Mammalia	ANCESTRAL SPECIES																	ENSGT00390000008610.a.b.a.b #22
Theria	ANCESTRAL SPECIES	15	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00940000169601	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Primates	ANCESTRAL SPECIES		ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Haplorrhini	ANCESTRAL SPECIES		ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Simiiformes	ANCESTRAL SPECIES		ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.a.a #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.a.a #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT00390000013347.b.b	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048.b #15	ENSGT00440000038181.eb.a.a.b #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT00390000013347.b.b	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Vervet Monkey	MODERN SPECIES		PPME1 (ENSCSAG00000004025) #7	P4HA3 (ENSCSAG00000004019) #8	PGM2L1 (ENSCSAG00000004011) #9	KCNE3 (ENSCSAG00000000622) #10	LIPT2 (ENSCSAG00000004004) #11	ENSCSAG00000004000 #12	CHRDL2 (ENSCSAG00000003992) #13	RNF169 (ENSCSAG00000003988) #14	XRRA1 (ENSCSAG00000003983) #15	ENSCSAG00000003967 #16	NEU3 (ENSCSAG00000003960) #17	OR2AT4 (ENSCSAG00000000621) #18	SLCO2B1 (ENSCSAG00000003953) #19	TPBGL (ENSCSAG00000000620) #20	ARRB1 (ENSCSAG00000003950) #21	RPS3 (ENSCSAG00000003937) #22	ENSCSAG00000000619 #23	ENSCSAG00000003917 #24	GDPD5 (ENSCSAG00000003915) #25	SERPINH1 (ENSCSAG00000003909) #26	MAP6 (ENSCSAG00000003908) #27	MOGAT2 (ENSCSAG00000003906) #28	DGAT2 (ENSCSAG00000003904) #29	UVRAG (ENSCSAG00000003902) #30	WNT11 (ENSCSAG00000003899) #31	THAP12 (ENSCSAG00000003894) #32	EMSY (ENSCSAG00000003885) #33	LRRC32 (ENSCSAG00000003880) #34	TSKU (ENSCSAG00000000618) #35	ACER3 (ENSCSAG00000003878) #36	B3GNT6 (ENSCSAG00000000617) #37
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000006450 #11	ENSGT00940000166824	ENSGT00390000018145.cb.a.a.b.a	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048.b #15	ENSGT00440000038181.eb.a.a.b #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT00390000013347.b.b	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00510000046985.h.b.a.b	ENSGT00390000006485.c #23	ENSGT00910000146972	ENSGT00390000008610.a.a ##22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.d #32	ENSGT00440000033232.d
Macaca	ANCESTRAL SPECIES	3	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00940000153095.g.b.a.a.a.b.a.a.b	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000008610.a.b.a.b #22	ENSGT00510000046985.h.b.a.b	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000162732	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344	ENSGT00940000156032	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000158874	ENSGT00390000008932.c.a.a	ENSGT00390000008932.c.b
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000155427	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00940000153095.g.b.a.a.a.b.a.a.b	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000008610.a.b.a.b #22	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000162732	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344	ENSGT00940000156032	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000158874	ENSGT00390000008932.c.a.a	ENSGT00390000008932.c.b	ENSGT00390000008932.c.a.b
Rhesus	MODERN SPECIES	5	LIPT2 (ENSMMUG00000013094) #11	ENSMMUG00000013093	POLD3 (ENSMMUG00000020643) #12	CHRDL2 (ENSMMUG00000020644) #13	RNF169 (ENSMMUG00000052870) #14	XRRA1 (ENSMMUG00000021039) #15	SPCS2 (ENSMMUG00000010685) #16	NEU3 (ENSMMUG00000010686) #17	ENSMMUG00000064190	SLCO2B1 (ENSMMUG00000009126) #19	OR2AT4 (ENSMMUG00000010688) #18	ENSMMUG00000047594	TPBGL (ENSMMUG00000045580) #20	ARRB1 (ENSMMUG00000017529) #21	ENSMMUG00000060246	RPS3 (ENSMMUG00000009019) #22	KLHL35 (ENSMMUG00000063403) #24	GDPD5 (ENSMMUG00000009022) #25	SERPINH1 (ENSMMUG00000007675) #26	MAP6 (ENSMMUG00000007676) #27	MOGAT2 (ENSMMUG00000000506) #28	DGAT2 (ENSMMUG00000000185) #29	UVRAG (ENSMMUG00000000187) #30	WNT11 (ENSMMUG00000051614) #31	THAP12 (ENSMMUG00000048604) #32	GVQW3 (ENSMMUG00000059619)	EMSY (ENSMMUG00000022401) #33	LRRC32 (ENSMMUG00000022403) #34	TSKU (ENSMMUG00000058889) #35	ACER3 (ENSMMUG00000018168) #36	ENSMMUG00000050497
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000050405	ENSMFAG00000040646	NXPH1 (ENSMFAG00000032515)	ICA1 (ENSMFAG00000046093)	GLCCI1 (ENSMFAG00000038435)	UMAD1 (ENSMFAG00000052878)	ENSMFAG00000042056	MIOS (ENSMFAG00000034560)	COL28A1 (ENSMFAG00000000186)	ENSMFAG00000053535	C1GALT1 (ENSMFAG00000031532)	ENSMFAG00000055818	ASNS (ENSMFAG00000041092)	TAC1 (ENSMFAG00000000287)	ENSMFAG00000057765	ENSMFAG00000046006 #22	ENSMFAG00000030531	DLX5 (ENSMFAG00000035900)	DLX6 (ENSMFAG00000048863)	ENSMFAG00000001022	ENSMFAG00000045122	SLC25A13 (ENSMFAG00000037896)	ENSMFAG00000007583	DYNC1I1 (ENSMFAG00000000094)	PDK4 (ENSMFAG00000035180)	ASB4 (ENSMFAG00000041748)	PON2 (ENSMFAG00000001162)	PON3 (ENSMFAG00000038783)	PON1 (ENSMFAG00000035691)	ENSMFAG00000055174	ENSMFAG00000062513
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	272	SLC28A3 (ENSMNEG00000036156)	NTRK2 (ENSMNEG00000029886)	AGTPBP1 (ENSMNEG00000027437)	ENSMNEG00000031442	NAA35 (ENSMNEG00000020190)	GOLM1 (ENSMNEG00000044908)	ENSMNEG00000028422	ISCA1 (ENSMNEG00000030750)	TUT7 (ENSMNEG00000031427)	GAS1 (ENSMNEG00000010226)	ENSMNEG00000043846	DAPK1 (ENSMNEG00000044385)	CTSL (ENSMNEG00000042546)	ENSMNEG00000032591	CDK20 (ENSMNEG00000034650)	ENSMNEG00000043228 #22	ENSMNEG00000014068	SPIN1 (ENSMNEG00000038251)	NXNL2 (ENSMNEG00000014676)	ENSMNEG00000037607	ENSMNEG00000031176	S1PR3 (ENSMNEG00000007167)	ENSMNEG00000018696	SHC3 (ENSMNEG00000036450)	CKS2 (ENSMNEG00000032033)	SECISBP2 (ENSMNEG00000031737)	SEMA4D (ENSMNEG00000033475)	GADD45G (ENSMNEG00000042753)	ENSMNEG00000012312	DIRAS2 (ENSMNEG00000003176)	SYK (ENSMNEG00000037700)
Pig-tailed macaque	MODERN SPECIES	534	PHF14 (ENSMNEG00000031850)	ENSMNEG00000030955	ENSMNEG00000029668	NXPH1 (ENSMNEG00000039744)	ICA1 (ENSMNEG00000044278)	GLCCI1 (ENSMNEG00000040369)	ENSMNEG00000032658	UMAD1 (ENSMNEG00000044071)	RPA3 (ENSMNEG00000044584)	MIOS (ENSMNEG00000036023)	COL28A1 (ENSMNEG00000035662)	C1GALT1 (ENSMNEG00000029681)	ENSMNEG00000031471	ASNS (ENSMNEG00000043217)	TAC1 (ENSMNEG00000040665)	ENSMNEG00000030799 #22	ENSMNEG00000031425	DLX5 (ENSMNEG00000021136)	DLX6 (ENSMNEG00000041272)	ENSMNEG00000029391	ENSMNEG00000045375	ENSMNEG00000045345	SLC25A13 (ENSMNEG00000031032)	DYNC1I1 (ENSMNEG00000040261)	PDK4 (ENSMNEG00000042419)	ASB4 (ENSMNEG00000034621)	PON2 (ENSMNEG00000037066)	PON1 (ENSMNEG00000041009)	PPP1R9A (ENSMNEG00000036491)	PEG10 (ENSMNEG00000037924)	SGCE (ENSMNEG00000044499)
Cercopithecinae_b	ANCESTRAL SPECIES	32	ENSGT00390000006450 #11	ENSGT00940000166824	ENSGT00390000018145.cb.a.a.b.a	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048.b #15	ENSGT00440000038181.eb.a.a.b #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT00390000013347.b.b	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00390000006485.c #23	ENSGT00910000146972	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.d #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33
Olive baboon	MODERN SPECIES	3	ENSPANG00000034020	ENSPANG00000040935	ENSPANG00000051353	ENSPANG00000014355 #12	ENSPANG00000045204 #11	ENSPANG00000050947 #10	ENSPANG00000037679 ##15	ENSPANG00000049173	ENSPANG00000034355 #16	ENSPANG00000010014 #17	ENSPANG00000048808	ENSPANG00000042782 #18	SLCO2B1 (ENSPANG00000005995) #19	TPBGL (ENSPANG00000050172) #20	ARRB1 (ENSPANG00000011945) #21	RPS3 (ENSPANG00000016549) #22	KLHL35 (ENSPANG00000033783) #24	ENSPANG00000042578	GDPD5 (ENSPANG00000011141) #25	SERPINH1 (ENSPANG00000033081) #26	MAP6 (ENSPANG00000048934) #27	MOGAT2 (ENSPANG00000008371) #28	DGAT2 (ENSPANG00000005994) #29	UVRAG (ENSPANG00000012471) #30	WNT11 (ENSPANG00000014353) #31	ENSPANG00000003101 #32	ENSPANG00000007883	EMSY (ENSPANG00000007638) #33	LRRC32 (ENSPANG00000015382) #34	ENSPANG00000049669	TSKU (ENSPANG00000018404) #35
Cercopithecinae_d	ANCESTRAL SPECIES	27	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00390000018145.cb.a.a.b.a	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048.b #15	ENSGT00440000038181.eb.a.a.b #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT00390000013347.b.b	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00390000006485.c #23	ENSGT00910000146972	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.d #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33
Drill	DUPLICATION
Drill	MODERN SPECIES	500								ENSMLEG00000042000	C9orf153 (ENSMLEG00000013492)	ISCA1 (ENSMLEG00000038112)	TUT7 (ENSMLEG00000027049)	DAPK1 (ENSMLEG00000033258)	CTSL (ENSMLEG00000036785)	ENSMLEG00000035282	CDK20 (ENSMLEG00000035229)	ENSMLEG00000044314 #22	ENSMLEG00000000797	SPIN1 (ENSMLEG00000035080)	NXNL2 (ENSMLEG00000033545)	ENSMLEG00000010964	S1PR3 (ENSMLEG00000028481)	SHC3 (ENSMLEG00000004268)	CKS2 (ENSMLEG00000035685)	SECISBP2 (ENSMLEG00000028868)	SEMA4D (ENSMLEG00000037083)	ENSMLEG00000037750	GADD45G (ENSMLEG00000031770)
Drill	MODERN SPECIES	472						ICA1 (ENSMLEG00000044079)	GLCCI1 (ENSMLEG00000040012)	UMAD1 (ENSMLEG00000042525)	RPA3 (ENSMLEG00000036302)	MIOS (ENSMLEG00000037819)	COL28A1 (ENSMLEG00000015407)	C1GALT1 (ENSMLEG00000044453)	ENSMLEG00000032398	ASNS (ENSMLEG00000028862)	TAC1 (ENSMLEG00000040054)	ENSMLEG00000017301 #22	SDHAF3 (ENSMLEG00000037669)	DLX5 (ENSMLEG00000036746)	DLX6 (ENSMLEG00000025971)	ENSMLEG00000039568	ENSMLEG00000036598	ENSMLEG00000033727	SLC25A13 (ENSMLEG00000038932)	DYNC1I1 (ENSMLEG00000042478)	PDK4 (ENSMLEG00000037032)	ASB4 (ENSMLEG00000036931)	PON2 (ENSMLEG00000027200)	PON3 (ENSMLEG00000036159)	PON1 (ENSMLEG00000035189)	PPP1R9A (ENSMLEG00000043621)	PEG10 (ENSMLEG00000035418)
Drill	MODERN SPECIES	1404								ENSMLEG00000036513 ##15	ENSMLEG00000037619 #16	NEU3 (ENSMLEG00000036085) #17	ENSMLEG00000028250	OR2AT4 (ENSMLEG00000028367) #18	SLCO2B1 (ENSMLEG00000040970) #19	ARRB1 (ENSMLEG00000038818) #21	ENSMLEG00000001141 #23	RPS3 (ENSMLEG00000027047) #22	ENSMLEG00000029117 #24	GDPD5 (ENSMLEG00000038219) #25	SERPINH1 (ENSMLEG00000029842) #26	MAP6 (ENSMLEG00000003608) #27	MOGAT2 (ENSMLEG00000031977) #28	DGAT2 (ENSMLEG00000043052) #29	UVRAG (ENSMLEG00000043625) #30
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	629	ENSCATG00000000743	NTRK2 (ENSCATG00000040423)	AGTPBP1 (ENSCATG00000044576)	ENSCATG00000001301	NAA35 (ENSCATG00000042793)	ENSCATG00000033608	C9orf153 (ENSCATG00000042082)	ISCA1 (ENSCATG00000042807)	TUT7 (ENSCATG00000032888)	GAS1 (ENSCATG00000011030)	ENSCATG00000042393	DAPK1 (ENSCATG00000033936)	CTSL (ENSCATG00000044799)	ENSCATG00000010556	CDK20 (ENSCATG00000016899)	ENSCATG00000011713 #22	ENSCATG00000016774	SPIN1 (ENSCATG00000030976)	NXNL2 (ENSCATG00000038968)	ENSCATG00000030800	ENSCATG00000022256	S1PR3 (ENSCATG00000005549)	SHC3 (ENSCATG00000043648)	CKS2 (ENSCATG00000036628)	SECISBP2 (ENSCATG00000008304)	SEMA4D (ENSCATG00000044690)	ENSCATG00000012439	GADD45G (ENSCATG00000041187)
Sooty mangabey	MODERN SPECIES	185		ENSCATG00000044948	NXPH1 (ENSCATG00000037000)	ICA1 (ENSCATG00000043201)	GLCCI1 (ENSCATG00000044892)	ENSCATG00000030314	UMAD1 (ENSCATG00000033366)	RPA3 (ENSCATG00000028204)	MIOS (ENSCATG00000011011)	ENSCATG00000001666	COL28A1 (ENSCATG00000031059)	C1GALT1 (ENSCATG00000030704)	ENSCATG00000043335	ASNS (ENSCATG00000038317)	TAC1 (ENSCATG00000034795)	ENSCATG00000043998 #22	ENSCATG00000032188	DLX5 (ENSCATG00000044853)	DLX6 (ENSCATG00000036157)	ENSCATG00000041545	ENSCATG00000014825	ENSCATG00000037610	SLC25A13 (ENSCATG00000029550)	DYNC1I1 (ENSCATG00000037835)	PDK4 (ENSCATG00000031905)	ASB4 (ENSCATG00000029891)	PON2 (ENSCATG00000030239)	PON3 (ENSCATG00000033359)	ENSCATG00000039956	PON1 (ENSCATG00000034334)	PPP1R9A (ENSCATG00000039595)
Sooty mangabey	MODERN SPECIES	545	PGM2L1 (ENSCATG00000029770) #9	LIPT2 (ENSCATG00000029187) #11	ENSCATG00000000611	ENSCATG00000043513 #12	CHRDL2 (ENSCATG00000018972) #13	RNF169 (ENSCATG00000043238) #14	XRRA1 (ENSCATG00000039406) #15	ENSCATG00000039999 #16	NEU3 (ENSCATG00000029743) #17	ENSCATG00000019868	OR2AT4 (ENSCATG00000009927) #18	ENSCATG00000029708	SLCO2B1 (ENSCATG00000028037) #19	TPBGL (ENSCATG00000010167) #20	ARRB1 (ENSCATG00000039690) #21	RPS3 (ENSCATG00000035348) #22	KLHL35 (ENSCATG00000042763) #24	ENSCATG00000041303	GDPD5 (ENSCATG00000030069) #25	SERPINH1 (ENSCATG00000043530) #26	MAP6 (ENSCATG00000044768) #27	MOGAT2 (ENSCATG00000038955) #28	DGAT2 (ENSCATG00000001407) #29	UVRAG (ENSCATG00000039451) #30	WNT11 (ENSCATG00000035881) #31	THAP12 (ENSCATG00000024587) #32	GVQW3 (ENSCATG00000035253)	ENSCATG00000006180	EMSY (ENSCATG00000033145) #33	LRRC32 (ENSCATG00000039757) #34	TSKU (ENSCATG00000018628) #35
Rhinopithecus	ANCESTRAL SPECIES	21	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000166824	ENSGT00390000018145.cb.a.a.b.a	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.a.a #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT00390000013347.b.b	ENSGT01080000257336.a.c.a #19	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b.a
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	800											AVPR1A (ENSRBIG00000033091)	ENSRBIG00000032503	PPM1H (ENSRBIG00000013892)	MON2 (ENSRBIG00000037597)	USP15 (ENSRBIG00000042747)	ENSRBIG00000012001 #22	FSHR (ENSRBIG00000033914)
Black snub-nosed monkey	MODERN SPECIES	775	PGM2L1 (ENSRBIG00000043298) #9	LIPT2 (ENSRBIG00000031912) #11	ENSRBIG00000001091	ENSRBIG00000011853	ENSRBIG00000044531 #12	CHRDL2 (ENSRBIG00000028182) #13	RNF169 (ENSRBIG00000035895) #14	XRRA1 (ENSRBIG00000036115) #15	ENSRBIG00000011964 ##16	NEU3 (ENSRBIG00000040960) #17	ENSRBIG00000043933	OR2AT4 (ENSRBIG00000036161) #18	ENSRBIG00000037921	SLCO2B1 (ENSRBIG00000035476) #19	ARRB1 (ENSRBIG00000041523) #21	RPS3 (ENSRBIG00000044916) #22	KLHL35 (ENSRBIG00000036873) #24	GDPD5 (ENSRBIG00000037527) #25	SERPINH1 (ENSRBIG00000028537) #26	MAP6 (ENSRBIG00000032932) #27
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1304	LIPT2 (ENSRROG00000044982) #11	ENSRROG00000018216	ENSRROG00000040083	ENSRROG00000031930	ENSRROG00000041045 #12	CHRDL2 (ENSRROG00000029406) #13	RNF169 (ENSRROG00000034271) #14	XRRA1 (ENSRROG00000038284) #15	ENSRROG00000009662 #16	NEU3 (ENSRROG00000029086) #17	ENSRROG00000007318	OR2AT4 (ENSRROG00000042697) #18	ENSRROG00000038845	SLCO2B1 (ENSRROG00000029185) #19	ARRB1 (ENSRROG00000037258) #21	RPS3 (ENSRROG00000009870) #22	KLHL35 (ENSRROG00000042922) #24	GDPD5 (ENSRROG00000032119) #25	SERPINH1 (ENSRROG00000034821) #26	ENSRROG00000033527 #27	MOGAT2 (ENSRROG00000018289) #28	DGAT2 (ENSRROG00000029306) #29	UVRAG (ENSRROG00000038883) #30	WNT11 (ENSRROG00000031068) #31	THAP12 (ENSRROG00000026238) #32	GVQW3 (ENSRROG00000043820)	ENSRROG00000020533	EMSY (ENSRROG00000039855) #33	LRRC32 (ENSRROG00000028668) #34	TSKU (ENSRROG00000032131) #35	ENSRROG00000012645
Golden snub-nosed monkey	MODERN SPECIES	659																ENSRROG00000032977 #22	MEOX2 (ENSRROG00000035547)	AGMO (ENSRROG00000034789)	DGKB (ENSRROG00000043927)	ENSRROG00000030221
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.b ##16	ENSGT00950000182944.A #17	ENSGT00940000162049.q	ENSGT00940000163113 #18	ENSGT00940000162049.r	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.a #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.b ##16	ENSGT00950000182944.A #17	ENSGT00940000162049.q	ENSGT00940000163113 #18	ENSGT00940000162049.r	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.a #32	ENSGT00440000033232.d	ENSGT00910000147490	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Orangutan	MODERN SPECIES	2	PPME1 (ENSPPYG00000003671) #7	P4HA3 (ENSPPYG00000003673) #8	PGM2L1 (ENSPPYG00000003674) #9	KCNE3 (ENSPPYG00000003675) #10	LIPT2 (ENSPPYG00000003676) #11	POLD3 (ENSPPYG00000003677)	CHRDL2 (ENSPPYG00000003678) #13	RNF169 (ENSPPYG00000003680) #14	XRRA1 (ENSPPYG00000003681) #15	ENSPPYG00000034798	SPCS2 (ENSPPYG00000003682) ##16	NEU3 (ENSPPYG00000033538) #17	SLCO2B1 (ENSPPYG00000003684) #19	TPBGL (ENSPPYG00000003686) #20	ARRB1 (ENSPPYG00000039190) #21	RPS3 (ENSPPYG00000003688) #22	KLHL35 (ENSPPYG00000003689) #24	GDPD5 (ENSPPYG00000003690) #25	SERPINH1 (ENSPPYG00000003691) #26	MAP6 (ENSPPYG00000003692) #27	MOGAT2 (ENSPPYG00000003693) #28	DGAT2 (ENSPPYG00000003694) #29	UVRAG (ENSPPYG00000003695) #30	WNT11 (ENSPPYG00000003696) #31	ENSPPYG00000040892	THAP12 (ENSPPYG00000003697) #32	ENSPPYG00000003698	EMSY (ENSPPYG00000003699) #33	LRRC32 (ENSPPYG00000003700) #34	TSKU (ENSPPYG00000003702) #35	ACER3 (ENSPPYG00000003703) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.b ##16	ENSGT00950000182944.A #17	ENSGT00940000162049.q	ENSGT00940000163113 #18	ENSGT00940000162049.r	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.a #32	ENSGT00440000033232.d	ENSGT00390000009554.o #33	ENSGT00910000147490	ENSGT00390000009554.p #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35
Gorilla	MODERN SPECIES	2	C2CD3 (ENSGGOG00000000345)	PPME1 (ENSGGOG00000000347) #7	P4HA3 (ENSGGOG00000007853) #8	PGM2L1 (ENSGGOG00000007865) #9	KCNE3 (ENSGGOG00000041355) #10	ENSGGOG00000005892 #11	POLD3 (ENSGGOG00000012878)	CHRDL2 (ENSGGOG00000012629) #13	RNF169 (ENSGGOG00000014493) #14	XRRA1 (ENSGGOG00000014505) #15	SPCS2 (ENSGGOG00000014500) ##16	NEU3 (ENSGGOG00000014507) #17	OR2AT4 (ENSGGOG00000023922) #18	SLCO2B1 (ENSGGOG00000007327) #19	ARRB1 (ENSGGOG00000009699) #21	RPS3 (ENSGGOG00000006519) #22	KLHL35 (ENSGGOG00000015839) #24	GDPD5 (ENSGGOG00000015848) #25	SERPINH1 (ENSGGOG00000005397) #26	MAP6 (ENSGGOG00000005400) #27	DGAT2 (ENSGGOG00000002910) #29	UVRAG (ENSGGOG00000002911) #30	WNT11 (ENSGGOG00000015024) #31	THAP12 (ENSGGOG00000006152) #32	GVQW3 (ENSGGOG00000027994)	EMSY (ENSGGOG00000012926) #33	LRRC32 (ENSGGOG00000001727) #34	TSKU (ENSGGOG00000008670) #35	ACER3 (ENSGGOG00000003818) #36	B3GNT6 (ENSGGOG00000000016) #37	CAPN5 (ENSGGOG00000008071)
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.b ##16	ENSGT00950000182944.A #17	ENSGT00940000162049.q	ENSGT00940000163113 #18	ENSGT00940000162049.r	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.a #32	ENSGT00440000033232.d	ENSGT00390000009554.o #33	ENSGT00910000147490	ENSGT00390000009554.p #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35
Human	MODERN SPECIES	2	PPME1 (ENSG00000214517) #7	P4HA3 (ENSG00000149380) #8	PGM2L1 (ENSG00000165434) #9	KCNE3 (ENSG00000175538) #10	LIPT2 (ENSG00000175536) #11	POLD3 (ENSG00000077514)	CHRDL2 (ENSG00000054938) #13	RNF169 (ENSG00000166439) #14	XRRA1 (ENSG00000166435) #15	SPCS2 (ENSG00000118363) ##16	NEU3 (ENSG00000162139) #17	OR2AT4 (ENSG00000171561) #18	SLCO2B1 (ENSG00000137491) #19	TPBGL (ENSG00000261594) #20	ARRB1 (ENSG00000137486) #21	RPS3 (ENSG00000149273) #22	KLHL35 (ENSG00000149243) #24	GDPD5 (ENSG00000158555) #25	SERPINH1 (ENSG00000149257) #26	MAP6 (ENSG00000171533) #27	MOGAT2 (ENSG00000166391) #28	DGAT2 (ENSG00000062282) #29	UVRAG (ENSG00000198382) #30	WNT11 (ENSG00000085741) #31	THAP12 (ENSG00000137492) #32	GVQW3 (ENSG00000179240)	EMSY (ENSG00000158636) #33	LRRC32 (ENSG00000137507) #34	TSKU (ENSG00000182704) #35	ACER3 (ENSG00000078124) #36	B3GNT6 (ENSG00000198488) #37
Pan	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181.eb.b ##16	ENSGT00950000182944.A #17	ENSGT00940000162049.q	ENSGT00940000163113 #18	ENSGT00940000162049.r	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163.e #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.y.a.a #32	ENSGT00440000033232.d	ENSGT00390000009554.o #33	ENSGT00910000147490	ENSGT00390000009554.p #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35
Bonobo	MODERN SPECIES	2	PGM2L1 (ENSPPAG00000029213) #9	KCNE3 (ENSPPAG00000022031) #10	LIPT2 (ENSPPAG00000034746) #11	POLD3 (ENSPPAG00000042261)	CHRDL2 (ENSPPAG00000028622) #13	RNF169 (ENSPPAG00000020912) #14	XRRA1 (ENSPPAG00000041615) #15	ENSPPAG00000043856	SPCS2 (ENSPPAG00000030175) ##16	NEU3 (ENSPPAG00000040988) #17	ENSPPAG00000042780	OR2AT4 (ENSPPAG00000043903) #18	ENSPPAG00000015262	SLCO2B1 (ENSPPAG00000031133) #19	ARRB1 (ENSPPAG00000040868) #21	RPS3 (ENSPPAG00000029211) #22	KLHL35 (ENSPPAG00000010945) #24	GDPD5 (ENSPPAG00000042473) #25	ENSPPAG00000041483 #26	ENSPPAG00000040024 #27	MOGAT2 (ENSPPAG00000012175) #28	DGAT2 (ENSPPAG00000015345) #29	UVRAG (ENSPPAG00000027735) #30	WNT11 (ENSPPAG00000010959) #31	ENSPPAG00000030327	ENSPPAG00000038460 #33	ENSPPAG00000028053	THAP12 (ENSPPAG00000005479) #32	ENSPPAG00000027471 #33	LRRC32 (ENSPPAG00000028327) #34	TSKU (ENSPPAG00000025259) #35
Chimpanzee	MODERN SPECIES	2	PGM2L1 (ENSPTRG00000004064) #9	KCNE3 (ENSPTRG00000038909) #10	LIPT2 (ENSPTRG00000004066) #11	POLD3 (ENSPTRG00000004067)	CHRDL2 (ENSPTRG00000004069) #13	RNF169 (ENSPTRG00000049248) #14	XRRA1 (ENSPTRG00000004071) #15	SPCS2 (ENSPTRG00000004073) ##16	NEU3 (ENSPTRG00000043132) #17	ENSPTRG00000043832	OR2AT4 (ENSPTRG00000004076) #18	ENSPTRG00000047698	SLCO2B1 (ENSPTRG00000004078) #19	TPBGL (ENSPTRG00000052868) #20	ARRB1 (ENSPTRG00000004079) #21	RPS3 (ENSPTRG00000048574) #22	KLHL35 (ENSPTRG00000004081) #24	GDPD5 (ENSPTRG00000046453) #25	SERPINH1 (ENSPTRG00000004083) #26	MAP6 (ENSPTRG00000004085) #27	MOGAT2 (ENSPTRG00000004086) #28	DGAT2 (ENSPTRG00000004087) #29	UVRAG (ENSPTRG00000004088) #30	WNT11 (ENSPTRG00000004090) #31	THAP12 (ENSPTRG00000004091) #32	ENSPTRG00000028470	ENSPTRG00000049644	EMSY (ENSPTRG00000004093) #33	LRRC32 (ENSPTRG00000004094) #34	TSKU (ENSPTRG00000028468) #35	ACER3 (ENSPTRG00000004096) #36
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	575				KCNE3 (ENSANAG00000014115) #10	ENSANAG00000020663 #11	POLD3 (ENSANAG00000030270)	CHRDL2 (ENSANAG00000025866) #13	RNF169 (ENSANAG00000025789) #14	XRRA1 (ENSANAG00000037118) #15	ENSANAG00000035609 #16	NEU3 (ENSANAG00000031004) #17	ENSANAG00000033225	SLCO2B1 (ENSANAG00000027304) #19	TPBGL (ENSANAG00000022236) #20	ARRB1 (ENSANAG00000037078) #21	RPS3 (ENSANAG00000027669) #22	KLHL35 (ENSANAG00000029592) #24	GDPD5 (ENSANAG00000029652) #25	SERPINH1 (ENSANAG00000002099) #26	ENSANAG00000028881 #27	ENSANAG00000025561 #27	MOGAT2 (ENSANAG00000030684) #28	DGAT2 (ENSANAG00000033159) #29	UVRAG (ENSANAG00000037389) #30	WNT11 (ENSANAG00000023221) #31	THAP12 (ENSANAG00000034553) #32	GVQW3 (ENSANAG00000033324)	EMSY (ENSANAG00000037605) #33	LRRC32 (ENSANAG00000036098) #34	TSKU (ENSANAG00000028760) #35	ACER3 (ENSANAG00000031758) #36
Mas night monkey	MODERN SPECIES	1110	ENSANAG00000031949	DNAI7 (ENSANAG00000030533)	ENSANAG00000020002	KRAS (ENSANAG00000030296)	ENSANAG00000020670	LMNTD1 (ENSANAG00000015391)	RASSF8 (ENSANAG00000019236)	BHLHE41 (ENSANAG00000035475)	ENSANAG00000031081	SSPN (ENSANAG00000025202)	ITPR2 (ENSANAG00000022196)	INTS13 (ENSANAG00000022317)	FGFR1OP2 (ENSANAG00000035478)	TM7SF3 (ENSANAG00000030204)	MED21 (ENSANAG00000025951)	ENSANAG00000023438 #22	STK38L (ENSANAG00000025609)	BMAL2 (ENSANAG00000034090)	SMCO2 (ENSANAG00000030042)
Mas night monkey	MODERN SPECIES	964	NALCN (ENSANAG00000002054)	ITGBL1 (ENSANAG00000020933)	FGF14 (ENSANAG00000021289)	TPP2 (ENSANAG00000001887)	METTL21C (ENSANAG00000029712)	TEX30 (ENSANAG00000020101)	POGLUT2 (ENSANAG00000029223)	ENSANAG00000020094	ENSANAG00000025711	SLC10A2 (ENSANAG00000027554)	ENSANAG00000030812	EFNB2 (ENSANAG00000023792)	ARGLU1 (ENSANAG00000025331)	ENSANAG00000028970	NALF1 (ENSANAG00000022602)	ENSANAG00000022561 #22	LIG4 (ENSANAG00000012446)	ABHD13 (ENSANAG00000031542)	TNFSF13B (ENSANAG00000031847)	MYO16 (ENSANAG00000030011)	IRS2 (ENSANAG00000023271)
Cebidae	ANCESTRAL SPECIES		ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Marmoset	MODERN SPECIES	2	ENSCJAG00000053703	POLD3 (ENSCJAG00000015657)	CHRDL2 (ENSCJAG00000015616) #13	RNF169 (ENSCJAG00000015610) #14	ENSCJAG00000083650	XRRA1 (ENSCJAG00000015587) #15	SPCS2 (ENSCJAG00000015576) #16	NEU3 (ENSCJAG00000015573) #17	ENSCJAG00000067324	ENSCJAG00000022088	OR2AT4 (ENSCJAG00000015558) #18	SLCO2B1 (ENSCJAG00000015525) #19	TPBGL (ENSCJAG00000022087) #20	ARRB1 (ENSCJAG00000015459) #21	ENSCJAG00000072627	RPS3 (ENSCJAG00000015424) #22	KLHL35 (ENSCJAG00000015421) #24	GDPD5 (ENSCJAG00000015399) #25	SERPINH1 (ENSCJAG00000015377) #26	MAP6 (ENSCJAG00000015365) #27	MOGAT2 (ENSCJAG00000015357) #28	DGAT2 (ENSCJAG00000015337) #29	UVRAG (ENSCJAG00000015319) #30	WNT11 (ENSCJAG00000015296) #31	THAP12 (ENSCJAG00000012300) #32	GVQW3 (ENSCJAG00000015286)	EMSY (ENSCJAG00000015204) #33	LRRC32 (ENSCJAG00000041496) #34	TSKU (ENSCJAG00000015198) #35	ACER3 (ENSCJAG00000015179) #36	B3GNT6 (ENSCJAG00000048141) #37
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00510000048072	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00630000089910.ib.b.a	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00910000148220	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	28	SC5D (ENSCCAG00000014865)	TECTA (ENSCCAG00000020047)	TBCEL (ENSCCAG00000019888)	GRIK4 (ENSCCAG00000009167)	ARHGEF12 (ENSCCAG00000027602)	TLCD5 (ENSCCAG00000029279)	POU2F3 (ENSCCAG00000037738)	OAF (ENSCCAG00000020197)	TRIM29 (ENSCCAG00000021431)	NECTIN1 (ENSCCAG00000022347)	THY1 (ENSCCAG00000030161)	USP2 (ENSCCAG00000033760)	MFRP (ENSCCAG00000037590)	ENSCCAG00000021418	RNF26 (ENSCCAG00000019825)	ENSCCAG00000021048 #22	MCAM (ENSCCAG00000032195)	ENSCCAG00000034893	CBL (ENSCCAG00000030401)	CCDC153 (ENSCCAG00000025905)	PDZD3 (ENSCCAG00000033692)	NLRX1 (ENSCCAG00000036459)	ABCG4 (ENSCCAG00000036509)	HINFP (ENSCCAG00000037215)	C2CD2L (ENSCCAG00000017908)	DPAGT1 (ENSCCAG00000021664)	H2AX (ENSCCAG00000012122)	ENSCCAG00000037210	HMBS (ENSCCAG00000035326)	VPS11 (ENSCCAG00000037650)	HYOU1 (ENSCCAG00000026008)
Capuchin	MODERN SPECIES	79	C2CD3 (ENSCCAG00000030238)	PPME1 (ENSCCAG00000026198) #7	P4HA3 (ENSCCAG00000020903) #8	PGM2L1 (ENSCCAG00000036451) #9	ENSCCAG00000021883	LIPT2 (ENSCCAG00000036486) #11	POLD3 (ENSCCAG00000020511)	CHRDL2 (ENSCCAG00000022957) #13	RNF169 (ENSCCAG00000033395) #14	XRRA1 (ENSCCAG00000028930) #15	SPCS2 (ENSCCAG00000021321) #16	NEU3 (ENSCCAG00000030531) #17	SLCO2B1 (ENSCCAG00000020122) #19	TPBGL (ENSCCAG00000020228) #20	ARRB1 (ENSCCAG00000022418) #21	RPS3 (ENSCCAG00000022155) #22	KLHL35 (ENSCCAG00000024110) #24	GDPD5 (ENSCCAG00000037483) #25	SERPINH1 (ENSCCAG00000036630) #26	MAP6 (ENSCCAG00000038045) #27	ENSCCAG00000019602	MOGAT2 (ENSCCAG00000033399) #28	DGAT2 (ENSCCAG00000025871) #29	UVRAG (ENSCCAG00000004406) #30	WNT11 (ENSCCAG00000006507) #31	THAP12 (ENSCCAG00000030247) #32	GVQW3 (ENSCCAG00000017675)	EMSY (ENSCCAG00000033043) #33	LRRC32 (ENSCCAG00000036797) #34	ACER3 (ENSCCAG00000022320) #36	CAPN5 (ENSCCAG00000032879)
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	50	PPME1 (ENSSBOG00000031236) #7	P4HA3 (ENSSBOG00000021114) #8	PGM2L1 (ENSSBOG00000021467) #9	ENSSBOG00000029238	ENSSBOG00000026074	ENSSBOG00000016069	LIPT2 (ENSSBOG00000028686) #11	POLD3 (ENSSBOG00000026466)	CHRDL2 (ENSSBOG00000030089) #13	RNF169 (ENSSBOG00000025127) #14	XRRA1 (ENSSBOG00000023521) #15	ENSSBOG00000018610 #16	NEU3 (ENSSBOG00000032626) #17	SLCO2B1 (ENSSBOG00000029587) #19	ARRB1 (ENSSBOG00000027344) #21	RPS3 (ENSSBOG00000021847) #22	KLHL35 (ENSSBOG00000032736) #24	GDPD5 (ENSSBOG00000029684) #25	ENSSBOG00000015754	SERPINH1 (ENSSBOG00000023324) #26	MAP6 (ENSSBOG00000034653) #27	MOGAT2 (ENSSBOG00000028341) #28	DGAT2 (ENSSBOG00000034703) #29	UVRAG (ENSSBOG00000029244) #30	WNT11 (ENSSBOG00000020772) #31	GVQW3 (ENSSBOG00000031479)	EMSY (ENSSBOG00000035462) #33	LRRC32 (ENSSBOG00000034148) #34	OPCML (ENSSBOG00000026714)	NTM (ENSSBOG00000006706)	SNX19 (ENSSBOG00000023782)
Bolivian squirrel monkey	MODERN SPECIES	70	ENSSBOG00000018830	TEX30 (ENSSBOG00000021338)	POGLUT2 (ENSSBOG00000019020)	ENSSBOG00000024890	METTL21EP (ENSSBOG00000032455)	ENSSBOG00000027930	SLC10A2 (ENSSBOG00000033035)	ENSSBOG00000025314	ENSSBOG00000021042	EFNB2 (ENSSBOG00000030780)	ARGLU1 (ENSSBOG00000025713)	ENSSBOG00000021398	NALF1 (ENSSBOG00000025953)	ENSSBOG00000035667	ENSSBOG00000023659	ENSSBOG00000024651 #22	LIG4 (ENSSBOG00000019029)	ABHD13 (ENSSBOG00000019782)	TNFSF13B (ENSSBOG00000033235)	MYO16 (ENSSBOG00000036268)	IRS2 (ENSSBOG00000033562)	COL4A1 (ENSSBOG00000035112)	COL4A2 (ENSSBOG00000022396)	NAXD (ENSSBOG00000021199)	CARS2 (ENSSBOG00000018552)	ING1 (ENSSBOG00000018909)	ANKRD10 (ENSSBOG00000024976)	ARHGEF7 (ENSSBOG00000014203)	TEX29 (ENSSBOG00000029787)	SPACA7 (ENSSBOG00000032331)	TUBGCP3 (ENSSBOG00000031378)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5823														IPO8 (ENSTSYG00000004436)	CAPRIN2 (ENSTSYG00000008590)	ENSTSYG00000034881 #22
Tarsier	MODERN SPECIES	2901															ARRB1 (ENSTSYG00000033736) #21	RPS3 (ENSTSYG00000008664) #22	ENSTSYG00000033862 #24	GDPD5 (ENSTSYG00000029959) #25
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.m	ENSGT00940000163113 #18	ENSGT00940000162049.n	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Bushbaby	MODERN SPECIES	116	KCNE3 (ENSOGAG00000032594) #10	LIPT2 (ENSOGAG00000015602) #11	POLD3 (ENSOGAG00000015605)	CHRDL2 (ENSOGAG00000015608) #13	RNF169 (ENSOGAG00000015611) #14	XRRA1 (ENSOGAG00000015617) #15	SPCS2 (ENSOGAG00000015621) #16	NEU3 (ENSOGAG00000015623) #17	ENSOGAG00000026432	OR2AT4 (ENSOGAG00000024992) #18	ENSOGAG00000034601	ENSOGAG00000030028	ENSOGAG00000002927	SLCO2B1 (ENSOGAG00000011545) #19	ARRB1 (ENSOGAG00000011549) #21	RPS3 (ENSOGAG00000005318) #22	KLHL35 (ENSOGAG00000005323) #24	GDPD5 (ENSOGAG00000027265) #25	SERPINH1 (ENSOGAG00000032244) #26	MAP6 (ENSOGAG00000005329) #27	MOGAT2 (ENSOGAG00000000329) #28	DGAT2 (ENSOGAG00000000330) #29	UVRAG (ENSOGAG00000025371) #30	WNT11 (ENSOGAG00000001568) #31	ENSOGAG00000001569 #32	GVQW3 (ENSOGAG00000027877)	EMSY (ENSOGAG00000011434) #33	LRRC32 (ENSOGAG00000010967) #34	ENSOGAG00000029463	TSKU (ENSOGAG00000016850) #35	ACER3 (ENSOGAG00000016854) #36
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.m	ENSGT00940000163113 #18	ENSGT00940000162049.n	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	26	ENSMICG00000038125	ENSMICG00000043280	ENSMICG00000043516	ENSMICG00000030581	ENSMICG00000045927	ENSMICG00000045366	ENSMICG00000035995	ENSMICG00000037802	ENSMICG00000048114	ENSMICG00000033265	ENSMICG00000031408	ENSMICG00000046604	ENSMICG00000029713	IGKV5-2 (ENSMICG00000032664)	ENSMICG00000006462	ENSMICG00000027280 #22	EIF2AK3 (ENSMICG00000013955)	TEX37 (ENSMICG00000013949)	FOXI3 (ENSMICG00000031310)	ENSMICG00000046528	ENSMICG00000033802	THNSL2 (ENSMICG00000011437)	FABP1 (ENSMICG00000033515)	SMYD1 (ENSMICG00000037338)	ENSMICG00000011409	CD8A (ENSMICG00000005400)	RMND5A (ENSMICG00000047554)	ENSMICG00000033876	RNF103 (ENSMICG00000038067)	ENSMICG00000005492	KDM3A (ENSMICG00000000781)
Mouse lemur	MODERN SPECIES	27	P4HA3 (ENSMICG00000002249) #8	ENSMICG00000002256 #9	LIPT2 (ENSMICG00000045741) #11	POLD3 (ENSMICG00000011102)	CHRDL2 (ENSMICG00000011134) #13	RNF169 (ENSMICG00000046917) #14	XRRA1 (ENSMICG00000027081) #15	ENSMICG00000011153 #16	NEU3 (ENSMICG00000046723) #17	ENSMICG00000029787	ENSMICG00000035272	ENSMICG00000032041	ENSMICG00000038601	SLCO2B1 (ENSMICG00000011163) #19	ARRB1 (ENSMICG00000011177) #21	RPS3 (ENSMICG00000030910) #22	KLHL35 (ENSMICG00000045018) #24	GDPD5 (ENSMICG00000011193) #25	SERPINH1 (ENSMICG00000015249) #26	MAP6 (ENSMICG00000015256) #27	MOGAT2 (ENSMICG00000015272) #28	DGAT2 (ENSMICG00000015277) #29	UVRAG (ENSMICG00000015281) #30	WNT11 (ENSMICG00000015306) #31	THAP12 (ENSMICG00000006139) #32	EMSY (ENSMICG00000006143) #33	LRRC32 (ENSMICG00000026468) #34	ACER3 (ENSMICG00000013908) #36	CAPN5 (ENSMICG00000013928)	MYO7A (ENSMICG00000013944)	GDPD4 (ENSMICG00000046391)
Lemuriformes_a	ANCESTRAL SPECIES	50	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.m	ENSGT00940000163113 #18	ENSGT00940000162049.n	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.a ##32	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Coquerels sifaka	MODERN SPECIES	338	P4HA3 (ENSPCOG00000010138) #8	PGM2L1 (ENSPCOG00000026248) #9	LIPT2 (ENSPCOG00000018043) #11	POLD3 (ENSPCOG00000024555)	ENSPCOG00000020966	CHRDL2 (ENSPCOG00000012970) #13	RNF169 (ENSPCOG00000016721) #14	XRRA1 (ENSPCOG00000020432) #15	ENSPCOG00000017986 #16	NEU3 (ENSPCOG00000014477) #17	ENSPCOG00000026765	ENSPCOG00000004225	ENSPCOG00000026342	SLCO2B1 (ENSPCOG00000026296) #19	ARRB1 (ENSPCOG00000020960) #21	RPS3 (ENSPCOG00000028750) #22	KLHL35 (ENSPCOG00000012453) #24	GDPD5 (ENSPCOG00000023523) #25	SERPINH1 (ENSPCOG00000016388) #26	MAP6 (ENSPCOG00000028415) #27	MOGAT2 (ENSPCOG00000017739) #28	DGAT2 (ENSPCOG00000019069) #29	UVRAG (ENSPCOG00000020635) #30	WNT11 (ENSPCOG00000014058) #31	ENSPCOG00000027615 ##32	EMSY (ENSPCOG00000020972) #33	LRRC32 (ENSPCOG00000028697) #34	ACER3 (ENSPCOG00000013273) #36	CAPN5 (ENSPCOG00000021800)	MYO7A (ENSPCOG00000001371)	GDPD4 (ENSPCOG00000026020)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	513	SNX13 (ENSPSMG00000016751)	ENSPSMG00000016770	AHR (ENSPSMG00000016802)	AGR3 (ENSPSMG00000016834)	AGR2 (ENSPSMG00000016851)	TSPAN13 (ENSPSMG00000016888)	BZW2 (ENSPSMG00000016967)	ANKMY2 (ENSPSMG00000017011)	LRRC72 (ENSPSMG00000017047)	SOSTDC1 (ENSPSMG00000017059)	CRPPA (ENSPSMG00000017090)	MEOX2 (ENSPSMG00000017101)	AGMO (ENSPSMG00000017106)	DGKB (ENSPSMG00000017240)	ETV1 (ENSPSMG00000017451)	ENSPSMG00000017477 #22	ARL4A (ENSPSMG00000017488)	SCIN (ENSPSMG00000017502)	ENSPSMG00000017510	ENSPSMG00000017516	VWDE (ENSPSMG00000017551)	TMEM106B (ENSPSMG00000017565)
Greater bamboo lemur	MODERN SPECIES	747																ENSPSMG00000002794 #22	ENSPSMG00000002802	ACTR3 (ENSPSMG00000002857)	SLC35F5 (ENSPSMG00000002919)	GPR39 (ENSPSMG00000003080)	ENSPSMG00000003082	LYPD1 (ENSPSMG00000003094)	NCKAP5 (ENSPSMG00000003118)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	276	PGM2L1 (ENSPSMG00000003486) #9	KCNE3 (ENSPSMG00000003468) #10	LIPT2 (ENSPSMG00000003465) #11	POLD3 (ENSPSMG00000003441)	CHRDL2 (ENSPSMG00000003418) #13	RNF169 (ENSPSMG00000003387) #14	XRRA1 (ENSPSMG00000003365) #15	SPCS2 (ENSPSMG00000003324) #16	NEU3 (ENSPSMG00000003293) #17	ENSPSMG00000003281	OR2AT4 (ENSPSMG00000003274) #18	ENSPSMG00000003266	SLCO2B1 (ENSPSMG00000003254) #19	TPBGL (ENSPSMG00000003242) #20	ARRB1 (ENSPSMG00000003120) #21	ENSPSMG00000002960 #22	KLHL35 (ENSPSMG00000002917) #24	GDPD5 (ENSPSMG00000002722) #25	SERPINH1 (ENSPSMG00000002607) #26
Greater bamboo lemur	MODERN SPECIES	638										UCK1 (ENSPSMG00000017613)	POMT1 (ENSPSMG00000017780)	PRRC2B (ENSPSMG00000018172)	PLPP7 (ENSPSMG00000018572)	FAM78A (ENSPSMG00000018576)	NUP214 (ENSPSMG00000018673)	ENSPSMG00000018705 #22	AIF1L (ENSPSMG00000018725)	LAMC3 (ENSPSMG00000018744)	FIBCD1 (ENSPSMG00000018761)	QRFP (ENSPSMG00000018767)	ABL1 (ENSPSMG00000018845)	EXOSC2 (ENSPSMG00000018996)	PRDM12 (ENSPSMG00000019030)	FUBP3 (ENSPSMG00000019055)	ASS1 (ENSPSMG00000019105)	HMCN2 (ENSPSMG00000019168)	GPR107 (ENSPSMG00000019182)	FNBP1 (ENSPSMG00000019223)	USP20 (ENSPSMG00000019349)	C9orf78 (ENSPSMG00000019422)	TOR1A (ENSPSMG00000019434)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00940000169601	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Tree shrew	MODERN SPECIES	3807													OR2AT4 (ENSTBEG00000005160) #18	ENSTBEG00000005344 #19	ARRB1 (ENSTBEG00000006210) #21	RPS3 (ENSTBEG00000007053) #22	ENSTBEG00000007259 #24
Glires	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00940000169601	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163.h #26	ENSGT00940000156163.g.b #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Pika	MODERN SPECIES	2116																ENSOPRG00000009496 #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	15	TMTC3 (ENSOCUG00000004320)	CEP290 (ENSOCUG00000004290)	C12orf29 (ENSOCUG00000004284)	C12orf50 (ENSOCUG00000004280)	ENSOCUG00000037227	ENSOCUG00000037685	ENSOCUG00000027647	ENSOCUG00000027442	ENSOCUG00000038571	ENSOCUG00000023687	ENSOCUG00000034779	ENSOCUG00000034843	MGAT4C (ENSOCUG00000017314)	NTS (ENSOCUG00000010336)	RASSF9 (ENSOCUG00000017872)	ENSOCUG00000036577 #22	ALX1 (ENSOCUG00000009125)	LRRIQ1 (ENSOCUG00000017527)	ENSOCUG00000034706	TSPAN19 (ENSOCUG00000037319)	SLC6A15 (ENSOCUG00000014066)	TMTC2 (ENSOCUG00000017847)	METTL25 (ENSOCUG00000017825)	CCDC59 (ENSOCUG00000017824)	ENSOCUG00000036764	PPFIA2 (ENSOCUG00000015770)	ACSS3 (ENSOCUG00000015752)	LIN7A (ENSOCUG00000004203)	MYF5 (ENSOCUG00000025477)	MYF6 (ENSOCUG00000001457)	PTPRQ (ENSOCUG00000011455)
Rabbit	MODERN SPECIES		P4HA3 (ENSOCUG00000010111) #8	PGM2L1 (ENSOCUG00000005709) #9	ENSOCUG00000016447 #10	POLD3 (ENSOCUG00000002523)	CHRDL2 (ENSOCUG00000022782) #13	RNF169 (ENSOCUG00000001789) #14	ENSOCUG00000026028	XRRA1 (ENSOCUG00000012514) #15	ENSOCUG00000038071 #16	NEU3 (ENSOCUG00000012531) #17	ENSOCUG00000036432	OR2AT4 (ENSOCUG00000027488) #18	SLCO2B1 (ENSOCUG00000014225) #19	TPBGL (ENSOCUG00000014231) #20	ARRB1 (ENSOCUG00000026291) #21	RPS3 (ENSOCUG00000022412) #22	KLHL35 (ENSOCUG00000012395) #24	GDPD5 (ENSOCUG00000026378) #25	ENSOCUG00000032044 #26	ENSOCUG00000026029 #26	ENSOCUG00000003302 #27	MOGAT2 (ENSOCUG00000014215) #28	ENSOCUG00000033370	UVRAG (ENSOCUG00000014223) #30	WNT11 (ENSOCUG00000001726) #31	THAP12 (ENSOCUG00000009178) #32	ENSOCUG00000035359	EMSY (ENSOCUG00000017880) #33	LRRC32 (ENSOCUG00000015394) #34	TSKU (ENSOCUG00000021411) #35	ACER3 (ENSOCUG00000021559) #36
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Rodentia_B	ANCESTRAL SPECIES	33	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Muroidea	ANCESTRAL SPECIES	12	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1254					ENSNGAG00000013165	Chrdl2 (ENSNGAG00000000179) #13	Rnf169 (ENSNGAG00000019560) #14	Xrra1 (ENSNGAG00000012048) #15	Spcs2 (ENSNGAG00000013220) #16	Neu3 (ENSNGAG00000011806) #17	ENSNGAG00000016993	ENSNGAG00000016422	Slco2b1 (ENSNGAG00000001998) #19	Tpbgl (ENSNGAG00000000289) #20	Arrb1 (ENSNGAG00000010423) #21	Rps3 (ENSNGAG00000015514) #22	Klhl35 (ENSNGAG00000009818) #24	ENSNGAG00000013714	Serpinh1 (ENSNGAG00000015539) #26	Map6 (ENSNGAG00000013077) #27	Mogat2 (ENSNGAG00000015554) #28	Dgat2 (ENSNGAG00000012414) #29	Uvrag (ENSNGAG00000018199) #30	Wnt11 (ENSNGAG00000013425) #31	ENSNGAG00000013016 #32	Emsy (ENSNGAG00000013674) #33	Lrrc32 (ENSNGAG00000010300) #34	Gucy2d (ENSNGAG00000020383)	Tsku (ENSNGAG00000015490) #35	Acer3 (ENSNGAG00000018623) #36	B3gnt6 (ENSNGAG00000014322) #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877.d #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Cricetidae_B	ANCESTRAL SPECIES	26	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877.d #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Prairie vole	MODERN SPECIES	9	P4ha3 (ENSMOCG00000019829) #8	Pgm2l1 (ENSMOCG00000003706) #9	Kcne3 (ENSMOCG00000003845) #10	Lipt2 (ENSMOCG00000017385) #11	Pold3 (ENSMOCG00000018619)	Chrdl2 (ENSMOCG00000010273) #13	Rnf169 (ENSMOCG00000005688) #14	Xrra1 (ENSMOCG00000008479) #15	Spcs2 (ENSMOCG00000013765) #16	Neu3 (ENSMOCG00000015363) #17	Or2at1 (ENSMOCG00000008347)	Or2at4 (ENSMOCG00000007737) #18	Slco2b1 (ENSMOCG00000022164) #19	Tpbgl (ENSMOCG00000009503) #20	Arrb1 (ENSMOCG00000013364) #21	Rps3 (ENSMOCG00000007699) #22	Klhl35 (ENSMOCG00000012414) #24	ENSMOCG00000014147	Serpinh1 (ENSMOCG00000015514) #26	Map6 (ENSMOCG00000021641) #27	Mogat2 (ENSMOCG00000007716) #28	Dgat2 (ENSMOCG00000012378) #29	Uvrag (ENSMOCG00000016758) #30	Wnt11 (ENSMOCG00000021029) #31	Thap12 (ENSMOCG00000021908) #32	Emsy (ENSMOCG00000008098) #33	Lrrc32 (ENSMOCG00000017378) #34	Gucy2d (ENSMOCG00000003117)	Tsku (ENSMOCG00000007489) #35	Acer3 (ENSMOCG00000014380) #36	B3gnt6 (ENSMOCG00000010357) #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000021679	Pgm2l1 (ENSPEMG00000021465) #9	Kcne3 (ENSPEMG00000024743) #10	Lipt2 (ENSPEMG00000009699) #11	Pold3 (ENSPEMG00000016686)	Chrdl2 (ENSPEMG00000000436) #13	Rnf169 (ENSPEMG00000009722) #14	Xrra1 (ENSPEMG00000022936) #15	Spcs2 (ENSPEMG00000021621) #16	Neu3 (ENSPEMG00000022579) #17	Or2at1 (ENSPEMG00000001658)	Or2at4 (ENSPEMG00000023224) #18	Slco2b1 (ENSPEMG00000022027) #19	Arrb1 (ENSPEMG00000024170) #21	ENSPEMG00000027335	Rps3 (ENSPEMG00000021741) #22	Klhl35 (ENSPEMG00000022958) #24	Gdpd5 (ENSPEMG00000021717) #25	Serpinh1 (ENSPEMG00000022342) #26	Map6 (ENSPEMG00000007984) #27	Mogat2 (ENSPEMG00000023232) #28	Dgat2 (ENSPEMG00000021889) #29	Uvrag (ENSPEMG00000028043) #30	Wnt11 (ENSPEMG00000021569) #31	Thap12 (ENSPEMG00000013204) #32	Emsy (ENSPEMG00000023648) #33	Lrrc32 (ENSPEMG00000024699) #34	ENSPEMG00000026314	ENSPEMG00000028876	ENSPEMG00000024681	Tsku (ENSPEMG00000028771) #35
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000024469	Mkrn3 (ENSPEMG00000009895)	Magel2 (ENSPEMG00000025417)	Ndn (ENSPEMG00000001158)	ENSPEMG00000026068	ENSPEMG00000000510	ENSPEMG00000019573	ENSPEMG00000025848	ENSPEMG00000028866	ENSPEMG00000029784	ENSPEMG00000024562	ENSPEMG00000027816	ENSPEMG00000027080	ENSPEMG00000025968	Mrgprx1 (ENSPEMG00000007777)	ENSPEMG00000022426 #22	ENSPEMG00000021299	Ptpn5 (ENSPEMG00000022553)	Tmem86a (ENSPEMG00000024287)	ENSPEMG00000023153	ENSPEMG00000021660	Misfa (ENSPEMG00000021845)	Uevld (ENSPEMG00000012328)	ENSPEMG00000022662	ENSPEMG00000022031	ENSPEMG00000011562	ENSPEMG00000013216	ENSPEMG00000028549	ENSPEMG00000019594	ENSPEMG00000028728	Luzp2 (ENSPEMG00000019695)
Northern American deer mouse	MODERN SPECIES	10	ENSPEMG00000024670	ENSPEMG00000028339	Chsy3 (ENSPEMG00000010192)	Minar2 (ENSPEMG00000024423)	Adamts19 (ENSPEMG00000015969)	Isoc1 (ENSPEMG00000000429)	Slc27a6 (ENSPEMG00000011111)	Fbn2 (ENSPEMG00000007637)	Slc12a2 (ENSPEMG00000014358)	Ccdc192 (ENSPEMG00000017831)	Ctxn3 (ENSPEMG00000030766)	ENSPEMG00000026741	Prrc1 (ENSPEMG00000009474)	Megf10 (ENSPEMG00000014062)	C330018D20Rik (ENSPEMG00000024261)	ENSPEMG00000030304 #22	Marchf3 (ENSPEMG00000001664)	Lmnb1 (ENSPEMG00000021049)	Tex43 (ENSPEMG00000029586)	Phax (ENSPEMG00000011173)	Aldh7a1 (ENSPEMG00000005818)	Gramd3 (ENSPEMG00000000293)	ENSPEMG00000027705	Zfp608 (ENSPEMG00000009185)	Csnk1g3 (ENSPEMG00000019782)	Cep120 (ENSPEMG00000009773)	Prdm6 (ENSPEMG00000019671)	Ppic (ENSPEMG00000019562)	Snx24 (ENSPEMG00000019816)	Snx2 (ENSPEMG00000019987)	Sncaip (ENSPEMG00000013269)
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.g	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877.d #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	101	P4ha3 (ENSCGRG00001020549) #8	Pgm2l1 (ENSCGRG00001022200) #9	Kcne3 (ENSCGRG00001006190) #10	Lipt2 (ENSCGRG00001003966) #11	Pold3 (ENSCGRG00001024887)	Chrdl2 (ENSCGRG00001017085) #13	Xrra1 (ENSCGRG00001021284) #15	ENSCGRG00001018251 #16	Neu3 (ENSCGRG00001022920) #17	ENSCGRG00001009618	ENSCGRG00001008790	Or2at4 (ENSCGRG00001009746) #18	Slco2b1 (ENSCGRG00001015456) #19	Tpbgl (ENSCGRG00001007068) #20	Arrb1 (ENSCGRG00001007148) #21	ENSCGRG00001013667 #22	Klhl35 (ENSCGRG00001005839) #24	Gdpd5 (ENSCGRG00001018824) #25	Serpinh1 (ENSCGRG00001024167) #26	Map6 (ENSCGRG00001012636) #27	Mogat2 (ENSCGRG00001004764) #28	Dgat2 (ENSCGRG00001020895) #29	Uvrag (ENSCGRG00001006874) #30	Wnt11 (ENSCGRG00001022788) #31	Thap12 (ENSCGRG00001021774) #32	ENSCGRG00001019331 #33	Lrrc32 (ENSCGRG00001007026) #34	Gucy2d (ENSCGRG00001012034)	Tsku (ENSCGRG00001012773) #35	ENSCGRG00001024060	Acer3 (ENSCGRG00001013571) #36
Chinese hamster chok1gshd	MODERN SPECIES	153	Atg12 (ENSCGRG00001012075)	Ap3s1 (ENSCGRG00001000186)	Lvrn (ENSCGRG00001020459)	ENSCGRG00001000319	Commd10 (ENSCGRG00001017628)	Sema6a (ENSCGRG00001021091)	Dtwd2 (ENSCGRG00001012992)	Dmxl1 (ENSCGRG00001022767)	ENSCGRG00001020576	Tnfaip8 (ENSCGRG00001016982)	Hsd17b4 (ENSCGRG00001017147)	ENSCGRG00001010196	Fam170a (ENSCGRG00001022824)	ENSCGRG00001007454	Pudp (ENSCGRG00001004277)	ENSCGRG00001003744 #22	Prr16 (ENSCGRG00001005826)	ENSCGRG00001012009	Ftmt (ENSCGRG00001006087)	Srfbp1 (ENSCGRG00001000718)	Lox (ENSCGRG00001014607)	Zfp474 (ENSCGRG00001002746)	1700034E13Rik (ENSCGRG00001001918)	Gykl1 (ENSCGRG00001001492)	Sncaip (ENSCGRG00001013058)	ENSCGRG00001023240	Snx24 (ENSCGRG00001011694)	Ppic (ENSCGRG00001008818)	Prdm6 (ENSCGRG00001016821)	Cep120 (ENSCGRG00001017499)	Csnk1g3 (ENSCGRG00001024465)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	634	Pou4f3 (ENSMAUG00000004271)	Tcerg1 (ENSMAUG00000001246)	Gpr151 (ENSMAUG00000017885)	Ppp2r2b (ENSMAUG00000000540)	Stk32a (ENSMAUG00000000298)	Dpysl3 (ENSMAUG00000004068)	Jakmip2 (ENSMAUG00000019544)	Spink1 (ENSMAUG00000012128)	Scgb3a2 (ENSMAUG00000011964)	Gm94 (ENSMAUG00000010983)	Spink5 (ENSMAUG00000008656)	Spink14 (ENSMAUG00000005950)	Spink6 (ENSMAUG00000017716)	Spink12 (ENSMAUG00000017393)	Gm37797 (ENSMAUG00000016122)	ENSMAUG00000015088 #22	Gm10267 (ENSMAUG00000014573)	Npy6r (ENSMAUG00000017787)	Myot (ENSMAUG00000014226)	Dcp2 (ENSMAUG00000013325)	Mcc (ENSMAUG00000019507)	Ythdc2 (ENSMAUG00000016179)	Kcnn2 (ENSMAUG00000013907)	Trim36 (ENSMAUG00000017118)	Pggt1b (ENSMAUG00000016267)	Ccdc112 (ENSMAUG00000013957)	Fem1c (ENSMAUG00000013678)	ENSMAUG00000012918	ENSMAUG00000017914	Tmed7 (ENSMAUG00000000849)	ENSMAUG00000019719
Golden Hamster	MODERN SPECIES	627	Tom1l2 (ENSMAUG00000022049)	Srebf1 (ENSMAUG00000015988)	Rai1 (ENSMAUG00000001278)	Pemt (ENSMAUG00000020085)	Rasd1 (ENSMAUG00000020548)	Med9 (ENSMAUG00000013247)	ENSMAUG00000010388	Nt5m (ENSMAUG00000017068)	Cops3 (ENSMAUG00000017378)	Flcn (ENSMAUG00000017523)	Pld6 (ENSMAUG00000013977)	ENSMAUG00000015837	Or2w25 (ENSMAUG00000020886)	Or2b11 (ENSMAUG00000010476)	Nlrp3 (ENSMAUG00000020051)	ENSMAUG00000006329 #22	ENSMAUG00000017910	Zkscan17 (ENSMAUG00000016630)	ENSMAUG00000019046	Jmjd4 (ENSMAUG00000017265)	Snap47 (ENSMAUG00000020014)	Prss38 (ENSMAUG00000019978)	Wnt9a (ENSMAUG00000021643)	Wnt3a (ENSMAUG00000021475)	ENSMAUG00000022253	2310033P09Rik (ENSMAUG00000019958)	Guk1 (ENSMAUG00000022283)	Gjc2 (ENSMAUG00000020150)	Iba57 (ENSMAUG00000020575)	Obscn (ENSMAUG00000022279)	Trim11 (ENSMAUG00000001510)
Golden Hamster	MODERN SPECIES	660	Ppme1 (ENSMAUG00000010412) #7	P4ha3 (ENSMAUG00000018103) #8	Pgm2l1 (ENSMAUG00000017167) #9	Kcne3 (ENSMAUG00000011451) #10	Lipt2 (ENSMAUG00000019457) #11	ENSMAUG00000014499	Chrdl2 (ENSMAUG00000017187) #13	Rnf169 (ENSMAUG00000014501) #14	Xrra1 (ENSMAUG00000021020) #15	Spcs2 (ENSMAUG00000011785) #16	Neu3 (ENSMAUG00000021349) #17	Or2at1 (ENSMAUG00000001599)	ENSMAUG00000017960 #19	Tpbgl (ENSMAUG00000008440) #20	Arrb1 (ENSMAUG00000021854) #21	ENSMAUG00000012031 #22	Klhl35 (ENSMAUG00000021872) #24	ENSMAUG00000015100	Serpinh1 (ENSMAUG00000019515) #26	Map6 (ENSMAUG00000011744) #27	Mogat2 (ENSMAUG00000012718) #28	Dgat2 (ENSMAUG00000009895) #29	Uvrag (ENSMAUG00000022039) #30	Wnt11 (ENSMAUG00000008427) #31	Thap12 (ENSMAUG00000000897) #32	ENSMAUG00000013228	Emsy (ENSMAUG00000017757) #33	ENSMAUG00000017794 #34	Gucy2d (ENSMAUG00000010563)	Tsku (ENSMAUG00000014311) #35	Acer3 (ENSMAUG00000021627) #36
Murinae	ANCESTRAL SPECIES		ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Rat	MODERN SPECIES	13	Fastkd1 (ENSRNOG00000024335)	Klhl41 (ENSRNOG00000007461)	Bbs5 (ENSRNOG00000007127)	Lrp2 (ENSRNOG00000056184)	Dhrs9 (ENSRNOG00000065735)	Abcb11 (ENSRNOG00000050860)	AABR07052465.1 (ENSRNOG00000050620)	Spc25 (ENSRNOG00000006731)	Nostrin (ENSRNOG00000006611)	Cers6 (ENSRNOG00000024595)	Eif5-ps1 (ENSRNOG00000065729)	LOC685184 (ENSRNOG00000062489)	Stk39 (ENSRNOG00000024808)	B3galt1 (ENSRNOG00000007625)	Xirp2 (ENSRNOG00000034258)	RGD1560831 (ENSRNOG00000007605) #22	Scn7a (ENSRNOG00000029342)	Scn9a (ENSRNOG00000006639)	LOC108350387 (ENSRNOG00000066633)	Scn1a (ENSRNOG00000053122)	Ttc21b (ENSRNOG00000005868)	Galnt3 (ENSRNOG00000005727)	Csrnp3 (ENSRNOG00000005359)	Scn2a (ENSRNOG00000005018)	Scn3a (ENSRNOG00000005007)	Slc38a11 (ENSRNOG00000004966)	Cobll1 (ENSRNOG00000027016)	Grb14 (ENSRNOG00000052498)	ENSRNOG00000071011	Fign (ENSRNOG00000004679)	Kcnh7 (ENSRNOG00000007528)
Mus	ANCESTRAL SPECIES		ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Shrew mouse	MODERN SPECIES		P4ha3 (MGP_PahariEiJ_G0013265) #8	Pgm2l1 (MGP_PahariEiJ_G0013264) #9	Kcne3 (MGP_PahariEiJ_G0013263) #10	Lipt2 (MGP_PahariEiJ_G0013262) #11	Pold3 (MGP_PahariEiJ_G0013261)	Chrdl2 (MGP_PahariEiJ_G0013260) #13	Rnf169 (MGP_PahariEiJ_G0013259) #14	Xrra1 (MGP_PahariEiJ_G0013258) #15	Spcs2 (MGP_PahariEiJ_G0013257) #16	Neu3 (MGP_PahariEiJ_G0013256) #17	MGP_PahariEiJ_G0013255	Or2at4 (MGP_PahariEiJ_G0013254) #18	Slco2b1 (MGP_PahariEiJ_G0013253) #19	Tpbgl (MGP_PahariEiJ_G0013252) #20	Arrb1 (MGP_PahariEiJ_G0013251) #21	Rps3 (MGP_PahariEiJ_G0013250) #22	Klhl35 (MGP_PahariEiJ_G0013249) #24	Gdpd5 (MGP_PahariEiJ_G0013248) #25	Serpinh1 (MGP_PahariEiJ_G0013247) #26	Map6 (MGP_PahariEiJ_G0013246) #27	Mogat2 (MGP_PahariEiJ_G0013245) #28	Dgat2 (MGP_PahariEiJ_G0013244) #29	Uvrag (MGP_PahariEiJ_G0013243) #30	Wnt11 (MGP_PahariEiJ_G0013242) #31	Thap12 (MGP_PahariEiJ_G0013241) #32	Emsy (MGP_PahariEiJ_G0013240) #33	Lrrc32 (MGP_PahariEiJ_G0013239) #34	Gucy2d (MGP_PahariEiJ_G0013238)	Tsku (MGP_PahariEiJ_G0013237) #35	Acer3 (MGP_PahariEiJ_G0013236) #36	B3gnt6 (MGP_PahariEiJ_G0013235) #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Ryukyu mouse	MODERN SPECIES	16	Ppme1 (MGP_CAROLIEiJ_G0030044) #7	P4ha3 (MGP_CAROLIEiJ_G0030043) #8	Pgm2l1 (MGP_CAROLIEiJ_G0030042) #9	Kcne3 (MGP_CAROLIEiJ_G0030041) #10	Lipt2 (MGP_CAROLIEiJ_G0030040) #11	Pold3 (MGP_CAROLIEiJ_G0030039)	Chrdl2 (MGP_CAROLIEiJ_G0030038) #13	Rnf169 (MGP_CAROLIEiJ_G0030037) #14	Xrra1 (MGP_CAROLIEiJ_G0030036) #15	Spcs2 (MGP_CAROLIEiJ_G0030035) #16	MGP_CAROLIEiJ_G0030034 #18	MGP_CAROLIEiJ_G0030033 #18	Slco2b1 (MGP_CAROLIEiJ_G0030032) #19	Tpbgl (MGP_CAROLIEiJ_G0030031) #20	Arrb1 (MGP_CAROLIEiJ_G0030030) #21	Rps3 (MGP_CAROLIEiJ_G0030029) #22	Klhl35 (MGP_CAROLIEiJ_G0030028) #24	Gdpd5 (MGP_CAROLIEiJ_G0030027) #25	Serpinh1 (MGP_CAROLIEiJ_G0030026) #26	Map6 (MGP_CAROLIEiJ_G0030025) #27	Mogat2 (MGP_CAROLIEiJ_G0030024) #28	MGP_CAROLIEiJ_G0030023 #29	Uvrag (MGP_CAROLIEiJ_G0030022) #30	Wnt11 (MGP_CAROLIEiJ_G0030021) #31	Thap12 (MGP_CAROLIEiJ_G0030020) #32	Emsy (MGP_CAROLIEiJ_G0030019) #33	Lrrc32 (MGP_CAROLIEiJ_G0030018) #34	Gucy2d (MGP_CAROLIEiJ_G0030017)	Tsku (MGP_CAROLIEiJ_G0030016) #35	Acer3 (MGP_CAROLIEiJ_G0030015) #36	B3gnt6 (MGP_CAROLIEiJ_G0030014) #37
Mus_B	ANCESTRAL SPECIES		ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Mouse	MODERN SPECIES	16	P4ha3 (ENSMUSG00000051048) #8	Pgm2l1 (ENSMUSG00000030729) #9	Kcne3 (ENSMUSG00000035165) #10	Lipt2 (ENSMUSG00000030725) #11	Pold3 (ENSMUSG00000030726)	Chrdl2 (ENSMUSG00000030732) #13	Rnf169 (ENSMUSG00000058761) #14	Xrra1 (ENSMUSG00000035211) #15	Spcs2 (ENSMUSG00000035227) #16	Neu3 (ENSMUSG00000035239) #17	Or2at1 (ENSMUSG00000073997)	Or2at4 (ENSMUSG00000073998) #18	Slco2b1 (ENSMUSG00000030737) #19	Tpbgl (ENSMUSG00000096606) #20	Arrb1 (ENSMUSG00000018909) #21	Rps3 (ENSMUSG00000030744) #22	Klhl35 (ENSMUSG00000035298) #24	Gdpd5 (ENSMUSG00000035314) #25	Serpinh1 (ENSMUSG00000070436) #26	Map6 (ENSMUSG00000055407) #27	Mogat2 (ENSMUSG00000052396) #28	Dgat2 (ENSMUSG00000030747) #29	Uvrag (ENSMUSG00000035354) #30	Wnt11 (ENSMUSG00000015957) #31	Thap12 (ENSMUSG00000030753) #32	Emsy (ENSMUSG00000035401) #33	Lrrc32 (ENSMUSG00000090958) #34	Gucy2d (ENSMUSG00000074003)	Tsku (ENSMUSG00000049580) #35	Acer3 (ENSMUSG00000030760) #36	B3gnt6 (ENSMUSG00000074004) #37
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01070000253969	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Steppe mouse	MODERN SPECIES	3349	Lipt2 (ENSMSIG00000027742) #11	Pold3 (ENSMSIG00000027730)	ENSMSIG00000027727	Chrdl2 (ENSMSIG00000027712) #13	Rnf169 (ENSMSIG00000027708) #14	Xrra1 (ENSMSIG00000027684) #15	Spcs2 (ENSMSIG00000027625) #16	Neu3 (ENSMSIG00000027608) #17	ENSMSIG00000027598	ENSMSIG00000027596	Or2at1 (ENSMSIG00000027584)	Or2at4 (ENSMSIG00000027555) #18	Slco2b1 (ENSMSIG00000027516) #19	Tpbgl (ENSMSIG00000027507) #20	ENSMSIG00000027402 #21	Rps3 (ENSMSIG00000027343) #22	Klhl35 (ENSMSIG00000027326) #24	Gdpd5 (ENSMSIG00000027274) #25	Serpinh1 (ENSMSIG00000027236) #26	Map6 (ENSMSIG00000027203) #27	ENSMSIG00000027198	Mogat2 (ENSMSIG00000027187) #28	Dgat2 (ENSMSIG00000027153) #29	Uvrag (ENSMSIG00000027125) #30	Wnt11 (ENSMSIG00000027102) #31	Thap12 (ENSMSIG00000027087) #32	Emsy (ENSMSIG00000026804) #33	ENSMSIG00000026793	Lrrc32 (ENSMSIG00000026734) #34	Gucy2d (ENSMSIG00000026666)	ENSMSIG00000026660
spretus	MODERN SPECIES	16	P4ha3 (MGP_SPRETEiJ_G0031154) #8	Pgm2l1 (MGP_SPRETEiJ_G0031153) #9	Kcne3 (MGP_SPRETEiJ_G0031152) #10	Lipt2 (MGP_SPRETEiJ_G0031151) #11	Pold3 (MGP_SPRETEiJ_G0031150)	Chrdl2 (MGP_SPRETEiJ_G0031149) #13	Rnf169 (MGP_SPRETEiJ_G0031148) #14	Xrra1 (MGP_SPRETEiJ_G0031147) #15	Spcs2 (MGP_SPRETEiJ_G0031146) #16	Neu3 (MGP_SPRETEiJ_G0031145) #17	MGP_SPRETEiJ_G0031144 #18	MGP_SPRETEiJ_G0031143 #18	Slco2b1 (MGP_SPRETEiJ_G0031142) #19	Tpbgl (MGP_SPRETEiJ_G0031141) #20	Arrb1 (MGP_SPRETEiJ_G0031140) #21	Rps3 (MGP_SPRETEiJ_G0031139) #22	Klhl35 (MGP_SPRETEiJ_G0031138) #24	Gdpd5 (MGP_SPRETEiJ_G0031137) #25	Serpinh1 (MGP_SPRETEiJ_G0031136) #26	Map6 (MGP_SPRETEiJ_G0031135) #27	Mogat2 (MGP_SPRETEiJ_G0031134) #28	Dgat2 (MGP_SPRETEiJ_G0031133) #29	Uvrag (MGP_SPRETEiJ_G0031132) #30	Wnt11 (MGP_SPRETEiJ_G0031131) #31	MGP_SPRETEiJ_G0031130 ##32	Emsy (MGP_SPRETEiJ_G0031129) #33	Lrrc32 (MGP_SPRETEiJ_G0031128) #34	Gucy2d (MGP_SPRETEiJ_G0031127)	Tsku (MGP_SPRETEiJ_G0031126) #35	Acer3 (MGP_SPRETEiJ_G0031125) #36	B3gnt6 (MGP_SPRETEiJ_G0031124) #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	59	Ppme1 (ENSJJAG00000007410) #7	P4ha3 (ENSJJAG00000020207) #8	Pgm2l1 (ENSJJAG00000022120) #9	Kcne3 (ENSJJAG00000020890) #10	ENSJJAG00000023707	Lipt2 (ENSJJAG00000017301) #11	Pold3 (ENSJJAG00000017773)	Chrdl2 (ENSJJAG00000016161) #13	Rnf169 (ENSJJAG00000011953) #14	Xrra1 (ENSJJAG00000008569) #15	Spcs2 (ENSJJAG00000021065) #16	Neu3 (ENSJJAG00000017819) #17	ENSJJAG00000021660 #19	Tpbgl (ENSJJAG00000010465) #20	Arrb1 (ENSJJAG00000004361) #21	Rps3 (ENSJJAG00000018981) #22	Klhl35 (ENSJJAG00000013370) #24	ENSJJAG00000007355	Serpinh1 (ENSJJAG00000023536) #26	Map6 (ENSJJAG00000014715) #27	Mogat2 (ENSJJAG00000023310) #28	Dgat2 (ENSJJAG00000019379) #29	Uvrag (ENSJJAG00000004695) #30	Wnt11 (ENSJJAG00000014979) #31	ENSJJAG00000013737 #32	Emsy (ENSJJAG00000022026) #33	Lrrc32 (ENSJJAG00000000443) #34	ENSJJAG00000022648	Tsku (ENSJJAG00000012703) #35	Acer3 (ENSJJAG00000016119) #36	Capn5 (ENSJJAG00000021999)
Lesser Egyptian jerboa	MODERN SPECIES	44	Smoc2 (ENSJJAG00000009559)	Dact2 (ENSJJAG00000006451)	ENSJJAG00000015043	ENSJJAG00000011658	Afdn (ENSJJAG00000011148)	ENSJJAG00000020398	Cep43 (ENSJJAG00000024342)	ENSJJAG00000013485	Rps6ka2 (ENSJJAG00000005765)	ENSJJAG00000020707	ENSJJAG00000023581	ENSJJAG00000022568	Pde10a (ENSJJAG00000010428)	ENSJJAG00000005686	ENSJJAG00000010987	ENSJJAG00000017023 #22	Pabpc6 (ENSJJAG00000019230)	Qki (ENSJJAG00000022765)	Pacrg (ENSJJAG00000013819)	ENSJJAG00000022340	Prkn (ENSJJAG00000011282)	Agpat4 (ENSJJAG00000024380)	ENSJJAG00000017984	ENSJJAG00000016960	Plg (ENSJJAG00000023805)	Slc22a3 (ENSJJAG00000015842)	Slc22a2 (ENSJJAG00000020676)	Slc22a1 (ENSJJAG00000017119)	Igf2r (ENSJJAG00000019554)	Mas1 (ENSJJAG00000011567)	Pnldc1 (ENSJJAG00000009937)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	392	ENSDORG00000023722	ENSDORG00000009251	ENSDORG00000028388	ENSDORG00000028021	Stx19 (ENSDORG00000024286)	Arl13b (ENSDORG00000006144)	Pros1 (ENSDORG00000023647)	Epha3 (ENSDORG00000003956)	4930453N24Rik (ENSDORG00000023462)	Zfp654 (ENSDORG00000010609)	Cggbp1 (ENSDORG00000024826)	Htr1f (ENSDORG00000009973)	Pou1f1 (ENSDORG00000016030)	Chmp2b (ENSDORG00000016032)	Vgll3 (ENSDORG00000012784)	ENSDORG00000025518 #22	Cadm2 (ENSDORG00000001291)	Gbe1 (ENSDORG00000012473)
Kangaroo rat	MODERN SPECIES	341	Ppme1 (ENSDORG00000011061) #7	P4ha3 (ENSDORG00000011067) #8	Pgm2l1 (ENSDORG00000001675) #9	Kcne3 (ENSDORG00000028654) #10	Lipt2 (ENSDORG00000015519) #11	ENSDORG00000008335 #12	Chrdl2 (ENSDORG00000005504) #13	Rnf169 (ENSDORG00000009674) #14	Xrra1 (ENSDORG00000009675) #15	Spcs2 (ENSDORG00000009679) #16	Neu3 (ENSDORG00000023952) #17	Or2at1 (ENSDORG00000002748)	Or2at4 (ENSDORG00000023720) #18	ENSDORG00000006523 #19	Arrb1 (ENSDORG00000004398) #21	Rps3 (ENSDORG00000002974) #22	Klhl35 (ENSDORG00000002975) #24	ENSDORG00000002976	ENSDORG00000002978 #26	ENSDORG00000025798 #27	Dgat2 (ENSDORG00000015911) #29	Uvrag (ENSDORG00000015912) #30	Wnt11 (ENSDORG00000005892) #31	ENSDORG00000030214 #32	Emsy (ENSDORG00000008129) #33	Lrrc32 (ENSDORG00000027997) #34	ENSDORG00000028416	Tsku (ENSDORG00000005661) #35	Capn5 (ENSDORG00000014952)	Myo7a (ENSDORG00000014955)	Pak1 (ENSDORG00000015484)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000021193	CHRDL2 (ENSHGLG00000013117) #13	RNF169 (ENSHGLG00000047439) #14	ENSHGLG00000038136 #15	ENSHGLG00000004932 #15	SPCS2 (ENSHGLG00000044953) #16	ENSHGLG00000042609	NEU3 (ENSHGLG00000018397) #17	ENSHGLG00000032512	ENSHGLG00000039039	ENSHGLG00000033098	OR2AT4 (ENSHGLG00000049134) #18	SLCO2B1 (ENSHGLG00000015264) #19	TPBGL (ENSHGLG00000021318) #20	ARRB1 (ENSHGLG00000015558) #21	RPS3 (ENSHGLG00000019339) #22	KLHL35 (ENSHGLG00000004947) #24	GDPD5 (ENSHGLG00000009912) #25	SERPINH1 (ENSHGLG00000007288) #26	MAP6 (ENSHGLG00000005485) #27	ENSHGLG00000043050	MOGAT2 (ENSHGLG00000005337) #28	DGAT2 (ENSHGLG00000003971) #29	ENSHGLG00000039982	UVRAG (ENSHGLG00000003077) #30	WNT11 (ENSHGLG00000010701) #31	THAP12 (ENSHGLG00000043567) #32	GVQW3 (ENSHGLG00000047967)	EMSY (ENSHGLG00000006473) #33	LRRC32 (ENSHGLG00000019111) #34	ENSHGLG00000019386
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Guinea pig	MODERN SPECIES	103	PPME1 (ENSCPOG00000003599) #7	P4HA3 (ENSCPOG00000003601) #8	PGM2L1 (ENSCPOG00000014068) #9	KCNE3 (ENSCPOG00000033408) #10	LIPT2 (ENSCPOG00000025073) #11	ENSCPOG00000007066	CHRDL2 (ENSCPOG00000007071) #13	RNF169 (ENSCPOG00000025687) #14	XRRA1 (ENSCPOG00000007269) #15	SPCS2 (ENSCPOG00000033774) #16	NEU3 (ENSCPOG00000006422) #17	OR2AT4 (ENSCPOG00000012056) #18	SLCO2B1 (ENSCPOG00000015052) #19	TPBGL (ENSCPOG00000015056) #20	ARRB1 (ENSCPOG00000000209) #21	RPS3 (ENSCPOG00000004665) #22	KLHL35 (ENSCPOG00000010232) #24	GDPD5 (ENSCPOG00000010246) #25	SERPINH1 (ENSCPOG00000022994) #26	ENSCPOG00000031687 #27
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36	ENSGT00940000163174 #37
Long-tailed chinchilla	MODERN SPECIES	121	C2CD3 (ENSCLAG00000015900)	PPME1 (ENSCLAG00000016482) #7	P4HA3 (ENSCLAG00000016260) #8	PGM2L1 (ENSCLAG00000015758) #9	KCNE3 (ENSCLAG00000016222) #10	LIPT2 (ENSCLAG00000016419) #11	ENSCLAG00000014255 #12	CHRDL2 (ENSCLAG00000016930) #13	RNF169 (ENSCLAG00000015974) #14	XRRA1 (ENSCLAG00000014397) #15	SPCS2 (ENSCLAG00000016410) #16	NEU3 (ENSCLAG00000015476) #17	SLCO2B1 (ENSCLAG00000013902) #19	TPBGL (ENSCLAG00000016335) #20	ARRB1 (ENSCLAG00000014486) #21	RPS3 (ENSCLAG00000013819) #22	KLHL35 (ENSCLAG00000015297) #24	GDPD5 (ENSCLAG00000015415) #25	SERPINH1 (ENSCLAG00000013718) #26	ENSCLAG00000015204 #27	DGAT2 (ENSCLAG00000015138) #29	UVRAG (ENSCLAG00000016075) #30	WNT11 (ENSCLAG00000014333) #31	THAP12 (ENSCLAG00000014847) #32	EMSY (ENSCLAG00000015699) #33	LRRC32 (ENSCLAG00000016535) #34	ENSCLAG00000014932	TSKU (ENSCLAG00000016143) #35	ENSCLAG00000015013	ACER3 (ENSCLAG00000014899) #36	B3GNT6 (ENSCLAG00000018076) #37
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	287										VIP (ENSODEG00000002006)	MYCT1 (ENSODEG00000001986)	SYNE1 (ENSODEG00000001363)	ESR1 (ENSODEG00000001036)	ENSODEG00000000997	CCDC170 (ENSODEG00000000921)	ENSODEG00000001305 #22	ENSODEG00000001273	ENSODEG00000001262	RMND1 (ENSODEG00000001174)	ZBTB2 (ENSODEG00000001142)	ENSODEG00000018687	MTHFD1L (ENSODEG00000001602)	PLEKHG1 (ENSODEG00000001446)	ENSODEG00000018708	IYD (ENSODEG00000001311)	PPP1R14C (ENSODEG00000001211)
Degu	MODERN SPECIES	109	LAMB1 (ENSODEG00000000690)	DLD (ENSODEG00000000733)	ENSODEG00000000746	ENSODEG00000000753	SLC26A3 (ENSODEG00000000813)	ENSODEG00000001115	ENSODEG00000018679	SLC26A4 (ENSODEG00000001172)	ENSODEG00000001457	DUS4L (ENSODEG00000001582)	COG5 (ENSODEG00000001169)	ENSODEG00000001284	GPR22 (ENSODEG00000001302)	ENSODEG00000001327	PRKAR2B (ENSODEG00000001356)	ENSODEG00000001789 #22	ENSODEG00000001816	ENSODEG00000001876	CCDC71L (ENSODEG00000001887)	ENSODEG00000001918	SYPL1 (ENSODEG00000001969)	CDHR3 (ENSODEG00000002812)	ENSODEG00000002991	ATXN7L1 (ENSODEG00000003212)	EFCAB10 (ENSODEG00000003310)	RINT1 (ENSODEG00000003415)	PUS7 (ENSODEG00000001435)	ENSODEG00000018663	ENSODEG00000001524	ENSODEG00000002016	ENSODEG00000002095
Degu	MODERN SPECIES	295					ENSODEG00000002819	RAB7A (ENSODEG00000002835)	ENSODEG00000002857	RPN1 (ENSODEG00000002872)	GATA2 (ENSODEG00000002888)	DNAJB8 (ENSODEG00000018895)	EEFSEC (ENSODEG00000002928)	RUVBL1 (ENSODEG00000003323)	SEC61A1 (ENSODEG00000003340)	KBTBD12 (ENSODEG00000003397)	MGLL (ENSODEG00000003434)	ENSODEG00000003742 #22	ABTB1 (ENSODEG00000003795)	PODXL2 (ENSODEG00000003875)	MCM2 (ENSODEG00000003959)	TPRA1 (ENSODEG00000002274)	PLXNA1 (ENSODEG00000002675)	ENSODEG00000002815	ENSODEG00000018745	ENSODEG00000001312	TXNRD3 (ENSODEG00000001387)	ENSODEG00000001498	TMEM43 (ENSODEG00000001624)	XPC (ENSODEG00000001699)	LSM3 (ENSODEG00000001726)	ENSODEG00000001738	GRIP2 (ENSODEG00000001787)
Degu	MODERN SPECIES	92	TRIM13 (ENSODEG00000005624)	ENSODEG00000006101	ENSODEG00000005796	ENSODEG00000006427	EBPL (ENSODEG00000006022)	RCBTB1 (ENSODEG00000009239)	SETDB2 (ENSODEG00000005653)	CAB39L (ENSODEG00000005405)	CDADC1 (ENSODEG00000005355)	MLNR (ENSODEG00000005947)	ENSODEG00000019344	FNDC3A (ENSODEG00000005882)	ENSODEG00000005498	CYSLTR2 (ENSODEG00000005345)	ENSODEG00000019363	ENSODEG00000006804 #22	RCBTB2 (ENSODEG00000007840)	LPAR6 (ENSODEG00000019536)	RB1 (ENSODEG00000007075)	ENSODEG00000005765	ENSODEG00000006829	NUDT15 (ENSODEG00000006598)	ENSODEG00000006404	ENSODEG00000005873	ENSODEG00000019388	ENSODEG00000005886	HTR2A (ENSODEG00000005410)	ENSODEG00000005173	LRCH1 (ENSODEG00000005209)	RUBCNL (ENSODEG00000006136)	ENSODEG00000006039
Degu	DUPLICATION
Degu	MODERN SPECIES	109										ENSODEG00000018900	PCDH10 (ENSODEG00000003197)	ENSODEG00000003065	C4orf33 (ENSODEG00000003048)	SCLT1 (ENSODEG00000002596)	JADE1 (ENSODEG00000002559)	ENSODEG00000002537 #22	ENSODEG00000002522	ENSODEG00000002509	ENSODEG00000002382	ENSODEG00000002367	ENSODEG00000001334	ENSODEG00000001292	ABHD18 (ENSODEG00000001060)	MFSD8 (ENSODEG00000000927)	ENSODEG00000000892	PLK4 (ENSODEG00000000625)	ENSODEG00000000579	ENSODEG00000000559	ENSODEG00000000469	ORC5 (ENSODEG00000000381)	LHFPL3 (ENSODEG00000002390)
Degu	MODERN SPECIES	229									HMCN1 (ENSODEG00000000838)	ENSODEG00000000957	TPR (ENSODEG00000000889)	ENSODEG00000000804	PDC (ENSODEG00000000764)	PTGS2 (ENSODEG00000000729)	PLA2G4A (ENSODEG00000000676)	ENSODEG00000000640 #22	BRINP3 (ENSODEG00000000619)
Degu	MODERN SPECIES	90	LIPT2 (ENSODEG00000004972) #11	ENSODEG00000019096	ENSODEG00000004965	POLD3 (ENSODEG00000004735)	CHRDL2 (ENSODEG00000004877) #13	RNF169 (ENSODEG00000004854) #14	XRRA1 (ENSODEG00000004727) #15	SPCS2 (ENSODEG00000004684) #16	NEU3 (ENSODEG00000004614) #17	ENSODEG00000019165	ENSODEG00000004518	OR2AT4 (ENSODEG00000004509) #18	SLCO2B1 (ENSODEG00000004779) #19	TPBGL (ENSODEG00000004759) #20	ARRB1 (ENSODEG00000004633) #21	ENSODEG00000004564 #22	KLHL35 (ENSODEG00000004522) #24	ENSODEG00000004513	SERPINH1 (ENSODEG00000004317) #26	ENSODEG00000004327 #27	MOGAT2 (ENSODEG00000004302) #28	DGAT2 (ENSODEG00000004293) #29	UVRAG (ENSODEG00000004147) #30	WNT11 (ENSODEG00000003887) #31	ENSODEG00000003873 ##32	EMSY (ENSODEG00000003710) #33	LRRC32 (ENSODEG00000008307) #34	ENSODEG00000008288	TSKU (ENSODEG00000019557) #35
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Marmotini	ANCESTRAL SPECIES	28	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00390000009895.i.b.a	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Alpin marmot	MODERN SPECIES	3	C2CD3 (ENSMMMG00000010449)	PPME1 (ENSMMMG00000010421) #7	P4HA3 (ENSMMMG00000010398) #8	ENSMMMG00000010391	PGM2L1 (ENSMMMG00000010377) #9	KCNE3 (ENSMMMG00000010356) #10	ENSMMMG00000010334 #12	CHRDL2 (ENSMMMG00000010297) #13	ENSMMMG00000010292	RNF169 (ENSMMMG00000010273) #14	XRRA1 (ENSMMMG00000010212) #15	SPCS2 (ENSMMMG00000010185) #16	NEU3 (ENSMMMG00000010144) #17	SLCO2B1 (ENSMMMG00000010020) #19	ARRB1 (ENSMMMG00000009891) #21	RPS3 (ENSMMMG00000009823) #22	GDPD5 (ENSMMMG00000009761) #25	SERPINH1 (ENSMMMG00000009745) #26	MAP6 (ENSMMMG00000009732) #27	MOGAT2 (ENSMMMG00000009708) #28	DGAT2 (ENSMMMG00000009694) #29	UVRAG (ENSMMMG00000009669) #30	WNT11 (ENSMMMG00000009631) #31	GVQW3 (ENSMMMG00000009582)	EMSY (ENSMMMG00000009455) #33	LRRC32 (ENSMMMG00000009408) #34	ENSMMMG00000009326	TSKU (ENSMMMG00000009316) #35	ACER3 (ENSMMMG00000009260) #36	B3GNT6 (ENSMMMG00000009247) #37	CAPN5 (ENSMMMG00000009202)
Marmotini_b	ANCESTRAL SPECIES	13	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00390000009895.i.b.a	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.t #32	ENSGT00530000063516.a.a.d ##32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	48						CHRDL2 (ENSUPAG00010013837) #13	ENSUPAG00010013830	RNF169 (ENSUPAG00010013817) #14	XRRA1 (ENSUPAG00010013791) #15	ENSUPAG00010013754 #16	ENSUPAG00010013749	OR2AT4 (ENSUPAG00010013744) #18	SLCO2B1 (ENSUPAG00010013587) #19	TPBGL (ENSUPAG00010013579) #20	ARRB1 (ENSUPAG00010013533) #21	RPS3 (ENSUPAG00010013480) #22	KLHL35 (ENSUPAG00010013466) #24	GDPD5 (ENSUPAG00010013418) #25	SERPINH1 (ENSUPAG00010013397) #26	ENSUPAG00010013392	ENSUPAG00010013378 #27	MOGAT2 (ENSUPAG00010013360) #28	DGAT2 (ENSUPAG00010013352) #29	UVRAG (ENSUPAG00010013333) #30	WNT11 (ENSUPAG00010013326) #31	THAP12 (ENSUPAG00010013320) #32	ENSUPAG00010013311 ##32	GVQW3 (ENSUPAG00010013303)	EMSY (ENSUPAG00010013019) #33	ENSUPAG00010013002	LRRC32 (ENSUPAG00010012993) #34
Arctic ground squirrel	MODERN SPECIES	165															ENSUPAG00010000844	ENSUPAG00010000834 #22	LRRTM1 (ENSUPAG00010000825)	CTNNA2 (ENSUPAG00010000499)	ENSUPAG00010000280	REG1A (ENSUPAG00010000234)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	1	P2RY14 (ENSSVLG00005007959)	GPR87 (ENSSVLG00005007934)	P2RY13 (ENSSVLG00005007907)	P2RY12 (ENSSVLG00005007889)	MED12L (ENSSVLG00005007792)	IGSF10 (ENSSVLG00005007686)	AADAC (ENSSVLG00005007632)	SUCNR1 (ENSSVLG00005007593)	MBNL1 (ENSSVLG00005007413)	ENSSVLG00005007281	P2RY1 (ENSSVLG00005007265)	RAP2B (ENSSVLG00005007246)	ARHGEF26 (ENSSVLG00005007133)	DHX36 (ENSSVLG00005007041)	GPR149 (ENSSVLG00005006960)	ENSSVLG00005006949 #22	MME (ENSSVLG00005006865)	STRIT1 (ENSSVLG00005006829)	PLCH1 (ENSSVLG00005006514)	ENSSVLG00005006455	C3orf33 (ENSSVLG00005006407)	SLC33A1 (ENSSVLG00005006332)	GMPS (ENSSVLG00005006221)	ENSSVLG00005006157	KCNAB1 (ENSSVLG00005005761)	ENSSVLG00005005598	TIPARP (ENSSVLG00005005579)	LEKR1 (ENSSVLG00005005558)	CCNL1 (ENSSVLG00005005434)	ENSSVLG00005005378	PTX3 (ENSSVLG00005005353)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005008292	BCL2A1 (ENSSVLG00005008264)	MTHFS (ENSSVLG00005008240)	MINAR1 (ENSSVLG00005008210)	TMED3 (ENSSVLG00005008188)	ANKRD34C (ENSSVLG00005008176)	ENSSVLG00005008153	RASGRF1 (ENSSVLG00005007962)	CTSH (ENSSVLG00005007841)	MORF4L1 (ENSSVLG00005007603)	ADAMTS7 (ENSSVLG00005007537)	TBC1D2B (ENSSVLG00005007497)	SH2D7 (ENSSVLG00005007466)	CIB2 (ENSSVLG00005007403)	ENSSVLG00005007289	ENSSVLG00005007245 #22	ENSSVLG00005007234	ACSBG1 (ENSSVLG00005007166)	DNAJA4 (ENSSVLG00005007123)	SKIC8 (ENSSVLG00005007085)	CRABP1 (ENSSVLG00005007052)	IREB2 (ENSSVLG00005007016)	HYKK (ENSSVLG00005006951)	PSMA4 (ENSSVLG00005006789)	CHRNA5 (ENSSVLG00005006742)	CHRNA3 (ENSSVLG00005006641)	CHRNB4 (ENSSVLG00005006614)	ENSSVLG00005006463	FBXO22 (ENSSVLG00005006425)	NRG4 (ENSSVLG00005006386)	TMEM266 (ENSSVLG00005006361)
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005022283	ENSSVLG00005022267	ENSSVLG00005022247	ENSSVLG00005022204	ENSSVLG00005022167	ENSSVLG00005022130	ENSSVLG00005022080	ENSSVLG00005022061	ENSSVLG00005022025	ENSSVLG00005022009	ENSSVLG00005021992	ENSSVLG00005021975	SPIN4 (ENSSVLG00005021964)	ARHGEF9 (ENSSVLG00005021404)	ENSSVLG00005021257	ENSSVLG00005021158 #22	AMER1 (ENSSVLG00005021139)	ENSSVLG00005021103	MTMR8 (ENSSVLG00005020958)	ENSSVLG00005020905	ENSSVLG00005020783	ZC4H2 (ENSSVLG00005020732)	ENSSVLG00005020704	ENSSVLG00005020675	ENSSVLG00005020634	ZC3H12B (ENSSVLG00005020578)	ENSSVLG00005020314	ENSSVLG00005020269	MSN (ENSSVLG00005020199)	ENSSVLG00005020160	ENSSVLG00005020115
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005020056	ENSSVLG00005020086	ENSSVLG00005020230	ENSSVLG00005020246	ENSSVLG00005020262	CHRDL2 (ENSSVLG00005020306) #13	ENSSVLG00005020360	XRRA1 (ENSSVLG00005020739) #15	ENSSVLG00005021124 #16	ENSSVLG00005021188	ENSSVLG00005021281	OR2AT4 (ENSSVLG00005021320) #18	SLCO2B1 (ENSSVLG00005021400) #19	TPBGL (ENSSVLG00005021827) #20	ENSSVLG00005021867 #21	ENSSVLG00005022121 #22	KLHL35 (ENSSVLG00005022223) #24	GDPD5 (ENSSVLG00005022336) #25	SERPINH1 (ENSSVLG00005022497) #26	MAP6 (ENSSVLG00005022557) #27	MOGAT2 (ENSSVLG00005022595) #28	DGAT2 (ENSSVLG00005022688) #29	UVRAG (ENSSVLG00005022785) #30	WNT11 (ENSSVLG00005022863) #31	THAP12 (ENSSVLG00005022917) #32	GVQW3 (ENSSVLG00005022970)	EMSY (ENSSVLG00005023093) #33	LRRC32 (ENSSVLG00005023371) #34	ENSSVLG00005023498	ENSSVLG00005023846	TSKU (ENSSVLG00005023871) #35
Eurasian red squirrel	MODERN SPECIES	16	NMBR (ENSSVLG00005018755)	GJE1 (ENSSVLG00005018719)	VTA1 (ENSSVLG00005018530)	ADGRG6 (ENSSVLG00005017461)	HIVEP2 (ENSSVLG00005017320)	AIG1 (ENSSVLG00005017202)	ADAT2 (ENSSVLG00005017149)	PEX3 (ENSSVLG00005017100)	FUCA2 (ENSSVLG00005017059)	PHACTR2 (ENSSVLG00005016689)	LTV1 (ENSSVLG00005016622)	ZC2HC1B (ENSSVLG00005016528)	PLAGL1 (ENSSVLG00005016506)	SF3B5 (ENSSVLG00005016490)	STX11 (ENSSVLG00005016470)	ENSSVLG00005016411 #22	UTRN (ENSSVLG00005016150)	EPM2A (ENSSVLG00005016024)	FBXO30 (ENSSVLG00005016005)	SHPRH (ENSSVLG00005015321)	ENSSVLG00005015257	GRM1 (ENSSVLG00005015002)	ENSSVLG00005014957	ADGB (ENSSVLG00005014586)	STXBP5 (ENSSVLG00005014456)	SAMD5 (ENSSVLG00005014384)	ENSSVLG00005014345	SASH1 (ENSSVLG00005014292)	UST (ENSSVLG00005014236)	ENSSVLG00005014219	TAB2 (ENSSVLG00005014149)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Equus	ANCESTRAL SPECIES	15	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Donkey	MODERN SPECIES	12	KCNE3 (ENSEASG00005038189) #10	LIPT2 (ENSEASG00005017860) #11	ENSEASG00005017856 #12	CHRDL2 (ENSEASG00005017832) #13	RNF169 (ENSEASG00005038773) #14	XRRA1 (ENSEASG00005017820) #15	ENSEASG00005017816 #16	NEU3 (ENSEASG00005017815) #17	ENSEASG00005017814	OR2AT4 (ENSEASG00005014267) #18	ENSEASG00005036702	ENSEASG00005035225	SLCO2B1 (ENSEASG00005014263) #19	TPBGL (ENSEASG00005025170) #20	ARRB1 (ENSEASG00005014253) #21	RPS3 (ENSEASG00005014248) #22	KLHL35 (ENSEASG00005014246) #24	GDPD5 (ENSEASG00005014243) #25	SERPINH1 (ENSEASG00005014240) #26	MAP6 (ENSEASG00005014238) #27	MOGAT2 (ENSEASG00005014230) #28	ENSEASG00005014228 #29	UVRAG (ENSEASG00005014226) #30	WNT11 (ENSEASG00005014224) #31	THAP12 (ENSEASG00005014222) #32	GVQW3 (ENSEASG00005026325)	EMSY (ENSEASG00005014219) #33	LRRC32 (ENSEASG00005014217) #34	ENSEASG00005014216	TSKU (ENSEASG00005028507) #35	ENSEASG00005037031 #36
Horse	DUPLICATION
Horse	MODERN SPECIES	28	PPME1 (ENSECAG00000010756) #7	P4HA3 (ENSECAG00000006917) #8	PGM2L1 (ENSECAG00000018803) #9	KCNE3 (ENSECAG00000007379) #10	LIPT2 (ENSECAG00000017517) #11	POLD3 (ENSECAG00000012624)	CHRDL2 (ENSECAG00000011897) #13	RNF169 (ENSECAG00000010781) #14	XRRA1 (ENSECAG00000007758) #15	SPCS2 (ENSECAG00000007179) #16	NEU3 (ENSECAG00000006601) #17	ENSECAG00000059146	TPBGL (ENSECAG00000059109) #20	SLCO2B1 (ENSECAG00000024423) #19	ARRB1 (ENSECAG00000017459) #21	RPS3 (ENSECAG00000013915) #22	KLHL35 (ENSECAG00000013664) #24	GDPD5 (ENSECAG00000010098) #25	SERPINH1 (ENSECAG00000004871) #26	MAP6 (ENSECAG00000004615) #27	MOGAT2 (ENSECAG00000025135) #28	DGAT2 (ENSECAG00000024847) #29	ENSECAG00000058058	ENSECAG00000018259	UVRAG (ENSECAG00000023818) #30	WNT11 (ENSECAG00000022188) #31	THAP12 (ENSECAG00000021982) #32	GVQW3 (ENSECAG00000046273)	EMSY (ENSECAG00000020064) #33	LRRC32 (ENSECAG00000019895) #34	ENSECAG00000038312
Horse	MODERN SPECIES	27	STAT2 (ENSECAG00000022326)	TIMELESS (ENSECAG00000002892)	MIP (ENSECAG00000008856)	SPRYD4 (ENSECAG00000008889)	GLS2 (ENSECAG00000008933)	RBMS2 (ENSECAG00000013470)	BAZ2A (ENSECAG00000018243)	ATP5F1B (ENSECAG00000022627)	PTGES3 (ENSECAG00000013127)	ENSECAG00000015242	ENSECAG00000015297	HSD17B6 (ENSECAG00000016761)	ENSECAG00000050633	ENSECAG00000036993	ENSECAG00000051324	ENSECAG00000031430 #22	ENSECAG00000029773	SDR9C7 (ENSECAG00000018703)	ENSECAG00000038236	ENSECAG00000028933	ENSECAG00000048525	GPR182 (ENSECAG00000049899)	ZBTB39 (ENSECAG00000006101)	ENSECAG00000035776	MYO1A (ENSECAG00000021228)	NEMP1 (ENSECAG00000023977)	NAB2 (ENSECAG00000006453)	STAT6 (ENSECAG00000008705)	LRP1 (ENSECAG00000012166)	NXPH4 (ENSECAG00000006133)	SHMT2 (ENSECAG00000021295)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Megabat	MODERN SPECIES	788															ARRB1 (ENSPVAG00000011267) #21	RPS3 (ENSPVAG00000011271) #22	KLHL35 (ENSPVAG00000011274) #24	GDPD5 (ENSPVAG00000011275) #25	SERPINH1 (ENSPVAG00000011278) #26	MAP6 (ENSPVAG00000011280) #27	MOGAT2 (ENSPVAG00000011283) #28	DGAT2 (ENSPVAG00000011285) #29	UVRAG (ENSPVAG00000011287) #30	WNT11 (ENSPVAG00000011291) #31
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Greater horseshoe bat	MODERN SPECIES	2	LIPT2 (ENSRFEG00010016489) #11	POLD3 (ENSRFEG00010016519)	ENSRFEG00010016605	CHRDL2 (ENSRFEG00010016638) #13	RNF169 (ENSRFEG00010016892) #14	XRRA1 (ENSRFEG00010016995) #15	SPCS2 (ENSRFEG00010017525) #16	NEU3 (ENSRFEG00010017632) #17	ENSRFEG00010017649 #18	ENSRFEG00010017695 #18	ENSRFEG00010017708	ENSRFEG00010017732	SLCO2B1 (ENSRFEG00010017798) #19	TPBGL (ENSRFEG00010018053) #20	ARRB1 (ENSRFEG00010018085) #21	RPS3 (ENSRFEG00010018171) #22	KLHL35 (ENSRFEG00010018271) #24	GDPD5 (ENSRFEG00010018359) #25	SERPINH1 (ENSRFEG00010018606) #26	MAP6 (ENSRFEG00010018658) #27	MOGAT2 (ENSRFEG00010018707) #28	DGAT2 (ENSRFEG00010018775) #29	UVRAG (ENSRFEG00010018929) #30	ENSRFEG00010019042	ENSRFEG00010019083	WNT11 (ENSRFEG00010019130) #31	THAP12 (ENSRFEG00010019170) #32	GVQW3 (ENSRFEG00010019199)	EMSY (ENSRFEG00010019268) #33	LRRC32 (ENSRFEG00010019506) #34	TSKU (ENSRFEG00010019575) #35
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1429															ENSMLUG00000015843	ENSMLUG00000026956 #22
Microbat	MODERN SPECIES	1999																ENSMLUG00000025123 #22
Microbat	MODERN SPECIES	1373													TPBGL (ENSMLUG00000008995) #20	ARRB1 (ENSMLUG00000028342) #21	ENSMLUG00000028728	RPS3 (ENSMLUG00000004079) #22	KLHL35 (ENSMLUG00000004083) #24	GDPD5 (ENSMLUG00000004089) #25	SERPINH1 (ENSMLUG00000004105) #26	MAP6 (ENSMLUG00000004112) #27	MOGAT2 (ENSMLUG00000001572) #28	ENSMLUG00000024749	ENSMLUG00000025797	DGAT2 (ENSMLUG00000017447) #29	ENSMLUG00000025262	UVRAG (ENSMLUG00000017450) #30
Carnivora	ANCESTRAL SPECIES	21	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Felidae	ANCESTRAL SPECIES		ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Panthera	ANCESTRAL SPECIES	23	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Tiger	MODERN SPECIES	152	UCP3 (ENSPTIG00000010500)	C2CD3 (ENSPTIG00000006117)	PPME1 (ENSPTIG00000019950) #7	P4HA3 (ENSPTIG00000019317) #8	ENSPTIG00000006901	PGM2L1 (ENSPTIG00000018629) #9	KCNE3 (ENSPTIG00000006865) #10	POLD3 (ENSPTIG00000016047)	CHRDL2 (ENSPTIG00000013187) #13	RNF169 (ENSPTIG00000012006) #14	XRRA1 (ENSPTIG00000006459) #15	SPCS2 (ENSPTIG00000002921) #16	NEU3 (ENSPTIG00000019876) #17	SLCO2B1 (ENSPTIG00000017944) #19	ARRB1 (ENSPTIG00000016095) #21	RPS3 (ENSPTIG00000012777) #22	ENSPTIG00000012295 #24	GDPD5 (ENSPTIG00000008012) #25	ENSPTIG00000007424 #26	ENSPTIG00000007135 #27	MOGAT2 (ENSPTIG00000005726) #28	DGAT2 (ENSPTIG00000021220) #29	ENSPTIG00000020523 #30
Panthera_a	ANCESTRAL SPECIES	24	ENSGT00910000147753	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
lion	DUPLICATION
lion	MODERN SPECIES	6	THAP10 (ENSPLOG00000004291)	LRRC49 (ENSPLOG00000004239)	THSD4 (ENSPLOG00000004187)	NR2E3 (ENSPLOG00000004121)	MYO9A (ENSPLOG00000004099)	SENP8 (ENSPLOG00000004081)	GRAMD2A (ENSPLOG00000004063)	PKM (ENSPLOG00000004017)	PARP6 (ENSPLOG00000003979)	CELF6 (ENSPLOG00000003887)	HEXA (ENSPLOG00000003841)	TMEM202 (ENSPLOG00000003823)	ARIH1 (ENSPLOG00000003791)	BBS4 (ENSPLOG00000003760)	ADPGK (ENSPLOG00000003737)	ENSPLOG00000003714 #22	NEO1 (ENSPLOG00000003569)	HCN4 (ENSPLOG00000003478)	REC114 (ENSPLOG00000003447)	NPTN (ENSPLOG00000003402)	ENSPLOG00000003377	INSYN1 (ENSPLOG00000003366)	TBC1D21 (ENSPLOG00000003301)	LOXL1 (ENSPLOG00000003247)	STOML1 (ENSPLOG00000003202)	PML (ENSPLOG00000003050)	ISLR2 (ENSPLOG00000002981)	ISLR (ENSPLOG00000002968)	ENSPLOG00000002950	CCDC33 (ENSPLOG00000002847)	CYP11A1 (ENSPLOG00000002791)
lion	MODERN SPECIES	10	PGM2L1 (ENSPLOG00000007360) #9	ENSPLOG00000007335	KCNE3 (ENSPLOG00000007327) #10	LIPT2 (ENSPLOG00000007304) #11	POLD3 (ENSPLOG00000007284)	CHRDL2 (ENSPLOG00000007211) #13	RNF169 (ENSPLOG00000007163) #14	XRRA1 (ENSPLOG00000007091) #15	SPCS2 (ENSPLOG00000006952) #16	NEU3 (ENSPLOG00000006924) #17	ENSPLOG00000006910	OR2AT4 (ENSPLOG00000006896) #18	SLCO2B1 (ENSPLOG00000006678) #19	TPBGL (ENSPLOG00000006600) #20	ARRB1 (ENSPLOG00000006514) #21	RPS3 (ENSPLOG00000006386) #22	KLHL35 (ENSPLOG00000006330) #24	GDPD5 (ENSPLOG00000006203) #25	SERPINH1 (ENSPLOG00000006124) #26	MAP6 (ENSPLOG00000006086) #27	MOGAT2 (ENSPLOG00000006057) #28	DGAT2 (ENSPLOG00000005990) #29	UVRAG (ENSPLOG00000005912) #30	WNT11 (ENSPLOG00000005866) #31	THAP12 (ENSPLOG00000005843) #32	GVQW3 (ENSPLOG00000005758)	EMSY (ENSPLOG00000005554) #33	LRRC32 (ENSPLOG00000005396) #34	ENSPLOG00000005376	ENSPLOG00000005358	ENSPLOG00000005339
leopard	DUPLICATION
leopard	MODERN SPECIES	7	LRRC49 (ENSPPRG00000023003)	THSD4 (ENSPPRG00000022730)	NR2E3 (ENSPPRG00000000927)	ENSPPRG00000001103	MYO9A (ENSPPRG00000007767)	SENP8 (ENSPPRG00000016555)	GRAMD2A (ENSPPRG00000008327)	PKM (ENSPPRG00000012428)	PARP6 (ENSPPRG00000013821)	CELF6 (ENSPPRG00000021783)	HEXA (ENSPPRG00000024022)	TMEM202 (ENSPPRG00000023583)	ARIH1 (ENSPPRG00000023431)	BBS4 (ENSPPRG00000023101)	ADPGK (ENSPPRG00000022888)	ENSPPRG00000000760 #22	NEO1 (ENSPPRG00000001880)	HCN4 (ENSPPRG00000002940)	REC114 (ENSPPRG00000003630)	NPTN (ENSPPRG00000005655)	CD276 (ENSPPRG00000007120)	INSYN1 (ENSPPRG00000007414)	TBC1D21 (ENSPPRG00000007945)	LOXL1 (ENSPPRG00000008323)	STOML1 (ENSPPRG00000009831)	PML (ENSPPRG00000014030)	ISLR (ENSPPRG00000017470)	STRA6 (ENSPPRG00000022892)	CCDC33 (ENSPPRG00000001398)	CYP11A1 (ENSPPRG00000001983)	SEMA7A (ENSPPRG00000003868)
leopard	MODERN SPECIES	17	ENSPPRG00000019390	PGM2L1 (ENSPPRG00000012685) #9	ENSPPRG00000019374	KCNE3 (ENSPPRG00000019344) #10	LIPT2 (ENSPPRG00000012003) #11	POLD3 (ENSPPRG00000011534)	CHRDL2 (ENSPPRG00000009765) #13	RNF169 (ENSPPRG00000008146) #14	XRRA1 (ENSPPRG00000007628) #15	SPCS2 (ENSPPRG00000005824) #16	NEU3 (ENSPPRG00000004096) #17	ENSPPRG00000018979	SLCO2B1 (ENSPPRG00000002453) #19	TPBGL (ENSPPRG00000001225) #20	ARRB1 (ENSPPRG00000000797) #21	RPS3 (ENSPPRG00000021200) #22	KLHL35 (ENSPPRG00000016187) #24	GDPD5 (ENSPPRG00000014276) #25	SERPINH1 (ENSPPRG00000010542) #26	ENSPPRG00000010162 #27	MOGAT2 (ENSPPRG00000009822) #28	DGAT2 (ENSPPRG00000009451) #29	UVRAG (ENSPPRG00000007658) #30	WNT11 (ENSPPRG00000006331) #31	THAP12 (ENSPPRG00000005378) #32	GVQW3 (ENSPPRG00000018362)	EMSY (ENSPPRG00000004765) #33	LRRC32 (ENSPPRG00000014260) #34	ENSPPRG00000013613	ENSPPRG00000012568	TSKU (ENSPPRG00000017969) #35
Cat	DUPLICATION
Cat	MODERN SPECIES	237	LRRC49 (ENSFCAG00000025525)	THSD4 (ENSFCAG00000010030)	NR2E3 (ENSFCAG00000031082)	MYO9A (ENSFCAG00000023404)	SENP8 (ENSFCAG00000000650)	GRAMD2A (ENSFCAG00000000651)	ENSFCAG00000000653	ENSFCAG00000001853	PARP6 (ENSFCAG00000028393)	CELF6 (ENSFCAG00000016249)	HEXA (ENSFCAG00000022167)	TMEM202 (ENSFCAG00000000656)	ARIH1 (ENSFCAG00000018568)	BBS4 (ENSFCAG00000031015)	ADPGK (ENSFCAG00000012250)	ENSFCAG00000029480 #22	NEO1 (ENSFCAG00000005224)	HCN4 (ENSFCAG00000005227)	REC114 (ENSFCAG00000007426)	NPTN (ENSFCAG00000006343)	CD276 (ENSFCAG00000006344)	INSYN1 (ENSFCAG00000037097)	TBC1D21 (ENSFCAG00000003096)	LOXL1 (ENSFCAG00000011546)	STOML1 (ENSFCAG00000022450)	PML (ENSFCAG00000003098)	ISLR2 (ENSFCAG00000034171)	ISLR (ENSFCAG00000028071)	STRA6 (ENSFCAG00000010865)	CCDC33 (ENSFCAG00000010868)	CYP11A1 (ENSFCAG00000010871)
Cat	MODERN SPECIES	241	P4HA3 (ENSFCAG00000007938) #8	PGM2L1 (ENSFCAG00000007942) #9	ENSFCAG00000025621	KCNE3 (ENSFCAG00000007946) #10	LIPT2 (ENSFCAG00000005135) #11	POLD3 (ENSFCAG00000008169)	CHRDL2 (ENSFCAG00000008172) #13	RNF169 (ENSFCAG00000043917) #14	XRRA1 (ENSFCAG00000014638) #15	SPCS2 (ENSFCAG00000022532) #16	NEU3 (ENSFCAG00000033977) #17	ENSFCAG00000036568	OR2AT4 (ENSFCAG00000029673) #18	SLCO2B1 (ENSFCAG00000011940) #19	ARRB1 (ENSFCAG00000011941) #21	RPS3 (ENSFCAG00000011942) #22	KLHL35 (ENSFCAG00000012545) #24	GDPD5 (ENSFCAG00000011943) #25	SERPINH1 (ENSFCAG00000011944) #26	MAP6 (ENSFCAG00000023444) #27	MOGAT2 (ENSFCAG00000004632) #28	DGAT2 (ENSFCAG00000040215) #29	UVRAG (ENSFCAG00000022180) #30	WNT11 (ENSFCAG00000025418) #31	THAP12 (ENSFCAG00000006764) #32	GVQW3 (ENSFCAG00000025300)	EMSY (ENSFCAG00000012003) #33	LRRC32 (ENSFCAG00000012007) #34	ENSFCAG00000025549	TSKU (ENSFCAG00000041968) #35	ACER3 (ENSFCAG00000031003) #36
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Canidae	ANCESTRAL SPECIES	17	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00550000074832.ab
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.w	ENSGT00940000163113 #18	ENSGT00940000162049.x	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00550000074832.ab
Dingo	MODERN SPECIES	245																RPS3 (ENSCAFG00020002102) #22	KLHL35 (ENSCAFG00020002093) #24	GDPD5 (ENSCAFG00020002063) #25	SERPINH1 (ENSCAFG00020002046) #26	ENSCAFG00020002018 #27	MOGAT2 (ENSCAFG00020002004) #28	ENSCAFG00020001974 #29	UVRAG (ENSCAFG00020001967) #30	WNT11 (ENSCAFG00020001959) #31	THAP12 (ENSCAFG00020001916) #32	GVQW3 (ENSCAFG00020001914)	EMSY (ENSCAFG00020001634) #33	LRRC32 (ENSCAFG00020001532) #34	ENSCAFG00020001515	ENSCAFG00020001492	TSKU (ENSCAFG00020001488) #35
Dog	DUPLICATION
Dog	MODERN SPECIES	23	LRRC49 (ENSCAFG00845022590)	THSD4 (ENSCAFG00845022941)	NR2E3 (ENSCAFG00845023002)	MYO9A (ENSCAFG00845023099)	SENP8 (ENSCAFG00845023365)	GRAMD2A (ENSCAFG00845023412)	PKM (ENSCAFG00845023630)	PARP6 (ENSCAFG00845024025)	CELF6 (ENSCAFG00845024666)	HEXA (ENSCAFG00845025040)	ENSCAFG00845025359	ARIH1 (ENSCAFG00845025391)	ENSCAFG00845025503	ENSCAFG00845025660	NEO1 (ENSCAFG00845025873)	ENSCAFG00845026931 #22	HCN4 (ENSCAFG00845027098)	ENSCAFG00845027454	NPTN (ENSCAFG00845027606)	CD276 (ENSCAFG00845027858)	INSYN1 (ENSCAFG00845028026)	TBC1D21 (ENSCAFG00845028109)	LOXL1 (ENSCAFG00845028254)	STOML1 (ENSCAFG00845028377)	PML (ENSCAFG00845028697)	ISLR2 (ENSCAFG00845028834)	ISLR (ENSCAFG00845028845)	STRA6 (ENSCAFG00845028892)	CCDC33 (ENSCAFG00845029058)	CYP11A1 (ENSCAFG00845029140)	SEMA7A (ENSCAFG00845029262)
Dog	MODERN SPECIES	13	PGM2L1 (ENSCAFG00845006417) #9	KCNE3 (ENSCAFG00845006390) #10	LIPT2 (ENSCAFG00845006375) #11	ENSCAFG00845006319	CHRDL2 (ENSCAFG00845006210) #13	RNF169 (ENSCAFG00845006177) #14	XRRA1 (ENSCAFG00845006118) #15	SPCS2 (ENSCAFG00845006071) #16	NEU3 (ENSCAFG00845006035) #17	OR2AT2 (ENSCAFG00845012453)	OR2AT2B (ENSCAFG00845012435) #18	ENSCAFG00845012420	SLCO2B1 (ENSCAFG00845012322) #19	ENSCAFG00845012257	ARRB1 (ENSCAFG00845011997) #21	RPS3 (ENSCAFG00845011844) #22	KLHL35 (ENSCAFG00845011797) #24	GDPD5 (ENSCAFG00845011562) #25	SERPINH1 (ENSCAFG00845011365) #26	MAP6 (ENSCAFG00845011305) #27	MOGAT2 (ENSCAFG00845011232) #28	DGAT2 (ENSCAFG00845011120) #29	UVRAG (ENSCAFG00845010859) #30	WNT11 (ENSCAFG00845010773) #31	THAP12 (ENSCAFG00845010711) #32	GVQW3 (ENSCAFG00845010675)	LRRC32 (ENSCAFG00845010636) #34	ENSCAFG00845010608	ENSCAFG00845010588	ENSCAFG00845010554	TSKU (ENSCAFG00845010425) #35
Red fox	DUPLICATION
Red fox	MODERN SPECIES		MYO9A (ENSVVUG00000015366)	SENP8 (ENSVVUG00000018219)	GRAMD2A (ENSVVUG00000018223)	PKM (ENSVVUG00000018228)	ENSVVUG00000018232	PARP6 (ENSVVUG00000018234)	ENSVVUG00000018262	ENSVVUG00000018268	HEXA (ENSVVUG00000018275)	TMEM202 (ENSVVUG00000018304)	ENSVVUG00000018312	ARIH1 (ENSVVUG00000018321)	ENSVVUG00000018350	ADPGK (ENSVVUG00000018412)	NEO1 (ENSVVUG00000018428)	ENSVVUG00000018431 #22	ENSVVUG00000018434	HCN4 (ENSVVUG00000018438)	REC114 (ENSVVUG00000018443)	NPTN (ENSVVUG00000018450)	ENSVVUG00000018459	CD276 (ENSVVUG00000018466)	INSYN1 (ENSVVUG00000018472)	TBC1D21 (ENSVVUG00000018482)	ENSVVUG00000018485	STOML1 (ENSVVUG00000018494)	ENSVVUG00000018496	ISLR2 (ENSVVUG00000018502)	ISLR (ENSVVUG00000018503)	STRA6 (ENSVVUG00000018509)	CCDC33 (ENSVVUG00000018528)
Red fox	MODERN SPECIES	81	P4HA3 (ENSVVUG00000024443) #8	PGM2L1 (ENSVVUG00000024420) #9	KCNE3 (ENSVVUG00000024415) #10	LIPT2 (ENSVVUG00000024412) #11	POLD3 (ENSVVUG00000024403)	CHRDL2 (ENSVVUG00000024393) #13	RNF169 (ENSVVUG00000024386) #14	XRRA1 (ENSVVUG00000024378) #15	SPCS2 (ENSVVUG00000024376) #16	NEU3 (ENSVVUG00000024375) #17	ENSVVUG00000024373	OR2AT4 (ENSVVUG00000024372) #18	ENSVVUG00000024368	SLCO2B1 (ENSVVUG00000024363) #19	ARRB1 (ENSVVUG00000024357) #21	RPS3 (ENSVVUG00000024353) #22	KLHL35 (ENSVVUG00000024352) #24	GDPD5 (ENSVVUG00000024349) #25	SERPINH1 (ENSVVUG00000024343) #26	MAP6 (ENSVVUG00000024341) #27	MOGAT2 (ENSVVUG00000024340) #28	DGAT2 (ENSVVUG00000024339) #29	UVRAG (ENSVVUG00000024337) #30	WNT11 (ENSVVUG00000024336) #31	THAP12 (ENSVVUG00000024332) #32	GVQW3 (ENSVVUG00000024331)	EMSY (ENSVVUG00000024307) #33	ENSVVUG00000024300	LRRC32 (ENSVVUG00000024297) #34	ENSVVUG00000024295	ENSVVUG00000024288
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Mustelinae	ANCESTRAL SPECIES	25	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
American mink	MODERN SPECIES	6	PPME1 (ENSNVIG00000022146) #7	P4HA3 (ENSNVIG00000022190) #8	PGM2L1 (ENSNVIG00000022233) #9	KCNE3 (ENSNVIG00000022255) #10	LIPT2 (ENSNVIG00000022257) #11	POLD3 (ENSNVIG00000022266)	CRDL2 (ENSNVIG00000022284) #13	RNF169 (ENSNVIG00000022325) #14	XRRA1 (ENSNVIG00000022332) #15	SPCS2 (ENSNVIG00000022377) #16	NEU3 (ENSNVIG00000022399) #17	OR2AT4 (ENSNVIG00000022405) #18	SLCO2B1 (ENSNVIG00000022418) #19	TPBGL (ENSNVIG00000022489) #20	ARRB1 (ENSNVIG00000022499) #21	RPS3 (ENSNVIG00000022524) #22	KLHL35 (ENSNVIG00000000027) #24	GDPD5 (ENSNVIG00000000058) #25	SERPINH1 (ENSNVIG00000000240) #26	MAP6 (ENSNVIG00000000278) #27	MOGAT2 (ENSNVIG00000000300) #28	DGAT2 (ENSNVIG00000000310) #29	UVRAG (ENSNVIG00000000349) #30	WNT11 (ENSNVIG00000000391) #31	ENSNVIG00000000416 #32	GVQW3 (ENSNVIG00000000425)	EMSY (ENSNVIG00000000431) #33	LRRC32 (ENSNVIG00000000538) #34	ENSNVIG00000000546	ENSNVIG00000000562	ENSNVIG00000000591
Ferret	MODERN SPECIES	294	PPME1 (ENSMPUG00000009348) #7	P4HA3 (ENSMPUG00000009330) #8	PGM2L1 (ENSMPUG00000009319) #9	KCNE3 (ENSMPUG00000019533) #10	LIPT2 (ENSMPUG00000009304) #11	POLD3 (ENSMPUG00000009299)	CHRDL2 (ENSMPUG00000009291) #13	RNF169 (ENSMPUG00000009279) #14	XRRA1 (ENSMPUG00000009266) #15	SPCS2 (ENSMPUG00000009261) #16	NEU3 (ENSMPUG00000009248) #17	OR2AT4 (ENSMPUG00000019531) #18	SLCO2B1 (ENSMPUG00000009234) #19	TPBGL (ENSMPUG00000019529) #20	ARRB1 (ENSMPUG00000009213) #21	RPS3 (ENSMPUG00000009197) #22	KLHL35 (ENSMPUG00000009085) #24	GDPD5 (ENSMPUG00000009066) #25	SERPINH1 (ENSMPUG00000009062) #26	MAP6 (ENSMPUG00000009054) #27	MOGAT2 (ENSMPUG00000009005) #28	DGAT2 (ENSMPUG00000008926) #29	UVRAG (ENSMPUG00000008808) #30	WNT11 (ENSMPUG00000008789) #31	THAP12 (ENSMPUG00000008784) #32	EMSY (ENSMPUG00000008766) #33	LRRC32 (ENSMPUG00000008762) #34	ENSMPUG00000008573	TSKU (ENSMPUG00000019527) #35	ACER3 (ENSMPUG00000008559) #36	CAPN5 (ENSMPUG00000008549)
Ursidae	ANCESTRAL SPECIES																	ENSGT00390000008610.a.b.a.b #22
Ursus	ANCESTRAL SPECIES																	ENSGT00390000008610.a.b.a.b #22
American black bear	MODERN SPECIES	5370																RPS3 (ENSUAMG00000021546) #22	GDPD5 (ENSUAMG00000021549) #25
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Camelidae	ANCESTRAL SPECIES	32	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT00970000197259	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35
Alpaca	MODERN SPECIES	5453																RPS3 (ENSVPAG00000011615) #22	KLHL35 (ENSVPAG00000011614) #24
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT00970000197259	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT00970000197259	ENSGT01030000234582.e.b.g.b.a.a.a.a.b #28	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.e.b.g.a.a #28	ENSGT01030000234582.e.b.g.a.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d
Siberian musk deer	MODERN SPECIES	1173	P4HA3 (ENSMMSG00000011730) #8	PGM2L1 (ENSMMSG00000011704) #9	KCNE3 (ENSMMSG00000011690) #10	LIPT2 (ENSMMSG00000011677) #11	ENSMMSG00000011605	CHRDL2 (ENSMMSG00000011519) #13	RNF169 (ENSMMSG00000011474) #14	XRRA1 (ENSMMSG00000011230) #15	ENSMMSG00000011190 #16	NEU3 (ENSMMSG00000011174) #17	OR2AT4 (ENSMMSG00000011148) #18	ENSMMSG00000011132	SLCO2B1 (ENSMMSG00000010784) #19	TPBGL (ENSMMSG00000010742) #20	ARRB1 (ENSMMSG00000010638) #21	RPS3 (ENSMMSG00000010456) #22	KLHL35 (ENSMMSG00000010389) #24	GDPD5 (ENSMMSG00000010257) #25	ENSMMSG00000010185 #26	ENSMMSG00000010133 #27	ENSMMSG00000010080 #28	ENSMMSG00000010044	ENSMMSG00000010002 #28	ENSMMSG00000009931 #28
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT00970000197259	ENSGT01030000234582.e.b.g.b.a.a.a.a.b #28	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.e.b.g.a.a #28	ENSGT01030000234582.e.b.g.a.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d
Bovinae	ANCESTRAL SPECIES	26	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT01030000234582.e.b.g.b.b #28	ENSGT01030000234582.e.b.g.b.a.b #28	ENSGT01030000234582.e.b.g.b.a.a.a.a.a.a #28	ENSGT00390000007473.d	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.e.b.g.a.a #28	ENSGT01030000234582.e.b.g.a.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31
American bison	MODERN SPECIES	3168									NEU3 (ENSBBBG00000022546) #17	ENSBBBG00000022551	OR2AT4 (ENSBBBG00000022555) #18	ENSBBBG00000022561	SLCO2B1 (ENSBBBG00000005968) #19	TPBGL (ENSBBBG00000005974) #20	ARRB1 (ENSBBBG00000022736) #21	RPS3 (ENSBBBG00000022815) #22	ENSBBBG00000022826 #24	GDPD5 (ENSBBBG00000022948) #25	SERPINH1 (ENSBBBG00000022977) #26	MAP6 (ENSBBBG00000023028) #27	ENSBBBG00000023058 #28	ENSBBBG00000023066 #28	ENSBBBG00000023073 #28	ENSBBBG00000023075 #28	ENSBBBG00000023080	ENSBBBG00000006059 #28	ENSBBBG00000006061	ENSBBBG00000023102	ENSBBBG00000023116 #28	ENSBBBG00000023136 #28	DGAT2 (ENSBBBG00000023160) #29
Bos	ANCESTRAL SPECIES	25	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT01100000263481.n.a.b.b.a.b.a.a.a.b	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT01030000234582.e.b.g.b.b #28	ENSGT01030000234582.e.b.g.b.a.b #28	ENSGT01030000234582.e.b.g.b.a.a.a.a.a.a #28	ENSGT00390000007473.d	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.e.b.g.a.a #28	ENSGT01030000234582.e.b.g.a.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31
Bos_b	ANCESTRAL SPECIES	40	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT01100000263481.n.a.b.b.a.b.a.a.a.b	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT00970000197259	ENSGT01030000234582.e.b.g.b.b #28	ENSGT01030000234582.e.b.g.b.a.a.a.a.b #28	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.e.b.g.a.b #28	ENSGT01030000234582.f.a.b #29
Cow	MODERN SPECIES	6	PGM2L1 (ENSBTAG00000000770) #9	KCNE3 (ENSBTAG00000011873) #10	LIPT2 (ENSBTAG00000008227) #11	POLD3 (ENSBTAG00000016869)	CHRDL2 (ENSBTAG00000021306) #13	RNF169 (ENSBTAG00000000727) #14	ENSBTAG00000054207	XRRA1 (ENSBTAG00000006610) #15	SPCS2 (ENSBTAG00000006644) #16	NEU3 (ENSBTAG00000025931) #17	OR2AT2C (ENSBTAG00000047344)	ENSBTAG00000048088	SLCO2B1 (ENSBTAG00000015596) #19	TPBGL (ENSBTAG00000019622) #20	ARRB1 (ENSBTAG00000020485) #21	RPS3 (ENSBTAG00000005620) #22	KLHL35 (ENSBTAG00000015087) #24	GDPD5 (ENSBTAG00000031777) #25	SERPINH1 (ENSBTAG00000001027) #26	MAP6 (ENSBTAG00000001028) #27	MOGAT2 (ENSBTAG00000049519) #28	ENSBTAG00000053794	ENSBTAG00000047111 #28	ENSBTAG00000017443 #28	ENSBTAG00000015091 #28	ENSBTAG00000052936	MOGAT2 (ENSBTAG00000037483) #28	UVRAG (ENSBTAG00000016355) #30	WNT11 (ENSBTAG00000010820) #31	THAP12 (ENSBTAG00000031609) #32	GVQW3 (ENSBTAG00000052297)
Hybrid Bos Indicus	MODERN SPECIES	6	PPME1 (ENSBIXG00005028331) #7	P4HA3 (ENSBIXG00005004876) #8	PGM2L1 (ENSBIXG00005028456) #9	KCNE3 (ENSBIXG00005028481) #10	LIPT2 (ENSBIXG00005002463) #11	ENSBIXG00005004912	CHRDL2 (ENSBIXG00005028567) #13	ENSBIXG00005028580	RNF169 (ENSBIXG00005028615) #14	XRRA1 (ENSBIXG00005004977) #15	SPCS2 (ENSBIXG00005002321) #16	NEU3 (ENSBIXG00005028847) #17	SLCO2B1 (ENSBIXG00005028960) #19	TPBGL (ENSBIXG00005005103) #20	ARRB1 (ENSBIXG00005001993) #21	RPS3 (ENSBIXG00005005177) #22	KLHL35 (ENSBIXG00005001838) #24	GDPD5 (ENSBIXG00005029191) #25	SERPINH1 (ENSBIXG00005001605) #26	MAP6 (ENSBIXG00005001586) #27	ENSBIXG00005010753	ENSBIXG00005010772 #28	ENSBIXG00005010874 #28	ENSBIXG00005010894	ENSBIXG00005005811 #28	ENSBIXG00005010939	ENSBIXG00005010950 #28	ENSBIXG00005010977	ENSBIXG00005010986 #28	DGAT2 (ENSBIXG00005011065) #29	WNT11 (ENSBIXG00005011138) #31
Bos_a	ANCESTRAL SPECIES	44	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT01100000263481.n.a.b.b.a.b.a.a.a.b	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT00970000197259
Wild yak	MODERN SPECIES	1503	PGM2L1 (ENSBMUG00000003154) #9	KCNE3 (ENSBMUG00000003174) #10	LIPT2 (ENSBMUG00000003209) #11	ENSBMUG00000003228	CHRDL2 (ENSBMUG00000003270) #13	RNF169 (ENSBMUG00000003301) #14	XRRA1 (ENSBMUG00000003408) #15	SPCS2 (ENSBMUG00000003427) #16	NEU3 (ENSBMUG00000003443) #17	ENSBMUG00000003461	OR2AT4 (ENSBMUG00000003471) #18	ENSBMUG00000003483	ENSBMUG00000003492	SLCO2B1 (ENSBMUG00000003583) #19	ARRB1 (ENSBMUG00000003695) #21	RPS3 (ENSBMUG00000003751) #22	KLHL35 (ENSBMUG00000003800) #24	GDPD5 (ENSBMUG00000003936) #25	SERPINH1 (ENSBMUG00000004021) #26	MAP6 (ENSBMUG00000004069) #27	ENSBMUG00000004128 #28
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	4	LIPT2 (ENSBGRG00000024650) #11	ENSBGRG00000024546	CHRDL2 (ENSBGRG00000024469) #13	ENSBGRG00000024433	RNF169 (ENSBGRG00000024385) #14	XRRA1 (ENSBGRG00000024307) #15	SPCS2 (ENSBGRG00000024243) #16	NEU3 (ENSBGRG00000024225) #17	ENSBGRG00000024218	OR2AT4 (ENSBGRG00000024199) #18	ENSBGRG00000024185	ENSBGRG00000024166	SLCO2B1 (ENSBGRG00000023872) #19	TPBGL (ENSBGRG00000023837) #20	ARRB1 (ENSBGRG00000023441) #21	RPS3 (ENSBGRG00000023214) #22	KLHL35 (ENSBGRG00000023155) #24	GDPD5 (ENSBGRG00000022949) #25	SERPINH1 (ENSBGRG00000022881) #26	ENSBGRG00000022851 #27	ENSBGRG00000022776 #28	ENSBGRG00000022758	ENSBGRG00000022742	ENSBGRG00000022520	ENSBGRG00000022491	OR4C12 (ENSBGRG00000022476)	ENSBGRG00000022382	ENSBGRG00000022353	ENSBGRG00000022324	ENSBGRG00000022314	ENSBGRG00000022282
Domestic yak	MODERN SPECIES	4	TRIM29 (ENSBGRG00000013713)	OAF (ENSBGRG00000013639)	POU2F3 (ENSBGRG00000013401)	TLCD5 (ENSBGRG00000013334)	ARHGEF12 (ENSBGRG00000012502)	GRIK4 (ENSBGRG00000012244)	ENSBGRG00000012217	TBCEL (ENSBGRG00000012161)	TECTA (ENSBGRG00000012059)	SC5D (ENSBGRG00000011853)	SORL1 (ENSBGRG00000011099)	ENSBGRG00000011053	UBASH3B (ENSBGRG00000010659)	CRTAM (ENSBGRG00000015363)	JHY (ENSBGRG00000015236)	ENSBGRG00000015174 #22	BSX (ENSBGRG00000015127)	ENSBGRG00000015071	HSPA8 (ENSBGRG00000014719)	CLMP (ENSBGRG00000014616)	GRAMD1B (ENSBGRG00000013095)	SCN3B (ENSBGRG00000012965)	ZNF202 (ENSBGRG00000012911)	ENSBGRG00000012876	SAAL1 (ENSBGRG00000012533)	TPH1 (ENSBGRG00000012473)	SERGEF (ENSBGRG00000012334)	KCNC1 (ENSBGRG00000012223)	OTOG (ENSBGRG00000011342)	USH1C (ENSBGRG00000010311)	ABCC8 (ENSBGRG00000009791)
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b.h #28	ENSGT01030000234582.e.b.g.b.b #28	ENSGT01030000234582.e.b.g.b.a.b #28	ENSGT01030000234582.e.b.g.b.a.a.a.a.a.a #28	ENSGT01030000234582.e.b.g.b.a.a.b #28	ENSGT01030000234582.e.b.g.a.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00390000009554 #33
Goat	MODERN SPECIES	6	P4HA3 (ENSCHIG00000021364) #8	PGM2L1 (ENSCHIG00000025872) #9	KCNE3 (ENSCHIG00000004672) #10	ENSCHIG00000008399	LIPT2 (ENSCHIG00000023926) #11	ENSCHIG00000023669	CHRDL2 (ENSCHIG00000015102) #13	RNF169 (ENSCHIG00000006555) #14	XRRA1 (ENSCHIG00000022337) #15	SPCS2 (ENSCHIG00000010577) #16	NEU3 (ENSCHIG00000025082) #17	ENSCHIG00000005983	OR2AT4 (ENSCHIG00000006169) #18	SLCO2B1 (ENSCHIG00000008646) #19	ARRB1 (ENSCHIG00000013620) #21	RPS3 (ENSCHIG00000012342) #22	KLHL35 (ENSCHIG00000024312) #24	GDPD5 (ENSCHIG00000014683) #25	SERPINH1 (ENSCHIG00000002757) #26	MAP6 (ENSCHIG00000023796) #27	ENSCHIG00000022165 #28	ENSCHIG00000016754 #28	ENSCHIG00000017465 #28	ENSCHIG00000016227 #28	ENSCHIG00000025677 #28	ENSCHIG00000015313 #28	DGAT2 (ENSCHIG00000010320) #29	UVRAG (ENSCHIG00000025967) #30	WNT11 (ENSCHIG00000021782) #31	ENSCHIG00000008621 #32	GVQW3 (ENSCHIG00000021697)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	6	KCNE3 (ENSOARG00020003867) #10	LIPT2 (ENSOARG00020003884) #11	POLD3 (ENSOARG00020003908)	CHRDL2 (ENSOARG00020003968) #13	RNF169 (ENSOARG00020004047) #14	XRRA1 (ENSOARG00020004106) #15	SPCS2 (ENSOARG00020004400) #16	NEU3 (ENSOARG00020004457) #17	SLCO2B1 (ENSOARG00020004500) #19	ENSOARG00020004621	OR2AT4 (ENSOARG00020004633) #18	ENSOARG00020004648	ENSOARG00020004670	TPBGL (ENSOARG00020004687) #20	ARRB1 (ENSOARG00020004714) #21	RPS3 (ENSOARG00020004797) #22	KLHL35 (ENSOARG00020004876) #24	GDPD5 (ENSOARG00020004944) #25	ENSOARG00020005102	SERPINH1 (ENSOARG00020005114) #26	MOGAT2 (ENSOARG00020005152) #28	ENSOARG00020005200 #28	ENSOARG00020005275 #28	ENSOARG00020005318 #28	ENSOARG00020005345 #28	ENSOARG00020005412 #28	DGAT2 (ENSOARG00020005462) #29	UVRAG (ENSOARG00020005557) #30	ENSOARG00020005653	ENSOARG00020005727	WNT11 (ENSOARG00020006304) #31
Rambouillet Sheep	MODERN SPECIES	10	ACKR2 (ENSOARG00020022667)	ENSOARG00020022643	ENSOARG00020022604	CCDC13 (ENSOARG00020022519)	HHATL (ENSOARG00020022483)	KLHL40 (ENSOARG00020022436)	ZBTB47 (ENSOARG00020022405)	ENSOARG00020022378	NKTR (ENSOARG00020022338)	SS18L2 (ENSOARG00020022299)	SEC22C (ENSOARG00020022269)	VIPR1 (ENSOARG00020021791)	LYZL4 (ENSOARG00020021737)	CCK (ENSOARG00020021710)	TRAK1 (ENSOARG00020019973)	ENSOARG00020019793 #22	ULK4 (ENSOARG00020019556)	CTNNB1 (ENSOARG00020019145)	ENSOARG00020018961	ENSOARG00020018919	RPL14 (ENSOARG00020018769)	ENTPD3 (ENSOARG00020018647)	EIF1B (ENSOARG00020018597)	MYRIP (ENSOARG00020018291)	MOBP (ENSOARG00020018246)	RPSA (ENSOARG00020018166)	ENSOARG00020018132	SLC25A38 (ENSOARG00020017915)	ENSOARG00020017853	CX3CR1 (ENSOARG00020017818)	ENSOARG00020017791
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES		KCNE3 (ENSCHYG00000003907) #10	LIPT2 (ENSCHYG00000003910) #11	POLD3 (ENSCHYG00000003916)	CHRDL2 (ENSCHYG00000003936) #13	RNF169 (ENSCHYG00000003956) #14	XRRA1 (ENSCHYG00000003983) #15	ENSCHYG00000004004 #16	NEU3 (ENSCHYG00000004022) #17	ENSCHYG00000004026	OR2AT4 (ENSCHYG00000004032) #18	ENSCHYG00000004041	ENSCHYG00000004045	SLCO2B1 (ENSCHYG00000004067) #19	TPBGL (ENSCHYG00000004162) #20	ARRB1 (ENSCHYG00000004204) #21	RPS3 (ENSCHYG00000004407) #22	KLHL35 (ENSCHYG00000004438) #24	GDPD5 (ENSCHYG00000004461) #25	SERPINH1 (ENSCHYG00000004527) #26	MAP6 (ENSCHYG00000004581) #27	ENSCHYG00000004593 #28	ENSCHYG00000004657 #28	ENSCHYG00000004681	ENSCHYG00000004687 #28	ENSCHYG00000004698 #28	ENSCHYG00000004707	ENSCHYG00000004726 #28	DGAT2 (ENSCHYG00000004776) #29	UVRAG (ENSCHYG00000004806) #30	WNT11 (ENSCHYG00000004966) #31	THAP12 (ENSCHYG00000004989) #32
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000017066	SCML2 (ENSCHYG00000016775)	CDKL5 (ENSCHYG00000016442)	RS1 (ENSCHYG00000016355)	PPEF1 (ENSCHYG00000016044)	ENSCHYG00000015917	ENSCHYG00000015895	PHKA2 (ENSCHYG00000014501)	ADGRG2 (ENSCHYG00000025589)	ENSCHYG00000025479	ENSCHYG00000025460	MAP3K15 (ENSCHYG00000025350)	SH3KBP1 (ENSCHYG00000024812)	BCLAF3 (ENSCHYG00000024575)	MAP7D2 (ENSCHYG00000024324)	ENSCHYG00000024281 #22	EIF1AX (ENSCHYG00000024205)	RPS6KA3 (ENSCHYG00000023911)	ENSCHYG00000023852	ENSCHYG00000023829	CNKSR2 (ENSCHYG00000023268)	KLHL34 (ENSCHYG00000023198)	SMPX (ENSCHYG00000023180)	MBTPS2 (ENSCHYG00000023135)	ENSCHYG00000023111	SMS (ENSCHYG00000022994)	PHEX (ENSCHYG00000022869)	ENSCHYG00000022855	DDX53 (ENSCHYG00000022828)	PTCHD1 (ENSCHYG00000022778)	PRDX4 (ENSCHYG00000022660)
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B.h.b.a #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.bb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Blue whale	MODERN SPECIES	19	PGM2L1 (ENSBMSG00010007245) #9	ENSBMSG00010007235 #10	LIPT2 (ENSBMSG00010007226) #11	POLD3 (ENSBMSG00010007215)	CHRDL2 (ENSBMSG00010007185) #13	RNF169 (ENSBMSG00010007157) #14	XRRA1 (ENSBMSG00010007133) #15	ENSBMSG00010007104 #16	NEU3 (ENSBMSG00010007095) #17	ENSBMSG00010007063	ENSBMSG00010007056	SLCO2B1 (ENSBMSG00010006926) #19	TPBGL (ENSBMSG00010006875) #20	ARRB1 (ENSBMSG00010006812) #21	KLHL35 (ENSBMSG00010006735) #24	RPS3 (ENSBMSG00010006696) #22	GDPD5 (ENSBMSG00010006559) #25	SERPINH1 (ENSBMSG00010006487) #26	MAP6 (ENSBMSG00010006468) #27	MOGAT2 (ENSBMSG00010006441) #28	DGAT2 (ENSBMSG00010006424) #29	UVRAG (ENSBMSG00010006403) #30	WNT11 (ENSBMSG00010006371) #31	THAP12 (ENSBMSG00010006359) #32	GVQW3 (ENSBMSG00010006350)	EMSY (ENSBMSG00010005898) #33	LRRC32 (ENSBMSG00010005727) #34	ENSBMSG00010005705	TSKU (ENSBMSG00010005685) #35	ACER3 (ENSBMSG00010005659) #36	CAPN5 (ENSBMSG00010005617)
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B.h.b.a #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.bb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01010000227694	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00610000086173.a.b	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Sperm whale	MODERN SPECIES	7	PGM2L1 (ENSPCTG00005014991) #9	KCNE3 (ENSPCTG00005014974) #10	ENSPCTG00005014938	LIPT2 (ENSPCTG00005014884) #11	POLD3 (ENSPCTG00005014767)	CHRDL2 (ENSPCTG00005014720) #13	ENSPCTG00005014677	RNF169 (ENSPCTG00005014594) #14	XRRA1 (ENSPCTG00005014504) #15	SPCS2 (ENSPCTG00005014290) #16	NEU3 (ENSPCTG00005014228) #17	ENSPCTG00005014215	SLCO2B1 (ENSPCTG00005013315) #19	TPBGL (ENSPCTG00005013251) #20	ARRB1 (ENSPCTG00005012837) #21	RPS3 (ENSPCTG00005012736) #22	KLHL35 (ENSPCTG00005012608) #24	GDPD5 (ENSPCTG00005012361) #25	SERPINH1 (ENSPCTG00005012284) #26	MAP6 (ENSPCTG00005012178) #27	ENSPCTG00005012145	MOGAT2 (ENSPCTG00005012047) #28	DGAT2 (ENSPCTG00005011874) #29	ENSPCTG00005011854	UVRAG (ENSPCTG00005011757) #30	WNT11 (ENSPCTG00005011701) #31	ENSPCTG00005011685 #32	GVQW3 (ENSPCTG00005011668)	EMSY (ENSPCTG00005011180) #33	LRRC32 (ENSPCTG00005011094) #34	TSKU (ENSPCTG00005011078) #35
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B.h.b.a #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.bb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01010000227694	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00610000086173.a.b	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Dolphin	MODERN SPECIES	2055							LIPT2 (ENSTTRG00000005752) #11	POLD3 (ENSTTRG00000005758)	CHRDL2 (ENSTTRG00000005768) #13	RNF169 (ENSTTRG00000005774) #14	XRRA1 (ENSTTRG00000005818) #15	SPCS2 (ENSTTRG00000005830) #16	NEU3 (ENSTTRG00000005836) #17	SLCO2B1 (ENSTTRG00000005843) #19	ARRB1 (ENSTTRG00000005853) #21	RPS3 (ENSTTRG00000005858) #22	KLHL35 (ENSTTRG00000005860) #24	GDPD5 (ENSTTRG00000005863) #25
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B.h.b.a #10	ENSGT01000000221138	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.bb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01010000227694	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00610000086173.a.b	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	19	PGM2L1 (ENSPSNG00000007242) #9	ENSPSNG00000007219 #10	ENSPSNG00000007198	LIPT2 (ENSPSNG00000007174) #11	POLD3 (ENSPSNG00000007123)	CHRDL2 (ENSPSNG00000007083) #13	RNF169 (ENSPSNG00000007029) #14	XRRA1 (ENSPSNG00000006930) #15	ENSPSNG00000006830 #16	NEU3 (ENSPSNG00000006794) #17	ENSPSNG00000006780	ENSPSNG00000006768	SLCO2B1 (ENSPSNG00000006578) #19	TPBGL (ENSPSNG00000006486) #20	ARRB1 (ENSPSNG00000006320) #21	RPS3 (ENSPSNG00000006180) #22	KLHL35 (ENSPSNG00000006126) #24	GDPD5 (ENSPSNG00000005980) #25	SERPINH1 (ENSPSNG00000005838) #26	MAP6 (ENSPSNG00000005782) #27	MOGAT2 (ENSPSNG00000005741) #28	DGAT2 (ENSPSNG00000005697) #29	LSM4 (ENSPSNG00000005672)	UVRAG (ENSPSNG00000005649) #30	WNT11 (ENSPSNG00000005604) #31	ENSPSNG00000005572 #32	GVQW3 (ENSPSNG00000005560)	EMSY (ENSPSNG00000005336) #33	LRRC32 (ENSPSNG00000005215) #34	ENSPSNG00000005198	ENSPSNG00000005176
Vaquita	MODERN SPECIES	20	AHR (ENSPSNG00000008778)	SNX13 (ENSPSNG00000008877)	HDAC9 (ENSPSNG00000009029)	ENSPSNG00000009173	TWIST1 (ENSPSNG00000009224)	FERD3L (ENSPSNG00000009256)	ENSPSNG00000009323	POLR1F (ENSPSNG00000009354)	TMEM196 (ENSPSNG00000009438)	MACC1 (ENSPSNG00000009595)	ITGB8 (ENSPSNG00000009703)	ENSPSNG00000009751	ENSPSNG00000009781	ENSPSNG00000009873	SP8 (ENSPSNG00000006838)	ENSPSNG00000006887 #22	SP4 (ENSPSNG00000007062)	ENSPSNG00000007110	DNAH11 (ENSPSNG00000007306)	CDCA7L (ENSPSNG00000008676)	RAPGEF5 (ENSPSNG00000008908)	IL6 (ENSPSNG00000009204)	HYCC1 (ENSPSNG00000009328)	KLHL7 (ENSPSNG00000009482)	NUP42 (ENSPSNG00000009532)	GPNMB (ENSPSNG00000009579)	MALSU1 (ENSPSNG00000009639)	IGF2BP3 (ENSPSNG00000009708)	ENSPSNG00000009952	ENSPSNG00000009998	ENSPSNG00000010201
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00390000004396 #7	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B.h.b.a #10	ENSGT01000000221138	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT01010000229934	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01010000227694	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00610000086173.a.b	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	2	PGM2L1 (ENSDLEG00000002819) #9	KCNE3 (ENSDLEG00000002833) #10	ENSDLEG00000002840	LIPT2 (ENSDLEG00000002850) #11	POLD3 (ENSDLEG00000002858)	CHRDL2 (ENSDLEG00000002872) #13	RNF169 (ENSDLEG00000002883) #14	XRRA1 (ENSDLEG00000002903) #15	ENSDLEG00000002925 #15	ENSDLEG00000002932 #16	ENSDLEG00000002942 #16	NEU3 (ENSDLEG00000002947) #17	SLCO2B1 (ENSDLEG00000002954) #19	TPBGL (ENSDLEG00000002963) #20	ARRB1 (ENSDLEG00000002976) #21	RPS3 (ENSDLEG00000003018) #22	KLHL35 (ENSDLEG00000003032) #24	ENSDLEG00000003043	GDPD5 (ENSDLEG00000003060) #25	SERPINH1 (ENSDLEG00000003078) #26	MAP6 (ENSDLEG00000003085) #27	ENSDLEG00000003098	MOGAT2 (ENSDLEG00000003103) #28	DGAT2 (ENSDLEG00000003119) #30	LSM4 (ENSDLEG00000003159)	WNT11 (ENSDLEG00000003165) #31	THAP12 (ENSDLEG00000003173) #32	GVQW3 (ENSDLEG00000003193)	EMSY (ENSDLEG00000003214) #33	LRRC32 (ENSDLEG00000003305) #34	ENSDLEG00000003313
Beluga whale	MODERN SPECIES	72	TSPAN13 (ENSDLEG00000019687)	AGR2 (ENSDLEG00000019695)	AHR (ENSDLEG00000019698)	SNX13 (ENSDLEG00000019708)	HDAC9 (ENSDLEG00000019802)	ENSDLEG00000020794	ENSDLEG00000020800	ENSDLEG00000020805	TWIST1 (ENSDLEG00000020806)	FERD3L (ENSDLEG00000020808)	TWISTNB (ENSDLEG00000020810)	TMEM196 (ENSDLEG00000020812)	ITGB8 (ENSDLEG00000020850)	ENSDLEG00000020866	SP8 (ENSDLEG00000020883)	ENSDLEG00000020889 #22	SP4 (ENSDLEG00000020894)	ENSDLEG00000020902	DNAH11 (ENSDLEG00000021082)	CDCA7L (ENSDLEG00000021687)	RAPGEF5 (ENSDLEG00000021689)	IL6 (ENSDLEG00000021697)	ENSDLEG00000021700	FAM126A (ENSDLEG00000021707)	KLHL7 (ENSDLEG00000021717)	GPNMB (ENSDLEG00000021726)	MALSU1 (ENSDLEG00000021728)	IGF2BP3 (ENSDLEG00000021731)	ENSDLEG00000021737	ENSDLEG00000021739	ENSDLEG00000021741
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	314	PPME1 (ENSMMNG00015020414) #7	PGM2L1 (ENSMMNG00015020391) #9	ENSMMNG00015020370 #10	LIPT2 (ENSMMNG00015020361) #11	ENSMMNG00015020343	CHRDL2 (ENSMMNG00015020311) #13	RNF169 (ENSMMNG00015020277) #14	XRRA1 (ENSMMNG00015020206) #15	ENSMMNG00015020124 #16	NEU3 (ENSMMNG00015020097) #17	SLCO2B1 (ENSMMNG00015019988) #19	TPBGL (ENSMMNG00015019934) #20	ARRB1 (ENSMMNG00015019886) #21	KLHL35 (ENSMMNG00015019832) #24	ENSMMNG00015019811	RPS3 (ENSMMNG00015019776) #22	GDPD5 (ENSMMNG00015019694) #25	SERPINH1 (ENSMMNG00015019659) #26	MAP6 (ENSMMNG00015019635) #27	ENSMMNG00015019612	MOGAT2 (ENSMMNG00015019582) #28	DGAT2 (ENSMMNG00015019561) #29	LSM4 (ENSMMNG00015019548)	UVRAG (ENSMMNG00015019516) #30	WNT11 (ENSMMNG00015019462) #31	ENSMMNG00015019441 #32	GVQW3 (ENSMMNG00015019432)	EMSY (ENSMMNG00015019155) #33	LRRC32 (ENSMMNG00015019035) #34	ENSMMNG00015019014	TSKU (ENSMMNG00015018998) #35
Narwhal	MODERN SPECIES	306	AGR3 (ENSMMNG00015005889)	AHR (ENSMMNG00015005766)	SNX13 (ENSMMNG00015005684)	ENSMMNG00015005627	HDAC9 (ENSMMNG00015005496)	ENSMMNG00015005446	TWIST1 (ENSMMNG00015005433)	FERD3L (ENSMMNG00015005424)	POLR1F (ENSMMNG00015005418)	TMEM196 (ENSMMNG00015014600)	MACC1 (ENSMMNG00015014571)	ITGB8 (ENSMMNG00015014541)	ENSMMNG00015014524	ENSMMNG00015014504	SP8 (ENSMMNG00015014490)	ENSMMNG00015014481 #22	ENSMMNG00015014468	SP4 (ENSMMNG00015014456)	DNAH11 (ENSMMNG00015014124)	CDCA7L (ENSMMNG00015013916)	RAPGEF5 (ENSMMNG00015013835)	IL6 (ENSMMNG00015013785)	ENSMMNG00015013758	HYCC1 (ENSMMNG00015013717)	KLHL7 (ENSMMNG00015013694)	NUP42 (ENSMMNG00015013671)	GPNMB (ENSMMNG00015013654)	MALSU1 (ENSMMNG00015013639)	IGF2BP3 (ENSMMNG00015013611)	ENSMMNG00015013599	ENSMMNG00015013578
Suina	ANCESTRAL SPECIES	5	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01100000263806	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000163113 #18	ENSGT00940000162049	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00440000033232.d	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Chacoan peccary	MODERN SPECIES	32	PPME1 (ENSCWAG00000002394) #7	P4HA3 (ENSCWAG00000002379) #8	PGM2L1 (ENSCWAG00000002367) #9	KCNE3 (ENSCWAG00000002355) #10	LIPT2 (ENSCWAG00000002349) #11	ENSCWAG00000002330	CHRDL2 (ENSCWAG00000002300) #13	RNF169 (ENSCWAG00000002279) #14	XRRA1 (ENSCWAG00000002186) #15	SPCS2 (ENSCWAG00000002150) #16	NEU3 (ENSCWAG00000002122) #17	OR2AT4 (ENSCWAG00000002105) #18	SLCO2B1 (ENSCWAG00000002081) #19	TPBGL (ENSCWAG00000002069) #20	ARRB1 (ENSCWAG00000001998) #21	RPS3 (ENSCWAG00000001939) #22	KLHL35 (ENSCWAG00000001904) #24	GDPD5 (ENSCWAG00000001855) #25	SERPINH1 (ENSCWAG00000001819) #26	ENSCWAG00000001805 #27	MOGAT2 (ENSCWAG00000001781) #28	DGAT2 (ENSCWAG00000001740) #29	UVRAG (ENSCWAG00000001705) #30	WNT11 (ENSCWAG00000001687) #31	THAP12 (ENSCWAG00000001677) #32	GVQW3 (ENSCWAG00000001671)	EMSY (ENSCWAG00000001547) #33	LRRC32 (ENSCWAG00000001490) #34	ENSCWAG00000001431	TSKU (ENSCWAG00000001407) #35	ACER3 (ENSCWAG00000001370) #36
Pig	MODERN SPECIES	17	P4HA3 (ENSSSCG00000014840) #8	PGM2L1 (ENSSSCG00000014838) #9	ENSSSCG00000042110	KCNE3 (ENSSSCG00000029323) #10	LIPT2 (ENSSSCG00000024060) #11	POLD3 (ENSSSCG00000027506)	CHRDL2 (ENSSSCG00000014843) #13	RNF169 (ENSSSCG00000021822) #14	XRRA1 (ENSSSCG00000021702) #15	SPCS2 (ENSSSCG00000014850) #16	NEU3 (ENSSSCG00000021638) #17	OR2AT4 (ENSSSCG00000023029) #18	ENSSSCG00000025925	SLCO2B1 (ENSSSCG00000014851) #19	ARRB1 (ENSSSCG00000014852) #21	RPS3 (ENSSSCG00000014855) #22	KLHL35 (ENSSSCG00000014854) #24	GDPD5 (ENSSSCG00000014853) #25	SERPINH1 (ENSSSCG00000039468) #26	MAP6 (ENSSSCG00000014860) #27	ENSSSCG00000014861 #28	ENSSSCG00000061550 #28	DGAT2 (ENSSSCG00000034102) #29	UVRAG (ENSSSCG00000028979) #30	WNT11 (ENSSSCG00000022347) #31	THAP12 (ENSSSCG00000040639) #32	GVQW3 (ENSSSCG00000062483)	EMSY (ENSSSCG00000014868) #33	LRRC32 (ENSSSCG00000014869) #34	ENSSSCG00000055915	TSKU (ENSSSCG00000014871) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000008610.a.b.a.b #22
Hedgehog	MODERN SPECIES	14112																RPS3 (ENSEEUG00000014531) #22
Common shrew	MODERN SPECIES	3485																RPS3 (ENSSARG00000006979) #22
Atlantogenata	ANCESTRAL SPECIES	35	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT01060000248648	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.c.b #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00940000163174 #37	ENSGT00940000156536
Xenarthra	ANCESTRAL SPECIES	655													ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27
Sloth	MODERN SPECIES	4006																RPS3 (ENSCHOG00000005328) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	4440																ENSDNOG00000014888 #22	MSH6 (ENSDNOG00000034423)	FBXO11 (ENSDNOG00000003057)
Armadillo	MODERN SPECIES	1116													SLCO2B1 (ENSDNOG00000031967) #19	TPBGL (ENSDNOG00000048757) #20	ARRB1 (ENSDNOG00000040731) #21	RPS3 (ENSDNOG00000037189) #22	KLHL35 (ENSDNOG00000019775) #24	ENSDNOG00000032746 #25
Afrotheria	ANCESTRAL SPECIES	41	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.d ##32	ENSGT00530000063516.a.a.c.a ##32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00940000163174 #37
Tenrec	MODERN SPECIES	5024																RPS3 (ENSETEG00000015500) #22
Afrotheria_a	ANCESTRAL SPECIES	71	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049	ENSGT00940000163113 #18	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.d ##32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00940000163174 #37	ENSGT00940000156536
Hyrax	MODERN SPECIES	3665																RPS3 (ENSPCAG00000003033) #22
Elephant	MODERN SPECIES	563	LIPT2 (ENSLAFG00000012749) #11	ENSLAFG00000004098 #12	CHRDL2 (ENSLAFG00000009783) #13	RNF169 (ENSLAFG00000005991) #14	XRRA1 (ENSLAFG00000005994) #15	SPCS2 (ENSLAFG00000005996) #16	NEU3 (ENSLAFG00000016015) #17	ENSLAFG00000031826	OR2AT4 (ENSLAFG00000022125) #18	ENSLAFG00000026465	ENSLAFG00000029633	ENSLAFG00000026542	SLCO2B1 (ENSLAFG00000018182) #19	TPBGL (ENSLAFG00000026034) #20	ARRB1 (ENSLAFG00000022589) #21	RPS3 (ENSLAFG00000004297) #22	KLHL35 (ENSLAFG00000021869) #24	GDPD5 (ENSLAFG00000001164) #25	SERPINH1 (ENSLAFG00000003780) #26	MAP6 (ENSLAFG00000003783) #27	MOGAT2 (ENSLAFG00000011173) #28	DGAT2 (ENSLAFG00000003799) #29	ENSLAFG00000016634 #30	WNT11 (ENSLAFG00000011379) #31	THAP12 (ENSLAFG00000011743) ##32	EMSY (ENSLAFG00000011748) #33	LRRC32 (ENSLAFG00000017456) #34	ENSLAFG00000030179	TSKU (ENSLAFG00000010654) #35	B3GNT6 (ENSLAFG00000002020) #37	CAPN5 (ENSLAFG00000002136)
Marsupialia	ANCESTRAL SPECIES	28	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.yb	ENSGT00940000162049.xb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT01100000263754	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	CHRDL2 (ENSMODG00000007176) #13	RNF169 (ENSMODG00000007163) #14	XRRA1 (ENSMODG00000007151) #15	SPCS2 (ENSMODG00000042403) #16	NEU3 (ENSMODG00000039572) #17	ENSMODG00000036612	ENSMODG00000007071	ENSMODG00000049054	ENSMODG00000029536	ENSMODG00000024027	ENSMODG00000007063	SLCO2B1 (ENSMODG00000007051) #19	ENSMODG00000007031 #20	ARRB1 (ENSMODG00000007021) #21	ENSMODG00000024030	RPS3 (ENSMODG00000006945) #22	KLHL35 (ENSMODG00000006983) #24	ENSMODG00000006862 #25	ENSMODG00000045071 #25	SERPINH1 (ENSMODG00000006814) #26	ENSMODG00000038222	ENSMODG00000043186 #27	ENSMODG00000006756 #28	DGAT2 (ENSMODG00000006739) #29	ENSMODG00000006703	UVRAG (ENSMODG00000006698) #30	ENSMODG00000002815	ENSMODG00000045523	ENSMODG00000002794	ENSMODG00000025585	ENSMODG00000044360
Opossum	MODERN SPECIES		IPMK (ENSMODG00000016132)	ENSMODG00000016135	UBE2D1 (ENSMODG00000013897)	ENSMODG00000016127	ENSMODG00000016125	PHYHIPL (ENSMODG00000016112)	FAM13C (ENSMODG00000016104)	SLC16A9 (ENSMODG00000016083)	SPOCK2 (ENSMODG00000000012)	ASCC1 (ENSMODG00000040209)	ANAPC16 (ENSMODG00000000031)	DDIT4 (ENSMODG00000000035)	DNAJB12 (ENSMODG00000000043)	MICU1 (ENSMODG00000000067)	ENSMODG00000043583	ENSMODG00000000084 #22	MCU (ENSMODG00000000088)	OIT3 (ENSMODG00000000095)	PLA2G12B (ENSMODG00000000102)	P4HA1 (ENSMODG00000000121)	NUDT13 (ENSMODG00000000142)	ENSMODG00000045807	ECD (ENSMODG00000000149)	FAM149B1 (ENSMODG00000000161)	DNAJC9 (ENSMODG00000000167)	MRPS16 (ENSMODG00000000168)	CFAP70 (ENSMODG00000000188)	ENSMODG00000000211	PPP3CB (ENSMODG00000000220)	USP54 (ENSMODG00000000250)	MYOZ1 (ENSMODG00000000272)
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.yb	ENSGT00940000162049.xb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT01100000263754	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Diprotodontia	ANCESTRAL SPECIES	24	ENSGT00940000158967 #8	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.yb	ENSGT00940000162049.xb	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT01100000263754	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.e.a #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Wallaby	MODERN SPECIES	5588																RPS3 (ENSMEUG00000011581) #22	ENSMEUG00000011588 #24
Diprotodontia_a	ANCESTRAL SPECIES	25	ENSGT00940000158353 #9	ENSGT00940000155001.B #10	ENSGT00390000006450 #11	ENSGT00940000163239 #12	ENSGT00940000161241 #13	ENSGT00940000153680.b #14	ENSGT00390000016048 #15	ENSGT00440000038181 #16	ENSGT00950000182944.A #17	ENSGT00940000162049.yb	ENSGT00940000162049.xb.c	ENSGT00940000162049.xb.d	ENSGT01080000257336.a.c.a #19	ENSGT00940000163536 #20	ENSGT00950000182887.C.a.b #21	ENSGT00390000008610.a.b.a.b #22	ENSGT00940000161093 #24	ENSGT00940000159690 #25	ENSGT00940000156163 #26	ENSGT01100000263754	ENSGT00530000063947.C #27	ENSGT01030000234582.e.b #28	ENSGT01030000234582.f.a.b #29	ENSGT00390000012877 #30	ENSGT00940000158413 #31	ENSGT00530000063516.a.a.e.a #32	ENSGT00390000009554 #33	ENSGT00940000162288 #34	ENSGT00940000162702	ENSGT00940000160984 #35	ENSGT00730000110920.a #36
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	577	OLIG3 (ENSVURG00010003481)	ENSVURG00010003453	PERP (ENSVURG00010003438)	ARFGEF3 (ENSVURG00010003304)	SMIM28 (ENSVURG00010003271)	HEBP2 (ENSVURG00010003262)	NHSL1 (ENSVURG00010003237)	CCDC28A (ENSVURG00010003218)	ECT2L (ENSVURG00010003149)	REPS1 (ENSVURG00010003037)	ENSVURG00010003010	HECA (ENSVURG00010002972)	ENSVURG00010002957	TXLNB (ENSVURG00010002930)	CITED2 (ENSVURG00010002923)	ENSVURG00010002890 #22	ENSVURG00010002865	NMBR (ENSVURG00010002830)	GJE1 (ENSVURG00010002824)	VTA1 (ENSVURG00010002812)	ADGRG6 (ENSVURG00010002740)	HIVEP2 (ENSVURG00010002680)	AIG1 (ENSVURG00010002661)	ADAT2 (ENSVURG00010002626)	PEX3 (ENSVURG00010002609)	FUCA2 (ENSVURG00010002596)	PHACTR2 (ENSVURG00010002552)	LTV1 (ENSVURG00010002495)	ENSVURG00010002486	PLAGL1 (ENSVURG00010002478)	ENSVURG00010002464
Common wonbat	MODERN SPECIES	1029	KCNN2 (ENSVURG00010006397)	TRIM36 (ENSVURG00010006391)	PGGT1B (ENSVURG00010006384)	CCDC112 (ENSVURG00010006372)	FEM1C (ENSVURG00010006359)	PRRC1 (ENSVURG00010006350)	MEGF10 (ENSVURG00010006296)	ENSVURG00010006278	ENSVURG00010006265	LMNB1 (ENSVURG00010006260)	PHAX (ENSVURG00010006250)	ALDH7A1 (ENSVURG00010006228)	GRAMD2B (ENSVURG00010006203)	ENSVURG00010006190	ZNF608 (ENSVURG00010006152)	ENSVURG00010006125 #22	ENSVURG00010006119	GADD45G (ENSVURG00010006111)	MAN2A1 (ENSVURG00010006070)	ENSVURG00010006041	FER (ENSVURG00010006015)	ENSVURG00010005997	FBXL17 (ENSVURG00010005921)	EFNA5 (ENSVURG00010005872)	ENSVURG00010005823	NUDT12 (ENSVURG00010005772)	ENSVURG00010005760	MACIR (ENSVURG00010005753)	PPIP5K2 (ENSVURG00010005612)	GIN1 (ENSVURG00010005588)	PAM (ENSVURG00010005526)
Common wonbat	MODERN SPECIES	342	P4HA3 (ENSVURG00010017249) #8	PGM2L1 (ENSVURG00010017230) #9	KCNE3 (ENSVURG00010017220) #10	LIPT2 (ENSVURG00010017202) #11	ENSVURG00010017183	CHRDL2 (ENSVURG00010017166) #13	ENSVURG00010017157 #14	XRRA1 (ENSVURG00010017136) #15	NEU3 (ENSVURG00010017132) #17	ENSVURG00010017126	ENSVURG00010017123	ENSVURG00010017115	SLCO2B1 (ENSVURG00010017093) #19	TPBGL (ENSVURG00010017080) #20	ARRB1 (ENSVURG00010017049) #21	ENSVURG00010017023 #22	ENSVURG00010017014 #24	GDPD5 (ENSVURG00010017005) #25	SERPINH1 (ENSVURG00010016989) #26	ENSVURG00010016983	ENSVURG00010016973 #27	MOGAT2 (ENSVURG00010016965) #28	DGAT2 (ENSVURG00010016956) #29	UVRAG (ENSVURG00010016946) #30	WNT11 (ENSVURG00010016934) #31	ENSVURG00010016929 #32	ENSVURG00010016926 #32	EMSY (ENSVURG00010016923) #33	LRRC32 (ENSVURG00010016917) #34	ENSVURG00010016875	ENSVURG00010016858
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1012	DENND6A (ENSVURG00010003576)	SLMAP (ENSVURG00010003817)	FLNB (ENSVURG00010003968)	ENSVURG00010004062	DNASE1L3 (ENSVURG00010004073)	ABHD6 (ENSVURG00010004113)	RPP14 (ENSVURG00010004122)	ENSVURG00010004130	PXK (ENSVURG00010004160)	PDHB (ENSVURG00010004455)	KCTD6 (ENSVURG00010004491)	ACOX2 (ENSVURG00010004517)	FAM107A (ENSVURG00010004527)	FAM3D (ENSVURG00010004538)	CFAP20DC (ENSVURG00010004687)	ENSVURG00010004775 #22	ENSVURG00010004808	ENSVURG00010004856	PTPRG (ENSVURG00010004969)	ENSVURG00010004992	FEZF2 (ENSVURG00010005007)	ENSVURG00010005137	SYNPR (ENSVURG00010005907)	SNTN (ENSVURG00010005958)	C3orf49 (ENSVURG00010005993)	ENSVURG00010006017	ATXN7 (ENSVURG00010006027)	PSMD6 (ENSVURG00010006048)	PRICKLE2 (ENSVURG00010006134)	ADAMTS9 (ENSVURG00010006187)	MAGI1 (ENSVURG00010006288)
Common wonbat	MODERN SPECIES	1064				ENSVURG00010009264	MDFIC (ENSVURG00010009278)	FOXP2 (ENSVURG00010009307)	PPP1R3A (ENSVURG00010009386)	ENSVURG00010009413	GPR85 (ENSVURG00010009425)	ENSVURG00010009444	BMT2 (ENSVURG00010009456)	TMEM168 (ENSVURG00010009475)	LSMEM1 (ENSVURG00010009495)	IFRD1 (ENSVURG00010009503)	ZNF277 (ENSVURG00010009551)	ENSVURG00010009562 #22	DOCK4 (ENSVURG00010009623)	ENSVURG00010009722	ENSVURG00010009725	LRRN3 (ENSVURG00010009742)	DNAJB9 (ENSVURG00010009752)	THAP5 (ENSVURG00010009760)	ENSVURG00010009772	ENSVURG00010009781	PNPLA8 (ENSVURG00010009810)	NRCAM (ENSVURG00010009866)	LAMB4 (ENSVURG00010010181)	LAMB1 (ENSVURG00010010268)	DLD (ENSVURG00010010309)	SLC26A3 (ENSVURG00010010347)	ENSVURG00010010366
koala	DUPLICATION
koala	DUPLICATION
koala	MODERN SPECIES	3	SLC38A9 (ENSPCIG00000024744)	PLPP1 (ENSPCIG00000024736)	MTREX (ENSPCIG00000024730)	DHX29 (ENSPCIG00000024988)	CCNO (ENSPCIG00000037284)	MCIDAS (ENSPCIG00000025289)	GPX8 (ENSPCIG00000025291)	ENSPCIG00000025290	GZMA (ENSPCIG00000025293)	ENSPCIG00000025294	ENSPCIG00000019866	ENSPCIG00000037382	SNX18 (ENSPCIG00000019867)	HSPB3 (ENSPCIG00000019868)	ARL15 (ENSPCIG00000033856)	ENSPCIG00000022539 #22	NDUFS4 (ENSPCIG00000019873)	FST (ENSPCIG00000009564)	MOCS2 (ENSPCIG00000019875)	ITGA2 (ENSPCIG00000019877)	ENSPCIG00000004871	PELO (ENSPCIG00000004880)	ITGA1 (ENSPCIG00000004822)	ISL1 (ENSPCIG00000022290)	PARP8 (ENSPCIG00000022278)	ENSPCIG00000035468	ENSPCIG00000012453	HCN1 (ENSPCIG00000030065)	ENSPCIG00000019386	MRPS30 (ENSPCIG00000023080)	FGF10 (ENSPCIG00000011758)
koala	MODERN SPECIES	58	ENSPCIG00000018930	ENSPCIG00000036156	ENSPCIG00000018955	ENSPCIG00000030760	ENSPCIG00000018968	ENSPCIG00000033011	ENSPCIG00000018973	ENSPCIG00000018977	ENSPCIG00000018981	ENSPCIG00000018985	ENSPCIG00000018986	ENSPCIG00000034035	ENSPCIG00000018987	ENSPCIG00000018993	ENSPCIG00000018995	ENSPCIG00000018997 #22	ENSPCIG00000036092	ENSPCIG00000019002	ENSPCIG00000019004	ENSPCIG00000037171	ENSPCIG00000019005	FAM83H (ENSPCIG00000019007)	IQANK1 (ENSPCIG00000019010)	SCRIB (ENSPCIG00000019027)	PUF60 (ENSPCIG00000020270)	NRBP2 (ENSPCIG00000020290)	PLEC (ENSPCIG00000014981)	GRINA (ENSPCIG00000009114)	ENSPCIG00000034553	ENSPCIG00000009107	OPLAH (ENSPCIG00000009104)
koala	MODERN SPECIES	35	P4HA3 (ENSPCIG00000021825) #8	PGM2L1 (ENSPCIG00000021827) #9	KCNE3 (ENSPCIG00000021830) #10	LIPT2 (ENSPCIG00000021831) #11	ENSPCIG00000021832 #12	CHRDL2 (ENSPCIG00000021833) #13	ENSPCIG00000021835 #15	SPCS2 (ENSPCIG00000021840) #16	NEU3 (ENSPCIG00000021841) #17	ENSPCIG00000021843	ENSPCIG00000024126	ENSPCIG00000024125	SLCO2B1 (ENSPCIG00000024128) #19	ENSPCIG00000024142 #20	ARRB1 (ENSPCIG00000024137) #21	ENSPCIG00000024144 #22	KLHL35 (ENSPCIG00000024150) #24	ENSPCIG00000024154 #25	ENSPCIG00000031819 #25	SERPINH1 (ENSPCIG00000031151) #26	ENSPCIG00000009765	ENSPCIG00000009766 #27	MOGAT2 (ENSPCIG00000009767) #28	DGAT2 (ENSPCIG00000009770) #29	UVRAG (ENSPCIG00000009778) #30	WNT11 (ENSPCIG00000011373) #31	ENSPCIG00000011379	ENSPCIG00000011376 #32	EMSY (ENSPCIG00000011389) #33	LRRC32 (ENSPCIG00000011397) #34	ENSPCIG00000011400
koala	MODERN SPECIES	106	ENSPCIG00000032559	ENSPCIG00000023300	ENSPCIG00000023299	NR4A2 (ENSPCIG00000015078)	ENSPCIG00000015071	GPD2 (ENSPCIG00000015066)	GALNT5 (ENSPCIG00000003972)	ERMN (ENSPCIG00000003984)	CYTIP (ENSPCIG00000003994)	ACVR1C (ENSPCIG00000004001)	ENSPCIG00000004022	ACVR1 (ENSPCIG00000004031)	UPP2 (ENSPCIG00000028123)	ENSPCIG00000028794	PKP4 (ENSPCIG00000028795)	ENSPCIG00000036633 #22	DAPL1 (ENSPCIG00000037017)	TANC1 (ENSPCIG00000002529)	WDSUB1 (ENSPCIG00000002545)	BAZ2B (ENSPCIG00000003070)	MARCHF7 (ENSPCIG00000018311)	CD302 (ENSPCIG00000018314)	LY75 (ENSPCIG00000018322)	ENSPCIG00000018379	PLA2R1 (ENSPCIG00000018373)	ENSPCIG00000018386	ITGB6 (ENSPCIG00000018382)	RBMS1 (ENSPCIG00000018405)	TANK (ENSPCIG00000030398)	PSMD14 (ENSPCIG00000030393)	TBR1 (ENSPCIG00000030392)
koala	MODERN SPECIES	159	BRI3 (ENSPCIG00000030298)	ENSPCIG00000030294	TECPR1 (ENSPCIG00000030290)	BHLHA15 (ENSPCIG00000030288)	LMTK2 (ENSPCIG00000030286)	ENSPCIG00000030285	ENSPCIG00000030283	ENSPCIG00000030282	ENSPCIG00000030281	PMS2 (ENSPCIG00000030280)	AIMP2 (ENSPCIG00000030279)	EIF2AK1 (ENSPCIG00000030277)	ANKRD61 (ENSPCIG00000030278)	USP42 (ENSPCIG00000030275)	CYTH3 (ENSPCIG00000030271)	ENSPCIG00000030274 #22	ENSPCIG00000030272	RAC1 (ENSPCIG00000030270)	DAGLB (ENSPCIG00000030269)	KDELR2 (ENSPCIG00000030268)	OTOA (ENSPCIG00000030267)	METTL9 (ENSPCIG00000030262)	IGSF6 (ENSPCIG00000030264)	ENSPCIG00000030261	CDR2 (ENSPCIG00000032986)	POLR3E (ENSPCIG00000019767)	EEF2K (ENSPCIG00000019761)	ENSPCIG00000011458	MOSMO (ENSPCIG00000033838)	PDZD9 (ENSPCIG00000008907)	UQCRC2 (ENSPCIG00000008904)