENSPANG00000003155) #36	PHEX (ENSPANG00000010105) #37
Cercopithecinae_d	ANCESTRAL SPECIES	51	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C.cb #11	ENSGT00940000154152.d.a.b	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164589	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00940000167769	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i.e #22	ENSGT00940000159562.f #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00510000048066 #34	ENSGT00870000136506.ob.b #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a
Sooty mangabey	MODERN SPECIES	448	SYAP1 (ENSCATG00000044882) #9	TXLNG (ENSCATG00000032410) #10	RBBP7 (ENSCATG00000042741) #11	ENSCATG00000037187	REPS2 (ENSCATG00000041359) #12	NHS (ENSCATG00000033217) #13	SCML1 (ENSCATG00000006222)	BEND2 (ENSCATG00000036336)	SCML2 (ENSCATG00000038994)	CDKL5 (ENSCATG00000041616) #16	RS1 (ENSCATG00000029796) #18	PPEF1 (ENSCATG00000043035) #19	ENSCATG00000037972	PHKA2 (ENSCATG00000044694) #20	ADGRG2 (ENSCATG00000035439) #21	PDHA1 (ENSCATG00000044567) #22	MAP3K15 (ENSCATG00000024304) #23	SH3KBP1 (ENSCATG00000034119) #24	BCLAF3 (ENSCATG00000039065)	MAP7D2 (ENSCATG00000042697) #26	EIF1AX (ENSCATG00000033237) #28	RPS6KA3 (ENSCATG00000036143) #29	ENSCATG00000035316	CNKSR2 (ENSCATG00000035326) #32	KLHL34 (ENSCATG00000014878)	SMPX (ENSCATG00000043293) #33	ENSCATG00000037334	MBTPS2 (ENSCATG00000031542) #34	SMS (ENSCATG00000032661) #36	PHEX (ENSCATG00000031574) #37	CBLL2 (ENSCATG00000014814)
Drill	MODERN SPECIES	1190									SCML2 (ENSMLEG00000007077)	CDKL5 (ENSMLEG00000038004) #16	RS1 (ENSMLEG00000024203) #18	PPEF1 (ENSMLEG00000035187) #19	ENSMLEG00000025963	PHKA2 (ENSMLEG00000029623) #20	ADGRG2 (ENSMLEG00000030833) #21	ENSMLEG00000033588 #22	MAP3K15 (ENSMLEG00000028673) #23	SH3KBP1 (ENSMLEG00000038375) #24	BCLAF3 (ENSMLEG00000016996)	MAP7D2 (ENSMLEG00000018058) #26	EIF1AX (ENSMLEG00000031392) #28	RPS6KA3 (ENSMLEG00000034063) #29
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00530000063174.a.i.f #22
Macaca	ANCESTRAL SPECIES	17	ENSGT00940000154864.b	ENSGT00940000155564	ENSGT00940000156568	ENSGT00950000183166.a.a.a.b	ENSGT00910000144152.a.b.t	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b	ENSGT00390000012785	ENSGT00390000018199.b.b.a	ENSGT00390000014001.a	ENSGT00940000157837	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00530000063174.a.i.f #22	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.w	ENSGT00940000156467	ENSGT00940000158732	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529	ENSGT00390000016883	ENSGT00390000008178	ENSGT00390000004911	ENSGT00940000157344	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956
Pig-tailed macaque	MODERN SPECIES	341	EML6 (ENSMNEG00000042682)	RTN4 (ENSMNEG00000029510)	CLHC1 (ENSMNEG00000027284)	RPS27A (ENSMNEG00000037303)	MTIF2 (ENSMNEG00000034768)	ENSMNEG00000038538	CCDC88A (ENSMNEG00000038308)	CFAP36 (ENSMNEG00000039806)	PPP4R3B (ENSMNEG00000030876)	PNPT1 (ENSMNEG00000038589)	EFEMP1 (ENSMNEG00000043412)	ENSMNEG00000004015	CCDC85A (ENSMNEG00000041770)	VRK2 (ENSMNEG00000042551)	FANCL (ENSMNEG00000028810)	ENSMNEG00000044442 #22	BCL11A (ENSMNEG00000040327)	ENSMNEG00000036604	ENSMNEG00000041584	PAPOLG (ENSMNEG00000035939)	REL (ENSMNEG00000042843)	PUS10 (ENSMNEG00000043877)	PEX13 (ENSMNEG00000030840)	SANBR (ENSMNEG00000041924)	ENSMNEG00000033482	C2orf74 (ENSMNEG00000028498)	ENSMNEG00000042228	ENSMNEG00000036948	ENSMNEG00000036676	USP34 (ENSMNEG00000039067)	XPO1 (ENSMNEG00000030909)
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000155564	ENSGT00940000156568	ENSGT00950000183166.a.a.a.b	ENSGT00910000144152.a.b.t	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b	ENSGT00390000012785	ENSGT00390000018199.b.b.a	ENSGT00390000014001.a.b	ENSGT00940000157837	ENSGT00940000157361	ENSGT00950000182895.a.b.j.b.e.a	ENSGT00940000158042	ENSGT00390000005537	ENSGT00530000063174.a.i.f #22	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.w	ENSGT00390000008802.m.a.a	ENSGT00940000156467	ENSGT00940000158732	ENSGT00390000007529	ENSGT00390000016883	ENSGT00390000008178	ENSGT00390000004911	ENSGT00940000157344	ENSGT00940000158659	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT00940000154864.b	ENSGT00940000155564	ENSGT00940000156568	ENSGT00950000183166.a.a.a.b	ENSGT00910000144152.a.b.t	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b	ENSGT00390000012785	ENSGT00390000018199.b.b.a	ENSGT00390000014001.a.b	ENSGT00940000157837	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00530000063174.a.i.f #22	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.w	ENSGT00940000156467	ENSGT00940000158732	ENSGT00390000007529	ENSGT00390000016883	ENSGT00390000008178	ENSGT00390000004911	ENSGT00940000157344	ENSGT00940000158659	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a
Drill	MODERN SPECIES	1245														VRK2 (ENSMLEG00000032178)	FANCL (ENSMLEG00000031190)	ENSMLEG00000038186 #22	BCL11A (ENSMLEG00000035855)	ENSMLEG00000030509	PAPOLG (ENSMLEG00000039462)	ENSMLEG00000035996	REL (ENSMLEG00000009298)	ENSMLEG00000037480
Olive baboon	MODERN SPECIES	5	RPS27A (ENSPANG00000034863)	MTIF2 (ENSPANG00000014549)	ENSPANG00000000623	CCDC88A (ENSPANG00000021274)	PPP4R3B (ENSPANG00000022844)	CFAP36 (ENSPANG00000022522)	ENSPANG00000038384	ENSPANG00000031278	EFEMP1 (ENSPANG00000022521)	ENSPANG00000041504	ENSPANG00000043733	CCDC85A (ENSPANG00000016914)	ENSPANG00000010717	VRK2 (ENSPANG00000014544)	FANCL (ENSPANG00000021497)	ENSPANG00000021826 #22	BCL11A (ENSPANG00000018170)	ENSPANG00000000672	PAPOLG (ENSPANG00000014543)	REL (ENSPANG00000006148)	PUS10 (ENSPANG00000018036)	PEX13 (ENSPANG00000022181)	ENSPANG00000017323	ENSPANG00000039323	C2orf74 (ENSPANG00000035894)	ENSPANG00000016913	USP34 (ENSPANG00000025375)	XPO1 (ENSPANG00000006892)	FAM161A (ENSPANG00000010259)	CCT4 (ENSPANG00000019105)	COMMD1 (ENSPANG00000006093)
Rhinopithecus	ANCESTRAL SPECIES	500													ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00910000148115	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b.c	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29
Golden snub-nosed monkey	MODERN SPECIES	2712															ADGRG2 (ENSRROG00000031914) #21	PDHA1 (ENSRROG00000021554) #22	MAP3K15 (ENSRROG00000040875) #23	ENSRROG00000038162	SH3KBP1 (ENSRROG00000034116) #24	BCLAF3 (ENSRROG00000036962)
Black snub-nosed monkey	MODERN SPECIES	2277													PHKA2 (ENSRBIG00000038528) #20	ADGRG2 (ENSRBIG00000044766) #21	ENSRBIG00000040603	PDHA1 (ENSRBIG00000027799) #22
Tarsier	MODERN SPECIES	1277																PDHA1 (ENSTSYG00000006218) #22
Strepsirrhini	ANCESTRAL SPECIES	23	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066.b #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Bushbaby	MODERN SPECIES	166	SYAP1 (ENSOGAG00000028403) #9	TXLNG (ENSOGAG00000014991) #10	RBBP7 (ENSOGAG00000014995) #11	ENSOGAG00000000865 #12	NHS (ENSOGAG00000017089) #13	ENSOGAG00000017092	RAI2 (ENSOGAG00000017095) #14	ENSOGAG00000012713 #15	SCML2 (ENSOGAG00000012455)	ENSOGAG00000031862	CDKL5 (ENSOGAG00000002429) #16	RS1 (ENSOGAG00000002430) #18	PPEF1 (ENSOGAG00000002431) #19	PHKA2 (ENSOGAG00000002436) #20	ADGRG2 (ENSOGAG00000011733) #21	PDHA1 (ENSOGAG00000002466) #22	MAP3K15 (ENSOGAG00000002467) #23	SH3KBP1 (ENSOGAG00000002469) #24	BCLAF3 (ENSOGAG00000008168)	MAP7D2 (ENSOGAG00000008176) #26	ENSOGAG00000033040	ENSOGAG00000008182 #28	RPS6KA3 (ENSOGAG00000008184) #29	ENSOGAG00000032783	CNKSR2 (ENSOGAG00000015464) #32	KLHL34 (ENSOGAG00000027270)	SMPX (ENSOGAG00000015469) #33	MBTPS2 (ENSOGAG00000011151) #34	ENSOGAG00000010892 #36	PHEX (ENSOGAG00000010894) #37	ENSOGAG00000026282
Lemuriformes	ANCESTRAL SPECIES	48	ENSGT00940000164194	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066.b #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Mouse lemur	MODERN SPECIES	169	ENSMICG00000043954	CTPS2 (ENSMICG00000010839) #7	S100G (ENSMICG00000034068) #8	SYAP1 (ENSMICG00000000435) #9	TXLNG (ENSMICG00000000438) #10	RBBP7 (ENSMICG00000000440) #11	REPS2 (ENSMICG00000003790) #12	NHS (ENSMICG00000036975) #13	ENSMICG00000027086	SCML2 (ENSMICG00000027531)	CDKL5 (ENSMICG00000004179) #16	RS1 (ENSMICG00000004198) #18	PPEF1 (ENSMICG00000004203) #19	PHKA2 (ENSMICG00000004212) #20	ADGRG2 (ENSMICG00000004232) #21	PDHA1 (ENSMICG00000004067) #22	MAP3K15 (ENSMICG00000004080) #23	SH3KBP1 (ENSMICG00000004092) #24	BCLAF3 (ENSMICG00000004101)	MAP7D2 (ENSMICG00000004105) #26	EIF1AX (ENSMICG00000004110) #28	RPS6KA3 (ENSMICG00000004112) #29	CNKSR2 (ENSMICG00000002912) #32	KLHL34 (ENSMICG00000028251)	SMPX (ENSMICG00000008915) #33	ENSMICG00000044479	MBTPS2 (ENSMICG00000008917) #34	ENSMICG00000030382	ENSMICG00000037442	ENSMICG00000000192 #36	PHEX (ENSMICG00000000193) #37
Lemuriformes_a	ANCESTRAL SPECIES	204								ENSGT00940000159407	ENSGT00940000153528.a.b.a.b	ENSGT01090000260070.A #17	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	505									ENSPCOG00000006194	ENSPCOG00000024633	CDKL5 (ENSPCOG00000022705) #16	RS1 (ENSPCOG00000018582) #18	PPEF1 (ENSPCOG00000013904) #19	PHKA2 (ENSPCOG00000021054) #20	ADGRG2 (ENSPCOG00000022020) #21	ENSPCOG00000020305 #22	MAP3K15 (ENSPCOG00000005414) #23	SH3KBP1 (ENSPCOG00000019893) #24	BCLAF3 (ENSPCOG00000028321)	MAP7D2 (ENSPCOG00000012090) #26	ENSPCOG00000020014 #28
Coquerels sifaka	MODERN SPECIES	274	PTX3 (ENSPCOG00000024857)	CCNL1 (ENSPCOG00000015763)	LEKR1 (ENSPCOG00000008154)	TIPARP (ENSPCOG00000018471)	SSR3 (ENSPCOG00000017371)	KCNAB1 (ENSPCOG00000013343)	GMPS (ENSPCOG00000024460)	SLC33A1 (ENSPCOG00000021978)	C3orf33 (ENSPCOG00000007724)	PLCH1 (ENSPCOG00000028591)	STRIT1 (ENSPCOG00000015379)	MME (ENSPCOG00000013543)	GPR149 (ENSPCOG00000027399)	ENSPCOG00000011695	ARHGEF26 (ENSPCOG00000012536)	ENSPCOG00000022566 #22	RAP2B (ENSPCOG00000009740)	P2RY1 (ENSPCOG00000026439)	MBNL1 (ENSPCOG00000023511)	SUCNR1 (ENSPCOG00000019814)	AADACL2 (ENSPCOG00000003911)	IGSF10 (ENSPCOG00000018106)	MED12L (ENSPCOG00000020951)	P2RY12 (ENSPCOG00000011471)	P2RY13 (ENSPCOG00000022030)	GPR87 (ENSPCOG00000025356)	CLRN1 (ENSPCOG00000005621)	MINDY4B (ENSPCOG00000027685)	SIAH2 (ENSPCOG00000013552)	ERICH6 (ENSPCOG00000017914)	SELENOT (ENSPCOG00000015742)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	2504																ENSPSMG00000002787 #22
Greater bamboo lemur	MODERN SPECIES	1438																ENSPSMG00000009753 #22
Laurasiatheria	ANCESTRAL SPECIES	16	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Felidae	ANCESTRAL SPECIES	12	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT01030000235848	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00990000213085	ENSGT00390000018687
Panthera	ANCESTRAL SPECIES	41	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00510000046986.v.b.b.b	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT01090000260070.A #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT01030000235848
Panthera_a	ANCESTRAL SPECIES	40	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00510000046986.v.b.b.b	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00390000009320.cb	ENSGT00940000158222.ib.b	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29
leopard	MODERN SPECIES	139								ENSPPRG00000010766	ENSPPRG00000010762	CDKL5 (ENSPPRG00000010754) #16	RS1 (ENSPPRG00000010703) #18	PPEF1 (ENSPPRG00000010688) #19	PHKA2 (ENSPPRG00000010549) #20	ADGRG2 (ENSPPRG00000010256) #21	ENSPPRG00000008810	PDHA1 (ENSPPRG00000008782) #22	MAP3K15 (ENSPPRG00000008639) #23	SH3KBP1 (ENSPPRG00000008569) #24	BCLAF3 (ENSPPRG00000008464)	MAP7D2 (ENSPPRG00000008395) #26	ENSPPRG00000008180 #28	RPS6KA3 (ENSPPRG00000008105) #29	ENSPPRG00000008049
lion	MODERN SPECIES	88	RBBP7 (ENSPLOG00000015390) #11	REPS2 (ENSPLOG00000015573) #12	ENSPLOG00000015930	ENSPLOG00000015961	NHS (ENSPLOG00000016019) #13	RAI2 (ENSPLOG00000016300) #14	SCML2 (ENSPLOG00000016350)	CDKL5 (ENSPLOG00000016436) #16	ENSPLOG00000016465 #17	RS1 (ENSPLOG00000016497) #18	PPEF1 (ENSPLOG00000016638) #19	PHKA2 (ENSPLOG00000016957) #20	ADGRG2 (ENSPLOG00000017564) #21	ENSPLOG00000019887	ENSPLOG00000019908	PDHA1 (ENSPLOG00000019955) #22	MAP3K15 (ENSPLOG00000020043) #23	SH3KBP1 (ENSPLOG00000020327) #24	BCLAF3 (ENSPLOG00000020503)	MAP7D2 (ENSPLOG00000020581) #26	EIF1AX (ENSPLOG00000020933) #28	RPS6KA3 (ENSPLOG00000021031) #29	CYBB (ENSPLOG00000021184)	DYNLT3 (ENSPLOG00000021233)	ENSPLOG00000021250	ENSPLOG00000021262	SYTL5 (ENSPLOG00000021282)	ENSPLOG00000021386	OTC (ENSPLOG00000021548)	TSPAN7 (ENSPLOG00000021583)	MID1IP1 (ENSPLOG00000021611)
Tiger	MODERN SPECIES	323										ENSPTIG00000017604	CDKL5 (ENSPTIG00000018564) #16	RS1 (ENSPTIG00000019847) #18	PPEF1 (ENSPTIG00000020149) #19	PHKA2 (ENSPTIG00000004654) #20	ADGRG2 (ENSPTIG00000007761) #21	PDHA1 (ENSPTIG00000019524) #22	MAP3K15 (ENSPTIG00000021189) #23	BCLAF3 (ENSPTIG00000006480)	MAP7D2 (ENSPTIG00000009089) #26	ENSPTIG00000012582 #28	RPS6KA3 (ENSPTIG00000013422) #29	ENSPTIG00000015099
Cat	MODERN SPECIES	252	RBBP7 (ENSFCAG00000028919) #11	REPS2 (ENSFCAG00000006527) #12	ENSFCAG00000052354	NHS (ENSFCAG00000000186) #13	ENSFCAG00000043428	ENSFCAG00000047052	ENSFCAG00000053338 #15	SCML2 (ENSFCAG00000006438)	CDKL5 (ENSFCAG00000001075) #16	ENSFCAG00000026145 #17	RS1 (ENSFCAG00000037717) #18	PPEF1 (ENSFCAG00000001528) #19	PHKA2 (ENSFCAG00000001529) #20	ADGRG2 (ENSFCAG00000018328) #21	ENSFCAG00000006395	PDHA1 (ENSFCAG00000012903) #22	MAP3K15 (ENSFCAG00000012906) #23	SH3KBP1 (ENSFCAG00000003908) #24	BCLAF3 (ENSFCAG00000003909)	MAP7D2 (ENSFCAG00000010791) #26	EIF1AX (ENSFCAG00000035249) #28	RPS6KA3 (ENSFCAG00000010795) #29	ENSFCAG00000053775	ENSFCAG00000049761	CNKSR2 (ENSFCAG00000026807) #32	SMPX (ENSFCAG00000037718) #33	MBTPS2 (ENSFCAG00000029861) #34	SMS (ENSFCAG00000002434) #36	PHEX (ENSFCAG00000023221) #37	ENSFCAG00000051651	ENSFCAG00000038497
Caniformia	ANCESTRAL SPECIES	26	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.r.b #36	ENSGT00940000167584.b	ENSGT00870000136506.s #36	ENSGT00940000157313 #37	ENSGT00940000164183
Canidae	ANCESTRAL SPECIES	26	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT01090000260070.A #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.r.b #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Canis_lupus	ANCESTRAL SPECIES	26	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT01000000221142	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT01090000260070.A #17	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.r.b #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Dog	MODERN SPECIES	144	REPS2 (ENSCAFG00845030873) #12	ENSCAFG00845030938	NHS (ENSCAFG00845030967) #13	SCML1 (ENSCAFG00845030994)	RAI2 (ENSCAFG00845030999) #14	ENSCAFG00845024469 #15	SCML2 (ENSCAFG00845024846)	ENSCAFG00845025153	CDKL5 (ENSCAFG00845025238) #16	ENSCAFG00845025606 #17	RS1 (ENSCAFG00845025646) #18	PPEF1 (ENSCAFG00845025770) #19	PHKA2 (ENSCAFG00845026195) #20	ADGRG2 (ENSCAFG00845027443) #21	ENSCAFG00845028004	PDHA1 (ENSCAFG00845028035) #22	MAP3K15 (ENSCAFG00845028166) #23	SH3KBP1 (ENSCAFG00845028384) #24	BCLAF3 (ENSCAFG00845028801)	MAP7D2 (ENSCAFG00845028966) #26	EIF1AX (ENSCAFG00845029014) #28	RPS6KA3 (ENSCAFG00845029219) #29	CNKSR2 (ENSCAFG00845029599) #32	KLHL34 (ENSCAFG00845029813)	SMPX (ENSCAFG00845029832) #33	MBTPS2 (ENSCAFG00845029854) #34	ENSCAFG00845029922 #36	PHEX (ENSCAFG00845029993) #37	ENSCAFG00845030087	PTCHD1 (ENSCAFG00845030096)	PRDX4 (ENSCAFG00845030129)
Dingo	MODERN SPECIES	217	SYAP1 (ENSCAFG00020003729) #9	TXLNG (ENSCAFG00020003746) #10	RBBP7 (ENSCAFG00020003765) #11	REPS2 (ENSCAFG00020003791) #12	ENSCAFG00020003924	ENSCAFG00020003937	NHS (ENSCAFG00020003950) #13	RAI2 (ENSCAFG00020004001) #14	SCML2 (ENSCAFG00020004011)	CDKL5 (ENSCAFG00020004060) #16	ENSCAFG00020004181 #17	RS1 (ENSCAFG00020004187) #18	PPEF1 (ENSCAFG00020004211) #19	PHKA2 (ENSCAFG00020004228) #20	ADGRG2 (ENSCAFG00020004286) #21	PDHA1 (ENSCAFG00020004526) #22	MAP3K15 (ENSCAFG00020004533) #23	SH3KBP1 (ENSCAFG00020004559) #24	ENSCAFG00020004575	MAP7D2 (ENSCAFG00020004579) #26	EIF1AX (ENSCAFG00020004588) #28	RPS6KA3 (ENSCAFG00020004599) #29	ENSCAFG00020004620	CNKSR2 (ENSCAFG00020004670) #32	SMPX (ENSCAFG00020005104) #33	MBTPS2 (ENSCAFG00020005119) #34	ENSCAFG00020005174 #36	PHEX (ENSCAFG00020005217) #37	ENSCAFG00020005279	ENSCAFG00020005312	PTCHD1 (ENSCAFG00020005326)
Red fox	MODERN SPECIES	24	RBBP7 (ENSVVUG00000014406) #11	ENSVVUG00000014403	ENSVVUG00000014401	REPS2 (ENSVVUG00000014319) #12	NHS (ENSVVUG00000014292) #13	RAI2 (ENSVVUG00000014289) #14	ENSVVUG00000014283	ENSVVUG00000014260 #15	SCML2 (ENSVVUG00000014250)	ENSVVUG00000014245	ENSVVUG00000014243 #17	CDKL5 (ENSVVUG00000014210) #16	ENSVVUG00000014199	PPEF1 (ENSVVUG00000014157) #19	ADGRG2 (ENSVVUG00000013420) #21	PDHA1 (ENSVVUG00000013392) #22	MAP3K15 (ENSVVUG00000013244) #23	ENSVVUG00000013215	ENSVVUG00000013205	SH3KBP1 (ENSVVUG00000013144) #24	BCLAF3 (ENSVVUG00000013082)	MAP7D2 (ENSVVUG00000013035) #26	EIF1AX (ENSVVUG00000013024) #28	RPS6KA3 (ENSVVUG00000013013) #29	ENSVVUG00000012987	ENSVVUG00000012984	CNKSR2 (ENSVVUG00000012970) #32	ENSVVUG00000012959	SMPX (ENSVVUG00000012956) #33	MBTPS2 (ENSVVUG00000012954) #34	ENSVVUG00000012939 #36
Caniformia_b	ANCESTRAL SPECIES	24	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.r.b #36	ENSGT00940000167584.b	ENSGT00870000136506.s #36	ENSGT00940000157313 #37	ENSGT00940000164183
Ursidae	ANCESTRAL SPECIES	28	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181.f #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.r.b #36	ENSGT00940000167584.b	ENSGT00870000136506.s #36	ENSGT00940000157313 #37	ENSGT00940000164183
Ursus	ANCESTRAL SPECIES	47		ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181.f #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.r.b #36	ENSGT00870000136506.s #36	ENSGT00940000157313 #37	ENSGT01070000253775.a.d.a.a.a.a.k	ENSGT00950000186265	ENSGT00510000047522
American black bear	MODERN SPECIES	1863																PDHA1 (ENSUAMG00000024022) #22	MAP3K15 (ENSUAMG00000024021) #23
Polar bear	MODERN SPECIES	199	CTPS2 (ENSUMAG00000008722) #7	S100G (ENSUMAG00000008728) #8	ENSUMAG00000008732	SYAP1 (ENSUMAG00000008735) #9	TXLNG (ENSUMAG00000008747) #10	RBBP7 (ENSUMAG00000008756) #11	REPS2 (ENSUMAG00000008763) #12	NHS (ENSUMAG00000008784) #13	ENSUMAG00000008787	SCML2 (ENSUMAG00000008801)	CDKL5 (ENSUMAG00000008854) #16	RS1 (ENSUMAG00000008917) #18	PPEF1 (ENSUMAG00000008931) #19	PHKA2 (ENSUMAG00000009067) #20	ADGRG2 (ENSUMAG00000010103) #21	PDHA1 (ENSUMAG00000010424) #22	MAP3K15 (ENSUMAG00000010492) #23	SH3KBP1 (ENSUMAG00000010682) #24	BCLAF3 (ENSUMAG00000010697)	MAP7D2 (ENSUMAG00000010703) #26	ENSUMAG00000010717 #28	RPS6KA3 (ENSUMAG00000010772) #29	CNKSR2 (ENSUMAG00000010845) #32	SMPX (ENSUMAG00000011168) #33	MBTPS2 (ENSUMAG00000011194) #34	ENSUMAG00000011222 #35	SMS (ENSUMAG00000011225) #36	PHEX (ENSUMAG00000011248) #37	ENSUMAG00000011412	ENSUMAG00000011422	ENSUMAG00000011448
Giant Panda	MODERN SPECIES	2288	ENSAMEG00000023806	SYAP1 (ENSAMEG00000010286) #9	TXLNG (ENSAMEG00000010264) #10	RBBP7 (ENSAMEG00000010201) #11	REPS2 (ENSAMEG00000010165) #12	NHS (ENSAMEG00000010138) #13	ENSAMEG00000002958	RAI2 (ENSAMEG00000018565) #14	ENSAMEG00000029358	SCML2 (ENSAMEG00000016850)	CDKL5 (ENSAMEG00000016835) #16	RS1 (ENSAMEG00000016826) #18	PPEF1 (ENSAMEG00000016806) #19	PHKA2 (ENSAMEG00000016774) #20	ADGRG2 (ENSAMEG00000016754) #21	PDHA1 (ENSAMEG00000016730) #22	MAP3K15 (ENSAMEG00000016682) #23	SH3KBP1 (ENSAMEG00000016636) #24	BCLAF3 (ENSAMEG00000016629)	MAP7D2 (ENSAMEG00000016615) #26	ENSAMEG00000028944 #28	RPS6KA3 (ENSAMEG00000016514) #29	CNKSR2 (ENSAMEG00000016482) #32	KLHL34 (ENSAMEG00000016476)	SMPX (ENSAMEG00000016467) #33	ENSAMEG00000016444	SMS (ENSAMEG00000016423) #36	PHEX (ENSAMEG00000016398) #37	ENSAMEG00000011652	ENSAMEG00000019953	PTCHD1 (ENSAMEG00000014696)
Mustelinae	ANCESTRAL SPECIES	56	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506.s #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Ferret	MODERN SPECIES	229	TXLNG (ENSMPUG00000002808) #10	RBBP7 (ENSMPUG00000002818) #11	REPS2 (ENSMPUG00000002827) #12	NHS (ENSMPUG00000002834) #13	ENSMPUG00000002840	RAI2 (ENSMPUG00000019017) #14	ENSMPUG00000002856 #15	SCML2 (ENSMPUG00000002862)	ENSMPUG00000002872	ENSMPUG00000002898	CDKL5 (ENSMPUG00000002901) #16	RS1 (ENSMPUG00000002912) #18	PPEF1 (ENSMPUG00000002945) #19	PHKA2 (ENSMPUG00000002957) #20	ADGRG2 (ENSMPUG00000003173) #21	PDHA1 (ENSMPUG00000003269) #22	ENSMPUG00000003281 #23	ENSMPUG00000003295 #23	SH3KBP1 (ENSMPUG00000003301) #24	BCLAF3 (ENSMPUG00000003312)	MAP7D2 (ENSMPUG00000003325) #26	EIF1AX (ENSMPUG00000003337) #28	RPS6KA3 (ENSMPUG00000003384) #29	ENSMPUG00000003816
American mink	DUPLICATION
American mink	MODERN SPECIES	42	TXLNG (ENSNVIG00000020678) #10	RBBP7 (ENSNVIG00000020723) #11	REPS2 (ENSNVIG00000020761) #12	NHS (ENSNVIG00000020801) #13	ENSNVIG00000020825	ENSNVIG00000020836	ENSNVIG00000020854	SCML2 (ENSNVIG00000020875)	CDKL5 (ENSNVIG00000020913) #16	ENSNVIG00000020953 #17	RS1 (ENSNVIG00000000088) #18	PPEF1 (ENSNVIG00000000126) #19	PHKA2 (ENSNVIG00000000195) #20	ADGRG2 (ENSNVIG00000000398) #21	ENSNVIG00000001555 #22	ENSNVIG00000001566 #22	MAP3K15 (ENSNVIG00000001576) #23	SH3KBP1 (ENSNVIG00000001649) #24	BCLAF3 (ENSNVIG00000001781)	ENSNVIG00000001808 #26
American mink	MODERN SPECIES	42	SYAP1 (ENSNVIG00000020662) #9	TXLNG (ENSNVIG00000020678) #10	RBBP7 (ENSNVIG00000020723) #11	REPS2 (ENSNVIG00000020761) #12	NHS (ENSNVIG00000020801) #13	ENSNVIG00000020825	ENSNVIG00000020836	ENSNVIG00000020854	SCML2 (ENSNVIG00000020875)	CDKL5 (ENSNVIG00000020913) #16	ENSNVIG00000020953 #17	RS1 (ENSNVIG00000000088) #18	PPEF1 (ENSNVIG00000000126) #19	PHKA2 (ENSNVIG00000000195) #20	ADGRG2 (ENSNVIG00000000398) #21	ENSNVIG00000001555 #22	ENSNVIG00000001566 #22	MAP3K15 (ENSNVIG00000001576) #23	SH3KBP1 (ENSNVIG00000001649) #24	BCLAF3 (ENSNVIG00000001781)	ENSNVIG00000001808 #26
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Chiroptera	ANCESTRAL SPECIES	25	ENSGT00530000064238 #8	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Microchiroptera	ANCESTRAL SPECIES	25	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00540000073670	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Microbat	MODERN SPECIES	986	RBBP7 (ENSMLUG00000006194) #11	ENSMLUG00000028073	REPS2 (ENSMLUG00000008125) #12	NHS (ENSMLUG00000015408) #13	ENSMLUG00000029397	RAI2 (ENSMLUG00000015416) #14	SCML2 (ENSMLUG00000015450)	CDKL5 (ENSMLUG00000006808) #16	RS1 (ENSMLUG00000006836) #18	PPEF1 (ENSMLUG00000005487) #19	PHKA2 (ENSMLUG00000015264) #20	SCARB1 (ENSMLUG00000002680)	ADGRG2 (ENSMLUG00000005218) #21	ENSMLUG00000030082	ENSMLUG00000011884	PDHA1 (ENSMLUG00000012932) #22	MAP3K15 (ENSMLUG00000012936) #23	ENSMLUG00000025007	SH3KBP1 (ENSMLUG00000012949) #24	BCLAF3 (ENSMLUG00000012956)	MAP7D2 (ENSMLUG00000012967) #26	ENSMLUG00000012977 #28	RPS6KA3 (ENSMLUG00000012980) #29
Greater horseshoe bat	MODERN SPECIES		RBBP7 (ENSRFEG00010011331) #11	ENSRFEG00010011296	ENSRFEG00010011230	REPS2 (ENSRFEG00010010751) #12	ENSRFEG00010010721	NHS (ENSRFEG00010010332) #13	ENSRFEG00010010269	RAI2 (ENSRFEG00010010245) #14	ENSRFEG00010010207	SCML2 (ENSRFEG00010010166)	CDKL5 (ENSRFEG00010010106) #16	RS1 (ENSRFEG00010010035) #18	PPEF1 (ENSRFEG00010009902) #19	PHKA2 (ENSRFEG00010009773) #20	ADGRG2 (ENSRFEG00010009414) #21	PDHA1 (ENSRFEG00010009265) #22	MAP3K15 (ENSRFEG00010009034) #23	SH3KBP1 (ENSRFEG00010008770) #24	BCLAF3 (ENSRFEG00010008652)	MAP7D2 (ENSRFEG00010008522) #26	EIF1AX (ENSRFEG00010008355) #28	RPS6KA3 (ENSRFEG00010008249) #29	ENSRFEG00010008206	CNKSR2 (ENSRFEG00010007889) #32	KLHL34 (ENSRFEG00010007846)	SMPX (ENSRFEG00010007815) #33	ENSRFEG00010007751 #35	MBTPS2 (ENSRFEG00010007702) #34	ENSRFEG00010007656 #36	PHEX (ENSRFEG00010007442) #37	ENSRFEG00010007428
Megabat	MODERN SPECIES	539																PDHA1 (ENSPVAG00000005420) #22	MAP3K15 (ENSPVAG00000005426) #23	SH3KBP1 (ENSPVAG00000005430) #24
Equus	ANCESTRAL SPECIES	48	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT01090000261388	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00940000167584.b	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Horse	MODERN SPECIES	480	ENSECAG00000013855	TXLNG (ENSECAG00000014123) #10	RBBP7 (ENSECAG00000019979) #11	REPS2 (ENSECAG00000009429) #12	NHS (ENSECAG00000020766) #13	ENSECAG00000017851	ENSECAG00000030878	RAI2 (ENSECAG00000006060) #14	ENSECAG00000033783 #15	SCML2 (ENSECAG00000022025)	CDKL5 (ENSECAG00000007008) #16	RS1 (ENSECAG00000012117) #18	PPEF1 (ENSECAG00000013892) #19	PHKA2 (ENSECAG00000004868) #20	ADGRG2 (ENSECAG00000023252) #21	PDHA1 (ENSECAG00000001964) #22	MAP3K15 (ENSECAG00000022251) #23	SH3KBP1 (ENSECAG00000017758) #24	BCLAF3 (ENSECAG00000024666)	MAP7D2 (ENSECAG00000000072) #26	EIF1AX (ENSECAG00000006469) #28	RPS6KA3 (ENSECAG00000011322) #29	ENSECAG00000047809	ENSECAG00000049869	CNKSR2 (ENSECAG00000000149) #32	ENSECAG00000044474	KLHL34 (ENSECAG00000018669)	SMPX (ENSECAG00000058470) #33	MBTPS2 (ENSECAG00000000437)	SMS (ENSECAG00000017447) #36	PHEX (ENSECAG00000011455) #37
Donkey	MODERN SPECIES	36	ENSEASG00005007934	ENSEASG00005024714	ENSEASG00005024352	ENSEASG00005038774	ENSEASG00005036870	ENSEASG00005032700	ENSEASG00005000797	ENSEASG00005000808 #14	ENSEASG00005027646 #15	SCML2 (ENSEASG00005022494)	CDKL5 (ENSEASG00005022515) #16	RS1 (ENSEASG00005022504) #18	PPEF1 (ENSEASG00005022499) #19	ENSEASG00005025600 #20	ADGRG2 (ENSEASG00005014281) #21	PDHA1 (ENSEASG00005014303) #22	MAP3K15 (ENSEASG00005014304) #23	SH3KBP1 (ENSEASG00005014314) #24	ENSEASG00005035168	ENSEASG00005034136	ENSEASG00005014696	MAP7D2 (ENSEASG00005014697) #26	EIF1AX (ENSEASG00005009834) #28	RPS6KA3 (ENSEASG00005014705) #29	CNKSR2 (ENSEASG00005007178) #32	KLHL34 (ENSEASG00005037044)	SMPX (ENSEASG00005007668) #33	ENSEASG00005020041	SMS (ENSEASG00005020046) #36	PHEX (ENSEASG00005023744) #37	ENSEASG00005037356
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Suina	ANCESTRAL SPECIES	41	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00950000185291
Chacoan peccary	MODERN SPECIES	109	S100G (ENSCWAG00000014113) #8	CTPS2 (ENSCWAG00000013931) #7	SYAP1 (ENSCWAG00000013836) #9	TXLNG (ENSCWAG00000013662) #10	RBBP7 (ENSCWAG00000013432) #11	REPS2 (ENSCWAG00000013113) #12	NHS (ENSCWAG00000012785) #13	RAI2 (ENSCWAG00000012729) #14	SCML2 (ENSCWAG00000012506)	CDKL5 (ENSCWAG00000012250) #16	RS1 (ENSCWAG00000012171) #18	PPEF1 (ENSCWAG00000012062) #19	PHKA2 (ENSCWAG00000011981) #20	ADGRG2 (ENSCWAG00000004734) #21	ENSCWAG00000004397	PDHA1 (ENSCWAG00000004308) #22	MAP3K15 (ENSCWAG00000004160) #23	SH3KBP1 (ENSCWAG00000004005) #24	BCLAF3 (ENSCWAG00000003903)	MAP7D2 (ENSCWAG00000003689) #26	EIF1AX (ENSCWAG00000003625) #28	RPS6KA3 (ENSCWAG00000003548) #29
Pig	MODERN SPECIES	300	RBBP7 (ENSSSCG00000012149) #11	REPS2 (ENSSSCG00000012150) #12	NHS (ENSSSCG00000012151) #13	ENSSSCG00000012152	RAI2 (ENSSSCG00000012153) #14	ENSSSCG00000060254	ENSSSCG00000050671	ENSSSCG00000041054 #15	SCML2 (ENSSSCG00000012155)	CDKL5 (ENSSSCG00000012156) #16	RS1 (ENSSSCG00000026932) #18	PPEF1 (ENSSSCG00000030274) #19	PHKA2 (ENSSSCG00000012157) #20	ADGRG2 (ENSSSCG00000029756) #21	ENSSSCG00000040104	PDHA1 (ENSSSCG00000023643) #22	MAP3K15 (ENSSSCG00000020735) #23	SH3KBP1 (ENSSSCG00000012160) #24	BCLAF3 (ENSSSCG00000023334)	MAP7D2 (ENSSSCG00000012161) #26	EIF1AX (ENSSSCG00000032223) #28	RPS6KA3 (ENSSSCG00000012163) #29	ENSSSCG00000060065	CNKSR2 (ENSSSCG00000012164) #32	KLHL34 (ENSSSCG00000033979)	SMPX (ENSSSCG00000032720) #33	ENSSSCG00000012165	SMS (ENSSSCG00000012166) #36	PHEX (ENSSSCG00000012167) #37	ENSSSCG00000012169	PTCHD1 (ENSSSCG00000032433)
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Camelidae	ANCESTRAL SPECIES	59	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000164589	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00510000047522	ENSGT00940000164183	ENSGT00940000157080
Alpaca	MODERN SPECIES	377																PDHA1 (ENSVPAG00000009480) #22	ENSVPAG00000009481 #23	SH3KBP1 (ENSVPAG00000009482) #24
Arabian camel	MODERN SPECIES	204	S100G (ENSCDRG00005013884) #8	SYAP1 (ENSCDRG00005013928) #9	ENSCDRG00005014067 #10	RBBP7 (ENSCDRG00005014158) #11	REPS2 (ENSCDRG00005014399) #12	NHS (ENSCDRG00005014939) #13	SCML1 (ENSCDRG00005015136)	RAI2 (ENSCDRG00005015229) #14	SCML2 (ENSCDRG00005015356)	CDKL5 (ENSCDRG00005015479) #16	ENSCDRG00005015576	RS1 (ENSCDRG00005015612) #18	PPEF1 (ENSCDRG00005015683) #19	PHKA2 (ENSCDRG00005015770) #20	ADGRG2 (ENSCDRG00005016282) #21	PDHA1 (ENSCDRG00005021482) #22	SH3KBP1 (ENSCDRG00005021507) #24	BCLAF3 (ENSCDRG00005021538)	MAP7D2 (ENSCDRG00005021545) #26	EIF1AX (ENSCDRG00005021559) #28	RPS6KA3 (ENSCDRG00005021577) #29	CNKSR2 (ENSCDRG00005021599) #32	KLHL34 (ENSCDRG00005021612)	SMPX (ENSCDRG00005021613) #33	ENSCDRG00005021614	MBTPS2 (ENSCDRG00005021615) #34	SMS (ENSCDRG00005021617) #36	PHEX (ENSCDRG00005021620) #37	ENSCDRG00005021631	PTCHD1 (ENSCDRG00005021635)	ENSCDRG00005021636
Artiodactyla_b	ANCESTRAL SPECIES	24	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Cetacea	ANCESTRAL SPECIES	21	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT01010000222890.b	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009724.l.y.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080
Odontoceti	ANCESTRAL SPECIES	22	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT01010000222890.b	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.k.b	ENSGT00390000009724.l.y.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Odontoceti_a	ANCESTRAL SPECIES	20	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407.m	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT01010000222890.b	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.k.b	ENSGT00390000009724.l.y.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407.m	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT01010000222890.b	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.k.b	ENSGT00390000009724.l.y.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00940000172088	ENSGT00940000157313 #37	ENSGT00940000164207
Monodontidae	ANCESTRAL SPECIES	30	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00540000073670	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00940000159407.m	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00940000160729.b	ENSGT01010000222890.b	ENSGT00390000002034.j	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.k.b	ENSGT00390000009724.l.y.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00940000172088
Narwhal	MODERN SPECIES	309	RBBP7 (ENSMMNG00015020317) #11	REPS2 (ENSMMNG00015010789) #12	ENSMMNG00015010820	NHS (ENSMMNG00015010825) #13	ENSMMNG00015010836	RAI2 (ENSMMNG00015010851) #14	ENSMMNG00015010865	ENSMMNG00015010874	ENSMMNG00015010891	ENSMMNG00015010922	CDKL5 (ENSMMNG00015010933) #16	RS1 (ENSMMNG00015010947) #18	PPEF1 (ENSMMNG00015010972) #19	PHKA2 (ENSMMNG00015011017) #20	ADGRG2 (ENSMMNG00015011189) #21	PDHA1 (ENSMMNG00015011306) #22	SH3KBP1 (ENSMMNG00015011427) #24	ENSMMNG00015011582	ENSMMNG00015011595	ENSMMNG00015011610	ENSMMNG00015011630	BCLAF3 (ENSMMNG00015011642)	MAP7D2 (ENSMMNG00015011661) #26	ENSMMNG00015011692 #28	RPS6KA3 (ENSMMNG00015011742) #29	ENSMMNG00015011921	ENSMMNG00015011934	CNKSR2 (ENSMMNG00015012238) #32	KLHL34 (ENSMMNG00015012985)	SMPX (ENSMMNG00015012992) #33	ENSMMNG00015012997
Beluga whale	MODERN SPECIES	41	REPS2 (ENSDLEG00000020540) #12	ENSDLEG00000020552	ENSDLEG00000020554	NHS (ENSDLEG00000020557) #13	SCML1 (ENSDLEG00000020562)	RAI2 (ENSDLEG00000020567) #14	ENSDLEG00000020569	ENSDLEG00000020574	ENSDLEG00000020579	ENSDLEG00000020586	CDKL5 (ENSDLEG00000020591) #16	RS1 (ENSDLEG00000020598) #18	PPEF1 (ENSDLEG00000020612) #19	PHKA2 (ENSDLEG00000020633) #20	ADGRG2 (ENSDLEG00000020709) #21	PDHA1 (ENSDLEG00000020859) #22	MAP3K15 (ENSDLEG00000020876) #23	SH3KBP1 (ENSDLEG00000020919) #24	ENSDLEG00000020966	ENSDLEG00000020970	ENSDLEG00000020972	BCLAF3 (ENSDLEG00000020974)	MAP7D2 (ENSDLEG00000020985) #26	EIF1AX (ENSDLEG00000021017) #28	RPS6KA3 (ENSDLEG00000021020) #29	ENSDLEG00000021027	ENSDLEG00000021028	CNKSR2 (ENSDLEG00000021034) #32	SMPX (ENSDLEG00000021052) #33	ENSDLEG00000021055	MBTPS2 (ENSDLEG00000021061) #34
Vaquita	MODERN SPECIES	34	RBBP7 (ENSPSNG00000019143) #11	REPS2 (ENSPSNG00000019316) #12	ENSPSNG00000019537	ENSPSNG00000019571	NHS (ENSPSNG00000019626) #13	ENSPSNG00000019850	RAI2 (ENSPSNG00000019870) #14	ENSPSNG00000019901	ENSPSNG00000019959	CDKL5 (ENSPSNG00000020000) #16	ENSPSNG00000020052	RS1 (ENSPSNG00000020065) #18	PPEF1 (ENSPSNG00000020159) #19	PHKA2 (ENSPSNG00000020358) #20	ADGRG2 (ENSPSNG00000020539) #21	PDHA1 (ENSPSNG00000020773) #22	SH3KBP1 (ENSPSNG00000021240) #24	ENSPSNG00000021512	BCLAF3 (ENSPSNG00000021539)	MAP7D2 (ENSPSNG00000021591) #26	EIF1AX (ENSPSNG00000021671) #28	RPS6KA3 (ENSPSNG00000021768) #29	ENSPSNG00000021849	ENSPSNG00000021866	CNKSR2 (ENSPSNG00000022151) #32	KLHL34 (ENSPSNG00000022394)	SMPX (ENSPSNG00000022398) #33	ENSPSNG00000022401	ENSPSNG00000022411	ENSPSNG00000022423 #36	PHEX (ENSPSNG00000022431) #37
Dolphin	MODERN SPECIES	314																PDHA1 (ENSTTRG00000000660) #22	MAP3K15 (ENSTTRG00000000661) #23
Sperm whale	MODERN SPECIES	13	ENSPCTG00005005153	RBBP7 (ENSPCTG00005005178) #11	REPS2 (ENSPCTG00005005319) #12	ENSPCTG00005005421	NHS (ENSPCTG00005005450) #13	SCML1 (ENSPCTG00005005559)	ENSPCTG00005005600 #14	ENSPCTG00005005614 #14	SCML2 (ENSPCTG00005005727)	ENSPCTG00005005791	CDKL5 (ENSPCTG00005005814) #16	RS1 (ENSPCTG00005005843) #18	PPEF1 (ENSPCTG00005005905) #19	PHKA2 (ENSPCTG00005006139) #20	ADGRG2 (ENSPCTG00005006920) #21	PDHA1 (ENSPCTG00005011695) #22	SH3KBP1 (ENSPCTG00005011856) #24	BCLAF3 (ENSPCTG00005012120)	MAP7D2 (ENSPCTG00005012303) #26	EIF1AX (ENSPCTG00005012927) #28	RPS6KA3 (ENSPCTG00005013127) #29	ENSPCTG00005013565	ENSPCTG00005013591	CNKSR2 (ENSPCTG00005013662) #32	KLHL34 (ENSPCTG00005014125)	SMPX (ENSPCTG00005014144) #33	ENSPCTG00005014208	SMS (ENSPCTG00005014394) #36	PHEX (ENSPCTG00005014479) #37	ENSPCTG00005014734	ENSPCTG00005014773
Blue whale	MODERN SPECIES	40	ENSBMSG00010021135	ENSBMSG00010021146	RAI2 (ENSBMSG00010021187) #14	ENSBMSG00010013811	ENSBMSG00010013823	ENSBMSG00010013867	ENSBMSG00010013905	CDKL5 (ENSBMSG00010013954) #16	ENSBMSG00010013988	ENSBMSG00010013995	RS1 (ENSBMSG00010014012) #18	PPEF1 (ENSBMSG00010014080) #19	PHKA2 (ENSBMSG00010014126) #20	ADGRG2 (ENSBMSG00010014260) #21	ENSBMSG00010014456	PDHA1 (ENSBMSG00010014498) #22	MAP3K15 (ENSBMSG00010014594) #23	SH3KBP1 (ENSBMSG00010014785) #24	ENSBMSG00010014991	BCLAF3 (ENSBMSG00010015038)	MAP7D2 (ENSBMSG00010015124) #26	ENSBMSG00010015217 #28	RPS6KA3 (ENSBMSG00010015348) #29	ENSBMSG00010015592	ENSBMSG00010015603	ENSBMSG00010015623	CNKSR2 (ENSBMSG00010015971) #32	KLHL34 (ENSBMSG00010021180)	SMPX (ENSBMSG00010021188) #33	ENSBMSG00010021193	ENSBMSG00010021206 #36
Pecora	ANCESTRAL SPECIES	34	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Percora_a	ANCESTRAL SPECIES	22	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00940000160347.a	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Siberian musk deer	MODERN SPECIES	39	ENSMMSG00000016545	REPS2 (ENSMMSG00000016088) #12	ENSMMSG00000016017	NHS (ENSMMSG00000015809) #13	ENSMMSG00000015771	RAI2 (ENSMMSG00000015760) #14	ENSMMSG00000015753	ENSMMSG00000015735	SCML2 (ENSMMSG00000015652)	CDKL5 (ENSMMSG00000015599) #16	RS1 (ENSMMSG00000015564) #18	PPEF1 (ENSMMSG00000015507) #19	PHKA2 (ENSMMSG00000015473) #20	ADGRG2 (ENSMMSG00000015124) #21	ENSMMSG00000015071	PDHA1 (ENSMMSG00000015042) #22	ENSMMSG00000015019	ENSMMSG00000015007	MAP3K15 (ENSMMSG00000014913) #23	ENSMMSG00000014890	ENSMMSG00000014880	SH3KBP1 (ENSMMSG00000014761) #24	BCLAF3 (ENSMMSG00000014667)	MAP7D2 (ENSMMSG00000014040) #26	ENSMMSG00000013961 #28	RPS6KA3 (ENSMMSG00000013842) #29	ENSMMSG00000013809	ENSMMSG00000013799	CNKSR2 (ENSMMSG00000006728) #32	KLHL34 (ENSMMSG00000006431)	SMPX (ENSMMSG00000006404) #33
Bovidae	ANCESTRAL SPECIES	23	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00940000160347.a	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Caprinae	DUPLICATION
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES																	ENSGT00530000063174.a.i.u.a #22
Goat	MODERN SPECIES		ENSCHIG00000021084	MECOM (ENSCHIG00000015174)	ENSCHIG00000001263	GOLIM4 (ENSCHIG00000024949)	ENSCHIG00000014733	ENSCHIG00000000612	ENSCHIG00000021309	WDR49 (ENSCHIG00000013106)	SERPINI2 (ENSCHIG00000018550)	ZBBX (ENSCHIG00000025980)	BCHE (ENSCHIG00000026772)	SLITRK3 (ENSCHIG00000006438)	ENSCHIG00000016725	SI (ENSCHIG00000010240)	ENSCHIG00000011051	ENSCHIG00000023820 #22	OTOL1 (ENSCHIG00000012937)	SPTSSB (ENSCHIG00000009108)	NMD3 (ENSCHIG00000016015)	ENSCHIG00000026689	ENSCHIG00000020415	ENSCHIG00000014679	PPM1L (ENSCHIG00000003416)	ENSCHIG00000022304	ARL14 (ENSCHIG00000006468)	KPNA4 (ENSCHIG00000027240)	TRIM59 (ENSCHIG00000013800)	SMC4 (ENSCHIG00000018909)	IFT80 (ENSCHIG00000024872)	C3orf80 (ENSCHIG00000010005)	ENSCHIG00000021362
Rambouillet Sheep	MODERN SPECIES		LRRC34 (ENSOARG00020001962)	MYNN (ENSOARG00020002108)	ACTRT3 (ENSOARG00020002123)	MECOM (ENSOARG00020002184)	ENSOARG00020002458	ENSOARG00020002481	GOLIM4 (ENSOARG00020002523)	SERPINI1 (ENSOARG00020002561)	PDCD10 (ENSOARG00020002590)	SERPINI2 (ENSOARG00020002638)	BCHE (ENSOARG00020002687)	SLITRK3 (ENSOARG00020002710)	SI (ENSOARG00020002809)	ENSOARG00020004705	ENSOARG00020004716	ENSOARG00020004733 #22	NMD3 (ENSOARG00020004805)	SPTSSB (ENSOARG00020004978)	ENSOARG00020004989	ENSOARG00020005007	ENSOARG00020005029	PPM1L (ENSOARG00020005069)	ENSOARG00020005147	ARL14 (ENSOARG00020005166)	KPNA4 (ENSOARG00020005180)	ENSOARG00020005281	SMC4 (ENSOARG00020005306)	IFT80 (ENSOARG00020005544)	ENSOARG00020005593	C3orf80 (ENSOARG00020005601)	IL12A (ENSOARG00020005615)
Caprinae	ANCESTRAL SPECIES	46	ENSGT00910000144179.b.a #7	ENSGT00530000064238 #8	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a.r #20	ENSGT00940000156341 #21	ENSGT00940000160347.a	ENSGT00530000063174.a.i.u.b #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020009586	CTPS2 (ENSOARG00020009621) #7	S100G (ENSOARG00020009888) #8	SYAP1 (ENSOARG00020009929) #9	TXLNG (ENSOARG00020010154) #10	RBBP7 (ENSOARG00020010350) #11	REPS2 (ENSOARG00020010562) #12	NHS (ENSOARG00020011266) #13	RAI2 (ENSOARG00020011877) #14	CDKL5 (ENSOARG00020012130) #16	RS1 (ENSOARG00020012237) #18	ENSOARG00020012454	PHKA2 (ENSOARG00020012486) #20	ADGRG2 (ENSOARG00020013283) #21	ENSOARG00020014052	PDHA1 (ENSOARG00020014126) #22	MAP3K15 (ENSOARG00020014315) #23	SH3KBP1 (ENSOARG00020014389) #24	ENSOARG00020014649	MAP7D2 (ENSOARG00020014919) #26	EIF1AX (ENSOARG00020015967) #28	RPS6KA3 (ENSOARG00020016195) #29	ENSOARG00020016638	ENSOARG00020016661	ENSOARG00020016684	ENSOARG00020016703	ENSOARG00020016721	ENSOARG00020016730	CNKSR2 (ENSOARG00020016850) #32	KLHL34 (ENSOARG00020022568)	SMPX (ENSOARG00020022580) #33
Goat	MODERN SPECIES	130																ENSCHIG00000000162 #22	ENSCHIG00000000233 #23
Caprinae	ANCESTRAL SPECIES																	ENSGT00530000063174.a.i.v #22
Goat	MODERN SPECIES	43												TMEM185A (ENSCHIG00000004747)	ENSCHIG00000000434	ENSCHIG00000019036	ENSCHIG00000018828	ENSCHIG00000026446 #22	ENSCHIG00000010772	ENSCHIG00000022330	ENSCHIG00000010608
Bovinae	ANCESTRAL SPECIES	32	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00940000160347.a.c	ENSGT00940000160347.a.d.a.b	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000167584	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00950000185346
Bos	ANCESTRAL SPECIES	32	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00900000141068.e.a.e.a.a	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00940000160347.a.c	ENSGT00940000160347.a.d.a.b	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.l	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000167584	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Bos_a	ANCESTRAL SPECIES	63															ENSGT00940000160347.a.d.a.b	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.l	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00940000154451.l.b.b.a.a.b	ENSGT00940000167584	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Domestic yak	MODERN SPECIES	69													ENSBGRG00000014636	ENSBGRG00000014610	ENSBGRG00000014583	PDHA1 (ENSBGRG00000014128) #22	ENSBGRG00000013897 #23	ENSBGRG00000012957 #23	SH3KBP1 (ENSBGRG00000011750) #24	BCLAF3 (ENSBGRG00000011387)	MAP7D2 (ENSBGRG00000011015) #26	ENSBGRG00000010670 #28	RPS6KA3 (ENSBGRG00000010065) #29	ENSBGRG00000009948	ENSBGRG00000009908	CNKSR2 (ENSBGRG00000009403) #32	KLHL34 (ENSBGRG00000009352)	SMPX (ENSBGRG00000009309) #33	ENSBGRG00000009234 #35	MBTPS2 (ENSBGRG00000009064) #34	ENSBGRG00000009009
Wild yak	MODERN SPECIES	932																PDHA1 (ENSBMUG00000016808) #22	MAP3K15 (ENSBMUG00000016858) #23	SH3KBP1 (ENSBMUG00000016923) #24	BCLAF3 (ENSBMUG00000016986)	MAP7D2 (ENSBMUG00000017083) #26	EIF1AX (ENSBMUG00000017161) #28	RPS6KA3 (ENSBMUG00000017229) #29	ENSBMUG00000017267	ENSBMUG00000017276	ENSBMUG00000017283	ENSBMUG00000017291	CNKSR2 (ENSBMUG00000017867) #32	SMPX (ENSBMUG00000018671) #33	ENSBMUG00000018702	SMS (ENSBMUG00000018739) #36	PHEX (ENSBMUG00000018766) #37
Bos_b	ANCESTRAL SPECIES	39	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00900000141068.e.a.e.a.a	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00940000160347.a.c	ENSGT00940000160347.a.d.a.a.a	ENSGT00940000160347.a.d.a.b	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00390000009113.a.a.l	ENSGT00940000156832.p.b	ENSGT00940000156709 #32	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00940000154451.l.b.b.a.a.b	ENSGT00940000167584	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Cow	MODERN SPECIES	177	REPS2 (ENSBTAG00000031261) #12	ENSBTAG00000031256	ENSBTAG00000053299	NHS (ENSBTAG00000039195) #13	SCML1 (ENSBTAG00000017649)	RAI2 (ENSBTAG00000039049) #14	SCML2 (ENSBTAG00000009420)	CDKL5 (ENSBTAG00000007428) #16	RS1 (ENSBTAG00000031145) #18	PPEF1 (ENSBTAG00000009545) #19	PHKA2 (ENSBTAG00000015355) #20	ADGRG2 (ENSBTAG00000000576) #21	MGC134232 (ENSBTAG00000038660)	ENSBTAG00000037550	ENSBTAG00000051616	PDHA1 (ENSBTAG00000019852) #22	MAP3K15 (ENSBTAG00000019855) #23	SH3KBP1 (ENSBTAG00000003727) #24	BCLAF3 (ENSBTAG00000021962)	MAP7D2 (ENSBTAG00000017628) #26	EIF1AX (ENSBTAG00000017633) #28	RPS6KA3 (ENSBTAG00000017639) #29	ENSBTAG00000047699	ENSBTAG00000050929	ENSBTAG00000013625	CNKSR2 (ENSBTAG00000044202) #32	SMPX (ENSBTAG00000015204) #33	MBTPS2 (ENSBTAG00000008183)	SMS (ENSBTAG00000018382) #36	ENSBTAG00000052700	PHEX (ENSBTAG00000000419) #37
Hybrid Bos Indicus	MODERN SPECIES	315	RBBP7 (ENSBIXG00005027966) #11	REPS2 (ENSBIXG00005027877) #12	NHS (ENSBIXG00005027684) #13	ENSBIXG00005027553	ENSBIXG00005027526	RAI2 (ENSBIXG00005027505) #14	SCML2 (ENSBIXG00005005620)	CDKL5 (ENSBIXG00005005323) #16	RS1 (ENSBIXG00005005321) #18	PPEF1 (ENSBIXG00005004677) #19	PHKA2 (ENSBIXG00005027106) #20	ADGRG2 (ENSBIXG00005026817) #21	ENSBIXG00005026541	ENSBIXG00005026535	ENSBIXG00005005571	ENSBIXG00005026498 #22	MAP3K15 (ENSBIXG00005004522) #23	SH3KBP1 (ENSBIXG00005026195) #24	ENSBIXG00005025849	BCLAF3 (ENSBIXG00005025827)	MAP7D2 (ENSBIXG00005025740) #26	EIF1AX (ENSBIXG00005025615) #28	RPS6KA3 (ENSBIXG00005025516) #29	ENSBIXG00005024937	ENSBIXG00005024903	ENSBIXG00005024880	ENSBIXG00005024836	CNKSR2 (ENSBIXG00005024732) #32	SMPX (ENSBIXG00005024419) #33	MBTPS2 (ENSBIXG00005024353) #34	ENSBIXG00005024303
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1323	CAPN6 (ENSCHYG00000023258)	DCX (ENSCHYG00000023321)	SERTM2 (ENSCHYG00000023372)	ENSCHYG00000023393	ENSCHYG00000023483	ENSCHYG00000023716	TRPC5OS (ENSCHYG00000023871)	ENSCHYG00000023881	LHFPL1 (ENSCHYG00000023922)	AMOT (ENSCHYG00000023944)	HTR2C (ENSCHYG00000024246)	IL13RA2 (ENSCHYG00000024287)	LRCH2 (ENSCHYG00000008772)	PLS3 (ENSCHYG00000008909)	ENSCHYG00000009546	ENSCHYG00000009598 #22	AGTR2 (ENSCHYG00000009628)	ENSCHYG00000009726	CT83 (ENSCHYG00000009841)	ENSCHYG00000009897	ENSCHYG00000009929	ENSCHYG00000009954	KLHL13 (ENSCHYG00000010013)	WDR44 (ENSCHYG00000010370)	DOCK11 (ENSCHYG00000011126)	IL13RA1 (ENSCHYG00000011896)	ENSCHYG00000012039	LONRF3 (ENSCHYG00000012064)	ENSCHYG00000012323	ENSCHYG00000012357	PGRMC1 (ENSCHYG00000012477)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1323	RAI2 (ENSCHYG00000018670) #14	ENSCHYG00000018619	ENSCHYG00000018572	NHS (ENSCHYG00000018180) #13	REPS2 (ENSCHYG00000017518) #12	SYAP1 (ENSCHYG00000017346) #9	ENSCHYG00000017066 #15	SCML2 (ENSCHYG00000016775)	CDKL5 (ENSCHYG00000016442) #16	RS1 (ENSCHYG00000016355) #18	PPEF1 (ENSCHYG00000016044) #19	ENSCHYG00000015917	ENSCHYG00000015895	PHKA2 (ENSCHYG00000014501) #20	ADGRG2 (ENSCHYG00000025589) #21	ENSCHYG00000025479 #22	ENSCHYG00000025460	MAP3K15 (ENSCHYG00000025350) #23	SH3KBP1 (ENSCHYG00000024812) #24	BCLAF3 (ENSCHYG00000024575)	MAP7D2 (ENSCHYG00000024324) #26	ENSCHYG00000024281	EIF1AX (ENSCHYG00000024205) #28	RPS6KA3 (ENSCHYG00000023911) #29	ENSCHYG00000023852	ENSCHYG00000023829	CNKSR2 (ENSCHYG00000023268) #32	KLHL34 (ENSCHYG00000023198)	SMPX (ENSCHYG00000023180) #33	MBTPS2 (ENSCHYG00000023135) #34	ENSCHYG00000023111
Yarkand deer	MODERN SPECIES	61															ENSCHYG00000009014	ENSCHYG00000008975 #22
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000016961	ZMAT1 (ENSCHYG00000017092)	BEX5 (ENSCHYG00000017246)	ENSCHYG00000017277	TMSB15A (ENSCHYG00000017406)	GPRASP1 (ENSCHYG00000017514)	ENSCHYG00000017568	ENSCHYG00000017589	ENSCHYG00000017775	SRPX2 (ENSCHYG00000017819)	TSPAN6 (ENSCHYG00000017982)	TNMD (ENSCHYG00000018219)	ENSCHYG00000018281	PCDH19 (ENSCHYG00000018307)	ENSCHYG00000018423	ENSCHYG00000018452 #22	ENSCHYG00000018486	ENSCHYG00000018504	ENSCHYG00000018566	DIAPH2 (ENSCHYG00000018624)	ENSCHYG00000018943	ENSCHYG00000018986	ENSCHYG00000019061	ENSCHYG00000019101	ENSCHYG00000019126	FAM133A (ENSCHYG00000019252)	ENSCHYG00000019346	ENSCHYG00000019408	ENSCHYG00000019618	ENSCHYG00000019678	ENSCHYG00000019710
Eulipotyphla	ANCESTRAL SPECIES	540																ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24
Hedgehog	MODERN SPECIES	2868																PDHA1 (ENSEEUG00000005485) #22	MAP3K15 (ENSEEUG00000005668) #23	SH3KBP1 (ENSEEUG00000005862) #24
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	4344																ENSSARG00000008912 #22	MAP3K15 (ENSSARG00000008925) #23
Common shrew	MODERN SPECIES	4300																ENSSARG00000008171 #22
Atlantogenata	ANCESTRAL SPECIES	50	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Xenarthra	ANCESTRAL SPECIES	165										ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Armadillo	MODERN SPECIES	729									SCML2 (ENSDNOG00000002390)	CDKL5 (ENSDNOG00000002494) #16	ENSDNOG00000041458	RS1 (ENSDNOG00000002498) #18	PPEF1 (ENSDNOG00000031966) #19	PHKA2 (ENSDNOG00000012404) #20	ADGRG2 (ENSDNOG00000012455) #21	PDHA1 (ENSDNOG00000008462) #22	MAP3K15 (ENSDNOG00000007828) #23	SH3KBP1 (ENSDNOG00000016477) #24	BCLAF3 (ENSDNOG00000045492)	MAP7D2 (ENSDNOG00000017855) #26	EIF1AX (ENSDNOG00000045675) #28	RPS6KA3 (ENSDNOG00000003310) #29	ENSDNOG00000031647	CNKSR2 (ENSDNOG00000000614) #32	KLHL34 (ENSDNOG00000033922)	SMPX (ENSDNOG00000016757) #33	MBTPS2 (ENSDNOG00000033022) #34	SMS (ENSDNOG00000006712) #36	PHEX (ENSDNOG00000002993) #37	ENSDNOG00000041572	ENSDNOG00000032914
Sloth	MODERN SPECIES	2471																ENSCHOG00000006341 #22
Afrotheria	ANCESTRAL SPECIES	66	ENSGT01100000263512.b.b.a	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Afrotheria_a	ANCESTRAL SPECIES	64	ENSGT01100000263512.b.b.a	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000164165	ENSGT00940000154164.d #14	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a.i #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000164183	ENSGT00940000157080	ENSGT00940000153430.a.a
Hyrax	MODERN SPECIES	2266																PDHA1 (ENSPCAG00000004196) #22	ENSPCAG00000004266 #23
Elephant	MODERN SPECIES	369	TXLNG (ENSLAFG00000013552) #10	RBBP7 (ENSLAFG00000013554) #11	REPS2 (ENSLAFG00000012599) #12	NHS (ENSLAFG00000017062) #13	ENSLAFG00000017074	RAI2 (ENSLAFG00000014793) #14	ENSLAFG00000011802 #15	ENSLAFG00000011808	ENSLAFG00000027704	CDKL5 (ENSLAFG00000009417) #16	RS1 (ENSLAFG00000009423) #18	ENSLAFG00000009424 #19	PHKA2 (ENSLAFG00000009425) #20	ADGRG2 (ENSLAFG00000009428) #21	ENSLAFG00000026076	PDHA1 (ENSLAFG00000009426) #22	MAP3K15 (ENSLAFG00000009429) #23	SH3KBP1 (ENSLAFG00000009756) #24	BCLAF3 (ENSLAFG00000008518)	MAP7D2 (ENSLAFG00000023306) #26	EIF1AX (ENSLAFG00000007016) #28	RPS6KA3 (ENSLAFG00000007020) #29	CNKSR2 (ENSLAFG00000007401) #32	KLHL34 (ENSLAFG00000007404)	SMPX (ENSLAFG00000001873) #33	MBTPS2 (ENSLAFG00000017242) #34	SMS (ENSLAFG00000003543) #36	PHEX (ENSLAFG00000010566) #37	ENSLAFG00000010569	ENSLAFG00000011531	PTCHD1 (ENSLAFG00000022742)
Tenrec	MODERN SPECIES	2784																PDHA1 (ENSETEG00000001392) #22
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000164379	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000157887	ENSGT00900000140979.a.a.`b.b
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Yarkand deer	MODERN SPECIES	8	ENSCHYG00000014006	FAM13A (ENSCHYG00000013408)	TIGD2 (ENSCHYG00000013300)	GPRIN3 (ENSCHYG00000013257)	ENSCHYG00000013224	SNCA (ENSCHYG00000013101)	MMRN1 (ENSCHYG00000013009)	CCSER1 (ENSCHYG00000012836)	GRID2 (ENSCHYG00000012507)	ATOH1 (ENSCHYG00000012447)	SMARCAD1 (ENSCHYG00000012370)	HPGDS (ENSCHYG00000012305)	PDLIM5 (ENSCHYG00000011689)	BMPR1B (ENSCHYG00000011513)	UNC5C (ENSCHYG00000011195)	PDHA2 (ENSCHYG00000011151) ##22	ENSCHYG00000011128	STPG2 (ENSCHYG00000011023)	RAP1GDS1 (ENSCHYG00000009459)	TSPAN5 (ENSCHYG00000009162)	ENSCHYG00000009101	ENSCHYG00000009081	ENSCHYG00000009041	ENSCHYG00000008899	METAP1 (ENSCHYG00000008757)	ENSCHYG00000008689	ADH4 (ENSCHYG00000008600)	ADH6 (ENSCHYG00000008516)	ENSCHYG00000008471	ENSCHYG00000008395	C4orf17 (ENSCHYG00000008205)
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00950000183183.b.a.q.a.c.b	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00390000016927.i.a.a.b	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844
Bovinae	ANCESTRAL SPECIES	15	ENSGT00730000111564	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000161841.i.b.a	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00950000183183.b.a.q.a.c.b	ENSGT00940000154194	ENSGT00950000182891.a.a.b.a.b.a.m.a.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00960000190398	ENSGT00940000162645	ENSGT00390000016927.i.a.a.b	ENSGT00940000163645	ENSGT00940000162845
Bos	ANCESTRAL SPECIES	15	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000161841.i.b.a	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000153362.a.cb.a.a.a	ENSGT00950000183183.b.a.q.a.c.b.b	ENSGT00940000154194	ENSGT00950000182891.a.a.b.a.b.a.m.a.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00960000190398	ENSGT00940000162645	ENSGT00390000016927.i.a.a.b	ENSGT00940000163645
Bos_b	ANCESTRAL SPECIES	14	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.b.b.b.a.b.a.a.b.a.a.a	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000161841.i.b.a	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000153362.a.cb.a.a.a	ENSGT00950000183183.b.a.q.a.c.b.a	ENSGT00940000154194	ENSGT00950000182891.a.a.b.a.b.a.m.a.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00960000190398	ENSGT00940000162645	ENSGT00390000016927.i.a.a.b	ENSGT00940000163645
Hybrid Bos Indicus	MODERN SPECIES	25	MMRN1 (ENSBIXG00005002999)	ENSBIXG00005003008	ENSBIXG00005018562	ENSBIXG00005018606	CCSER1 (ENSBIXG00005018668)	GRID2 (ENSBIXG00005018931)	ATOH1 (ENSBIXG00005019073)	SMARCAD1 (ENSBIXG00005019129)	HPGDS (ENSBIXG00005019143)	PDLIM5 (ENSBIXG00005019427)	ENSBIXG00005019501	ENSBIXG00005019512	BMPR1B (ENSBIXG00005019716)	ENSBIXG00005005526	UNC5C (ENSBIXG00005019951)	PDHA2 (ENSBIXG00005006818) ##22	ENSBIXG00005020010	ENSBIXG00005020038	ENSBIXG00005003297	STPG2 (ENSBIXG00005020087)	RAP1GDS1 (ENSBIXG00005020210)	ENSBIXG00005003369	TSPAN5 (ENSBIXG00005020262)	ENSBIXG00005020276	EIF4E (ENSBIXG00005020322)	ENSBIXG00005005594	ADH5 (ENSBIXG00005020398)	ENSBIXG00005020447	ADH6 (ENSBIXG00005020520)	METAP1 (ENSBIXG00005020582)	ENSBIXG00005003522
Cow	MODERN SPECIES	25	TIGD2 (ENSBTAG00000015265)	GPRIN3 (ENSBTAG00000045966)	SNCA (ENSBTAG00000024957)	MMRN1 (ENSBTAG00000010285)	ENSBTAG00000045523	CCSER1 (ENSBTAG00000019808)	ENSBTAG00000053441	GRID2 (ENSBTAG00000046413)	ATOH1 (ENSBTAG00000002895)	SMARCAD1 (ENSBTAG00000017061)	HPGDS (ENSBTAG00000017073)	PDLIM5 (ENSBTAG00000012818)	BMPR1B (ENSBTAG00000002081)	ENSBTAG00000050287	UNC5C (ENSBTAG00000002084)	PDHA2 (ENSBTAG00000026250) ##22	ENSBTAG00000015464	ENSBTAG00000023000	STPG2 (ENSBTAG00000049465)	RAP1GDS1 (ENSBTAG00000007522)	TSPAN5 (ENSBTAG00000012343)	ENSBTAG00000024578	EIF4E (ENSBTAG00000009522)	ENSBTAG00000024125	METAP1 (ENSBTAG00000016004)	ADH5 (ENSBTAG00000016007)	ENSBTAG00000055127	ADH4 (ENSBTAG00000034139)	ENSBTAG00000052318	ADH6 (ENSBTAG00000006991)	ADH6 (ENSBTAG00000006986)
Bos_a	ANCESTRAL SPECIES	33	ENSGT00390000015889.o.b	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.a.a.a.a.b.b	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000161841.i.b.a	ENSGT00390000018596.B.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000153362.a.cb.a.a.a	ENSGT00950000183183.b.a.q.a.c.b.b	ENSGT00940000154194	ENSGT00950000182891.a.a.b.a.b.a.m.a.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708
Domestic yak	MODERN SPECIES	25	MMRN1 (ENSBGRG00000022987)	CCSER1 (ENSBGRG00000023090)	ENSBGRG00000023437	ENSBGRG00000023458	ENSBGRG00000023469	ENSBGRG00000023475	GRID2 (ENSBGRG00000023510)	ATOH1 (ENSBGRG00000023717)	SMARCAD1 (ENSBGRG00000023737)	HPGDS (ENSBGRG00000000303)	PDLIM5 (ENSBGRG00000000397)	ENSBGRG00000000612	ENSBGRG00000000618	BMPR1B (ENSBGRG00000000658)	UNC5C (ENSBGRG00000000763)	PDHA2 (ENSBGRG00000000876) ##22	ENSBGRG00000000891	STPG2 (ENSBGRG00000000913)	ENSBGRG00000000988	RAP1GDS1 (ENSBGRG00000001075)	TSPAN5 (ENSBGRG00000001483)	ENSBGRG00000001534	ENSBGRG00000001557	EIF4E (ENSBGRG00000001581)	ENSBGRG00000001626	METAP1 (ENSBGRG00000001645)	ADH5 (ENSBGRG00000001695)	ADH4 (ENSBGRG00000001793)	ADH6 (ENSBGRG00000001847)	ENSBGRG00000001962	ENSBGRG00000001971
Wild yak	MODERN SPECIES	518																PDHA2 (ENSBMUG00000013257) ##22	ENSBMUG00000013289	ENSBMUG00000013303
American bison	MODERN SPECIES	3179										SMARCAD1 (ENSBBBG00000021403)	HPGDS (ENSBBBG00000005710)	PDLIM5 (ENSBBBG00000021614)	ENSBBBG00000021647	BMPR1B (ENSBBBG00000021707)	UNC5C (ENSBBBG00000021798)	PDHA2 (ENSBBBG00000021816) ##22	ENSBBBG00000021827	ENSBBBG00000021839	ENSBBBG00000021848	RAP1GDS1 (ENSBBBG00000022062)	TSPAN5 (ENSBBBG00000005833)	ENSBBBG00000022107	ENSBBBG00000022115	EIF4E (ENSBBBG00000005843)	ENSBBBG00000022134	METAP1 (ENSBBBG00000022151)	ADH5 (ENSBBBG00000022169)	ENSBBBG00000022176	ADH4 (ENSBBBG00000022206)	ENSBBBG00000022216	ADH6 (ENSBBBG00000007283)
Caprinae	ANCESTRAL SPECIES	13	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000018596.B.b	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00950000183183.b.a.q.a.c.b	ENSGT00940000154194	ENSGT00950000182891.a.a.b.a.b.b.b.d.a	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645.b	ENSGT00390000016927.i.a.a.b.a	ENSGT00940000163645	ENSGT00940000162645.a	ENSGT00390000016927.i.a.a.b.b	ENSGT00940000162845
Goat	MODERN SPECIES	25	TIGD2 (ENSCHIG00000008747)	GPRIN3 (ENSCHIG00000008090)	SNCA (ENSCHIG00000012331)	ENSCHIG00000013599	MMRN1 (ENSCHIG00000022636)	CCSER1 (ENSCHIG00000019553)	ENSCHIG00000000698	GRID2 (ENSCHIG00000020528)	ATOH1 (ENSCHIG00000011106)	ENSCHIG00000014271	SMARCAD1 (ENSCHIG00000012905)	HPGDS (ENSCHIG00000022190)	PDLIM5 (ENSCHIG00000008891)	BMPR1B (ENSCHIG00000017761)	UNC5C (ENSCHIG00000007694)	PDHA2 (ENSCHIG00000008223) ##22	ENSCHIG00000013187	STPG2 (ENSCHIG00000014643)	RAP1GDS1 (ENSCHIG00000013239)	TSPAN5 (ENSCHIG00000022359)	ENSCHIG00000016049	EIF4E (ENSCHIG00000009550)	ENSCHIG00000009913	METAP1 (ENSCHIG00000022024)	ADH5 (ENSCHIG00000025518)	ENSCHIG00000025317	ENSCHIG00000025086	ENSCHIG00000024279	ENSCHIG00000012239	ENSCHIG00000025566	ENSCHIG00000020284
Rambouillet Sheep	MODERN SPECIES	22	ENSOARG00020023436	FAM13A (ENSOARG00020022316)	LYPLA1 (ENSOARG00020022220)	TIGD2 (ENSOARG00020022196)	SNCA (ENSOARG00020022002)	MMRN1 (ENSOARG00020021960)	CCSER1 (ENSOARG00020021891)	GRID2 (ENSOARG00020021077)	ATOH1 (ENSOARG00020021038)	ENSOARG00020021032	SMARCAD1 (ENSOARG00020020813)	HPGDS (ENSOARG00020020743)	PDLIM5 (ENSOARG00020020424)	BMPR1B (ENSOARG00020020206)	UNC5C (ENSOARG00020019727)	PDHA2 (ENSOARG00020019674) ##22	ENSOARG00020019656	STPG2 (ENSOARG00020019402)	RAP1GDS1 (ENSOARG00020016868)	TSPAN5 (ENSOARG00020016727)	EIF4E (ENSOARG00020016553)	ENSOARG00020016539	METAP1 (ENSOARG00020016389)	ADH5 (ENSOARG00020016239)	ENSOARG00020016196	ADH4 (ENSOARG00020015568)	ENSOARG00020015516	ENSOARG00020015355	ENSOARG00020014854	ENSOARG00020014759	ENSOARG00020014505
Siberian musk deer	MODERN SPECIES	1270	SNCA (ENSMMSG00000018719)	MMRN1 (ENSMMSG00000018808)	CCSER1 (ENSMMSG00000018844)	ENSMMSG00000018880	ENSMMSG00000018932	ENSMMSG00000018944	GRID2 (ENSMMSG00000019011)	ATOH1 (ENSMMSG00000019342)	ENSMMSG00000019354	SMARCAD1 (ENSMMSG00000019370)	HPGDS (ENSMMSG00000019536)	PDLIM5 (ENSMMSG00000019568)	ENSMMSG00000019741	BMPR1B (ENSMMSG00000019768)	UNC5C (ENSMMSG00000019855)	PDHA2 (ENSMMSG00000020176) ##22	STPG2 (ENSMMSG00000020189)	RAP1GDS1 (ENSMMSG00000020312)	TSPAN5 (ENSMMSG00000021109)	ENSMMSG00000021164	METAP1 (ENSMMSG00000021278)	ADH5 (ENSMMSG00000021316)
Cetacea	ANCESTRAL SPECIES	12	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00390000017443.m.a	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000160756.c.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.n.b	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Odontoceti_a	ANCESTRAL SPECIES	26	ENSGT00950000183033.a.b.a	ENSGT00570000079168.b.b.b	ENSGT00390000017443.m.a	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000160756.c.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.n.b	ENSGT00940000162645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000157887
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00570000079168.b.b.b	ENSGT00390000017443.m.a	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000160756.c.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000156773.n	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.n.b	ENSGT00940000162645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000157887
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00390000017443.m.a	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000160756.c.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000154152.d.a.a.e	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000156773.n	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.lb	ENSGT00940000158205	ENSGT00940000155196.n.b	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000157887	ENSGT00900000140979.a.a.`b.b
Beluga whale	MODERN SPECIES	13	GPRIN3 (ENSDLEG00000000510)	ENSDLEG00000000521	SNCA (ENSDLEG00000000538)	MMRN1 (ENSDLEG00000000553)	ENSDLEG00000000577	CCSER1 (ENSDLEG00000000608)	ENSDLEG00000000650	GRID2 (ENSDLEG00000000678)	ENSDLEG00000000719	ATOH1 (ENSDLEG00000000728)	SMARCAD1 (ENSDLEG00000000742)	HPGDS (ENSDLEG00000000785)	PDLIM5 (ENSDLEG00000000807)	BMPR1B (ENSDLEG00000000839)	UNC5C (ENSDLEG00000000896)	ENSDLEG00000000932 ##22	ENSDLEG00000000945	STPG2 (ENSDLEG00000000965)	RAP1GDS1 (ENSDLEG00000001000)	TSPAN5 (ENSDLEG00000001033)	ENSDLEG00000001061	METAP1 (ENSDLEG00000001082)	ENSDLEG00000001104	ADH1C (ENSDLEG00000001132)	ADH7 (ENSDLEG00000001160)	TRMT10A (ENSDLEG00000001199)	MTTP (ENSDLEG00000001222)	C4orf54 (ENSDLEG00000001252)	DAPP1 (ENSDLEG00000001262)	LAMTOR3 (ENSDLEG00000001284)	DNAJB14 (ENSDLEG00000001308)
Narwhal	MODERN SPECIES	307	GPRIN3 (ENSMMNG00015011061)	ENSMMNG00015011065	SNCA (ENSMMNG00015011091)	MMRN1 (ENSMMNG00015011136)	ENSMMNG00015011167	CCSER1 (ENSMMNG00015011215)	GRID2 (ENSMMNG00015011268)	ENSMMNG00015011351	ATOH1 (ENSMMNG00015011356)	SMARCAD1 (ENSMMNG00015011369)	HPGDS (ENSMMNG00015011400)	ENSMMNG00015011412	PDLIM5 (ENSMMNG00015011438)	BMPR1B (ENSMMNG00015011501)	UNC5C (ENSMMNG00015011568)	ENSMMNG00015011637 ##22	ENSMMNG00015011656	STPG2 (ENSMMNG00015011683)	ENSMMNG00015011702	RAP1GDS1 (ENSMMNG00015011760)	TSPAN5 (ENSMMNG00015011871)	ENSMMNG00015011905	METAP1 (ENSMMNG00015011937)	ENSMMNG00015011959	ENSMMNG00015012001	ADH7 (ENSMMNG00015012075)	TRMT10A (ENSMMNG00015012194)	MTTP (ENSMMNG00015012217)	C4orf54 (ENSMMNG00015012235)	DAPP1 (ENSMMNG00015012254)	LAMTOR3 (ENSMMNG00015012285)
Camelidae	ANCESTRAL SPECIES	20					ENSGT00950000183175.B.b.e	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Arabian camel	MODERN SPECIES	11	ENSCDRG00005010793	ENSCDRG00005010708	ENSCDRG00005010544	MMRN1 (ENSCDRG00005010505)	CCSER1 (ENSCDRG00005010415)	ENSCDRG00005010381	GRID2 (ENSCDRG00005009950)	ENSCDRG00005009873	ATOH1 (ENSCDRG00005009854)	SMARCAD1 (ENSCDRG00005009588)	HPGDS (ENSCDRG00005009472)	PDLIM5 (ENSCDRG00005008970)	BMPR1B (ENSCDRG00005008805)	ENSCDRG00005008779	UNC5C (ENSCDRG00005008588)	PDHA2 (ENSCDRG00005008550) ##22	ENSCDRG00005008544	STPG2 (ENSCDRG00005008261)	RAP1GDS1 (ENSCDRG00005006817)	TSPAN5 (ENSCDRG00005006719)	ENSCDRG00005006550	METAP1 (ENSCDRG00005006507)	ADH5 (ENSCDRG00005006442)	ADH4 (ENSCDRG00005006348)	ADH6 (ENSCDRG00005006293)	ENSCDRG00005018374	ENSCDRG00005018280	ENSCDRG00005018187	C4orf17 (ENSCDRG00005018162)	TRMT10A (ENSCDRG00005018130)	MTTP (ENSCDRG00005018066)
Alpaca	MODERN SPECIES	4070																PDHA2 (ENSVPAG00000007756) ##22
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645.d	ENSGT00940000163645.c	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645.d	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Caniformia	ANCESTRAL SPECIES	7	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00950000185137	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645.d	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00950000185137	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645.d	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00950000185137	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT01030000240068	ENSGT00940000154194.n	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645.d	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a
Ursus	ANCESTRAL SPECIES	78	ENSGT00390000015889.o.b	ENSGT00940000158189.c	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00950000185137	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT01030000240068	ENSGT00940000154194.n	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645.d	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a
American black bear	MODERN SPECIES	869																PDHA2 (ENSUAMG00000028417) ##22
Polar bear	MODERN SPECIES	301	HERC3 (ENSUMAG00000004443)	NAP1L5 (ENSUMAG00000004470)	ENSUMAG00000004480	ENSUMAG00000004483	TIGD2 (ENSUMAG00000004486)	SNCA (ENSUMAG00000004496)	MMRN1 (ENSUMAG00000004502)	CCSER1 (ENSUMAG00000004506)	ENSUMAG00000004518	GRID2 (ENSUMAG00000004520)	SMARCAD1 (ENSUMAG00000004549)	HPGDS (ENSUMAG00000004558)	PDLIM5 (ENSUMAG00000004572)	BMPR1B (ENSUMAG00000004581)	UNC5C (ENSUMAG00000004642)	PDHA2 (ENSUMAG00000004811) ##22	ENSUMAG00000004814	ENSUMAG00000004817	ENSUMAG00000004827	STPG2 (ENSUMAG00000004831)	RAP1GDS1 (ENSUMAG00000004854)	TSPAN5 (ENSUMAG00000004870)	ENSUMAG00000004884	EIF4E (ENSUMAG00000004901)	METAP1 (ENSUMAG00000004916)	ENSUMAG00000004985	ADH4 (ENSUMAG00000004991)	ENSUMAG00000004998	ADH6 (ENSUMAG00000005007)	ENSUMAG00000005025	ENSUMAG00000005042
Mustelinae	ANCESTRAL SPECIES	50	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645.d	ENSGT00910000146913	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
American mink	MODERN SPECIES	179								GRID2 (ENSNVIG00000022723)	ATOH1 (ENSNVIG00000022721)	SMARCAD1 (ENSNVIG00000022706)	HPGDS (ENSNVIG00000022702)	ENSNVIG00000022681	ENSNVIG00000022674	BMPR1B (ENSNVIG00000022655)	UNC5C (ENSNVIG00000022616)	PDHA2 (ENSNVIG00000022602) ##22
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b.c	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00990000213718	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000162741.j	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.v	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b.c	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00990000213718	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000162741.j	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.v	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Tiger	MODERN SPECIES	44	NAP1L5 (ENSPTIG00000001643)	HERC3 (ENSPTIG00000018458)	FAM13A (ENSPTIG00000008748)	ENSPTIG00000007459	ENSPTIG00000006539	TIGD2 (ENSPTIG00000000899)	SNCA (ENSPTIG00000020257)	MMRN1 (ENSPTIG00000017503)	CCSER1 (ENSPTIG00000016206)	GRID2 (ENSPTIG00000009573)	SMARCAD1 (ENSPTIG00000017868)	HPGDS (ENSPTIG00000017190)	PDLIM5 (ENSPTIG00000010020)	BMPR1B (ENSPTIG00000005881)	UNC5C (ENSPTIG00000021204)	PDHA2 (ENSPTIG00000007394) ##22	ENSPTIG00000020717
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b.c	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00990000213718	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000164334	ENSGT00390000001063	ENSGT00940000169764.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.v	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
leopard	MODERN SPECIES	2	ENSPPRG00000023341	FAM13A (ENSPPRG00000003661)	TIGD2 (ENSPPRG00000020980)	ENSPPRG00000009158	MMRN1 (ENSPPRG00000010139)	ENSPPRG00000010366	CCSER1 (ENSPPRG00000011445)	ENSPPRG00000013269	GRID2 (ENSPPRG00000015579)	ATOH1 (ENSPPRG00000021578)	SMARCAD1 (ENSPPRG00000024756)	HPGDS (ENSPPRG00000024591)	PDLIM5 (ENSPPRG00000001230)	BMPR1B (ENSPPRG00000002998)	UNC5C (ENSPPRG00000005288)	PDHA2 (ENSPPRG00000014814) ##22	ENSPPRG00000005836
lion	MODERN SPECIES	4	FAM13A (ENSPLOG00000005414)	TIGD2 (ENSPLOG00000005276)	GPRIN3 (ENSPLOG00000005268)	ENSPLOG00000005237	ENSPLOG00000005216	MMRN1 (ENSPLOG00000005200)	CCSER1 (ENSPLOG00000005067)	ENSPLOG00000004937	GRID2 (ENSPLOG00000004887)	ATOH1 (ENSPLOG00000004819)	SMARCAD1 (ENSPLOG00000004798)	HPGDS (ENSPLOG00000004773)	PDLIM5 (ENSPLOG00000004717)	BMPR1B (ENSPLOG00000004675)	UNC5C (ENSPLOG00000015776)	PDHA2 (ENSPLOG00000015738) ##22	ENSPLOG00000015714	ENSPLOG00000015670	STPG2 (ENSPLOG00000015441)	ENSPLOG00000015383	RAP1GDS1 (ENSPLOG00000014798)	TSPAN5 (ENSPLOG00000014715)	ENSPLOG00000014450	METAP1 (ENSPLOG00000014301)	ADH5 (ENSPLOG00000014176)	ADH4 (ENSPLOG00000013933)	ENSPLOG00000013817	ENSPLOG00000013559	ENSPLOG00000013506	C4orf17 (ENSPLOG00000013399)	TRMT10A (ENSPLOG00000013353)
Cat	MODERN SPECIES	235	GPRIN3 (ENSFCAG00000003595)	ENSFCAG00000011488	MMRN1 (ENSFCAG00000013040)	ENSFCAG00000046968	CCSER1 (ENSFCAG00000039277)	ENSFCAG00000050813	GRID2 (ENSFCAG00000023738)	ATOH1 (ENSFCAG00000043156)	ENSFCAG00000050732	ENSFCAG00000051642	SMARCAD1 (ENSFCAG00000003958)	HPGDS (ENSFCAG00000003961)	PDLIM5 (ENSFCAG00000026158)	BMPR1B (ENSFCAG00000022227)	UNC5C (ENSFCAG00000015085)	PDHA2 (ENSFCAG00000007840) ##22	ENSFCAG00000039719	STPG2 (ENSFCAG00000040357)	RAP1GDS1 (ENSFCAG00000029098)	TSPAN5 (ENSFCAG00000014131)	EIF4E (ENSFCAG00000009949)	ENSFCAG00000048389	METAP1 (ENSFCAG00000004994)	ADH5 (ENSFCAG00000005005)	ADH4 (ENSFCAG00000005009)	ENSFCAG00000023025	ENSFCAG00000030205	CB1H4orf17 (ENSFCAG00000004690)	TRMT10A (ENSFCAG00000029521)	MTTP (ENSFCAG00000029668)	CB1H4orf54 (ENSFCAG00000022924)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645.d	ENSGT00910000146913	ENSGT00940000163645.c	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a
Equus	ANCESTRAL SPECIES	12	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00950000185040	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645.f
Donkey	MODERN SPECIES	22	TIGD2 (ENSEASG00005025658)	GPRIN3 (ENSEASG00005025420)	SNCA (ENSEASG00005012463)	MMRN1 (ENSEASG00005012461)	CCSER1 (ENSEASG00005012456)	GRID2 (ENSEASG00005012448)	ATOH1 (ENSEASG00005032994)	ENSEASG00005012443	SMARCAD1 (ENSEASG00005012382)	HPGDS (ENSEASG00005035579)	ENSEASG00005038252	ENSEASG00005034139	ENSEASG00005012343	BMPR1B (ENSEASG00005012334)	UNC5C (ENSEASG00005010826)	PDHA2 (ENSEASG00005032458) ##22	STPG2 (ENSEASG00005010801)	RAP1GDS1 (ENSEASG00005010800)	TSPAN5 (ENSEASG00005010799)	EIF4E (ENSEASG00005010796)	METAP1 (ENSEASG00005010793)	ADH5 (ENSEASG00005010792)	ENSEASG00005033783	ENSEASG00005026826	ENSEASG00005029981	ENSEASG00005023780	ENSEASG00005024286	ENSEASG00005018128	ENSEASG00005032616	ENSEASG00005029850	ENSEASG00005030579
Horse	MODERN SPECIES	22	GPRIN3 (ENSECAG00000033602)	SNCA (ENSECAG00000015766)	MMRN1 (ENSECAG00000011719)	CCSER1 (ENSECAG00000011463)	ENSECAG00000052166	ENSECAG00000055367	ENSECAG00000032304	GRID2 (ENSECAG00000022031)	ATOH1 (ENSECAG00000001213)	ENSECAG00000048467	SMARCAD1 (ENSECAG00000011562)	HPGDS (ENSECAG00000005730)	PDLIM5 (ENSECAG00000016733)	BMPR1B (ENSECAG00000012140)	UNC5C (ENSECAG00000019085)	PDHA2 (ENSECAG00000039979) ##22	STPG2 (ENSECAG00000026915)	RAP1GDS1 (ENSECAG00000020913)	TSPAN5 (ENSECAG00000014022)	EIF4E (ENSECAG00000006472)	METAP1 (ENSECAG00000017967)	ADH5 (ENSECAG00000038523)	ENSECAG00000033181	ENSECAG00000032577	ENSECAG00000015328	ENSECAG00000036418	ENSECAG00000032134	ENSECAG00000019267	ENSECAG00000039123	ENSECAG00000035069	ENSECAG00000034047
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645.d	ENSGT00910000146913	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645.d	ENSGT00910000146913	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Greater horseshoe bat	MODERN SPECIES	23	FAM13A (ENSRFEG00010004628)	TIGD2 (ENSRFEG00010004701)	GPRIN3 (ENSRFEG00010004704)	SNCA (ENSRFEG00010004726)	MMRN1 (ENSRFEG00010004758)	CCSER1 (ENSRFEG00010004775)	GRID2 (ENSRFEG00010004827)	ENSRFEG00010004855	ENSRFEG00010004858	ATOH1 (ENSRFEG00010004870)	SMARCAD1 (ENSRFEG00010000277)	HPGDS (ENSRFEG00010000305)	PDLIM5 (ENSRFEG00010000474)	BMPR1B (ENSRFEG00010000616)	UNC5C (ENSRFEG00010000732)	PDHA2 (ENSRFEG00010000804) ##22	STPG2 (ENSRFEG00010000828)	ENSRFEG00010000881	RAP1GDS1 (ENSRFEG00010000934)	TSPAN5 (ENSRFEG00010001157)	ENSRFEG00010001235	METAP1 (ENSRFEG00010001278)	ADH5 (ENSRFEG00010001303)	ADH4 (ENSRFEG00010001364)	ADH6 (ENSRFEG00010001432)	ENSRFEG00010001455	ENSRFEG00010001469	ENSRFEG00010001500	ENSRFEG00010001566	C4orf17 (ENSRFEG00010001639)	TRMT10A (ENSRFEG00010001680)
Microbat	MODERN SPECIES	949	FAM13A (ENSMLUG00000012281)	ENSMLUG00000022411	SNCA (ENSMLUG00000008577)	MMRN1 (ENSMLUG00000000231)	CCSER1 (ENSMLUG00000013655)	ENSMLUG00000023642	ENSMLUG00000028227	ENSMLUG00000029344	GRID2 (ENSMLUG00000013810)	ATOH1 (ENSMLUG00000008044)	SMARCAD1 (ENSMLUG00000000425)	HPGDS (ENSMLUG00000000432)	PDLIM5 (ENSMLUG00000002083)	BMPR1B (ENSMLUG00000009090)	UNC5C (ENSMLUG00000009105)	PDHA2 (ENSMLUG00000014449) ##22
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Primates	ANCESTRAL SPECIES	10	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000155234.b.k.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000154550.a.f.h	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000155234.b.k.b	ENSGT00940000162708	ENSGT00510000048844
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000156724.b	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00940000154550.a.f.h	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000155234.b.k.b	ENSGT00940000162708	ENSGT00510000048844
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000156724.b	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000155234.b.k.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a
Pan	ANCESTRAL SPECIES	7	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000156724.b	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000004755.j.a	ENSGT00940000154550.a.f.h	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844
Chimpanzee	MODERN SPECIES	17	NAP1L5 (ENSPTRG00000016277)	FAM13A (ENSPTRG00000016278)	TIGD2 (ENSPTRG00000031142)	GPRIN3 (ENSPTRG00000048747)	SNCA (ENSPTRG00000052247)	MMRN1 (ENSPTRG00000016284)	CCSER1 (ENSPTRG00000016285)	ENSPTRG00000042128	GRID2 (ENSPTRG00000016287)	ATOH1 (ENSPTRG00000031141)	SMARCAD1 (ENSPTRG00000023126)	HPGDS (ENSPTRG00000016291)	PDLIM5 (ENSPTRG00000016292)	BMPR1B (ENSPTRG00000016293)	UNC5C (ENSPTRG00000016296)	PDHA2 (ENSPTRG00000016297) ##22	ENSPTRG00000048065	ENSPTRG00000018353	STPG2 (ENSPTRG00000016298)	RAP1GDS1 (ENSPTRG00000016299)	TSPAN5 (ENSPTRG00000016300)	EIF4E (ENSPTRG00000016301)	METAP1 (ENSPTRG00000016302)	ADH5 (ENSPTRG00000016303)	ADH4 (ENSPTRG00000024240)	ADH6 (ENSPTRG00000016304)	ENSPTRG00000051658	ADH1A (ENSPTRG00000041356)	ADH1B (ENSPTRG00000039360)	ADH7 (ENSPTRG00000049233)	C4H4orf17 (ENSPTRG00000016306)
Bonobo	MODERN SPECIES	17	ENSPPAG00000040579	FAM13A (ENSPPAG00000001057)	TIGD2 (ENSPPAG00000037756)	GPRIN3 (ENSPPAG00000020409)	SNCA (ENSPPAG00000025110)	MMRN1 (ENSPPAG00000042454)	CCSER1 (ENSPPAG00000037530)	ENSPPAG00000038508	GRID2 (ENSPPAG00000029144)	ATOH1 (ENSPPAG00000023742)	SMARCAD1 (ENSPPAG00000035715)	HPGDS (ENSPPAG00000039873)	ENSPPAG00000034155	BMPR1B (ENSPPAG00000023623)	UNC5C (ENSPPAG00000041387)	PDHA2 (ENSPPAG00000018821) ##22	ENSPPAG00000024086	ENSPPAG00000002103	STPG2 (ENSPPAG00000043013)	RAP1GDS1 (ENSPPAG00000029979)	TSPAN5 (ENSPPAG00000043859)	ENSPPAG00000043652	METAP1 (ENSPPAG00000037565)	ADH5 (ENSPPAG00000028876)	ADH4 (ENSPPAG00000042651)	ADH6 (ENSPPAG00000035919)	ENSPPAG00000033370	ADH1A (ENSPPAG00000018178)	ADH1C (ENSPPAG00000037337)	ADH7 (ENSPPAG00000027401)	C4orf17 (ENSPPAG00000003693)
Human	MODERN SPECIES	16	HERC3 (ENSG00000138641)	NAP1L5 (ENSG00000177432)	FAM13A (ENSG00000138640)	TIGD2 (ENSG00000180346)	GPRIN3 (ENSG00000185477)	SNCA (ENSG00000145335)	MMRN1 (ENSG00000138722)	CCSER1 (ENSG00000184305)	GRID2 (ENSG00000152208)	ATOH1 (ENSG00000172238)	SMARCAD1 (ENSG00000163104)	HPGDS (ENSG00000163106)	PDLIM5 (ENSG00000163110)	BMPR1B (ENSG00000138696)	UNC5C (ENSG00000182168)	PDHA2 (ENSG00000163114) ##22	STPG2 (ENSG00000163116)	RAP1GDS1 (ENSG00000138698)	TSPAN5 (ENSG00000168785)	EIF4E (ENSG00000151247)	METAP1 (ENSG00000164024)	ADH5 (ENSG00000197894)	ADH4 (ENSG00000198099)	ADH6 (ENSG00000172955)	ADH1A (ENSG00000187758)	ADH1B (ENSG00000196616)	ADH1C (ENSG00000248144)	ADH7 (ENSG00000196344)	C4orf17 (ENSG00000138813)	TRMT10A (ENSG00000145331)	MTTP (ENSG00000138823)
Gorilla	MODERN SPECIES	17	ENSGGOG00000023308	FAM13A (ENSGGOG00000024484)	TIGD2 (ENSGGOG00000026736)	GPRIN3 (ENSGGOG00000041041)	SNCA (ENSGGOG00000005705)	MMRN1 (ENSGGOG00000007582)	CCSER1 (ENSGGOG00000014053)	ENSGGOG00000022251	GRID2 (ENSGGOG00000000378)	ATOH1 (ENSGGOG00000001096)	SMARCAD1 (ENSGGOG00000023001)	HPGDS (ENSGGOG00000012876)	ENSGGOG00000024845	BMPR1B (ENSGGOG00000012093)	UNC5C (ENSGGOG00000012106)	PDHA2 (ENSGGOG00000013755) ##22	ENSGGOG00000025268	STPG2 (ENSGGOG00000042664)	RAP1GDS1 (ENSGGOG00000004556)	TSPAN5 (ENSGGOG00000023379)	ENSGGOG00000004718	ENSGGOG00000038033	METAP1 (ENSGGOG00000001520)	ADH5 (ENSGGOG00000028244)	ENSGGOG00000025893	ADH6 (ENSGGOG00000001080)	ENSGGOG00000039548	ADH1A (ENSGGOG00000017154)	ENSGGOG00000038227	ADH1C (ENSGGOG00000011864)	ADH7 (ENSGGOG00000036716)
Orangutan	MODERN SPECIES	17	HERC3 (ENSPPYG00000014927)	NAP1L5 (ENSPPYG00000038351)	FAM13A (ENSPPYG00000014928)	TIGD2 (ENSPPYG00000014930)	GPRIN3 (ENSPPYG00000014931)	SNCA (ENSPPYG00000014932)	MMRN1 (ENSPPYG00000014933)	CCSER1 (ENSPPYG00000033690)	GRID2 (ENSPPYG00000014934)	ATOH1 (ENSPPYG00000015283)	SMARCAD1 (ENSPPYG00000014935)	HPGDS (ENSPPYG00000014936)	ENSPPYG00000014937	BMPR1B (ENSPPYG00000014938)	UNC5C (ENSPPYG00000014939)	PDHA2 (ENSPPYG00000014940) ##22	ENSPPYG00000029937	STPG2 (ENSPPYG00000014941)	ENSPPYG00000032768	RAP1GDS1 (ENSPPYG00000014942)	TSPAN5 (ENSPPYG00000014943)	EIF4E (ENSPPYG00000031353)	METAP1 (ENSPPYG00000014945)	ADH5 (ENSPPYG00000014946)	ADH4 (ENSPPYG00000014947)	ADH6 (ENSPPYG00000014948)	ADH1A (ENSPPYG00000014949)	ADH1C (ENSPPYG00000037917)	ADH7 (ENSPPYG00000014950)	C4orf17 (ENSPPYG00000014951)	TRMT10A (ENSPPYG00000014952)
Gibbon	MODERN SPECIES	24	HERC3 (ENSNLEG00000009752)	ENSNLEG00000018566	FAM13A (ENSNLEG00000009768)	TIGD2 (ENSNLEG00000009788)	GPRIN3 (ENSNLEG00000018567)	SNCA (ENSNLEG00000014352)	MMRN1 (ENSNLEG00000014338)	CCSER1 (ENSNLEG00000014329)	GRID2 (ENSNLEG00000014296)	ATOH1 (ENSNLEG00000018621)	SMARCAD1 (ENSNLEG00000014225)	HPGDS (ENSNLEG00000014213)	ENSNLEG00000014166	BMPR1B (ENSNLEG00000014109)	UNC5C (ENSNLEG00000014104)	PDHA2 (ENSNLEG00000018620) ##22	ENSNLEG00000029353	STPG2 (ENSNLEG00000014101)	RAP1GDS1 (ENSNLEG00000014011)	ENSNLEG00000030569	ENSNLEG00000028250	ENSNLEG00000014006	ENSNLEG00000028241	METAP1 (ENSNLEG00000013990)	ADH5 (ENSNLEG00000013946)	ADH4 (ENSNLEG00000013918)	ADH6 (ENSNLEG00000013891)	ENSNLEG00000033673	ADH1A (ENSNLEG00000026678)	ADH1B (ENSNLEG00000027230)	ADH7 (ENSNLEG00000013846)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000158189	ENSGT00940000153593.c.b.e	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000158189	ENSGT00940000153593.c.b.e	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000162313	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000158189	ENSGT00940000153593.c.b.e	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000162313	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a.a
Macaca	ANCESTRAL SPECIES	18	ENSGT00940000158189	ENSGT00940000153593.c.b.e	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000162313	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.c	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a.a
Pig-tailed macaque	MODERN SPECIES	326														BMPR1B (ENSMNEG00000040496)	UNC5C (ENSMNEG00000029511)	PDHA2 (ENSMNEG00000037788) ##22
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT01100000263539.b.a.a.b.a	ENSGT01100000263543.a.g.a.a.b	ENSGT01100000263493.a.b.a.a.a.b.a.a.a.a.a.a	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a.c	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645	ENSGT00940000155234.b.k.a.a	ENSGT00940000155234.b.k.a.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a.a	ENSGT00390000011412
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000060716	ENSMFAG00000059341	GRID2 (ENSMFAG00000043573)	ENSMFAG00000053456	ENSMFAG00000064712	ENSMFAG00000048174	ENSMFAG00000049298	SMARCAD1 (ENSMFAG00000042606)	HPGDS (ENSMFAG00000044963)	ENSMFAG00000054971	PDLIM5 (ENSMFAG00000030301)	ENSMFAG00000055307	BMPR1B (ENSMFAG00000037039)	UNC5C (ENSMFAG00000026235)	ENSMFAG00000064664	PDHA2 (ENSMFAG00000028491) ##22	ENSMFAG00000053892	STPG2 (ENSMFAG00000003718)	RAP1GDS1 (ENSMFAG00000000128)	TSPAN5 (ENSMFAG00000002966)	EIF4E (ENSMFAG00000041112)	METAP1 (ENSMFAG00000041798)	ENSMFAG00000030598	ADH5 (ENSMFAG00000044468)	ADH4 (ENSMFAG00000003884)	ENSMFAG00000050348	ADH6 (ENSMFAG00000003019)	ADH1B (ENSMFAG00000001617)	ADH1A (ENSMFAG00000039788)	ADH7 (ENSMFAG00000039572)	C4orf17 (ENSMFAG00000037946)
Rhesus	MODERN SPECIES	15	MMRN1 (ENSMMUG00000022003)	ENSMMUG00000063123	CCSER1 (ENSMMUG00000009652)	ENSMMUG00000061992	GRID2 (ENSMMUG00000002366)	ENSMMUG00000053709	ENSMMUG00000055876	ENSMMUG00000055347	ENSMMUG00000049525	ATOH1 (ENSMMUG00000002367)	SMARCAD1 (ENSMMUG00000022242)	HPGDS (ENSMMUG00000022244)	PDLIM5 (ENSMMUG00000022246)	BMPR1B (ENSMMUG00000006702)	UNC5C (ENSMMUG00000006309)	PDHA2 (ENSMMUG00000021359) ##22	ENSMMUG00000064186	STPG2 (ENSMMUG00000013502)	ENSMMUG00000064386	RAP1GDS1 (ENSMMUG00000022417)	TSPAN5 (ENSMMUG00000011702)	EIF4E (ENSMMUG00000011066)	METAP1 (ENSMMUG00000011062)	ADH5 (ENSMMUG00000003552)	ADH4 (ENSMMUG00000011059)	ENSMMUG00000053868	ADH6 (ENSMMUG00000015966)	ADH1A (ENSMMUG00000040764)	ADH1B (ENSMMUG00000018738)	C5H4orf17 (ENSMMUG00000009089)	TRMT10A (ENSMMUG00000056735)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00390000010721.a.a.a.a.c.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00940000153168.C.a.b	ENSGT00940000161041	ENSGT00940000159219	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00390000008346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a	ENSGT00940000157306	ENSGT00390000000002.a.a.a	ENSGT00940000157352
Olive baboon	MODERN SPECIES	13	MMRN1 (ENSPANG00000022092)	CCSER1 (ENSPANG00000023715)	ENSPANG00000051085	GRID2 (ENSPANG00000009186)	ENSPANG00000046446	ENSPANG00000051321	ENSPANG00000030511	ENSPANG00000045919	SMARCAD1 (ENSPANG00000019757)	HPGDS (ENSPANG00000017690)	ENSPANG00000037029	ENSPANG00000004585	ENSPANG00000044230	BMPR1B (ENSPANG00000008235)	UNC5C (ENSPANG00000000905)	PDHA2 (ENSPANG00000026247) ##22	STPG2 (ENSPANG00000009976)	ENSPANG00000038256	YIPF7 (ENSPANG00000016828)	KCTD8 (ENSPANG00000017025)	ENSPANG00000047071	ENSPANG00000034872	GRXCR1 (ENSPANG00000021591)	ENSPANG00000037932	ATP8A1 (ENSPANG00000011786)	SHISA3 (ENSPANG00000025579)	ENSPANG00000041009	ENSPANG00000048230	BEND4 (ENSPANG00000016087)	SLC30A9 (ENSPANG00000024558)	ENSPANG00000017113
Cercopithecinae_d	ANCESTRAL SPECIES	232								ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00390000010721.a.a.a.a.c.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22
Drill	MODERN SPECIES	1132														BMPR1B (ENSMLEG00000033544)	UNC5C (ENSMLEG00000041565)	PDHA2 (ENSMLEG00000027171) ##22
Sooty mangabey	MODERN SPECIES	380							GRID2 (ENSCATG00000033632)	ATOH1 (ENSCATG00000015626)	ENSCATG00000017159	ENSCATG00000043395	SMARCAD1 (ENSCATG00000035663)	HPGDS (ENSCATG00000032070)	PDLIM5 (ENSCATG00000023469)	BMPR1B (ENSCATG00000029503)	UNC5C (ENSCATG00000035452)	PDHA2 (ENSCATG00000014867) ##22
Vervet Monkey	MODERN SPECIES	26	TIGD2 (ENSCSAG00000000410)	GPRIN3 (ENSCSAG00000000409)	SNCA (ENSCSAG00000004228)	MMRN1 (ENSCSAG00000004223)	ENSCSAG00000004217	ENSCSAG00000004212	ENSCSAG00000004207	ENSCSAG00000004205	ENSCSAG00000004203	ATOH1 (ENSCSAG00000000408)	SMARCAD1 (ENSCSAG00000004186)	HPGDS (ENSCSAG00000004182)	PDLIM5 (ENSCSAG00000004173)	BMPR1B (ENSCSAG00000004147)	UNC5C (ENSCSAG00000004138)	PDHA2 (ENSCSAG00000000407) ##22	STPG2 (ENSCSAG00000004134)	RAP1GDS1 (ENSCSAG00000004128)	ENSCSAG00000000406	TSPAN5 (ENSCSAG00000004123)	EIF4E (ENSCSAG00000004122)	METAP1 (ENSCSAG00000004120)	ADH5 (ENSCSAG00000004118)	ADH4 (ENSCSAG00000004116)	ADH6 (ENSCSAG00000004112)	ADH1B (ENSCSAG00000004110)	ADH7 (ENSCSAG00000004106)	C4orf17 (ENSCSAG00000004103)	TRMT10A (ENSCSAG00000004098)	MTTP (ENSCSAG00000004095)	C4orf54 (ENSCSAG00000000405)
Rhinopithecus	ANCESTRAL SPECIES	462									ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376
Golden snub-nosed monkey	MODERN SPECIES	2528									GRID2 (ENSRROG00000039825)	ATOH1 (ENSRROG00000005018)	SMARCAD1 (ENSRROG00000035309)	HPGDS (ENSRROG00000005175)	PDLIM5 (ENSRROG00000032186)	BMPR1B (ENSRROG00000034293)	UNC5C (ENSRROG00000020023)	PDHA2 (ENSRROG00000037870) ##22
Black snub-nosed monkey	MODERN SPECIES	524								GRID2 (ENSRBIG00000044986)	ATOH1 (ENSRBIG00000025496)	SMARCAD1 (ENSRBIG00000041989)	HPGDS (ENSRBIG00000032193)	ENSRBIG00000027918	PDLIM5 (ENSRBIG00000022095)	BMPR1B (ENSRBIG00000041265)	UNC5C (ENSRBIG00000042089)	PDHA2 (ENSRBIG00000016800) ##22	STPG2 (ENSRBIG00000025937)	RAP1GDS1 (ENSRBIG00000032597)	TSPAN5 (ENSRBIG00000036088)	ENSRBIG00000039027	METAP1 (ENSRBIG00000036694)	ADH5 (ENSRBIG00000044755)	ADH4 (ENSRBIG00000040217)	ENSRBIG00000040531	ADH6 (ENSRBIG00000014607)
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00390000015889	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00940000163645	ENSGT00910000146913	ENSGT00940000155234.b.m.a	ENSGT00940000155234.b.m.b.a	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000015889	ENSGT00730000111564	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000155234.b.m.a	ENSGT00940000155234.b.m.b.a	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Marmoset	MODERN SPECIES	15	MMRN1 (ENSCJAG00000006712)	ENSCJAG00000074389	ENSCJAG00000081344	CCSER1 (ENSCJAG00000006723)	ENSCJAG00000080553	ENSCJAG00000084875	GRID2 (ENSCJAG00000006737)	ATOH1 (ENSCJAG00000022028)	SMARCAD1 (ENSCJAG00000006778)	HPGDS (ENSCJAG00000006866)	ENSCJAG00000073326	PDLIM5 (ENSCJAG00000006882)	ENSCJAG00000081948	BMPR1B (ENSCJAG00000006930)	UNC5C (ENSCJAG00000006998)	PDHA2 (ENSCJAG00000022029) ##22	ENSCJAG00000074354	STPG2 (ENSCJAG00000007049)	ENSCJAG00000079273	RAP1GDS1 (ENSCJAG00000007058)	TSPAN5 (ENSCJAG00000007128)	EIF4E (ENSCJAG00000007151)	METAP1 (ENSCJAG00000007178)	ENSCJAG00000007198	ADH4 (ENSCJAG00000007244)	ENSCJAG00000080110	ENSCJAG00000076576	ENSCJAG00000015102	C4orf17 (ENSCJAG00000015119)	TRMT10A (ENSCJAG00000041587)	MTTP (ENSCJAG00000015144)
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274	ENSGT00390000013159
Bushbaby	MODERN SPECIES	252											ATOH1 (ENSOGAG00000030783)	SMARCAD1 (ENSOGAG00000011444)	PDLIM5 (ENSOGAG00000011454)	BMPR1B (ENSOGAG00000003063)	UNC5C (ENSOGAG00000003065)	PDHA2 (ENSOGAG00000030453) ##22	RAP1GDS1 (ENSOGAG00000006268)	TSPAN5 (ENSOGAG00000006272)	ENSOGAG00000001131	ENSOGAG00000015636	ADH5 (ENSOGAG00000015640)	ADH4 (ENSOGAG00000015642)	ENSOGAG00000015644	ENSOGAG00000025143	ADH7 (ENSOGAG00000014567)	C4orf17 (ENSOGAG00000005332)	ENSOGAG00000005330	MTTP (ENSOGAG00000005331)	C4orf54 (ENSOGAG00000034835)	DAPP1 (ENSOGAG00000005335)	LAMTOR3 (ENSOGAG00000005336)
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00530000063174.a.j ##22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00530000063174.a.j ##22
Greater bamboo lemur	MODERN SPECIES	247												ENSPSMG00000025581	TSPAN5 (ENSPSMG00000025577)	RAP1GDS1 (ENSPSMG00000025572)	STPG2 (ENSPSMG00000025553)	ENSPSMG00000025549 ##22	UNC5C (ENSPSMG00000025546)	BMPR1B (ENSPSMG00000025525)	PDLIM5 (ENSPSMG00000025509)	HPGDS (ENSPSMG00000025446)	SMARCAD1 (ENSPSMG00000025438)	ATOH1 (ENSPSMG00000025426)	GRID2 (ENSPSMG00000025424)	ENSPSMG00000025397
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Glires	ANCESTRAL SPECIES	8	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00530000063174.a.j ##22
Rabbit	MODERN SPECIES	6	CCSER1 (ENSOCUG00000001300)	ENSOCUG00000038538	ENSOCUG00000035160	ENSOCUG00000033357	ENSOCUG00000035857	GRID2 (ENSOCUG00000011440)	ATOH1 (ENSOCUG00000013154)	SMARCAD1 (ENSOCUG00000017283)	HPGDS (ENSOCUG00000017300)	ENSOCUG00000033747	PDLIM5 (ENSOCUG00000009746)	ENSOCUG00000039543	BMPR1B (ENSOCUG00000015048)	UNC5C (ENSOCUG00000015054)	ENSOCUG00000036294	PDHA2 (ENSOCUG00000002546) ##22	ENSOCUG00000028212	ENSOCUG00000021917	STPG2 (ENSOCUG00000029560)	RAP1GDS1 (ENSOCUG00000016535)	TSPAN5 (ENSOCUG00000016552)	ENSOCUG00000014372	ENSOCUG00000011845	ENSOCUG00000033260	ENSOCUG00000001456	METAP1 (ENSOCUG00000004258)	ADH5 (ENSOCUG00000004263)	ADH4 (ENSOCUG00000023401)	ENSOCUG00000037547	ENSOCUG00000029646	ADH6 (ENSOCUG00000033073)
Pika	MODERN SPECIES	10358																PDHA2 (ENSOPRG00000013900) ##22
Rodentia	ANCESTRAL SPECIES	13	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Myomorpha	ANCESTRAL SPECIES	42													ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Muroidea	ANCESTRAL SPECIES	53													ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000156840.a.b	ENSGT00940000156840.b.w	ENSGT00940000163522.A.g.a	ENSGT00940000156840.b.x	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000156840.a.b	ENSGT00940000156840.b.x	ENSGT00940000156840.b.w	ENSGT00940000163522.A.g.a	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000156840.a.b	ENSGT00940000156840.b.x	ENSGT00940000156840.b.w	ENSGT00940000163522.A.g.a	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000031096	ENSPEMG00000028796	ENSPEMG00000026457	ENSPEMG00000028416	ENSPEMG00000028917	ENSPEMG00000021664	Gbp2 (ENSPEMG00000014377)	Gbp2b (ENSPEMG00000021955)	ENSPEMG00000029463	Gbp3 (ENSPEMG00000020366)	Gbp7 (ENSPEMG00000020532)	Gbp5 (ENSPEMG00000017654)	Pdlim5 (ENSPEMG00000000844)	Bmpr1b (ENSPEMG00000012954)	Unc5c (ENSPEMG00000020337)	Pdha2 (ENSPEMG00000015169) ##22	Stpg2 (ENSPEMG00000022992)	Rap1gds1 (ENSPEMG00000015670)	Tspan5 (ENSPEMG00000023594)	ENSPEMG00000023956	Metap1 (ENSPEMG00000023712)	Adh5 (ENSPEMG00000024078)	Adh4 (ENSPEMG00000017427)	ENSPEMG00000029521	Adh6b (ENSPEMG00000006239)	Adh6a (ENSPEMG00000000326)	Adh7 (ENSPEMG00000003478)	4930579F01Rik (ENSPEMG00000006959)	Trmt10a (ENSPEMG00000011113)	Mttp (ENSPEMG00000013372)	1110002E22Rik (ENSPEMG00000016355)
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000163522.A.g.a	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Chinese hamster chok1gshd	MODERN SPECIES	66									Gbp2 (ENSCGRG00001023495)	Gbp3 (ENSCGRG00001022090)	Gbp7 (ENSCGRG00001000702)	Gbp5 (ENSCGRG00001014326)	Pdlim5 (ENSCGRG00001025015)	Bmpr1b (ENSCGRG00001019865)	Unc5c (ENSCGRG00001024324)	Pdha2 (ENSCGRG00001012024) ##22	Stpg2 (ENSCGRG00001011952)	ENSCGRG00001006395	Rap1gds1 (ENSCGRG00001017066)	Tspan5 (ENSCGRG00001001260)	ENSCGRG00001000181	Metap1 (ENSCGRG00001002302)	Adh5 (ENSCGRG00001000437)	Adh6b (ENSCGRG00001011022)	ENSCGRG00001012224	Adh6a (ENSCGRG00001013383)	ENSCGRG00001000595	ENSCGRG00001017351	Adh7 (ENSCGRG00001008109)	4930579F01Rik (ENSCGRG00001000415)	Trmt10a (ENSCGRG00001020257)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000156840.a.b	ENSGT00940000156840.b.w	ENSGT00940000163522.A.g.a	ENSGT00940000156840.b.x	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Mus	ANCESTRAL SPECIES	7	ENSGT00940000155667	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000155667	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292.j	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000155667	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292.j	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Mouse	MODERN SPECIES	12	Sh3glb1 (ENSMUSG00000037062)	Selenof (ENSMUSG00000037072)	Hs2st1 (ENSMUSG00000040151)	Lmo4 (ENSMUSG00000028266)	Pkn2 (ENSMUSG00000004591)	Gtf2b (ENSMUSG00000028271)	Kyat3 (ENSMUSG00000040213)	Gbp2 (ENSMUSG00000028270)	Gbp2b (ENSMUSG00000040264)	Gbp3 (ENSMUSG00000028268)	Gbp7 (ENSMUSG00000040253)	Gbp5 (ENSMUSG00000105504)	Pdlim5 (ENSMUSG00000028273)	Bmpr1b (ENSMUSG00000052430)	Unc5c (ENSMUSG00000059921)	Pdha2 (ENSMUSG00000047674) ##22	Stpg2 (ENSMUSG00000047940)	Rap1gds1 (ENSMUSG00000028149)	Tspan5 (ENSMUSG00000028152)	Eif4e (ENSMUSG00000028156)	Metap1 (ENSMUSG00000005813)	Adh5 (ENSMUSG00000028138)	Adh4 (ENSMUSG00000037797)	Adh6b (ENSMUSG00000074206)	Adh6a (ENSMUSG00000053054)	Adh1 (ENSMUSG00000074207)	Adh7 (ENSMUSG00000055301)	4930579F01Rik (ENSMUSG00000012042)	Trmt10a (ENSMUSG00000004127)	Mttp (ENSMUSG00000028158)	1110002E22Rik (ENSMUSG00000090066)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000155667	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000162297.k	ENSGT00940000162297.l	ENSGT00940000163522.B	ENSGT00940000163522.A.h	ENSGT00940000162684	ENSGT00940000155292.j	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a	ENSGT00940000154194.dd	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Steppe mouse	MODERN SPECIES	2991													Pdlim5 (ENSMSIG00000025976)	Bmpr1b (ENSMSIG00000025934)	Unc5c (ENSMSIG00000025797)	Pdha2 (ENSMSIG00000025778) ##22
spretus	MODERN SPECIES	12	Sh3glb1 (MGP_SPRETEiJ_G0026658)	MGP_SPRETEiJ_G0026657	Hs2st1 (MGP_SPRETEiJ_G0026656)	Lmo4 (MGP_SPRETEiJ_G0026655)	Pkn2 (MGP_SPRETEiJ_G0026654)	Gtf2b (MGP_SPRETEiJ_G0026653)	Kyat3 (MGP_SPRETEiJ_G0026652)	Gbp2 (MGP_SPRETEiJ_G0026651)	MGP_SPRETEiJ_G0026650	Gbp3 (MGP_SPRETEiJ_G0026649)	Gbp7 (MGP_SPRETEiJ_G0026648)	Gbp5 (MGP_SPRETEiJ_G0026647)	Pdlim5 (MGP_SPRETEiJ_G0026646)	Bmpr1b (MGP_SPRETEiJ_G0026645)	Unc5c (MGP_SPRETEiJ_G0026644)	Pdha2 (MGP_SPRETEiJ_G0026643) ##22	Stpg2 (MGP_SPRETEiJ_G0026642)	Rap1gds1 (MGP_SPRETEiJ_G0026641)	MGP_SPRETEiJ_G0026640	Eif4e (MGP_SPRETEiJ_G0026639)	Metap1 (MGP_SPRETEiJ_G0026638)	Adh5 (MGP_SPRETEiJ_G0026637)	Adh4 (MGP_SPRETEiJ_G0026636)	Adh6a (MGP_SPRETEiJ_G0026635)	Adh1 (MGP_SPRETEiJ_G0026634)	Adh7 (MGP_SPRETEiJ_G0026633)	4930579F01Rik (MGP_SPRETEiJ_G0026632)	Trmt10a (MGP_SPRETEiJ_G0026631)	Mttp (MGP_SPRETEiJ_G0026630)	1110002E22Rik (MGP_SPRETEiJ_G0026629)	MGP_SPRETEiJ_G0026628
Ryukyu mouse	MODERN SPECIES	12	Sh3glb1 (MGP_CAROLIEiJ_G0025703)	MGP_CAROLIEiJ_G0025702	Hs2st1 (MGP_CAROLIEiJ_G0025701)	Lmo4 (MGP_CAROLIEiJ_G0025700)	Pkn2 (MGP_CAROLIEiJ_G0025699)	Gtf2b (MGP_CAROLIEiJ_G0025698)	Kyat3 (MGP_CAROLIEiJ_G0025697)	Gbp2 (MGP_CAROLIEiJ_G0025696)	Gbp2b (MGP_CAROLIEiJ_G0025695)	MGP_CAROLIEiJ_G0025694	Gbp7 (MGP_CAROLIEiJ_G0025693)	Gbp5 (MGP_CAROLIEiJ_G0025692)	Pdlim5 (MGP_CAROLIEiJ_G0025691)	Bmpr1b (MGP_CAROLIEiJ_G0025690)	Unc5c (MGP_CAROLIEiJ_G0025689)	Pdha2 (MGP_CAROLIEiJ_G0025688) ##22	Stpg2 (MGP_CAROLIEiJ_G0025687)	Rap1gds1 (MGP_CAROLIEiJ_G0025686)	Tspan5 (MGP_CAROLIEiJ_G0025685)	Eif4e (MGP_CAROLIEiJ_G0025684)	Metap1 (MGP_CAROLIEiJ_G0025683)	MGP_CAROLIEiJ_G0025681	Adh6a (MGP_CAROLIEiJ_G0025680)	Adh1 (MGP_CAROLIEiJ_G0025679)	Adh7 (MGP_CAROLIEiJ_G0025678)	MGP_CAROLIEiJ_G0025677	Trmt10a (MGP_CAROLIEiJ_G0025676)	Mttp (MGP_CAROLIEiJ_G0025675)	1110002E22Rik (MGP_CAROLIEiJ_G0025674)	MGP_CAROLIEiJ_G0025673	Dapp1 (MGP_CAROLIEiJ_G0025672)
Shrew mouse	MODERN SPECIES	17	Sh3glb1 (MGP_PahariEiJ_G0027153)	MGP_PahariEiJ_G0027152	Hs2st1 (MGP_PahariEiJ_G0027151)	Lmo4 (MGP_PahariEiJ_G0027150)	Pkn2 (MGP_PahariEiJ_G0027149)	Gtf2b (MGP_PahariEiJ_G0027148)	Kyat3 (MGP_PahariEiJ_G0027147)	Gbp2 (MGP_PahariEiJ_G0027145)	Gbp2b (MGP_PahariEiJ_G0027144)	Gbp3 (MGP_PahariEiJ_G0027143)	Gbp7 (MGP_PahariEiJ_G0027142)	Gbp5 (MGP_PahariEiJ_G0027141)	Pdlim5 (MGP_PahariEiJ_G0027140)	Bmpr1b (MGP_PahariEiJ_G0027139)	Unc5c (MGP_PahariEiJ_G0027138)	Pdha2 (MGP_PahariEiJ_G0027137) ##22	MGP_PahariEiJ_G0027136	Rap1gds1 (MGP_PahariEiJ_G0027135)	Tspan5 (MGP_PahariEiJ_G0027134)	MGP_PahariEiJ_G0027133	Metap1 (MGP_PahariEiJ_G0027132)	Adh5 (MGP_PahariEiJ_G0027131)	Adh4 (MGP_PahariEiJ_G0027130)	Adh6a (MGP_PahariEiJ_G0027129)	Adh1 (MGP_PahariEiJ_G0027128)	Adh7 (MGP_PahariEiJ_G0027127)	MGP_PahariEiJ_G0027126	MGP_PahariEiJ_G0027125	Mttp (MGP_PahariEiJ_G0027124)	1110002E22Rik (MGP_PahariEiJ_G0027123)	MGP_PahariEiJ_G0027122
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1188											Upp1 (ENSNGAG00000000090)	Gm11992 (ENSNGAG00000000516)	Sun3 (ENSNGAG00000001418)	Hus1 (ENSNGAG00000004732)	Pkd1l1 (ENSNGAG00000005394)	ENSNGAG00000013633 ##22	Tns3 (ENSNGAG00000011659)	ENSNGAG00000020291	Igfbp3 (ENSNGAG00000001324)	Igfbp1 (ENSNGAG00000004452)	Ccdc201 (ENSNGAG00000016158)	Adcy1 (ENSNGAG00000016931)	ENSNGAG00000019239	Spag6l (ENSNGAG00000000639)	Igll1 (ENSNGAG00000012165)	ENSNGAG00000012863	Top3b (ENSNGAG00000013394)	Ppm1f (ENSNGAG00000014819)	Mapk1 (ENSNGAG00000017072)	Ypel1 (ENSNGAG00000011268)	Ppil2 (ENSNGAG00000013353)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1892													Pdlim5 (ENSNGAG00000010868)	Bmpr1b (ENSNGAG00000010895)	Unc5c (ENSNGAG00000013650)	ENSNGAG00000020993 ##22	Rap1gds1 (ENSNGAG00000007074)	Tspan5 (ENSNGAG00000012715)	ENSNGAG00000018806	Metap1 (ENSNGAG00000012208)	Adh5 (ENSNGAG00000007953)	Adh4 (ENSNGAG00000012271)	ENSNGAG00000020225	Adh6a (ENSNGAG00000013297)	Adh1 (ENSNGAG00000020406)	4930579F01Rik (ENSNGAG00000010035)	Trmt10a (ENSNGAG00000020021)	Mttp (ENSNGAG00000013317)	Dapp1 (ENSNGAG00000020380)	ENSNGAG00000018738	Dnajb14 (ENSNGAG00000020717)
Kangaroo rat	MODERN SPECIES	441	Herc3 (ENSDORG00000003569)	Fam13a (ENSDORG00000003574)	Tigd2 (ENSDORG00000025654)	ENSDORG00000002588	Snca (ENSDORG00000009317)	Mmrn1 (ENSDORG00000006592)	ENSDORG00000027149	Grid2 (ENSDORG00000011710)	Atoh1 (ENSDORG00000028007)	Smarcad1 (ENSDORG00000012331)	Hpgds (ENSDORG00000027463)	ENSDORG00000003185	ENSDORG00000026753	Bmpr1b (ENSDORG00000000215)	Unc5c (ENSDORG00000000217)	ENSDORG00000025202 ##22	ENSDORG00000000260	Rap1gds1 (ENSDORG00000016143)	Tspan5 (ENSDORG00000005084)	Eif4e (ENSDORG00000002901)	Metap1 (ENSDORG00000009104)	Adh5 (ENSDORG00000009107)	Adh4 (ENSDORG00000012881)	ENSDORG00000023427	ENSDORG00000028157
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Hystricomorpha	ANCESTRAL SPECIES	65	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT01030000235745	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000048185	ENSHGLG00000037793	GRID2 (ENSHGLG00000004059)	ENSHGLG00000020623	ENSHGLG00000033791	ENSHGLG00000037196	ENSHGLG00000005070	HPGDS (ENSHGLG00000039097)	ENSHGLG00000048563	ENSHGLG00000032448	ENSHGLG00000006128	ENSHGLG00000033607	ENSHGLG00000035615	BMPR1B (ENSHGLG00000008496)	ENSHGLG00000015705	ENSHGLG00000013357 ##22	ENSHGLG00000008980	ENSHGLG00000045804	ENSHGLG00000013760	ENSHGLG00000049854	ENSHGLG00000005415	ANXA3 (ENSHGLG00000005040)	ENSHGLG00000004648	ENSHGLG00000004308	NAA11 (ENSHGLG00000004240)	ENSHGLG00000040025	GK2 (ENSHGLG00000004055)	ENSHGLG00000040695	ENSHGLG00000005029	ENSHGLG00000037275	ANTXR2 (ENSHGLG00000003724)
Sciuridae	ANCESTRAL SPECIES	43	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00940000162708	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645
Eurasian red squirrel	MODERN SPECIES	18	SNCA (ENSSVLG00005013695)	MMRN1 (ENSSVLG00005013447)	ENSSVLG00005013377	ENSSVLG00005013336	CCSER1 (ENSSVLG00005013176)	GRID2 (ENSSVLG00005013012)	ATOH1 (ENSSVLG00005012969)	ENSSVLG00005012950	ENSSVLG00005012922	SMARCAD1 (ENSSVLG00005012842)	HPGDS (ENSSVLG00005012759)	PDLIM5 (ENSSVLG00005012519)	ENSSVLG00005012440	BMPR1B (ENSSVLG00005012210)	UNC5C (ENSSVLG00005011917)	PDHA2 (ENSSVLG00005011855) ##22	ENSSVLG00005011783	ENSSVLG00005011739	STPG2 (ENSSVLG00005011406)	RAP1GDS1 (ENSSVLG00005010759)	TSPAN5 (ENSSVLG00005010633)	ENSSVLG00005010593	ENSSVLG00005010514	ENSSVLG00005010489	METAP1 (ENSSVLG00005010452)	ADH5 (ENSSVLG00005010428)	ENSSVLG00005010395	ADH4 (ENSSVLG00005010268)	ENSSVLG00005010217	ENSSVLG00005009788	ENSSVLG00005009691
Atlantogenata	ANCESTRAL SPECIES	57														ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000163645	ENSGT00940000162845	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274
Afrotheria	ANCESTRAL SPECIES	67														ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000163645	ENSGT00940000162845.y	ENSGT00940000155234.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000157887
Afrotheria_a	ANCESTRAL SPECIES	62														ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00530000063174.a.j ##22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000163645	ENSGT00940000155234.b.a	ENSGT00940000162845.y	ENSGT00940000155234.b.b	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00910000144274	ENSGT00390000013159
Elephant	MODERN SPECIES	95														BMPR1B (ENSLAFG00000010753)	UNC5C (ENSLAFG00000010761)	PDHA2 (ENSLAFG00000008485) ##22	STPG2 (ENSLAFG00000012449)	RAP1GDS1 (ENSLAFG00000003961)	TSPAN5 (ENSLAFG00000003964)	ENSLAFG00000030079	EIF4E (ENSLAFG00000002450)	METAP1 (ENSLAFG00000015280)	ADH5 (ENSLAFG00000001005)	ADH6 (ENSLAFG00000013178)	ENSLAFG00000030511	ENSLAFG00000025758	ENSLAFG00000029937	ENSLAFG00000008679	C4orf17 (ENSLAFG00000007541)	TRMT10A (ENSLAFG00000029276)	MTTP (ENSLAFG00000017868)
Xenarthra	ANCESTRAL SPECIES																	ENSGT00530000063174.a.j ##22
Sloth	MODERN SPECIES	8958																PDHA2 (ENSCHOG00000005414) ##22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	23																ENSGT00530000063174.a.g #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00530000063503.a.a	ENSGT00530000063558.A	ENSGT00510000047809	ENSGT00940000159169	ENSGT00940000155530	ENSGT00390000007797	ENSGT00940000157095	ENSGT00550000074838	ENSGT00390000000191	ENSGT00390000004660.C.b	ENSGT00390000006574	ENSGT00950000182852.A.a.b	ENSGT00940000158272	ENSGT00940000158147	ENSGT00940000161415	ENSGT00530000063174.a.g #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a.f	ENSGT00390000005330
Diprotodontia	ANCESTRAL SPECIES	23	ENSGT00530000063503.a.a	ENSGT00530000063558.A	ENSGT00510000047809	ENSGT00940000159169	ENSGT00940000155530	ENSGT00390000007797	ENSGT00940000157095	ENSGT00550000074838	ENSGT00390000000191	ENSGT00390000004660.C.b	ENSGT00390000006574	ENSGT00950000182852.A.a.b	ENSGT00940000158272	ENSGT00940000158147	ENSGT00940000161415	ENSGT00530000063174.a.g #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a.f	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b
Diprotodontia_a	ANCESTRAL SPECIES	24	ENSGT00530000063503.a.a	ENSGT00530000063558.A	ENSGT00510000047809	ENSGT00940000159169	ENSGT00940000155530	ENSGT00390000007797	ENSGT00940000157095	ENSGT00550000074838	ENSGT00390000000191	ENSGT00390000004660.C.b	ENSGT00390000006574	ENSGT00950000182852.A.a.b	ENSGT00940000158272	ENSGT00940000158147	ENSGT00940000161415	ENSGT00530000063174.a.g #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a.f	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b
Common wonbat	MODERN SPECIES	56	IMPG2 (ENSVURG00010013164)	ENSVURG00010013009	TFG (ENSVURG00010012983)	ADGRG7 (ENSVURG00010012960)	TMEM45A (ENSVURG00010012942)	ENSVURG00010012941	TOMM70 (ENSVURG00010012184)	NIT2 (ENSVURG00010012148)	TBC1D23 (ENSVURG00010012116)	ENSVURG00010012099	CMSS1 (ENSVURG00010012075)	FILIP1L (ENSVURG00010012064)	COL8A1 (ENSVURG00010012056)	DCBLD2 (ENSVURG00010012042)	ST3GAL6 (ENSVURG00010012019)	ENSVURG00010011973 #22	ENSVURG00010011964	MAP3K15 (ENSVURG00010011944) #23	BCLAF3 (ENSVURG00010011888)	ENSVURG00010011864 #26	EIF1AX (ENSVURG00010011856) #28	RPS6KA3 (ENSVURG00010011816) #29	CNKSR2 (ENSVURG00010011791) #32	ENSVURG00010011764	SMPX (ENSVURG00010011755) #33	MBTPS2 (ENSVURG00010011746) #34	SMS (ENSVURG00010011730) #36	PHEX (ENSVURG00010011707) #37	PTCHD1 (ENSVURG00010011688)	ENSVURG00010011668	ACOT9 (ENSVURG00010011656)
koala	MODERN SPECIES	36															ENSPCIG00000032452	ENSPCIG00000009157 #22	MAP3K15 (ENSPCIG00000009152) #23	SH3KBP1 (ENSPCIG00000029212) #24	BCLAF3 (ENSPCIG00000007517)	MAP7D2 (ENSPCIG00000007534) #26	EIF1AX (ENSPCIG00000007615) #28	RPS6KA3 (ENSPCIG00000007618) #29	CNKSR2 (ENSPCIG00000011723) #32	ENSPCIG00000011721 #33	MBTPS2 (ENSPCIG00000011718) #34	SMS (ENSPCIG00000033142) #36	PHEX (ENSPCIG00000011706) #37	ENSPCIG00000011702	PTCHD1 (ENSPCIG00000008175)	ENSPCIG00000008170	ACOT9 (ENSPCIG00000008098)
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000032206	ENSSHAG00000031464	TMEM45A (ENSSHAG00000004347)	ENSSHAG00000006175	TOMM70 (ENSSHAG00000007111)	NIT2 (ENSSHAG00000007371)	TBC1D23 (ENSSHAG00000007828)	ENSSHAG00000008996	CMSS1 (ENSSHAG00000009321)	ENSSHAG00000030984	FILIP1L (ENSSHAG00000011515)	COL8A1 (ENSSHAG00000012024)	ENSSHAG00000022061	ENSSHAG00000010926	ENSSHAG00000024653	ENSSHAG00000015375 #22	MAP3K15 (ENSSHAG00000014925) #23	SH3KBP1 (ENSSHAG00000013892) #24	BCLAF3 (ENSSHAG00000012448)	EIF1AX (ENSSHAG00000010995) #28	RPS6KA3 (ENSSHAG00000010273) #29	ENSSHAG00000024113	CNKSR2 (ENSSHAG00000013024) #32	KLHL34 (ENSSHAG00000025108)	SMPX (ENSSHAG00000023724) #33	MBTPS2 (ENSSHAG00000012034) #34	SMS (ENSSHAG00000011004) #36	PHEX (ENSSHAG00000008915) #37	PTCHD1 (ENSSHAG00000012338)	PRDX4 (ENSSHAG00000029195)	ACOT9 (ENSSHAG00000010202)
Opossum	MODERN SPECIES	3	NXPE3 (ENSMODG00000001891)	NFKBIZ (ENSMODG00000001888)	ENSMODG00000025182	ZPLD1 (ENSMODG00000001877)	ENSMODG00000042278	ENSMODG00000037530	ENSMODG00000039570	ENSMODG00000043822	ALCAM (ENSMODG00000001829)	ENSMODG00000043098	CBLB (ENSMODG00000001816)	ENSMODG00000041564	CCDC54 (ENSMODG00000025189)	BBX (ENSMODG00000001748)	ENSMODG00000028099	ENSMODG00000009055 #22	ENSMODG00000009020 #23	ENSMODG00000008531 #24	BCLAF3 (ENSMODG00000008177)	MAP7D2 (ENSMODG00000008158) #26	ENSMODG00000008113	ENSMODG00000027820 #28	RPS6KA3 (ENSMODG00000008086) #29	ENSMODG00000051481	ENSMODG00000043235	CNKSR2 (ENSMODG00000008001) #32	ENSMODG00000007934 #33	MBTPS2 (ENSMODG00000007926) #34	ENSMODG00000007897 #36	PHEX (ENSMODG00000007861) #37	ENSMODG00000050590
Marsupialia	ANCESTRAL SPECIES																	ENSGT00530000063174.a.h #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00530000063174.a.h #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00530000063174.a.h #22
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000154967.b	ENSGT00940000154386.ob	ENSGT00940000158746	ENSGT00940000155117.e	ENSGT00940000155117.f.a	ENSGT00390000001114	ENSGT00940000162420	ENSGT00390000006200	ENSGT00940000155195	ENSGT00940000157937	ENSGT00940000158520	ENSGT00940000157316	ENSGT00940000161004	ENSGT00940000161034	ENSGT00940000156099	ENSGT00530000063174.a.h #22	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499	ENSGT00940000154149.b.a	ENSGT00940000159391	ENSGT00390000014594	ENSGT00390000014781
koala	MODERN SPECIES	16	ENSPCIG00000034151	B3GALT2 (ENSPCIG00000028629)	CDC73 (ENSPCIG00000028627)	GLRX2 (ENSPCIG00000028630)	RO60 (ENSPCIG00000028632)	UCHL5 (ENSPCIG00000028635)	RGS2 (ENSPCIG00000028637)	RGS13 (ENSPCIG00000028638)	RGS1 (ENSPCIG00000028640)	RGS21 (ENSPCIG00000028642)	RGS18 (ENSPCIG00000028645)	ENSPCIG00000009505	BRINP3 (ENSPCIG00000011884)	ENSPCIG00000030217	ENSPCIG00000005019	ENSPCIG00000014129 #22	ENSPCIG00000029214	ENSPCIG00000004330	ENSPCIG00000021168	ENSPCIG00000002441	PLA2G4A (ENSPCIG00000002412)	PTGS2 (ENSPCIG00000002400)	PDC (ENSPCIG00000008954)	ODR4 (ENSPCIG00000008957)	TPR (ENSPCIG00000009067)	ENSPCIG00000034554	ENSPCIG00000035517	HMCN1 (ENSPCIG00000000542)	IVNS1ABP (ENSPCIG00000002510)	SWT1 (ENSPCIG00000002443)	TRMT1L (ENSPCIG00000002409)
Common wonbat	MODERN SPECIES	1114	CDC73 (ENSVURG00010009900)	B3GALT2 (ENSVURG00010009911)	GLRX2 (ENSVURG00010009918)	RO60 (ENSVURG00010009922)	UCHL5 (ENSVURG00010009933)	RGS2 (ENSVURG00010009951)	RGS13 (ENSVURG00010009957)	RGS1 (ENSVURG00010009970)	RGS21 (ENSVURG00010009982)	RGS18 (ENSVURG00010009989)	ENSVURG00010009999	ENSVURG00010010006	BRINP3 (ENSVURG00010010014)	ENSVURG00010010022	ENSVURG00010010029	ENSVURG00010010036 #22
Wallaby	MODERN SPECIES	3736																ENSMEUG00000015516 #22
Tasmanian devil	MODERN SPECIES	3	B3GALT2 (ENSSHAG00000026757)	CDC73 (ENSSHAG00000013464)	GLRX2 (ENSSHAG00000031431)	RO60 (ENSSHAG00000027682)	UCHL5 (ENSSHAG00000030758)	RGS2 (ENSSHAG00000021123)	ENSSHAG00000023026	RGS1 (ENSSHAG00000025712)	RGS21 (ENSSHAG00000022729)	ENSSHAG00000029586	RGS18 (ENSSHAG00000006527)	ENSSHAG00000027804	BRINP3 (ENSSHAG00000007307)	ENSSHAG00000031269	ENSSHAG00000030508	ENSSHAG00000005427 #22	PLA2G4A (ENSSHAG00000016618)	PTGS2 (ENSSHAG00000016171)	PDC (ENSSHAG00000015671)	ODR4 (ENSSHAG00000015497)	TPR (ENSSHAG00000015305)	ENSSHAG00000015244	HMCN1 (ENSSHAG00000014526)	IVNS1ABP (ENSSHAG00000010210)	SWT1 (ENSSHAG00000009241)	TRMT1L (ENSSHAG00000008812)	RNF2 (ENSSHAG00000008595)	NIBAN1 (ENSSHAG00000005345)	EDEM3 (ENSSHAG00000003278)	ENSSHAG00000016590	TSEN15 (ENSSHAG00000025836)
Platypus	MODERN SPECIES	6	STS (ENSOANG00000050575)	PUDP (ENSOANG00000004048)	ENSOANG00000004047	PRKX (ENSOANG00000004046)	ENSOANG00000004044	ARSF (ENSOANG00000004043)	ENSOANG00000004042	ENSOANG00000004040	ARSD (ENSOANG00000004038)	CDKL5 (ENSOANG00000004037) #16	RS1 (ENSOANG00000005828) #18	PPEF1 (ENSOANG00000004036) #19	ENSOANG00000038719	PHKA2 (ENSOANG00000004031) #20	ADGRG2 (ENSOANG00000004030) #21	ENSOANG00000004029 #22	MAP3K15 (ENSOANG00000004027) #23	SH3KBP1 (ENSOANG00000039084) #24	BCLAF3 (ENSOANG00000004022)	MAP7D2 (ENSOANG00000004016) #26	EIF1AX (ENSOANG00000048193) #28	RPS6KA3 (ENSOANG00000010658) #29	CNKSR2 (ENSOANG00000010656) #32	SMPX (ENSOANG00000038957) #33	MBTPS2 (ENSOANG00000044594) #34	SMS (ENSOANG00000010654) #36	PHEX (ENSOANG00000010653) #37	PTCHD1 (ENSOANG00000010652)	ENSOANG00000012275	ACOT9 (ENSOANG00000012276)	SAT1 (ENSOANG00000011507)
Sauria	ANCESTRAL SPECIES	2	ENSGT00530000064238 #8	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Archelosauria	ANCESTRAL SPECIES		ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Archosauria	ANCESTRAL SPECIES	2	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Aves	ANCESTRAL SPECIES		ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Neognathae	ANCESTRAL SPECIES	1	ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Neognathae_b	ANCESTRAL SPECIES		ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT01100000263512.b.b.a	ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT01100000263512.b.b.a	ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00970000193372.a.a	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Common canary	MODERN SPECIES	11	GRPR (ENSSCAG00000013590)	CTPS2 (ENSSCAG00000013595) #7	ENSSCAG00000013601	SYAP1 (ENSSCAG00000013603) #9	TXLNG (ENSSCAG00000013606) #10	RBBP7 (ENSSCAG00000013609) #11	REPS2 (ENSSCAG00000013615) #12	NHS (ENSSCAG00000013628) #13	ENSSCAG00000013632 #15	SCML2 (ENSSCAG00000013642)	CDKL5 (ENSSCAG00000013673) #16	ENSSCAG00000013821	PPEF1 (ENSSCAG00000013826) #19	PHKA2 (ENSSCAG00000013844) #20	ADGRG2 (ENSSCAG00000013895) #21	ENSSCAG00000013917 #22	MAP3K15 (ENSSCAG00000013989) #23	SH3KBP1 (ENSSCAG00000014257) #24	BCLAF3 (ENSSCAG00000014318)	MAP7D2 (ENSSCAG00000014326) #26	ENSSCAG00000014338 #28	RPS6KA3 (ENSSCAG00000014654) #29	CNKSR2 (ENSSCAG00000015514) #32	KLHL34 (ENSSCAG00000015632)	SMPX (ENSSCAG00000015635) #33	MBTPS2 (ENSSCAG00000015638) #34	SMS (ENSSCAG00000015640) #36	PHEX (ENSSCAG00000015644) #37	PTCHD1 (ENSSCAG00000015647)	PRDX4 (ENSSCAG00000015650)	ACOT9 (ENSSCAG00000015654)
Zebra finch	MODERN SPECIES		AP1S2 (ENSTGUG00000007944)	GRPR (ENSTGUG00000007931)	CTPS2 (ENSTGUG00000007883) #7	SYAP1 (ENSTGUG00000007873) #9	TXLNG (ENSTGUG00000007846) #10	RBBP7 (ENSTGUG00000007826) #11	REPS2 (ENSTGUG00000007806) #12	NHS (ENSTGUG00000007798) #13	ENSTGUG00000007795 #15	SCML2 (ENSTGUG00000007781)	CDKL5 (ENSTGUG00000007769) #16	RS1 (ENSTGUG00000007765) #18	PPEF1 (ENSTGUG00000007736) #19	PHKA2 (ENSTGUG00000007695) #20	ADGRG2 (ENSTGUG00000007677) #21	ENSTGUG00000007653 #22	MAP3K15 (ENSTGUG00000007599) #23	SH3KBP1 (ENSTGUG00000007550) #24	BCLAF3 (ENSTGUG00000007538)	MAP7D2 (ENSTGUG00000007527) #26	ENSTGUG00000007524 #28	RPS6KA3 (ENSTGUG00000007471) #29	CNKSR2 (ENSTGUG00000007450) #32	KLHL34 (ENSTGUG00000007449)	SMPX (ENSTGUG00000020200) #33	MBTPS2 (ENSTGUG00000007431) #34	SMS (ENSTGUG00000007411) #36	PHEX (ENSTGUG00000007352) #37	ENSTGUG00000029682	PTCHD1 (ENSTGUG00000021804)	PRDX4 (ENSTGUG00000007332)
Medium ground finch	MODERN SPECIES	106	GRPR (ENSGFOG00000013539)	ENSGFOG00000013537	CTPS2 (ENSGFOG00000013536) #7	SYAP1 (ENSGFOG00000013528) #9	TXLNG (ENSGFOG00000013522) #10	RBBP7 (ENSGFOG00000013519) #11	REPS2 (ENSGFOG00000013518) #12	NHS (ENSGFOG00000013516) #13	ENSGFOG00000013512 #15	SCML2 (ENSGFOG00000013508)	CDKL5 (ENSGFOG00000013485) #16	RS1 (ENSGFOG00000013477) #18	PPEF1 (ENSGFOG00000013473) #19	PHKA2 (ENSGFOG00000011321) #20	ADGRG2 (ENSGFOG00000011152) #21	ENSGFOG00000011142 #22	MAP3K15 (ENSGFOG00000010920) #23	SH3KBP1 (ENSGFOG00000010845) #24	BCLAF3 (ENSGFOG00000010815)	MAP7D2 (ENSGFOG00000010744) #26	EIF1AY (ENSGFOG00000010726) #28	RPS6KA3 (ENSGFOG00000010646) #29
Flycatcher	MODERN SPECIES		GRPR (ENSFALG00000004365)	ENSFALG00000025554	CTPS2 (ENSFALG00000004352) #7	SYAP1 (ENSFALG00000004339) #9	TXLNG (ENSFALG00000004337) #10	RBBP7 (ENSFALG00000004332) #11	REPS2 (ENSFALG00000004325) #12	NHS (ENSFALG00000004320) #13	ENSFALG00000026988 #15	SCML2 (ENSFALG00000004312)	CDKL5 (ENSFALG00000004310) #16	ENSFALG00000004306	PPEF1 (ENSFALG00000004294) #19	PHKA2 (ENSFALG00000004289) #20	ADGRG2 (ENSFALG00000004273) #21	ENSFALG00000004262 #22	MAP3K15 (ENSFALG00000004253) #23	SH3KBP1 (ENSFALG00000004232) #24	BCLAF3 (ENSFALG00000004216)	ENSFALG00000025070 #26	ENSFALG00000026313 #26	ENSFALG00000026702	EIF1AX (ENSFALG00000023239) #28	RPS6KA3 (ENSFALG00000004203) #29	CNKSR2 (ENSFALG00000004197) #32	KLHL34 (ENSFALG00000004192)	SMPX (ENSFALG00000004189) #33	SMS (ENSFALG00000004178) #36	PHEX (ENSFALG00000004174) #37	PTCHD1 (ENSFALG00000004172)	PRDX4 (ENSFALG00000026461)
Great tit	MODERN SPECIES		SYAP1 (ENSPMJG00000011481) #9	ENSPMJG00000011480	TXLNG (ENSPMJG00000011479) #10	RBBP7 (ENSPMJG00000011322) #11	REPS2 (ENSPMJG00000011320) #12	NHS (ENSPMJG00000011314) #13	ENSPMJG00000011313	ENSPMJG00000011312 #15	RAI2 (ENSPMJG00000011309) #14	SCML2 (ENSPMJG00000011308)	CDKL5 (ENSPMJG00000011307) #16	ENSPMJG00000011306	PPEF1 (ENSPMJG00000011305) #19	PHKA2 (ENSPMJG00000011304) #20	ADGRG2 (ENSPMJG00000011302) #21	ENSPMJG00000011299 #22	MAP3K15 (ENSPMJG00000011298) #23	SH3KBP1 (ENSPMJG00000011295) #24	BCLAF3 (ENSPMJG00000011294)	MAP7D2 (ENSPMJG00000011293) #26	EIF1AX (ENSPMJG00000011291) #28	RPS6KA3 (ENSPMJG00000011290) #29	CNKSR2 (ENSPMJG00000011285) #32	ENSPMJG00000011284	SMPX (ENSPMJG00000011283) #33	MBTPS2 (ENSPMJG00000011282) #34	SMS (ENSPMJG00000011240) #36	PHEX (ENSPMJG00000011239) #37	ENSPMJG00000011235	ENSPMJG00000011234	ENSPMJG00000011233
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00970000193372.a.a	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	11	GRPR (ENSSHBG00005019105)	CTPS2 (ENSSHBG00005019102) #7	SYAP1 (ENSSHBG00005019100) #9	TXLNG (ENSSHBG00005019098) #10	RBBP7 (ENSSHBG00005019094) #11	REPS2 (ENSSHBG00005019091) #12	NHS (ENSSHBG00005019088) #13	ENSSHBG00005019087 #15	RAI2 (ENSSHBG00005019085) #14	SCML2 (ENSSHBG00005019081)	CDKL5 (ENSSHBG00005019079) #16	ENSSHBG00005019076	ENSSHBG00005019074 #19	PHKA2 (ENSSHBG00005019048) #20	ADGRG2 (ENSSHBG00005019028) #21	ENSSHBG00005019023 #22	ENSSHBG00005018975 #22	ENSSHBG00005018967 #23	ENSSHBG00005018962 #23	SH3KBP1 (ENSSHBG00005018133) #24	BCLAF3 (ENSSHBG00005018091)	MAP7D2 (ENSSHBG00005018085) #26	EIF1AY (ENSSHBG00005018079) #28	RPS6KA3 (ENSSHBG00005007492) #29	CNKSR2 (ENSSHBG00005006684) #32	KLHL34 (ENSSHBG00005006628)	SMPX (ENSSHBG00005006614) #33	MBTPS2 (ENSSHBG00005006593) #34	SMS (ENSSHBG00005006564) #36	PHEX (ENSSHBG00005006528) #37	PTCHD1 (ENSSHBG00005006504)
Kakapo	MODERN SPECIES	11	CTPS2 (ENSSHBG00005019102) #7	SYAP1 (ENSSHBG00005019100) #9	TXLNG (ENSSHBG00005019098) #10	RBBP7 (ENSSHBG00005019094) #11	REPS2 (ENSSHBG00005019091) #12	NHS (ENSSHBG00005019088) #13	ENSSHBG00005019087 #15	RAI2 (ENSSHBG00005019085) #14	SCML2 (ENSSHBG00005019081)	CDKL5 (ENSSHBG00005019079) #16	ENSSHBG00005019076	ENSSHBG00005019074 #19	PHKA2 (ENSSHBG00005019048) #20	ADGRG2 (ENSSHBG00005019028) #21	ENSSHBG00005019023 #22	ENSSHBG00005018975 #22	ENSSHBG00005018967 #23	ENSSHBG00005018962 #23	SH3KBP1 (ENSSHBG00005018133) #24	BCLAF3 (ENSSHBG00005018091)	MAP7D2 (ENSSHBG00005018085) #26	EIF1AY (ENSSHBG00005018079) #28	RPS6KA3 (ENSSHBG00005007492) #29	CNKSR2 (ENSSHBG00005006684) #32	KLHL34 (ENSSHBG00005006628)	SMPX (ENSSHBG00005006614) #33	MBTPS2 (ENSSHBG00005006593) #34	SMS (ENSSHBG00005006564) #36	PHEX (ENSSHBG00005006528) #37	PTCHD1 (ENSSHBG00005006504)	PRDX4 (ENSSHBG00005006485)
Golden eagle	MODERN SPECIES	23									RAI2 (ENSACCG00020004428) #14	SCML2 (ENSACCG00020004422)	CDKL5 (ENSACCG00020004398) #16	ENSACCG00020004392	PPEF1 (ENSACCG00020004379) #19	PHKA2 (ENSACCG00020004342) #20	ADGRG2 (ENSACCG00020004309) #21	ENSACCG00020004280 #22	MAP3K15 (ENSACCG00020004243) #23	SH3KBP1 (ENSACCG00020004130) #24	BCLAF3 (ENSACCG00020003922)	MAP7D2 (ENSACCG00020003899) #26	EIF1AY (ENSACCG00020003868) #28	ENSACCG00020003833 #29	CNKSR2 (ENSACCG00020003793) #32	KLHL34 (ENSACCG00020003780)	SMPX (ENSACCG00020003772) #33	MBTPS2 (ENSACCG00020003760) #34	SMS (ENSACCG00020003730) #36	PHEX (ENSACCG00020003703) #37	ENSACCG00020003681	ENSACCG00020003664	ENSACCG00020003657
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Anatidae	ANCESTRAL SPECIES	58	ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28
Pink-footed goose	MODERN SPECIES	42	CTPS2 (ENSABRG00000010258) #7	SYAP1 (ENSABRG00000010245) #9	TXLNG (ENSABRG00000010232) #10	RBBP7 (ENSABRG00000010224) #11	REPS2 (ENSABRG00000010203) #12	NHS (ENSABRG00000010185) #13	ENSABRG00000010171 #15	SCML2 (ENSABRG00000010136)	CDKL5 (ENSABRG00000010091) #16	RS1 (ENSABRG00000010078) #18	ENSABRG00000010075 #19	PHKA2 (ENSABRG00000005409) #20	ADGRG2 (ENSABRG00000005170) #21	ENSABRG00000005155	ENSABRG00000005147	ENSABRG00000005131 #22	MAP3K15 (ENSABRG00000005057) #23	SH3KBP1 (ENSABRG00000003049) #24	BCLAF3 (ENSABRG00000002929)	MAP7D2 (ENSABRG00000002715) #26	EIF1AX (ENSABRG00000002642) #28
Duck	MODERN SPECIES		ENSAPLG00000020855	CTPS2 (ENSAPLG00000012743) #7	SYAP1 (ENSAPLG00000012524) #9	TXLNG (ENSAPLG00000012324) #10	RBBP7 (ENSAPLG00000011785) #11	REPS2 (ENSAPLG00000011221) #12	NHS (ENSAPLG00000011104) #13	ENSAPLG00000030010 #15	RAI2 (ENSAPLG00000026209) #14	SCML2 (ENSAPLG00000010725)	CDKL5 (ENSAPLG00000010656) #16	RS1 (ENSAPLG00000010522) #18	PPEF1 (ENSAPLG00000010050) #19	PHKA2 (ENSAPLG00000009522) #20	ADGRG2 (ENSAPLG00000008909) #21	ENSAPLG00000008450 #22	MAP3K15 (ENSAPLG00000007410) #23	SH3KBP1 (ENSAPLG00000007164) #24	BCLAF3 (ENSAPLG00000005332)	MAP7D2 (ENSAPLG00000005077) #26	EIF1AX (ENSAPLG00000029362) #28	FAM3B (ENSAPLG00000015920)	MX1 (ENSAPLG00000015976)	TMPRSS2 (ENSAPLG00000016160)	RIPK4 (ENSAPLG00000016253)	ENSAPLG00000001186	PRDM15 (ENSAPLG00000001239)	C2CD2 (ENSAPLG00000001983)	ZBTB21 (ENSAPLG00000000767)	ENSAPLG00000002409	ABCG1 (ENSAPLG00000008841)
Phasianidae	ANCESTRAL SPECIES		ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00960000189398	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Chicken	MODERN SPECIES		CTPS2 (ENSGALG00010001691) #7	SYAP1 (ENSGALG00010001678) #9	TXLNG (ENSGALG00010002402) #10	RBBP7 (ENSGALG00010002400) #11	ENSGALG00010002394	REPS2 (ENSGALG00010002391) #12	NHS (ENSGALG00010002379) #13	ENSGALG00010002370 #15	RAI2 (ENSGALG00010002365) #14	SCML2 (ENSGALG00010002345)	CDKL5 (ENSGALG00010002161) #16	RS1 (ENSGALG00010003040) #18	PPEF1 (ENSGALG00010003030) #19	PHKA2 (ENSGALG00010003002) #20	ADGRG2 (ENSGALG00010002957) #21	PDHA2 (ENSGALG00010002929) #22	MAP3K15 (ENSGALG00010002883) #23	ENSGALG00010002869	SH3KBP1 (ENSGALG00010002809) #24	CXorf23 (ENSGALG00010002790)	MAP7D2 (ENSGALG00010002765) #26	EIF1AX (ENSGALG00010002653) #28	RPS6KA3 (ENSGALG00010002592) #29	CNKSR2 (ENSGALG00010001918) #32	KLHL34 (ENSGALG00010001890)	SMPX (ENSGALG00010001885) #33	MBTPS2 (ENSGALG00010003275) #34	SMS (ENSGALG00010003268) #36	PHEX (ENSGALG00010003252) #37	ENSGALG00010003247	PRDX4 (ENSGALG00010003214)
Turkey	MODERN SPECIES		ENSMGAG00000020081 #37	ENSMGAG00000014656 #37	ENSMGAG00000014657 #36	ENSMGAG00000014659 #33	ENSMGAG00000014661	ENSMGAG00000014662 #32	ENSMGAG00000020891	ENSMGAG00000020398 #32	ENSMGAG00000014663 #29	ENSMGAG00000014664 #28	ENSMGAG00000014665 #26	ENSMGAG00000014666	ENSMGAG00000018972	ENSMGAG00000014667 #24	ENSMGAG00000014668 #23	ENSMGAG00000014669 #22	ENSMGAG00000021924 #23	ADGRG2 (ENSMGAG00000014670) #21	ENSMGAG00000016590 #20	ENSMGAG00000014673	ENSMGAG00000014672 #19	ENSMGAG00000014671 #20	ENSMGAG00000014674 #16	ENSMGAG00000014675	ENSMGAG00000021746	ENSMGAG00000014681 #13	ENSMGAG00000018381	ENSMGAG00000014682 #12	ENSMGAG00000014683 #11	ENSMGAG00000014684 #10	ENSMGAG00000022701 #10
Japanese quail	MODERN SPECIES		GRPR (ENSCJPG00005018115)	CTPS2 (ENSCJPG00005017894) #7	SYAP1 (ENSCJPG00005017893) #9	TXLNG (ENSCJPG00005017892) #10	ENSCJPG00005017891 #11	REPS2 (ENSCJPG00005017890) #12	NHS (ENSCJPG00005017889) #13	ENSCJPG00005017888 #15	RAI2 (ENSCJPG00005017887) #14	SCML2 (ENSCJPG00005017884)	CDKL5 (ENSCJPG00005017882) #16	RS1 (ENSCJPG00005017881) #18	PPEF1 (ENSCJPG00005017880) #19	PHKA2 (ENSCJPG00005017878) #20	ADGRG2 (ENSCJPG00005017848) #21	ENSCJPG00005017845 #22	MAP3K15 (ENSCJPG00005017843) #23	SH3KBP1 (ENSCJPG00005017358) #24	BCLAF3 (ENSCJPG00005017348)	ARX (ENSCJPG00005017313)	POLA1 (ENSCJPG00005017303)	PCYT1B (ENSCJPG00005017302)	PDK3 (ENSCJPG00005017269)	ENSCJPG00005017268	ENSCJPG00005017267	ENSCJPG00005017265	KLHL15 (ENSCJPG00005017264)	APOO (ENSCJPG00005017263)	SAT1 (ENSCJPG00005017262)	ACOT9 (ENSCJPG00005017261)	PRDX4 (ENSCJPG00005017260)
African ostrich	MODERN SPECIES	411	GRPR (ENSSCUG00000007599)	CTPS2 (ENSSCUG00000007604) #7	SYAP1 (ENSSCUG00000007615) #9	TXLNG (ENSSCUG00000007623) #10	RBBP7 (ENSSCUG00000007625) #11	REPS2 (ENSSCUG00000007629) #12	NHS (ENSSCUG00000007632) #13	ENSSCUG00000007636 #15	ENSSCUG00000007641	SCML2 (ENSSCUG00000007645)	CDKL5 (ENSSCUG00000007652) #16	ENSSCUG00000007656	PPEF1 (ENSSCUG00000007662) #19	PHKA2 (ENSSCUG00000007679) #20	ADGRG2 (ENSSCUG00000007691) #21	ENSSCUG00000007704 #22	MAP3K15 (ENSSCUG00000007712) #23	SH3KBP1 (ENSSCUG00000007720) #24	BCLAF3 (ENSSCUG00000007724)	MAP7D2 (ENSSCUG00000007734) #26	EIF1AY (ENSSCUG00000007738) #28	RPS6KA3 (ENSSCUG00000007740) #29
Australian saltwater crocodile	MODERN SPECIES	27	CTPS2 (ENSCPRG00005005530) #7	SYAP1 (ENSCPRG00005005518) #9	TXLNG (ENSCPRG00005005436) #10	RBBP7 (ENSCPRG00005005235) #11	REPS2 (ENSCPRG00005005208) #12	NHS (ENSCPRG00005005178) #13	ENSCPRG00005005174 #15	RAI2 (ENSCPRG00005005138) #14	SCML2 (ENSCPRG00005005129)	ENSCPRG00005005124	CDKL5 (ENSCPRG00005005093) #16	ENSCPRG00005005070	PPEF1 (ENSCPRG00005005055) #19	PHKA2 (ENSCPRG00005005007) #20	ADGRG2 (ENSCPRG00005004970) #21	ENSCPRG00005004929 #22	MAP3K15 (ENSCPRG00005004759) #23	SH3KBP1 (ENSCPRG00005004278) #24	BCLAF3 (ENSCPRG00005004205)	MAP7D2 (ENSCPRG00005004181) #26	EIF1AY (ENSCPRG00005004137) #28	RPS6KA3 (ENSCPRG00005004126) #29	CNKSR2 (ENSCPRG00005004095) #32	KLHL34 (ENSCPRG00005004072)	SMPX (ENSCPRG00005004068) #33	MBTPS2 (ENSCPRG00005004052) #34	SMS (ENSCPRG00005004044) #36	PHEX (ENSCPRG00005003998) #37	ENSCPRG00005003970	ENSCPRG00005003968	PRDX4 (ENSCPRG00005003960)
Cryptodira	ANCESTRAL SPECIES		ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b.a	ENSGT00950000182941.b.b #26	ENSGT00390000008256.a #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Emydidae	ANCESTRAL SPECIES	28	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b.a	ENSGT00950000182941.b.b #26	ENSGT00390000008256.b #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	6	ENSTMTG00000008135	ENSTMTG00000008147 #7	ENSTMTG00000008186 #9	ENSTMTG00000008203 #10	ENSTMTG00000008218 #11	ENSTMTG00000008248 #12	ENSTMTG00000008268 #13	ENSTMTG00000008320 #15	ENSTMTG00000008340 #14	ENSTMTG00000008358	ENSTMTG00000008455 #16	ENSTMTG00000008487	ENSTMTG00000008539 #19	ENSTMTG00000008930 #20	ENSTMTG00000010552 #21	ENSTMTG00000010673 #22	ENSTMTG00000010871 #23	ENSTMTG00000012121 #24	ENSTMTG00000012334	ENSTMTG00000012414 #26	ENSTMTG00000012505 #28	ENSTMTG00000013119 #29	ENSTMTG00000020397 #32	ENSTMTG00000020818	ENSTMTG00000020839 #33	ENSTMTG00000020853 #34	ENSTMTG00000020859 #36	ENSTMTG00000020869 #37	ENSTMTG00000020902	ENSTMTG00000020909	ENSTMTG00000020913
Three-toed box turtle	MODERN SPECIES	5	ENSTMTG00000002749	ENSTMTG00000002754	ENSTMTG00000002757 #7	ENSTMTG00000002782 #9	ENSTMTG00000002824 #10	ENSTMTG00000002839 #11	ENSTMTG00000002850 #12	ENSTMTG00000002860 #13	ENSTMTG00000002881 #14	ENSTMTG00000002891	ENSTMTG00000002920 #16	ENSTMTG00000002935	ENSTMTG00000002941 #19	ENSTMTG00000003024 #20	ENSTMTG00000004327 #21	ENSTMTG00000004440 #22	ENSTMTG00000004603 #23	ENSTMTG00000004705 #24	ENSTMTG00000004814	ENSTMTG00000004847 #26	ENSTMTG00000005010 #28	ENSTMTG00000005717 #29	ENSTMTG00000016148 #32	ENSTMTG00000017830	ENSTMTG00000017855 #33	ENSTMTG00000017886 #34	ENSTMTG00000018067 #36	ENSTMTG00000018074 #37	ENSTMTG00000018114	ENSTMTG00000018119	ENSTMTG00000018125
painted turtle	MODERN SPECIES	736	ACOT9 (ENSCPBG00000006727)	SAT1 (ENSCPBG00000006749)	APOO (ENSCPBG00000006759)	ENSCPBG00000006769	KLHL15 (ENSCPBG00000006784)	ENSCPBG00000006795	ENSCPBG00000006809	ENSCPBG00000006822	SCML2 (ENSCPBG00000006826)	CDKL5 (ENSCPBG00000006856) #16	RS1 (ENSCPBG00000006888) #18	PPEF1 (ENSCPBG00000006896) #19	PHKA2 (ENSCPBG00000006946) #20	ADGRG2 (ENSCPBG00000007007) #21	ENSCPBG00000007039	ENSCPBG00000007047 #22	MAP3K15 (ENSCPBG00000007064) #23	SH3KBP1 (ENSCPBG00000007082) #24	BCLAF3 (ENSCPBG00000007103)	ENSCPBG00000007121 #26	ENSCPBG00000007124 #26	NHS (ENSCPBG00000007162) #13	ENSCPBG00000007197 #15
Testudinidae	ANCESTRAL SPECIES		ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b.a	ENSGT00950000182941.b.b #26	ENSGT00390000008256.b #28	ENSGT01030000235848	ENSGT00390000008256.a #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080
Abingdon island giant tortoise	MODERN SPECIES	585																ENSCABG00000001623 #22	MAP3K15 (ENSCABG00000001631) #23	SH3KBP1 (ENSCABG00000001638) #24	ENSCABG00000001643	MAP7D2 (ENSCABG00000001649) #26	EIF1AY (ENSCABG00000001672) #28	ENSCABG00000001679	ZFPM2 (ENSCABG00000001690)
Goode s thornscrub tortoise	MODERN SPECIES		GRPR (ENSGEVG00005000462)	CTPS2 (ENSGEVG00005000517) #7	SYAP1 (ENSGEVG00005000626) #9	TXLNG (ENSGEVG00005000647) #10	RBBP7 (ENSGEVG00005000675) #11	REPS2 (ENSGEVG00005000696) #12	NHS (ENSGEVG00005000729) #13	ENSGEVG00005000765 #15	RAI2 (ENSGEVG00005000801) #14	SCML2 (ENSGEVG00005000816)	CDKL5 (ENSGEVG00005000847) #16	RS1 (ENSGEVG00005000877) #18	PPEF1 (ENSGEVG00005000898) #19	PHKA2 (ENSGEVG00005001251) #20	ADGRG2 (ENSGEVG00005001856) #21	ENSGEVG00005001923 #22	ENSGEVG00005001952	MAP3K15 (ENSGEVG00005002034) #23	SH3KBP1 (ENSGEVG00005002292) #24	BCLAF3 (ENSGEVG00005002402)	MAP7D2 (ENSGEVG00005002440) #26	EIF1AY (ENSGEVG00005002462) #28	RPS6KA3 (ENSGEVG00005002477) #29	CNKSR2 (ENSGEVG00005002617) #32	KLHL34 (ENSGEVG00005002967)	SMPX (ENSGEVG00005002981) #33	MBTPS2 (ENSGEVG00005002992) #34	SMS (ENSGEVG00005003013) #36	PHEX (ENSGEVG00005003058) #37	ENSGEVG00005003120	ENSGEVG00005003126
Chinese turtle	MODERN SPECIES	313						ENSPSIG00000000360	REPS2 (ENSPSIG00000010677) #12	NHS (ENSPSIG00000011334) #13	RAI2 (ENSPSIG00000000365) #14	SCML2 (ENSPSIG00000012323)	CDKL5 (ENSPSIG00000012675) #16	RS1 (ENSPSIG00000012874) #18	PPEF1 (ENSPSIG00000013970) #19	PHKA2 (ENSPSIG00000016335) #20	ADGRG2 (ENSPSIG00000006325) #21	ENSPSIG00000006459 #22	MAP3K15 (ENSPSIG00000009589) #23
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000154748.C #11	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT01040000244463	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Episquamata	ANCESTRAL SPECIES	2	ENSGT01100000263512.b.b.a	ENSGT00530000064238 #8	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370.j #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Laterata	ANCESTRAL SPECIES		ENSGT01100000263512.b.b.a	ENSGT00530000064238 #8	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000163807 #15	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370.j #29	ENSGT00940000159370.i.b #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a
Common wall lizard	MODERN SPECIES	12	GRPR (ENSPMRG00000006974)	S100G (ENSPMRG00000006967) #8	SYAP1 (ENSPMRG00000006946) #9	CTPS2 (ENSPMRG00000006901) #7	TXLNG (ENSPMRG00000006878) #10	REPS2 (ENSPMRG00000006859) #12	NHS (ENSPMRG00000006823) #13	ENSPMRG00000006808 #15	RAI2 (ENSPMRG00000006796) #14	SCML2 (ENSPMRG00000006773)	CDKL5 (ENSPMRG00000006763) #16	ENSPMRG00000006751	PPEF1 (ENSPMRG00000006648) #19	PHKA2 (ENSPMRG00000002101) #20	ADGRG2 (ENSPMRG00000000590) #21	ENSPMRG00000000391 #22	MAP3K15 (ENSPMRG00000007498) #23	SH3KBP1 (ENSPMRG00000007049) #24	ENSPMRG00000006968	MAP7D2 (ENSPMRG00000006925) #26	ENSPMRG00000006905 #28	RPS6KA3 (ENSPMRG00000005784) #29	ENSPMRG00000005565	CNKSR2 (ENSPMRG00000004735) #32	KLHL34 (ENSPMRG00000004569)	SMPX (ENSPMRG00000004564) #33	MBTPS2 (ENSPMRG00000004556) #34	SMS (ENSPMRG00000004545) #36	PHEX (ENSPMRG00000004498) #37	PTCHD1 (ENSPMRG00000004487)	PRDX4 (ENSPMRG00000004476)
Argentine black and white tegu	MODERN SPECIES		GRPR (ENSSMRG00000022600)	CTPS2 (ENSSMRG00000022601) #7	SYAP1 (ENSSMRG00000022602) #9	TXLNG (ENSSMRG00000022603) #10	REPS2 (ENSSMRG00000022604) #12	NHS (ENSSMRG00000022606) #13	ENSSMRG00000022608 #15	ENSSMRG00000022609 #15	RAI2 (ENSSMRG00000022610) #14	SCML2 (ENSSMRG00000022611)	CDKL5 (ENSSMRG00000022612) #16	RS1 (ENSSMRG00000022613) #18	PPEF1 (ENSSMRG00000022614) #19	PHKA2 (ENSSMRG00000022615) #20	ADGRG2 (ENSSMRG00000022616) #21	ENSSMRG00000022619 #22	MAP3K15 (ENSSMRG00000022620) #23	SH3KBP1 (ENSSMRG00000022685) #24	BCLAF3 (ENSSMRG00000022709)	MAP7D2 (ENSSMRG00000022712) #26	EIF1AX (ENSSMRG00000022713) #28	ENSSMRG00000022727 #29	CNKSR2 (ENSSMRG00000022817) #32	ENSSMRG00000022818	SMPX (ENSSMRG00000022819) #33	MBTPS2 (ENSSMRG00000022820) #34	SMS (ENSSMRG00000022821) #36	PHEX (ENSSMRG00000022822) #37	PTCHD1 (ENSSMRG00000022824)	PRDX4 (ENSSMRG00000022825)	ACOT9 (ENSSMRG00000022826)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00950000183152.A	ENSGT00970000193372.a.a	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370.j #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Elapidae	ANCESTRAL SPECIES	13	ENSGT00950000183152.A	ENSGT00970000193372.a.a	ENSGT01100000263512.b.b.a.b	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886.a #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370.j.b #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Elapidae_a	ANCESTRAL SPECIES	16	ENSGT00950000183152.A	ENSGT00970000193372.a.a	ENSGT01100000263512.b.b.a.b	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886.a #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370.j.b #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Acanthophiinae	ANCESTRAL SPECIES	21	ENSGT00950000183152.A	ENSGT00970000193372.a.a	ENSGT01100000263512.b.b.a.b	ENSGT00910000144179.b.a #7	ENSGT00390000007662 #9	ENSGT00940000155463 #10	ENSGT00940000158080 #12	ENSGT00950000182963.b.a #13	ENSGT00940000154164.d #14	ENSGT00940000159407	ENSGT00940000157355 #16	ENSGT00940000161181 #18	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886.a #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370.j.b #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Mainland tiger snake	MODERN SPECIES	67	ZRSR2 (ENSNSUG00000012797)	ENSNSUG00000012796	GRPR (ENSNSUG00000012795)	SYAP1 (ENSNSUG00000012794) #9	CTPS2 (ENSNSUG00000012793) #7	TXLNG (ENSNSUG00000012789) #10	REPS2 (ENSNSUG00000012787) #12	NHS (ENSNSUG00000012782) #13	RAI2 (ENSNSUG00000012779) #14	SCML2 (ENSNSUG00000012778)	CDKL5 (ENSNSUG00000012777) #16	RS1 (ENSNSUG00000012776) #18	PPEF1 (ENSNSUG00000012746) #19	ENSNSUG00000012744 #20	ADGRG2 (ENSNSUG00000012742) #21	ENSNSUG00000012740 #22	MAP3K15 (ENSNSUG00000012661) #23	SH3KBP1 (ENSNSUG00000012391) #24	BCLAF3 (ENSNSUG00000012389)	ENSNSUG00000012387 #26	ENSNSUG00000012386 #26	ENSNSUG00000012384 #28	RPS6KA3 (ENSNSUG00000012329) #29	CNKSR2 (ENSNSUG00000011963) #32	KLHL34 (ENSNSUG00000011953)	SMPX (ENSNSUG00000011952) #33	MBTPS2 (ENSNSUG00000011951) #34	SMS (ENSNSUG00000011950) #36	PHEX (ENSNSUG00000011949) #37	ENSNSUG00000011948	ENSNSUG00000011947
Eastern brown snake	MODERN SPECIES	68	ZRSR2 (ENSPTXG00000005824)	AP1S2 (ENSPTXG00000005825)	GRPR (ENSPTXG00000005826)	CTPS2 (ENSPTXG00000005827) #7	SYAP1 (ENSPTXG00000005828) #9	TXLNG (ENSPTXG00000005829) #10	REPS2 (ENSPTXG00000005830) #12	NHS (ENSPTXG00000005831) #13	RAI2 (ENSPTXG00000005832) #14	ENSPTXG00000005833	CDKL5 (ENSPTXG00000005834) #16	RS1 (ENSPTXG00000005836) #18	PPEF1 (ENSPTXG00000005838) #19	PHKA2 (ENSPTXG00000005919) #20	ADGRG2 (ENSPTXG00000006028) #21	ENSPTXG00000006031 #22	MAP3K15 (ENSPTXG00000006040) #23	SH3KBP1 (ENSPTXG00000006343) #24	BCLAF3 (ENSPTXG00000006385)	MAP7D2 (ENSPTXG00000006388) #26	ENSPTXG00000006389 #28	RPS6KA3 (ENSPTXG00000006391) #29	CNKSR2 (ENSPTXG00000006394) #32	KLHL34 (ENSPTXG00000007069)	SMPX (ENSPTXG00000007070) #33	MBTPS2 (ENSPTXG00000007071) #34	SMS (ENSPTXG00000007072) #36	PHEX (ENSPTXG00000007074) #37	ENSPTXG00000007076	ENSPTXG00000007077	ENSPTXG00000007078
Blue-lipped sea krait	MODERN SPECIES	3879																ENSLLTG00000014040 #22	ENSLLTG00000014033 #23
Indian cobra	MODERN SPECIES	5	ZRSR2 (ENSNNAG00000016467)	AP1S2 (ENSNNAG00000016462)	ENSNNAG00000016420	SYAP1 (ENSNNAG00000016412) #9	CTPS2 (ENSNNAG00000016371) #7	TXLNG (ENSNNAG00000016235) #10	REPS2 (ENSNNAG00000016184) #12	NHS (ENSNNAG00000016137) #13	RAI2 (ENSNNAG00000016127) #14	SCML2 (ENSNNAG00000016034)	CDKL5 (ENSNNAG00000015926) #16	RS1 (ENSNNAG00000015902) #18	PPEF1 (ENSNNAG00000015798) #19	PHKA2 (ENSNNAG00000013955) #20	ADGRG2 (ENSNNAG00000013659) #21	ENSNNAG00000013584 #22	ENSNNAG00000013560 #23	ENSNNAG00000013538 #23	SH3KBP1 (ENSNNAG00000013422) #24	BCLAF3 (ENSNNAG00000013397)	MAP7D2 (ENSNNAG00000013341) #26	ENSNNAG00000013320 #28	RPS6KA3 (ENSNNAG00000012085) #29	CNKSR2 (ENSNNAG00000010893) #32	ENSNNAG00000010819	SMPX (ENSNNAG00000010781) #33	MBTPS2 (ENSNNAG00000010623) #34	SMS (ENSNNAG00000010591) #36	PHEX (ENSNNAG00000010440) #37	ENSNNAG00000010387	PRDX4 (ENSNNAG00000010298)
Lizard	MODERN SPECIES	2	SYAP1 (ENSACAG00000011393) #9	TXLNG (ENSACAG00000011478) #10	REPS2 (ENSACAG00000011590) #12	ENSACAG00000042988	ENSACAG00000042642	ENSACAG00000042117	NHS (ENSACAG00000011634) #13	ENSACAG00000040842	ENSACAG00000011661 #14	SCML2 (ENSACAG00000011680)	CDKL5 (ENSACAG00000011708) #16	ENSACAG00000011736	PPEF1 (ENSACAG00000011757) #19	PHKA2 (ENSACAG00000011798) #20	ADGRG2 (ENSACAG00000011948) #21	ENSACAG00000012190 #22	MAP3K15 (ENSACAG00000012298) #23	SH3KBP1 (ENSACAG00000012504) #24	ENSACAG00000040558	ENSACAG00000042897	BCLAF3 (ENSACAG00000012584)	MAP7D2 (ENSACAG00000012609) #26	ENSACAG00000012660 #28	ENSACAG00000012681 #29	ENSACAG00000035874	CNKSR2 (ENSACAG00000025299) #32	KLHL34 (ENSACAG00000016729)	SMPX (ENSACAG00000016732) #33	MBTPS2 (ENSACAG00000016735) #34	ENSACAG00000040170	ENSACAG00000016737 #36
tuatara	MODERN SPECIES	196		ENSSPUG00000017772	CTPS2 (ENSSPUG00000017782) #7	ENSSPUG00000017794	SYAP1 (ENSSPUG00000017802) #9	TXLNG (ENSSPUG00000017809) #10	RBBP7 (ENSSPUG00000017820) #11	REPS2 (ENSSPUG00000017827) #12	ENSSPUG00000017869 #15	SCML2 (ENSSPUG00000017922)	CDKL5 (ENSSPUG00000018011) #16	ENSSPUG00000018108	PPEF1 (ENSSPUG00000018122) #19	PHKA2 (ENSSPUG00000018218) #20	ADGRG2 (ENSSPUG00000018353) #21	ENSSPUG00000018366 #22	MAP3K15 (ENSSPUG00000018390) #23	SH3KBP1 (ENSSPUG00000018416) #24	BCLAF3 (ENSSPUG00000018428)	MAP7D2 (ENSSPUG00000018461) #26	EIF1AY (ENSSPUG00000018499) #28	RPS6KA3 (ENSSPUG00000018513) #29	CNKSR2 (ENSSPUG00000018596) #32	ENSSPUG00000018663	SMPX (ENSSPUG00000018668) #33	MBTPS2 (ENSSPUG00000018676) #34	SMS (ENSSPUG00000018687) #36	PHEX (ENSSPUG00000018709) #37	ENSSPUG00000018743	ENSSPUG00000018750	ENSSPUG00000018753
Anura	ANCESTRAL SPECIES	187												ENSGT00940000157355.g #16	ENSGT00940000159830 #19	ENSGT00950000183118.A.c.a #20	ENSGT00940000156341 #21	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37
Frog	MODERN SPECIES	2	hsf5 (ENSXETG00000033030)	rnf43 (ENSXETG00000037241)	supt4h1 (ENSXETG00000040160)	ENSXETG00000048486	tspoap1 (ENSXETG00000034008)	mpo (ENSXETG00000007787)	gdpd1 (ENSXETG00000007786)	zfx (ENSXETG00000007785)	adamts3 (ENSXETG00000006225)	acot9 (ENSXETG00000006223)	arsd (ENSXETG00000006221)	sat1 (ENSXETG00000006219)	apoo (ENSXETG00000006218)	cxorf58 (ENSXETG00000025336)	klhl15 (ENSXETG00000034785)	atg16l2 (ENSXETG00000006212) #22	map3k15 (ENSXETG00000006210) #23	sh3kbp1 (ENSXETG00000006205) #24	ENSXETG00000048959	bclaf3 (ENSXETG00000031425)	map7d2 (ENSXETG00000006203) #26	eif1ax (ENSXETG00000034472) #28	ENSXETG00000039947	rps6ka3 (ENSXETG00000010285) #29	cnksr2 (ENSXETG00000010286) #32	ENSXETG00000043747	klhl34 (ENSXETG00000003854)	smpx (ENSXETG00000032462) #33	mbtps2 (ENSXETG00000025771) #34	sms (ENSXETG00000003857) #36	phex (ENSXETG00000038825) #37
Leishan spiny toad	MODERN SPECIES	5	POLA1 (ENSLLEG00000003828)	PCYT1B (ENSLLEG00000003773)	PDK3 (ENSLLEG00000003751)	ENSLLEG00000003744	ENSLLEG00000003739	CDKL5 (ENSLLEG00000003678) #16	ENSLLEG00000003654	ENSLLEG00000003641	ENSLLEG00000003634	PPEF1 (ENSLLEG00000003604) #19	ENSLLEG00000003593	PHKA2 (ENSLLEG00000003359) #20	ENSLLEG00000003325	ADGRG2 (ENSLLEG00000003267) #21	ENSLLEG00000003249	ENSLLEG00000003143 #22	MAP3K15 (ENSLLEG00000003042) #23	ENSLLEG00000003017	SH3KBP1 (ENSLLEG00000002987) #24	ENSLLEG00000002975	BCLAF3 (ENSLLEG00000002957)	ENSLLEG00000002949	MAP7D2 (ENSLLEG00000002847) #26	ENSLLEG00000002796 #28	ENSLLEG00000002780	ENSLLEG00000002775	RPS6KA3 (ENSLLEG00000001162) #29	ENSLLEG00000000962	CNKSR2 (ENSLLEG00000000621) #32	KLHL34 (ENSLLEG00000000544)	SMPX (ENSLLEG00000000522) #33
Coelacanth	MODERN SPECIES	697														GRPR (ENSLACG00000001274)	ADGRG2 (ENSLACG00000007443) #21	pdha1b (ENSLACG00000010769) #22	MAP3K15 (ENSLACG00000011038) #23	ENSLACG00000012638	SH3KBP1 (ENSLACG00000012761) #24	BCLAF3 (ENSLACG00000014449)	b4galt4 (ENSLACG00000014768)	MAP7D2 (ENSLACG00000015065) #26	EIF1AX (ENSLACG00000015565) #28
Actinopterygii	ANCESTRAL SPECIES	26																ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00950000183163.b	ENSGT00950000182941.b.b #26	ENSGT00390000008256 #28	ENSGT00940000159370 #29	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330
Neopterygii	ANCESTRAL SPECIES	55	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00440000034309	ENSGT01050000244868	ENSGT00940000164731	ENSGT00550000074801	ENSGT00940000159116	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00530000063174.a #22	ENSGT00940000159562 #23	ENSGT00940000155886 #24	ENSGT00940000156709 #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT00940000164851	ENSGT00940000159906	ENSGT00940000163670	ENSGT00940000153251.a	ENSGT00940000156202.b	ENSGT00940000162182
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	99	ENSGT00440000034309	ENSGT01050000244868	ENSGT00940000164731	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370 #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00530000063174.a.k #22
Osteoglossiformes	ANCESTRAL SPECIES	67	ENSGT00940000156558	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00440000034309	ENSGT00940000164731.f	ENSGT00550000074801	ENSGT00940000159116	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00530000063174.a.k #22	ENSGT00940000159370.b #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.a #26	ENSGT00950000183163.b	ENSGT00940000156709.a #32	ENSGT00940000162424	ENSGT00390000017542 #33	ENSGT00510000048066 #34	ENSGT00870000136506 #36	ENSGT00940000157313 #37	ENSGT00940000157080	ENSGT01030000234935	ENSGT00940000164851.a.g	ENSGT00940000159906	ENSGT00940000163670.a.f
Asian bonytongue	MODERN SPECIES	16	zdhhc23b (ENSSFOG00015016585)	ccdc191 (ENSSFOG00015016617)	qtrt2 (ENSSFOG00015016750)	ENSSFOG00015016785	ENSSFOG00015016803	mix23 (ENSSFOG00015016820)	ENSSFOG00015016835	KPNA1 (ENSSFOG00015016843)	c8g (ENSSFOG00015016877)	ENSSFOG00015028584	eif2s3 (ENSSFOG00015016920)	klhl15 (ENSSFOG00015027608)	sat1b (ENSSFOG00015016956)	acot9.2 (ENSSFOG00015016982)	prdx4 (ENSSFOG00015017085)	pdha1b (ENSSFOG00015017120) #22	rps6ka3b (ENSSFOG00015017183) #29	ENSSFOG00015030262 #28	ENSSFOG00015031597 #26	ENSSFOG00015017260	ENSSFOG00015017263	CNKSR2 (ENSSFOG00015017278) #32	KLHL34 (ENSSFOG00015029024)	smpx (ENSSFOG00015017313) #33	mbtps2 (ENSSFOG00015017325) #34	sms (ENSSFOG00015017358) #36	phex (ENSSFOG00015017417) #37	PTCHD1 (ENSSFOG00015029116)	ENSSFOG00015017466	ENSSFOG00015012239	ENSSFOG00015017528
P. kingsleyae	MODERN SPECIES	412														acot9.2 (ENSPKIG00000011966)	prdx4 (ENSPKIG00000012090)	pdha1b (ENSPKIG00000012119) #22	rps6ka3b (ENSPKIG00000012175) #29	eif1axa (ENSPKIG00000012288) #28	ENSPKIG00000012358	CNKSR2 (ENSPKIG00000012427) #32	KLHL34 (ENSPKIG00000012518)	smpx (ENSPKIG00000012545) #33	mbtps2 (ENSPKIG00000012564) #34	sms (ENSPKIG00000012603) #36	phex (ENSPKIG00000012686) #37	USF3 (ENSPKIG00000012814)	naa50 (ENSPKIG00000012869)	ATP6V1A (ENSPKIG00000012921)	GRAMD1C (ENSPKIG00000012972)	zdhhc23b (ENSPKIG00000013009)	ccdc191 (ENSPKIG00000013036)
Clupeocephala	ANCESTRAL SPECIES	207	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000156508	ENSGT00940000157476	ENSGT00940000155240.B	ENSGT00440000034309	ENSGT01050000244868	ENSGT00940000164731	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00390000014424	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370 #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b
Otomorpha	ANCESTRAL SPECIES	111	ENSGT00940000156042	ENSGT00390000015971	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000156508.j	ENSGT00940000157476	ENSGT00940000155240.B	ENSGT00440000034309	ENSGT01050000244868	ENSGT00940000164731.l	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22
Otophysi	ANCESTRAL SPECIES	47	ENSGT00940000158260	ENSGT00940000162447	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.b.a.a	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k #22	ENSGT00940000159370.d #29	ENSGT00390000008256.rd.a #28	ENSGT00980000201894	ENSGT00390000008256.sd #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000007133	ENSGT00390000004601	ENSGT00940000160633.a.a
Characiphysae	ANCESTRAL SPECIES	17	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.b.a.a	ENSGT00940000154473.a	ENSGT00940000154004.a.e.b	ENSGT00940000159294	ENSGT00940000157658	ENSGT00390000014100.k.a	ENSGT00940000153141.B.b	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k #22	ENSGT00940000159370.d #29	ENSGT00390000008256.rd.b #28	ENSGT00980000201894	ENSGT00390000008256.sd #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000012054.a	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w
Characiphysae_b	ANCESTRAL SPECIES	52												ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k #22	ENSGT00940000159370.d #29	ENSGT00390000008256.rd.b #28	ENSGT00980000201894	ENSGT00390000008256.sd #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000012054.a	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w
Characoidei	ANCESTRAL SPECIES	14	ENSGT00550000074850	ENSGT00940000158260	ENSGT00940000162447	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.b.a.a	ENSGT00940000154004.a.e.b	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k #22	ENSGT00940000159370.d #29	ENSGT00980000201894	ENSGT00390000008256.sd #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000012054.a	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330
Red-bellied piranha	MODERN SPECIES	8	cops5 (ENSPNAG00000021972)	ppp1r42 (ENSPNAG00000021938)	TCF24 (ENSPNAG00000021920)	MCMDC2 (ENSPNAG00000021908)	sgk3 (ENSPNAG00000003699)	MYBL1 (ENSPNAG00000021760)	rrs1 (ENSPNAG00000021707)	ENSPNAG00000021695	trim55b (ENSPNAG00000021676)	DNAJC5B (ENSPNAG00000021634)	pde7a (ENSPNAG00000021598)	mtfr1 (ENSPNAG00000021553)	armc1 (ENSPNAG00000021521)	bhlhe22 (ENSPNAG00000006245)	ythdf3 (ENSPNAG00000021457)	pdha1b (ENSPNAG00000021432) #22	rps6ka3b (ENSPNAG00000021313) #29	ENSPNAG00000021247	eif1axb (ENSPNAG00000021235) #28	ENSPNAG00000021193 #26	ENSPNAG00000021173	zgc:112982 (ENSPNAG00000021161)	ENSPNAG00000021132	zgc:112408 (ENSPNAG00000021112)	ENSPNAG00000021084	lyz (ENSPNAG00000021068)	chodl (ENSPNAG00000021045)	ENSPNAG00000020982	apoob (ENSPNAG00000020954)	ATP8A2 (ENSPNAG00000020918)	SHISA2 (ENSPNAG00000020748)
Mexicana tetra	MODERN SPECIES	18	ppp1r42 (ENSAMXG00000013664)	TCF24 (ENSAMXG00000013680)	MCMDC2 (ENSAMXG00000013691)	sgk3 (ENSAMXG00000013716)	MYBL1 (ENSAMXG00000013759)	rrs1 (ENSAMXG00000037893)	ENSAMXG00000032945	trim55b (ENSAMXG00000013789)	DNAJC5B (ENSAMXG00000037384)	pde7a (ENSAMXG00000034112)	ENSAMXG00000029419	mtfr1 (ENSAMXG00000032269)	armc1 (ENSAMXG00000041843)	bhlhe22 (ENSAMXG00000026338)	ythdf3 (ENSAMXG00000030366)	pdha1b (ENSAMXG00000013896) #22	ENSAMXG00000030935	rps6ka3b (ENSAMXG00000013900) #29	ENSAMXG00000040423	eif1axb (ENSAMXG00000032495) #28	ENSAMXG00000013940 #26	ENSAMXG00000013954	ENSAMXG00000013967	zgc:112408 (ENSAMXG00000013983)	ENSAMXG00000039498	ENSAMXG00000042503	lyz (ENSAMXG00000014017)	chodl (ENSAMXG00000014033)	ENSAMXG00000014069	si:rp71-1f1.4 (ENSAMXG00000032627)	apoob (ENSAMXG00000014089)
Channel catfish	MODERN SPECIES	15	cops5 (ENSIPUG00000014614)	ppp1r42 (ENSIPUG00000014588)	TCF24 (ENSIPUG00000014579)	MCMDC2 (ENSIPUG00000014555)	sgk3 (ENSIPUG00000014487)	mybl1 (ENSIPUG00000014428)	rrs1 (ENSIPUG00000014412)	ENSIPUG00000014385	trim55 (ENSIPUG00000014351)	DNAJC5B (ENSIPUG00000014336)	pde7a (ENSIPUG00000014264)	mtfr1 (ENSIPUG00000014219)	armc1 (ENSIPUG00000014207)	bhlhe22 (ENSIPUG00000014202)	YTHDF1 (ENSIPUG00000014157)	pdha1b (ENSIPUG00000014101) #22	RPS6KA3 (ENSIPUG00000013955) #29	ENSIPUG00000013916 #28	map7d2 (ENSIPUG00000013874) #26	ENSIPUG00000013837	ENSIPUG00000013799	zgc:112408 (ENSIPUG00000013770)	Chodl (ENSIPUG00000013733)	c23h11orf65 (ENSIPUG00000013713)	si:rp71-1f1.4 (ENSIPUG00000013702)	apoob (ENSIPUG00000013681)	CNTNAP2 (ENSIPUG00000013587)	ENSIPUG00000013570	ENSIPUG00000013559	sec61g (ENSIPUG00000013553)	tpk1 (ENSIPUG00000013460)
Cyprinoidei	ANCESTRAL SPECIES	20								ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k #22	ENSGT00940000159370.d #29	ENSGT00390000008256.sd.a.b #28	ENSGT00980000201894	ENSGT00390000008256.sd.a.a #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000153832	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000007133	ENSGT00390000004601
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	237	ENSGT00940000158055.f	ENSGT00730000111111.n	ENSGT00940000153716.A.k.b	ENSGT00940000163831.e.b	ENSGT01030000234646.B.a.b.c.b	ENSGT00940000156040.e.c	ENSGT00940000154473.a.b	ENSGT00940000154004.a.e.b.f	ENSGT00940000154473.a.a.a	ENSGT00940000159294.d	ENSGT00940000157658.hb	ENSGT00950000183215.c.a.b.db	ENSGT00390000014100.k.b.c	ENSGT00940000162962.b	ENSGT00940000158777.r	ENSGT00530000063174.a.k.a.a #22	ENSGT00940000159370.d.d #29	ENSGT00940000166443.d.b	ENSGT01020000230438.A.l	ENSGT00390000010337.A.g	ENSGT00950000182952.E.c	ENSGT00950000182904.a.a.b.a.a	ENSGT00390000008256.sd.b #28	ENSGT00950000183163.b.j	ENSGT00940000166938.b	ENSGT01030000234614.B.a.b.d	ENSGT00940000159227	ENSGT00390000001844.a.a.d	ENSGT00940000166463	ENSGT00390000007133.b	ENSGT00390000004601.b
Goldfish	MODERN SPECIES	43	amer2 (ENSCARG00000048501)	mtmr6 (ENSCARG00000048697)	nup58 (ENSCARG00000052404)	zdhhc20b (ENSCARG00000052584)	slc51a (ENSCARG00000052714)	PDK3 (ENSCARG00000052772)	pcyt1ba (ENSCARG00000052996)	crhb (ENSCARG00000053003)	trim55b (ENSCARG00000053013)	DNAJC5B (ENSCARG00000053031)	pde7a (ENSCARG00000053100)	mtfr1 (ENSCARG00000054597)	armc1 (ENSCARG00000054617)	bhlhe22 (ENSCARG00000054642)	ythdf3 (ENSCARG00000054666)	pdha1b (ENSCARG00000054700) #22	rps6ka3b (ENSCARG00000055266) #29	eif1axb (ENSCARG00000056665) #28	ENSCARG00000056780 #26	zgc:112982 (ENSCARG00000056812)	ENSCARG00000056865	zgc:112408 (ENSCARG00000056892)	ENSCARG00000056923	chodl (ENSCARG00000056978)	ENSCARG00000056992	ENSCARG00000056994	ndufb4 (ENSCARG00000057018)	hgd (ENSCARG00000057042)	arxa (ENSCARG00000058049)	MYBL1 (ENSCARG00000018182)	sgk3 (ENSCARG00000018309)
Cyprininae_a	ANCESTRAL SPECIES	236	ENSGT00940000158055.f	ENSGT00730000111111.n	ENSGT00940000153716.A.k.b	ENSGT00940000163831.e.b	ENSGT01030000234646.B.a.b.c.b	ENSGT00940000156040.e.c	ENSGT00940000154473.a.b	ENSGT00940000154004.a.e.b.f	ENSGT00940000154473.a.a.a	ENSGT00940000159294.d	ENSGT00940000157658.hb	ENSGT00950000183215.c.a.b.db	ENSGT00390000014100.k.b.c	ENSGT00940000162962.b	ENSGT00940000158777.r	ENSGT00530000063174.a.k.a.a #22	ENSGT00940000159370.d.d #29	ENSGT00940000166443.d.b	ENSGT00390000008256.rd.a #28	ENSGT00950000182941.b.b.b.b.b #26	ENSGT00950000183163.b.j	ENSGT00940000166938.b	ENSGT01030000234614.B.a.b.d	ENSGT00940000159227	ENSGT00390000001844.a.a.d	ENSGT00390000007133.b	ENSGT00390000004601.b	ENSGT00940000160633.a.a.b	ENSGT00550000074891.d	ENSGT00390000005213.a	ENSGT00940000157709.i.a.a
Golden-line barbel	MODERN SPECIES	84	amer2 (ENSSGRG00000053103)	mtmr6 (ENSSGRG00000053098)	nup58 (ENSSGRG00000053078)	zdhhc20b (ENSSGRG00000053077)	slc51a (ENSSGRG00000053073)	ENSSGRG00000053069	pcyt1ba (ENSSGRG00000053061)	crhb (ENSSGRG00000053058)	trim55b (ENSSGRG00000053057)	DNAJC5B (ENSSGRG00000053056)	pde7a (ENSSGRG00000053044)	mtfr1 (ENSSGRG00000053043)	armc1 (ENSSGRG00000053042)	bhlhe22 (ENSSGRG00000053041)	ythdf3 (ENSSGRG00000053039)	pdha1b (ENSSGRG00000053038) #22	rps6ka3b (ENSSGRG00000052513) #29	ENSSGRG00000052497	eif1axb (ENSSGRG00000052419) #28	ENSSGRG00000052417 #26	zgc:112982 (ENSSGRG00000052415)	ENSSGRG00000052414	zgc:112408 (ENSSGRG00000052413)	lyz (ENSSGRG00000052409)	chodl (ENSSGRG00000052405)	ENSSGRG00000052403	hgd (ENSSGRG00000052378)	arxa (ENSSGRG00000052377)	pola1 (ENSSGRG00000052342)	rrs1 (ENSSGRG00000052338)	ENSSGRG00000052337
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000063174.a.k.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00530000063174.a.k.a.b #22
Golden-line barbel	MODERN SPECIES	125	ENSSGRG00000035270	ENSSGRG00000035264	amer2 (ENSSGRG00000035262)	mtmr6 (ENSSGRG00000034980)	nup58 (ENSSGRG00000034792)	zdhhc20b (ENSSGRG00000034392)	ENSSGRG00000034153	pcyt1ba (ENSSGRG00000034150)	crhb (ENSSGRG00000034149)	trim55b (ENSSGRG00000034147)	pde7a (ENSSGRG00000033676)	mtfr1 (ENSSGRG00000033664)	armc1 (ENSSGRG00000033663)	bhlhe22 (ENSSGRG00000033661)	ythdf3 (ENSSGRG00000033651)	pdha1b (ENSSGRG00000033648) #22	rps6ka3b (ENSSGRG00000031400) #29	ENSSGRG00000031338 #28	ENSSGRG00000031336 #26	zgc:112982 (ENSSGRG00000031335)	ENSSGRG00000031334	ENSSGRG00000031333	zgc:112408 (ENSSGRG00000031332)	lyz (ENSSGRG00000031330)	chodl (ENSSGRG00000031329)	ENSSGRG00000031327	ndufb4 (ENSSGRG00000031326)	hgd (ENSSGRG00000030715)	arxa (ENSSGRG00000030696)	pola1 (ENSSGRG00000029920)	rrs1 (ENSSGRG00000029903)
Cyprininae	ANCESTRAL SPECIES	45	ENSGT00530000063529.A.i.a	ENSGT00940000158055.e	ENSGT00730000111111.o	ENSGT00940000153716.A.k.a	ENSGT00940000163831.e.a	ENSGT01030000234646.B.a.b.c.a	ENSGT00940000156040.e.d	ENSGT00940000154004.a.e.b.e	ENSGT00940000154473.a.a.b	ENSGT00940000159294.c	ENSGT00940000157658.ib	ENSGT00950000183215.c.a.b.eb	ENSGT00390000014100.k.b.d	ENSGT00940000162962.a	ENSGT00940000158777.q	ENSGT00530000063174.a.k.b #22	ENSGT00940000159370.d.c #29	ENSGT00390000008256.sd.a.b #28	ENSGT00950000182941.b.b.b.b.a.a #26	ENSGT00950000183163.b.i	ENSGT00940000166938.a	ENSGT01030000234614.B.a.b.c	ENSGT00940000153832	ENSGT00390000001844.a.a.c	ENSGT00390000007133.a	ENSGT00390000004601.a	ENSGT00940000160633.a.a.a	ENSGT00550000074891.c	ENSGT00390000005213.b	ENSGT00940000157709.i.a.b	ENSGT00940000153776.a.a.h
Cyprininae_a	ANCESTRAL SPECIES	71	ENSGT00530000063529.A.i.a	ENSGT00940000158055.e	ENSGT00730000111111.o	ENSGT00940000153716.A.k.a	ENSGT00940000163831.e.a	ENSGT01030000234646.B.a.b.c.a	ENSGT00940000156040.e.d	ENSGT00940000154004.a.e.b.e	ENSGT00940000154473.a.a.b	ENSGT00940000159294.c	ENSGT00940000157658.ib	ENSGT00950000183215.c.a.b.eb	ENSGT00390000014100.k.b.d	ENSGT00940000162962.a	ENSGT00940000158777.q	ENSGT00530000063174.a.k.b #22	ENSGT00940000159370.d.c #29	ENSGT00390000008256.sd.a.a #28	ENSGT00950000182941.b.b.b.b.a.a #26	ENSGT00950000183163.b.i	ENSGT00940000166938.a	ENSGT01030000234614.B.a.b.c	ENSGT00940000153832	ENSGT00390000001844.a.a.c	ENSGT00940000166463	ENSGT00390000007133.a	ENSGT00390000004601.a	ENSGT00940000160633.a.a.a	ENSGT00550000074891.c	ENSGT00390000005213.b	ENSGT00940000157709.i.a.b
Common carp reference	MODERN SPECIES	14	cip2a (ENSCCRG00000023431)	si:ch73-264p11.1 (ENSCCRG00000055019)	ENSCCRG00000064131	ENSCCRG00000046672	mtmr6 (ENSCCRG00000048847)	nup58 (ENSCCRG00000056775)	slc51a (ENSCCRG00000034761)	ENSCCRG00000060877	trim55b (ENSCCRG00000038445)	crhb (ENSCCRG00000066422)	DNAJC5B (ENSCCRG00000016411)	pde7a (ENSCCRG00000056545)	mtfr1 (ENSCCRG00000075207)	armc1 (ENSCCRG00000066459)	ythdf3 (ENSCCRG00000061877)	pdha1b (ENSCCRG00000061388) #22	rps6ka3b (ENSCCRG00000021404) #29	eif1axb (ENSCCRG00000008453) #28	MAP7D2 (ENSCCRG00000073438) #26	zgc:112982 (ENSCCRG00000008429)	ENSCCRG00000008420	zgc:112408 (ENSCCRG00000059313)	ENSCCRG00000062456	chodl (ENSCCRG00000048479)	ndufb4 (ENSCCRG00000081842)	hgd (ENSCCRG00000048424)	arxa (ENSCCRG00000014710)	pola1 (ENSCCRG00000025848)	MYBL1 (ENSCCRG00000048895)	sgk3 (ENSCCRG00000048901)	MCMDC2 (ENSCCRG00000014581)
Zebrafish	MODERN SPECIES	16	amer2 (ENSDARG00000075222)	mtmr6 (ENSDARG00000016794)	nup58 (ENSDARG00000033965)	zdhhc20b (ENSDARG00000058178)	slc51a (ENSDARG00000045306)	PDK3 (ENSDARG00000014527)	pcyt1ba (ENSDARG00000058162)	crhb (ENSDARG00000027657)	trim55b (ENSDARG00000058158)	DNAJC5B (ENSDARG00000058147)	pde7a (ENSDARG00000045305)	mtfr1 (ENSDARG00000045304)	armc1 (ENSDARG00000013861)	bhlhe22 (ENSDARG00000058039)	ythdf3 (ENSDARG00000057939)	pdha1b (ENSDARG00000010555) #22	rps6ka3b (ENSDARG00000057927) #29	ENSDARG00000087483	eif1axb (ENSDARG00000057912) #28	MAP7D2 (ENSDARG00000045316) #26	zgc:112982 (ENSDARG00000001829)	ENSDARG00000005332	zgc:112408 (ENSDARG00000016207)	ENSDARG00000062519	lyz (ENSDARG00000057789)	chodl (ENSDARG00000034528)	ENSDARG00000090346	ndufb4 (ENSDARG00000019332)	hgd (ENSDARG00000058005)	arxa (ENSDARG00000058011)	pola1 (ENSDARG00000045308)
Clupeiformes	ANCESTRAL SPECIES	47	ENSGT00940000156042	ENSGT00390000015971	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000156508.j	ENSGT00940000157476	ENSGT00940000155240.B	ENSGT00440000034309	ENSGT01050000244868.e	ENSGT00940000164731.l	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22
Denticle herring	MODERN SPECIES	11	commd3 (ENSDCDG00000035751)	MLLT10 (ENSDCDG00000035748)	ENSDCDG00000035742	ENSDCDG00000035741	pip4k2aa (ENSDCDG00000035733)	ARMC3 (ENSDCDG00000035730)	msrb2 (ENSDCDG00000035726)	c8g (ENSDCDG00000035723)	ptgdsb.1 (ENSDCDG00000035718)	ENSDCDG00000035711	eif2s3 (ENSDCDG00000035700)	klhl15 (ENSDCDG00000035686)	apoob (ENSDCDG00000035682)	sat1b (ENSDCDG00000035679)	acot9.2 (ENSDCDG00000035675)	ENSDCDG00000035674 #22	rps6ka3b (ENSDCDG00000035665) #29	ENSDCDG00000035648	ENSDCDG00000035644	tmtopsb (ENSDCDG00000035640)	ENSDCDG00000035639	and1 (ENSDCDG00000035637)	cops9 (ENSDCDG00000035636)	otos (ENSDCDG00000035635)	apodb (ENSDCDG00000035632)	CLDN11 (ENSDCDG00000035630)	ENSDCDG00000035628	ENSDCDG00000035624	skilb (ENSDCDG00000035623)	zgc:194621 (ENSDCDG00000035622)	ENSDCDG00000035618
Euteleosteomorpha	ANCESTRAL SPECIES	135	ENSGT00940000160853	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000155920	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.f
Acanthomorphata	ANCESTRAL SPECIES	144					ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01070000255370	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b
Percomorphaceae	ANCESTRAL SPECIES	67	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b
Tiger tail seahorse	MODERN SPECIES	39	psme2 (ENSHCOG00000008277)	RNF31 (ENSHCOG00000008270)	ENSHCOG00000008265	emc9 (ENSHCOG00000008256)	ENSHCOG00000008243	ENSHCOG00000008236	ENSHCOG00000008232	ENSHCOG00000008215	ENSHCOG00000008195	ENSHCOG00000008183	vipr2 (ENSHCOG00000008103)	ENSHCOG00000008090	msl2b (ENSHCOG00000008058)	tnfsf10 (ENSHCOG00000008056)	nceh1b.1 (ENSHCOG00000008011)	pdha1b (ENSHCOG00000007812) #22	rps6ka3b (ENSHCOG00000007777) #29	eif1axa (ENSHCOG00000007746) #28	ENSHCOG00000007743	ENSHCOG00000007734	ENSHCOG00000007711	lztfl1 (ENSHCOG00000007637)	DNAJC13 (ENSHCOG00000007182)	topbp1 (ENSHCOG00000002411)	ENSHCOG00000002387	gli3 (ENSHCOG00000002344)	prpf4bb (ENSHCOG00000002237)	PXDC1 (ENSHCOG00000002223)	TMX3 (ENSHCOG00000002207)	DSEL (ENSHCOG00000002183)	ENSHCOG00000002172
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01020000230622	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Cyprinodontiformes	ANCESTRAL SPECIES	36	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00950000182941.b.b.b.b #26	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.q.a.a	ENSGT01030000234893.b
Cyprinodontoidei	ANCESTRAL SPECIES	48	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00950000182941.b.b.b.b #26	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.q.a.a	ENSGT01030000234893.b.a.a
Poeciliinae	ANCESTRAL SPECIES	33	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000171984.f	ENSGT00940000153251.a	ENSGT00940000155244.c.c.b.a	ENSGT00940000155244.c.c.b.b	ENSGT00940000159794	ENSGT00940000154641.C.b.h.g.a	ENSGT01050000244843.c.a.a.a.b.b.a.a.b.a	ENSGT00940000158239.a.b	ENSGT01030000234893.b.b
Poecilia	ANCESTRAL SPECIES	70	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.a.a.b	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984.f	ENSGT00940000153251.a	ENSGT00940000155244.c.c.b.a	ENSGT00940000155244.c.c.b.b	ENSGT00940000159794	ENSGT00940000158239.a.b	ENSGT01030000234893.b.b	ENSGT00940000154641.C.b.h.g.a	ENSGT01050000244843.c.a.a.a.b.b.a.a.b.a
NAME_6	ANCESTRAL SPECIES	193	ENSGT00940000155893.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.a.a.b	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22
Sailfin molly	MODERN SPECIES	1791															ENSPLAG00000018716	pdha1b (ENSPLAG00000018747) #22	ENSPLAG00000018756	ENSPLAG00000018767	ENSPLAG00000000425	ENSPLAG00000018784
Amazon molly	MODERN SPECIES	850			ENSPFOG00000008689	rpl22l1 (ENSPFOG00000023086)	ENSPFOG00000008700	ENSPFOG00000008774	ENSPFOG00000008963	ENSPFOG00000009163	ENSPFOG00000009245	ENSPFOG00000009396	eif2s3 (ENSPFOG00000009544)	klhl15 (ENSPFOG00000009668)	apoob (ENSPFOG00000009802)	sat1b (ENSPFOG00000009808)	acot9.2 (ENSPFOG00000009814)	ENSPFOG00000010048 #22
Guppy	MODERN SPECIES	451	ENSPREG00000010910	ENSPREG00000010921	rpl22l1 (ENSPREG00000010924)	ENSPREG00000010946	ENSPREG00000010957	ENSPREG00000010976	ENSPREG00000011035	ENSPREG00000011082	ENSPREG00000011102	ENSPREG00000011127	eif2s3 (ENSPREG00000011148)	klhl15 (ENSPREG00000011196)	apoob (ENSPREG00000011228)	sat1b (ENSPREG00000011242)	acot9.2 (ENSPREG00000011268)	pdha1b (ENSPREG00000011312) #22	ENSPREG00000011343	rps6ka3b (ENSPREG00000011354) #29	eif1axa (ENSPREG00000011381) #28	ENSPREG00000011406	ENSPREG00000011428	ENSPREG00000011459	ENSPREG00000011470	cip2a (ENSPREG00000011485)	ENSPREG00000011514	chrnd (ENSPREG00000011542)	ENSPREG00000011584	ENSPREG00000011594	ENSPREG00000011607	ENSPREG00000011625	FZD7 (ENSPREG00000011636)
Platyfish	MODERN SPECIES	13	cldn11b (ENSXMAG00000021629)	ENSXMAG00000012058	ENSXMAG00000026098	rpl22l1 (ENSXMAG00000012049)	ENSXMAG00000023682	tnika (ENSXMAG00000021927)	PLD1 (ENSXMAG00000011913)	ENSXMAG00000027353	ENSXMAG00000025874	ENSXMAG00000011895	eif2s3 (ENSXMAG00000011878)	klhl15 (ENSXMAG00000023286)	apoob (ENSXMAG00000011828)	sat1b (ENSXMAG00000011825)	acot9.2 (ENSXMAG00000011796)	pdha1b (ENSXMAG00000011748) #22	ENSXMAG00000024066	ENSXMAG00000022340	ENSXMAG00000023723	ENSXMAG00000023950	rps6ka3b (ENSXMAG00000023369) #29	eif1axb (ENSXMAG00000021594) #28	ENSXMAG00000010229	ENSXMAG00000010235	ENSXMAG00000010252	si:ch73-264p11.1 (ENSXMAG00000010256)	cip2a (ENSXMAG00000022014)	ENSXMAG00000026348	chrnd (ENSXMAG00000022574)	ENSXMAG00000025603	ENSXMAG00000022125
NAME_4	ANCESTRAL SPECIES	181	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.d	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00950000182941.b.b.b.b #26
Mummichog	MODERN SPECIES	424	ENSFHEG00000006896	cldn11b (ENSFHEG00000006881)	ENSFHEG00000006878	rpl22l1 (ENSFHEG00000006859)	ENSFHEG00000006842	TNIK (ENSFHEG00000006806)	PLD1 (ENSFHEG00000006649)	ENSFHEG00000006624	ENSFHEG00000006585	ENSFHEG00000000176	eif2s3 (ENSFHEG00000006575)	klhl15 (ENSFHEG00000006527)	apoob (ENSFHEG00000006467)	sat1b (ENSFHEG00000006333)	acot9.2 (ENSFHEG00000006439)	pdha1b (ENSFHEG00000006301) #22	rps6ka3b (ENSFHEG00000006236) #29	ENSFHEG00000006180	eif1axb (ENSFHEG00000006145) #28	ENSFHEG00000006117
Sheepshead minnow	MODERN SPECIES	153	LRRTM4 (ENSCVAG00000015393)	ENSCVAG00000015401	anapc5 (ENSCVAG00000015468)	rpl22l1 (ENSCVAG00000015479)	ENSCVAG00000015500	TNIK (ENSCVAG00000015809)	PLD1 (ENSCVAG00000015855)	ENSCVAG00000015869	ENSCVAG00000015934	ENSCVAG00000015983	eif2s3 (ENSCVAG00000016029)	klhl15 (ENSCVAG00000016060)	apoob (ENSCVAG00000016067)	sat1b (ENSCVAG00000016096)	acot9.2 (ENSCVAG00000016180)	pdha1b (ENSCVAG00000016266) #22	rps6ka3b (ENSCVAG00000016379) #29	eif1axa (ENSCVAG00000016422) #28	ENSCVAG00000016438	ENSCVAG00000016468 #26
Aplocheiloidei	ANCESTRAL SPECIES	232															ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00950000182941.b.b.b.b #26	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794
Mangrove rivulus	MODERN SPECIES	1132																pdha1b (ENSKMAG00000002562) #22
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015023353	ENSNFUG00015023094	PLD1 (ENSNFUG00015022401)	ENSNFUG00015022386	ENSNFUG00015022383	ENSNFUG00015022379	EIF2S3 (ENSNFUG00015022366)	KLHL15 (ENSNFUG00015022361)	APOO (ENSNFUG00015022353)	SATL1 (ENSNFUG00015022339)	ENSNFUG00015022335	ENSNFUG00015022327	ENSNFUG00015022320 #26	ENSNFUG00015022301	ACOT9 (ENSNFUG00015022286)	pdha1b (ENSNFUG00015022255) #22	EIF1AXB (ENSNFUG00015022210) #28	rps6ka3b (ENSNFUG00015021708) #29	ENSNFUG00015021682	ENSNFUG00015021671	ENSNFUG00015021667	ENSNFUG00015021665	ENSNFUG00015020152	vipr2 (ENSNFUG00015020031)	ENSNFUG00015020026	ENSNFUG00015020021	Nfu_g_1_011390 (ENSNFUG00015020016)	MSL2 (ENSNFUG00015020008)	ENSNFUG00015020003	TNFSF10 (ENSNFUG00015019995)	ENSNFUG00015019990
Oryzias	ANCESTRAL SPECIES	18	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00940000159794	ENSGT01030000235460	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00940000167175.b.a	ENSGT00940000165646.B	ENSGT00940000159794
Indian medaka	MODERN SPECIES	23	ENSOMEG00000019943	ENSOMEG00000019918	ENSOMEG00000019804	ENSOMEG00000019792	ENSOMEG00000019773	ENSOMEG00000019764	hmgb2b (ENSOMEG00000019748)	arcn1b (ENSOMEG00000000523)	ENSOMEG00000019644	ENSOMEG00000019633	eif2s3 (ENSOMEG00000019582)	klhl15 (ENSOMEG00000019521)	apoob (ENSOMEG00000019455)	sat1b (ENSOMEG00000019425)	acot9.2 (ENSOMEG00000019355)	pdha1b (ENSOMEG00000019268) #22	rps6ka3b (ENSOMEG00000019141) #29	ENSOMEG00000018980 #28	ENSOMEG00000018949	chrnd (ENSOMEG00000018863)	RSBN1 (ENSOMEG00000018827)	MAGI3 (ENSOMEG00000018795)	tmem269 (ENSOMEG00000018680)	HSPG2 (ENSOMEG00000018627)	agmat (ENSOMEG00000018397)	ENSOMEG00000018370	pink1 (ENSOMEG00000018348)	ENSOMEG00000018314	ENSOMEG00000018309	ENSOMEG00000018291	fam43b (ENSOMEG00000018278)
Javanese ricefish	MODERN SPECIES	12	ENSOJAG00000015366	ENSOJAG00000015373	cldn11b (ENSOJAG00000015394)	ENSOJAG00000015402	rpl22l1 (ENSOJAG00000015425)	ENSOJAG00000015496	PLD1 (ENSOJAG00000017535)	ENSOJAG00000018452	ENSOJAG00000018484	eif2s3 (ENSOJAG00000018554)	klhl15 (ENSOJAG00000018890)	ENSOJAG00000018928	sat1b (ENSOJAG00000018975)	ENSOJAG00000018990	acot9.2 (ENSOJAG00000019022)	pdha1b (ENSOJAG00000019101) #22	rps6ka3b (ENSOJAG00000019490) #29	eif1axb (ENSOJAG00000019878) #28	ENSOJAG00000019907	ENSOJAG00000019913	ENSOJAG00000019924	ENSOJAG00000019945	ENSOJAG00000019955	ENSOJAG00000019967	ENSOJAG00000020039	ENSOJAG00000020242	vipr2 (ENSOJAG00000022609)	ENSOJAG00000022643	chrnd (ENSOJAG00000022674)	ENSOJAG00000022913	ENSOJAG00000022918
Oryzias_a	ANCESTRAL SPECIES	82	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00940000159794	ENSGT01030000235460	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Chinese medaka	MODERN SPECIES	812													eif1axb (ENSOSIG00000010416) #28	rps6ka3b (ENSOSIG00000010565) #29	acot9.2 (ENSOSIG00000020624)	pdha1b (ENSOSIG00000020628) #22
Japanese Medaka HdrR	MODERN SPECIES	12	rpl22l1 (ENSORLG00000002916)	ENSORLG00000027121	TNIK (ENSORLG00000002885)	PLD1 (ENSORLG00000002792)	ENSORLG00000024083	ENSORLG00000002741	ENSORLG00000002722	eif2s3 (ENSORLG00000002716)	klhl15 (ENSORLG00000018526)	APOO (ENSORLG00000002692)	ENSORLG00000027784	ENSORLG00000002683	ENSORLG00000027078	sat1b (ENSORLG00000002664)	acot9.2 (ENSORLG00000002637)	pdha1b (ENSORLG00000002588) #22	rps6ka3b (ENSORLG00000002556) #29	eif1axb (ENSORLG00000002444) #28	chrnd (ENSORLG00000026994)	ENSORLG00000024488	ENSORLG00000023761	ENSORLG00000019029	ENSORLG00000002403	ENSORLG00000027020	ENSORLG00000002349	ENSORLG00000022594	ENSORLG00000022921	ENSORLG00000024603	ENSORLG00000030174	ENSORLG00000026556	ENSORLG00000026602
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT01020000230622	ENSGT00940000162944	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r
Cichlidae	ANCESTRAL SPECIES	79						ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b	ENSGT01050000244843.c.a.a.a.a.a	ENSGT00940000163670.b.a.m
Pseudocrenilabrinae	ANCESTRAL SPECIES	52							ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	67					ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00730000111293.d	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Haplochromini	ANCESTRAL SPECIES	77						ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Burton s mouthbrooder	MODERN SPECIES	727						ENSHBUG00000011641	ENSHBUG00000011662	ENSHBUG00000011699	ENSHBUG00000011711	ENSHBUG00000011717	klhl15 (ENSHBUG00000000322)	eif2s3 (ENSHBUG00000011793)	ENSHBUG00000011808	sat1b (ENSHBUG00000011831)	acot9.2 (ENSHBUG00000011854)	ENSHBUG00000011863 #22	rps6ka3b (ENSHBUG00000011916) #29	eif1axb (ENSHBUG00000011962) #28	ENSHBUG00000011971	ENSHBUG00000011983	ENSHBUG00000011986	cip2a (ENSHBUG00000012253)	chrnd (ENSHBUG00000012293)
Haplochromini_A	ANCESTRAL SPECIES	81				ENSGT00940000163670.b.a.n.a.a.b	ENSGT01070000253760.b.a.a.a.a.b.a.a	ENSGT01050000244843.c.a.a.a.a.a	ENSGT00940000155015.g.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
P. nyererei	MODERN SPECIES	655								ENSPNYG00000001223	ENSPNYG00000001175	ENSPNYG00000001135	eif2s3 (ENSPNYG00000001094)	klhl15 (ENSPNYG00000001030)	apoob (ENSPNYG00000000880)	sat1b (ENSPNYG00000000840)	acot9.2 (ENSPNYG00000000825)	ENSPNYG00000024273 #22	rps6ka3b (ENSPNYG00000024272) #29	ENSPNYG00000024271	eif1axb (ENSPNYG00000024270) #28	zgc:112982 (ENSPNYG00000024269)	ENSPNYG00000024268	ENSPNYG00000024267	ENSPNYG00000024266	chrnd (ENSPNYG00000024265)	ENSPNYG00000024264
Haplochromini_B	ANCESTRAL SPECIES	90	ENSGT00940000163670.b.a.n.a.a.a.a.a	ENSGT00940000163670.b.a.n.a.a.a.a.b.a	ENSGT01050000244843.c.a.a.a.a.b.b	ENSGT00940000163670.b.a.n.a.a.b	ENSGT01070000253760.b.a.a.a.a.b.a.a	ENSGT01050000244843.c.a.a.a.a.a	ENSGT00940000155015.g.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Zebra mbuna	MODERN SPECIES	1112	ENSMZEG00005022880	ENSMZEG00005022878	scn5lab (ENSMZEG00005020832)	ENSMZEG00005020759	ENSMZEG00005020757	ENSMZEG00005020748	ENSMZEG00005020745	ENSMZEG00005020736	ENSMZEG00005020731	ENSMZEG00005020725	eif2s3 (ENSMZEG00005020717)	klhl15 (ENSMZEG00005020694)	apoob (ENSMZEG00005020685)	sat1b (ENSMZEG00005020683)	acot9.2 (ENSMZEG00005020672)	pdha1b (ENSMZEG00005020652) #22	rps6ka3b (ENSMZEG00005020643) #29	ENSMZEG00005020627	eif1axb (ENSMZEG00005020621) #28	MAP7D2 (ENSMZEG00005020617) #26	ENSMZEG00005020613	ENSMZEG00005020610	si:ch73-264p11.1 (ENSMZEG00005020606)	cip2a (ENSMZEG00005020597)	chrnd (ENSMZEG00005020586)	ENSMZEG00005020578	ENSMZEG00005020574	ENSMZEG00005020571	ENSMZEG00005020568	ENSMZEG00005020562	ENSMZEG00005020561
Eastern happy	MODERN SPECIES	21	ENSACLG00000014542	ENSACLG00000014552	ENSACLG00000014570	ENSACLG00000014600	ENSACLG00000014636	ENSACLG00000014706	ENSACLG00000014729	ENSACLG00000014780	ENSACLG00000014787	ENSACLG00000014820	eif2s3 (ENSACLG00000014869)	klhl15 (ENSACLG00000014951)	apoob (ENSACLG00000015002)	sat1b (ENSACLG00000015045)	acot9.2 (ENSACLG00000015069)	pdha1b (ENSACLG00000015121) #22	rps6ka3b (ENSACLG00000015200) #29	ENSACLG00000015383	eif1axb (ENSACLG00000015402) #28	rps6ka3b (ENSACLG00000015458) #29	ENSACLG00000015521	ENSACLG00000015542	si:ch73-264p11.1 (ENSACLG00000015564)	cip2a (ENSACLG00000015575)	chrnd (ENSACLG00000015676)	ENSACLG00000015735	ENSACLG00000015763	ENSACLG00000015781	ENSACLG00000015798	ENSACLG00000015810	ENSACLG00000015816
Lyretail cichlid	MODERN SPECIES	497				ENSNBRG00000009279	ENSNBRG00000009269	ENSNBRG00000009249	ENSNBRG00000009144	ENSNBRG00000009014	ENSNBRG00000008983	eif2s3 (ENSNBRG00000008945)	klhl15 (ENSNBRG00000008874)	apoob (ENSNBRG00000008780)	sat1b (ENSNBRG00000008755)	ENSNBRG00000008732	ACOT9 (ENSNBRG00000008713)	pdha1b (ENSNBRG00000008654) #22	ENSNBRG00000008630	rps6ka3b (ENSNBRG00000008589) #29	ENSNBRG00000008410	eif1axb (ENSNBRG00000008321) #28	ENSNBRG00000008311	ENSNBRG00000008271	si:ch73-264p11.1 (ENSNBRG00000008252)	cip2a (ENSNBRG00000008195)	ENSNBRG00000008164
Nile tilapia	MODERN SPECIES	21	ENSONIG00000038190	ENSONIG00000032379	ENSONIG00000041971	ENSONIG00000030531	ENSONIG00000042484	ENSONIG00000031655	ENSONIG00000008255	ENSONIG00000008253	ENSONIG00000008245	ENSONIG00000008244	eif2s3 (ENSONIG00000008238)	klhl15 (ENSONIG00000008235)	apoob (ENSONIG00000008234)	sat1b (ENSONIG00000008231)	acot9.2 (ENSONIG00000008224)	pdha1b (ENSONIG00000008220) #22	rps6ka3b (ENSONIG00000008212) #29	ENSONIG00000008211	eif1axb (ENSONIG00000008209) #28	ENSONIG00000039125	ENSONIG00000008205	ENSONIG00000035557	zgc:112408 (ENSONIG00000008203)	ENSONIG00000041543	ENSONIG00000041226	cip2a (ENSONIG00000008200)	chrnd (ENSONIG00000008195)	ENSONIG00000008274	ENSONIG00000031140	ENSONIG00000042402	ENSONIG00000028402
Midas cichlid	MODERN SPECIES	243			ENSACIG00000009945	ENSACIG00000009925	ENSACIG00000009868	ENSACIG00000009862	ENSACIG00000009810	ENSACIG00000009682	ENSACIG00000009663	ENSACIG00000009634	eif2s3 (ENSACIG00000009600)	klhl15 (ENSACIG00000009569)	apoob (ENSACIG00000009540)	sat1b (ENSACIG00000009518)	acot9.2 (ENSACIG00000009312)	pdha1b (ENSACIG00000009242) #22	rps6ka3b (ENSACIG00000009187) #29	ENSACIG00000009172	eif1axa (ENSACIG00000009147) #28	zgc:112982 (ENSACIG00000009107)	ENSACIG00000009042	zgc:112408 (ENSACIG00000008945)	si:ch73-264p11.1 (ENSACIG00000008933)	cip2a (ENSACIG00000008726)	ENSACIG00000008703	ENSACIG00000008692	ENSACIG00000008679
Pomacentridae	ANCESTRAL SPECIES	80	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330.k	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794
Pomacentridae_A	ANCESTRAL SPECIES	114	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330.l	ENSGT00390000005330.k	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.k.a.a	ENSGT01050000244843.c.a.a.a.a.a
Amphiprion	ANCESTRAL SPECIES	145	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000167146	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330.k	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794
Clown anemonefish	MODERN SPECIES	583															acot9.2 (ENSAOCG00000012352)	ENSAOCG00000012275 #22	mms22l (ENSAOCG00000012132)	klhl32 (ENSAOCG00000012098)	fzd6 (ENSAOCG00000012030)	CTHRC1 (ENSAOCG00000012016)	slc25a32b (ENSAOCG00000012002)	dcaf13 (ENSAOCG00000011982)	RIMS2 (ENSAOCG00000002333)	ENSAOCG00000011877	TMEM74 (ENSAOCG00000011861)	emc2 (ENSAOCG00000011848)	eif3ea (ENSAOCG00000011820)	RSPO2 (ENSAOCG00000011743)	ENSAOCG00000011719	ENSAOCG00000011558	ENSAOCG00000011232
Orange clownfish	MODERN SPECIES	14	cldn11b (ENSAPEG00000004102)	ENSAPEG00000004137	rpl22l1 (ENSAPEG00000004158)	ENSAPEG00000004194	TNIK (ENSAPEG00000004265)	PLD1 (ENSAPEG00000004358)	ENSAPEG00000004692	ENSAPEG00000004761	ENSAPEG00000004810	eif2s3 (ENSAPEG00000004840)	klhl15 (ENSAPEG00000004899)	apoob (ENSAPEG00000004940)	sat1b (ENSAPEG00000004956)	ercc4 (ENSAPEG00000004992)	acot9.2 (ENSAPEG00000005026)	pdha1b (ENSAPEG00000005170) #22	rps6ka3b (ENSAPEG00000005334) #29	eif1axb (ENSAPEG00000005361) #28	ENSAPEG00000005388	ENSAPEG00000005437	zgc:112408 (ENSAPEG00000005537)	ENSAPEG00000005552	cip2a (ENSAPEG00000005607)	chrnd (ENSAPEG00000005864)	ENSAPEG00000005905	ENSAPEG00000005941	ENSAPEG00000005948	ENSAPEG00000005972	ENSAPEG00000006017	mbtps2 (ENSAPEG00000006028) #34	phex (ENSAPEG00000006079) #37
Spiny chromis	MODERN SPECIES	2452													sat1b (ENSAPOG00000022051)	ENSAPOG00000022024	acot9.2 (ENSAPOG00000022003)	pdha1b (ENSAPOG00000021974) #22
Bicolor damselfish	MODERN SPECIES	379	cldn11b (ENSSPAG00000016900)	ENSSPAG00000016908	rpl22l1 (ENSSPAG00000016926)	ENSSPAG00000016936	TNIK (ENSSPAG00000016970)	PLD1 (ENSSPAG00000017147)	ENSSPAG00000017182	ENSSPAG00000017210	ENSSPAG00000017232	ENSSPAG00000017266	eif2s3 (ENSSPAG00000017292)	klhl15 (ENSSPAG00000017346)	apoob (ENSSPAG00000017433)	sat1b (ENSSPAG00000017441)	acot9.2 (ENSSPAG00000017464)	pdha1b (ENSSPAG00000017523) #22	rps6ka3b (ENSSPAG00000017578) #29	eif1axb (ENSSPAG00000017728) #28	ENSSPAG00000017763	ENSSPAG00000017805	zgc:112408 (ENSSPAG00000017869)	ENSSPAG00000017877	cip2a (ENSSPAG00000017905)	chrnd (ENSSPAG00000018044)	ENSSPAG00000018072	ENSSPAG00000018087	ENSSPAG00000018108	ENSSPAG00000018148	ENSSPAG00000018155	ENSSPAG00000018163	ENSSPAG00000018180
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f
Tetraodontidae	ANCESTRAL SPECIES	18		ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000159906.f	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01030000234839	ENSGT00940000178471	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i	ENSGT00390000006738.b
Tetraodon	MODERN SPECIES	26	cldn11b (ENSTNIG00000004126)	ENSTNIG00000004125	rpl22l1 (ENSTNIG00000002562)	ENSTNIG00000002563	TNIK (ENSTNIG00000002564)	PLD1 (ENSTNIG00000004569)	ENSTNIG00000004568	ENSTNIG00000004567	ENSTNIG00000004566	ENSTNIG00000004565	eif2s3 (ENSTNIG00000004564)	klhl15 (ENSTNIG00000004563)	apoob (ENSTNIG00000004562)	sat1b (ENSTNIG00000004561)	acot9.2 (ENSTNIG00000004560)	pdha1b (ENSTNIG00000004559) #22	eif1axb (ENSTNIG00000004558) #28	ENSTNIG00000005358 #26	ENSTNIG00000005359	ENSTNIG00000005360	cip2a (ENSTNIG00000005361)	chrnd (ENSTNIG00000005362)	RAMP3 (ENSTNIG00000000529)	pck2 (ENSTNIG00000005363)	psme1 (ENSTNIG00000005364)	FITM1 (ENSTNIG00000005365)	dcaf11 (ENSTNIG00000005366)	thtpa (ENSTNIG00000005367)	ENSTNIG00000005368	pabpn1 (ENSTNIG00000005369)	ngdn (ENSTNIG00000018972)
Fugu	MODERN SPECIES	1	ENSTRUG00000024361	ENSTRUG00000029298	cldn11b (ENSTRUG00000002558)	ENSTRUG00000002825	rpl22l1 (ENSTRUG00000003154)	ENSTRUG00000028500	TNIK (ENSTRUG00000003746)	PLD1 (ENSTRUG00000005513)	ENSTRUG00000024494	ENSTRUG00000006284	eif2s3 (ENSTRUG00000002867)	klhl15 (ENSTRUG00000003735)	apoob (ENSTRUG00000020497)	sat1 (ENSTRUG00000004500)	acot9.2 (ENSTRUG00000025401)	pdha1b (ENSTRUG00000004842) #22	rps6ka3b (ENSTRUG00000005953) #29	eif1axb (ENSTRUG00000007017) #28	zgc:112982 (ENSTRUG00000030957)	ENSTRUG00000021004	cip2a (ENSTRUG00000007460)	chrnd (ENSTRUG00000007767)	ENSTRUG00000026541	ENSTRUG00000026253	ENSTRUG00000029428	ENSTRUG00000030554	ENSTRUG00000021344	ENSTRUG00000029422	ENSTRUG00000031426	ENSTRUG00000022953	ENSTRUG00000025737
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r
Ballan wrasse	MODERN SPECIES	247	ENSLBEG00000015410	cldn11b (ENSLBEG00000015436)	ENSLBEG00000015504	rpl22l1 (ENSLBEG00000015538)	ENSLBEG00000015561	TNIK (ENSLBEG00000015697)	PLD1 (ENSLBEG00000016081)	ENSLBEG00000016367	ENSLBEG00000016408	ENSLBEG00000016465	eif2s3 (ENSLBEG00000016518)	klhl15 (ENSLBEG00000016636)	apoob (ENSLBEG00000016692)	SAT1 (ENSLBEG00000016728)	acot9.2 (ENSLBEG00000016764)	pdha1b (ENSLBEG00000016861) #22	ENSLBEG00000017002	rps6ka3b (ENSLBEG00000017057) #29	eif1axb (ENSLBEG00000017217) #28	MAP7D2 (ENSLBEG00000017278) #26
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r
Perciformes	ANCESTRAL SPECIES	21	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839
Cottioidei	ANCESTRAL SPECIES	43	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00940000167218	ENSGT00940000166938	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Lumpfish	MODERN SPECIES	12	cldn11b (ENSCLMG00005015810)	ENSCLMG00005015812	rpl22l1 (ENSCLMG00005015813)	ENSCLMG00005015816	TNIK (ENSCLMG00005015930)	PLD1 (ENSCLMG00005022514)	ENSCLMG00005022576	ENSCLMG00005022579	ENSCLMG00005022580	ENSCLMG00005022582	eif2s3 (ENSCLMG00005022585)	klhl15 (ENSCLMG00005022591)	apoob (ENSCLMG00005022593)	sat1b (ENSCLMG00005022594)	acot9.2 (ENSCLMG00005022595)	pdha1b (ENSCLMG00005022597) #22	rps6ka3b (ENSCLMG00005022625) #29	eif1axb (ENSCLMG00005022745) #28	ENSCLMG00005022747	ENSCLMG00005022748	ENSCLMG00005022753	cip2a (ENSCLMG00005022754)	chrnd (ENSCLMG00005022755)	ENSCLMG00005022763	ENSCLMG00005022764	ENSCLMG00005022765	ENSCLMG00005022766	ENSCLMG00005022767	ENSCLMG00005022769	ENSCLMG00005022770	ENSCLMG00005022778
Stickleback	MODERN SPECIES	100	ENSGACG00000012533	rpl22l1 (ENSGACG00000012539)	ENSGACG00000012547	ENSGACG00000012551	TNIK (ENSGACG00000012636)	PLD1 (ENSGACG00000012653)	ENSGACG00000012668	ENSGACG00000012670	ENSGACG00000012676	eif2s3 (ENSGACG00000012678)	ENSGACG00000012719	klhl15 (ENSGACG00000012722)	apoob (ENSGACG00000012729)	sat1b (ENSGACG00000012745)	acot9.2 (ENSGACG00000012775)	pdha1b (ENSGACG00000012803) #22	rps6ka3b (ENSGACG00000012811) #29	ENSGACG00000012824	ENSGACG00000012827	eif1axa (ENSGACG00000012829) #28	ENSGACG00000012862	ENSGACG00000012864	ENSGACG00000012869	ENSGACG00000012889	cip2a (ENSGACG00000012895)	ENSGACG00000012920
Perciformes_a	ANCESTRAL SPECIES	36	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839	ENSGT00390000016814.a
Channel bull blenny	MODERN SPECIES	58								cip2a (ENSCGOG00000006875)	ENSCGOG00000006880	ENSCGOG00000006881	ENSCGOG00000006889	ENSCGOG00000006918 #28	ENSCGOG00000006932 #29	eif1axb (ENSCGOG00000006934) #28	rps6ka3b (ENSCGOG00000007214) #29	ENSCGOG00000008722 #22	acot9.2 (ENSCGOG00000008848)	sat1b (ENSCGOG00000009063)	ENSCGOG00000009072	ENSCGOG00000009081
Pike perch	MODERN SPECIES	66	cldn11b (ENSSLUG00000025135)	ENSSLUG00000025142	rpl22l1 (ENSSLUG00000025147)	ENSSLUG00000025150	TNIK (ENSSLUG00000025231)	PLD1 (ENSSLUG00000025491)	ENSSLUG00000025496	ENSSLUG00000025500	ENSSLUG00000025504	ENSSLUG00000025512	eif2s3 (ENSSLUG00000025517)	klhl15 (ENSSLUG00000025521)	apoob (ENSSLUG00000025526)	SAT1 (ENSSLUG00000025529)	acot9.2 (ENSSLUG00000025539)	pdha1b (ENSSLUG00000025557) #22	rps6ka3b (ENSSLUG00000025805) #29	eif1axb (ENSSLUG00000025957) #28	ENSSLUG00000025958	ENSSLUG00000025962	si:ch73-264p11.1 (ENSSLUG00000025964)	cip2a (ENSSLUG00000025966)	chrnd (ENSSLUG00000025974)	ENSSLUG00000025980	ENSSLUG00000025982	ENSSLUG00000025984	ENSSLUG00000025988	ENSSLUG00000025992	ENSSLUG00000025993	ENSSLUG00000025994	ENSSLUG00000001456
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
European seabass	MODERN SPECIES	27	ENSDLAG00005030333	ENSDLAG00005011123	ENSDLAG00005027293	RPL22L1 (ENSDLAG00005032982)	ENSDLAG00005011026	TNIK (ENSDLAG00005010108)	PLD1 (ENSDLAG00005007504)	ENSDLAG00005030583	ENSDLAG00005007369	ENSDLAG00005028096	EIF2S3 (ENSDLAG00005007326)	KLHL15 (ENSDLAG00005007280)	SAT1 (ENSDLAG00005032687)	apoob (ENSDLAG00005034422)	ENSDLAG00005006633	pdha1b (ENSDLAG00005005291) #22	rps6ka3b (ENSDLAG00005002745) #29	EIF1AX (ENSDLAG00005002070) #28	MAP7D2 (ENSDLAG00005033599) #26	ENSDLAG00005018441	ENSDLAG00005002036	ENSDLAG00005002029	ENSDLAG00005002032	ENSDLAG00005029940	ENSDLAG00005001957	ENSDLAG00005001891	ENSDLAG00005031056	ENSDLAG00005003733	ENSDLAG00005003517	ENSDLAG00005021572	ENSDLAG00005003728
Large yellow croaker	MODERN SPECIES	494	scn5lab (ENSLCRG00005008654)	ENSLCRG00005008655	ASPH (ENSLCRG00005008656)	CLVS1 (ENSLCRG00005008658)	riok3 (ENSLCRG00005008668)	rmc1 (ENSLCRG00005010094)	ENSLCRG00005011930	ENSLCRG00005011942	ENSLCRG00005011950	ENSLCRG00005011957	eif2s3 (ENSLCRG00005011960)	klhl15 (ENSLCRG00005011997)	apoob (ENSLCRG00005011999)	sat1b (ENSLCRG00005012000)	acot9.2 (ENSLCRG00005012001)	pdha1b (ENSLCRG00005012031) #22	rps6ka3b (ENSLCRG00005012483) #29	eif1axb (ENSLCRG00005014231) #28	ENSLCRG00005014232	ENSLCRG00005014233	ENSLCRG00005014234	zgc:112408 (ENSLCRG00005014238)	si:ch73-264p11.1 (ENSLCRG00005014239)	cip2a (ENSLCRG00005014244)	chrnd (ENSLCRG00005014431)	ENSLCRG00005015138	ENSLCRG00005015140	ENSLCRG00005015144	ENSLCRG00005015145	ENSLCRG00005015146	ENSLCRG00005015284
Gilthead seabream	MODERN SPECIES	10	cul1a (ENSSAUG00010019856)	ENSSAUG00010019851	ENSSAUG00010019850	cldn11b (ENSSAUG00010019849)	ENSSAUG00010019840	rpl22l1 (ENSSAUG00010019828)	ENSSAUG00010019827	ENSSAUG00010019826	ENSSAUG00010019824	ENSSAUG00010019822	eif2s3 (ENSSAUG00010019821)	klhl15 (ENSSAUG00010019818)	apoob (ENSSAUG00010019817)	SAT1 (ENSSAUG00010019816)	acot9.2 (ENSSAUG00010019801)	pdha1b (ENSSAUG00010018922) #22	rps6ka3b (ENSSAUG00010018399) #29	eif1axa (ENSSAUG00010018382) #28	ENSSAUG00010018376 #26	ENSSAUG00010018347	ENSSAUG00010018338	ENSSAUG00010018333	ENSSAUG00010018332	zgc:112408 (ENSSAUG00010018326)	ENSSAUG00010018320	ENSSAUG00010018319	cip2a (ENSSAUG00010018314)	ENSSAUG00010018308	ENSSAUG00010018304	ENSSAUG00010018302	chrnd (ENSSAUG00010017696)
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000163670.a
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000162944	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Climbing perch	MODERN SPECIES	11	ENSATEG00000021701	cldn11b (ENSATEG00000021669)	ENSATEG00000021661	rpl22l1 (ENSATEG00000021655)	ENSATEG00000021651	TNIK (ENSATEG00000021510)	PLD1 (ENSATEG00000021446)	ENSATEG00000029348	ENSATEG00000021401	ENSATEG00000021387	EIF2S3 (ENSATEG00000021353)	KLHL15 (ENSATEG00000021306)	apoob (ENSATEG00000021274)	SAT1 (ENSATEG00000027737)	acot9.2 (ENSATEG00000021219)	pdha1b (ENSATEG00000021171) #22	rps6ka3b (ENSATEG00000021130) #29	ENSATEG00000021109 #28	ENSATEG00000029236	ENSATEG00000021059	ENSATEG00000021034	si:ch73-264p11.1 (ENSATEG00000027625)	cip2a (ENSATEG00000021007)	ENSATEG00000020988	ENSATEG00000020914	ENSATEG00000025347	ENSATEG00000020895	ENSATEG00000020949	ENSATEG00000020928	ENSATEG00000020859	ENSATEG00000020838
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000022762	cldn11b (ENSBSLG00000022802)	rpl22l1 (ENSBSLG00000022834)	ENSBSLG00000022874	TNIK (ENSBSLG00000022922)	PLD1 (ENSBSLG00000023303)	ENSBSLG00000023424	ENSBSLG00000023425	ENSBSLG00000023430	ENSBSLG00000023432	eif2s3 (ENSBSLG00000023435)	klhl15 (ENSBSLG00000023568)	apoob (ENSBSLG00000023588)	sat1b (ENSBSLG00000023650)	acot9.2 (ENSBSLG00000023878)	pdha1b (ENSBSLG00000023974) #22	rps6ka3b (ENSBSLG00000024096) #29	eif1axa (ENSBSLG00000000507) #28	ENSBSLG00000000545	si:ch73-264p11.1 (ENSBSLG00000000573)	cip2a (ENSBSLG00000000647)	chrnd (ENSBSLG00000000807)	ENSBSLG00000000902	ENSBSLG00000000905	ENSBSLG00000001196	ENSBSLG00000001229	ENSBSLG00000001273	ENSBSLG00000001327	vipr2 (ENSBSLG00000002174)	ENSBSLG00000002300	ENSBSLG00000002402
Zig-zag eel	MODERN SPECIES	84	ENSMAMG00000024768	PLD1 (ENSMAMG00000008804)	TNIK (ENSMAMG00000008652)	ENSMAMG00000025758	rpl22l1 (ENSMAMG00000027001)	ENSMAMG00000008571	cldn11b (ENSMAMG00000008567)	ENSMAMG00000024458	ENSMAMG00000027758	ENSMAMG00000008523	ENSMAMG00000028670	ENSMAMG00000008465	ENSMAMG00000008409	ENSMAMG00000026991	ENSMAMG00000008372	pdha1b (ENSMAMG00000008314) #22	rps6ka3b (ENSMAMG00000008244) #29	ENSMAMG00000008210 #28	ENSMAMG00000008191	ENSMAMG00000008162	ENSMAMG00000008156	ENSMAMG00000008116	ENSMAMG00000027653	ENSMAMG00000008050	ENSMAMG00000008024	ENSMAMG00000027419	ENSMAMG00000026304	ENSMAMG00000007995	ENSMAMG00000027562	ENSMAMG00000025296	ENSMAMG00000007909
Carangaria	ANCESTRAL SPECIES	21	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00970000198434	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT01030000235646	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00970000198434	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT00940000163670.a
Seriola	ANCESTRAL SPECIES	93	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a
Yellowtail amberjack	MODERN SPECIES	3269	cldn11b (ENSSLDG00000009470)	ENSSLDG00000009454	rpl22l1 (ENSSLDG00000009433)	ENSSLDG00000009425	TNIK (ENSSLDG00000009349)	PLD1 (ENSSLDG00000009257)	ENSSLDG00000009061	ENSSLDG00000009013	ENSSLDG00000008919	ENSSLDG00000008895	eif2s3 (ENSSLDG00000008861)	klhl15 (ENSSLDG00000008828)	apoob (ENSSLDG00000008807)	sat1b (ENSSLDG00000008762)	acot9.2 (ENSSLDG00000008700)	pdha1b (ENSSLDG00000008595) #22	rps6ka3b (ENSSLDG00000008512) #29	eif1axb (ENSSLDG00000008477) #28	ENSSLDG00000008459	ENSSLDG00000008434	ENSSLDG00000008415	cip2a (ENSSLDG00000008285)	ENSSLDG00000008244	ENSSLDG00000008239	ENSSLDG00000008228	ENSSLDG00000008212	ENSSLDG00000008099	ENSSLDG00000008058	ENSSLDG00000008008	ENSSLDG00000007984	ssr1 (ENSSLDG00000007929)
Greater amberjack	MODERN SPECIES	232	ENSSDUG00000003267	cldn11b (ENSSDUG00000003286)	ENSSDUG00000003298	rpl22l1 (ENSSDUG00000003315)	ENSSDUG00000003339	TNIK (ENSSDUG00000003392)	PLD1 (ENSSDUG00000003806)	ENSSDUG00000003923	ENSSDUG00000003976	ENSSDUG00000003953	eif2s3 (ENSSDUG00000003993)	klhl15 (ENSSDUG00000004040)	apoob (ENSSDUG00000004092)	sat1b (ENSSDUG00000004109)	acot9.2 (ENSSDUG00000004138)	pdha1b (ENSSDUG00000004167) #22	rps6ka3b (ENSSDUG00000004281) #29	eif1axb (ENSSDUG00000004342) #28	ENSSDUG00000004371	ENSSDUG00000004408	si:ch73-264p11.1 (ENSSDUG00000004463)	cip2a (ENSSDUG00000004494)	ENSSDUG00000004514	ENSSDUG00000004529	ENSSDUG00000004545	ENSSDUG00000004552	ENSSDUG00000004565
Barramundi perch	MODERN SPECIES	84	cldn11b (ENSLCAG00010025391)	ENSLCAG00010025400	rpl22l1 (ENSLCAG00010025405)	ENSLCAG00010025413	TNIK (ENSLCAG00010025747)	PLD1 (ENSLCAG00010026279)	ENSLCAG00010026523	ENSLCAG00010026524	ENSLCAG00010026527	ENSLCAG00010026530	eif2s3 (ENSLCAG00010026535)	klhl15 (ENSLCAG00010026543)	apoob (ENSLCAG00010026548)	sat1b (ENSLCAG00010026550)	acot9.2 (ENSLCAG00010026553)	pdha1b (ENSLCAG00010026561) #22	rps6ka3b (ENSLCAG00010026763) #29	eif1axb (ENSLCAG00010026993) #28	ENSLCAG00010026996	ENSLCAG00010026998	ENSLCAG00010027003	zgc:112408 (ENSLCAG00010027005)	ENSLCAG00010027007	cip2a (ENSLCAG00010027009)	chrnd (ENSLCAG00010027017)	ENSLCAG00010027028	ENSLCAG00010027032	ENSLCAG00010027034	ENSLCAG00010027035	ENSLCAG00010027036	ENSLCAG00010027037
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00730000111293	ENSGT00940000156456	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.f #29	ENSGT00390000008256 #28	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00970000198434	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Tongue sole	MODERN SPECIES	13	cldn11b (ENSCSEG00000016055)	ENSCSEG00000016043	rpl22l1 (ENSCSEG00000015879)	ENSCSEG00000015853	TNIK (ENSCSEG00000015735)	PLD1 (ENSCSEG00000015688)	ENSCSEG00000015676	ENSCSEG00000015669	ENSCSEG00000015658	eif2s3 (ENSCSEG00000015632)	klhl15 (ENSCSEG00000015599)	ENSCSEG00000015582	apoob (ENSCSEG00000015570)	SAT1 (ENSCSEG00000015551)	acot9.2 (ENSCSEG00000015508)	pdha1b (ENSCSEG00000015446) #22	rps6ka3b (ENSCSEG00000015334) #29	eif1axb (ENSCSEG00000015312) #28	ENSCSEG00000015303	ENSCSEG00000015295	lsm5 (ENSCSEG00000015286)	psme2 (ENSCSEG00000015276)	ENSCSEG00000015262	irf9 (ENSCSEG00000015254)	u2surp (ENSCSEG00000015150)	pcolce2b (ENSCSEG00000015120)	trpc1 (ENSCSEG00000015097)	CHST2 (ENSCSEG00000015090)	dipk2ab (ENSCSEG00000015087)	plod2 (ENSCSEG00000015021)	ENSCSEG00000014990
Turbot	MODERN SPECIES	13	ENSSMAG00000028898	ENSSMAG00000011846	ENSSMAG00000011883	ENSSMAG00000011952	ENSSMAG00000027407	ENSSMAG00000012113	ENSSMAG00000029677	ENSSMAG00000012144	ENSSMAG00000012161	ENSSMAG00000009528	cip2a (ENSSMAG00000009573)	ENSSMAG00000009652	ENSSMAG00000009669	ENSSMAG00000009714	eif1axb (ENSSMAG00000009834) #28	ENSSMAG00000009879 #22	ENSSMAG00000009979 #29	acot9.2 (ENSSMAG00000010044)	SAT1 (ENSSMAG00000010106)	apoob (ENSSMAG00000030113)	KLHL15 (ENSSMAG00000010151)	EIF2S3 (ENSSMAG00000010192)	ENSSMAG00000010225	ENSSMAG00000010241	PLD1 (ENSSMAG00000010266)	TNIK (ENSSMAG00000008153)	ENSSMAG00000031145	rpl22l1 (ENSSMAG00000008211)	ENSSMAG00000008228	cldn11b (ENSSMAG00000023927)	ENSSMAG00000026407
Pinecone sodierfish	MODERN SPECIES	12	cul1a (ENSMMDG00005021328)	cldn11b (ENSMMDG00005021322)	ENSMMDG00005021318	rpl22l1 (ENSMMDG00005021313)	ENSMMDG00005021310	ENSMMDG00005021256	ENSMMDG00005020772	ENSMMDG00005020737	ENSMMDG00005020734	ENSMMDG00005020729	eif2s3 (ENSMMDG00005020684)	klhl15 (ENSMMDG00005020671)	apoob (ENSMMDG00005020668)	sat1b (ENSMMDG00005020664)	acot9.2 (ENSMMDG00005020007)	pdha1b (ENSMMDG00005019137) #22	rps6ka3b (ENSMMDG00005014542) #29	eif1axb (ENSMMDG00005014437) #28	zgc:112982 (ENSMMDG00005014429)	ENSMMDG00005014380	zgc:112408 (ENSMMDG00005014371)	ENSMMDG00005014364	cip2a (ENSMMDG00005014067)	chrnd (ENSMMDG00005014054)	ENSMMDG00005014050	ENSMMDG00005014048	ENSMMDG00005014046	ENSMMDG00005014043	ENSMMDG00005014031	vipr2 (ENSMMDG00005013952)	ENSMMDG00005013947
Cod	MODERN SPECIES	15	ENSGMOG00000007557	ENSGMOG00000034460	ENSGMOG00000024783	ENSGMOG00000007561	ENSGMOG00000029655	ENSGMOG00000004233	ENSGMOG00000004236	ENSGMOG00000036824	EIF2S3 (ENSGMOG00000004311)	ENSGMOG00000004337	ENSGMOG00000004355	ENSGMOG00000006922	SAT1 (ENSGMOG00000032336)	ENSGMOG00000025106	ENSGMOG00000004381	pdha1b (ENSGMOG00000004411) #22	rps6ka3b (ENSGMOG00000004426) #29	ENSGMOG00000036612	eif1axb (ENSGMOG00000004469) #28	ENSGMOG00000033880	ENSGMOG00000031715	ENSGMOG00000029023	ENSGMOG00000023804	ENSGMOG00000010863	ENSGMOG00000030781	ENSGMOG00000007643	ENSGMOG00000034157	ENSGMOG00000034915	ENSGMOG00000007655	ENSGMOG00000027383	CPA6 (ENSGMOG00000017058)
Protacanthopterygii	ANCESTRAL SPECIES	70	ENSGT01030000234598.a.a.a.a	ENSGT00940000160853	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.vd.b #28	ENSGT01030000235646	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1010																ENSGT00530000063174.a.k.c.a.a #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.vd.b.b #28	ENSGT00950000183163.b.m	ENSGT00940000166938.c	ENSGT00940000155920.k.a
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00530000063174.a.k.c.a.a #22
Salmo	ANCESTRAL SPECIES	3	ENSGT00390000000076	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.vd.b.b #28	ENSGT00530000063174.a.k.c.a.a #22	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd.a.b #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b.m	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.g.a	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c
River trout	MODERN SPECIES	156																ENSSTUG00000035151 #22
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000094346	ENSSSAG00000077888	ENSSSAG00000077895	apod (ENSSSAG00000077906)	ENSSSAG00000080287	ENSSSAG00000077916	ENSSSAG00000106166	ENSSSAG00000077932	KLHL15 (ENSSSAG00000077983)	ENSSSAG00000099404	apoob (ENSSSAG00000097184)	ENSSSAG00000112612	SAT1 (ENSSSAG00000078009)	ACOT9 (ENSSSAG00000109432)	sat1b (ENSSSAG00000111429)	pdha1b (ENSSSAG00000080177) #22	RPS6KA3 (ENSSSAG00000077150) #29	ENSSSAG00000076877 #28	ENSSSAG00000099356 #26	ENSSSAG00000078061	ENSSSAG00000088995	ENSSSAG00000078074	ENSSSAG00000078092	kiaa1524 (ENSSSAG00000078099)	ENSSSAG00000078120	ENSSSAG00000121263	ENSSSAG00000116217	ENSSSAG00000118236	ENSSSAG00000078131	ENSSSAG00000062619	ENSSSAG00000078145
Huchen	MODERN SPECIES	1322															ENSHHUG00000006571	pdha1b (ENSHHUG00000006779) #22	ENSHHUG00000006827 #29	ENSHHUG00000007832 #28	ENSHHUG00000007936	ENSHHUG00000007942	ENSHHUG00000007965	cip2a (ENSHHUG00000008008)	ENSHHUG00000008025	pawr (ENSHHUG00000008029)	ENSHHUG00000008038
Salmoninae	ANCESTRAL SPECIES	678														ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00530000063174.a.k.c.a.b #22	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h	ENSGT00390000007726.a.a.h	ENSGT00950000183137.a.k.c	ENSGT00390000005639.a.b.d.a.d	ENSGT00530000063586.a.o.b
Salmoninae_a	ANCESTRAL SPECIES	71	ENSGT00940000159406.g	ENSGT00940000159378	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284.wb	ENSGT00940000159342.b.h	ENSGT00390000010763	ENSGT00800000124177	ENSGT00530000063564.a.q	ENSGT00940000164383	ENSGT00940000157798.b.f.a.a	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00530000063174.a.k.c.a.b #22	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h	ENSGT00390000007726.a.a.h	ENSGT00950000183137.a.k.c	ENSGT00390000005639.a.b.d.a.d	ENSGT00530000063586.a.o.b	ENSGT00940000153692.B.b.f	ENSGT00950000183015.B.a.b.k.a	ENSGT00940000165944.b	ENSGT00940000156026.e	ENSGT00730000111333.a
Salmo	ANCESTRAL SPECIES	29	ENSGT00390000000403.f	ENSGT00940000159406.g	ENSGT00940000159378	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284.wb	ENSGT00940000159342.b.h	ENSGT00390000010763	ENSGT00800000124177	ENSGT00530000063564.a.q	ENSGT00940000164383	ENSGT00940000157798.b.f.a.a	ENSGT00940000155133.a.a.a	ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00530000063174.a.k.c.a.b #22	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h	ENSGT00390000007726.a.a.h	ENSGT00950000183137.a.k.c	ENSGT00390000005639.a.b.d.a.d	ENSGT00530000063586.a.o.b	ENSGT00940000153692.B.b.f	ENSGT00950000183015.B.a.b.k.a	ENSGT00940000165944.b	ENSGT00940000156026.e	ENSGT00730000111333.a
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000040812	sirt1 (ENSSSAG00000040786)	dnajc12 (ENSSSAG00000040776)	COX5B (ENSSSAG00000040757)	herc4 (ENSSSAG00000039908)	fam83h (ENSSSAG00000081215)	ENSSSAG00000081122	lrrfip2 (ENSSSAG00000081070)	abcc2 (ENSSSAG00000080954)	ENSSSAG00000108258	ENSSSAG00000099422	ENSSSAG00000080902	ENSSSAG00000080900	ENSSSAG00000080897	ENSSSAG00000101192	ENSSSAG00000080888 #22	prdm8 (ENSSSAG00000085200)	ENSSSAG00000080861	rrp12 (ENSSSAG00000080485)	ENSSSAG00000086687	zdhhc16a (ENSSSAG00000080436)	sufu (ENSSSAG00000111263)	oga (ENSSSAG00000080089)	ENSSSAG00000080066	ENSSSAG00000116511	ENSSSAG00000079953	ENSSSAG00000084238	mapk8a (ENSSSAG00000079743)	ENSSSAG00000079715	ENSSSAG00000079713	LRRC18 (ENSSSAG00000079709)
River trout	MODERN SPECIES	35	SIRT1 (ENSSTUG00000017950)	dnajc12 (ENSSTUG00000026267)	cox5b2 (ENSSTUG00000026278)	HERC4 (ENSSTUG00000026361)	ENSSTUG00000026635	ENSSTUG00000026644	ENSSTUG00000026671	mlh1 (ENSSTUG00000026736)	lrrfip2 (ENSSTUG00000027096)	ENSSTUG00000027613	KCNIP2 (ENSSTUG00000031971)	ENSSTUG00000032024	ENSSTUG00000032044	ENSSTUG00000032071	GDF10 (ENSSTUG00000032120)	ENSSTUG00000032133 #22	prdm8 (ENSSTUG00000032239)	ENSSTUG00000032249	rrp12 (ENSSTUG00000032472)	ubtd1b (ENSSTUG00000032762)	zdhhc16a (ENSSTUG00000032774)	ENSSTUG00000032789	sufu (ENSSTUG00000032803)	oga (ENSSTUG00000032916)	ENSSTUG00000035193	ldb1a (ENSSTUG00000035218)	ENSSTUG00000035312	mapk8a (ENSSTUG00000035357)	ARHGAP22 (ENSSTUG00000036227)	ENSSTUG00000036250	LRRC18 (ENSSTUG00000036274)
Huchen	MODERN SPECIES	435										ENSHHUG00000025706	ENSHHUG00000025702	ENSHHUG00000025692	ENSHHUG00000025689	ENSHHUG00000025685	GDF10 (ENSHHUG00000025670)	ENSHHUG00000025656 #22	prdm8 (ENSHHUG00000025652)	ENSHHUG00000025634	rrp12 (ENSHHUG00000025592)	UBTD1 (ENSHHUG00000025576)	zdhhc16a (ENSHHUG00000025557)	sufu (ENSHHUG00000025498)
Salmoninae	ANCESTRAL SPECIES	563														ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b #22	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd.a.b #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b.n	ENSGT00940000166938.d	ENSGT00940000155920.k.b	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT01070000255370	ENSGT00940000163670.b.a.gb.a	ENSGT00940000163670.a	ENSGT00940000159906.f.g.a	ENSGT00940000157755.r.e	ENSGT00950000182997.b.l.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00500000045505.b.g	ENSGT00390000000076	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.a	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b #22	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd.a.b #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b.n	ENSGT00940000166938.d	ENSGT00940000155920.k.b	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT01090000260281.b.a	ENSGT00990000206793.a.b.a	ENSGT00390000016814.a.d	ENSGT01070000253816.b.c.b	ENSGT00950000183196.B.e.e.a	ENSGT00390000003738.b.d.a.d	ENSGT00940000154509.ad.a
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c	ENSGT00940000160853.f	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076.z.b	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b #22	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd.a.b #28	ENSGT00390000008256.vd.b.b #28	ENSGT01030000235646.a	ENSGT00950000183163.b.n	ENSGT00940000166938.d	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT00950000182997.b.l.b.b.a	ENSGT00940000158089.b.f	ENSGT01090000260281.b.b.b	ENSGT00990000206793.a.a	ENSGT00390000016814.a.d	ENSGT01070000253816.b.c.b	ENSGT00950000183196.B.e.e.a
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00940000155886.r #24	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c	ENSGT00940000160853.f	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076.z.b	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b #22	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd.a.b #28	ENSGT00950000183163.b.n	ENSGT00940000166938.d	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT00990000204208	ENSGT00940000157755.r.e	ENSGT00950000182997.b.l.b.b.a	ENSGT00940000158089.b.f	ENSGT01090000260281.b.b.b	ENSGT00990000206793.a.a	ENSGT00390000016814.a.d	ENSGT01070000253816.b.c.b	ENSGT00950000183196.B.e.e.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2992	ENSOTSG00005040480	ENSOTSG00005040478 #24	ENSOTSG00005040477	ENSOTSG00005040476	ENSOTSG00005040475	and1 (ENSOTSG00005040474)	ENSOTSG00005040472	apodb (ENSOTSG00005040470)	ENSOTSG00005040467	ENSOTSG00005040463	eif2s3 (ENSOTSG00005040462)	klhl15 (ENSOTSG00005040460)	APOO (ENSOTSG00005040459)	ACOT9 (ENSOTSG00005039546)	sat1b (ENSOTSG00005039542)	ENSOTSG00005039537 #22	ENSOTSG00005039535 #29	ENSOTSG00005045813 #28	ENSOTSG00005045810	ENSOTSG00005045809	ENSOTSG00005045808	ENSOTSG00005045807	sft2d2b (ENSOTSG00005045806)	ENSOTSG00005045805	ENSOTSG00005045804	eed (ENSOTSG00005045802)	hikeshi (ENSOTSG00005045801)	pwp2h (ENSOTSG00005045800)	ENSOTSG00005045796	ENSOTSG00005045795	ENSOTSG00005045794
Chinook salmon	MODERN SPECIES	21	tagln3b (ENSOTSG00005011653)	ENSOTSG00005011651	ythdf3 (ENSOTSG00005011650)	ENSOTSG00005011649	ENSOTSG00005011647	ENSOTSG00005011645 #24	ENSOTSG00005011642	ENSOTSG00005011641	and1 (ENSOTSG00005011640)	ENSOTSG00005011639	apodb (ENSOTSG00005011638)	eif2s3 (ENSOTSG00005011637)	klhl15 (ENSOTSG00005011636)	ACOT9 (ENSOTSG00005011625)	sat1b (ENSOTSG00005011622)	ENSOTSG00005011619 #22	ENSOTSG00005011618 #29	ENSOTSG00005011617 #28	ENSOTSG00005011616	ENSOTSG00005011614	ENSOTSG00005011612	vipr2 (ENSOTSG00005011610)	ENSOTSG00005011609	ENSOTSG00005011608	msl2b (ENSOTSG00005011607)	tnfsf10 (ENSOTSG00005011606)	tnika (ENSOTSG00005009472)	ENSOTSG00005009461	rpl22l1 (ENSOTSG00005009458)	ENSOTSG00005009445	ENSOTSG00005009444
Coho salmon	MODERN SPECIES	2	ENSOKIG00005010104	tfr1b (ENSOKIG00005010144)	TNK2 (ENSOKIG00005010208)	ENSOKIG00005010287	and1 (ENSOKIG00005010301)	cops9 (ENSOKIG00005010335)	apodb (ENSOKIG00005002065)	ENSOKIG00005002079	ENSOKIG00005002103	ENSOKIG00005002244	ENSOKIG00005002630	KLHL15 (ENSOKIG00005002642)	apoob (ENSOKIG00005002661)	SAT1 (ENSOKIG00005002682)	ACOT9 (ENSOKIG00005002720)	pdha1b (ENSOKIG00005002760) #22	ENSOKIG00005002940 #29	ENSOKIG00005003103 #28	ENSOKIG00005003130	ENSOKIG00005003148	cip2a (ENSOKIG00005003212)	ENSOKIG00005003381	ENSOKIG00005003405	ENSOKIG00005003437	ENSOKIG00005003441	ENSOKIG00005003454	ENSOKIG00005003522	ENSOKIG00005003688	ENSOKIG00005003705	ENSOKIG00005003708	ENSOKIG00005003710
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000052467	ENSOMYG00000071365	and1 (ENSOMYG00000010833)	ENSOMYG00000010821	apodb (ENSOMYG00000010815)	ENSOMYG00000059936	ENSOMYG00000070606	ENSOMYG00000010797	ENSOMYG00000070468	ENSOMYG00000010773	KLHL15 (ENSOMYG00000010735)	ENSOMYG00000067769	APOO (ENSOMYG00000010708)	ACOT9 (ENSOMYG00000010388)	sat1 (ENSOMYG00000010129)	ENSOMYG00000009989 #22	ENSOMYG00000077429	RPS6KA3 (ENSOMYG00000048494) #29	ENSOMYG00000009940 #28	ENSOMYG00000009891	ENSOMYG00000009814	ENSOMYG00000061987	ENSOMYG00000009741	ENSOMYG00000059277	ENSOMYG00000009689	ENSOMYG00000075911	ENSOMYG00000009544	ENSOMYG00000063126	ENSOMYG00000003890	ENSOMYG00000061118	ENSOMYG00000009518
Salmoninae	ANCESTRAL SPECIES	157	ENSGT01030000234598.a.a.a.a.d	ENSGT01030000234826	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00980000198875.g.a	ENSGT00390000011600.h	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00940000153430.a.a.i	ENSGT00530000063174.a.k.d #22	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.e.e.b	ENSGT00940000163015	ENSGT00390000003738.b.d.a.c
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00940000155886.q #24	ENSGT00940000159562 #23	ENSGT00990000205902.a	ENSGT01030000234598.a.a.a.a.d	ENSGT00940000160853.e	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.vd.b.b #28	ENSGT01030000235646.a	ENSGT00390000008256.wd.a.a #28	ENSGT00950000183163.b.m	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000160853.e	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00390000000076	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.vd.b.b #28	ENSGT00530000063174.a.k.c.a.a #22	ENSGT00940000159370.e.a #29	ENSGT00390000008256.wd.a.b #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b.m	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.g.a	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e
Atlantic salmon	MODERN SPECIES	10	and1 (ENSSSAG00000080293)	cops9 (ENSSSAG00000080290)	otos (ENSSSAG00000114510)	ENSSSAG00000116263	ENSSSAG00000112922	ENSSSAG00000108841	ENSSSAG00000080284	ENSSSAG00000080282	ENSSSAG00000080279	if2g (ENSSSAG00000080260)	ENSSSAG00000084918	KLHL15 (ENSSSAG00000080245)	ENSSSAG00000080233	SAT1 (ENSSSAG00000080231)	ACOT9 (ENSSSAG00000078036)	ENSSSAG00000076899 #22	RPS6KA3 (ENSSSAG00000078964) #29	ENSSSAG00000098060	EIF1AX (ENSSSAG00000078822) #28	ENSSSAG00000082016	MAP7D2 (ENSSSAG00000118996) #26	ENSSSAG00000078800	ENSSSAG00000078773	ENSSSAG00000109282	ENSSSAG00000078490	ENSSSAG00000082411	ENSSSAG00000078463	ENSSSAG00000107371	ENSSSAG00000108490	ENSSSAG00000077589	ENSSSAG00000077515
River trout	MODERN SPECIES	11	adipoqa (ENSSTUG00000016043)	and1 (ENSSTUG00000016052)	cops9 (ENSSTUG00000016062)	otos (ENSSTUG00000016077)	ENSSTUG00000016084	ENSSTUG00000016103	ENSSTUG00000016112	ENSSTUG00000016124	ENSSTUG00000016133	ENSSTUG00000026294	eif2s3 (ENSSTUG00000026335)	klhl15 (ENSSTUG00000026390)	apoob (ENSSTUG00000026467)	sat1b (ENSSTUG00000026547)	ACOT9 (ENSSTUG00000026585)	pdha1b (ENSSTUG00000026879) #22	RPS6KA3 (ENSSTUG00000026945) #29	EIF1AX (ENSSTUG00000027208) #28	ENSSTUG00000027276	ENSSTUG00000027322	ENSSTUG00000027390	chrnd (ENSSTUG00000027414)	ENSSTUG00000028359	ENSSTUG00000028368	ENSSTUG00000028392	vipr2 (ENSSTUG00000028447)	ENSSTUG00000028456	ENSSTUG00000028471	msl2b (ENSSTUG00000028480)	tnfsf10 (ENSSTUG00000028520)	nceh1b.1 (ENSSTUG00000028533)
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00940000160853.e	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00390000000076.z.a	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.wd.a.a #28	ENSGT00950000183163.b.m	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00940000160853.e	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00390000000076.z.a	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d #22	ENSGT00940000159370.e.b #29	ENSGT00390000008256.vd.b.b #28	ENSGT00950000183163.b.m	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a
Chinook salmon	MODERN SPECIES	7	ENSOTSG00005016181	tfr1b (ENSOTSG00005016184)	ENSOTSG00005016185	adipoqa (ENSOTSG00005016197)	and1 (ENSOTSG00005016217)	cops9 (ENSOTSG00005016218)	otos (ENSOTSG00005016219)	ENSOTSG00005016220	ENSOTSG00005016222	ENSOTSG00005016225	eif2s3 (ENSOTSG00005016226)	klhl15 (ENSOTSG00005016232)	apoob (ENSOTSG00005016238)	sat1b (ENSOTSG00005016249)	ACOT9 (ENSOTSG00005016271)	pdha1b (ENSOTSG00005016793) #22	RPS6KA3 (ENSOTSG00005019066) #29	ENSOTSG00005019067 #28	ENSOTSG00005019068	ENSOTSG00005019072	ENSOTSG00005019074	chrnd (ENSOTSG00005019075)	ENSOTSG00005019077	GABRR3 (ENSOTSG00005019078)	ENSOTSG00005019079	ENSOTSG00005019130	vipr2 (ENSOTSG00005024886)	ENSOTSG00005024887	ENSOTSG00005024888	msl2b (ENSOTSG00005024890)	tnfsf10 (ENSOTSG00005024891)
Coho salmon	MODERN SPECIES	9	tfr1b (ENSOKIG00005014790)	ENSOKIG00005014768	adipoqa (ENSOKIG00005014752)	and1 (ENSOKIG00005014746)	cops9 (ENSOKIG00005014741)	otos (ENSOKIG00005014736)	ENSOKIG00005014713	ENSOKIG00005014705	ENSOKIG00005050559	ENSOKIG00005050554	eif2s3 (ENSOKIG00005050547)	klhl15 (ENSOKIG00005050539)	apoob (ENSOKIG00005050531)	SAT1 (ENSOKIG00005050527)	ACOT9 (ENSOKIG00005050519)	pdha1b (ENSOKIG00005050506) #22	ENSOKIG00005050483 #29	ENSOKIG00005050464 #28	ENSOKIG00005050459	ENSOKIG00005050376	ENSOKIG00005050350	chrnd (ENSOKIG00005050327)	ENSOKIG00005050316	ENSOKIG00005050314	ENSOKIG00005050304	ENSOKIG00005050289	ENSOKIG00005050148	ENSOKIG00005050062	ENSOKIG00005050060	ENSOKIG00005050058	msl2b (ENSOKIG00005050054)
Rainbow trout	MODERN SPECIES	2	tfr1b (ENSOMYG00000040258)	ENSOMYG00000062378	adipoqa (ENSOMYG00000065861)	and1 (ENSOMYG00000040291)	cops9 (ENSOMYG00000040301)	otos (ENSOMYG00000064635)	ENSOMYG00000040343	ENSOMYG00000040369	ENSOMYG00000040380	ENSOMYG00000040401	ENSOMYG00000040430	KLHL15 (ENSOMYG00000040457)	apoob (ENSOMYG00000040468)	SAT1 (ENSOMYG00000040494)	ACOT9 (ENSOMYG00000040549)	ENSOMYG00000040609 #22	RPS6KA3 (ENSOMYG00000069271) #29	ENSOMYG00000064201	ENSOMYG00000003253 #28	ENSOMYG00000065908	ENSOMYG00000003440	ENSOMYG00000003551	ENSOMYG00000065848	ENSOMYG00000003625	ENSOMYG00000003147	ENSOMYG00000003772	ENSOMYG00000003822	ENSOMYG00000064129	ENSOMYG00000003921	ENSOMYG00000053682	ENSOMYG00000004003
Huchen	MODERN SPECIES	2053	and1 (ENSHHUG00000002348)	ENSHHUG00000002334	otos (ENSHHUG00000002312)	ENSHHUG00000002213	ENSHHUG00000002205	ENSHHUG00000002192	ENSHHUG00000002175	ENSHHUG00000002156	ENSHHUG00000002147	eif2s3 (ENSHHUG00000002083)	klhl15 (ENSHHUG00000002049)	apoob (ENSHHUG00000001975)	sat1b (ENSHHUG00000001955)	ACOT9 (ENSHHUG00000001897)	ENSHHUG00000001827	pdha1b (ENSHHUG00000001518) #22
Northern pike	MODERN SPECIES	20	tfr1b (ENSELUG00000013175)	TNK2 (ENSELUG00000013145)	ENSELUG00000013115	and1 (ENSELUG00000013102)	cops9 (ENSELUG00000013075)	otos (ENSELUG00000013059)	apodb (ENSELUG00000013046)	ENSELUG00000033979	ENSELUG00000012949	ENSELUG00000012983	eif2s3 (ENSELUG00000012926)	klhl15 (ENSELUG00000012872)	apoob (ENSELUG00000012820)	sat1b (ENSELUG00000012698)	acot9.2 (ENSELUG00000012671)	pdha1b (ENSELUG00000012632) #22	RPS6KA3 (ENSELUG00000012539) #29	EIF1AX (ENSELUG00000012432) #28	ENSELUG00000012313	ENSELUG00000012285	si:ch73-264p11.1 (ENSELUG00000026366)	cip2a (ENSELUG00000012252)	chrnd (ENSELUG00000012182)	ENSELUG00000034588	ENSELUG00000028231	ENSELUG00000012065	GABRR3 (ENSELUG00000012038)	ENSELUG00000028463	ENSELUG00000011899	vipr2 (ENSELUG00000011832)	ENSELUG00000011815
Osteoglossocephalai	ANCESTRAL SPECIES	99	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00440000034309	ENSGT01050000244868	ENSGT00940000164731	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370 #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00530000063174.a.k #22
Clupeocephala	ANCESTRAL SPECIES	207	ENSGT00940000164731	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k #22	ENSGT00390000014424	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370 #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b
Otomorpha	ANCESTRAL SPECIES	107	ENSGT00390000017765.a	ENSGT00940000156043	ENSGT00390000014424	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT00940000156558.a.b	ENSGT00940000165845.c.b	ENSGT00940000154826	ENSGT00940000155717	ENSGT00940000164731.k	ENSGT00940000167353	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370.c #29	ENSGT00940000159370.d #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000177567	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b	ENSGT01030000234590.B.a.a.e.a	ENSGT00940000153916.A.a	ENSGT00940000165992.a.b
Clupeiformes	ANCESTRAL SPECIES	143	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT00550000074787.c.b	ENSGT00940000156558.a.b	ENSGT01010000225766	ENSGT00940000165845.c.b	ENSGT00940000154826	ENSGT00940000155717	ENSGT01050000244868.f	ENSGT00940000164731.k	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370.d.a.b #29	ENSGT00390000008256 #28	ENSGT00950000182941.b.b.b.b #26	ENSGT00950000183163.b	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000177567	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b.b	ENSGT00930000151482	ENSGT00940000169096	ENSGT00550000074980
Denticle herring	MODERN SPECIES	16	gtf3aa (ENSDCDG00000023792)	ENSDCDG00000023796	atp6v1aa (ENSDCDG00000023799)	zdhhc23a (ENSDCDG00000023818)	ENSDCDG00000023820	ENSDCDG00000023821	ENSDCDG00000023822	ENSDCDG00000023823	cst14b.1 (ENSDCDG00000023824)	ENSDCDG00000023825	ENSDCDG00000023827	apooa (ENSDCDG00000023829)	sat1a.2 (ENSDCDG00000023833)	sat1a.1 (ENSDCDG00000023836)	prdx4 (ENSDCDG00000023839)	pdha1a (ENSDCDG00000023848) #22	ENSDCDG00000024155 #29	ENSDCDG00000031047 #28	map7d2a (ENSDCDG00000031055) #26	ENSDCDG00000031057	si:ch211-114c12.2 (ENSDCDG00000031061)	mrps31 (ENSDCDG00000031065)	slc25a15b (ENSDCDG00000031070)	si:dkey-183i3.5 (ENSDCDG00000031073)	ENSDCDG00000031076	ENSDCDG00000031106	zw10 (ENSDCDG00000031148)	USP28 (ENSDCDG00000031265)	HTR3B (ENSDCDG00000033021)	HTR3A (ENSDCDG00000033024)	aifm1 (ENSDCDG00000033068)
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000007330	ENSCHAG00000007321	SLC34A1 (ENSCHAG00000007122)	adra2db (ENSCHAG00000007110)	ENSCHAG00000007099	cnot6a (ENSCHAG00000007040)	ADAMTS2 (ENSCHAG00000006225)	ENSCHAG00000006187	ENSCHAG00000006174	ENSCHAG00000006157	ENSCHAG00000006152	apooa (ENSCHAG00000006136)	sat1a.2 (ENSCHAG00000006105)	prdx4 (ENSCHAG00000005932)	ENSCHAG00000005907	pdha1a (ENSCHAG00000005694) #22	ENSCHAG00000004050 #29	ENSCHAG00000004006	ENSCHAG00000003952	mrps31 (ENSCHAG00000003907)	slc25a15b (ENSCHAG00000003887)	si:dkey-183i3.5 (ENSCHAG00000003822)
Otophysi	ANCESTRAL SPECIES	264						ENSGT00550000074787.c.b	ENSGT00940000156558.a.b	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT00940000164731.k	ENSGT00940000167353	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370.c #29	ENSGT00390000008256.rd.b #28	ENSGT00950000182941.b.b.b.a #26	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b	ENSGT01030000234590.B.a.a.e.a	ENSGT00940000153916.A.a	ENSGT00940000165992.a.b	ENSGT00940000153783.b.a.a.b	ENSGT00940000156309.B.g
Characiphysae	ANCESTRAL SPECIES	128			ENSGT00940000165297.k.a	ENSGT00390000005492.d	ENSGT00550000074787.c.b	ENSGT00940000156558.a.b	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT00940000164731.k	ENSGT00940000167353	ENSGT00510000048637	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000177567	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b	ENSGT01030000234590.B.a.a.e.a	ENSGT00990000208422	ENSGT00940000165992.a.b	ENSGT00940000153783.b.a.a.b	ENSGT00940000156309.B.g	ENSGT00940000165351	ENSGT00530000063882.b	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00390000004049.b	ENSGT00950000183153.c.a.q
Channel catfish	MODERN SPECIES	20	naa38 (ENSIPUG00000021657)	ENSIPUG00000021644	ENSIPUG00000021590	cldn15b (ENSIPUG00000021558)	ENSIPUG00000021547	rangrf (ENSIPUG00000021519)	slc25a35 (ENSIPUG00000021498)	capga (ENSIPUG00000021457)	tp53 (ENSIPUG00000021439)	gps2 (ENSIPUG00000021426)	Gabarap (ENSIPUG00000021410)	ctdnep1a (ENSIPUG00000021393)	senp3a (ENSIPUG00000021384)	ENSIPUG00000021379	Prdx4 (ENSIPUG00000021353)	pdha1a (ENSIPUG00000021329) #22	ENSIPUG00000021265 #29	EIF1AX (ENSIPUG00000021259) #28	ENSIPUG00000021255	si:ch211-114c12.2 (ENSIPUG00000021246)	MRPS31 (ENSIPUG00000021226)	SLC25A15 (ENSIPUG00000021205)	tm4sf21a (ENSIPUG00000021197)	ENSIPUG00000021192	srrt (ENSIPUG00000021150)	zdhhc23a (ENSIPUG00000021146)	ENSIPUG00000021142	zfx (ENSIPUG00000021113)	ENSIPUG00000021105	ENSIPUG00000021096	ApoO (ENSIPUG00000021059)
Characiphysae_b	ANCESTRAL SPECIES	165			ENSGT00940000165297.k.a	ENSGT00390000005492.d	ENSGT00550000074787.c.b	ENSGT00940000156558.a.b	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT00940000164731.k	ENSGT00940000167353	ENSGT00510000048637	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000177567	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b	ENSGT01030000234590.B.a.a.e.a	ENSGT00990000208422	ENSGT00940000165992.a.b	ENSGT00940000153783.b.a.a.b	ENSGT00940000156309.B.g	ENSGT00940000157496	ENSGT00390000004049.a	ENSGT00950000183153.c.a.q	ENSGT00940000163587.a.b.b.e.a
Characoidei	ANCESTRAL SPECIES	365										ENSGT00940000164731.k	ENSGT00940000167353	ENSGT00510000048637	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22
Mexicana tetra	MODERN SPECIES	1211										ENSAMXG00000016286	ENSAMXG00000006887	CXorf58 (ENSAMXG00000031028)	apooa (ENSAMXG00000006877)	sat1a.2 (ENSAMXG00000038246)	prdx4 (ENSAMXG00000037570)	pdha1a (ENSAMXG00000035787) #22	ENSAMXG00000029608 #29	ENSAMXG00000041269 #29	eif1axa (ENSAMXG00000031325) #28	ENSAMXG00000038528
Red-bellied piranha	MODERN SPECIES	1016								ENSPNAG00000018328	cst14b.1 (ENSPNAG00000018311)	zgc:153704 (ENSPNAG00000018300)	ENSPNAG00000018278	ENSPNAG00000018257	apooa (ENSPNAG00000018196)	sat1a.2 (ENSPNAG00000018180)	prdx4 (ENSPNAG00000018126)	ENSPNAG00000017713 #22	ENSPNAG00000017652 #29	ENSPNAG00000017636 #29	sox19a (ENSPNAG00000017605)
Electric eel	MODERN SPECIES	29				ENSEEEG00000020331	srrt (ENSEEEG00000020326)	atp6v1aa (ENSEEEG00000020323)	zdhhc23a (ENSEEEG00000020322)	ENSEEEG00000020321	CSTB (ENSEEEG00000020320)	ENSEEEG00000020319	ENSEEEG00000020318	apooa (ENSEEEG00000020316)	sat1a.2 (ENSEEEG00000020308)	sat1a.1 (ENSEEEG00000020302)	prdx4 (ENSEEEG00000020254)	pdha1a (ENSEEEG00000020228) #22	ENSEEEG00000017549 #29	ENSEEEG00000017382 #28	ENSEEEG00000017379	si:ch211-114c12.2 (ENSEEEG00000017377)	mrps31 (ENSEEEG00000017376)	slc25a15b (ENSEEEG00000017375)	tm4sf21a (ENSEEEG00000017374)	ENSEEEG00000017372	sox19a (ENSEEEG00000017371)	eif4a1b (ENSEEEG00000016231)	senp3a (ENSEEEG00000016211)	plscr3a (ENSEEEG00000016210)	phf23a (ENSEEEG00000016207)	ctdnep1a (ENSEEEG00000016202)	gabarapa (ENSEEEG00000016196)
Cyprinoidei	ANCESTRAL SPECIES	16																ENSGT00530000063174.a.l #22	ENSGT00940000159370.c #29	ENSGT00390000008256.rd.b #28	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000156837	ENSGT00950000182858.A.b.b.g.b.s.a	ENSGT00950000182858.A.b.b.g.b.s.b	ENSGT00950000182858.A.b.b.g.b.t	ENSGT00940000158347.y	ENSGT00940000159451	ENSGT01050000244864.B.a.f	ENSGT01030000234513.B.a.d	ENSGT01030000235048	ENSGT00940000153669.a	ENSGT00940000163054.h	ENSGT00940000159074.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	31	ENSGT00940000165351.j.d.a	ENSGT00940000156309.B.g.b	ENSGT00940000153783.b.a.a.b.d	ENSGT00940000165992.a.b.a	ENSGT00940000153916.A.a.b	ENSGT01030000234590.B.a.a.e.a.c	ENSGT00730000110966.a.b.d.a	ENSGT00390000010017.o	ENSGT00410000026585.d	ENSGT00940000159305.cb.a	ENSGT00940000163587.a.b.b.e.a.a	ENSGT00950000183153.c.a.q.a	ENSGT00390000004049.b.a.a	ENSGT00940000166995.h.a	ENSGT01040000240503.B.i.a	ENSGT00530000063174.a.l.a #22	ENSGT00940000159370.c.a #29	ENSGT00940000156837.n	ENSGT00950000182858.A.b.b.g.b.s.b.c	ENSGT00950000182858.A.b.b.g.b.t.a.a.a	ENSGT00950000182858.A.b.b.g.b.t.a.b.a	ENSGT00940000158347.y.a	ENSGT00940000159451.g	ENSGT01050000244864.B.a.f.c	ENSGT01030000234513.B.a.d.c	ENSGT00940000153669.a.t	ENSGT00940000163054.h.a	ENSGT00940000159074.f.d	ENSGT00390000012084.d	ENSGT00940000157427.i.a	ENSGT00950000182972.a.a.a.a.a.f.h
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000165351.j.d.b	ENSGT00940000156309.B.g.b	ENSGT00940000153783.b.a.a.b.d	ENSGT00940000165992.a.b.a	ENSGT00940000153916.A.a.b	ENSGT01030000234590.B.a.a.e.a.c	ENSGT00730000110966.a.b.d.a	ENSGT00390000010017.o	ENSGT00410000026585.d	ENSGT00940000159305.cb.a	ENSGT00940000163587.a.b.b.e.a.a	ENSGT00950000183153.c.a.q.a	ENSGT00390000004049.b.a.a	ENSGT00940000166995.h.a	ENSGT01040000240503.B.i.a	ENSGT00530000063174.a.l.a #22	ENSGT00940000159370.c.a #29	ENSGT00950000182941.b.b.b.a.b #26	ENSGT00940000156837.n	ENSGT00950000182858.A.b.b.g.b.s.b.c	ENSGT00950000182858.A.b.b.g.b.t.a.a.a	ENSGT00950000182858.A.b.b.g.b.t.a.b.a	ENSGT00940000158347.y.a	ENSGT00940000159451.g	ENSGT01050000244864.B.a.f.c	ENSGT01030000234513.B.a.d.c	ENSGT00940000153669.a.t	ENSGT00940000163054.h.a	ENSGT00940000159074.f.d	ENSGT00390000012084.d	ENSGT00940000157427.i.a
Common carp reference	MODERN SPECIES	7	atp6v1aa (ENSCCRG00000060472)	phf23a (ENSCCRG00000081493)	senp3a (ENSCCRG00000008757)	eif4a1b (ENSCCRG00000008761)	sox19a (ENSCCRG00000008769)	tm4sf21a (ENSCCRG00000068539)	slc25a15b (ENSCCRG00000008772)	mrps31 (ENSCCRG00000001215)	si:ch211-114c12.2 (ENSCCRG00000001213)	capga (ENSCCRG00000001210)	ENSCCRG00000074202	tp53 (ENSCCRG00000001205)	gps2 (ENSCCRG00000076263)	gabarapa (ENSCCRG00000018047)	ctdnep1a (ENSCCRG00000031327)	pdha1a (ENSCCRG00000055865) #22	rps6ka3a (ENSCCRG00000082011) #29	map7d2a (ENSCCRG00000010881) #26	ercc6l (ENSCCRG00000080390)	ENSCCRG00000065055	ENSCCRG00000069365	tbc1d8b (ENSCCRG00000010618)	gja2 (ENSCCRG00000064982)	gjb1a (ENSCCRG00000054126)	mtmr2 (ENSCCRG00000009032)	kat5a (ENSCCRG00000008106)	fam76b (ENSCCRG00000008306)	cwc15 (ENSCCRG00000035615)	acsl4b (ENSCCRG00000035626)	stag2a (ENSCCRG00000040688)	gria3a (ENSCCRG00000037188)
Golden-line barbel	MODERN SPECIES	151	phf23a (ENSSGRG00000040074)	plscr3a (ENSSGRG00000040072)	senp3a (ENSSGRG00000037764)	sox19a (ENSSGRG00000037733)	mpdu1a (ENSSGRG00000037703)	tm4sf21a (ENSSGRG00000037696)	ENSSGRG00000037695	mrps31 (ENSSGRG00000037694)	si:ch211-114c12.2 (ENSSGRG00000037693)	capga (ENSSGRG00000037692)	ENSSGRG00000037691	tp53 (ENSSGRG00000037660)	gps2 (ENSSGRG00000037649)	gabarapa (ENSSGRG00000037617)	ctdnep1a (ENSSGRG00000037519)	pdha1a (ENSSGRG00000037501) #22	rps6ka3a (ENSSGRG00000032538) #29	ENSSGRG00000032390 #28	map7d2a (ENSSGRG00000032389) #26	ercc6l (ENSSGRG00000032386)	GBGT1 (ENSSGRG00000032376)	ENSSGRG00000032374	ENSSGRG00000032366	rnf128a (ENSSGRG00000032363)	tbc1d8b (ENSSGRG00000032271)	gja2 (ENSSGRG00000032269)	gjb1a (ENSSGRG00000032267)	mtmr2 (ENSSGRG00000032191)	kat5a (ENSSGRG00000032189)	fam76b (ENSSGRG00000032091)	cwc15 (ENSSGRG00000032068)
Goldfish	MODERN SPECIES	3271	senp3a (ENSCARG00000068290)	eif4a1b (ENSCARG00000068329)	sox19a (ENSCARG00000068402)	tm4sf21a (ENSCARG00000068415)	slc25a15b (ENSCARG00000068423)	mrps31 (ENSCARG00000068429)	si:ch211-114c12.2 (ENSCARG00000068445)	capga (ENSCARG00000068454)	ENSCARG00000068479	tp53 (ENSCARG00000068521)	gps2 (ENSCARG00000068609)	ENSCARG00000068652	gabarapa (ENSCARG00000068660)	ENSCARG00000068676	ctdnep1a (ENSCARG00000068690)	pdha1a (ENSCARG00000068738) #22	rps6ka3a (ENSCARG00000068842) #29	ercc6l (ENSCARG00000068896)	GBGT1 (ENSCARG00000068903)	ENSCARG00000068912	ENSCARG00000068913	ENSCARG00000068917	rnf128a (ENSCARG00000068923)	tbc1d8b (ENSCARG00000068950)	gja2 (ENSCARG00000069064)	gjb1a (ENSCARG00000069065)	ENSCARG00000069067	mtmr2 (ENSCARG00000069127)	kat5a (ENSCARG00000069312)	fam76b (ENSCARG00000069440)	cwc15 (ENSCARG00000069464)
Cyprininae	ANCESTRAL SPECIES	50			ENSGT00940000153783.b.a.a.b.c	ENSGT00940000165992.a.b.b	ENSGT00940000153916.A.a.a	ENSGT01030000234590.B.a.a.e.a.d	ENSGT00730000110966.a.b.d.b	ENSGT00390000010017.p	ENSGT00410000026585.c	ENSGT00940000159305.cb.b	ENSGT00940000163587.a.b.b.e.a.b	ENSGT00950000183153.c.a.q.b	ENSGT00390000004049.b.a.b	ENSGT00940000166995.h.b	ENSGT01040000240503.B.i.b	ENSGT00530000063174.a.l.b #22	ENSGT00940000159370.c.b #29	ENSGT00390000008256.rd.b #28	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000156837.m	ENSGT00940000158869.p	ENSGT00950000182858.A.b.b.g.b.s.a	ENSGT00950000182858.A.b.b.g.b.s.b.d	ENSGT00950000182858.A.b.b.g.b.t.a.a.b	ENSGT00950000182858.A.b.b.g.b.t.a.b.b	ENSGT00940000158347.y.b	ENSGT00940000159451.h	ENSGT01050000244864.B.a.f.d	ENSGT01030000234513.B.a.d.d	ENSGT01030000235048	ENSGT00940000153669.a.s
Cyprininae_a	ANCESTRAL SPECIES	42	ENSGT00940000165351.j.d.a	ENSGT00940000156309.B.g.a	ENSGT00940000153783.b.a.a.b.c	ENSGT00940000165992.a.b.b	ENSGT00940000153916.A.a.a	ENSGT01030000234590.B.a.a.e.a.d	ENSGT00730000110966.a.b.d.b	ENSGT00390000010017.p	ENSGT00410000026585.c	ENSGT00940000159305.cb.b	ENSGT00940000163587.a.b.b.e.a.b	ENSGT00950000183153.c.a.q.b	ENSGT00390000004049.b.a.b	ENSGT00940000166995.h.b	ENSGT01040000240503.B.i.b	ENSGT00530000063174.a.l.b #22	ENSGT00940000159370.c.b #29	ENSGT00390000008256.rd.b #28	ENSGT00950000182941.b.b.b.a.a #26	ENSGT00940000156837.m	ENSGT00940000158869.p	ENSGT00950000182858.A.b.b.g.b.s.a	ENSGT00950000182858.A.b.b.g.b.s.b.d	ENSGT00950000182858.A.b.b.g.b.t.a.a.b	ENSGT00950000182858.A.b.b.g.b.t.a.b.b	ENSGT00940000158347.y.b	ENSGT00940000159451.h	ENSGT01050000244864.B.a.f.d	ENSGT01030000234513.B.a.d.d	ENSGT00940000153669.a.s	ENSGT00940000163054.h.b
Golden-line barbel	MODERN SPECIES	274	phf23a (ENSSGRG00000030397)	plscr3a (ENSSGRG00000030402)	senp3a (ENSSGRG00000030408)	sox19a (ENSSGRG00000030881)	mpdu1a (ENSSGRG00000030885)	tm4sf21a (ENSSGRG00000030894)	slc25a15b (ENSSGRG00000030895)	mrps31 (ENSSGRG00000030896)	si:ch211-114c12.2 (ENSSGRG00000030897)	capga (ENSSGRG00000030898)	ENSSGRG00000030903	tp53 (ENSSGRG00000030904)	gps2 (ENSSGRG00000030937)	gabarapa (ENSSGRG00000030939)	ctdnep1a (ENSSGRG00000031006)	pdha1a (ENSSGRG00000031040) #22	rps6ka3a (ENSSGRG00000031850) #29	ENSSGRG00000036591 #28	map7d2a (ENSSGRG00000036802) #26	ercc6l (ENSSGRG00000036804)	ENSSGRG00000036805	gbgt1l3 (ENSSGRG00000036806)	ENSSGRG00000036808
Common carp reference	MODERN SPECIES	15	atp6v1aa (ENSCCRG00000056788)	phf23a (ENSCCRG00000001364)	senp3a (ENSCCRG00000001271)	eif4a1b (ENSCCRG00000063140)	sox19a (ENSCCRG00000055009)	mpdu1a (ENSCCRG00000001247)	slc25a15b (ENSCCRG00000061865)	tm4sf21a (ENSCCRG00000008770)	mrps31 (ENSCCRG00000034729)	si:ch211-114c12.2 (ENSCCRG00000001229)	capga (ENSCCRG00000031314)	tp53 (ENSCCRG00000031304)	gps2 (ENSCCRG00000015767)	gabarapa (ENSCCRG00000015760)	ctdnep1a (ENSCCRG00000015754)	pdha1a (ENSCCRG00000076428) #22	rps6ka3a (ENSCCRG00000065673) #29	ENSCCRG00000000112 #28	map7d2a (ENSCCRG00000082337) #26	ercc6l (ENSCCRG00000015774)	ENSCCRG00000021146	gbgt1l8 (ENSCCRG00000072023)	ENSCCRG00000010853	ENSCCRG00000010846	ENSCCRG00000055249	rnf128a (ENSCCRG00000010804)	tbc1d8b (ENSCCRG00000010644)	gja2 (ENSCCRG00000068861)	gjb1a (ENSCCRG00000068166)	kat5a (ENSCCRG00000008797)	mtmr2 (ENSCCRG00000007955)
Goldfish	MODERN SPECIES	23	ENSCARG00000041454	ENSCARG00000041779	eif4a1b (ENSCARG00000041796)	sox19a (ENSCARG00000041817)	mpdu1a (ENSCARG00000041832)	tm4sf21a (ENSCARG00000041862)	slc25a15b (ENSCARG00000041946)	mrps31 (ENSCARG00000041960)	si:ch211-114c12.2 (ENSCARG00000041975)	ENSCARG00000041999	capga (ENSCARG00000042009)	tp53 (ENSCARG00000042080)	ENSCARG00000042119	gps2 (ENSCARG00000042155)	ctdnep1a (ENSCARG00000042305)	pdha1a (ENSCARG00000042409) #22	rps6ka3a (ENSCARG00000044086) #29	ENSCARG00000044663 #28	ercc6l (ENSCARG00000044807)	ENSCARG00000044816	ENSCARG00000044825	ENSCARG00000045057	ENSCARG00000045138	ENSCARG00000045167	rnf128a (ENSCARG00000045180)	tbc1d8b (ENSCARG00000045196)	gja2 (ENSCARG00000045292)	gjb1a (ENSCARG00000045300)	ENSCARG00000045310	mtmr2 (ENSCARG00000045352)	kat5a (ENSCARG00000045718)
Zebrafish	MODERN SPECIES	20	plscr3a (ENSDARG00000093078)	senp3a (ENSDARG00000095538)	eif4a1b (ENSDARG00000003032)	sox19a (ENSDARG00000010770)	mpdu1a (ENSDARG00000035562)	tm4sf21a (ENSDARG00000057706)	slc25a15b (ENSDARG00000062271)	mrps31 (ENSDARG00000057855)	si:ch211-114c12.2 (ENSDARG00000028542)	capga (ENSDARG00000035560)	ENSDARG00000092931	tp53 (ENSDARG00000035559)	gps2 (ENSDARG00000035558)	gabarapa (ENSDARG00000035557)	ctdnep1a (ENSDARG00000016519)	pdha1a (ENSDARG00000012387) #22	rps6ka3a (ENSDARG00000035556) #29	eif1axa (ENSDARG00000029003) #28	ENSDARG00000112810	map7d2a (ENSDARG00000068480) #26	ercc6l (ENSDARG00000002479)	ENSDARG00000062221	ENSDARG00000091969	gbgt1l3 (ENSDARG00000035555)	GBGT1 (ENSDARG00000091936)	ENSDARG00000093509	gbgt1l4 (ENSDARG00000068503)	gbgt1l8 (ENSDARG00000091944)	gbgt1l2 (ENSDARG00000092718)	ENSDARG00000011283	gbgt1l1 (ENSDARG00000025275)
Euteleosteomorpha	ANCESTRAL SPECIES	174				ENSGT00550000074787.d.a.b	ENSGT00940000156558.a.b	ENSGT01050000244868.c.b	ENSGT00940000164731	ENSGT00940000167353	ENSGT00390000014424	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000177567	ENSGT00410000026585	ENSGT00940000176119	ENSGT00940000156285	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028	ENSGT00390000004986	ENSGT00940000155053.c.b	ENSGT00940000160633.a.b	ENSGT00940000156040.f	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT01100000263599
Acanthomorphata	ANCESTRAL SPECIES	150	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000177567	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.f	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b	ENSGT00940000158617
Euacanthomorphacea	ANCESTRAL SPECIES	20	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000177567	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000178850	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	5	hist2h2l (ENSMMDG00005016116)	ENSMMDG00005016115	hyou1 (ENSMMDG00005010272)	katnal2 (ENSMMDG00005010214)	ENSMMDG00005010212	ENSMMDG00005010211	ENSMMDG00005010210	ENSMMDG00005010208	ENSMMDG00005010207	ENSMMDG00005010202	ENSMMDG00005010199	pcyt1bb (ENSMMDG00005010196)	lipia (ENSMMDG00005010193)	si:ch211-114c12.2 (ENSMMDG00005010190)	ENSMMDG00005010189	pdha1a (ENSMMDG00005008199) #22	pdha1a (ENSMMDG00005008006) #22	prdx4 (ENSMMDG00005007963)	sat1a.2 (ENSMMDG00005007960)	ENSMMDG00005007955	zgc:153704 (ENSMMDG00005007943)	zdhhc23a (ENSMMDG00005007940)	ATP6V1A (ENSMMDG00005007605)	ENSMMDG00005007578	ENSMMDG00005007573	ENSMMDG00005007570	b4galt4 (ENSMMDG00005007567)	CASR (ENSMMDG00005007564)	zgc:175280 (ENSMMDG00005007489)	kif20a (ENSMMDG00005007483)	cdc23 (ENSMMDG00005007473)
Pinecone sodierfish	MODERN SPECIES	5	ENSMMDG00005016115	hyou1 (ENSMMDG00005010272)	katnal2 (ENSMMDG00005010214)	ENSMMDG00005010212	ENSMMDG00005010211	ENSMMDG00005010210	ENSMMDG00005010208	ENSMMDG00005010207	ENSMMDG00005010202	ENSMMDG00005010199	pcyt1bb (ENSMMDG00005010196)	lipia (ENSMMDG00005010193)	si:ch211-114c12.2 (ENSMMDG00005010190)	ENSMMDG00005010189	pdha1a (ENSMMDG00005008199) #22	pdha1a (ENSMMDG00005008006) #22	prdx4 (ENSMMDG00005007963)	sat1a.2 (ENSMMDG00005007960)	ENSMMDG00005007955	zgc:153704 (ENSMMDG00005007943)	zdhhc23a (ENSMMDG00005007940)	ATP6V1A (ENSMMDG00005007605)	ENSMMDG00005007578	ENSMMDG00005007573	ENSMMDG00005007570	b4galt4 (ENSMMDG00005007567)	CASR (ENSMMDG00005007564)	zgc:175280 (ENSMMDG00005007489)	kif20a (ENSMMDG00005007483)	cdc23 (ENSMMDG00005007473)	ENSMMDG00005007468
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00940000177567	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000178850	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Ballan wrasse	MODERN SPECIES	56	ENSLBEG00000004460	sms (ENSLBEG00000004400) #36	ENSLBEG00000004370	gabrr3a (ENSLBEG00000004339)	ENSLBEG00000004300	ENSLBEG00000004272	ENSLBEG00000004256	ENSLBEG00000004246	ENSLBEG00000004191	ENSLBEG00000004137	pcyt1bb (ENSLBEG00000004091)	lipia (ENSLBEG00000004058)	ENSLBEG00000004042	ENSLBEG00000004018	map7d2a (ENSLBEG00000003963) #26	pdha1a (ENSLBEG00000003915) #22	prdx4 (ENSLBEG00000003897)	sat1a.2 (ENSLBEG00000003879)	ENSLBEG00000003858	zgc:153704 (ENSLBEG00000003768)	ZDHHC23 (ENSLBEG00000003742)	ATP6V1A (ENSLBEG00000003686)	ENSLBEG00000003642	gsx1 (ENSLBEG00000003628)	ENSLBEG00000003615	b4galt4 (ENSLBEG00000003593)	CASR (ENSLBEG00000003570)	zgc:175280 (ENSLBEG00000003521)	kif20a (ENSLBEG00000003479)	cdc23 (ENSLBEG00000003397)	ENSLBEG00000003363
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Perciformes	ANCESTRAL SPECIES	22	ENSGT00940000157181	ENSGT00390000016213	ENSGT00390000006852.A	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000157181	ENSGT00390000016213	ENSGT00390000006852.A	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b	ENSGT00940000154622.a.b.m	ENSGT00940000158617
Lumpfish	MODERN SPECIES	5	nfrkb (ENSCLMG00005015781)	ENSCLMG00005015767	sms (ENSCLMG00005015760) #36	ENSCLMG00005015745	gabrr3a (ENSCLMG00005015742)	ENSCLMG00005015740	ENSCLMG00005015739	ENSCLMG00005015738	ENSCLMG00005015735	ENSCLMG00005015734	ENSCLMG00005015733	ENSCLMG00005015731	lipia (ENSCLMG00005015728)	si:ch211-114c12.2 (ENSCLMG00005015727)	ENSCLMG00005015723 #26	pdha1a (ENSCLMG00005014774) #22	prdx4 (ENSCLMG00005014737)	ENSCLMG00005014736	ENSCLMG00005014735	zgc:153704 (ENSCLMG00005014733)	zdhhc23a (ENSCLMG00005014732)	ATP6V1A (ENSCLMG00005014731)	ENSCLMG00005014707	ENSCLMG00005014705	ENSCLMG00005014702	b4galt4 (ENSCLMG00005014701)	CASR (ENSCLMG00005014698)	zgc:175280 (ENSCLMG00005014696)	kif20a (ENSCLMG00005014562)	cdc23 (ENSCLMG00005014416)	ENSCLMG00005014414
Stickleback	MODERN SPECIES	7	nfrkb (ENSGACG00000020662)	RYR1 (ENSGACG00000020663)	ENSGACG00000020664	sms (ENSGACG00000020665) #36	ENSGACG00000020666	gabrr3a (ENSGACG00000020667)	ENSGACG00000020668	ENSGACG00000020669	ENSGACG00000020670	ENSGACG00000020671	pcyt1bb (ENSGACG00000020672)	lipia (ENSGACG00000020673)	ENSGACG00000020674	ENSGACG00000020675	ENSGACG00000020676 #26	pdha1a (ENSGACG00000020677) #22	prdx4 (ENSGACG00000020678)	ENSGACG00000020679	zgc:153704 (ENSGACG00000020680)	zdhhc23a (ENSGACG00000020681)	ATP6V1A (ENSGACG00000020682)	ENSGACG00000020683	ENSGACG00000020684	ENSGACG00000020685	b4galt4 (ENSGACG00000020686)	CASR (ENSGACG00000020687)	zgc:175280 (ENSGACG00000020688)	kif20a (ENSGACG00000020689)	cdc23 (ENSGACG00000020690)	ENSGACG00000020691	ENSGACG00000020692
Perciformes_a	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT00940000157181	ENSGT00390000016213	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Channel bull blenny	MODERN SPECIES	5	tmem45b (ENSCGOG00000003621)	nfrkb (ENSCGOG00000003392)	ENSCGOG00000003381	sms (ENSCGOG00000003324) #36	ENSCGOG00000003312	gabrr3a (ENSCGOG00000003311)	ENSCGOG00000003309	ENSCGOG00000003306	ENSCGOG00000003304	ENSCGOG00000003293	ENSCGOG00000003268	pcyt1bb (ENSCGOG00000003215)	lipia (ENSCGOG00000003125)	si:ch211-114c12.2 (ENSCGOG00000003117)	map7d2a (ENSCGOG00000003114) #26	pdha1a (ENSCGOG00000002172) #22	prdx4 (ENSCGOG00000001975)	sat1a.2 (ENSCGOG00000001948)	ENSCGOG00000001943	zgc:153704 (ENSCGOG00000001941)	ZDHHC23 (ENSCGOG00000001938)	ATP6V1A (ENSCGOG00000001652)	ENSCGOG00000001603	ENSCGOG00000023910	ENSCGOG00000023909	ENSCGOG00000023908	b4galt4 (ENSCGOG00000023906)	CASR (ENSCGOG00000023900)	zgc:175280 (ENSCGOG00000023892)	kif20a (ENSCGOG00000023879)	cdc23 (ENSCGOG00000023850)
Pike perch	MODERN SPECIES	37	tmem45b (ENSSLUG00000005791)	nfrkb (ENSSLUG00000005759)	ENSSLUG00000005699	sms (ENSSLUG00000005578) #36	ENSSLUG00000005531	gabrr3a (ENSSLUG00000005513)	ENSSLUG00000023241	ENSSLUG00000023236	ENSSLUG00000023231	ENSSLUG00000023224	ENSSLUG00000023212	pcyt1bb (ENSSLUG00000023201)	lipia (ENSSLUG00000023169)	si:ch211-114c12.2 (ENSSLUG00000023161)	ENSSLUG00000023154 #26	pdha1a (ENSSLUG00000022834) #22	prdx4 (ENSSLUG00000022735)	sat1a.2 (ENSSLUG00000022712)	ENSSLUG00000022702	zgc:153704 (ENSSLUG00000022651)	zdhhc23a (ENSSLUG00000022640)	ATP6V1A (ENSSLUG00000022635)	ENSSLUG00000022628	ENSSLUG00000022622	ENSSLUG00000022613	b4galt4 (ENSSLUG00000022606)	CASR (ENSSLUG00000022588)	zgc:175280 (ENSSLUG00000022542)	kif20a (ENSSLUG00000022502)	cdc23 (ENSSLUG00000022463)	ENSSLUG00000022451
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b	ENSGT00940000158617
Gilthead seabream	MODERN SPECIES	4	ENSSAUG00010001986	sms (ENSSAUG00010001980) #36	ENSSAUG00010001976	gabrr3a (ENSSAUG00010001963)	ENSSAUG00010001960	ENSSAUG00010001959	ENSSAUG00010001955	ENSSAUG00010001953	ENSSAUG00010001950	ENSSAUG00010001941	pcyt1bb (ENSSAUG00010001939)	lipia (ENSSAUG00010001929)	ENSSAUG00010001924	ENSSAUG00010001921	ENSSAUG00010001915 #26	pdha1a (ENSSAUG00010001900) #22	prdx4 (ENSSAUG00010001878)	sat1a.2 (ENSSAUG00010001871)	ENSSAUG00010001861	zgc:153704 (ENSSAUG00010001857)	ZDHHC23 (ENSSAUG00010001853)	ATP6V1A (ENSSAUG00010001843)	ENSSAUG00010001841	ENSSAUG00010001837	ENSSAUG00010001831	b4galt4 (ENSSAUG00010001823)	CASR (ENSSAUG00010001814)	zgc:175280 (ENSSAUG00010001799)	kif20a (ENSSAUG00010001529)	cdc23 (ENSSAUG00010026651)	ENSSAUG00010026649
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b	ENSGT00940000158617	ENSGT00940000157956.o.b
Large yellow croaker	MODERN SPECIES	493	tmem45b (ENSLCRG00005010928)	nfrkb (ENSLCRG00005010930)	ENSLCRG00005010935	sms (ENSLCRG00005011498) #36	ENSLCRG00005011500	gabrr3a (ENSLCRG00005011505)	ENSLCRG00005011508	PHLDB2 (ENSLCRG00005011509)	ENSLCRG00005011517	ENSLCRG00005011518	ENSLCRG00005011522	pcyt1bb (ENSLCRG00005011549)	lipia (ENSLCRG00005011562)	ENSLCRG00005011608	map7d2a (ENSLCRG00005011610) #26	pdha1a (ENSLCRG00005011617) #22	ska2 (ENSLCRG00005011626)	tiprl (ENSLCRG00005011627)	ENSLCRG00005011631	msx2b (ENSLCRG00005011633)	ENSLCRG00005011634	drd1b (ENSLCRG00005011635)	RAD50 (ENSLCRG00005011645)	ENSLCRG00005011790	ENSLCRG00005011791	pou4f3 (ENSLCRG00005011794)	RBM27 (ENSLCRG00005011797)	PLAC8L1 (ENSLCRG00005012192)	CYP8B1 (ENSLCRG00005012193)	GRXCR2 (ENSLCRG00005012196)	kctd16b (ENSLCRG00005012198)
European seabass	MODERN SPECIES	4	ENSDLAG00005006268	ENSDLAG00005006129	ENSDLAG00005006122 #36	ENSDLAG00005028315	ENSDLAG00005006061	ENSDLAG00005006047	ENSDLAG00005006024	ENSDLAG00005028403	ENSDLAG00005032532	ENSDLAG00005005986	ENSDLAG00005005824	ENSDLAG00005005794	ENSDLAG00005005720	ENSDLAG00005005685	ENSDLAG00005005670 #26	ENSDLAG00005005568 #22	prdx4 (ENSDLAG00005005259)	ENSDLAG00005005233	zgc:153704 (ENSDLAG00005028913)	ENSDLAG00005005216	ENSDLAG00005005203	ENSDLAG00005005190	ENSDLAG00005005170	ENSDLAG00005005146	b4galt4 (ENSDLAG00005005129)	ENSDLAG00005005018	zgc:175280 (ENSDLAG00005004934)	KIF20A (ENSDLAG00005004911)	ENSDLAG00005004746	ENSDLAG00005004720	ENSDLAG00005004684
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT01100000263497.D	ENSGT00940000157181	ENSGT00390000016213	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b	ENSGT00940000154622.a.b.m	ENSGT00940000158617
Fugu	MODERN SPECIES	6	dnajc18 (ENSTRUG00000020734)	tmem45b (ENSTRUG00000016999)	nfrkb (ENSTRUG00000016994)	sms (ENSTRUG00000016950) #36	ENSTRUG00000025738	gabrr3a (ENSTRUG00000016946)	ENSTRUG00000032954	ENSTRUG00000016936	ENSTRUG00000030081	ENSTRUG00000016935	ENSTRUG00000016932	pcyt1bb (ENSTRUG00000016928)	lipia (ENSTRUG00000016924)	ENSTRUG00000025544	ENSTRUG00000024155 #26	pdha1a (ENSTRUG00000016917) #22	prdx4 (ENSTRUG00000016916)	ENSTRUG00000016914	ENSTRUG00000033057	zgc:153704 (ENSTRUG00000016909)	ZDHHC23 (ENSTRUG00000016906)	ATP6V1A (ENSTRUG00000016898)	ENSTRUG00000016893	ENSTRUG00000016892	ENSTRUG00000032078	b4galt4 (ENSTRUG00000016879)	CASR (ENSTRUG00000016870)	zgc:175280 (ENSTRUG00000016862)	kif20a (ENSTRUG00000016852)	cdc23 (ENSTRUG00000016848)	ENSTRUG00000016846
Tetraodon	MODERN SPECIES	22	tmem45b (ENSTNIG00000010009)	nfrkb (ENSTNIG00000010010)	ENSTNIG00000010011	ENSTNIG00000000719	sms (ENSTNIG00000010012) #36	ENSTNIG00000010013	gabrr3a (ENSTNIG00000010014)	ENSTNIG00000000833	ENSTNIG00000010015	ENSTNIG00000010016	ENSTNIG00000010017	pcyt1bb (ENSTNIG00000010018)	lipia (ENSTNIG00000010019)	ENSTNIG00000010020	ENSTNIG00000010021 #26	pdha1a (ENSTNIG00000010022) #22	prdx4 (ENSTNIG00000010023)	ENSTNIG00000010024	zgc:153704 (ENSTNIG00000010025)	zdhhc23a (ENSTNIG00000010026)	ATP6V1A (ENSTNIG00000010027)	ENSTNIG00000010028	ENSTNIG00000000759	ENSTNIG00000010029	ENSTNIG00000010030	b4galt4 (ENSTNIG00000010031)	CASR (ENSTNIG00000010032)	zgc:175280 (ENSTNIG00000010033)	kif20a (ENSTNIG00000010034)	cdc23 (ENSTNIG00000010035)	ENSTNIG00000010036
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Climbing perch	MODERN SPECIES	5	gng8 (ENSATEG00000019698)	ENSATEG00000019685	nfrkb (ENSATEG00000019611)	ENSATEG00000019555	ENSATEG00000019523 #36	ENSATEG00000019493	gabrr3a (ENSATEG00000019371)	ENSATEG00000019343	ENSATEG00000019334	ENSATEG00000019308	ENSATEG00000019278	ENSATEG00000019259	ENSATEG00000019079	ENSATEG00000019015	ENSATEG00000018994	ENSATEG00000018976 #22	prdx4 (ENSATEG00000017856)	sat1a.2 (ENSATEG00000018967)	ENSATEG00000017726	zgc:153704 (ENSATEG00000017711)	ENSATEG00000017690	ENSATEG00000017610	ENSATEG00000017583	ENSATEG00000017572	ENSATEG00000028248	b4galt4 (ENSATEG00000017523)	ENSATEG00000017377	zgc:175280 (ENSATEG00000017297)	KIF20A (ENSATEG00000017266)	ENSATEG00000017213	ENSATEG00000017157
Siamese fighting fish	MODERN SPECIES	5	gng8 (ENSBSLG00000026643)	tmem45b (ENSBSLG00000026642)	nfrkb (ENSBSLG00000026641)	ENSBSLG00000026638	sms (ENSBSLG00000026637) #36	ENSBSLG00000026636	gabrr3a (ENSBSLG00000026635)	ENSBSLG00000026634	ENSBSLG00000026631	ENSBSLG00000026630	ENSBSLG00000026620	pcyt1bb (ENSBSLG00000026617)	lipia (ENSBSLG00000026611)	si:ch211-114c12.2 (ENSBSLG00000026603)	map7d2a (ENSBSLG00000026586) #26	ENSBSLG00000026511 #22	prdx4 (ENSBSLG00000026407)	sat1a.2 (ENSBSLG00000026341)	ENSBSLG00000026302	zgc:153704 (ENSBSLG00000026194)	ZDHHC23 (ENSBSLG00000026161)	atp6v1aa (ENSBSLG00000026089)	ENSBSLG00000026037	gsx1 (ENSBSLG00000025990)	ENSBSLG00000025937	ENSBSLG00000025936	b4galt4 (ENSBSLG00000025935)	CASR (ENSBSLG00000025934)	zgc:175280 (ENSBSLG00000025933)	kif20a (ENSBSLG00000025932)	cdc23 (ENSBSLG00000025929)
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000018131	nfrkb (ENSMAMG00000018113)	ENSMAMG00000018038 #36	ENSMAMG00000018026	gabrr3a (ENSMAMG00000018005)	ENSMAMG00000017989	ENSMAMG00000026403	ENSMAMG00000027839	ENSMAMG00000017953	ENSMAMG00000017881	ENSMAMG00000017868	ENSMAMG00000017828	ENSMAMG00000017816	ENSMAMG00000017809	ENSMAMG00000017796 #26	ENSMAMG00000017764 #22	prdx4 (ENSMAMG00000017739)	sat1a.2 (ENSMAMG00000017726)	ENSMAMG00000017720	zgc:153704 (ENSMAMG00000017708)	ENSMAMG00000017690	ENSMAMG00000017654	ENSMAMG00000017618	ENSMAMG00000017611	ENSMAMG00000026946	b4galt4 (ENSMAMG00000017595)	ENSMAMG00000017580	zgc:175280 (ENSMAMG00000017561)	KIF20A (ENSMAMG00000017548)	ENSMAMG00000017506	ENSMAMG00000026984
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Greater amberjack	MODERN SPECIES	139	RYR1 (ENSSDUG00000005595)	ENSSDUG00000005839	sms (ENSSDUG00000005853) #36	ENSSDUG00000005896	gabrr3a (ENSSDUG00000005971)	ENSSDUG00000006000	ENSSDUG00000006010	ENSSDUG00000006020	ENSSDUG00000006027	ENSSDUG00000006042	ENSSDUG00000006114	pcyt1bb (ENSSDUG00000006146)	lipia (ENSSDUG00000006175)	ENSSDUG00000006197	ENSSDUG00000006220 #26	pdha1a (ENSSDUG00000006245) #22	prdx4 (ENSSDUG00000006312)	sat1a.2 (ENSSDUG00000006376)	ENSSDUG00000006831	zgc:153704 (ENSSDUG00000006853)	zdhhc23a (ENSSDUG00000006861)	ATP6V1A (ENSSDUG00000006881)	ENSSDUG00000006920	ENSSDUG00000006944	ENSSDUG00000006959	b4galt4 (ENSSDUG00000006975)	CASR (ENSSDUG00000006989)	zgc:175280 (ENSSDUG00000007014)	kif20a (ENSSDUG00000007080)	cdc23 (ENSSDUG00000007107)	ENSSDUG00000007156
Yellowtail amberjack	MODERN SPECIES	3035	ENSSLDG00000018814	ENSSLDG00000018831	sms (ENSSLDG00000018844) #36	ENSSLDG00000018877	gabrr3a (ENSSLDG00000018944)	ENSSLDG00000018972	ENSSLDG00000018986	ENSSLDG00000018995	ENSSLDG00000019003	ENSSLDG00000019018	ENSSLDG00000019065	pcyt1bb (ENSSLDG00000019097)	lipia (ENSSLDG00000019132)	si:ch211-114c12.2 (ENSSLDG00000019149)	map7d2a (ENSSLDG00000019166) #26	pdha1a (ENSSLDG00000019215) #22	prdx4 (ENSSLDG00000019265)	sat1a.2 (ENSSLDG00000019305)	ENSSLDG00000019535	zgc:153704 (ENSSLDG00000019547)	zdhhc23a (ENSSLDG00000019570)	ATP6V1A (ENSSLDG00000019592)	ENSSLDG00000019626	gsx1 (ENSSLDG00000019661)	ENSSLDG00000019672	b4galt4 (ENSSLDG00000019681)	CASR (ENSSLDG00000019692)	zgc:175280 (ENSSLDG00000019714)	kif20a (ENSSLDG00000019720)	cdc23 (ENSSLDG00000019752)	ENSSLDG00000019788
Barramundi perch	MODERN SPECIES	94	nfrkb (ENSLCAG00010008508)	sms (ENSLCAG00010008016) #36	ENSLCAG00010007994	gabrr3a (ENSLCAG00010007980)	ENSLCAG00010007967	ENSLCAG00010007965	ENSLCAG00010007960	ENSLCAG00010007955	ENSLCAG00010007946	ENSLCAG00010007774	pcyt1bb (ENSLCAG00010007727)	lipia (ENSLCAG00010007724)	ENSLCAG00010007722	si:ch211-114c12.2 (ENSLCAG00010007718)	ENSLCAG00010007711 #26	pdha1a (ENSLCAG00010007561) #22	prdx4 (ENSLCAG00010007442)	sat1a.2 (ENSLCAG00010007387)	ENSLCAG00010007376	zgc:153704 (ENSLCAG00010007370)	ENSLCAG00010007368	zdhhc23a (ENSLCAG00010007363)	ATP6V1A (ENSLCAG00010007340)	ENSLCAG00010007307	gsx1 (ENSLCAG00010007297)	ENSLCAG00010007293	ENSLCAG00010007289	b4galt4 (ENSLCAG00010007287)	CASR (ENSLCAG00010007265)	zgc:175280 (ENSLCAG00010006873)	kif20a (ENSLCAG00010006765)
Pleuronectoidei	ANCESTRAL SPECIES	23	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Turbot	MODERN SPECIES	16	ENSSMAG00000012089	ENSSMAG00000012095 #36	ENSSMAG00000012121	gabrr3a (ENSSMAG00000012145)	ENSSMAG00000012168	ENSSMAG00000012186	ENSSMAG00000012194	ENSSMAG00000024630	ENSSMAG00000029591	ENSSMAG00000012208	ENSSMAG00000012238	ENSSMAG00000012292	ENSSMAG00000012308	ENSSMAG00000012336	ENSSMAG00000012353 #26	ENSSMAG00000012399 #22	prdx4 (ENSSMAG00000012439)	sat1a.2 (ENSSMAG00000028221)	ENSSMAG00000012476	zgc:153704 (ENSSMAG00000012487)	ENSSMAG00000012496	ENSSMAG00000012526	ENSSMAG00000012555	ENSSMAG00000012630	ENSSMAG00000012641	b4galt4 (ENSSMAG00000012659)	ENSSMAG00000012665	zgc:175280 (ENSSMAG00000012677)	KIF20A (ENSSMAG00000012711)	ENSSMAG00000012742	ENSSMAG00000012828
Tongue sole	MODERN SPECIES	10	ENSCSEG00000018755	ENSCSEG00000018767	tpst1l (ENSCSEG00000018769)	asl (ENSCSEG00000018789)	crcp (ENSCSEG00000018814)	ca4c (ENSCSEG00000018817)	aldh3a2b (ENSCSEG00000018826)	ENSCSEG00000018838	vtnb (ENSCSEG00000018842)	cryba1b (ENSCSEG00000018863)	trarg1b (ENSCSEG00000018884)	pcyt1bb (ENSCSEG00000018888)	lipia (ENSCSEG00000018900)	ENSCSEG00000018912	ENSCSEG00000018928 #26	pdha1a (ENSCSEG00000018951) #22	prdx4 (ENSCSEG00000018975)	sat1a.2 (ENSCSEG00000018995)	ENSCSEG00000019105	zgc:153704 (ENSCSEG00000019108)	ZDHHC23 (ENSCSEG00000019112)	ATP6V1A (ENSCSEG00000019118)	ENSCSEG00000019129	slc7a3a (ENSCSEG00000019132)	snx12 (ENSCSEG00000019147)	ENSCSEG00000019156	slc9a6b (ENSCSEG00000019164)	exosc8 (ENSCSEG00000019201)	SUPT20H (ENSCSEG00000019177)	ugt5d1 (ENSCSEG00000019213)	ugt5d1 (ENSCSEG00000019234)
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Aplocheiloidei	ANCESTRAL SPECIES	23	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000178850	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Turquoise killifish	MODERN SPECIES	1620	nfrkb (ENSNFUG00015022706)	ENSNFUG00015023436	SMS (ENSNFUG00015023442) #36	ENSNFUG00015023467	ENSNFUG00015023472	Nfu_g_1_005297 (ENSNFUG00015023473)	ENSNFUG00015023477	ENSNFUG00015023479	ENSNFUG00015023487	ENSNFUG00015023491	zdhhc20a (ENSNFUG00015023497)	pcyt1bb (ENSNFUG00015023503)	lipia (ENSNFUG00015023506)	si:ch211-114c12.2 (ENSNFUG00015023507)	ENSNFUG00015023510 #26	pdha1a (ENSNFUG00015023533) #22	prdx4 (ENSNFUG00015023747)	sat1a.2 (ENSNFUG00015023760)	ZFX (ENSNFUG00015023762)	ZDHHC23A (ENSNFUG00015023765)	ATP6V1A (ENSNFUG00015023769)	GSX1 (ENSNFUG00015023772)	ENSNFUG00015004730	ENSNFUG00015004741	B4GALT4 (ENSNFUG00015004747)	ENSNFUG00015004755	CASR (ENSNFUG00015004766)	KIF20A (ENSNFUG00015004800)	GFRA3 (ENSNFUG00015004922)	SLC25A6 (ENSNFUG00015004935)	zbtb20 (ENSNFUG00015004957)
Mangrove rivulus	MODERN SPECIES	42	nfrkb (ENSKMAG00000022166)	RYR1 (ENSKMAG00000020504)	sms (ENSKMAG00000018618) #36	ENSKMAG00000018561	gabrr3a (ENSKMAG00000018544)	ENSKMAG00000018510	ENSKMAG00000018487	ENSKMAG00000018472	ENSKMAG00000018462	ENSKMAG00000018450	ENSKMAG00000018434	pcyt1bb (ENSKMAG00000018415)	LIPH (ENSKMAG00000018389)	si:ch211-114c12.2 (ENSKMAG00000018367)	ENSKMAG00000018346 #26	pdha1a (ENSKMAG00000018296) #22	prdx4 (ENSKMAG00000018258)	sat1a.2 (ENSKMAG00000018237)	ENSKMAG00000018225	zgc:153704 (ENSKMAG00000018188)	zdhhc23a (ENSKMAG00000018164)	ATP6V1A (ENSKMAG00000018112)	ENSKMAG00000018069	gsx1 (ENSKMAG00000018048)	ENSKMAG00000018038	ENSKMAG00000018015	CASR (ENSKMAG00000017975)	zgc:175280 (ENSKMAG00000017918)	kif20a (ENSKMAG00000017888)	cdc23 (ENSKMAG00000017835)
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00390000006852.A	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00390000006852.A	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000175409	ENSGT00940000163250.A.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Poecilia	ANCESTRAL SPECIES	7	ENSGT00390000006852.A	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000175409	ENSGT00940000163250.A.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
NAME_6	ANCESTRAL SPECIES	1	ENSGT00390000006852.A	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000175409	ENSGT00940000163250.A.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Sailfin molly	MODERN SPECIES	30	sms (ENSPLAG00000008055) #36	ENSPLAG00000007995	gabrr3a (ENSPLAG00000000721)	ENSPLAG00000007961	ENSPLAG00000007927	ENSPLAG00000007910	ENSPLAG00000007892	ENSPLAG00000007885	ENSPLAG00000007874	ENSPLAG00000007862	ENSPLAG00000007823	pcyt1bb (ENSPLAG00000007765)	lipia (ENSPLAG00000007740)	ENSPLAG00000007675	ENSPLAG00000007664 #26	pdha1a (ENSPLAG00000007620) #22	prdx4 (ENSPLAG00000007614)	sat1a.2 (ENSPLAG00000007586)	ENSPLAG00000007008	zgc:153704 (ENSPLAG00000006995)	zdhhc23a (ENSPLAG00000006921)	ATP6V1A (ENSPLAG00000006901)	ENSPLAG00000006854	gsx1 (ENSPLAG00000006847)	ENSPLAG00000006827
Amazon molly	MODERN SPECIES	255	ENSPFOG00000019238	sms (ENSPFOG00000019239) #36	ENSPFOG00000019241	gabrr3a (ENSPFOG00000019245)	ENSPFOG00000019250	ENSPFOG00000023073	ENSPFOG00000019251	ENSPFOG00000019254	ENSPFOG00000022976	ENSPFOG00000019263	ENSPFOG00000019267	pcyt1bb (ENSPFOG00000019271)	lipia (ENSPFOG00000019276)	ENSPFOG00000019280	ENSPFOG00000019281 #26	pdha1a (ENSPFOG00000019289) #22	prdx4 (ENSPFOG00000019300)	sat1a.2 (ENSPFOG00000019303)	ENSPFOG00000019306	zgc:153704 (ENSPFOG00000024718)	zdhhc23a (ENSPFOG00000019309)	ATP6V1A (ENSPFOG00000019313)	ENSPFOG00000019318	ENSPFOG00000019323	gsx1 (ENSPFOG00000019324)	ENSPFOG00000019327	b4galt4 (ENSPFOG00000019331)	CASR (ENSPFOG00000019334)	zgc:175280 (ENSPFOG00000019339)	kif20a (ENSPFOG00000019347)	cdc23 (ENSPFOG00000019353)
Guppy	MODERN SPECIES	444	sms (ENSPREG00000019739) #36	ENSPREG00000019778	gabrr3a (ENSPREG00000019809)	ENSPREG00000019824	ENSPREG00000019850	ENSPREG00000019854	ENSPREG00000019863	ENSPREG00000019869	lipia (ENSPREG00000019875)	ENSPREG00000019892	ENSPREG00000019909	pcyt1bb (ENSPREG00000019924)	ENSPREG00000019945	ENSPREG00000019959	ENSPREG00000019983 #26	pdha1a (ENSPREG00000020018) #22	prdx4 (ENSPREG00000020038)	sat1a.2 (ENSPREG00000020103)	zgc:153704 (ENSPREG00000020444)	zdhhc23a (ENSPREG00000020475)	ATP6V1A (ENSPREG00000020483)	ENSPREG00000020511	ENSPREG00000020526	gsx1 (ENSPREG00000020538)	ENSPREG00000020545	ENSPREG00000020550	b4galt4 (ENSPREG00000020565)	CASR (ENSPREG00000020592)	aifm1 (ENSPREG00000020714)	ENSPREG00000020769	amer1 (ENSPREG00000020786)
Platyfish	MODERN SPECIES	2	ENSXMAG00000023946	sms (ENSXMAG00000011323) #36	ENSXMAG00000011343	gabrr3a (ENSXMAG00000023172)	ENSXMAG00000013100	ENSXMAG00000013098	ENSXMAG00000025514	ENSXMAG00000021897	ENSXMAG00000013090	ENSXMAG00000013076	ENSXMAG00000013074	pcyt1bb (ENSXMAG00000013065)	lipia (ENSXMAG00000013055)	ENSXMAG00000013053	map7d2a (ENSXMAG00000013047) #26	pdha1a (ENSXMAG00000013025) #22	prdx4 (ENSXMAG00000013013)	sat1a.2 (ENSXMAG00000012998)	ENSXMAG00000012994	zdhhc23a (ENSXMAG00000012989)	ATP6V1A (ENSXMAG00000012982)	ENSXMAG00000011611	ENSXMAG00000012980	ENSXMAG00000012978	b4galt4 (ENSXMAG00000012973)	CASR (ENSXMAG00000012971)	zgc:175280 (ENSXMAG00000012958)	kif20a (ENSXMAG00000012940)	cdc23 (ENSXMAG00000028922)	ENSXMAG00000012915	slc25a5 (ENSXMAG00000020938)
NAME_4	ANCESTRAL SPECIES	5	ENSGT00390000016213	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00940000176119	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731.h	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Mummichog	MODERN SPECIES	693	ENSFHEG00000015546	sms (ENSFHEG00000015522) #36	ENSFHEG00000015498	gabrr3a (ENSFHEG00000015478)	ENSFHEG00000015450	ENSFHEG00000015429	ENSFHEG00000015417	ENSFHEG00000015402	ENSFHEG00000015397	ENSFHEG00000015387	pcyt1bb (ENSFHEG00000015373)	lipia (ENSFHEG00000015352)	ENSFHEG00000015307	ENSFHEG00000015299	ENSFHEG00000015293 #26	pdha1a (ENSFHEG00000015263) #22	prdx4 (ENSFHEG00000015259)	sat1a.2 (ENSFHEG00000015215)	ENSFHEG00000015210	zdhhc23a (ENSFHEG00000015191)	ATP6V1A (ENSFHEG00000015170)	ENSFHEG00000015150	ENSFHEG00000015125	gsx1 (ENSFHEG00000015114)	ENSFHEG00000015102	ENSFHEG00000015094	CASR (ENSFHEG00000015075)	zgc:175280 (ENSFHEG00000014818)	kif20a (ENSFHEG00000014776)	cdc23 (ENSFHEG00000014759)	ENSFHEG00000014699
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1846																pdha1a (ENSCVAG00000018203) #22	prdx4 (ENSCVAG00000018211)	sat1a.2 (ENSCVAG00000018221)	ENSCVAG00000018233	zgc:153704 (ENSCVAG00000018243)	ZDHHC23 (ENSCVAG00000018264)	ATP6V1A (ENSCVAG00000018353)
Sheepshead minnow	MODERN SPECIES	304	ENSCVAG00000006064	ENSCVAG00000006054	mmp14b (ENSCVAG00000006040)	ENSCVAG00000006032	ENSCVAG00000006027	ENSCVAG00000006019	cbln12 (ENSCVAG00000006016)	ENSCVAG00000006010	ENSCVAG00000005992	ENSCVAG00000005985	ENSCVAG00000005980	casq1a (ENSCVAG00000005973)	selenoj (ENSCVAG00000005955)	ENSCVAG00000005889	ENSCVAG00000005881 #26	ENSCVAG00000005870 #22
Oryzias	ANCESTRAL SPECIES	14	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A	ENSGT00940000165282.b
Indian medaka	MODERN SPECIES	4	RYR1 (ENSOMEG00000020650)	ENSOMEG00000000550	sms (ENSOMEG00000020761) #36	ENSOMEG00000020789 #21	gabrr3a (ENSOMEG00000020839)	ENSOMEG00000020856	ENSOMEG00000020905	ENSOMEG00000020919	ENSOMEG00000020928	ENSOMEG00000020942	ENSOMEG00000021080	pcyt1bb (ENSOMEG00000000691)	lipia (ENSOMEG00000021167)	ENSOMEG00000021199	ENSOMEG00000021301 #26	pdha1a (ENSOMEG00000021345) #22	prdx4 (ENSOMEG00000021752)	ENSOMEG00000021970	zgc:153704 (ENSOMEG00000021944)	zdhhc23a (ENSOMEG00000021989)	ATP6V1A (ENSOMEG00000022067)	ENSOMEG00000022117	ENSOMEG00000022150	gsx1 (ENSOMEG00000022169)	ENSOMEG00000022186	ENSOMEG00000022228	b4galt4 (ENSOMEG00000022251)	CASR (ENSOMEG00000022274)	zgc:175280 (ENSOMEG00000000588)	kif20a (ENSOMEG00000022448)	cdc23 (ENSOMEG00000022499)
Javanese ricefish	MODERN SPECIES	5	dnajc18 (ENSOJAG00000018735)	BRD8 (ENSOJAG00000018611)	tmem45b (ENSOJAG00000018587)	nfrkb (ENSOJAG00000018509)	ENSOJAG00000017532	sms (ENSOJAG00000017522) #36	ENSOJAG00000017473	gabrr3a (ENSOJAG00000017423)	ENSOJAG00000017402	ENSOJAG00000017373	ENSOJAG00000016882	pcyt1bb (ENSOJAG00000016763)	lipia (ENSOJAG00000016709)	ENSOJAG00000016685	ENSOJAG00000016672	pdha1a (ENSOJAG00000016153) #22	prdx4 (ENSOJAG00000016032)	ENSOJAG00000016000	zgc:153704 (ENSOJAG00000015991)	zdhhc23a (ENSOJAG00000015983)	ATP6V1A (ENSOJAG00000015849)	ENSOJAG00000015829	ENSOJAG00000015794	gsx1 (ENSOJAG00000015778)	ENSOJAG00000015560	b4galt4 (ENSOJAG00000015548)	CASR (ENSOJAG00000015518)	zgc:175280 (ENSOJAG00000015419)	kif20a (ENSOJAG00000014973)	cdc23 (ENSOJAG00000014709)	ENSOJAG00000014688
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT01100000263608	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Chinese medaka	MODERN SPECIES	717	nfrkb (ENSOSIG00000013852)	ENSOSIG00000011501	sms (ENSOSIG00000011500) #36	ENSOSIG00000011499	gabrr3a (ENSOSIG00000011263)	ENSOSIG00000011254	ENSOSIG00000011251	ENSOSIG00000011243	ENSOSIG00000011238	ENSOSIG00000011236	ENSOSIG00000011220	pcyt1bb (ENSOSIG00000011215)	lipia (ENSOSIG00000011209)	si:ch211-114c12.2 (ENSOSIG00000011207)	ENSOSIG00000011205 #26	pdha1a (ENSOSIG00000010900) #22	prdx4 (ENSOSIG00000010890)	ENSOSIG00000010889	zgc:153704 (ENSOSIG00000010888)	zdhhc23a (ENSOSIG00000010887)	ATP6V1A (ENSOSIG00000010886)	ENSOSIG00000010853	gsx1 (ENSOSIG00000010852)	ENSOSIG00000010851	b4galt4 (ENSOSIG00000010850)	CASR (ENSOSIG00000010849)	zgc:175280 (ENSOSIG00000010818)	kif20a (ENSOSIG00000010768)	cdc23 (ENSOSIG00000010313)	ENSOSIG00000010304	slc25a5 (ENSOSIG00000010301)
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000026245	ENSORLG00000027409	sms (ENSORLG00000006393) #36	ENSORLG00000029344	gabrr3a (ENSORLG00000006406)	ENSORLG00000006412	ENSORLG00000023874	ENSORLG00000030104	ENSORLG00000025777	ENSORLG00000006465	ENSORLG00000006478	pcyt1bb (ENSORLG00000006497)	lipia (ENSORLG00000006515)	si:ch211-114c12.2 (ENSORLG00000006523)	ENSORLG00000006548 #26	pdha1a (ENSORLG00000006582) #22	prdx4 (ENSORLG00000006589)	ENSORLG00000006601	zgc:153704 (ENSORLG00000006624)	zdhhc23a (ENSORLG00000006632)	ENSORLG00000006642	ENSORLG00000006655	ENSORLG00000028095	gsx1 (ENSORLG00000006664)	ENSORLG00000006672	ENSORLG00000022920	b4galt4 (ENSORLG00000006677)	CASR (ENSORLG00000006682)	zgc:175280 (ENSORLG00000006716)	kif20a (ENSORLG00000006748)	cdc23 (ENSORLG00000006778)
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT01100000263497.D	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00530000064262.pc.a	ENSGT01100000263497.D	ENSGT00940000157181	ENSGT00390000016213	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d	ENSGT00940000156931	ENSGT00950000182950.A
Orange clownfish	MODERN SPECIES	6	tmem45b (ENSAPEG00000024308)	nfrkb (ENSAPEG00000024317)	RYR1 (ENSAPEG00000024341)	sms (ENSAPEG00000024395) #36	ENSAPEG00000024399	gabrr3a (ENSAPEG00000024405)	ENSAPEG00000024411	ENSAPEG00000024414	ENSAPEG00000024422	ENSAPEG00000024429	ENSAPEG00000024437	pcyt1bb (ENSAPEG00000024445)	lipia (ENSAPEG00000024452)	ENSAPEG00000024464	map7d2a (ENSAPEG00000024471) #26	pdha1a (ENSAPEG00000024477) #22	prdx4 (ENSAPEG00000024495)	sat1a.2 (ENSAPEG00000024500)	ENSAPEG00000024509	zgc:153704 (ENSAPEG00000024513)	ZDHHC23 (ENSAPEG00000024521)	ATP6V1A (ENSAPEG00000024526)	ENSAPEG00000024532	gsx1 (ENSAPEG00000024536)	ENSAPEG00000024539	ENSAPEG00000024542	b4galt4 (ENSAPEG00000000316)	CASR (ENSAPEG00000000343)	zgc:175280 (ENSAPEG00000000390)	kif20a (ENSAPEG00000000528)	cdc23 (ENSAPEG00000000605)
Clown anemonefish	MODERN SPECIES	1379										ENSAOCG00000023917	ENSAOCG00000023886	pcyt1bb (ENSAOCG00000023869)	lipia (ENSAOCG00000023856)	ENSAOCG00000023841	map7d2a (ENSAOCG00000023830) #26	pdha1a (ENSAOCG00000023806) #22	prdx4 (ENSAOCG00000023779)	sat1a.2 (ENSAOCG00000023762)	ENSAOCG00000001732	zgc:153704 (ENSAOCG00000023715)
Spiny chromis	MODERN SPECIES	87	RYR1 (ENSAPOG00000008048)	ENSAPOG00000007683	sms (ENSAPOG00000007654) #36	ENSAPOG00000007573	gabrr3a (ENSAPOG00000007548)	ENSAPOG00000007497	ENSAPOG00000007487	ENSAPOG00000007473	ENSAPOG00000007460	ENSAPOG00000007431	ENSAPOG00000007337	pcyt1bb (ENSAPOG00000007268)	lipia (ENSAPOG00000007208)	ENSAPOG00000007195	map7d2a (ENSAPOG00000007171) #26	pdha1a (ENSAPOG00000007131) #22	prdx4 (ENSAPOG00000007077)	sat1a.2 (ENSAPOG00000007028)	ENSAPOG00000006989	zgc:153704 (ENSAPOG00000006968)	ZDHHC23 (ENSAPOG00000006939)	ATP6V1A (ENSAPOG00000006922)	ENSAPOG00000006857	gsx1 (ENSAPOG00000006823)	ARHGAP31 (ENSAPOG00000006810)	ENSAPOG00000006796	b4galt4 (ENSAPOG00000006778)	CASR (ENSAPOG00000006738)	zgc:175280 (ENSAPOG00000006459)	kif20a (ENSAPOG00000006379)	cdc23 (ENSAPOG00000006290)
Bicolor damselfish	MODERN SPECIES	303												ENSSPAG00000003188	pcyt1bb (ENSSPAG00000003157)	lipia (ENSSPAG00000003124)	si:ch211-114c12.2 (ENSSPAG00000003103)	pdha1a (ENSSPAG00000003053) #22	prdx4 (ENSSPAG00000003032)	sat1a.2 (ENSSPAG00000003021)	ENSSPAG00000002994	ENSSPAG00000002967	ZDHHC23 (ENSSPAG00000002941)	ATP6V1A (ENSSPAG00000002871)	ENSSPAG00000002775	gsx1 (ENSSPAG00000002754)	ENSSPAG00000002737	b4galt4 (ENSSPAG00000002731)	CASR (ENSSPAG00000002702)	zgc:175280 (ENSSPAG00000002654)	kif20a (ENSSPAG00000002610)	cdc23 (ENSSPAG00000002552)	ENSSPAG00000002519
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b.b	ENSGT01050000244868.c.b.a	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00940000177567	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l.g #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b.b.a	ENSGT01050000244868.c.b.a	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	21	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l.g #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b.b.a	ENSGT01050000244868.c.b.a	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l.g #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b.b.a	ENSGT01050000244868.c.b.a.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d
Burton s mouthbrooder	MODERN SPECIES	316							ENSHBUG00000021201	ENSHBUG00000021206	ENSHBUG00000021239	ENSHBUG00000021258	pcyt1bb (ENSHBUG00000021299)	lipia (ENSHBUG00000021316)	ENSHBUG00000021328	si:ch211-114c12.2 (ENSHBUG00000021339)	map7d2a (ENSHBUG00000021357) #26	pdha1a (ENSHBUG00000021401) #22	prdx4 (ENSHBUG00000000661)	sat1a.2 (ENSHBUG00000021459)	ENSHBUG00000021473	zgc:153704 (ENSHBUG00000021480)	zgc:153704 (ENSHBUG00000021535)	ATP6V1A (ENSHBUG00000000666)	ENSHBUG00000021571	ENSHBUG00000021585	gsx1 (ENSHBUG00000021594)	ENSHBUG00000021606	ENSHBUG00000021621	b4galt4 (ENSHBUG00000021627)	CASR (ENSHBUG00000021647)	zgc:175280 (ENSHBUG00000021656)	kif20a (ENSHBUG00000021672)
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l.g #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b.b.a	ENSGT01050000244868.c.b.a.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d
P. nyererei	MODERN SPECIES	359	ENSPNYG00000014104	ENSPNYG00000014123	sms (ENSPNYG00000014145) #36	ENSPNYG00000014195	gabrr3a (ENSPNYG00000014222)	ENSPNYG00000014242	ENSPNYG00000014252	ENSPNYG00000014265	ENSPNYG00000014281	ENSPNYG00000014293	ENSPNYG00000014324	pcyt1bb (ENSPNYG00000014353)	lipia (ENSPNYG00000014394)	si:ch211-114c12.2 (ENSPNYG00000014431)	ENSPNYG00000014450	pdha1a (ENSPNYG00000014473) #22	prdx4 (ENSPNYG00000014516)	sat1a.2 (ENSPNYG00000014534)	ENSPNYG00000014545	zgc:153704 (ENSPNYG00000014561)	zgc:153704 (ENSPNYG00000014578)	zdhhc23a (ENSPNYG00000014639)	ATP6V1A (ENSPNYG00000014738)	ENSPNYG00000014817	gsx1 (ENSPNYG00000014873)	ENSPNYG00000014892	ENSPNYG00000014906	b4galt4 (ENSPNYG00000014923)	CASR (ENSPNYG00000014966)	zgc:175280 (ENSPNYG00000015150)	ENSPNYG00000015194
Haplochromini_B	ANCESTRAL SPECIES	26	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000177447	ENSGT00870000136506 #36	ENSGT00940000164851.a	ENSGT00940000159906.e	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b	ENSGT01100000263599	ENSGT00940000163831.f	ENSGT00940000153716.A.l	ENSGT00940000156040.f	ENSGT00940000156285	ENSGT00410000026585	ENSGT00950000182941.b.b.b.a #26	ENSGT00530000063174.a.l.g #22	ENSGT00940000153430.a.a	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000164731	ENSGT01050000244868.c.b.b.a	ENSGT01050000244868.c.b.a.b	ENSGT00940000156558.a.b	ENSGT00550000074787.d.a.b	ENSGT00950000182962.a.a.c	ENSGT00940000167349	ENSGT00940000154361.A	ENSGT00940000159458.e.a	ENSGT00940000159458.e.b	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000164978.b.d
Zebra mbuna	MODERN SPECIES	1092	ENSMZEG00005018520	sms (ENSMZEG00005018510) #36	ENSMZEG00005018497	ENSMZEG00005018493	gabrr3a (ENSMZEG00005018491)	ENSMZEG00005018486	ENSMZEG00005018482	ENSMZEG00005018475	ENSMZEG00005018471	ENSMZEG00005018469	ENSMZEG00005018460	pcyt1bb (ENSMZEG00005018447)	lipia (ENSMZEG00005018433)	si:ch211-114c12.2 (ENSMZEG00005018427)	map7d2a (ENSMZEG00005018420) #26	pdha1a (ENSMZEG00005018412) #22	prdx4 (ENSMZEG00005018405)	sat1a.2 (ENSMZEG00005018402)	ENSMZEG00005018392	zgc:153704 (ENSMZEG00005018387)	zgc:153704 (ENSMZEG00005018384)	ZDHHC23 (ENSMZEG00005018383)	ENSMZEG00005018377	ZDHHC23 (ENSMZEG00005018373)	ATP6V1A (ENSMZEG00005018360)	ENSMZEG00005018353	gsx1 (ENSMZEG00005018350)	ENSMZEG00005018346	b4galt4 (ENSMZEG00005018344)	CASR (ENSMZEG00005017168)	zgc:175280 (ENSMZEG00005017124)
Eastern happy	MODERN SPECIES	1	ENSACLG00000019160	ENSACLG00000019149	sms (ENSACLG00000019104) #36	ENSACLG00000019054	gabrr3a (ENSACLG00000018998)	ENSACLG00000018951	ENSACLG00000018932	ENSACLG00000018921	ENSACLG00000018920	ENSACLG00000018886	ENSACLG00000018808	pcyt1bb (ENSACLG00000018767)	lipia (ENSACLG00000018742)	si:ch211-114c12.2 (ENSACLG00000018719)	map7d2a (ENSACLG00000018680) #26	pdha1a (ENSACLG00000018627) #22	prdx4 (ENSACLG00000018585)	sat1a.2 (ENSACLG00000018570)	ENSACLG00000018550	ENSACLG00000018527	zgc:153704 (ENSACLG00000018513)	zgc:153704 (ENSACLG00000018503)	zdhhc23a (ENSACLG00000018489)	ATP6V1A (ENSACLG00000018400)	ENSACLG00000018366	ENSACLG00000018332	gsx1 (ENSACLG00000018323)	ENSACLG00000018286	ENSACLG00000018269	b4galt4 (ENSACLG00000018259)	CASR (ENSACLG00000018246)
Lyretail cichlid	MODERN SPECIES	358	ENSNBRG00000005309	ENSNBRG00000005294	sms (ENSNBRG00000005254) #36	ENSNBRG00000005229	gabrr3a (ENSNBRG00000005209)	ENSNBRG00000005184	ENSNBRG00000005169	ENSNBRG00000005156	ENSNBRG00000005133	ENSNBRG00000005121	ENSNBRG00000005081	pcyt1bb (ENSNBRG00000005071)	lipia (ENSNBRG00000005059)	si:ch211-114c12.2 (ENSNBRG00000005048)	ENSNBRG00000005017 #26	pdha1a (ENSNBRG00000004969) #22
Nile tilapia	MODERN SPECIES	1	nfrkb (ENSONIG00000005012)	ENSONIG00000030517	sms (ENSONIG00000005102) #36	ENSONIG00000005105	gabrr3a (ENSONIG00000005108)	ENSONIG00000005109	ENSONIG00000005110	ENSONIG00000036817	ENSONIG00000005113	ENSONIG00000005117	pcyt1bb (ENSONIG00000005126)	lipia (ENSONIG00000005129)	si:ch211-114c12.2 (ENSONIG00000005136)	ENSONIG00000027365	ENSONIG00000005138 #26	pdha1a (ENSONIG00000005140) #22	prdx4 (ENSONIG00000005145)	sat1a.2 (ENSONIG00000035625)	ENSONIG00000043207	ENSONIG00000029108	zgc:153704 (ENSONIG00000041602)	zgc:153704 (ENSONIG00000005151)	zdhhc23a (ENSONIG00000005152)	ATP6V1A (ENSONIG00000005153)	ENSONIG00000005158	ENSONIG00000005160	gsx1 (ENSONIG00000005163)	ENSONIG00000005164	b4galt4 (ENSONIG00000005167)	CASR (ENSONIG00000005168)	zgc:175280 (ENSONIG00000005172)
Pseudocrenilabrinae	ANCESTRAL SPECIES	75															ENSGT00940000165704.b.a.a.b	ENSGT00530000063174.a.l.h #22	ENSGT00940000165704.a.a	ENSGT00940000164025.a.b.a	ENSGT00940000164025.a.b.b	ENSGT00940000154762.a.b.a.a.a.b
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	1	cldn30 (ENSONIG00000028092)	CLDN4 (ENSONIG00000021100)	ENSONIG00000041008	pdha1a (ENSONIG00000008761) #22	ENSONIG00000041413	ENSONIG00000035527	ENSONIG00000030521	ENSONIG00000028894	ENSONIG00000040031	ENSONIG00000042206	ENSONIG00000031461	ENSONIG00000021101	ENSONIG00000031392	ENSONIG00000027657	ENSONIG00000036059	pdha1a (ENSONIG00000008757) #22	cldnd (ENSONIG00000021099)	cldn29 (ENSONIG00000035870)	ENSONIG00000021097	cldn3d (ENSONIG00000008756)	cldn3c (ENSONIG00000031570)	abhd11 (ENSONIG00000008755)	sumf2 (ENSONIG00000028659)	cct6a (ENSONIG00000008750)	ENSONIG00000008747	mrps17 (ENSONIG00000008746)	LIMK1 (ENSONIG00000008736)	septin4a (ENSONIG00000008732)	mntb (ENSONIG00000008731)	pafah1b1b (ENSONIG00000008138)	CLUH (ENSONIG00000008724)
Nile tilapia	MODERN SPECIES	1	nsrp1 (ENSONIG00000005565)	ENSONIG00000005524	ENSONIG00000041020	ENSONIG00000033488	ENSONIG00000028639	ENSONIG00000005520	ENSONIG00000005519	supt6h (ENSONIG00000005512)	sdf2 (ENSONIG00000036746)	ENSONIG00000039680	nf2b (ENSONIG00000005502)	mettl27 (ENSONIG00000005501)	cldn30 (ENSONIG00000028092)	CLDN4 (ENSONIG00000021100)	ENSONIG00000041008	pdha1a (ENSONIG00000008761) #22	ENSONIG00000041413	ENSONIG00000035527	ENSONIG00000030521	ENSONIG00000028894	ENSONIG00000040031	ENSONIG00000042206	ENSONIG00000031461	ENSONIG00000021101	ENSONIG00000031392	ENSONIG00000027657	ENSONIG00000036059	pdha1a (ENSONIG00000008757) #22	cldnd (ENSONIG00000021099)	cldn29 (ENSONIG00000035870)	ENSONIG00000021097
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	22	ENSGT00950000182902.b.b.a	ENSGT00390000011517.a.a.c.a.a	ENSGT00940000159328	ENSGT00940000157430.a.a	ENSGT00940000154049.a	ENSGT00940000160421.j.j	ENSGT00940000166536	ENSGT00510000047446	ENSGT00940000158885	ENSGT00940000159212.b	ENSGT01020000230354.B.b.a.a	ENSGT00530000063975.j	ENSGT00940000164025.b.b	ENSGT00940000165704.b.b	ENSGT00940000165704.b.a.a.b	ENSGT00530000063174.a.l.h #22	ENSGT00940000165704.a.a	ENSGT00940000164025.a.b.a	ENSGT00940000164025.a.b.b	ENSGT00940000154762.a.b.a.a.a.b	ENSGT00940000163648.a.a.a.a	ENSGT00940000166320	ENSGT00390000015880	ENSGT00940000162897	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000064130	ENSGT00940000156345.k.b	ENSGT00940000157152.B	ENSGT00510000048287.a	ENSGT00940000155039.a.b
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00390000011517.a.a.c.a.a	ENSGT00940000159328	ENSGT00940000157430.a.a	ENSGT00940000154049.a	ENSGT00940000178013	ENSGT00940000160421.j.j	ENSGT00940000166536	ENSGT00510000047446	ENSGT00940000158885	ENSGT00940000159212.b	ENSGT01020000230354.B.b.a.a	ENSGT00530000063975.j	ENSGT00940000164025.b.b	ENSGT00940000165704.b.b	ENSGT00940000165704.b.a.a.b	ENSGT00530000063174.a.l.h #22	ENSGT00940000164025.a.b.a	ENSGT00940000164025.a.b.b	ENSGT00940000154762.a.b.a.a.a.b	ENSGT00940000163648.a.a.a.a	ENSGT00940000166320	ENSGT00390000015880	ENSGT00940000162897	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000064130	ENSGT00940000182251	ENSGT00940000156345.k.b	ENSGT00940000157152.B	ENSGT00510000048287.a	ENSGT00940000155039.a.b
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000159328	ENSGT00940000157430.a.a	ENSGT00940000154049.a	ENSGT00940000178013	ENSGT00940000160421.j.j	ENSGT00940000166536	ENSGT00510000047446	ENSGT00940000158885	ENSGT00940000159212.b	ENSGT01020000230354.B.b.a.a	ENSGT00530000063975.j	ENSGT00940000164025.b.b	ENSGT00940000165704.b.b	ENSGT00940000164025.a.a.a.a	ENSGT00940000165704.b.a.a.b	ENSGT00530000063174.a.l.h #22	ENSGT00940000164025.a.b.a	ENSGT00940000164025.a.b.b	ENSGT00940000154762.a.b.a.a.a.b	ENSGT00940000163648.a.a.a.a	ENSGT00940000166320	ENSGT00390000015880	ENSGT00940000162897	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000064130	ENSGT00940000182251	ENSGT00940000156345.k.b	ENSGT00940000157152.B	ENSGT00510000048287.a	ENSGT00940000155039.a.b
Haplochromini_B	ANCESTRAL SPECIES	16	ENSGT00390000011517.a.a.c.a.a	ENSGT00940000159328	ENSGT00940000157430.a.a	ENSGT00940000154049.a	ENSGT00940000178013	ENSGT00940000160421.j.j	ENSGT00940000166536	ENSGT00510000047446	ENSGT00940000158885	ENSGT00940000159212.b	ENSGT01020000230354.B.b.a.a	ENSGT00530000063975.j	ENSGT00940000164025.b.b	ENSGT00940000164025.a.a.a.a	ENSGT00940000165704.b.a.a.b	ENSGT00530000063174.a.l.h #22	ENSGT00940000164025.a.b.a	ENSGT00940000164025.a.b.b	ENSGT00940000154762.a.b.a.a.a.b	ENSGT00940000163648.a.a.a.a	ENSGT00940000166320	ENSGT00390000015880	ENSGT00940000162897	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000064130	ENSGT00940000156345.k.b	ENSGT00940000157152.B	ENSGT00510000048287.a	ENSGT00940000155039.a.b	ENSGT00390000012485.a.b.b
Zebra mbuna	MODERN SPECIES	1092	nsrp1 (ENSMZEG00005024743)	ENSMZEG00005024744	ENSMZEG00005024768	ENSMZEG00005024773	supt6h (ENSMZEG00005024774)	sdf2 (ENSMZEG00005024775)	ENSMZEG00005024776	nf2b (ENSMZEG00005024777)	mettl27 (ENSMZEG00005024778)	cldn30 (ENSMZEG00005024779)	CLDN4 (ENSMZEG00005024780)	ENSMZEG00005024781	ENSMZEG00005024782	ENSMZEG00005024783	ENSMZEG00005024784	ENSMZEG00005024785 #22	cldnd (ENSMZEG00005024786)	cldn29 (ENSMZEG00005024787)	cldnb (ENSMZEG00005024801)	cldn3d (ENSMZEG00005024849)	cldn3c (ENSMZEG00005024851)	abhd11 (ENSMZEG00005024865)	sumf2 (ENSMZEG00005024867)	cct6a (ENSMZEG00005024869)	ENSMZEG00005024874	mrps17 (ENSMZEG00005024876)	LIMK1 (ENSMZEG00005024878)	septin4a (ENSMZEG00005024888)	mntb (ENSMZEG00005025173)	pafah1b1b (ENSMZEG00005025175)	CLUH (ENSMZEG00005025181)
Eastern happy	MODERN SPECIES	1	ENSACLG00000005733	supt6h (ENSACLG00000005753)	sdf2 (ENSACLG00000005842)	CALN1 (ENSACLG00000005848)	nf2b (ENSACLG00000005869)	mettl27 (ENSACLG00000005960)	cldn30 (ENSACLG00000005979)	CLDN4 (ENSACLG00000005987)	ENSACLG00000006054	ENSACLG00000006063	ENSACLG00000006074	ENSACLG00000006086	ENSACLG00000006397	ENSACLG00000006401	ENSACLG00000006403	ENSACLG00000006408 #22	cldnd (ENSACLG00000006448)	ENSACLG00000006571	cldn29 (ENSACLG00000006738)	cldnb (ENSACLG00000006764)	cldn3d (ENSACLG00000006795)	cldn3c (ENSACLG00000006823)	abhd11 (ENSACLG00000006843)	sumf2 (ENSACLG00000006854)	cct6a (ENSACLG00000006865)	ENSACLG00000006939	mrps17 (ENSACLG00000007174)	ENSACLG00000007190	LIMK1 (ENSACLG00000007198)	septin4a (ENSACLG00000007242)	mntb (ENSACLG00000007275)
P. nyererei	MODERN SPECIES	321													ENSPNYG00000019000	ENSPNYG00000018990	ENSPNYG00000018979	pdha1a (ENSPNYG00000018954) #22	cldnd (ENSPNYG00000018943)	ENSPNYG00000018937	CLDN4 (ENSPNYG00000018919)	cldn3d (ENSPNYG00000018872)	cldn3c (ENSPNYG00000018855)	abhd11 (ENSPNYG00000018833)	sumf2 (ENSPNYG00000018820)	cct6a (ENSPNYG00000018731)	NIPSNAP2 (ENSPNYG00000018700)	mrps17 (ENSPNYG00000018693)	ENSPNYG00000018680	LIMK1 (ENSPNYG00000018623)	septin4a (ENSPNYG00000018040)	mntb (ENSPNYG00000017928)	pafah1b1b (ENSPNYG00000017901)
Burton s mouthbrooder	MODERN SPECIES	347														ENSHBUG00000006477	ENSHBUG00000001039	ENSHBUG00000006450 #22	ENSHBUG00000006431	ENSHBUG00000006422	cldn29 (ENSHBUG00000006372)	cldnb (ENSHBUG00000006353)	cldn3d (ENSHBUG00000006314)	cldn3c (ENSHBUG00000006266)	abhd11 (ENSHBUG00000006255)	sumf2 (ENSHBUG00000006248)	cct6a (ENSHBUG00000006235)	NIPSNAP2 (ENSHBUG00000006168)	mrps17 (ENSHBUG00000006127)	ENSHBUG00000006121	LIMK1 (ENSHBUG00000006097)	septin4a (ENSHBUG00000005988)	mntb (ENSHBUG00000005405)
Lyretail cichlid	MODERN SPECIES	297		ENSNBRG00000000959	ENSNBRG00000000995	supt6h (ENSNBRG00000001035)	sdf2 (ENSNBRG00000001135)	ENSNBRG00000001162	nf2b (ENSNBRG00000001190)	mettl27 (ENSNBRG00000001252)	cldn30 (ENSNBRG00000001263)	CLDN4 (ENSNBRG00000001277)	ENSNBRG00000001361	ENSNBRG00000001385	ENSNBRG00000001389	ENSNBRG00000001407	ENSNBRG00000001431	pdha1a (ENSNBRG00000001449) #22	ENSNBRG00000001496	cldnd (ENSNBRG00000001514)	cldn29 (ENSNBRG00000001529)	cldnb (ENSNBRG00000001609)	cldn3d (ENSNBRG00000001750)	cldn3c (ENSNBRG00000001807)	abhd11 (ENSNBRG00000001879)	sumf2 (ENSNBRG00000001930)	cct6a (ENSNBRG00000002182)	NIPSNAP2 (ENSNBRG00000002230)	mrps17 (ENSNBRG00000002238)	LIMK1 (ENSNBRG00000002260)	septin4a (ENSNBRG00000002328)	mntb (ENSNBRG00000002363)	pafah1b1b (ENSNBRG00000002400)
Midas cichlid	MODERN SPECIES	888	RYR1 (ENSACIG00000002680)	ENSACIG00000002660	sms (ENSACIG00000002629) #36	ENSACIG00000002611	gabrr3a (ENSACIG00000002584)	ENSACIG00000002560	ENSACIG00000002555	ENSACIG00000002536	ENSACIG00000002523	ENSACIG00000002495	ENSACIG00000002469	pcyt1bb (ENSACIG00000002420)	lipia (ENSACIG00000002397)	si:ch211-114c12.2 (ENSACIG00000002374)	ENSACIG00000002366	pdha1a (ENSACIG00000002343) #22	prdx4 (ENSACIG00000002324)	sat1a.2 (ENSACIG00000002087)	ENSACIG00000002038	zgc:153704 (ENSACIG00000001818)	zgc:153704 (ENSACIG00000001585)	zgc:153704 (ENSACIG00000001404)	zgc:153704 (ENSACIG00000001381)	ZDHHC23 (ENSACIG00000001340)	ATP6V1A (ENSACIG00000001309)	ENSACIG00000001283	ENSACIG00000001273	gsx1 (ENSACIG00000001245)	ENSACIG00000001232	b4galt4 (ENSACIG00000001214)	CASR (ENSACIG00000001191)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	214	tmem45b (ENSHCOG00000019990)	nfrkb (ENSHCOG00000020060)	ENSHCOG00000020276	ENSHCOG00000020291	sms (ENSHCOG00000020312) #36	ENSHCOG00000020322	gabrr3a (ENSHCOG00000020336)	ENSHCOG00000000544	ENSHCOG00000020350	ENSHCOG00000020360	ENSHCOG00000020380	ENSHCOG00000020405	pcyt1bb (ENSHCOG00000020434)	lipia (ENSHCOG00000020444)	si:ch211-114c12.2 (ENSHCOG00000020456)	pdha1a (ENSHCOG00000020485) #22	ENSHCOG00000020742 #22	ENSHCOG00000020773 #22	ENSHCOG00000020784 #22	prdx4 (ENSHCOG00000020811)	sat1a.2 (ENSHCOG00000020844)	ENSHCOG00000020900	zgc:153704 (ENSHCOG00000020922)	zdhhc23a (ENSHCOG00000020942)	ATP6V1A (ENSHCOG00000020971)	ENSHCOG00000020973	gsx1 (ENSHCOG00000021013)	ENSHCOG00000021019	ENSHCOG00000001294	b4galt4 (ENSHCOG00000001297)	CASR (ENSHCOG00000001304)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	214	ENSHCOG00000020276	ENSHCOG00000020291	sms (ENSHCOG00000020312) #36	ENSHCOG00000020322	gabrr3a (ENSHCOG00000020336)	ENSHCOG00000000544	ENSHCOG00000020350	ENSHCOG00000020360	ENSHCOG00000020380	ENSHCOG00000020405	pcyt1bb (ENSHCOG00000020434)	lipia (ENSHCOG00000020444)	si:ch211-114c12.2 (ENSHCOG00000020456)	pdha1a (ENSHCOG00000020485) #22	ENSHCOG00000020742 #22	ENSHCOG00000020773 #22	ENSHCOG00000020784 #22	prdx4 (ENSHCOG00000020811)	sat1a.2 (ENSHCOG00000020844)	ENSHCOG00000020900	zgc:153704 (ENSHCOG00000020922)	zdhhc23a (ENSHCOG00000020942)	ATP6V1A (ENSHCOG00000020971)	ENSHCOG00000020973	gsx1 (ENSHCOG00000021013)	ENSHCOG00000021019	ENSHCOG00000001294	b4galt4 (ENSHCOG00000001297)	CASR (ENSHCOG00000001304)	CASR (ENSHCOG00000001307)	zgc:175280 (ENSHCOG00000001352)
Tiger tail seahorse	MODERN SPECIES	214	ENSHCOG00000020291	sms (ENSHCOG00000020312) #36	ENSHCOG00000020322	gabrr3a (ENSHCOG00000020336)	ENSHCOG00000000544	ENSHCOG00000020350	ENSHCOG00000020360	ENSHCOG00000020380	ENSHCOG00000020405	pcyt1bb (ENSHCOG00000020434)	lipia (ENSHCOG00000020444)	si:ch211-114c12.2 (ENSHCOG00000020456)	pdha1a (ENSHCOG00000020485) #22	ENSHCOG00000020742 #22	ENSHCOG00000020773 #22	ENSHCOG00000020784 #22	prdx4 (ENSHCOG00000020811)	sat1a.2 (ENSHCOG00000020844)	ENSHCOG00000020900	zgc:153704 (ENSHCOG00000020922)	zdhhc23a (ENSHCOG00000020942)	ATP6V1A (ENSHCOG00000020971)	ENSHCOG00000020973	gsx1 (ENSHCOG00000021013)	ENSHCOG00000021019	ENSHCOG00000001294	b4galt4 (ENSHCOG00000001297)	CASR (ENSHCOG00000001304)	CASR (ENSHCOG00000001307)	zgc:175280 (ENSHCOG00000001352)	cdc23 (ENSHCOG00000001380)
Tiger tail seahorse	MODERN SPECIES	214	nfrkb (ENSHCOG00000020060)	ENSHCOG00000020276	ENSHCOG00000020291	sms (ENSHCOG00000020312) #36	ENSHCOG00000020322	gabrr3a (ENSHCOG00000020336)	ENSHCOG00000000544	ENSHCOG00000020350	ENSHCOG00000020360	ENSHCOG00000020380	ENSHCOG00000020405	pcyt1bb (ENSHCOG00000020434)	lipia (ENSHCOG00000020444)	si:ch211-114c12.2 (ENSHCOG00000020456)	pdha1a (ENSHCOG00000020485) #22	ENSHCOG00000020742 #22	ENSHCOG00000020773 #22	ENSHCOG00000020784 #22	prdx4 (ENSHCOG00000020811)	sat1a.2 (ENSHCOG00000020844)	ENSHCOG00000020900	zgc:153704 (ENSHCOG00000020922)	zdhhc23a (ENSHCOG00000020942)	ATP6V1A (ENSHCOG00000020971)	ENSHCOG00000020973	gsx1 (ENSHCOG00000021013)	ENSHCOG00000021019	ENSHCOG00000001294	b4galt4 (ENSHCOG00000001297)	CASR (ENSHCOG00000001304)	CASR (ENSHCOG00000001307)
Cod	MODERN SPECIES	20	zgc:163098 (ENSGMOG00000000935)	ENSGMOG00000000893	ENSGMOG00000000912	ENSGMOG00000002123 #36	ENSGMOG00000002145	gabrr3a (ENSGMOG00000014262)	ENSGMOG00000026928	ENSGMOG00000024330	ENSGMOG00000024025	ENSGMOG00000029199	ENSGMOG00000002240	ENSGMOG00000002261	ENSGMOG00000002276	ENSGMOG00000002297	ENSGMOG00000030680	ENSGMOG00000002378 #22	prdx4 (ENSGMOG00000002394)	sat1a.2 (ENSGMOG00000025474)	ENSGMOG00000023676	zgc:153704 (ENSGMOG00000002433)	ENSGMOG00000002452	ENSGMOG00000002483	ENSGMOG00000002508	ENSGMOG00000023452	ENSGMOG00000033627	b4galt4 (ENSGMOG00000002654)	ENSGMOG00000002672	zgc:175280 (ENSGMOG00000002684)	KIF20A (ENSGMOG00000002724)	ENSGMOG00000002777	ENSGMOG00000002813
Protacanthopterygii	ANCESTRAL SPECIES	83	ENSGT00940000159458	ENSGT00940000158378	ENSGT00940000157596	ENSGT00940000160838	ENSGT00940000164978.b.d	ENSGT00940000153322.B.d.b	ENSGT00940000159385.e.b	ENSGT01030000234788	ENSGT00390000014424	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l #22	ENSGT00940000159370.f #29	ENSGT00390000008256.vd.a #28	ENSGT00950000182941.b.b.b.a #26	ENSGT00410000026585	ENSGT00940000176119	ENSGT00940000156285	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028	ENSGT00390000004986	ENSGT00940000155053.c.b	ENSGT00940000160633.a.b	ENSGT00940000156040.f	ENSGT00940000163831.f	ENSGT00940000153716.A.l
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	107	ENSGT01030000234788	ENSGT00390000017765.a.c	ENSGT00940000156043.fb.a	ENSGT00390000014424.i	ENSGT00950000182962.a.a.c.a	ENSGT00940000157443.d.a.a	ENSGT00550000074787.d.a.b.a	ENSGT00940000156558.a.b.a	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT00940000164731.i	ENSGT00940000167353	ENSGT00530000063666.b.db.g	ENSGT00950000183121.b.b.b.b.x.c	ENSGT00940000153430.a.a.j.a	ENSGT00530000063174.a.l.k #22	ENSGT00940000159370.f.a #29	ENSGT00390000008256.vd.a.b #28	ENSGT00950000182941.b.b.b.a.d.a #26	ENSGT00410000026585.b	ENSGT00940000176119	ENSGT00940000156285.`c	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028.j	ENSGT00390000004986.f	ENSGT00940000155053.c.b.a	ENSGT00940000160633.a.b.c	ENSGT00940000156040.f.a	ENSGT00940000163831.f.a	ENSGT00940000153716.A.l.b
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00950000182962.a.a.c.a	ENSGT00940000157443.d.a.a	ENSGT00550000074787.d.a.b.a	ENSGT00940000156558.a.b.a	ENSGT00940000165845.c.b	ENSGT00940000154826	ENSGT00940000164430.a.b.a.f	ENSGT01010000223723	ENSGT01050000244868.c.b.d	ENSGT00940000164731.i	ENSGT00940000167353	ENSGT00510000048637	ENSGT00530000063666.b.db.g	ENSGT00950000183121.b.b.b.b.x.c	ENSGT00940000153430.a.a.j.a	ENSGT00530000063174.a.l.k #22	ENSGT00940000159370.f.a #29	ENSGT00390000008256.vd.a.b #28	ENSGT00950000182941.b.b.b.a.d.a #26	ENSGT00410000026585.b	ENSGT00940000176119	ENSGT00940000156285.`c	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028.j	ENSGT00390000004986.f	ENSGT00940000155053.c.b.a	ENSGT00940000160633.a.b.c	ENSGT00940000156040.f.a	ENSGT00940000163831.f.a	ENSGT00940000153716.A.l.b
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00390000014424.i	ENSGT00950000182962.a.a.c.a	ENSGT00940000157443.d.a.a	ENSGT00550000074787.d.a.b.a	ENSGT00940000156558.a.b.a	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT01010000223723.b	ENSGT01050000244868.c.b.d	ENSGT00940000164731.i	ENSGT00940000167353	ENSGT00510000048637	ENSGT00530000063666.b.db.g	ENSGT00950000183121.b.b.b.b.x.c	ENSGT00940000153430.a.a.j.a	ENSGT00530000063174.a.l.k #22	ENSGT00940000159370.f.a #29	ENSGT00390000008256.vd.a.b #28	ENSGT00950000182941.b.b.b.a.d.a #26	ENSGT00410000026585.b	ENSGT00940000176119	ENSGT00940000156285.`c	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028.j	ENSGT00390000004986.f	ENSGT00940000155053.c.b.a	ENSGT00940000160633.a.b.c	ENSGT00940000156040.f.a	ENSGT00940000163831.f.a	ENSGT00940000153716.A.l.b
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000046622	ENSOMYG00000046614	ENSOMYG00000046593	ENSOMYG00000046574	ENSOMYG00000046568	ENSOMYG00000062831	ENSOMYG00000075578	ENSOMYG00000049093	zgc:153704 (ENSOMYG00000046553)	ENSOMYG00000046539	ENSOMYG00000046534	apooa (ENSOMYG00000046512)	sat1a.2 (ENSOMYG00000046499)	prdx4 (ENSOMYG00000046477)	ENSOMYG00000061963	ENSOMYG00000046451 #22	ENSOMYG00000046261 #29	ENSOMYG00000046191 #28	ENSOMYG00000062890	ENSOMYG00000046182	ENSOMYG00000046173	lipia (ENSOMYG00000046158)	ENSOMYG00000046149	ENSOMYG00000046102	poglut3 (ENSOMYG00000046072)	ccdc82 (ENSOMYG00000046058)	ENSOMYG00000046054	ARX (ENSOMYG00000046051)	pcyt1bb (ENSOMYG00000046046)	pdk3b (ENSOMYG00000046022)	ENSOMYG00000046015
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00390000014424.i	ENSGT00950000182962.a.a.c.a	ENSGT00940000157443.d.a.a	ENSGT00550000074787.d.a.b.a	ENSGT00940000156558.a.b.a	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT01010000223723.b	ENSGT01050000244868.c.b.d	ENSGT00940000164731.i	ENSGT00940000167353	ENSGT00510000048637	ENSGT00530000063666.b.db.g	ENSGT00950000183121.b.b.b.b.x.c	ENSGT00940000153430.a.a.j.a	ENSGT00530000063174.a.l.k #22	ENSGT00940000159370.f.a #29	ENSGT00390000008256.vd.a.b #28	ENSGT00950000182941.b.b.b.a.d.a #26	ENSGT00410000026585.b	ENSGT00940000156285.`c	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028.j	ENSGT00390000004986.f	ENSGT00940000155053.c.b.a	ENSGT00940000160633.a.b.c	ENSGT00940000156040.f.a	ENSGT00940000163831.f.a	ENSGT00940000153716.A.l.b	ENSGT00530000063529.A.f.a
Coho salmon	MODERN SPECIES	20	abhd10a (ENSOKIG00005045369)	mtif3 (ENSOKIG00005045400)	ENSOKIG00005045413	ENSOKIG00005045427	ENSOKIG00005045430	ATP6V1A (ENSOKIG00005045458)	ZDHHC23 (ENSOKIG00005045595)	ENSOKIG00005045601	ENSOKIG00005045605	zgc:153704 (ENSOKIG00005045615)	ENSOKIG00005045632	ENSOKIG00005045637	apooa (ENSOKIG00005045648)	sat1a.2 (ENSOKIG00005045694)	prdx4 (ENSOKIG00005045718)	pdha1a (ENSOKIG00005045792) #22	RPS6KA3 (ENSOKIG00005045963) #29	eif1axa (ENSOKIG00005048152) #28	map7d2a (ENSOKIG00005048175) #26	ENSOKIG00005048187	lipia (ENSOKIG00005048194)	ENSOKIG00005048247	poglut3 (ENSOKIG00005048418)	ccdc82 (ENSOKIG00005048477)	ENSOKIG00005048487	ENSOKIG00005048490	ARX (ENSOKIG00005048492)	pcyt1bb (ENSOKIG00005048497)	pdk3b (ENSOKIG00005048521)	ENSOKIG00005048634	zdhhc20a (ENSOKIG00005048640)
Chinook salmon	MODERN SPECIES	23	ENSOTSG00005010055	mtif3 (ENSOTSG00005010054)	WASF3 (ENSOTSG00005010052)	ENSOTSG00005010050	ATP6V1A (ENSOTSG00005009998)	ZDHHC23 (ENSOTSG00005009997)	ENSOTSG00005009994	cst14b.1 (ENSOTSG00005009993)	ENSOTSG00005009992	zgc:153704 (ENSOTSG00005009991)	ENSOTSG00005009990	CXorf58 (ENSOTSG00005009988)	apooa (ENSOTSG00005009986)	sat1a.2 (ENSOTSG00005009983)	prdx4 (ENSOTSG00005009977)	pdha1a (ENSOTSG00005009954) #22	rps6ka3b (ENSOTSG00005009564) #29	eif1axa (ENSOTSG00005009559) #28	si:ch211-114c12.2 (ENSOTSG00005009558)	lipia (ENSOTSG00005009556)	ENSOTSG00005009555	ENSOTSG00005008571	poglut3 (ENSOTSG00005008560)	ENSOTSG00005008559	ccdc82 (ENSOTSG00005008557)	ENSOTSG00005008555	ARX (ENSOTSG00005008553)	ENSOTSG00005008552	pcyt1bb (ENSOTSG00005008551)	PDK3 (ENSOTSG00005008549)	ENSOTSG00005008465
Salmo	ANCESTRAL SPECIES	18	ENSGT00940000156043.fb.a	ENSGT00390000014424.i	ENSGT00950000182962.a.a.c.a	ENSGT00940000157443.d.a.a	ENSGT00550000074787.d.a.b.a	ENSGT00940000156558.a.b.a	ENSGT00940000165845.c.b	ENSGT00940000155717	ENSGT01010000223723	ENSGT01050000244868.c.b.d	ENSGT00940000164731.i	ENSGT00940000167353	ENSGT00530000063666.b.db.g	ENSGT00950000183121.b.b.b.b.x.c	ENSGT00940000153430.a.a.j.a	ENSGT00530000063174.a.l.k #22	ENSGT00940000159370.f.a #29	ENSGT00390000008256.vd.b.a.b #28	ENSGT00950000182941.b.b.b.a.d.a #26	ENSGT00410000026585.b	ENSGT00940000156285.`c	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028.j	ENSGT00960000187413	ENSGT00390000004986.f	ENSGT00940000155053.c.b.a	ENSGT00940000160633.a.b.c	ENSGT00940000156040.f.a	ENSGT00940000163831.f.a	ENSGT00940000153716.A.l.b
River trout	MODERN SPECIES	10	ENSSTUG00000006920	mtif3 (ENSSTUG00000006915)	ENSSTUG00000006884	ENSSTUG00000006875	ATP6V1A (ENSSTUG00000006639)	zdhhc23a (ENSSTUG00000006620)	ENSSTUG00000006609	ENSSTUG00000006600	ENSSTUG00000006593	zgc:153704 (ENSSTUG00000006566)	ENSSTUG00000006558	ENSSTUG00000006552	ENSSTUG00000006545	apooa (ENSSTUG00000006457)	sat1a.2 (ENSSTUG00000006418)	pdha1a (ENSSTUG00000006251) #22	prdx4 (ENSSTUG00000006186)	RPS6KA3 (ENSSTUG00000005081) #29	ENSSTUG00000004974 #28	si:ch211-114c12.2 (ENSSTUG00000004961)	lipia (ENSSTUG00000004959)	ENSSTUG00000004942	ENSSTUG00000004658	ENSSTUG00000004625	ccdc82 (ENSSTUG00000004615)	ENSSTUG00000004595	ARX (ENSSTUG00000004586)	pcyt1bb (ENSSTUG00000004573)	pdk3b (ENSSTUG00000004513)	ENSSTUG00000004413	ENSSTUG00000003954
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000000638	mtif3 (ENSSSAG00000000645)	wasf3 (ENSSSAG00000000656)	ENSSSAG00000000669	ENSSSAG00000000691	ENSSSAG00000000746	ENSSSAG00000000752	cst14b.1 (ENSSSAG00000000759)	ENSSSAG00000004282	LIPO (ENSSSAG00000000779)	ENSSSAG00000089798	apooa (ENSSSAG00000000804)	ENSSSAG00000000794	sat1 (ENSSSAG00000000816)	prdx4 (ENSSSAG00000000827)	pdha1a (ENSSSAG00000000891) #22	ENSSSAG00000110485	RPS6KA3 (ENSSSAG00000001260) #29	IF1AX (ENSSSAG00000001669) #28	map7d2a (ENSSSAG00000001683) #26	ENSSSAG00000001701	lipia (ENSSSAG00000001715)	ENSSSAG00000001722	ENSSSAG00000001762	poglut3 (ENSSSAG00000093555)	ENSSSAG00000095586	ccd82 (ENSSSAG00000001805)	ENSSSAG00000001806	ARX (ENSSSAG00000001808)	pcyt1bb (ENSSSAG00000001810)	pdk3 (ENSSSAG00000001825)
Huchen	MODERN SPECIES	263										zgc:153704 (ENSHHUG00000050524)	ENSHHUG00000050521	ENSHHUG00000050519	apooa (ENSHHUG00000050512)	sat1a.2 (ENSHHUG00000050488)	prdx4 (ENSHHUG00000050428)	pdha1a (ENSHHUG00000050295) #22	rps6ka3b (ENSHHUG00000049279) #29	ENSHHUG00000049255 #28	ENSHHUG00000049253 #26	ENSHHUG00000049249 #26	ENSHHUG00000049244 #26	si:ch211-114c12.2 (ENSHHUG00000049241)	ENSHHUG00000049231	lipia (ENSHHUG00000049229)	ENSHHUG00000049222	ENSHHUG00000049211	ccdc82 (ENSHHUG00000049203)	ENSHHUG00000049199	ARX (ENSHHUG00000049184)	pcyt1bb (ENSHHUG00000049175)	pdk3b (ENSHHUG00000049112)
Salmoninae	ANCESTRAL SPECIES	156	ENSGT00940000159385.e.a	ENSGT00390000017765.a.d	ENSGT00940000156043.fb.b	ENSGT00390000014424.j	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c.b	ENSGT00940000157443.d.a.b	ENSGT00550000074787.d.a.b.b	ENSGT00940000156558.a.b.b	ENSGT01010000225766	ENSGT01050000244868.c.b.c	ENSGT00940000164731.j	ENSGT00530000063666.b.db.h	ENSGT00950000183121.b.b.b.b.x.d	ENSGT00940000153430.a.a.j.b	ENSGT00530000063174.a.l.l #22	ENSGT00940000159370.f.b #29	ENSGT00390000008256.vd.a.a #28	ENSGT00950000182941.b.b.b.a.d.b.b #26	ENSGT00950000182941.b.b.b.a.d.b.a.a #26	ENSGT00410000026585.a	ENSGT00940000156285.ac
Huchen	MODERN SPECIES	1542				mtif3 (ENSHHUG00000034079)	gtf3aa (ENSHHUG00000034069)	WASF3 (ENSHHUG00000034052)	ENSHHUG00000034051	ATP6V1A (ENSHHUG00000033987)	ZDHHC23 (ENSHHUG00000033976)	ENSHHUG00000033967	zgc:153704 (ENSHHUG00000033952)	ENSHHUG00000033915	apooa (ENSHHUG00000033890)	sat1a.2 (ENSHHUG00000033862)	prdx4 (ENSHHUG00000033768)	pdha1a (ENSHHUG00000033718) #22	RPS6KA3 (ENSHHUG00000032411) #29	eif1axa (ENSHHUG00000032245) #28	ENSHHUG00000032233 #26	ENSHHUG00000032228 #26	si:ch211-114c12.2 (ENSHHUG00000032218)	lipia (ENSHHUG00000032179)
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00390000017765.a.d	ENSGT00940000156043.fb.b	ENSGT00390000014424.j	ENSGT00940000155647.bb	ENSGT00990000208548	ENSGT01100000265679	ENSGT00950000182962.a.a.c.b	ENSGT00940000157443.d.a.b	ENSGT00550000074787.d.a.b.b	ENSGT00940000156558.a.b.b	ENSGT01050000244868.c.b.c	ENSGT00940000164731.j	ENSGT00530000063666.b.db.h	ENSGT00950000183121.b.b.b.b.x.d	ENSGT00940000153430.a.a.j.b	ENSGT00530000063174.a.l.l #22	ENSGT00940000159370.f.b #29	ENSGT00390000008256.vd.a.a #28	ENSGT00950000182941.b.b.b.a.d.b.b #26	ENSGT00950000182941.b.b.b.a.d.b.a.a #26	ENSGT00410000026585.a	ENSGT00940000156285.ac	ENSGT00940000159028.i	ENSGT00390000004986.e	ENSGT00940000155053.c.b.b	ENSGT00940000160633.a.b.d	ENSGT00940000156040.f.b	ENSGT00940000163831.f.b	ENSGT00940000153716.A.l.a	ENSGT00530000063529.A.f.b	ENSGT00940000156371.c.a.a.a
Salmo	ANCESTRAL SPECIES	1	ENSGT00390000014424.j	ENSGT00940000155647.bb	ENSGT00990000208548	ENSGT01100000265679	ENSGT00950000182962.a.a.c.b	ENSGT00940000157443.d.a.b	ENSGT00550000074787.d.a.b.b	ENSGT00940000156558.a.b.b	ENSGT01010000225766	ENSGT00990000214106	ENSGT01050000244868.c.b.c	ENSGT00940000164731.j	ENSGT00530000063666.b.db.h	ENSGT00950000183121.b.b.b.b.x.d	ENSGT00940000153430.a.a.j.b	ENSGT00530000063174.a.l.l #22	ENSGT00940000159370.f.b #29	ENSGT00390000008256.vd.a.a #28	ENSGT00950000182941.b.b.b.a.d.b.a.a #26	ENSGT00410000026585.a	ENSGT00940000156285.ac	ENSGT00940000159028.i	ENSGT00390000004986.e	ENSGT00940000155053.c.b.b	ENSGT00940000160633.a.b.d	ENSGT00940000156040.f.b	ENSGT00940000163831.f.b	ENSGT00940000153716.A.l.a	ENSGT00530000063529.A.f.b	ENSGT00940000156371.c.b.h	ENSGT00940000157542.f
Atlantic salmon	MODERN SPECIES	2	abhd10a (ENSSSAG00000121960)	ENSSSAG00000004488	mtif3 (ENSSSAG00000004479)	gtf3aa (ENSSSAG00000004473)	ENSSSAG00000004453	ENSSSAG00000004437	ENSSSAG00000004419	ENSSSAG00000004368	ENSSSAG00000004351	ENSSSAG00000004334	LIPO (ENSSSAG00000004300)	ENSSSAG00000104043	apooa (ENSSSAG00000004216)	SAT1 (ENSSSAG00000004180)	prdx4 (ENSSSAG00000079055)	ENSSSAG00000078097 #22	ENSSSAG00000078711 #29	ENSSSAG00000078668 #26	ENSSSAG00000113546	ENSSSAG00000107832	liph (ENSSSAG00000078034)	ENSSSAG00000111407	ENSSSAG00000113571	ENSSSAG00000110707	ENSSSAG00000078007	ENSSSAG00000001912	zdhhc20a (ENSSSAG00000077981)	ENSSSAG00000077973	ENSSSAG00000077954	ENSSSAG00000077939	ENSSSAG00000077931
River trout	MODERN SPECIES	3	gtf3aa (ENSSTUG00000047984)	ENSSTUG00000047980	ENSSTUG00000047969	WASF3 (ENSSTUG00000047954)	ENSSTUG00000047947	ATP6V1A (ENSSTUG00000047912)	ZDHHC23 (ENSSTUG00000047902)	ENSSTUG00000047893	ENSSTUG00000047884	zgc:153704 (ENSSTUG00000047848)	ENSSTUG00000047841	ENSSTUG00000047838	apooa (ENSSTUG00000047753)	sat1a.2 (ENSSTUG00000047743)	prdx4 (ENSSTUG00000047727)	pdha1a (ENSSTUG00000047190) #22	RPS6KA3 (ENSSTUG00000043357) #29	eif1axa (ENSSTUG00000043090) #28	ENSSTUG00000043071	map7d2a (ENSSTUG00000043021) #26	si:ch211-114c12.2 (ENSSTUG00000042998)	ENSSTUG00000042994	lipia (ENSSTUG00000042805)	poglut3 (ENSSTUG00000042684)	ccdc82 (ENSSTUG00000042622)	ENSSTUG00000042613	ARX (ENSSTUG00000042610)	pcyt1bb (ENSSTUG00000042576)	ENSSTUG00000042568	zdhhc20a (ENSSTUG00000042391)	ENSSTUG00000042359
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00390000017765.a.d	ENSGT00940000156043.fb.b	ENSGT00390000014424.j	ENSGT00940000155647.bb	ENSGT00990000208548	ENSGT01100000265679	ENSGT00950000182962.a.a.c.b	ENSGT00940000157443.d.a.b	ENSGT00550000074787.d.a.b.b	ENSGT00940000156558.a.b.b	ENSGT01050000244868.c.b.c	ENSGT00940000164731.j	ENSGT01000000220985	ENSGT00950000183121.b.b.b.b.x.d	ENSGT00940000153430.a.a.j.b	ENSGT00530000063174.a.l.l #22	ENSGT00940000159370.f.b #29	ENSGT00390000008256.vd.a.a #28	ENSGT00950000182941.b.b.b.a.d.b.b #26	ENSGT00410000026585.a	ENSGT00940000156285.ac	ENSGT00940000159028.i	ENSGT00390000004986.e	ENSGT00940000155053.c.b.b	ENSGT00940000160633.a.b.d	ENSGT00940000156040.f.b	ENSGT00940000163831.f.b	ENSGT00940000153716.A.l.a	ENSGT00530000063529.A.f.b	ENSGT00940000156371.c.a.a.a	ENSGT01100000263599
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT00390000017765.a.d	ENSGT00940000156043.fb.b	ENSGT00390000014424.j	ENSGT00940000155647.bb	ENSGT00990000208548	ENSGT01100000265679	ENSGT00950000182962.a.a.c.b	ENSGT00940000157443.d.a.b	ENSGT00550000074787.d.a.b.b	ENSGT00940000156558.a.b.b	ENSGT01050000244868.c.b.c	ENSGT00940000164731.j	ENSGT01000000220985	ENSGT00950000183121.b.b.b.b.x.d	ENSGT00940000153430.a.a.j.b	ENSGT00530000063174.a.l.l #22	ENSGT00940000159370.f.b #29	ENSGT00390000008256.vd.a.a #28	ENSGT00950000182941.b.b.b.a.d.b.b #26	ENSGT00410000026585.a	ENSGT00940000156285.ac	ENSGT00940000159028.i	ENSGT00390000004986.e	ENSGT00940000155053.c.b.b	ENSGT00940000160633.a.b.d	ENSGT00940000156040.f.b	ENSGT00940000163831.f.b	ENSGT00940000153716.A.l.a	ENSGT00530000063529.A.f.b	ENSGT01100000263599	ENSGT00940000156371.c.b.h
Coho salmon	MODERN SPECIES	21	GTF3A (ENSOKIG00005049517)	ENSOKIG00005049527	ENSOKIG00005049529	ENSOKIG00005049532	ENSOKIG00005049534	ENSOKIG00005049539	ENSOKIG00005038260	ENSOKIG00005038279	ATP6V1A (ENSOKIG00005038291)	zdhhc23a (ENSOKIG00005038336)	ENSOKIG00005038347	ENSOKIG00005038372	ENSOKIG00005038382	sat1a.2 (ENSOKIG00005038406)	prdx4 (ENSOKIG00005038438)	pdha1a (ENSOKIG00005038589) #22	RPS6KA3 (ENSOKIG00005040075) #29	eif1axa (ENSOKIG00005047158) #28	map7d2a (ENSOKIG00005047166) #26	si:ch211-114c12.2 (ENSOKIG00005047179)	LIPH (ENSOKIG00005047196)	poglut3 (ENSOKIG00005047223)	ccdc82 (ENSOKIG00005047248)	ENSOKIG00005047261	ARX (ENSOKIG00005047263)	pcyt1bb (ENSOKIG00005047268)	ENSOKIG00005047282	zdhhc20a (ENSOKIG00005047316)	ENSOKIG00005047563	ENSOKIG00005047582	ENSOKIG00005047604
Chinook salmon	MODERN SPECIES	26	ENSOTSG00005039054	ENSOTSG00005039056	KCNA10 (ENSOTSG00005039057)	ENSOTSG00005039060	GABRB3 (ENSOTSG00005039061)	ENSOTSG00005039062	ENSOTSG00005039063	ENSOTSG00005039065	ATP6V1A (ENSOTSG00005039067)	zdhhc23a (ENSOTSG00005039124)	zgc:153704 (ENSOTSG00005039127)	ENSOTSG00005039129	ENSOTSG00005039132	sat1a.2 (ENSOTSG00005039134)	prdx4 (ENSOTSG00005039157)	pdha1a (ENSOTSG00005039201) #22	ENSOTSG00005041602 #29	eif1axa (ENSOTSG00005047069) #28	si:ch211-114c12.2 (ENSOTSG00005047071)	lipia (ENSOTSG00005047072)	poglut3 (ENSOTSG00005047074)	ccdc82 (ENSOTSG00005047076)	ENSOTSG00005047077	ARX (ENSOTSG00005047078)	pcyt1bb (ENSOTSG00005047079)	ENSOTSG00005047080	zdhhc20a (ENSOTSG00005047082)	ENSOTSG00005047122	ENSOTSG00005047123	ENSOTSG00005047124	ENSOTSG00005047125
Rainbow trout	MODERN SPECIES	364	ENSOMYG00000050600	abhd10a (ENSOMYG00000073441)	ENSOMYG00000047338	gtf3aa (ENSOMYG00000047332)	ENSOMYG00000073889	ENSOMYG00000047324	ENSOMYG00000061723	ENSOMYG00000047313	ENSOMYG00000047295	ENSOMYG00000065609	cpi1 (ENSOMYG00000047292)	ENSOMYG00000047287	ENSOMYG00000047283	sat1a.2 (ENSOMYG00000047281)	prdx4 (ENSOMYG00000047262)	ENSOMYG00000047174 #22	ENSOMYG00000045445 #29	ENSOMYG00000045061 #28	ENSOMYG00000059861	ENSOMYG00000062398	ENSOMYG00000045045	ENSOMYG00000045031	ENSOMYG00000058284	ENSOMYG00000045028	ccdc82 (ENSOMYG00000045020)	ENSOMYG00000045013	ENSOMYG00000045011	pcyt1bb (ENSOMYG00000045009)	ENSOMYG00000045002	zdhhc20a (ENSOMYG00000044995)	ENSOMYG00000044990
Northern pike	MODERN SPECIES	6	abhd10a (ENSELUG00000021523)	ENSELUG00000000941	mtif3 (ENSELUG00000021487)	gtf3aa (ENSELUG00000021503)	ENSELUG00000021472	ENSELUG00000026117	ATP6V1A (ENSELUG00000021440)	ZDHHC23 (ENSELUG00000021421)	ENSELUG00000021414	zgc:153704 (ENSELUG00000021361)	ENSELUG00000021341	ENSELUG00000021334	apooa (ENSELUG00000028327)	sat1a.2 (ENSELUG00000021271)	prdx4 (ENSELUG00000021240)	pdha1a (ENSELUG00000021178) #22	RPS6KA3 (ENSELUG00000021143) #29	IF1AX (ENSELUG00000027786) #28	map7d2a (ENSELUG00000020985) #26	si:ch211-114c12.2 (ENSELUG00000020973)	lipia (ENSELUG00000020969)	ENSELUG00000020964	ENSELUG00000020928	ENSELUG00000031481	poglut3 (ENSELUG00000020802)	ENSELUG00000020782	ccdc82 (ENSELUG00000020768)	ENSELUG00000020759	ARX (ENSELUG00000020748)	pcyt1bb (ENSELUG00000020713)	pdk3b (ENSELUG00000020653)
Osteoglossiformes	ANCESTRAL SPECIES	203									ENSGT00390000001504.d	ENSGT00390000014424	ENSGT00940000154826	ENSGT01050000244868	ENSGT00940000164731.e	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x	ENSGT00530000063174.a.l #22	ENSGT00940000159370.a #29	ENSGT00940000156285	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028	ENSGT00390000004986	ENSGT00940000160633.c.b	ENSGT00940000156040.f	ENSGT01030000234646.B.a.b.bb	ENSGT00940000163831.g.a	ENSGT00940000153716.A.m	ENSGT00940000162182.d	ENSGT00940000156371.e.b	ENSGT01100000263825	ENSGT00940000153251.a
P. kingsleyae	MODERN SPECIES	323						ENSPKIG00000018532	ENSPKIG00000018545	pan3 (ENSPKIG00000018576)	ENSPKIG00000018655	mtif3 (ENSPKIG00000018672)	ENSPKIG00000018693	cst14a.1 (ENSPKIG00000018715)	ENSPKIG00000018747	ENSPKIG00000018826	sat1a.2 (ENSPKIG00000018924)	pdha1a (ENSPKIG00000018960) #22	RPS6KA3 (ENSPKIG00000019006) #29	ENSPKIG00000019062 #28	MAP7D2 (ENSPKIG00000019101) #26	lipia (ENSPKIG00000019149)	ENSPKIG00000019177	ENSPKIG00000019201	poglut3 (ENSPKIG00000019239)	ccdc82 (ENSPKIG00000019291)	ARX (ENSPKIG00000019352)	pcyt1bb (ENSPKIG00000019378)	slc51a (ENSPKIG00000019420)	ENSPKIG00000019456	PLCXD2 (ENSPKIG00000019482)	ENSPKIG00000019493	ENSPKIG00000019501
Asian bonytongue	MODERN SPECIES	18	srp54 (ENSSFOG00015013920)	sec23a (ENSSFOG00015013820)	clec14a (ENSSFOG00015013793)	ENSSFOG00015013788	pan3 (ENSSFOG00015013716)	ENSSFOG00015013695	ENSSFOG00015029601	ENSSFOG00015029480	cst14a.1 (ENSSFOG00015013664)	ptgdsb.1 (ENSSFOG00015013652)	ENSSFOG00015013578	klhl15 (ENSSFOG00015013554)	apooa (ENSSFOG00015013529)	sat1a.2 (ENSSFOG00015013511)	sat1b (ENSSFOG00015028647)	pdha1a (ENSSFOG00015013412) #22	pld6 (ENSSFOG00015013389)	RPS6KA3 (ENSSFOG00015013306) #29	ENSSFOG00015031058	ENSSFOG00015025700	ENSSFOG00015013214 #28	MAP7D2 (ENSSFOG00015013180) #26	lipia (ENSSFOG00015013156)	ENSSFOG00015013138	ENSSFOG00015012999	poglut3 (ENSSFOG00015012938)	ccdc82 (ENSSFOG00015012931)	ARX (ENSSFOG00015012891)	pcyt1bb (ENSSFOG00015012860)	PDK3 (ENSSFOG00015024813)	slc51a (ENSSFOG00015012778)
Spotted gar	MODERN SPECIES	669	ENSLOCG00000003211	CSTB (ENSLOCG00000003223)	mix23 (ENSLOCG00000003236)	fam162a (ENSLOCG00000003258)	KPNA1 (ENSLOCG00000003272)	c8g (ENSLOCG00000003306)	zgc:153704 (ENSLOCG00000003328)	ENSLOCG00000003347	eif2s3 (ENSLOCG00000003369)	klhl15 (ENSLOCG00000003383)	ENSLOCG00000003394	apooa (ENSLOCG00000003411)	sat1a.2 (ENSLOCG00000003427)	acot9.2 (ENSLOCG00000003460)	prdx4 (ENSLOCG00000003488)	pdha1b (ENSLOCG00000003508) #22	MAP3K15 (ENSLOCG00000003527) #23	SH3KBP1 (ENSLOCG00000003567) #24	ENSLOCG00000003591	MAP7D2 (ENSLOCG00000003609) #26	eif1axa (ENSLOCG00000003622) #28	rps6ka3a (ENSLOCG00000003638) #29	CNKSR2 (ENSLOCG00000003669) #32	KLHL34 (ENSLOCG00000003725)	smpx (ENSLOCG00000003737) #33	mbtps2 (ENSLOCG00000003747) #34	sms (ENSLOCG00000003761) #36	phex (ENSLOCG00000003780) #37	PTCHD1 (ENSLOCG00000003811)	ENSLOCG00000003837	ENSLOCG00000003856
Reedfish	MODERN SPECIES	12	ENSECRG00000007553	ENSECRG00000007531	ENSECRG00000007521	TMPRSS7 (ENSECRG00000007492)	TAGLN3 (ENSECRG00000007472)	ENSECRG00000007451	tagln3b (ENSECRG00000007431)	PHLDB2 (ENSECRG00000007400)	ENSECRG00000007373	PLCXD2 (ENSECRG00000007358)	ENSECRG00000007340	CIP2A (ENSECRG00000007313)	ENSECRG00000007247	gabrr3a (ENSECRG00000007203)	ADGRG2 (ENSECRG00000007164) #21	pdha1b (ENSECRG00000007129) #22	MAP3K15 (ENSECRG00000007105) #23	ENSECRG00000007088	SH3KBP1 (ENSECRG00000006955) #24	BCLAF3 (ENSECRG00000006913)	MAP7D2 (ENSECRG00000006666) #26	eif1axa (ENSECRG00000006607) #28	rps6ka3a (ENSECRG00000006272) #29	CNKSR2 (ENSECRG00000006154) #32	KLHL34 (ENSECRG00000006129)	smpx (ENSECRG00000006111) #33	mbtps2 (ENSECRG00000006093) #34	sms (ENSECRG00000006084) #36	phex (ENSECRG00000006068) #37	ENSECRG00000006057	prdx4 (ENSECRG00000006048)
Elephant shark	MODERN SPECIES	1505	cdkl5 (ENSCMIG00000010376) #16	SCML2 (ENSCMIG00000010381)	RAI2 (ENSCMIG00000010388) #14	ENSCMIG00000010390 #15	ENSCMIG00000010392 #15	NHS (ENSCMIG00000010394) #13	ENSCMIG00000010398 #12	ENSCMIG00000010435 #11	txlng (ENSCMIG00000010483) #10	syap1 (ENSCMIG00000010525) #9	ENSCMIG00000010564	ENSCMIG00000010612 #7	GRPR (ENSCMIG00000010665)	ENSCMIG00000010667 #21	ENSCMIG00000010668	pdha1 (ENSCMIG00000010699) #22	ENSCMIG00000010815 #23	ENSCMIG00000010872 #23	ENSCMIG00000010956 #26	ENSCMIG00000010970	ENSCMIG00000010973	SH3KBP1 (ENSCMIG00000010981) #24	eif1axb (ENSCMIG00000011013) #28	rps6ka3a (ENSCMIG00000011158) #29	ENSCMIG00000011304	ARHGAP6 (ENSCMIG00000011315)	MID1 (ENSCMIG00000011336)	ENSCMIG00000011374	clcn4 (ENSCMIG00000011514)	wwc3 (ENSCMIG00000011874)	cldn26 (ENSCMIG00000011920)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00530000063174.a #22
Hagfish	MODERN SPECIES	259										ENSEBUG00000008818	ENSEBUG00000012901	ENSEBUG00000011707	CDK19 (ENSEBUG00000014909)	ENSEBUG00000012398	ENSEBUG00000000662 #36	pdha1b (ENSEBUG00000007453) #22	atp5po (ENSEBUG00000007644)	ENSEBUG00000013516	ENSEBUG00000005097	snx12 (ENSEBUG00000012681)	ENSEBUG00000005106	eif1axb (ENSEBUG00000008167) #28	ENSEBUG00000008114	ENSEBUG00000017010	ttc36 (ENSEBUG00000002022)	ENSEBUG00000010050	inpp5f (ENSEBUG00000011641)	inaa (ENSEBUG00000015246)	ENSEBUG00000000421	ENSEBUG00000004689