Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412	ENSGT00940000159170 #13	ENSGT00390000003488.a.b.a #14	ENSGT00390000000777 #15	ENSGT00940000158174 #16	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837	ENSGT00940000161482 #26	ENSGT00940000155916 #27	ENSGT00390000002629 #28	ENSGT00390000011943.a.a.a.b #29	ENSGT00530000063553.b.a #30	ENSGT00940000162714	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125	ENSGT00390000012434 #34
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412	ENSGT00940000159170 #13	ENSGT00390000003488.a.b.a #14	ENSGT00390000000777 #15	ENSGT00940000158174 #16	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837	ENSGT00940000161482 #26	ENSGT00940000155916 #27	ENSGT00390000002629 #28	ENSGT00390000011943.a.a.a.b #29	ENSGT00530000063553.b.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125	ENSGT00390000012434 #34	ENSGT00390000007212 #35
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412	ENSGT00940000159170 #13	ENSGT00390000003488.a.b.a #14	ENSGT00390000000777 #15	ENSGT00940000158174 #16	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837	ENSGT00940000161482 #26	ENSGT00940000155916 #27	ENSGT00390000002629 #28	ENSGT00390000011943.a.a.a.b #29	ENSGT00530000063553.b.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00390000012434 #34	ENSGT00390000007212 #35	ENSGT00940000162442 #36
Degu	MODERN SPECIES	91	SH3GL1 (ENSODEG00000015344) #7	CHAF1A (ENSODEG00000015861) #8	UBXN6 (ENSODEG00000015912) #9	ENSODEG00000015495 #10	PLIN4 (ENSODEG00000015715) #11	PLIN5 (ENSODEG00000014740) #12	SEMA6B (ENSODEG00000016032) #13	TNFAIP8L1 (ENSODEG00000020424) #14	MYDGF (ENSODEG00000014093) #15	DPP9 (ENSODEG00000014408) #16	ENSODEG00000014241 #17	FEM1A (ENSODEG00000014717) #18	TICAM1 (ENSODEG00000014706) #19	PLIN3 (ENSODEG00000014389) #20	ARRDC5 (ENSODEG00000014652) #21	UHRF1 (ENSODEG00000015557) #22	KDM4B (ENSODEG00000014383) #23	PTPRS (ENSODEG00000015678) #24	ENSODEG00000015112 #25	SAFB2 (ENSODEG00000014751) #26	SAFB (ENSODEG00000014838) #27	MICOS13 (ENSODEG00000016327) #28	ENSODEG00000017182 #29	LONP1 (ENSODEG00000015069) #30	PRR22 (ENSODEG00000015287) #31	DUS3L (ENSODEG00000015771) #32	NRTN (ENSODEG00000014997) #33	NDUFA11 (ENSODEG00000015123) #34	VMAC (ENSODEG00000014819) #35	CAPS (ENSODEG00000016529) #36	RANBP3 (ENSODEG00000015257) #37
Long-tailed chinchilla	MODERN SPECIES	8																UHRF1 (ENSCLAG00000000039) #22
Guinea pig	MODERN SPECIES	266											DPP9 (ENSCPOG00000023894) #16	FEM1A (ENSCPOG00000002697) #18	TICAM1 (ENSCPOG00000006486) #19	PLIN3 (ENSCPOG00000035732) #20	ARRDC5 (ENSCPOG00000019363) #21	UHRF1 (ENSCPOG00000013885) #22	SAFB2 (ENSCPOG00000011394) #26	SAFB (ENSCPOG00000026322) #27	MICOS13 (ENSCPOG00000019813) #28	RPL36 (ENSCPOG00000022839) #29	LONP1 (ENSCPOG00000022470) #30
Naked mole-rat female	MODERN SPECIES	21	SH3GL1 (ENSHGLG00000005623) #7	CHAF1A (ENSHGLG00000005439) #8	ENSHGLG00000035324	UBXN6 (ENSHGLG00000011971) #9	HDGFL2 (ENSHGLG00000010821) #10	PLIN4 (ENSHGLG00000035695) #11	PLIN5 (ENSHGLG00000009083) #12	LRG1 (ENSHGLG00000008746)	SEMA6B (ENSHGLG00000008078) #13	TNFAIP8L1 (ENSHGLG00000040405) #14	MYDGF (ENSHGLG00000006727) #15	DPP9 (ENSHGLG00000006649) #16	FEM1A (ENSHGLG00000041190) #18	PLIN3 (ENSHGLG00000050405) #20	ARRDC5 (ENSHGLG00000014076) #21	UHRF1 (ENSHGLG00000015739) #22	KDM4B (ENSHGLG00000013802) #23	ENSHGLG00000037010 #25	ENSHGLG00000017464	ENSHGLG00000044379	SAFB2 (ENSHGLG00000017442) #26	ENSHGLG00000015883 #27	MICOS13 (ENSHGLG00000032110) #28	ENSHGLG00000013869 #29	LONP1 (ENSHGLG00000013886) #30	CATSPERD (ENSHGLG00000032633)	PRR22 (ENSHGLG00000043073) #31	DUS3L (ENSHGLG00000013475) #32	NRTN (ENSHGLG00000014364) #33	ENSHGLG00000046495	ENSHGLG00000037047