Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00940000162487 #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00940000162714	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00940000163125 #36
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00940000162487 #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00940000163125 #36	ENSGT00390000012434 #37
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00940000162487 #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00940000163125 #36	ENSGT00390000012434 #37
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00940000162487 #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00940000163125 #36	ENSGT00390000012434 #37
Arctic ground squirrel	MODERN SPECIES	301	SH3GL1 (ENSUPAG00010009851) #7	CHAF1A (ENSUPAG00010009868) #8	UBXN6 (ENSUPAG00010009881) #9	HDGFL2 (ENSUPAG00010009901) #10	ENSUPAG00010009913 #11	PLIN5 (ENSUPAG00010009919) #12	LRG1 (ENSUPAG00010009927) #13	SEMA6B (ENSUPAG00010009930) #14	TNFAIP8L1 (ENSUPAG00010009951) #15	MYDGF (ENSUPAG00010009956) #16	DPP9 (ENSUPAG00010009974) #17	FEM1A (ENSUPAG00010010026) #18	TICAM1 (ENSUPAG00010010031) #19	PLIN3 (ENSUPAG00010010038) #20	ENSUPAG00010010053 #21	UHRF1 (ENSUPAG00010010060) #22	KDM4B (ENSUPAG00010010101) #23	PTPRS (ENSUPAG00010010260) #24	ZNRF4 (ENSUPAG00010023622) #25	ENSUPAG00010023624 #26	SAFB2 (ENSUPAG00010023625) #27	SAFB (ENSUPAG00010023630) #28	MICOS13 (ENSUPAG00010023633) #29	HSD11B1L (ENSUPAG00010023634) #30	RPL36 (ENSUPAG00010023635) #31	LONP1 (ENSUPAG00010023636) #32	PRR22 (ENSUPAG00010023639) #33	DUS3L (ENSUPAG00010023640) #34	NRTN (ENSUPAG00010023641) #35	ENSUPAG00010023642 #36	ENSUPAG00010023643 #37
Squirrel	MODERN SPECIES	188	MPND (ENSSTOG00000008666)	SH3GL1 (ENSSTOG00000008579) #7	CHAF1A (ENSSTOG00000014889) #8	UBXN6 (ENSSTOG00000014906) #9	HDGFL2 (ENSSTOG00000007383) #10	ENSSTOG00000030331	PLIN5 (ENSSTOG00000022250) #12	LRG1 (ENSSTOG00000003007) #13	SEMA6B (ENSSTOG00000021893) #14	TNFAIP8L1 (ENSSTOG00000009863) #15	MYDGF (ENSSTOG00000009868) #16	DPP9 (ENSSTOG00000009879) #17	FEM1A (ENSSTOG00000002965) #18	PLIN3 (ENSSTOG00000027863) #20	ARRDC5 (ENSSTOG00000027289) #21	UHRF1 (ENSSTOG00000025553) #22	KDM4B (ENSSTOG00000022348) #23	PTPRS (ENSSTOG00000028354) #24	ZNRF4 (ENSSTOG00000022733) #25	ENSSTOG00000029515 #26	ENSSTOG00000002758 #27	SAFB (ENSSTOG00000002783) #28	MICOS13 (ENSSTOG00000002814) #29	HSD11B1L (ENSSTOG00000027416) #30	ENSSTOG00000020518 ##31	LONP1 (ENSSTOG00000019884) #32	PRR22 (ENSSTOG00000025571) #33	DUS3L (ENSSTOG00000025017) #34	NRTN (ENSSTOG00000009542) #35	ENSSTOG00000022255 #36	NDUFA11 (ENSSTOG00000028356) #37
Alpin marmot	MODERN SPECIES	88	FSD1 (ENSMMMG00000018181)	STAP2 (ENSMMMG00000018200)	MPND (ENSMMMG00000018208)	SH3GL1 (ENSMMMG00000018246) #7	CHAF1A (ENSMMMG00000018263) #8	UBXN6 (ENSMMMG00000018303) #9	HDGFL2 (ENSMMMG00000018325) #10	ENSMMMG00000018410 #12	LRG1 (ENSMMMG00000018424) #13	ENSMMMG00000018426 #14	MYDGF (ENSMMMG00000018460) #16	DPP9 (ENSMMMG00000018462) #17	FEM1A (ENSMMMG00000018489) #18	PLIN3 (ENSMMMG00000018498) #20	ENSMMMG00000018563 #21	UHRF1 (ENSMMMG00000018568) #22	KDM4B (ENSMMMG00000018611) #23	ENSMMMG00000018660 #24	ENSMMMG00000018676 #24	SAFB2 (ENSMMMG00000018701) #27	SAFB (ENSMMMG00000018807) #28	MICOS13 (ENSMMMG00000018836) #29	HSD11B1L (ENSMMMG00000018842) #30	LONP1 (ENSMMMG00000018859) #32	DUS3L (ENSMMMG00000019016) #34	NRTN (ENSMMMG00000019052) #35	NDUFA11 (ENSMMMG00000019059) #37	VMAC (ENSMMMG00000019061)	CAPS (ENSMMMG00000019062)	RANBP3 (ENSMMMG00000019085)	ENSMMMG00000019101
Eurasian red squirrel	MODERN SPECIES	7	SH3GL1 (ENSSVLG00005018172) #7	CHAF1A (ENSSVLG00005018270) #8	UBXN6 (ENSSVLG00005018509) #9	HDGFL2 (ENSSVLG00005018647) #10	PLIN4 (ENSSVLG00005018704) #11	PLIN5 (ENSSVLG00005018954) #12	LRG1 (ENSSVLG00005019035) #13	SEMA6B (ENSSVLG00005019159) #14	TNFAIP8L1 (ENSSVLG00005019332) #15	MYDGF (ENSSVLG00005019396) #16	DPP9 (ENSSVLG00005019665) #17	FEM1A (ENSSVLG00005019898) #18	TICAM1 (ENSSVLG00005019910) #19	PLIN3 (ENSSVLG00005019930) #20	ARRDC5 (ENSSVLG00005019968) #21	UHRF1 (ENSSVLG00005020117) #22	KDM4B (ENSSVLG00005020468) #23	PTPRS (ENSSVLG00005020607) #24	ENSSVLG00005020738 #25	ENSSVLG00005020769 #26	SAFB2 (ENSSVLG00005020804) #27	SAFB (ENSSVLG00005020852) #28	MICOS13 (ENSSVLG00005020922) #29	HSD11B1L (ENSSVLG00005020980) #30	ENSSVLG00005021082 ##31	LONP1 (ENSSVLG00005021189) #32	PRR22 (ENSSVLG00005021755) #33	DUS3L (ENSSVLG00005021792) #34	NRTN (ENSSVLG00005021968) #35	ENSSVLG00005021990 #36	NDUFA11 (ENSSVLG00005022032) #37
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00940000162714	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00940000163125 #36	ENSGT00390000012434 #37
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00940000163125 #36	ENSGT00390000012434 #37	ENSGT00390000007212
Guinea pig	MODERN SPECIES	266											DPP9 (ENSCPOG00000023894) #17	FEM1A (ENSCPOG00000002697) #18	TICAM1 (ENSCPOG00000006486) #19	PLIN3 (ENSCPOG00000035732) #20	ARRDC5 (ENSCPOG00000019363) #21	UHRF1 (ENSCPOG00000013885) #22	SAFB2 (ENSCPOG00000011394) #27	SAFB (ENSCPOG00000026322) #28	MICOS13 (ENSCPOG00000019813) #29	RPL36 (ENSCPOG00000022839) #31	LONP1 (ENSCPOG00000022470) #32
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000154737.c #7	ENSGT00440000034888 #8	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #10	ENSGT00950000182920.b.a.a.c.a.b.b #11	ENSGT00950000182920.b.a.a.c.b #12	ENSGT00940000162412 #13	ENSGT00940000159170 #14	ENSGT00390000003488.a.b.a #15	ENSGT00390000000777 #16	ENSGT00940000158174 #17	ENSGT00940000161210 #18	ENSGT00940000162411 #19	ENSGT00950000182920.b.a.a.c.a.b.a #20	ENSGT00510000049183 #21	ENSGT00390000008296.a #22	ENSGT00940000159248 #23	ENSGT00940000153617.A.b #24	ENSGT00940000163061 #25	ENSGT01010000222837 #26	ENSGT00940000161482 #27	ENSGT00940000155916 #28	ENSGT00390000002629 #29	ENSGT00390000011943.a.a.a.b #31	ENSGT00530000063553.b.a #32	ENSGT00390000016128 #33	ENSGT00550000075134 #34	ENSGT00950000182993.A.a #35	ENSGT00390000012434 #37	ENSGT00390000007212	ENSGT00940000162442
Long-tailed chinchilla	MODERN SPECIES	8																UHRF1 (ENSCLAG00000000039) #22
Degu	MODERN SPECIES	91	SH3GL1 (ENSODEG00000015344) #7	CHAF1A (ENSODEG00000015861) #8	UBXN6 (ENSODEG00000015912) #9	ENSODEG00000015495 #10	PLIN4 (ENSODEG00000015715) #11	PLIN5 (ENSODEG00000014740) #12	SEMA6B (ENSODEG00000016032) #14	TNFAIP8L1 (ENSODEG00000020424) #15	MYDGF (ENSODEG00000014093) #16	DPP9 (ENSODEG00000014408) #17	ENSODEG00000014241	FEM1A (ENSODEG00000014717) #18	TICAM1 (ENSODEG00000014706) #19	PLIN3 (ENSODEG00000014389) #20	ARRDC5 (ENSODEG00000014652) #21	UHRF1 (ENSODEG00000015557) #22	KDM4B (ENSODEG00000014383) #23	PTPRS (ENSODEG00000015678) #24	ENSODEG00000015112 #25	SAFB2 (ENSODEG00000014751) #27	SAFB (ENSODEG00000014838) #28	MICOS13 (ENSODEG00000016327) #29	ENSODEG00000017182 #31	LONP1 (ENSODEG00000015069) #32	PRR22 (ENSODEG00000015287) #33	DUS3L (ENSODEG00000015771) #34	NRTN (ENSODEG00000014997) #35	NDUFA11 (ENSODEG00000015123) #37	VMAC (ENSODEG00000014819)	CAPS (ENSODEG00000016529)	RANBP3 (ENSODEG00000015257)
Naked mole-rat female	MODERN SPECIES	21	SH3GL1 (ENSHGLG00000005623) #7	CHAF1A (ENSHGLG00000005439) #8	ENSHGLG00000035324	UBXN6 (ENSHGLG00000011971) #9	HDGFL2 (ENSHGLG00000010821) #10	PLIN4 (ENSHGLG00000035695) #11	PLIN5 (ENSHGLG00000009083) #12	LRG1 (ENSHGLG00000008746) #13	SEMA6B (ENSHGLG00000008078) #14	TNFAIP8L1 (ENSHGLG00000040405) #15	MYDGF (ENSHGLG00000006727) #16	DPP9 (ENSHGLG00000006649) #17	FEM1A (ENSHGLG00000041190) #18	PLIN3 (ENSHGLG00000050405) #20	ARRDC5 (ENSHGLG00000014076) #21	UHRF1 (ENSHGLG00000015739) #22	KDM4B (ENSHGLG00000013802) #23	ENSHGLG00000037010 #25	ENSHGLG00000017464 #26	ENSHGLG00000044379	SAFB2 (ENSHGLG00000017442) #27	ENSHGLG00000015883 #28	MICOS13 (ENSHGLG00000032110) #29	ENSHGLG00000013869 #31	LONP1 (ENSHGLG00000013886) #32	CATSPERD (ENSHGLG00000032633)	PRR22 (ENSHGLG00000043073) #33	DUS3L (ENSHGLG00000013475) #34	NRTN (ENSHGLG00000014364) #35	ENSHGLG00000046495	ENSHGLG00000037047