Sarcopterygii ANCESTRAL SPECIES 274 ENSGT00940000155431.b ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT01100000263475 ENSGT00980000198488 ENSGT00940000159023 #17 ENSGT00940000160668 #29 ENSGT00390000008815 #31 ENSGT00390000012691 #32 ENSGT00390000007075 #34 Tetrapoda ANCESTRAL SPECIES 167 ENSGT00940000155431.b ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00390000010512 #35 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b #32 ENSGT00390000008815 #31 ENSGT00940000159023 #17 Amniota ANCESTRAL SPECIES 74 ENSGT00940000159023 #17 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00940000155371 ENSGT00940000160997 ENSGT00950000183127.b ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.a ##32 ENSGT00390000007075 #34 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000010512 #35 Mammalia ANCESTRAL SPECIES 89 ENSGT00940000154723 ENSGT00940000161847 ENSGT00950000183127.b ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00980000198488.n ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Theria ANCESTRAL SPECIES 4 ENSGT00940000160798 ENSGT00920000149187 ENSGT00940000162382 ENSGT00940000155779.a.b ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00980000198488.n ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 ENSGT00920000150736 Eutheria ANCESTRAL SPECIES 9 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000161847 ENSGT00940000155371 ENSGT00940000154993 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000161821 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Primates ANCESTRAL SPECIES 5 ENSGT00530000064839 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000163287 ENSGT00530000064839 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Simiiformes ANCESTRAL SPECIES 5 ENSGT00530000064839 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Catarrhini ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a ENSGT00940000162892.a.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cercopithecinae DUPLICATION Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b ENSGT00940000154993.m.a.a.a ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b ENSGT00940000154993.m.a.a.a ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00910000147736 Cercopithecinae_b ANCESTRAL SPECIES 18 ENSGT00530000064866 ENSGT00940000153251.b.a #10 ENSGT00390000015391 #11 ENSGT00940000155046.t ##12 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a ENSGT00940000162353.h #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n ##24 ENSGT00940000162498.m #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Olive baboon MODERN SPECIES 16 CDSN (ENSPANG00000047914) #7 PSORS1C2 (ENSPANG00000024487) #8 ENSPANG00000049186 #9 CCHCR1 (ENSPANG00000017010) #10 TCF19 (ENSPANG00000024035) #11 ENSPANG00000007627 #12 ENSPANG00000044498 #13 HLA-DOB (ENSPANG00000016388) #14 TAP2 (ENSPANG00000015103) #15 PSMB8 (ENSPANG00000016588) #16 TAP1 (ENSPANG00000024178) #17 PSMB9 (ENSPANG00000033974) #18 HLA-DMB (ENSPANG00000019593) #19 HLA-DMA (ENSPANG00000026492) #20 ENSPANG00000035618 #21 BRD2 (ENSPANG00000019626) #22 HLA-DOA (ENSPANG00000031879) #23 HLA-DPA1 (ENSPANG00000018967) #24 HLA-DPB1 (ENSPANG00000005764) #25 COL11A2 (ENSPANG00000009194) #26 RXRB (ENSPANG00000018527) #27 SLC39A7 (ENSPANG00000023633) #28 HSD17B8 (ENSPANG00000023634) #29 RING1 (ENSPANG00000023635) #30 VPS52 (ENSPANG00000026491) #31 RPS18 (ENSPANG00000029306) #32 B3GALT4 (ENSPANG00000040674) #33 WDR46 (ENSPANG00000009193) #34 PFDN6 (ENSPANG00000025458) #35 RGL2 (ENSPANG00000023572) #36 TAPBP (ENSPANG00000022348) #37 Cercopithecinae_d ANCESTRAL SPECIES 197 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a ENSGT00940000162353.h #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n ##24 ENSGT00940000162390 #25 Drill MODERN SPECIES 1605 HLA-DOB (ENSMLEG00000044332) #14 TAP2 (ENSMLEG00000040111) #15 PSMB8 (ENSMLEG00000028732) #16 TAP1 (ENSMLEG00000042023) #17 PSMB9 (ENSMLEG00000009919) #18 ENSMLEG00000033307 HLA-DMB (ENSMLEG00000032921) #19 HLA-DMA (ENSMLEG00000039758) #20 ENSMLEG00000035779 #21 ENSMLEG00000042296 #22 HLA-DOA (ENSMLEG00000037836) #23 ENSMLEG00000035946 ##24 Sooty mangabey MODERN SPECIES 451 HLA-DQA1 (ENSCATG00000012156) HLA-DQB1 (ENSCATG00000030073) ENSCATG00000036138 #14 TAP2 (ENSCATG00000038838) #15 PSMB8 (ENSCATG00000024878) #16 TAP1 (ENSCATG00000033980) #17 PSMB9 (ENSCATG00000041856) #18 ENSCATG00000037243 HLA-DMB (ENSCATG00000024024) #19 HLA-DMA (ENSCATG00000030669) #20 ENSCATG00000037729 #21 ENSCATG00000034965 #22 HLA-DOA (ENSCATG00000035917) #23 ENSCATG00000024393 ##24 HLA-DPB1 (ENSCATG00000038170) #25 Macaca ANCESTRAL SPECIES 9 ENSGT00530000064839 ENSGT00940000160997 ENSGT00940000154993.m.a.a.b.b ENSGT00940000154993.m.b.a.b ENSGT00940000154993.m.a.a.a ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.b ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00910000147736 Pig-tailed macaque MODERN SPECIES 528 ENSMNEG00000020869 ENSMNEG00000018617 ENSMNEG00000044119 HLA-DQA1 (ENSMNEG00000038603) HLA-DQB1 (ENSMNEG00000027969) HLA-DOB (ENSMNEG00000043598) #14 TAP2 (ENSMNEG00000041413) #15 PSMB8 (ENSMNEG00000044942) #16 TAP1 (ENSMNEG00000041518) #17 PSMB9 (ENSMNEG00000038721) #18 ENSMNEG00000036723 ENSMNEG00000035658 HLA-DMB (ENSMNEG00000044507) #19 HLA-DMA (ENSMNEG00000032904) #20 ENSMNEG00000039758 #21 BRD2 (ENSMNEG00000030743) #22 HLA-DOA (ENSMNEG00000008508) #23 HLA-DPA1 (ENSMNEG00000040889) #24 HLA-DPB1 (ENSMNEG00000029725) #25 ENSMNEG00000010287 #25 COL11A2 (ENSMNEG00000022236) #26 RXRB (ENSMNEG00000034252) #27 SLC39A7 (ENSMNEG00000034647) #28 HSD17B8 (ENSMNEG00000036244) #29 RING1 (ENSMNEG00000042339) #30 VPS52 (ENSMNEG00000038741) #31 ENSMNEG00000045500 ##32 WDR46 (ENSMNEG00000034609) #34 PFDN6 (ENSMNEG00000030272) #35 RGL2 (ENSMNEG00000039053) #36 ENSMNEG00000013214 Macaca_a ANCESTRAL SPECIES 9 ENSGT00890000139566 ENSGT00940000160293 ENSGT00390000002471 ENSGT00940000163287 ENSGT00950000183123.h.b ENSGT00530000064839 ENSGT00940000160997 ENSGT00940000154993.m.a.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160668 #29 ENSGT00940000160076 #28 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.b ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Crab-eating macaque MODERN SPECIES 14 ENSMFAG00000033054 ENSMFAG00000049929 ENSMFAG00000033140 HLA-DRA (ENSMFAG00000032157) ENSMFAG00000058962 HLA-DRB5 (ENSMFAG00000000676) ENSMFAG00000054107 HLA-DQA1 (ENSMFAG00000002949) HLA-DOB (ENSMFAG00000003652) #14 TAP2 (ENSMFAG00000037139) #15 TAP1 (ENSMFAG00000041369) #17 PSMB9 (ENSMFAG00000038128) #18 HLA-DMB (ENSMFAG00000004018) #19 HLA-DMA (ENSMFAG00000042109) #20 ENSMFAG00000060572 #21 BRD2 (ENSMFAG00000037520) #22 HLA-DOA (ENSMFAG00000058905) #23 RXRB (ENSMFAG00000003583) #27 HSD17B8 (ENSMFAG00000037332) #29 SLC39A7 (ENSMFAG00000038848) #28 RING1 (ENSMFAG00000002610) #30 COL11A2 (ENSMFAG00000017491) #26 RPS18 (ENSMFAG00000032199) #32 B3GALT4 (ENSMFAG00000041942) #33 WDR46 (ENSMFAG00000000475) #34 PFDN6 (ENSMFAG00000041216) #35 RGL2 (ENSMFAG00000039597) #36 TAPBP (ENSMFAG00000000942) #37 ZBTB22 (ENSMFAG00000011344) DAXX (ENSMFAG00000038728) ENSMFAG00000058856 Rhesus MODERN SPECIES 14 RNF5 (ENSMMUG00000018438) AGER (ENSMMUG00000018442) PBX2 (ENSMMUG00000018456) GPSM3 (ENSMMUG00000018459) NOTCH4 (ENSMMUG00000018461) ENSMMUG00000029402 TSBP1 (ENSMMUG00000018425) MAMU-DRA (ENSMMUG00000039082) MAMU-DRB1 (ENSMMUG00000029799) ENSMMUG00000054826 MAMU-DOB (ENSMMUG00000011293) #15 PSMB8 (ENSMMUG00000011301) #17 PSMB9 (ENSMMUG00000011304) #18 ENSMMUG00000063291 MAMU-DMB (ENSMMUG00000022626) #19 BRD2 (ENSMMUG00000023138) #22 MAMU-DOA (ENSMMUG00000015734) #23 ENSMMUG00000041095 ENSMMUG00000019371 #24 COL11A2 (ENSMMUG00000003850) #26 RXRB (ENSMMUG00000003858) #27 HSD17B8 (ENSMMUG00000003861) #29 SLC39A7 (ENSMMUG00000003859) #28 RING1 (ENSMMUG00000003863) #30 ENSMMUG00000003867 ##32 VPS52 (ENSMMUG00000003864) #31 B3GALT4 (ENSMMUG00000064507) #33 WDR46 (ENSMMUG00000003869) #34 PFDN6 (ENSMMUG00000003871) #35 RGL2 (ENSMMUG00000003872) #36 TAPBP (ENSMMUG00000003875) #37 Vervet Monkey MODERN SPECIES 8 AGER (ENSCSAG00000009312) PBX2 (ENSCSAG00000009322) GPSM3 (ENSCSAG00000009326) NOTCH4 (ENSCSAG00000009351) HLA-DRA (ENSCSAG00000009368) ENSCSAG00000009375 HLA-DRB1 (ENSCSAG00000009383) HLA-DQA1 (ENSCSAG00000009389) HLA-DQB1 (ENSCSAG00000009394) HLA-DOB (ENSCSAG00000009402) #14 PSMB8 (ENSCSAG00000009409) #16 TAP1 (ENSCSAG00000009417) #17 PSMB9 (ENSCSAG00000009427) #18 HLA-DMB (ENSCSAG00000009430) #19 HLA-DMA (ENSCSAG00000009436) #20 BRD2 (ENSCSAG00000009445) #22 HLA-DOA (ENSCSAG00000009452) #23 ENSCSAG00000009455 #24 ENSCSAG00000009461 #25 COL11A2 (ENSCSAG00000009488) #26 RXRB (ENSCSAG00000009510) #27 SLC39A7 (ENSCSAG00000009519) #28 HSD17B8 (ENSCSAG00000009530) #29 RING1 (ENSCSAG00000009538) #30 VPS52 (ENSCSAG00000009546) #31 B3GALT4 (ENSCSAG00000019308) #33 WDR46 (ENSCSAG00000009552) #34 PFDN6 (ENSCSAG00000009556) #35 RGL2 (ENSCSAG00000009562) #36 TAPBP (ENSCSAG00000009568) #37 ZBTB22 (ENSCSAG00000019307) Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a ##22 Cercopithecinae_d DUPLICATION Cercopithecinae_d ANCESTRAL SPECIES 68 ENSGT00390000004799 ENSGT00390000018900 ENSGT00940000153165.a.b.a ENSGT00940000164696 ENSGT00940000164691.a.b ENSGT00940000164793 ENSGT00940000154251.A.b.a.b.a ENSGT00950000183206.b.c.a.b.a.a ENSGT00940000161967 ENSGT00940000162415 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000158134.A ENSGT00940000162666 ENSGT00940000162246 ENSGT01090000259995.b.b.b ENSGT00940000153385.b.a.b.qc.a.a ##22 ENSGT01090000259995.b.b.a.b.o ENSGT01090000259995.b.b.a.a.b.o.a.b ENSGT01090000259995.b.b.a.a.b.p.a Drill MODERN SPECIES 279 TRIM58 (ENSMLEG00000030196) OR2AJ1 (ENSMLEG00000005755) ENSMLEG00000031562 ##22 ENSMLEG00000011380 ENSMLEG00000037918 ENSMLEG00000027254 Sooty mangabey MODERN SPECIES 301 ENSCATG00000030246 ZNF124 (ENSCATG00000035310) ENSCATG00000038074 ENSCATG00000005868 ZNF496 (ENSCATG00000031929) NLRP3 (ENSCATG00000029371) OR2B11 (ENSCATG00000043410) GCSAML (ENSCATG00000030752) OR13G1 (ENSCATG00000043354) TRIM58 (ENSCATG00000038759) ENSCATG00000030481 ENSCATG00000039502 ##22 ENSCATG00000034652 ENSCATG00000017262 ENSCATG00000015507 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a.b ##22 Sooty mangabey MODERN SPECIES 333 SMTNL1 (ENSCATG00000009203) TIMM10 (ENSCATG00000030369) SLC43A1 (ENSCATG00000036597) RTN4RL2 (ENSCATG00000029746) SLC43A3 (ENSCATG00000031268) PRG2 (ENSCATG00000039658) PRG3 (ENSCATG00000011827) P2RX3 (ENSCATG00000028693) SSRP1 (ENSCATG00000041377) TNKS1BP1 (ENSCATG00000037546) APLNR (ENSCATG00000019437) LRRC55 (ENSCATG00000010960) ENSCATG00000013388 OR9G4 (ENSCATG00000019474) ENSCATG00000019867 ENSCATG00000031014 ##22 OR5M9 (ENSCATG00000020470) OR8J1 (ENSCATG00000014575) OR8K1 (ENSCATG00000018484) ENSCATG00000029525 ENSCATG00000018722 OR5I1 (ENSCATG00000016816) OR4S2 (ENSCATG00000018258) ENSCATG00000039191 OR4A8 (ENSCATG00000000891) Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc ##22 Macaca ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc ##22 Macaca_a ANCESTRAL SPECIES 1 ENSGT00940000157246 ENSGT01030000234542.b.b.a.a.a.b.u ENSGT01060000248581.A.b.l ENSGT00940000164421.c ENSGT01100000263561.C.d.a.a ENSGT01100000263561.C.d.a.b.a ENSGT00940000164421.d ENSGT01060000248581.A.b.k ENSGT00940000154646.C.n.a ENSGT00940000161507 ENSGT00940000158718 ENSGT00940000161423 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000153385.b.a.b.pc ##22 ENSGT00940000162790.a ENSGT00940000162086 ENSGT00940000160234 ENSGT00940000158035 ENSGT01030000234635.a.a.a.b ENSGT00940000162852.a ENSGT00940000162117 ENSGT00390000003207.a ENSGT00940000159972 ENSGT00940000162084 ENSGT00940000153523.j ENSGT00950000183216.d ENSGT00940000153523.i.b ENSGT00940000162597 ENSGT00940000163161 Crab-eating macaque MODERN SPECIES 10 RAB8A (ENSMFAG00000035674) ENSMFAG00000042469 ENSMFAG00000018623 CYP4F11 (ENSMFAG00000039188) OR10H5 (ENSMFAG00000054868) ENSMFAG00000054713 CYP4F57 (ENSMFAG00000045394) ENSMFAG00000052137 ENSMFAG00000053879 CYP4F22 (ENSMFAG00000043198) PGLYRP2 (ENSMFAG00000024296) WIZ (ENSMFAG00000039361) ENSMFAG00000051652 AKAP8L (ENSMFAG00000045237) AKAP8 (ENSMFAG00000042432) ENSMFAG00000030806 ##22 EPHX3 (ENSMFAG00000001020) ILVBL (ENSMFAG00000030909) SYDE1 (ENSMFAG00000037133) OR1I1 (ENSMFAG00000049100) CASP14 (ENSMFAG00000045231) CCDC105 (ENSMFAG00000039156) SLC1A6 (ENSMFAG00000003076) OR7C2 (ENSMFAG00000034243) ENSMFAG00000057232 ENSMFAG00000047405 ENSMFAG00000058125 ZNF333 (ENSMFAG00000035483) ADGRE2 (ENSMFAG00000038126) CLEC17A (ENSMFAG00000043558) NDUFB7 (ENSMFAG00000043529) Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 177 ENSGT00940000154993.m.a.a ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.nc #22 ENSGT00940000162112 #23 Golden snub-nosed monkey MODERN SPECIES 1416 TAP2 (ENSRROG00000033497) #15 PSMB8 (ENSRROG00000019326) #16 TAP1 (ENSRROG00000021353) #17 PSMB9 (ENSRROG00000005028) #18 ENSRROG00000012955 HLA-DMB (ENSRROG00000039771) #19 HLA-DMA (ENSRROG00000037828) #20 ENSRROG00000034857 #21 ENSRROG00000012557 #22 HLA-DOA (ENSRROG00000000054) #23 Black snub-nosed monkey MODERN SPECIES 1396 HLA-DQA1 (ENSRBIG00000031838) ENSRBIG00000031872 HLA-DOB (ENSRBIG00000039119) #14 TAP2 (ENSRBIG00000042752) #15 PSMB8 (ENSRBIG00000032621) #16 TAP1 (ENSRBIG00000038729) #17 PSMB9 (ENSRBIG00000042419) #18 ENSRBIG00000031206 HLA-DMB (ENSRBIG00000031730) #19 HLA-DMA (ENSRBIG00000027897) #20 ENSRBIG00000033102 #21 ENSRBIG00000044329 #22 HLA-DOA (ENSRBIG00000041291) #23 Rhinopithecus ANCESTRAL SPECIES 229 ENSGT01010000222336.a.a.a.ob.a.a.o ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b ENSGT00390000000083.a ENSGT00390000013207 ENSGT00940000153385.b.a.b.oc #22 ENSGT00940000156005 ENSGT00940000156891 ENSGT00940000158751 ENSGT00730000111019 ENSGT00390000016097 ENSGT00390000009546.a ENSGT00910000147388 ENSGT00860000135749 ENSGT00940000159153 ENSGT00940000157159 ENSGT00940000155944 ENSGT00940000153222.a.b.b.b.b.k.b ENSGT00940000157417 ENSGT00940000158243 ENSGT00940000161472 Black snub-nosed monkey MODERN SPECIES 713 ENSRBIG00000023969 ENSRBIG00000031681 RIOX1 (ENSRBIG00000017859) HEATR4 (ENSRBIG00000041847) ENSRBIG00000015372 #22 NUMB (ENSRBIG00000043156) PAPLN (ENSRBIG00000033248) PSEN1 (ENSRBIG00000019293) RBM25 (ENSRBIG00000039904) ZFYVE1 (ENSRBIG00000036107) DCAF4 (ENSRBIG00000041818) ENSRBIG00000040543 ENSRBIG00000038609 DPF3 (ENSRBIG00000021314) RGS6 (ENSRBIG00000038422) SIPA1L1 (ENSRBIG00000013622) ENSRBIG00000033864 PCNX1 (ENSRBIG00000027567) MAP3K9 (ENSRBIG00000031048) TTC9 (ENSRBIG00000041695) Golden snub-nosed monkey MODERN SPECIES 797 ENSRROG00000036776 ENSRROG00000039724 RIOX1 (ENSRROG00000010218) HEATR4 (ENSRROG00000040469) ENSRROG00000035725 #22 NUMB (ENSRROG00000039499) PAPLN (ENSRROG00000032324) PSEN1 (ENSRROG00000023023) RBM25 (ENSRROG00000035556) ENSRROG00000028901 ZFYVE1 (ENSRROG00000037742) DCAF4 (ENSRROG00000035960) ENSRROG00000044529 ENSRROG00000045287 DPF3 (ENSRROG00000039384) RGS6 (ENSRROG00000040751) Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a ENSGT00940000162892.a.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Hominidae ANCESTRAL SPECIES 5 ENSGT00940000160997 ENSGT00940000154993.m.a.a ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a ENSGT00940000162892.a.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ##32 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000154993.m.a.b ENSGT00940000154993.m.a.a ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a ENSGT00940000162892.a.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ##32 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Gorilla MODERN SPECIES 19 BTNL2 (ENSGGOG00000009855) HLA-DRA (ENSGGOG00000009861) HLA-DRB5 (ENSGGOG00000037929) ENSGGOG00000000700 HLA-DQA1 (ENSGGOG00000013538) HLA-DQB1 (ENSGGOG00000004252) ENSGGOG00000037744 HLA-DQB2 (ENSGGOG00000014413) HLA-DOB (ENSGGOG00000043194) #14 TAP2 (ENSGGOG00000010941) #15 PSMB8 (ENSGGOG00000010953) #16 TAP1 (ENSGGOG00000010958) #17 PSMB9 (ENSGGOG00000010965) #18 HLA-DMB (ENSGGOG00000022404) #19 ENSGGOG00000005835 #20 BRD2 (ENSGGOG00000043461) #22 ENSGGOG00000005838 #21 HLA-DOA (ENSGGOG00000010653) #23 HLA-DPA1 (ENSGGOG00000013625) #24 HLA-DPB1 (ENSGGOG00000013630) #25 COL11A2 (ENSGGOG00000009799) #26 RXRB (ENSGGOG00000009823) #27 SLC39A7 (ENSGGOG00000009830) #28 HSD17B8 (ENSGGOG00000009838) #29 RING1 (ENSGGOG00000009842) #30 VPS52 (ENSGGOG00000006565) #31 RPS18 (ENSGGOG00000006571) ##32 WDR46 (ENSGGOG00000006578) #34 PFDN6 (ENSGGOG00000006583) #35 RGL2 (ENSGGOG00000006585) #36 TAPBP (ENSGGOG00000006593) #37 Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000154993.m.a.b ENSGT00940000154993.m.a.a ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a ENSGT00940000162892.a.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ##32 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Pan ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a ENSGT00940000162892.a.b ENSGT00940000154723.b.n ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Chimpanzee MODERN SPECIES 19 PATR-DRA (ENSPTRG00000018016) PATR-DRB5 (ENSPTRG00000023735) ENSPTRG00000051243 PATR-DQB1 (ENSPTRG00000018001) HLA-DQA1 (ENSPTRG00000018017) HLA-DQB1 (ENSPTRG00000018018) HLA-DQA2 (ENSPTRG00000034186) HLA-DQB2 (ENSPTRG00000023404) PATR-DOB (ENSPTRG00000018020) #14 TAP2 (ENSPTRG00000018021) #15 PSMB8 (ENSPTRG00000018022) #16 TAP1 (ENSPTRG00000018023) #17 PSMB9 (ENSPTRG00000018024) #18 PATR-DMB (ENSPTRG00000018025) #19 ENSPTRG00000018026 #20 BRD2 (ENSPTRG00000042676) #22 ENSPTRG00000018027 #21 HLA-DOA (ENSPTRG00000018028) #23 HLA-DPA1 (ENSPTRG00000018029) #24 HLA-DPB1 (ENSPTRG00000018030) #25 COL11A2 (ENSPTRG00000018033) #26 RXRB (ENSPTRG00000018034) #27 SLC39A7 (ENSPTRG00000018035) #28 HSD17B8 (ENSPTRG00000018036) #29 RING1 (ENSPTRG00000018037) #30 VPS52 (ENSPTRG00000018038) #31 RPS18 (ENSPTRG00000018039) ##32 WDR46 (ENSPTRG00000018040) #34 PFDN6 (ENSPTRG00000018041) #35 RGL2 (ENSPTRG00000018042) #36 TAPBP (ENSPTRG00000018043) #37 Bonobo MODERN SPECIES 19 ENSPPAG00000036652 ENSPPAG00000039594 ENSPPAG00000019881 HLA-DQB1 (ENSPPAG00000041275) HLA-DQA2 (ENSPPAG00000038014) HLA-DQB2 (ENSPPAG00000041341) HLA-DOB (ENSPPAG00000027428) #14 TAP2 (ENSPPAG00000033938) #15 PSMB8 (ENSPPAG00000042377) #16 TAP1 (ENSPPAG00000029436) #17 PSMB9 (ENSPPAG00000038623) #18 ENSPPAG00000033020 HLA-DMB (ENSPPAG00000037856) #19 HLA-DMA (ENSPPAG00000041639) #20 ENSPPAG00000027710 #21 BRD2 (ENSPPAG00000016843) #22 HLA-DOA (ENSPPAG00000036361) #23 HLA-DPA1 (ENSPPAG00000031863) #24 HLA-DPB1 (ENSPPAG00000041449) #25 COL11A2 (ENSPPAG00000013099) #26 RXRB (ENSPPAG00000038590) #27 SLC39A7 (ENSPPAG00000028225) #28 HSD17B8 (ENSPPAG00000032286) #29 RING1 (ENSPPAG00000001290) #30 VPS52 (ENSPPAG00000039628) #31 RPS18 (ENSPPAG00000037432) ##32 B3GALT4 (ENSPPAG00000040442) #33 WDR46 (ENSPPAG00000029606) #34 PFDN6 (ENSPPAG00000026096) #35 RGL2 (ENSPPAG00000030717) #36 TAPBP (ENSPPAG00000024524) #37 Human MODERN SPECIES 18 HLA-DRB5 (ENSG00000198502) HLA-DRB1 (ENSG00000196126) HLA-DQA1 (ENSG00000196735) HLA-DQB1 (ENSG00000179344) HLA-DQA2 (ENSG00000237541) HLA-DQB2 (ENSG00000232629) HLA-DOB (ENSG00000241106) #14 ENSG00000250264 TAP2 (ENSG00000204267) #15 PSMB8 (ENSG00000204264) #16 PSMB9 (ENSG00000240065) #18 TAP1 (ENSG00000168394) #17 HLA-DMB (ENSG00000242574) #19 ENSG00000248993 HLA-DMA (ENSG00000204257) #20 BRD2 (ENSG00000204256) #22 HLA-DOA (ENSG00000204252) #23 HLA-DPA1 (ENSG00000231389) #24 HLA-DPB1 (ENSG00000223865) #25 COL11A2 (ENSG00000204248) #26 RXRB (ENSG00000204231) #27 SLC39A7 (ENSG00000112473) #28 HSD17B8 (ENSG00000204228) #29 RING1 (ENSG00000204227) #30 VPS52 (ENSG00000223501) #31 RPS18 (ENSG00000231500) #32 B3GALT4 (ENSG00000235863) #33 WDR46 (ENSG00000227057) #34 PFDN6 (ENSG00000204220) #35 RGL2 (ENSG00000237441) #36 TAPBP (ENSG00000231925) #37 Orangutan MODERN SPECIES 19 TSBP1 (ENSPPYG00000016489) BTNL2 (ENSPPYG00000017215) HLA-DRA (ENSPPYG00000017234) HLA-DRB1 (ENSPPYG00000016490) ENSPPYG00000017216 HLA-DQA2 (ENSPPYG00000017219) HLA-DQB2 (ENSPPYG00000017220) HLA-DOB (ENSPPYG00000017221) #14 TAP2 (ENSPPYG00000017222) #15 PSMB8 (ENSPPYG00000017223) #16 TAP1 (ENSPPYG00000017224) #17 PSMB9 (ENSPPYG00000017225) #18 HLA-DMB (ENSPPYG00000017226) #19 ENSPPYG00000017227 #20 ENSPPYG00000031820 #21 BRD2 (ENSPPYG00000017228) #22 HLA-DOA (ENSPPYG00000016495) #23 ENSPPYG00000029571 #25 HLA-DPA1 (ENSPPYG00000017229) #24 COL11A2 (ENSPPYG00000017238) #26 RXRB (ENSPPYG00000017239) #27 SLC39A7 (ENSPPYG00000017240) #28 HSD17B8 (ENSPPYG00000017241) #29 RING1 (ENSPPYG00000017242) #30 VPS52 (ENSPPYG00000017243) #31 ENSPPYG00000025953 ##32 B3GALT4 (ENSPPYG00000017244) #33 WDR46 (ENSPPYG00000017245) #34 PFDN6 (ENSPPYG00000038269) #35 RGL2 (ENSPPYG00000017247) #36 TAPBP (ENSPPYG00000017248) #37 Gibbon MODERN SPECIES 10 HLA-DRA (ENSNLEG00000006686) ENSNLEG00000032832 HLA-DQA1 (ENSNLEG00000032515) HLA-DQB1 (ENSNLEG00000006693) HLA-DQA2 (ENSNLEG00000027015) HLA-DQB2 (ENSNLEG00000006713) HLA-DOB (ENSNLEG00000027543) #14 TAP2 (ENSNLEG00000006714) #15 PSMB8 (ENSNLEG00000006733) #16 TAP1 (ENSNLEG00000006738) #17 PSMB9 (ENSNLEG00000006757) #18 ENSNLEG00000032895 HLA-DMB (ENSNLEG00000006770) #19 HLA-DMA (ENSNLEG00000006775) #20 ENSNLEG00000032110 #21 BRD2 (ENSNLEG00000006782) #22 ENSNLEG00000031675 #23 HLA-DPA1 (ENSNLEG00000034417) #24 HLA-DPB1 (ENSNLEG00000006801) #25 ENSNLEG00000030023 #26 RXRB (ENSNLEG00000006809) #27 SLC39A7 (ENSNLEG00000006815) #28 HSD17B8 (ENSNLEG00000006824) #29 RING1 (ENSNLEG00000006830) #30 VPS52 (ENSNLEG00000006832) #31 RPS18 (ENSNLEG00000006840) ##32 B3GALT4 (ENSNLEG00000006841) #33 ENSNLEG00000006842 #34 PFDN6 (ENSNLEG00000034338) #35 RGL2 (ENSNLEG00000006847) #36 ENSNLEG00000006852 #37 Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES 2 ENSGT00940000154723.b.k ENSGT00940000154993.n ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.b #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cebidae ANCESTRAL SPECIES 5 ENSGT00940000154993.n.a ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.b #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cebidae_a ANCESTRAL SPECIES 25 ENSGT00940000154993.n.a.b ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.b #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Capuchin MODERN SPECIES 24 HLA-DRA (ENSCCAG00000027271) ENSCCAG00000033580 ENSCCAG00000024284 HLA-DRB1 (ENSCCAG00000025004) HLA-DQA2 (ENSCCAG00000023549) ENSCCAG00000025088 ENSCCAG00000023824 ENSCCAG00000028168 HLA-DOB (ENSCCAG00000034021) #14 TAP2 (ENSCCAG00000035497) #15 PSMB8 (ENSCCAG00000026335) #16 TAP1 (ENSCCAG00000024218) #17 PSMB9 (ENSCCAG00000036808) #18 HLA-DMB (ENSCCAG00000030904) #19 HLA-DMA (ENSCCAG00000031122) #20 ENSCCAG00000016930 #22 HLA-DOA (ENSCCAG00000024211) #23 HLA-DPA1 (ENSCCAG00000035048) #24 HLA-DPB1 (ENSCCAG00000036491) #25 COL11A2 (ENSCCAG00000021086) #26 RXRB (ENSCCAG00000015878) #27 SLC39A7 (ENSCCAG00000021481) #28 HSD17B8 (ENSCCAG00000034063) #29 RING1 (ENSCCAG00000020672) #30 VPS52 (ENSCCAG00000029806) #31 RPS18 (ENSCCAG00000023639) #32 WDR46 (ENSCCAG00000029352) #34 PFDN6 (ENSCCAG00000027108) #35 RGL2 (ENSCCAG00000036457) #36 TAPBP (ENSCCAG00000030579) #37 ZBTB22 (ENSCCAG00000019414) Bolivian squirrel monkey MODERN SPECIES 49 DEFB110 (ENSSBOG00000019583) DEFB112 (ENSSBOG00000031354) TFAP2D (ENSSBOG00000033191) TFAP2B (ENSSBOG00000021734) ENSSBOG00000033280 PKHD1 (ENSSBOG00000026830) IL17A (ENSSBOG00000031117) IL17F (ENSSBOG00000022387) MCM3 (ENSSBOG00000019946) PAQR8 (ENSSBOG00000008561) EFHC1 (ENSSBOG00000023512) TRAM2 (ENSSBOG00000033153) HLA-DMB (ENSSBOG00000028499) #19 HLA-DMA (ENSSBOG00000020585) #20 ENSSBOG00000034712 #21 ENSSBOG00000033070 #22 HLA-DOA (ENSSBOG00000022957) #23 HLA-DPA1 (ENSSBOG00000026139) #24 HLA-DPB1 (ENSSBOG00000023374) #25 COL11A2 (ENSSBOG00000030814) #26 RXRB (ENSSBOG00000028234) #27 SLC39A7 (ENSSBOG00000027575) #28 HSD17B8 (ENSSBOG00000033905) #29 ENSSBOG00000021715 #30 VPS52 (ENSSBOG00000034931) #31 ENSSBOG00000034369 ##32 WDR46 (ENSSBOG00000032568) #34 PFDN6 (ENSSBOG00000034801) #35 RGL2 (ENSSBOG00000031644) #36 TAPBP (ENSSBOG00000031122) #37 ZBTB22 (ENSSBOG00000018285) Marmoset MODERN SPECIES 16 ENSCJAG00000072632 ENSCJAG00000042232 ENSCJAG00000044447 ENSCJAG00000046350 ENSCJAG00000082318 ENSCJAG00000073641 ENSCJAG00000043141 ENSCJAG00000072040 ENSCJAG00000021548 ENSCJAG00000045515 HLA-DOB (ENSCJAG00000035217) #14 TAP2 (ENSCJAG00000021550) #15 TAP1 (ENSCJAG00000021552) #17 PSMB9 (ENSCJAG00000021553) #18 HLA-DMA (ENSCJAG00000021558) #20 ENSCJAG00000021566 #22 HLA-DOA (ENSCJAG00000021571) #23 HLA-DPA1 (ENSCJAG00000057301) #24 HLA-DPB1 (ENSCJAG00000021575) #25 COL11A2 (ENSCJAG00000021577) #26 RXRB (ENSCJAG00000021619) #27 SLC39A7 (ENSCJAG00000021622) #28 ENSCJAG00000021632 #29 RING1 (ENSCJAG00000081691) #30 VPS52 (ENSCJAG00000021644) #31 ENSCJAG00000021650 #32 B3GALT4 (ENSCJAG00000043225) #33 WDR46 (ENSCJAG00000021659) #34 PFDN6 (ENSCJAG00000021665) #35 RGL2 (ENSCJAG00000021668) #36 TAPBP (ENSCJAG00000021675) #37 Mas night monkey MODERN SPECIES 1006 ENSANAG00000025439 ENSANAG00000023444 HLA-DQA2 (ENSANAG00000023973) HLA-DQB2 (ENSANAG00000025105) TAP2 (ENSANAG00000023266) #15 PSMB8 (ENSANAG00000023214) #16 TAP1 (ENSANAG00000025374) #17 PSMB9 (ENSANAG00000018195) #18 ENSANAG00000029686 HLA-DMB (ENSANAG00000031322) #19 HLA-DMA (ENSANAG00000024515) #20 ENSANAG00000022510 #21 BRD2 (ENSANAG00000025054) #22 HLA-DOA (ENSANAG00000023738) #23 ENSANAG00000020251 ENSANAG00000021916 HLA-DPA1 (ENSANAG00000025586) #24 Platyrrhini ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.mc #22 Cebidae ANCESTRAL SPECIES 1 ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338 ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e ENSGT00940000156746 ENSGT00940000155661 Cebidae_a ANCESTRAL SPECIES ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338.i ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e.a ENSGT00940000156746 ENSGT00940000155661 Capuchin MODERN SPECIES 163 TTC22 (ENSCCAG00000033419) LEXM (ENSCCAG00000027952) ENSCCAG00000028192 TMEM61 (ENSCCAG00000024822) BSND (ENSCCAG00000021350) ENSCCAG00000030255 PCSK9 (ENSCCAG00000036131) USP24 (ENSCCAG00000027655) ENSCCAG00000022168 PLPP3 (ENSCCAG00000001330) PRKAA2 (ENSCCAG00000035336) FYB2 (ENSCCAG00000027589) C8A (ENSCCAG00000024662) C8B (ENSCCAG00000031384) DAB1 (ENSCCAG00000024787) ENSCCAG00000022246 #22 OMA1 (ENSCCAG00000022811) TACSTD2 (ENSCCAG00000032228) MYSM1 (ENSCCAG00000029058) FGGY (ENSCCAG00000033989) ENSCCAG00000025106 HOOK1 (ENSCCAG00000006471) CYP2J2 (ENSCCAG00000027549) C1orf87 (ENSCCAG00000027605) Bolivian squirrel monkey MODERN SPECIES 45 TTC4 (ENSSBOG00000032224) TTC22 (ENSSBOG00000026280) LEXM (ENSSBOG00000006931) DHCR24 (ENSSBOG00000025550) TMEM61 (ENSSBOG00000013875) BSND (ENSSBOG00000035713) PCSK9 (ENSSBOG00000029957) USP24 (ENSSBOG00000022906) ENSSBOG00000031773 PLPP3 (ENSSBOG00000021254) PRKAA2 (ENSSBOG00000036202) FYB2 (ENSSBOG00000024468) C8A (ENSSBOG00000023783) C8B (ENSSBOG00000034357) DAB1 (ENSSBOG00000030885) ENSSBOG00000024749 #22 OMA1 (ENSSBOG00000023199) TACSTD2 (ENSSBOG00000024148) MYSM1 (ENSSBOG00000031552) ENSSBOG00000029734 FGGY (ENSSBOG00000031213) HOOK1 (ENSSBOG00000032069) CYP2J2 (ENSSBOG00000033096) C1orf87 (ENSSBOG00000033425) ENSSBOG00000024205 NFIA (ENSSBOG00000030190) ENSSBOG00000028260 ENSSBOG00000028010 PATJ (ENSSBOG00000022857) KANK4 (ENSSBOG00000020644) USP1 (ENSSBOG00000020735) Marmoset MODERN SPECIES 19 TTC4 (ENSCJAG00000015611) TTC22 (ENSCJAG00000015639) LEXM (ENSCJAG00000015646) DHCR24 (ENSCJAG00000015653) TMEM61 (ENSCJAG00000015669) BSND (ENSCJAG00000042101) PCSK9 (ENSCJAG00000015682) USP24 (ENSCJAG00000015739) PLPP3 (ENSCJAG00000015880) ENSCJAG00000054878 PRKAA2 (ENSCJAG00000015889) FYB2 (ENSCJAG00000015907) C8A (ENSCJAG00000015926) C8B (ENSCJAG00000015932) DAB1 (ENSCJAG00000015941) ENSCJAG00000022997 #22 ENSCJAG00000070548 ENSCJAG00000084546 OMA1 (ENSCJAG00000016000) ENSCJAG00000074487 TACSTD2 (ENSCJAG00000016017) MYSM1 (ENSCJAG00000016020) FGGY (ENSCJAG00000016043) ENSCJAG00000022957 HOOK1 (ENSCJAG00000016077) CYP2J2 (ENSCJAG00000016130) C1orf87 (ENSCJAG00000016137) ENSCJAG00000053189 ENSCJAG00000022998 NFIA (ENSCJAG00000016165) ENSCJAG00000078946 Tarsier DUPLICATION Tarsier MODERN SPECIES 1195 BRD2 (ENSTSYG00000004390) #22 HLA-DOA (ENSTSYG00000005170) #23 HLA-DPA1 (ENSTSYG00000013384) #24 HLA-DPB1 (ENSTSYG00000009782) #25 COL11A2 (ENSTSYG00000027190) #26 RXRB (ENSTSYG00000033111) #27 SLC39A7 (ENSTSYG00000026087) #28 HSD17B8 (ENSTSYG00000029416) #29 RING1 (ENSTSYG00000036469) #30 VPS52 (ENSTSYG00000012493) #31 RPS18 (ENSTSYG00000012508) #32 WDR46 (ENSTSYG00000028390) #34 ENSTSYG00000037267 #35 ENSTSYG00000006290 TAPBP (ENSTSYG00000036113) #37 DAXX (ENSTSYG00000029920) Tarsier MODERN SPECIES 1411 CRHR2 (ENSTSYG00000001674) GARS (ENSTSYG00000008538) ENSTSYG00000025595 #22 GGCT (ENSTSYG00000001156) NOD1 (ENSTSYG00000001155) Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00940000162450 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000161821 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Lemuriformes_a ANCESTRAL SPECIES 76 ENSGT00940000163287 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 872 HLA-DQB1 (ENSPCOG00000014494) HLA-DOB (ENSPCOG00000022286) #14 TAP2 (ENSPCOG00000014799) #15 PSMB8 (ENSPCOG00000028091) #16 TAP1 (ENSPCOG00000019389) #17 PSMB9 (ENSPCOG00000017686) #18 HLA-DMB (ENSPCOG00000018934) #19 HLA-DMA (ENSPCOG00000022072) #20 ENSPCOG00000016191 #21 ENSPCOG00000018456 #22 ENSPCOG00000018880 HLA-DOA (ENSPCOG00000014372) #23 HLA-DPA1 (ENSPCOG00000015236) #24 Coquerels sifaka MODERN SPECIES 611 CPZ (ENSPCOG00000018885) TRMT44 (ENSPCOG00000028809) ACOX3 (ENSPCOG00000015967) HTRA3 (ENSPCOG00000015549) NANP (ENSPCOG00000022703) ENSPCOG00000014381 NINL (ENSPCOG00000019338) GINS1 (ENSPCOG00000016034) ABHD12 (ENSPCOG00000022073) PYGB (ENSPCOG00000021348) ENTPD6 (ENSPCOG00000022862) VSX1 (ENSPCOG00000013919) ACSS1 (ENSPCOG00000018745) APMAP (ENSPCOG00000023592) CST7 (ENSPCOG00000019725) ENSPCOG00000023905 #22 SYNDIG1 (ENSPCOG00000003880) ENSPCOG00000021349 Greater bamboo lemur MODERN SPECIES 650 ENSPSMG00000007220 ENSPSMG00000007226 HLA-DRA (ENSPSMG00000007272) ENSPSMG00000007912 ENSPSMG00000008349 HLA-DQB1 (ENSPSMG00000008743) HLA-DOB (ENSPSMG00000008851) #14 TAP2 (ENSPSMG00000008940) #15 PSMB8 (ENSPSMG00000009083) #16 TAP1 (ENSPSMG00000009102) #17 PSMB9 (ENSPSMG00000009117) #18 HLA-DMB (ENSPSMG00000009134) #19 HLA-DMA (ENSPSMG00000009171) #20 BRD2 (ENSPSMG00000009223) #22 ENSPSMG00000009252 HLA-DOA (ENSPSMG00000009261) #23 HLA-DPA1 (ENSPSMG00000009402) #24 HLA-DPB1 (ENSPSMG00000009639) #25 ENSPSMG00000009792 #24 Mouse lemur MODERN SPECIES 28 CYP21A2 (ENSMICG00000016652) ENSMICG00000046247 ENSMICG00000016667 ATF6B (ENSMICG00000047519) PRRT1 (ENSMICG00000032288) PPT2 (ENSMICG00000001807) EGFL8 (ENSMICG00000042415) AGPAT1 (ENSMICG00000001813) RNF5 (ENSMICG00000048108) AGER (ENSMICG00000001823) PBX2 (ENSMICG00000001829) GPSM3 (ENSMICG00000026321) NOTCH4 (ENSMICG00000001835) HLA-DMB (ENSMICG00000043729) #19 HLA-DMA (ENSMICG00000010132) #20 BRD2 (ENSMICG00000003693) #22 HLA-DOA (ENSMICG00000047683) #23 HLA-DPA1 (ENSMICG00000003711) #24 HLA-DPB1 (ENSMICG00000030867) #25 ENSMICG00000001373 COL11A2 (ENSMICG00000000879) #26 RXRB (ENSMICG00000000899) #27 SLC39A7 (ENSMICG00000000905) #28 HSD17B8 (ENSMICG00000000908) #29 RING1 (ENSMICG00000030050) #30 VPS52 (ENSMICG00000027900) #31 ENSMICG00000035485 #32 WDR46 (ENSMICG00000000916) #34 PFDN6 (ENSMICG00000000922) #35 RGL2 (ENSMICG00000000926) #36 TAPBP (ENSMICG00000042293) #37 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 220 ENSOGAG00000015917 ENSOGAG00000033148 CYP4F115 (ENSOGAG00000011748) CYP4F113 (ENSOGAG00000007410) ENSOGAG00000028565 CYP4F112 (ENSOGAG00000031204) CYP4F111 (ENSOGAG00000002017) CYP4F3 (ENSOGAG00000032860) CYP4F22 (ENSOGAG00000030936) ENSOGAG00000024112 PGLYRP2 (ENSOGAG00000026199) RASAL3 (ENSOGAG00000033656) WIZ (ENSOGAG00000010952) AKAP8L (ENSOGAG00000010943) AKAP8 (ENSOGAG00000029564) ENSOGAG00000000840 #22 EPHX3 (ENSOGAG00000006687) NOTCH3 (ENSOGAG00000006680) ENSOGAG00000024942 ILVBL (ENSOGAG00000014020) SYDE1 (ENSOGAG00000014015) OR1I1 (ENSOGAG00000003203) CASP14 (ENSOGAG00000024750) CCDC105 (ENSOGAG00000011860) SLC1A6 (ENSOGAG00000029166) ENSOGAG00000033292 OR7C2 (ENSOGAG00000031212) ENSOGAG00000025389 ENSOGAG00000028478 ENSOGAG00000026639 Bushbaby MODERN SPECIES 146 ENSOGAG00000013069 ENSOGAG00000025050 BTNL2 (ENSOGAG00000008396) HLA-DRA (ENSOGAG00000008398) ENSOGAG00000009732 ENSOGAG00000030012 ENSOGAG00000008401 HLA-DQB1 (ENSOGAG00000005662) ENSOGAG00000031343 #15 PSMB8 (ENSOGAG00000013830) #16 TAP1 (ENSOGAG00000013836) #17 PSMB9 (ENSOGAG00000013846) #18 ENSOGAG00000013823 #15 HLA-DMB (ENSOGAG00000032749) #19 HLA-DMA (ENSOGAG00000006029) #20 BRD2 (ENSOGAG00000006473) #22 HLA-DOA (ENSOGAG00000014685) #23 HLA-DPA1 (ENSOGAG00000006476) #24 ENSOGAG00000016138 #25 ENSOGAG00000034269 COL11A2 (ENSOGAG00000025975) #26 RXRB (ENSOGAG00000011689) #27 SLC39A7 (ENSOGAG00000030006) #28 HSD17B8 (ENSOGAG00000006214) #29 RING1 (ENSOGAG00000006220) #30 VPS52 (ENSOGAG00000006222) #31 RPS18 (ENSOGAG00000006225) #32 B3GALT4 (ENSOGAG00000006228) #33 WDR46 (ENSOGAG00000006230) #34 ENSOGAG00000028341 #35 RGL2 (ENSOGAG00000003996) #36 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000161821 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Tree shrew MODERN SPECIES 5170 HLA-DMB (ENSTBEG00000016414) #19 BRD2 (ENSTBEG00000016659) #22 Glires ANCESTRAL SPECIES 5 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b ENSGT00940000161821 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Lagomorpha ANCESTRAL SPECIES 2 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154723.b ENSGT00940000154993 ENSGT00940000161821 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Rabbit MODERN SPECIES 3 ENSOCUG00000021762 ENSOCUG00000006769 ENSOCUG00000025822 HLA-DRA (ENSOCUG00000009103) ENSOCUG00000029731 ENSOCUG00000030453 HLA-DQB1 (ENSOCUG00000002485) ENSOCUG00000002480 HLA-DOB (ENSOCUG00000029437) #14 TAP2 (ENSOCUG00000002489) #15 PSMB8 (ENSOCUG00000002131) #16 TAP1 (ENSOCUG00000002135) #17 ENSOCUG00000002139 #18 HLA-DMB (ENSOCUG00000026567) #19 HLA-DMA (ENSOCUG00000022573) #20 BRD2 (ENSOCUG00000003097) #22 ENSOCUG00000003319 #23 HLA-DPB1 (ENSOCUG00000008721) #25 COL11A2 (ENSOCUG00000016497) #26 RXRB (ENSOCUG00000011590) #27 SLC39A7 (ENSOCUG00000011598) #28 HSD17B8 (ENSOCUG00000020995) #29 VPS52 (ENSOCUG00000010533) #31 ENSOCUG00000010546 ##32 B3GALT4 (ENSOCUG00000010550) #33 ENSOCUG00000010554 #34 PFDN6 (ENSOCUG00000010559) #35 RGL2 (ENSOCUG00000026930) #36 TAPBP (ENSOCUG00000010563) #37 DAXX (ENSOCUG00000010574) SMIM40 (ENSOCUG00000037016) Pika MODERN SPECIES 3165 ENSOPRG00000007415 #19 HLA-DMA (ENSOPRG00000007424) #20 BRD2 (ENSOPRG00000007431) #22 HLA-DOA (ENSOPRG00000007456) #23 ENSOPRG00000007464 #24 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000160997 ENSGT00940000154993.k.b ENSGT00940000155371 ENSGT00940000154993.l ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Cricetidae ANCESTRAL SPECIES 9 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000154993.k.b.b ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 Chinese hamster chok1gshd MODERN SPECIES 303 ENSCGRG00001001955 Btnl1 (ENSCGRG00001017970) Btnl2 (ENSCGRG00001016923) H2-Ea (ENSCGRG00001015369) ENSCGRG00001015049 ENSCGRG00001021279 H2-Aa (ENSCGRG00001020824) H2-Ab1 (ENSCGRG00001020630) H2-Ob (ENSCGRG00001020078) #14 ENSCGRG00001019448 Psmb8 (ENSCGRG00001018009) #16 Tap1 (ENSCGRG00001009114) #17 Psmb9 (ENSCGRG00001007415) #18 ENSCGRG00001001555 #19 H2-DMa (ENSCGRG00001000682) #20 Brd2 (ENSCGRG00001018148) #22 H2-Oa (ENSCGRG00001013616) #23 ENSCGRG00001009189 #24 ENSCGRG00001007476 #25 Col11a2 (ENSCGRG00001016209) #26 Rxrb (ENSCGRG00001000192) #27 Slc39a7 (ENSCGRG00001022298) #28 Hsd17b8 (ENSCGRG00001003834) #29 Ring1 (ENSCGRG00001001992) #30 ENSCGRG00001000484 ENSCGRG00001000045 ENSCGRG00001001839 ENSCGRG00001020054 ENSCGRG00001018024 ENSCGRG00001013282 ENSCGRG00001018149 Golden Hamster MODERN SPECIES 856 Notch4 (ENSMAUG00000015895) ENSMAUG00000009410 ENSMAUG00000015609 Btnl1 (ENSMAUG00000016817) Btnl2 (ENSMAUG00000003530) H2-Eb2 (ENSMAUG00000018151) H2-Aa (ENSMAUG00000003363) H2-Ab1 (ENSMAUG00000020395) H2-Ob (ENSMAUG00000007698) #14 Tap2 (ENSMAUG00000015081) #15 Psmb8 (ENSMAUG00000003396) #16 Tap1 (ENSMAUG00000017718) #17 Psmb9 (ENSMAUG00000007584) #18 ENSMAUG00000008923 #19 H2-DMa (ENSMAUG00000000861) #20 Brd2 (ENSMAUG00000006799) #22 Col11a2 (ENSMAUG00000021348) #26 Rxrb (ENSMAUG00000009043) #27 Slc39a7 (ENSMAUG00000015255) #28 Hsd17b8 (ENSMAUG00000013407) #29 Ring1 (ENSMAUG00000012254) #30 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000154993.l ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Northern American deer mouse MODERN SPECIES 13 Btnl2 (ENSPEMG00000007431) H2-Ea (ENSPEMG00000008261) H2-Eb2 (ENSPEMG00000006456) H2-Eb1 (ENSPEMG00000002889) ENSPEMG00000012679 ENSPEMG00000015401 ENSPEMG00000007095 ENSPEMG00000012719 H2-Ob (ENSPEMG00000001796) #14 Tap2 (ENSPEMG00000010503) #15 Psmb8 (ENSPEMG00000012170) #16 Tap1 (ENSPEMG00000012461) #17 Psmb9 (ENSPEMG00000009609) #18 ENSPEMG00000018040 #19 H2-DMa (ENSPEMG00000013203) #20 Brd2 (ENSPEMG00000018138) #22 H2-Oa (ENSPEMG00000011158) #23 ENSPEMG00000015442 #24 ENSPEMG00000026148 #25 Col11a2 (ENSPEMG00000016918) #26 Rxrb (ENSPEMG00000018454) #27 Slc39a7 (ENSPEMG00000003403) #28 Hsd17b8 (ENSPEMG00000012925) #29 Ring1 (ENSPEMG00000019238) #30 ENSPEMG00000024622 ENSPEMG00000030975 ENSPEMG00000030319 Rps18 (ENSPEMG00000005058) #32 B3galt4 (ENSPEMG00000004762) #33 Wdr46 (ENSPEMG00000019179) #34 Pfdn6 (ENSPEMG00000005228) #35 Prairie vole MODERN SPECIES 352 ENSMOCG00000011431 Btnl1 (ENSMOCG00000018715) Btnl2 (ENSMOCG00000014437) H2-Ea (ENSMOCG00000008786) ENSMOCG00000019721 ENSMOCG00000017941 ENSMOCG00000013355 H2-Ab1 (ENSMOCG00000008439) H2-Ob (ENSMOCG00000008562) #14 Tap2 (ENSMOCG00000022898) #15 Psmb8 (ENSMOCG00000014719) #16 Tap1 (ENSMOCG00000019762) #17 Psmb9 (ENSMOCG00000005369) #18 ENSMOCG00000022309 #19 H2-DMa (ENSMOCG00000002744) #20 Brd2 (ENSMOCG00000016368) #22 H2-Oa (ENSMOCG00000020236) #23 ENSMOCG00000010963 #24 Col11a2 (ENSMOCG00000016852) #26 Rxrb (ENSMOCG00000000374) #27 Slc39a7 (ENSMOCG00000019993) #28 Hsd17b8 (ENSMOCG00000001695) #29 Ring1 (ENSMOCG00000020973) #30 ENSMOCG00000014473 Vps52 (ENSMOCG00000004229) #31 Rps18 (ENSMOCG00000018024) #32 B3galt4 (ENSMOCG00000011979) #33 Wdr46 (ENSMOCG00000014412) #34 Pfdn6 (ENSMOCG00000022424) #35 Rgl2 (ENSMOCG00000022698) #36 Tapbp (ENSMOCG00000010072) #37 Murinae ANCESTRAL SPECIES 18 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mus ANCESTRAL SPECIES 16 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mus_A ANCESTRAL SPECIES 10 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381.h #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mus_B ANCESTRAL SPECIES 9 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381.h #19 ENSGT00940000160381.g #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.`b #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mouse MODERN SPECIES 8 Btnl1 (ENSMUSG00000062638) Btnl2 (ENSMUSG00000024340) H2-Ea (ENSMUSG00000036322) H2-Eb2 (ENSMUSG00000067341) H2-Eb1 (ENSMUSG00000060586) H2-Aa (ENSMUSG00000036594) H2-Ab1 (ENSMUSG00000073421) H2-Ob (ENSMUSG00000041538) #14 Tap2 (ENSMUSG00000024339) #15 Psmb8 (ENSMUSG00000024338) #16 Tap1 (ENSMUSG00000037321) #17 Psmb9 (ENSMUSG00000096727) #18 H2-DMb1 (ENSMUSG00000079547) #19 H2-DMb2 (ENSMUSG00000037548) #19 H2-DMa (ENSMUSG00000037649) #20 Brd2 (ENSMUSG00000024335) #22 H2-Oa (ENSMUSG00000024334) #23 Col11a2 (ENSMUSG00000024330) #26 Rxrb (ENSMUSG00000039656) #27 Slc39a7 (ENSMUSG00000024327) #28 Hsd17b8 (ENSMUSG00000073422) #29 Ring1 (ENSMUSG00000024325) #30 H2-K1 (ENSMUSG00000061232) Vps52 (ENSMUSG00000024319) #31 Rps18 (ENSMUSG00000008668) #32 B3galt4 (ENSMUSG00000067370) #33 Wdr46 (ENSMUSG00000024312) #34 Pfdn6 (ENSMUSG00000024309) #35 Rgl2 (ENSMUSG00000041354) #36 Zbtb22 (ENSMUSG00000051390) Tapbp (ENSMUSG00000024308) #37 Mus_C ANCESTRAL SPECIES 9 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b.b ENSGT00940000155371 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381.h #19 ENSGT00940000160381.g #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.`b #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Steppe mouse MODERN SPECIES 2564 Btnl1 (ENSMSIG00000010748) Btnl2 (ENSMSIG00000010760) H2-Ea (ENSMSIG00000010776) H2-Eb2 (ENSMSIG00000010788) ENSMSIG00000010807 H2-Aa (ENSMSIG00000010823) ENSMSIG00000010843 H2-Ob (ENSMSIG00000010868) #14 Tap2 (ENSMSIG00000010919) #15 ENSMSIG00000010972 Psmb8 (ENSMSIG00000010986) #16 ENSMSIG00000011012 #17 Psmb9 (ENSMSIG00000011042) #18 H2-DMb1 (ENSMSIG00000011055) #19 H2-DMa (ENSMSIG00000011088) #20 Brd2 (ENSMSIG00000011118) #22 H2-Oa (ENSMSIG00000011198) #23 ENSMSIG00000011214 #24 Col11a2 (ENSMSIG00000011347) #26 Rxrb (ENSMSIG00000012091) #27 Slc39a7 (ENSMSIG00000012137) #28 ENSMSIG00000012153 #29 Ring1 (ENSMSIG00000012190) #30 ENSMSIG00000012243 ENSMSIG00000012249 Vps52 (ENSMSIG00000012295) #31 Rps18 (ENSMSIG00000012382) #32 B3galt4 (ENSMSIG00000012406) #33 Wdr46 (ENSMSIG00000012419) #34 Pfdn6 (ENSMSIG00000012469) #35 Rgl2 (ENSMSIG00000012505) #36 spretus MODERN SPECIES 8 Btnl1 (MGP_SPRETEiJ_G0022363) Btnl2 (MGP_SPRETEiJ_G0022362) H2-Eb2 (MGP_SPRETEiJ_G0022361) MGP_SPRETEiJ_G0022360 H2-Aa (MGP_SPRETEiJ_G0022359) H2-Ab1 (MGP_SPRETEiJ_G0022358) H2-Ob (MGP_SPRETEiJ_G0022357) #14 MGP_SPRETEiJ_G0022356 Tap2 (MGP_SPRETEiJ_G0022355) #15 Psmb8 (MGP_SPRETEiJ_G0022354) #16 Tap1 (MGP_SPRETEiJ_G0022353) #17 Psmb9 (MGP_SPRETEiJ_G0022352) #18 H2-DMb2 (MGP_SPRETEiJ_G0022351) #19 MGP_SPRETEiJ_G0022350 #19 H2-DMa (MGP_SPRETEiJ_G0022349) #20 Brd2 (MGP_SPRETEiJ_G0022348) #22 H2-Oa (MGP_SPRETEiJ_G0022347) #23 Col11a2 (MGP_SPRETEiJ_G0022346) #26 Rxrb (MGP_SPRETEiJ_G0022345) #27 Slc39a7 (MGP_SPRETEiJ_G0022344) #28 Hsd17b8 (MGP_SPRETEiJ_G0022343) #29 Ring1 (MGP_SPRETEiJ_G0022342) #30 MGP_SPRETEiJ_G0022340 ##32 B3galt4 (MGP_SPRETEiJ_G0022339) #33 Wdr46 (MGP_SPRETEiJ_G0022338) #34 Pfdn6 (MGP_SPRETEiJ_G0022337) #35 Rgl2 (MGP_SPRETEiJ_G0022336) #36 Zbtb22 (MGP_SPRETEiJ_G0022335) Tapbp (MGP_SPRETEiJ_G0022334) #37 Daxx (MGP_SPRETEiJ_G0022333) Cd320 (MGP_SPRETEiJ_G0022332) Ryukyu mouse MODERN SPECIES 8 Btnl1 (MGP_CAROLIEiJ_G0021457) Btnl2 (MGP_CAROLIEiJ_G0021456) H2-Eb2 (MGP_CAROLIEiJ_G0021455) MGP_CAROLIEiJ_G0021454 H2-Aa (MGP_CAROLIEiJ_G0021453) H2-Ab1 (MGP_CAROLIEiJ_G0021452) H2-Ob (MGP_CAROLIEiJ_G0021451) #14 MGP_CAROLIEiJ_G0021450 Tap2 (MGP_CAROLIEiJ_G0021449) #15 Psmb8 (MGP_CAROLIEiJ_G0021448) #16 Tap1 (MGP_CAROLIEiJ_G0021447) #17 Psmb9 (MGP_CAROLIEiJ_G0021446) #18 MGP_CAROLIEiJ_G0021445 #19 MGP_CAROLIEiJ_G0021444 #19 H2-DMa (MGP_CAROLIEiJ_G0021443) #20 Brd2 (MGP_CAROLIEiJ_G0021442) #22 H2-Oa (MGP_CAROLIEiJ_G0021441) #23 Col11a2 (MGP_CAROLIEiJ_G0021440) #26 Rxrb (MGP_CAROLIEiJ_G0021439) #27 Slc39a7 (MGP_CAROLIEiJ_G0021438) #28 Hsd17b8 (MGP_CAROLIEiJ_G0021437) #29 Ring1 (MGP_CAROLIEiJ_G0021436) #30 MGP_CAROLIEiJ_G0021435 MGP_CAROLIEiJ_G0021434 MGP_CAROLIEiJ_G0021432 MGP_CAROLIEiJ_G0021431 MGP_CAROLIEiJ_G0021430 MGP_CAROLIEiJ_G0021429 Rps18 (MGP_CAROLIEiJ_G0021428) #32 B3galt4 (MGP_CAROLIEiJ_G0021427) #33 Wdr46 (MGP_CAROLIEiJ_G0021426) #34 Shrew mouse MODERN SPECIES 9 MGP_PahariEiJ_G0020455 Tsbp1 (MGP_PahariEiJ_G0020454) Btnl1 (MGP_PahariEiJ_G0020453) Btnl2 (MGP_PahariEiJ_G0020452) H2-Eb2 (MGP_PahariEiJ_G0020451) MGP_PahariEiJ_G0020450 H2-Aa (MGP_PahariEiJ_G0020449) H2-Ab1 (MGP_PahariEiJ_G0020448) H2-Ob (MGP_PahariEiJ_G0020447) #14 MGP_PahariEiJ_G0020446 Tap2 (MGP_PahariEiJ_G0020445) #15 Psmb8 (MGP_PahariEiJ_G0020444) #16 Tap1 (MGP_PahariEiJ_G0020443) #17 Psmb9 (MGP_PahariEiJ_G0020442) #18 H2-DMa (MGP_PahariEiJ_G0020441) #20 Brd2 (MGP_PahariEiJ_G0020440) #22 H2-Oa (MGP_PahariEiJ_G0020439) #23 Col11a2 (MGP_PahariEiJ_G0020438) #26 Rxrb (MGP_PahariEiJ_G0020437) #27 Slc39a7 (MGP_PahariEiJ_G0020436) #28 Hsd17b8 (MGP_PahariEiJ_G0020435) #29 Ring1 (MGP_PahariEiJ_G0020434) #30 MGP_PahariEiJ_G0020433 #32 B3galt4 (MGP_PahariEiJ_G0020432) #33 Wdr46 (MGP_PahariEiJ_G0020431) #34 Pfdn6 (MGP_PahariEiJ_G0020430) #35 Rgl2 (MGP_PahariEiJ_G0020429) #36 Zbtb22 (MGP_PahariEiJ_G0020428) Tapbp (MGP_PahariEiJ_G0020427) #37 Daxx (MGP_PahariEiJ_G0020426) Cd320 (MGP_PahariEiJ_G0020425) Rat MODERN SPECIES 12 Tsbp1 (ENSRNOG00000039398) Btnl3 (ENSRNOG00000039396) Btnl2 (ENSRNOG00000028541) RT1-Da (ENSRNOG00000032844) RT1-Db2 (ENSRNOG00000030431) RT1-Db1 (ENSRNOG00000033215) RT1-Ba (ENSRNOG00000000451) RT1-Bb (ENSRNOG00000032708) RT1-DOb (ENSRNOG00000000454) #14 Tap2 (ENSRNOG00000000455) #15 Psmb8 (ENSRNOG00000000456) #16 Tap1 (ENSRNOG00000000457) #17 Psmb9 (ENSRNOG00000000459) #18 RT1-DMb (ENSRNOG00000049491) #19 RT1-DMa (ENSRNOG00000066773) #20 Brd2 (ENSRNOG00000000461) #22 RT1-DOa (ENSRNOG00000026762) #23 RT1-Ha (ENSRNOG00000045908) #24 RT1-Hb-ps1 (ENSRNOG00000061936) #25 Col11a2 (ENSRNOG00000000463) #26 Rxrb (ENSRNOG00000000464) #27 Slc39a7 (ENSRNOG00000000465) #28 Hsd17b8 (ENSRNOG00000000466) #29 Ring1 (ENSRNOG00000000467) #30 Vps52 (ENSRNOG00000000470) #31 ENSRNOG00000062487 ENSRNOG00000069209 B3galt4 (ENSRNOG00000000471) #33 Wdr46 (ENSRNOG00000031171) #34 Pfdn6 (ENSRNOG00000000473) #35 Rgl2 (ENSRNOG00000000474) #36 Upper Galilee mountains blind mole rat MODERN SPECIES 369 Psmb8 (ENSNGAG00000001376) #16 Tap1 (ENSNGAG00000012692) #17 Psmb9 (ENSNGAG00000022287) #18 ENSNGAG00000015143 #19 H2-DMa (ENSNGAG00000022770) #20 Brd2 (ENSNGAG00000022459) #22 H2-Oa (ENSNGAG00000015259) #23 ENSNGAG00000014641 #25 Lesser Egyptian jerboa MODERN SPECIES 41 H2-Ob (ENSJJAG00000022338) #14 ENSJJAG00000003836 Tap2 (ENSJJAG00000004300) #15 Psmb8 (ENSJJAG00000023598) #16 Tap1 (ENSJJAG00000022861) #17 Psmb9 (ENSJJAG00000022884) #18 ENSJJAG00000004664 #19 H2-DMa (ENSJJAG00000012555) #20 Brd2 (ENSJJAG00000010183) #22 H2-Oa (ENSJJAG00000000542) #23 ENSJJAG00000023713 #25 Col11a2 (ENSJJAG00000010448) #26 Rxrb (ENSJJAG00000004710) #27 Slc39a7 (ENSJJAG00000014121) #28 Hsd17b8 (ENSJJAG00000021794) #29 Ring1 (ENSJJAG00000022246) #30 Vps52 (ENSJJAG00000020884) #31 Rps18 (ENSJJAG00000018899) #32 Wdr46 (ENSJJAG00000021960) #34 Pfdn6 (ENSJJAG00000009874) #35 ENSJJAG00000023644 ENSJJAG00000021860 #36 ENSJJAG00000000854 #37 Daxx (ENSJJAG00000022212) Kangaroo rat MODERN SPECIES 519 Gpsm3 (ENSDORG00000025609) ENSDORG00000009936 ENSDORG00000028297 H2-Ea (ENSDORG00000014782) ENSDORG00000024908 ENSDORG00000029602 ENSDORG00000006991 ENSDORG00000011904 ENSDORG00000008310 #14 Tap2 (ENSDORG00000008311) #15 Psmb8 (ENSDORG00000028592) #16 Tap1 (ENSDORG00000029698) #17 Psmb9 (ENSDORG00000006231) #18 ENSDORG00000005172 #19 ENSDORG00000005173 #20 Brd2 (ENSDORG00000004497) #22 H2-Oa (ENSDORG00000004499) #23 ENSDORG00000004500 #24 ENSDORG00000024606 #25 Col11a2 (ENSDORG00000013815) #26 Rxrb (ENSDORG00000013816) #27 Slc39a7 (ENSDORG00000013818) #28 Hsd17b8 (ENSDORG00000013819) #29 Ring1 (ENSDORG00000013820) #30 Vps52 (ENSDORG00000013822) #31 ENSDORG00000013825 #32 B3galt4 (ENSDORG00000013826) #33 Wdr46 (ENSDORG00000013827) #34 ENSDORG00000013828 #35 Rgl2 (ENSDORG00000013829) #36 Tapbp (ENSDORG00000013835) #37 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000162892 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00940000162450 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00980000198621 ENSGT00940000162450 ENSGT00940000162079 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d.o ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Long-tailed chinchilla MODERN SPECIES 144 ENSCLAG00000011744 ENSCLAG00000015677 BTNL2 (ENSCLAG00000007142) HLA-DRA (ENSCLAG00000009768) ENSCLAG00000013098 ENSCLAG00000016042 ENSCLAG00000009507 HLA-DQB2 (ENSCLAG00000011869) HLA-DOB (ENSCLAG00000011735) #14 TAP2 (ENSCLAG00000012654) #15 PSMB8 (ENSCLAG00000006990) #16 TAP1 (ENSCLAG00000008052) #17 PSMB9 (ENSCLAG00000007918) #18 HLA-DMB (ENSCLAG00000008468) #19 HLA-DMA (ENSCLAG00000014679) #20 BRD2 (ENSCLAG00000009750) #22 HLA-DOA (ENSCLAG00000011531) #23 HLA-DPB1 (ENSCLAG00000013126) #25 HLA-DPA1 (ENSCLAG00000010668) #24 COL11A2 (ENSCLAG00000007783) #26 RXRB (ENSCLAG00000013699) #27 SLC39A7 (ENSCLAG00000014475) #28 HSD17B8 (ENSCLAG00000007885) #29 RING1 (ENSCLAG00000009149) #30 VPS52 (ENSCLAG00000008115) #31 RPS18 (ENSCLAG00000008982) ##32 WDR46 (ENSCLAG00000007512) #34 PFDN6 (ENSCLAG00000010475) #35 RGL2 (ENSCLAG00000009780) #36 TAPBP (ENSCLAG00000010992) #37 DAXX (ENSCLAG00000010016) Degu MODERN SPECIES 46 ENSODEG00000017653 ENSODEG00000017401 ENSODEG00000017414 ENSODEG00000017398 ENSODEG00000017435 ENSODEG00000017402 ENSODEG00000017510 ENSODEG00000017249 HLA-DOB (ENSODEG00000017495) #14 TAP1 (ENSODEG00000017484) #17 PSMB9 (ENSODEG00000017656) #18 TAP2 (ENSODEG00000017797) #15 PSMB8 (ENSODEG00000017662) #16 HLA-DMB (ENSODEG00000017802) #19 ENSODEG00000017381 #20 BRD2 (ENSODEG00000017239) #22 HLA-DOA (ENSODEG00000017569) #23 HLA-DPA1 (ENSODEG00000017716) #24 COL11A2 (ENSODEG00000017513) #26 RXRB (ENSODEG00000017146) #27 SLC39A7 (ENSODEG00000017361) #28 HSD17B8 (ENSODEG00000017486) #29 RING1 (ENSODEG00000017691) #30 VPS52 (ENSODEG00000017744) #31 ENSODEG00000017344 ##32 B3GALT4 (ENSODEG00000017281) #33 WDR46 (ENSODEG00000017342) #34 ENSODEG00000017649 #35 RGL2 (ENSODEG00000017326) #36 TAPBP (ENSODEG00000017301) #37 DAXX (ENSODEG00000017044) Guinea pig MODERN SPECIES 15 ENSCPOG00000023019 BTNL2 (ENSCPOG00000004277) HLA-DRA (ENSCPOG00000012309) ENSCPOG00000036465 ENSCPOG00000003574 ENSCPOG00000040083 ENSCPOG00000014463 HLA-DQB2 (ENSCPOG00000038606) HLA-DOB (ENSCPOG00000033895) #14 TAP2 (ENSCPOG00000038951) #15 PSMB8 (ENSCPOG00000000729) #16 TAP1 (ENSCPOG00000026988) #17 PSMB9 (ENSCPOG00000002121) #18 HLA-DMB (ENSCPOG00000002810) #19 HLA-DMA (ENSCPOG00000015044) #20 BRD2 (ENSCPOG00000002811) #22 HLA-DOA (ENSCPOG00000012562) #23 ENSCPOG00000002427 #24 ENSCPOG00000032859 #25 ENSCPOG00000024142 #25 ENSCPOG00000035477 #24 COL11A2 (ENSCPOG00000020466) #26 RXRB (ENSCPOG00000013936) #27 SLC39A7 (ENSCPOG00000023790) #28 HSD17B8 (ENSCPOG00000013940) #29 RING1 (ENSCPOG00000013943) #30 VPS52 (ENSCPOG00000013947) #31 RPS18 (ENSCPOG00000019675) #32 B3GALT4 (ENSCPOG00000012731) #33 WDR46 (ENSCPOG00000012733) #34 PFDN6 (ENSCPOG00000019520) #35 Naked mole-rat female MODERN SPECIES 4 GPSM3 (ENSHGLG00000012807) HLA-DRA (ENSHGLG00000012243) ENSHGLG00000012074 ENSHGLG00000011873 ENSHGLG00000011613 ENSHGLG00000011398 ENSHGLG00000043086 HLA-DQB2 (ENSHGLG00000038840) HLA-DOB (ENSHGLG00000016652) #14 TAP2 (ENSHGLG00000019356) #15 PSMB8 (ENSHGLG00000017087) #16 TAP1 (ENSHGLG00000017081) #17 PSMB9 (ENSHGLG00000036914) #18 HLA-DMB (ENSHGLG00000017060) #19 HLA-DMA (ENSHGLG00000017048) #20 BRD2 (ENSHGLG00000019334) #22 HLA-DOA (ENSHGLG00000019255) #23 HLA-DPA1 (ENSHGLG00000019266) #24 HLA-DPB1 (ENSHGLG00000019389) #25 COL11A2 (ENSHGLG00000018531) #26 RXRB (ENSHGLG00000018456) #27 SLC39A7 (ENSHGLG00000018434) #28 HSD17B8 (ENSHGLG00000019497) #29 RING1 (ENSHGLG00000019474) #30 VPS52 (ENSHGLG00000017226) #31 B3GALT4 (ENSHGLG00000046221) #33 WDR46 (ENSHGLG00000017190) #34 PFDN6 (ENSHGLG00000017170) #35 RGL2 (ENSHGLG00000017158) #36 TAPBP (ENSHGLG00000017138) #37 ZBTB22 (ENSHGLG00000017146) Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b ENSGT00940000155371 ENSGT00940000154993.k.a ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Eurasian red squirrel MODERN SPECIES 16 HLA-DRA (ENSSVLG00005007588) ENSSVLG00005007546 ENSSVLG00005007511 ENSSVLG00005007482 ENSSVLG00005007455 HLA-DQB2 (ENSSVLG00005007368) ENSSVLG00005007173 ENSSVLG00005006864 HLA-DOB (ENSSVLG00005006746) #14 TAP2 (ENSSVLG00005006696) #15 PSMB8 (ENSSVLG00005006647) #16 TAP1 (ENSSVLG00005006618) #17 PSMB9 (ENSSVLG00005006563) #18 HLA-DMB (ENSSVLG00005006515) #19 HLA-DMA (ENSSVLG00005006465) #20 BRD2 (ENSSVLG00005006374) #22 HLA-DOA (ENSSVLG00005006335) #23 HLA-DPA1 (ENSSVLG00005006304) #24 HLA-DPB1 (ENSSVLG00005006269) #25 COL11A2 (ENSSVLG00005005202) #26 RXRB (ENSSVLG00005004952) #27 SLC39A7 (ENSSVLG00005004925) #28 HSD17B8 (ENSSVLG00005004902) #29 RING1 (ENSSVLG00005004804) #30 ENSSVLG00005004778 VPS52 (ENSSVLG00005004757) #31 RPS18 (ENSSVLG00005004721) #32 B3GALT4 (ENSSVLG00005004704) #33 WDR46 (ENSSVLG00005004694) #34 ENSSVLG00005004670 #35 RGL2 (ENSSVLG00005004647) #36 Marmotini ANCESTRAL SPECIES 18 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.k.b ENSGT00940000154993.k.a ENSGT00940000161821.k ENSGT00940000154723.b ENSGT00940000161821.l.a ENSGT00940000162353.i #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00940000162353.i #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Arctic ground squirrel MODERN SPECIES 25 HLA-DMB (ENSUPAG00010005014) #19 HLA-DMA (ENSUPAG00010005022) #20 BRD2 (ENSUPAG00010005033) #22 HLA-DOA (ENSUPAG00010005068) #23 HLA-DPB1 (ENSUPAG00010005123) #25 HLA-DPA1 (ENSUPAG00010012558) #24 COL11A2 (ENSUPAG00010012591) #26 RXRB (ENSUPAG00010013376) #27 SLC39A7 (ENSUPAG00010013405) #28 HSD17B8 (ENSUPAG00010013412) #29 RING1 (ENSUPAG00010013424) #30 VPS52 (ENSUPAG00010013433) #31 ENSUPAG00010013506 ##32 B3GALT4 (ENSUPAG00010013513) #33 WDR46 (ENSUPAG00010013516) #34 PFDN6 (ENSUPAG00010013562) #35 RGL2 (ENSUPAG00010013583) #36 TAPBP (ENSUPAG00010013596) #37 Squirrel MODERN SPECIES 76 ENSSTOG00000028098 HLA-DOB (ENSSTOG00000003405) #14 ENSSTOG00000030715 TAP2 (ENSSTOG00000003413) #15 PSMB8 (ENSSTOG00000019724) #16 TAP1 (ENSSTOG00000003451) #17 PSMB9 (ENSSTOG00000003475) #18 HLA-DMB (ENSSTOG00000019821) #19 HLA-DMA (ENSSTOG00000009246) #20 BRD2 (ENSSTOG00000010807) #22 HLA-DOA (ENSSTOG00000010820) #23 HLA-DPA1 (ENSSTOG00000003558) #24 HLA-DPB1 (ENSSTOG00000003567) #25 COL11A2 (ENSSTOG00000003578) #26 RXRB (ENSSTOG00000027099) #27 SLC39A7 (ENSSTOG00000014304) #28 HSD17B8 (ENSSTOG00000020853) #29 RING1 (ENSSTOG00000026166) #30 VPS52 (ENSSTOG00000002397) #31 ENSSTOG00000002417 ##32 B3GALT4 (ENSSTOG00000024877) #33 WDR46 (ENSSTOG00000002433) #34 PFDN6 (ENSSTOG00000027428) #35 RGL2 (ENSSTOG00000024728) #36 TAPBP (ENSSTOG00000025004) #37 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 24 ENSMMMG00000023121 RAB8A (ENSMMMG00000023118) TPM4 (ENSMMMG00000022621) ENSMMMG00000022612 ENSMMMG00000022610 ENSMMMG00000022564 ENSMMMG00000022557 CYP4F2 (ENSMMMG00000022533) CYP4F8 (ENSMMMG00000022511) CYP4F22 (ENSMMMG00000022504) PGLYRP2 (ENSMMMG00000022496) RASAL3 (ENSMMMG00000022474) ENSMMMG00000022459 AKAP8L (ENSMMMG00000022438) AKAP8 (ENSMMMG00000022416) ENSMMMG00000022411 #22 ENSMMMG00000022407 EPHX3 (ENSMMMG00000022401) NOTCH3 (ENSMMMG00000022356) ENSMMMG00000022351 ILVBL (ENSMMMG00000022300) SYDE1 (ENSMMMG00000022294) OR1I1 (ENSMMMG00000022293) CASP14 (ENSMMMG00000022289) CCDC105 (ENSMMMG00000022286) SLC1A6 (ENSMMMG00000022279) ENSMMMG00000022278 ENSMMMG00000022277 ENSMMMG00000022259 ENSMMMG00000022258 ENSMMMG00000022253 Alpin marmot MODERN SPECIES 20 ENSMMMG00000018777 ENSMMMG00000018780 ENSMMMG00000018785 ENSMMMG00000018797 ENSMMMG00000018808 ENSMMMG00000020395 ENSMMMG00000024056 ENSMMMG00000024215 HLA-DOB (ENSMMMG00000024217) #14 TAP2 (ENSMMMG00000024218) #15 PSMB8 (ENSMMMG00000024220) #16 TAP1 (ENSMMMG00000024221) #17 PSMB9 (ENSMMMG00000024222) #18 HLA-DMB (ENSMMMG00000024223) #19 HLA-DMA (ENSMMMG00000024224) #20 BRD2 (ENSMMMG00000024225) #22 HLA-DOA (ENSMMMG00000024226) #23 HLA-DPA1 (ENSMMMG00000024227) #24 HLA-DPB1 (ENSMMMG00000024228) #25 COL11A2 (ENSMMMG00000024229) #26 RXRB (ENSMMMG00000024230) #27 SLC39A7 (ENSMMMG00000024231) #28 HSD17B8 (ENSMMMG00000024232) #29 RING1 (ENSMMMG00000024233) #30 VPS52 (ENSMMMG00000024234) #31 ENSMMMG00000024235 ##32 B3GALT4 (ENSMMMG00000024236) #33 WDR46 (ENSMMMG00000024237) #34 PFDN6 (ENSMMMG00000024238) #35 RGL2 (ENSMMMG00000024239) #36 TAPBP (ENSMMMG00000024240) #37 Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000161847 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154993 ENSGT00940000155371.m.a ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Eulipotyphla ANCESTRAL SPECIES 124 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 Common shrew MODERN SPECIES 6707 HLA-DMB (ENSSARG00000006772) #19 HLA-DMA (ENSSARG00000006783) #20 BRD2 (ENSSARG00000006789) #22 Hedgehog MODERN SPECIES 8504 ENSEEUG00000010670 #19 BRD2 (ENSEEUG00000010734) #22 COL11A2 (ENSEEUG00000010805) #26 RXRB (ENSEEUG00000012064) #27 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000161847 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154993 ENSGT00940000155371.m.a ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000154993 ENSGT00940000155371.m.a.b.b ENSGT00940000155371.m.a.a ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Artiodactyla_a ANCESTRAL SPECIES 19 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000155371.m.b ENSGT00940000155371.m.a.b.b ENSGT00940000154993 ENSGT00940000155371.m.a.a ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Camelidae ANCESTRAL SPECIES 13 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371.m.a.b.a ENSGT00940000155371.m.a.a ENSGT00940000161821.d ENSGT00940000154723.b.ib ENSGT00940000155371.m.b ENSGT00940000154723.b.jb ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Alpaca MODERN SPECIES 2774 ENSVPAG00000008046 #19 BRD2 (ENSVPAG00000008048) #22 HLA-DOA (ENSVPAG00000008049) #23 HLA-DPA1 (ENSVPAG00000008050) #24 ENSVPAG00000008051 #25 Arabian camel MODERN SPECIES 12 ENSCDRG00005021434 ENSCDRG00005021439 ENSCDRG00005021448 ENSCDRG00005021452 ENSCDRG00005021455 TAP2 (ENSCDRG00005021460) #15 ENSCDRG00005021466 ENSCDRG00005021469 ENSCDRG00005021472 HLA-DOB (ENSCDRG00005021474) #14 PSMB8 (ENSCDRG00005021475) #16 TAP1 (ENSCDRG00005021477) #17 PSMB9 (ENSCDRG00005021480) #18 HLA-DMB (ENSCDRG00005021484) #19 HLA-DMA (ENSCDRG00005021489) #20 BRD2 (ENSCDRG00005021496) #22 HLA-DOA (ENSCDRG00005021502) #23 HLA-DPA1 (ENSCDRG00005021505) #24 HLA-DPB1 (ENSCDRG00005021506) #25 COL11A2 (ENSCDRG00005021542) #26 RXRB (ENSCDRG00005021632) #27 SLC39A7 (ENSCDRG00005021641) #28 HSD17B8 (ENSCDRG00005021643) #29 RING1 (ENSCDRG00005021646) #30 VPS52 (ENSCDRG00005021653) #31 RPS18 (ENSCDRG00005021659) #32 B3GALT4 (ENSCDRG00005021661) #33 WDR46 (ENSCDRG00005021663) #34 PFDN6 (ENSCDRG00005021673) #35 RGL2 (ENSCDRG00005021678) #36 TAPBP (ENSCDRG00005021686) #37 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000154993 ENSGT00940000155371.m.a.b.b ENSGT00940000161821.c.b ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Pecora ANCESTRAL SPECIES 21 ENSGT00940000155371.m.b ENSGT00940000161821.d ENSGT00940000155371.m.a.b.a ENSGT00940000155371.m.a.b.b ENSGT00940000154993 ENSGT00940000155371.m.a.a ENSGT00940000161821.c.b ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Yarkand deer MODERN SPECIES 30 MLIP (ENSCHYG00000004113) TINAG (ENSCHYG00000004199) LRRC1 (ENSCHYG00000004239) KLHL31 (ENSCHYG00000004258) GCLC (ENSCHYG00000004293) ENSCHYG00000004336 ENSCHYG00000004358 ENSCHYG00000004368 HLA-DOB (ENSCHYG00000004391) #14 TAP2 (ENSCHYG00000004426) #15 PSMB8 (ENSCHYG00000004467) #16 TAP1 (ENSCHYG00000004483) #17 ENSCHYG00000004500 #18 HLA-DMB (ENSCHYG00000004514) #19 HLA-DMA (ENSCHYG00000004520) #20 BRD2 (ENSCHYG00000004539) #22 HLA-DOA (ENSCHYG00000004561) #23 COL11A2 (ENSCHYG00000004624) #26 RING1 (ENSCHYG00000004682) #30 VPS52 (ENSCHYG00000004695) #31 RPS18 (ENSCHYG00000004733) #32 B3GALT4 (ENSCHYG00000004743) #33 WDR46 (ENSCHYG00000004759) #34 PFDN6 (ENSCHYG00000004871) #35 RGL2 (ENSCHYG00000004896) #36 TAPBP (ENSCHYG00000004933) #37 ZBTB22 (ENSCHYG00000004990) DAXX (ENSCHYG00000005013) SMIM40 (ENSCHYG00000005026) KIFC1 (ENSCHYG00000005051) PHF1 (ENSCHYG00000005145) Percora_a ANCESTRAL SPECIES 12 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Siberian musk deer MODERN SPECIES 355 FAM83B (ENSMMSG00000020897) TINAG (ENSMMSG00000020918) MLIP (ENSMMSG00000021042) LRRC1 (ENSMMSG00000021202) KLHL31 (ENSMMSG00000021339) GCLC (ENSMMSG00000021373) ENSMMSG00000021536 ENSMMSG00000022087 ENSMMSG00000022107 HLA-DOB (ENSMMSG00000022133) #14 TAP1 (ENSMMSG00000022156) #17 PSMB8 (ENSMMSG00000022217) #16 PSMB9 (ENSMMSG00000022236) #18 HLA-DMB (ENSMMSG00000022257) #19 HLA-DMA (ENSMMSG00000022283) #20 BRD2 (ENSMMSG00000022334) #22 HLA-DOA (ENSMMSG00000022389) #23 COL11A2 (ENSMMSG00000022475) #26 RXRB (ENSMMSG00000023046) #27 SLC39A7 (ENSMMSG00000023058) #28 HSD17B8 (ENSMMSG00000023067) #29 RING1 (ENSMMSG00000023081) #30 VPS52 (ENSMMSG00000023094) #31 RPS18 (ENSMMSG00000023117) #32 B3GALT4 (ENSMMSG00000023125) #33 WDR46 (ENSMMSG00000023133) #34 ENSMMSG00000023143 #35 RGL2 (ENSMMSG00000023157) #36 TAPBP (ENSMMSG00000023185) #37 ZBTB22 (ENSMMSG00000023203) DAXX (ENSMMSG00000023208) Bovidae ANCESTRAL SPECIES 13 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b.nb ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Caprinae ANCESTRAL SPECIES 16 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b.nb ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Goat MODERN SPECIES 15 ENSCHIG00000020109 LRRC1 (ENSCHIG00000021002) KLHL31 (ENSCHIG00000003573) GCLC (ENSCHIG00000013397) ENSCHIG00000009662 ENSCHIG00000022158 ENSCHIG00000013102 HLA-DOB (ENSCHIG00000010527) #14 ENSCHIG00000019853 TAP2 (ENSCHIG00000017732) #15 PSMB8 (ENSCHIG00000012829) #16 TAP1 (ENSCHIG00000021983) #17 PSMB9 (ENSCHIG00000021513) #18 HLA-DMB (ENSCHIG00000026519) #19 HLA-DMA (ENSCHIG00000009464) #20 BRD2 (ENSCHIG00000013946) #22 HLA-DOA (ENSCHIG00000014302) #23 COL11A2 (ENSCHIG00000012269) #26 RXRB (ENSCHIG00000010266) #27 SLC39A7 (ENSCHIG00000024209) #28 HSD17B8 (ENSCHIG00000017839) #29 RING1 (ENSCHIG00000015685) #30 VPS52 (ENSCHIG00000023524) #31 RPS18 (ENSCHIG00000025263) ##32 B3GALT4 (ENSCHIG00000013295) #33 WDR46 (ENSCHIG00000017786) #34 ENSCHIG00000021078 #35 RGL2 (ENSCHIG00000009307) #36 TAPBP (ENSCHIG00000010108) #37 ZBTB22 (ENSCHIG00000003375) ENSCHIG00000013938 Rambouillet Sheep MODERN SPECIES 12 GCLC (ENSOARG00020024970) ENSOARG00020025012 ENSOARG00020025022 ENSOARG00020025038 ENSOARG00020025077 DYA (ENSOARG00020025089) ENSOARG00020025100 ENSOARG00020025111 HLA-DOB (ENSOARG00020025120) #14 TAP2 (ENSOARG00020025129) #15 PSMB8 (ENSOARG00020025156) #16 TAP1 (ENSOARG00020025187) #17 ENSOARG00020025249 #18 HLA-DMB (ENSOARG00020025272) #19 HLA-DMA (ENSOARG00020025286) #20 BRD2 (ENSOARG00020011534) #22 HLA-DOA (ENSOARG00020011582) #23 COL11A2 (ENSOARG00020011636) #26 RXRB (ENSOARG00020011980) #27 SLC39A7 (ENSOARG00020012152) #28 HSD17B8 (ENSOARG00020012212) #29 RING1 (ENSOARG00020012299) #30 VPS52 (ENSOARG00020012385) #31 RPS18 (ENSOARG00020012536) #32 B3GALT4 (ENSOARG00020012594) #33 WDR46 (ENSOARG00020012626) #34 PFDN6 (ENSOARG00020012726) #35 RGL2 (ENSOARG00020012842) #36 TAPBP (ENSOARG00020013171) #37 ZBTB22 (ENSOARG00020013358) DAXX (ENSOARG00020013385) Bovinae ANCESTRAL SPECIES 9 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b.nb.d ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 American bison MODERN SPECIES 3186 MLIP (ENSBBBG00000016140) LRRC1 (ENSBBBG00000016027) KLHL31 (ENSBBBG00000002569) GCLC (ENSBBBG00000015998) ENSBBBG00000015836 ENSBBBG00000015297 ENSBBBG00000015280 HLA-DOB (ENSBBBG00000015275) #14 TAP2 (ENSBBBG00000015257) #15 PSMB8 (ENSBBBG00000015244) #16 TAP1 (ENSBBBG00000015234) #17 PSMB9 (ENSBBBG00000003777) #18 ENSBBBG00000015200 HLA-DMB (ENSBBBG00000008914) #19 HLA-DMA (ENSBBBG00000015169) #20 BRD2 (ENSBBBG00000002785) #22 HLA-DOA (ENSBBBG00000015112) #23 ENSBBBG00000003746 #26 RXRB (ENSBBBG00000015089) #27 SLC39A7 (ENSBBBG00000014969) #28 HSD17B8 (ENSBBBG00000003696) #29 RING1 (ENSBBBG00000003692) #30 VPS52 (ENSBBBG00000003598) #31 RPS18 (ENSBBBG00000003625) #32 B3GALT4 (ENSBBBG00000003638) #33 WDR46 (ENSBBBG00000014933) #34 PFDN6 (ENSBBBG00000014925) #35 RGL2 (ENSBBBG00000000845) #36 TAPBP (ENSBBBG00000000871) #37 ZBTB22 (ENSBBBG00000000917) DAXX (ENSBBBG00000000938) Bos ANCESTRAL SPECIES 17 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b.nb.d ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Bos_b ANCESTRAL SPECIES 8 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b.nb.d ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Hybrid Bos Indicus MODERN SPECIES 15 ENSBIXG00005015134 LRRC1 (ENSBIXG00005002222) KLHL31 (ENSBIXG00005007502) GCLC (ENSBIXG00005015026) ENSBIXG00005014945 ENSBIXG00005014931 ENSBIXG00005007128 HLA-DOB (ENSBIXG00005014905) #14 TAP2 (ENSBIXG00005014872) #15 PSMB8 (ENSBIXG00005014824) #16 TAP1 (ENSBIXG00005014801) #17 PSMB9 (ENSBIXG00005014787) #18 ENSBIXG00005014770 HLA-DMB (ENSBIXG00005014762) #19 HLA-DMA (ENSBIXG00005014743) #20 BRD2 (ENSBIXG00005014704) #22 HLA-DOA (ENSBIXG00005014640) #23 COL11A2 (ENSBIXG00005014598) #26 RXRB (ENSBIXG00005014520) #27 SLC39A7 (ENSBIXG00005014473) #28 HSD17B8 (ENSBIXG00005001937) #29 RING1 (ENSBIXG00005006128) #30 VPS52 (ENSBIXG00005014413) #31 RPS18 (ENSBIXG00005006736) ##32 B3GALT4 (ENSBIXG00005014338) #33 WDR46 (ENSBIXG00005014304) #34 PFDN6 (ENSBIXG00005014270) #35 RGL2 (ENSBIXG00005014224) #36 TAPBP (ENSBIXG00005006125) #37 ZBTB22 (ENSBIXG00005014096) DAXX (ENSBIXG00005001833) Cow MODERN SPECIES 15 MLIP (ENSBTAG00000014581) LRRC1 (ENSBTAG00000017533) KLHL31 (ENSBTAG00000018167) GCLC (ENSBTAG00000015571) DSB (ENSBTAG00000050757) BOLA-DYA (ENSBTAG00000002581) BOLA-DYB (ENSBTAG00000045923) BOLA-DOB (ENSBTAG00000047707) #14 TAP2 (ENSBTAG00000003038) #15 PSMB8 (ENSBTAG00000003039) #16 TAP1 (ENSBTAG00000008953) #17 PSMB9 (ENSBTAG00000008954) #18 H2B (ENSBTAG00000051545) BOLA-DMB (ENSBTAG00000012451) #19 BOLA-DMA (ENSBTAG00000015730) #20 BRD2 (ENSBTAG00000011074) #22 BOLA-DOA (ENSBTAG00000006490) #23 COL11A2 (ENSBTAG00000000601) #26 RXRB (ENSBTAG00000000602) #27 SLC39A7 (ENSBTAG00000008191) #28 HSD17B8 (ENSBTAG00000020927) #29 RING1 (ENSBTAG00000018884) #30 VPS52 (ENSBTAG00000002643) #31 RPS18 (ENSBTAG00000002648) ##32 B3GALT4 (ENSBTAG00000025669) #33 WDR46 (ENSBTAG00000016824) #34 PFDN6 (ENSBTAG00000010723) #35 RGL2 (ENSBTAG00000016827) #36 TAPBP (ENSBTAG00000016828) #37 ZBTB22 (ENSBTAG00000016829) DAXX (ENSBTAG00000016830) Bos_a ANCESTRAL SPECIES 11 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000161821.d.f ENSGT00940000154723.b.nb.d ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Domestic yak DUPLICATION Domestic yak MODERN SPECIES 27 ENSBGRG00000024308 ENSBGRG00000024300 ENSBGRG00000024282 ENSBGRG00000024273 ENSBGRG00000024190 ENSBGRG00000024011 ENSBGRG00000023854 ENSBGRG00000023633 ENSBGRG00000022876 CYP4F22 (ENSBGRG00000022745) PGLYRP2 (ENSBGRG00000022693) RASAL3 (ENSBGRG00000022665) WIZ (ENSBGRG00000022240) AKAP8L (ENSBGRG00000022043) AKAP8 (ENSBGRG00000021898) ENSBGRG00000021854 #22 ENSBGRG00000021799 EPHX3 (ENSBGRG00000021673) NOTCH3 (ENSBGRG00000018066) ENSBGRG00000017844 ILVBL (ENSBGRG00000017727) SYDE1 (ENSBGRG00000017591) ENSBGRG00000017568 ENSBGRG00000017455 CASP14 (ENSBGRG00000017337) CCDC105 (ENSBGRG00000017152) SLC1A6 (ENSBGRG00000016741) ENSBGRG00000016668 ENSBGRG00000016627 ENSBGRG00000016606 ENSBGRG00000016595 Domestic yak MODERN SPECIES 16 MLIP (ENSBGRG00000023693) LRRC1 (ENSBGRG00000023507) KLHL31 (ENSBGRG00000023447) GCLC (ENSBGRG00000022619) ENSBGRG00000022571 ENSBGRG00000022508 ENSBGRG00000022452 ENSBGRG00000022408 HLA-DOB (ENSBGRG00000022347) #14 TAP2 (ENSBGRG00000022189) #15 PSMB8 (ENSBGRG00000022108) #16 TAP1 (ENSBGRG00000022060) #17 ENSBGRG00000021991 #18 HLA-DMB (ENSBGRG00000021922) #19 HLA-DMA (ENSBGRG00000021851) #20 BRD2 (ENSBGRG00000021629) #22 HLA-DOA (ENSBGRG00000021588) #23 COL11A2 (ENSBGRG00000019137) #26 RXRB (ENSBGRG00000019018) #27 SLC39A7 (ENSBGRG00000018980) #28 HSD17B8 (ENSBGRG00000018839) #29 RING1 (ENSBGRG00000018754) #30 VPS52 (ENSBGRG00000018459) #31 B3GALT4 (ENSBGRG00000018285) #33 WDR46 (ENSBGRG00000017950) #34 PFDN6 (ENSBGRG00000017800) #35 RGL2 (ENSBGRG00000017715) #36 TAPBP (ENSBGRG00000017312) #37 ZBTB22 (ENSBGRG00000017270) DAXX (ENSBGRG00000017181) SMIM40 (ENSBGRG00000017145) Wild yak DUPLICATION Wild yak MODERN SPECIES 1619 ENSBMUG00000011458 ENSBMUG00000011482 ENSBMUG00000011515 ENSBMUG00000011552 ENSBMUG00000011627 ENSBMUG00000011731 ENSBMUG00000011774 ENSBMUG00000011822 ENSBMUG00000011875 CYP4F22 (ENSBMUG00000011890) PGLYRP2 (ENSBMUG00000011932) RASAL3 (ENSBMUG00000011972) WIZ (ENSBMUG00000012029) AKAP8L (ENSBMUG00000012103) AKAP8 (ENSBMUG00000012119) ENSBMUG00000012134 #22 ENSBMUG00000012143 EPHX3 (ENSBMUG00000012149) NOTCH3 (ENSBMUG00000013018) ENSBMUG00000013201 ILVBL (ENSBMUG00000013223) ENSBMUG00000013242 ENSBMUG00000013258 ENSBMUG00000013277 ENSBMUG00000013302 CASP14 (ENSBMUG00000013317) CCDC105 (ENSBMUG00000013339) ENSBMUG00000013356 ENSBMUG00000013368 ENSBMUG00000013377 ENSBMUG00000013410 Wild yak MODERN SPECIES 401 LRRC1 (ENSBMUG00000005342) KLHL31 (ENSBMUG00000005354) GCLC (ENSBMUG00000005430) ENSBMUG00000006036 ENSBMUG00000007873 ENSBMUG00000007890 HLA-DOB (ENSBMUG00000007908) #14 TAP2 (ENSBMUG00000007931) #15 PSMB8 (ENSBMUG00000007942) #16 TAP1 (ENSBMUG00000007967) #17 PSMB9 (ENSBMUG00000007982) #18 ENSBMUG00000007993 HLA-DMB (ENSBMUG00000008003) #19 HLA-DMA (ENSBMUG00000008047) #20 BRD2 (ENSBMUG00000008066) #22 HLA-DOA (ENSBMUG00000008090) #23 COL11A2 (ENSBMUG00000008342) #26 RXRB (ENSBMUG00000008461) #27 SLC39A7 (ENSBMUG00000008706) #28 HSD17B8 (ENSBMUG00000008752) #29 RING1 (ENSBMUG00000008786) #30 VPS52 (ENSBMUG00000008802) #31 ENSBMUG00000008818 #32 B3GALT4 (ENSBMUG00000008835) #33 WDR46 (ENSBMUG00000008867) #34 PFDN6 (ENSBMUG00000008885) #35 RGL2 (ENSBMUG00000008900) #36 TAPBP (ENSBMUG00000008952) #37 ZBTB22 (ENSBMUG00000008980) DAXX (ENSBMUG00000008993) Cetacea ANCESTRAL SPECIES 7 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.g #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Blue whale MODERN SPECIES 2 HCRTR2 (ENSBMSG00010011945) FAM83B (ENSBMSG00010011937) TINAG (ENSBMSG00010011903) MLIP (ENSBMSG00010011840) LRRC1 (ENSBMSG00010011758) KLHL31 (ENSBMSG00010011739) GCLC (ENSBMSG00010011645) ENSBMSG00010011564 HLA-DOB (ENSBMSG00010011526) #14 TAP2 (ENSBMSG00010011505) #15 PSMB8 (ENSBMSG00010011493) #16 TAP1 (ENSBMSG00010011477) #17 PSMB9 (ENSBMSG00010011462) #18 HLA-DMB (ENSBMSG00010011446) #19 HLA-DMA (ENSBMSG00010011432) #20 BRD2 (ENSBMSG00010011399) #22 HLA-DOA (ENSBMSG00010011380) #23 ENSBMSG00010011366 #25 COL11A2 (ENSBMSG00010010982) #26 RXRB (ENSBMSG00010010818) #27 SLC39A7 (ENSBMSG00010010802) #28 HSD17B8 (ENSBMSG00010010786) #29 ENSBMSG00010010769 #30 VPS52 (ENSBMSG00010010756) #31 RPS18 (ENSBMSG00010010743) #32 B3GALT4 (ENSBMSG00010010736) #33 WDR46 (ENSBMSG00010010725) #34 ENSBMSG00010010714 #35 RGL2 (ENSBMSG00010010689) #36 TAPBP (ENSBMSG00010010652) #37 ZBTB22 (ENSBMSG00010010638) Odontoceti ANCESTRAL SPECIES 5 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.g #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.g #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Odontoceti_b ANCESTRAL SPECIES 6 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000154732.q.b.a ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.g #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Monodontidae ANCESTRAL SPECIES 4 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000154732.q.b.a ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.g #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Narwhal MODERN SPECIES 310 FAM83B (ENSMMNG00015013752) TINAG (ENSMMNG00015013728) ENSMMNG00015013701 MLIP (ENSMMNG00015013648) LRRC1 (ENSMMNG00015013594) KLHL31 (ENSMMNG00015013579) GCLC (ENSMMNG00015013551) ENSMMNG00015013533 HLA-DOB (ENSMMNG00015013519) #14 TAP2 (ENSMMNG00015013343) #15 PSMB8 (ENSMMNG00015013325) #16 TAP1 (ENSMMNG00015013311) #17 PSMB9 (ENSMMNG00015013288) #18 HLA-DMB (ENSMMNG00015013276) #19 HLA-DMA (ENSMMNG00015013256) #20 BRD2 (ENSMMNG00015013179) #22 ENSMMNG00015013152 HLA-DOA (ENSMMNG00015013123) #23 ENSMMNG00015013117 #25 COL11A2 (ENSMMNG00015012846) #26 RXRB (ENSMMNG00015012697) #27 SLC39A7 (ENSMMNG00015012682) #28 HSD17B8 (ENSMMNG00015012658) #29 ENSMMNG00015012638 #30 VPS52 (ENSMMNG00015012607) #31 ENSMMNG00015012591 #32 B3GALT4 (ENSMMNG00015012584) #33 WDR46 (ENSMMNG00015012564) #34 PFDN6 (ENSMMNG00015012541) #35 RGL2 (ENSMMNG00015012522) #36 TAPBP (ENSMMNG00015012480) #37 Beluga whale MODERN SPECIES 8 FAM83B (ENSDLEG00000021984) TINAG (ENSDLEG00000021985) ENSDLEG00000021986 MLIP (ENSDLEG00000021987) LRRC1 (ENSDLEG00000021988) ENSDLEG00000021989 KLHL31 (ENSDLEG00000021990) GCLC (ENSDLEG00000021991) ENSDLEG00000021992 TAP2 (ENSDLEG00000021994) #15 PSMB8 (ENSDLEG00000021995) #16 TAP1 (ENSDLEG00000021996) #17 PSMB9 (ENSDLEG00000008143) #18 HLA-DMB (ENSDLEG00000008166) #19 HLA-DMA (ENSDLEG00000008210) #20 BRD2 (ENSDLEG00000008248) #22 ENSDLEG00000008322 HLA-DOA (ENSDLEG00000008482) #23 COL11A2 (ENSDLEG00000008562) #26 RXRB (ENSDLEG00000008760) #27 SLC39A7 (ENSDLEG00000008789) #28 HSD17B8 (ENSDLEG00000008819) #29 RING1 (ENSDLEG00000008919) #30 VPS52 (ENSDLEG00000008948) #31 RPS18 (ENSDLEG00000009077) #32 B3GALT4 (ENSDLEG00000009097) #33 WDR46 (ENSDLEG00000009126) #34 PFDN6 (ENSDLEG00000009394) #35 RGL2 (ENSDLEG00000009432) #36 ENSDLEG00000009529 TAPBP (ENSDLEG00000009539) #37 Vaquita MODERN SPECIES 2 HCRTR2 (ENSPSNG00000016655) FAM83B (ENSPSNG00000016755) TINAG (ENSPSNG00000016830) MLIP (ENSPSNG00000017046) ENSPSNG00000017462 KLHL31 (ENSPSNG00000017492) GCLC (ENSPSNG00000017555) ENSPSNG00000017762 HLA-DOB (ENSPSNG00000017969) #14 TAP2 (ENSPSNG00000018051) #15 PSMB8 (ENSPSNG00000018160) #16 TAP1 (ENSPSNG00000018201) #17 PSMB9 (ENSPSNG00000018232) #18 HLA-DMB (ENSPSNG00000018284) #19 HLA-DMA (ENSPSNG00000018364) #20 BRD2 (ENSPSNG00000018549) #22 ENSPSNG00000018620 HLA-DOA (ENSPSNG00000018672) #23 ENSPSNG00000018732 #25 COL11A2 (ENSPSNG00000019010) #26 RXRB (ENSPSNG00000020305) #27 SLC39A7 (ENSPSNG00000020344) #28 HSD17B8 (ENSPSNG00000020389) #29 RING1 (ENSPSNG00000020433) #30 VPS52 (ENSPSNG00000020483) #31 B3GALT4 (ENSPSNG00000020525) #33 WDR46 (ENSPSNG00000020574) #34 PFDN6 (ENSPSNG00000020614) #35 RGL2 (ENSPSNG00000011206) #36 TAPBP (ENSPSNG00000011408) #37 ZBTB22 (ENSPSNG00000011484) Dolphin MODERN SPECIES 2738 HLA-DOB (ENSTTRG00000004249) #14 TAP2 (ENSTTRG00000004254) #15 PSMB8 (ENSTTRG00000004259) #16 TAP1 (ENSTTRG00000004264) #17 PSMB9 (ENSTTRG00000004272) #18 HLA-DMB (ENSTTRG00000004276) #19 HLA-DMA (ENSTTRG00000004277) #20 BRD2 (ENSTTRG00000004278) #22 HLA-DOA (ENSTTRG00000004282) #23 COL11A2 (ENSTTRG00000004283) #26 RXRB (ENSTTRG00000004291) #27 SLC39A7 (ENSTTRG00000004293) #28 HSD17B8 (ENSTTRG00000004294) #29 RING1 (ENSTTRG00000004296) #30 VPS52 (ENSTTRG00000004298) #31 RPS18 (ENSTTRG00000004302) #32 WDR46 (ENSTTRG00000004304) #34 PFDN6 (ENSTTRG00000004306) #35 RGL2 (ENSTTRG00000004307) #36 TAPBP (ENSTTRG00000004309) #37 ZBTB22 (ENSTTRG00000004311) DAXX (ENSTTRG00000004312) Sperm whale DUPLICATION Sperm whale MODERN SPECIES 9 GFRAL (ENSPCTG00005020543) HCRTR2 (ENSPCTG00005020624) FAM83B (ENSPCTG00005020744) TINAG (ENSPCTG00005020766) MLIP (ENSPCTG00005020921) LRRC1 (ENSPCTG00005021134) KLHL31 (ENSPCTG00005021169) GCLC (ENSPCTG00005021190) ENSPCTG00005021294 #25 HLA-DOB (ENSPCTG00005021383) #14 TAP2 (ENSPCTG00005021415) #15 PSMB8 (ENSPCTG00005021456) #16 TAP1 (ENSPCTG00005021480) #17 PSMB9 (ENSPCTG00005008969) #18 HLA-DMB (ENSPCTG00005009080) #19 ENSPCTG00005009114 #22 HLA-DOA (ENSPCTG00005009319) #23 COL11A2 (ENSPCTG00005009478) #26 RXRB (ENSPCTG00005011572) #27 SLC39A7 (ENSPCTG00005011775) #28 HSD17B8 (ENSPCTG00005011876) #29 RING1 (ENSPCTG00005011923) #30 ENSPCTG00005011963 KIFC1 (ENSPCTG00005012002) PHF1 (ENSPCTG00005012052) CUTA (ENSPCTG00005012115) SYNGAP1 (ENSPCTG00005012336) ENSPCTG00005014008 ZBTB9 (ENSPCTG00005014057) BAK1 (ENSPCTG00005014079) ENSPCTG00005014198 Sperm whale MODERN SPECIES 603 ENSPCTG00005016431 #20 ENSPCTG00005016571 #22 Suina ANCESTRAL SPECIES 17 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000155371.n ENSGT00940000155371.m.a.a ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00940000158644 ENSGT00940000159467 ENSGT00730000111274 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 Pig MODERN SPECIES 15 ENSSSCG00000031336 ENSSSCG00000061569 ENSSSCG00000001455 ENSSSCG00000001456 SLA-DQB1 (ENSSSCG00000001457) ENSSSCG00000043413 ENSSSCG00000001458 ENSSSCG00000063263 HLA-DOB (ENSSSCG00000001459) #14 TAP2 (ENSSSCG00000025593) #15 PSMB8 (ENSSSCG00000026951) #16 PSMB9 (ENSSSCG00000001463) #18 TAP1 (ENSSSCG00000025618) #17 SLA-DMB (ENSSSCG00000001469) #19 SLA-DMA (ENSSSCG00000001470) #20 BRD2 (ENSSSCG00000001471) #22 SLA-DOA (ENSSSCG00000001472) #23 COL11A2 (ENSSSCG00000001473) #26 RXRB (ENSSSCG00000001474) #27 SLC39A7 (ENSSSCG00000001475) #28 HSD17B8 (ENSSSCG00000001476) #29 RING1 (ENSSSCG00000001477) #30 BMP5 (ENSSSCG00000001478) HMGCLL1 (ENSSSCG00000001479) GFRAL (ENSSSCG00000001480) HCRTR2 (ENSSSCG00000001481) FAM83B (ENSSSCG00000001483) TINAG (ENSSSCG00000001484) MLIP (ENSSSCG00000001485) LRRC1 (ENSSSCG00000001486) KLHL31 (ENSSSCG00000001487) Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 769 TPM4 (ENSCWAG00000008256) ENSCWAG00000008234 ENSCWAG00000008205 ENSCWAG00000008182 ENSCWAG00000008119 ENSCWAG00000008036 CYP4F3 (ENSCWAG00000007816) ENSCWAG00000009707 ENSCWAG00000009689 CYP4F22 (ENSCWAG00000009588) PGLYRP2 (ENSCWAG00000009528) RASAL3 (ENSCWAG00000009433) WIZ (ENSCWAG00000009199) AKAP8L (ENSCWAG00000009126) AKAP8 (ENSCWAG00000009086) ENSCWAG00000009037 #22 ENSCWAG00000008990 EPHX3 (ENSCWAG00000008924) ENSCWAG00000008892 NOTCH3 (ENSCWAG00000008816) ILVBL (ENSCWAG00000008774) SYDE1 (ENSCWAG00000008680) OR1I1 (ENSCWAG00000008665) CASP14 (ENSCWAG00000008585) CCDC105 (ENSCWAG00000008495) SLC1A6 (ENSCWAG00000008123) ENSCWAG00000008078 ENSCWAG00000008055 ENSCWAG00000007999 ENSCWAG00000007986 ENSCWAG00000007935 Chacoan peccary MODERN SPECIES 782 ENSCWAG00000017173 BTNL2 (ENSCWAG00000017038) HLA-DRA (ENSCWAG00000016997) ENSCWAG00000016954 ENSCWAG00000016932 ENSCWAG00000016903 HLA-DQB1 (ENSCWAG00000016835) ENSCWAG00000016773 #14 ENSCWAG00000016717 #14 TAP2 (ENSCWAG00000016671) #15 PSMB8 (ENSCWAG00000016617) #16 TAP1 (ENSCWAG00000016313) #17 PSMB9 (ENSCWAG00000016225) #18 HLA-DMB (ENSCWAG00000016177) #19 HLA-DMA (ENSCWAG00000016104) #20 BRD2 (ENSCWAG00000015939) #22 HLA-DOA (ENSCWAG00000015899) #23 COL11A2 (ENSCWAG00000013860) #26 SLC39A7 (ENSCWAG00000013691) #28 HSD17B8 (ENSCWAG00000013599) #29 RING1 (ENSCWAG00000013538) #30 BMP5 (ENSCWAG00000013472) HMGCLL1 (ENSCWAG00000012792) GFRAL (ENSCWAG00000012676) HCRTR2 (ENSCWAG00000012598) FAM83B (ENSCWAG00000012542) TINAG (ENSCWAG00000012390) MLIP (ENSCWAG00000011825) LRRC1 (ENSCWAG00000011723) KLHL31 (ENSCWAG00000011695) GCLC (ENSCWAG00000011415) Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000154993 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Carnivora ANCESTRAL SPECIES 4 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Caniformia ANCESTRAL SPECIES 3 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000161847 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Canidae ANCESTRAL SPECIES 6 ENSGT00940000162450.p ENSGT00940000162079 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815.g.b #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Red fox DUPLICATION Red fox MODERN SPECIES 5 ENSVVUG00000020319 ENSVVUG00000020321 ENSVVUG00000020322 ENSVVUG00000020323 ENSVVUG00000020324 ENSVVUG00000020325 ENSVVUG00000020329 CYP4F2 (ENSVVUG00000020330) CYP4F8 (ENSVVUG00000020339) CYP4F22 (ENSVVUG00000020345) PGLYRP2 (ENSVVUG00000020368) RASAL3 (ENSVVUG00000020370) WIZ (ENSVVUG00000020383) AKAP8L (ENSVVUG00000020394) AKAP8 (ENSVVUG00000020457) ENSVVUG00000020467 #22 EPHX3 (ENSVVUG00000020533) NOTCH3 (ENSVVUG00000020620) ILVBL (ENSVVUG00000021444) SYDE1 (ENSVVUG00000021449) ENSVVUG00000021453 CASP14 (ENSVVUG00000021454) CCDC105 (ENSVVUG00000021459) SLC1A6 (ENSVVUG00000021456) OR7C2 (ENSVVUG00000021463) ENSVVUG00000021464 ENSVVUG00000021466 ENSVVUG00000021467 ENSVVUG00000021468 ENSVVUG00000021469 ENSVVUG00000021470 Red fox MODERN SPECIES 7 ENSVVUG00000025071 HLA-DOB (ENSVVUG00000025078) #14 TAP2 (ENSVVUG00000025111) #15 PSMB8 (ENSVVUG00000025115) #16 TAP1 (ENSVVUG00000025116) #17 PSMB9 (ENSVVUG00000025119) #18 HLA-DMB (ENSVVUG00000025122) #19 HLA-DMA (ENSVVUG00000025127) #20 BRD2 (ENSVVUG00000025130) #22 HLA-DOA (ENSVVUG00000025133) #23 HLA-DPA1 (ENSVVUG00000025137) #24 ENSVVUG00000025174 #25 RXRB (ENSVVUG00000025262) #27 SLC39A7 (ENSVVUG00000025265) #28 HSD17B8 (ENSVVUG00000025268) #29 RING1 (ENSVVUG00000025271) #30 ENSVVUG00000025286 #31 RPS18 (ENSVVUG00000025443) #32 B3GALT4 (ENSVVUG00000025447) #33 WDR46 (ENSVVUG00000025460) #34 PFDN6 (ENSVVUG00000025545) #35 RGL2 (ENSVVUG00000025551) #36 TAPBP (ENSVVUG00000025586) #37 ZBTB22 (ENSVVUG00000025590) Canis_lupus ANCESTRAL SPECIES 11 ENSGT00940000162450.o ENSGT00940000162079 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815.g.b #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.e.b #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Dingo DUPLICATION Dingo MODERN SPECIES 112 ENSCAFG00020009647 ENSCAFG00020009643 ENSCAFG00020009639 ENSCAFG00020009635 ENSCAFG00020009625 ENSCAFG00020009621 ENSCAFG00020009613 ENSCAFG00020009611 CYP4F8 (ENSCAFG00020009605) CYP4F22 (ENSCAFG00020009588) PGLYRP2 (ENSCAFG00020009549) RASAL3 (ENSCAFG00020009538) WIZ (ENSCAFG00020009522) AKAP8L (ENSCAFG00020009405) AKAP8 (ENSCAFG00020009384) ENSCAFG00020009378 #22 ENSCAFG00020009367 EPHX3 (ENSCAFG00020009361) NOTCH3 (ENSCAFG00020008048) ILVBL (ENSCAFG00020007952) SYDE1 (ENSCAFG00020007950) CASP14 (ENSCAFG00020007940) CCDC105 (ENSCAFG00020007933) SLC1A6 (ENSCAFG00020007848) OR1I1 (ENSCAFG00020007835) ENSCAFG00020007829 ENSCAFG00020007824 ENSCAFG00020007823 ENSCAFG00020007818 ENSCAFG00020007812 ENSCAFG00020007803 Dingo MODERN SPECIES 276 ENSCAFG00020001614 BTNL2 (ENSCAFG00020001628) ENSCAFG00020001656 HLA-DRA (ENSCAFG00020001663) ENSCAFG00020001671 ENSCAFG00020001673 HLA-DQB1 (ENSCAFG00020001679) ENSCAFG00020001685 HLA-DOB (ENSCAFG00020001693) #14 TAP2 (ENSCAFG00020001827) #15 PSMB8 (ENSCAFG00020002521) #16 TAP1 (ENSCAFG00020002523) #17 PSMB9 (ENSCAFG00020002528) #18 HLA-DMB (ENSCAFG00020002532) #19 HLA-DMA (ENSCAFG00020002536) #20 BRD2 (ENSCAFG00020002542) #22 HLA-DOA (ENSCAFG00020002545) #23 ENSCAFG00020002592 #25 ENSCAFG00020003072 #26 ENSCAFG00020003093 #26 RXRB (ENSCAFG00020003098) #27 SLC39A7 (ENSCAFG00020003166) #28 HSD17B8 (ENSCAFG00020003175) #29 RING1 (ENSCAFG00020003221) #30 ENSCAFG00020003224 #31 RPS18 (ENSCAFG00020003254) #32 B3GALT4 (ENSCAFG00020003269) #33 WDR46 (ENSCAFG00020003271) #34 ENSCAFG00020003316 #35 RGL2 (ENSCAFG00020003330) #36 TAPBP (ENSCAFG00020003337) #37 Dog DUPLICATION Dog MODERN SPECIES 12 ENSCAFG00845015378 ENSCAFG00845015399 OR10H4D (ENSCAFG00845015413) ENSCAFG00845015428 OR10H4C (ENSCAFG00845015442) OR10H1E (ENSCAFG00845015463) OR10H5B (ENSCAFG00845015484) ENSCAFG00845015502 ENSCAFG00845015524 ENSCAFG00845015783 ENSCAFG00845016360 PGLYRP2 (ENSCAFG00845016433) RASAL3 (ENSCAFG00845016503) WIZ (ENSCAFG00845017125) AKAP8 (ENSCAFG00845017790) BRD4 (ENSCAFG00845018129) #22 EPHX3 (ENSCAFG00845018546) NOTCH3 (ENSCAFG00845018638) ILVBL (ENSCAFG00845018872) SYDE1 (ENSCAFG00845019022) OR1I1 (ENSCAFG00845019109) CASP14 (ENSCAFG00845019146) ENSCAFG00845019211 CCDC105 (ENSCAFG00845019260) SLC1A6 (ENSCAFG00845019363) OR7C19 (ENSCAFG00845019569) OR7A26 (ENSCAFG00845019591) ENSCAFG00845019620 OR7A56 (ENSCAFG00845019791) OR7A71 (ENSCAFG00845019809) ENSCAFG00845019840 Dog MODERN SPECIES 3 ENSCAFG00845016762 ENSCAFG00845016831 ENSCAFG00845016861 ENSCAFG00845016990 ENSCAFG00845017104 BTNL2 (ENSCAFG00845017222) ENSCAFG00845017367 DLA-DRA (ENSCAFG00845017467) DLA-DQA1 (ENSCAFG00845017728) HLA-DQB2 (ENSCAFG00845017781) TAP2 (ENSCAFG00845017879) #15 PSMB8 (ENSCAFG00845018353) #17 PSMB9 (ENSCAFG00845018485) #18 DLA-DMB (ENSCAFG00845018536) #19 DLA-DMA (ENSCAFG00845018613) #20 BRD2 (ENSCAFG00845018726) #22 DLA-DOA (ENSCAFG00845018933) #23 ENSCAFG00845019114 #25 COL11A2 (ENSCAFG00845019587) #26 RXRB (ENSCAFG00845020447) #27 SLC39A7 (ENSCAFG00845020536) #28 HSD17B8 (ENSCAFG00845020603) #29 RING1 (ENSCAFG00845020668) #30 VPS52 (ENSCAFG00845020730) #31 RPS18 (ENSCAFG00845020845) ##32 B3GALT4 (ENSCAFG00845020962) #33 WDR46 (ENSCAFG00845021010) #34 PFDN6 (ENSCAFG00845021180) #35 RGL2 (ENSCAFG00845021267) #36 TAPBP (ENSCAFG00845021421) #37 ZBTB22 (ENSCAFG00845021534) Caniformia_b ANCESTRAL SPECIES 6 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000161847 ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mustelinae ANCESTRAL SPECIES 65 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Ferret MODERN SPECIES 318 ENSMPUG00000001924 #14 ENSMPUG00000001931 #15 PSMB8 (ENSMPUG00000001933) #16 TAP1 (ENSMPUG00000001935) #17 PSMB9 (ENSMPUG00000001940) #18 HLA-DMB (ENSMPUG00000001943) #19 HLA-DMA (ENSMPUG00000001944) #20 ENSMPUG00000001954 BRD2 (ENSMPUG00000001955) #22 HLA-DOA (ENSMPUG00000001958) #23 ENSMPUG00000001959 HLA-DPA1 (ENSMPUG00000001961) #24 ENSMPUG00000001964 #25 COL11A2 (ENSMPUG00000001968) #26 RXRB (ENSMPUG00000002273) #27 SLC39A7 (ENSMPUG00000002276) #28 RING1 (ENSMPUG00000002279) #30 VPS52 (ENSMPUG00000002300) #31 RPS18 (ENSMPUG00000002306) ##32 B3GALT4 (ENSMPUG00000018786) #33 ENSMPUG00000002317 #34 PFDN6 (ENSMPUG00000002364) #35 RGL2 (ENSMPUG00000002376) #36 TAPBP (ENSMPUG00000002383) #37 American mink DUPLICATION American mink MODERN SPECIES 58 ENSNVIG00000012069 ENSNVIG00000012064 ENSNVIG00000012057 ENSNVIG00000012037 ENSNVIG00000012034 ENSNVIG00000012029 ENSNVIG00000011997 CYP4F8 (ENSNVIG00000011913) CYP4F22 (ENSNVIG00000011878) PGLYRP2 (ENSNVIG00000011872) ENSNVIG00000011832 ENSNVIG00000011824 WIZ (ENSNVIG00000011787) AKAP8L (ENSNVIG00000011745) AKAP8 (ENSNVIG00000011718) ENSNVIG00000011695 #22 ENSNVIG00000011673 EPHX3 (ENSNVIG00000011630) NOTCH3 (ENSNVIG00000011559) ILVBL (ENSNVIG00000011526) SYDE1 (ENSNVIG00000011499) OR1I1 (ENSNVIG00000011479) CASP14 (ENSNVIG00000011472) CCDC105 (ENSNVIG00000011457) SLC1A6 (ENSNVIG00000011419) OR7C2 (ENSNVIG00000011412) ENSNVIG00000011407 ENSNVIG00000011405 American mink MODERN SPECIES 609 HLA-DOB (ENSNVIG00000004582) #14 TAP2 (ENSNVIG00000004605) #15 PSMB8 (ENSNVIG00000004658) #16 TAP1 (ENSNVIG00000004678) #17 PSMB9 (ENSNVIG00000004695) #18 HLA-DMB (ENSNVIG00000004727) #19 HLA-DMA (ENSNVIG00000004747) #20 BRD2 (ENSNVIG00000004773) #22 HLA-DOA (ENSNVIG00000004843) #23 HLA-DPA1 (ENSNVIG00000004863) #24 ENSNVIG00000004899 #25 COL11A2 (ENSNVIG00000006062) #26 RXRB (ENSNVIG00000006480) #27 SLC39A7 (ENSNVIG00000006519) #28 HSD17B8 (ENSNVIG00000006535) #29 Ursidae ANCESTRAL SPECIES 37 ENSGT00940000164957 ENSGT00940000162484.d ENSGT00940000160997 ENSGT00940000161847 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00950000183198.c.a.b.b.j ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.w #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.d #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Giant Panda MODERN SPECIES 15 ENSAMEG00000024700 ENSAMEG00000002434 ENSAMEG00000002462 BTNL2 (ENSAMEG00000002403) HLA-DRA (ENSAMEG00000002390) ENSAMEG00000002342 ENSAMEG00000024677 ENSAMEG00000026802 HLA-DOB (ENSAMEG00000029901) #14 TAP2 (ENSAMEG00000002044) #15 PSMB8 (ENSAMEG00000002026) #16 TAP1 (ENSAMEG00000001976) #17 PSMB9 (ENSAMEG00000001961) #18 ENSAMEG00000027435 HLA-DMB (ENSAMEG00000001952) #19 BRD2 (ENSAMEG00000001926) #22 HLA-DOA (ENSAMEG00000001908) #23 HLA-DPA1 (ENSAMEG00000001901) #24 ENSAMEG00000001900 #25 COL11A2 (ENSAMEG00000001744) #26 RXRB (ENSAMEG00000001719) #27 SLC39A7 (ENSAMEG00000001707) #28 HSD17B8 (ENSAMEG00000001698) #29 RING1 (ENSAMEG00000001680) #30 VPS52 (ENSAMEG00000001640) #31 RPS18 (ENSAMEG00000001623) #32 B3GALT4 (ENSAMEG00000019752) #33 WDR46 (ENSAMEG00000001583) #34 PFDN6 (ENSAMEG00000001576) #35 RGL2 (ENSAMEG00000001533) #36 TAPBP (ENSAMEG00000001518) #37 Ursus ANCESTRAL SPECIES 53 ENSGT00940000162484.d ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00950000183198.c.a.b.b.j ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.w #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.d #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 American black bear DUPLICATION American black bear MODERN SPECIES 3208 ENSUAMG00000027235 #22 American black bear MODERN SPECIES 7213 HLA-DMB (ENSUAMG00000010123) #19 HLA-DMA (ENSUAMG00000010122) #20 BRD2 (ENSUAMG00000010121) #22 Polar bear DUPLICATION Polar bear MODERN SPECIES 291 ENSUMAG00000001172 ENSUMAG00000001184 ENSUMAG00000001197 ENSUMAG00000001207 ENSUMAG00000001217 ENSUMAG00000001240 ENSUMAG00000001258 ENSUMAG00000001272 CYP4F3 (ENSUMAG00000001302) CYP4F22 (ENSUMAG00000001342) PGLYRP2 (ENSUMAG00000001695) RASAL3 (ENSUMAG00000001780) ENSUMAG00000001868 AKAP8L (ENSUMAG00000001892) AKAP8 (ENSUMAG00000001928) ENSUMAG00000001954 #22 EPHX3 (ENSUMAG00000002156) NOTCH3 (ENSUMAG00000002388) ILVBL (ENSUMAG00000003567) OR1I1 (ENSUMAG00000003584) CASP14 (ENSUMAG00000003591) CCDC105 (ENSUMAG00000003609) SLC1A6 (ENSUMAG00000003627) Polar bear MODERN SPECIES 184 HLA-DRA (ENSUMAG00000012775) ENSUMAG00000012771 ENSUMAG00000012768 HLA-DQB2 (ENSUMAG00000012766) ENSUMAG00000012761 ENSUMAG00000012755 HLA-DOB (ENSUMAG00000012747) #14 TAP2 (ENSUMAG00000012745) #15 PSMB8 (ENSUMAG00000012731) #16 TAP1 (ENSUMAG00000012701) #17 PSMB9 (ENSUMAG00000012694) #18 ENSUMAG00000012692 HLA-DMB (ENSUMAG00000012688) #19 HLA-DMA (ENSUMAG00000012683) #20 ENSUMAG00000012662 #22 ENSUMAG00000012634 #22 HLA-DOA (ENSUMAG00000012626) #23 ENSUMAG00000012616 #24 ENSUMAG00000012592 #26 RXRB (ENSUMAG00000012569) #27 SLC39A7 (ENSUMAG00000012560) #28 HSD17B8 (ENSUMAG00000012548) #29 RING1 (ENSUMAG00000012543) #30 VPS52 (ENSUMAG00000012525) #31 RPS18 (ENSUMAG00000012521) #32 WDR46 (ENSUMAG00000012375) #34 PFDN6 (ENSUMAG00000012363) #35 RGL2 (ENSUMAG00000012351) #36 TAPBP (ENSUMAG00000012349) #37 ZBTB22 (ENSUMAG00000012348) DAXX (ENSUMAG00000012343) Polar bear MODERN SPECIES 184 ENSUMAG00000012781 HLA-DRA (ENSUMAG00000012775) ENSUMAG00000012771 ENSUMAG00000012768 HLA-DQB2 (ENSUMAG00000012766) ENSUMAG00000012761 ENSUMAG00000012755 HLA-DOB (ENSUMAG00000012747) #14 TAP2 (ENSUMAG00000012745) #15 PSMB8 (ENSUMAG00000012731) #16 TAP1 (ENSUMAG00000012701) #17 PSMB9 (ENSUMAG00000012694) #18 ENSUMAG00000012692 HLA-DMB (ENSUMAG00000012688) #19 HLA-DMA (ENSUMAG00000012683) #20 ENSUMAG00000012662 #22 ENSUMAG00000012634 #22 HLA-DOA (ENSUMAG00000012626) #23 ENSUMAG00000012616 #24 ENSUMAG00000012592 #26 RXRB (ENSUMAG00000012569) #27 SLC39A7 (ENSUMAG00000012560) #28 HSD17B8 (ENSUMAG00000012548) #29 RING1 (ENSUMAG00000012543) #30 VPS52 (ENSUMAG00000012525) #31 RPS18 (ENSUMAG00000012521) #32 WDR46 (ENSUMAG00000012375) #34 PFDN6 (ENSUMAG00000012363) #35 RGL2 (ENSUMAG00000012351) #36 TAPBP (ENSUMAG00000012349) #37 ZBTB22 (ENSUMAG00000012348) Felidae ANCESTRAL SPECIES 5 ENSGT00940000162079 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993 ENSGT00940000155371.n.a.a ENSGT00940000155371.n.a.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390.p #25 ENSGT00940000162390.q #25 ENSGT00940000159762.cc #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798.h #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Cat DUPLICATION Cat MODERN SPECIES 236 ENSFCAG00000043390 #37 ENSFCAG00000049571 DAXX (ENSFCAG00000004020) ENSFCAG00000053744 ENSFCAG00000052131 ENSFCAG00000041443 ENSFCAG00000040474 #14 ENSFCAG00000009202 ENSFCAG00000045700 #15 ENSFCAG00000043821 #16 ENSFCAG00000042456 #17 ENSFCAG00000044069 #18 ENSFCAG00000050701 ENSFCAG00000045369 #19 ENSFCAG00000009442 #20 ENSFCAG00000042841 #22 ENSFCAG00000042732 #23 ENSFCAG00000044012 #24 ENSFCAG00000041258 #25 COL11A2 (ENSFCAG00000004005) #26 ENSFCAG00000006981 #27 ENSFCAG00000006984 #28 ENSFCAG00000043560 #31 ENSFCAG00000004010 #30 ENSFCAG00000045696 #32 B3GALT4 (ENSFCAG00000004015) #33 WDR46 (ENSFCAG00000004016) #34 ENSFCAG00000046037 #35 ENSFCAG00000042019 #36 ENSFCAG00000004017 #37 ENSFCAG00000050206 Cat MODERN SPECIES 236 ENSFCAG00000037191 ENSFCAG00000045335 ENSFCAG00000024834 ENSFCAG00000028529 BTNL2 (ENSFCAG00000001685) ENSFCAG00000029158 ENSFCAG00000046253 ENSFCAG00000041575 #14 ENSFCAG00000035701 #15 ENSFCAG00000023131 #16 ENSFCAG00000042806 #17 ENSFCAG00000030632 #18 ENSFCAG00000051485 ENSFCAG00000040910 #19 ENSFCAG00000041486 #20 ENSFCAG00000009696 #22 ENSFCAG00000009697 #23 ENSFCAG00000012247 #24 ENSFCAG00000041523 #25 ENSFCAG00000047214 #26 ENSFCAG00000046454 #26 ENSFCAG00000042526 #27 ENSFCAG00000050544 ENSFCAG00000046098 #28 HSD17B8 (ENSFCAG00000006986) #29 ENSFCAG00000041942 #30 VPS52 (ENSFCAG00000004011) #31 ENSFCAG00000041843 #32 ENSFCAG00000052529 #33 ENSFCAG00000051171 #34 ENSFCAG00000028199 #35 Panthera ANCESTRAL SPECIES 7 ENSGT00940000162079 ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000154993.a.a ENSGT00940000155371.n.a.a ENSGT00940000155371.n.a.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390.p #25 ENSGT00940000159762.cc #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798.h #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Tiger MODERN SPECIES 415 ENSPTIG00000006752 ENSPTIG00000006731 BTNL2 (ENSPTIG00000006701) ENSPTIG00000006461 HLA-DRA (ENSPTIG00000006439) ENSPTIG00000006308 ENSPTIG00000006266 HLA-DOB (ENSPTIG00000006225) #14 TAP2 (ENSPTIG00000006162) #15 PSMB8 (ENSPTIG00000006141) #16 TAP1 (ENSPTIG00000006078) #17 PSMB9 (ENSPTIG00000006050) #18 HLA-DMB (ENSPTIG00000006035) #19 HLA-DMA (ENSPTIG00000006011) #20 ENSPTIG00000006002 #21 BRD2 (ENSPTIG00000005977) #22 HLA-DOA (ENSPTIG00000005964) #23 HLA-DPA1 (ENSPTIG00000005948) #24 HLA-DPB1 (ENSPTIG00000005931) #25 COL11A2 (ENSPTIG00000005735) #26 RXRB (ENSPTIG00000005607) #27 SLC39A7 (ENSPTIG00000005581) #28 HSD17B8 (ENSPTIG00000005554) #29 RING1 (ENSPTIG00000005545) #30 VPS52 (ENSPTIG00000005504) #31 RPS18 (ENSPTIG00000005481) ##32 B3GALT4 (ENSPTIG00000005451) #33 WDR46 (ENSPTIG00000005439) #34 PFDN6 (ENSPTIG00000005409) #35 RGL2 (ENSPTIG00000005355) #36 TAPBP (ENSPTIG00000005317) #37 Panthera_a ANCESTRAL SPECIES 4 ENSGT00940000155371.n.a.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390.p #25 ENSGT00940000159762.cc #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798.h #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 leopard DUPLICATION leopard MODERN SPECIES 68 ENSPPRG00000020871 ENSPPRG00000020886 ENSPPRG00000020898 ENSPPRG00000022821 ENSPPRG00000020913 ENSPPRG00000000160 CYP4F3 (ENSPPRG00000001769) ENSPPRG00000002280 ENSPPRG00000002620 CYP4F22 (ENSPPRG00000002745) ENSPPRG00000003320 RASAL3 (ENSPPRG00000004906) ENSPPRG00000006238 AKAP8L (ENSPPRG00000009539) AKAP8 (ENSPPRG00000010081) ENSPPRG00000010955 #22 ENSPPRG00000011126 EPHX3 (ENSPPRG00000012477) NOTCH3 (ENSPPRG00000014001) ILVBL (ENSPPRG00000014803) SYDE1 (ENSPPRG00000017777) CASP14 (ENSPPRG00000021751) CCDC105 (ENSPPRG00000022023) SLC1A6 (ENSPPRG00000024748) ENSPPRG00000021678 ENSPPRG00000021692 ENSPPRG00000021715 ENSPPRG00000021727 ENSPPRG00000021739 ENSPPRG00000024155 ENSPPRG00000023301 leopard MODERN SPECIES 30 HLA-DOB (ENSPPRG00000010507) #14 TAP2 (ENSPPRG00000010234) #15 PSMB8 (ENSPPRG00000010024) #16 TAP1 (ENSPPRG00000009806) #17 PSMB9 (ENSPPRG00000008776) #18 HLA-DMB (ENSPPRG00000004964) #19 HLA-DMA (ENSPPRG00000004582) #20 ENSPPRG00000003175 #21 ENSPPRG00000003003 #22 ENSPPRG00000002715 #22 HLA-DOA (ENSPPRG00000002484) #23 HLA-DPA1 (ENSPPRG00000002267) #24 HLA-DPB1 (ENSPPRG00000002022) #25 COL11A2 (ENSPPRG00000001194) #26 RXRB (ENSPPRG00000010222) #27 SLC39A7 (ENSPPRG00000009227) #28 HSD17B8 (ENSPPRG00000008960) #29 RING1 (ENSPPRG00000008873) #30 VPS52 (ENSPPRG00000007986) #31 RPS18 (ENSPPRG00000006936) #32 B3GALT4 (ENSPPRG00000006033) #33 WDR46 (ENSPPRG00000005881) #34 PFDN6 (ENSPPRG00000005109) #35 RGL2 (ENSPPRG00000004409) #36 leopard MODERN SPECIES 30 HLA-DOB (ENSPPRG00000010507) #14 TAP2 (ENSPPRG00000010234) #15 PSMB8 (ENSPPRG00000010024) #16 TAP1 (ENSPPRG00000009806) #17 PSMB9 (ENSPPRG00000008776) #18 HLA-DMB (ENSPPRG00000004964) #19 HLA-DMA (ENSPPRG00000004582) #20 ENSPPRG00000003175 #21 ENSPPRG00000003003 #22 ENSPPRG00000002715 #22 HLA-DOA (ENSPPRG00000002484) #23 HLA-DPA1 (ENSPPRG00000002267) #24 HLA-DPB1 (ENSPPRG00000002022) #25 COL11A2 (ENSPPRG00000001194) #26 RXRB (ENSPPRG00000010222) #27 SLC39A7 (ENSPPRG00000009227) #28 HSD17B8 (ENSPPRG00000008960) #29 RING1 (ENSPPRG00000008873) #30 VPS52 (ENSPPRG00000007986) #31 RPS18 (ENSPPRG00000006936) #32 B3GALT4 (ENSPPRG00000006033) #33 WDR46 (ENSPPRG00000005881) #34 PFDN6 (ENSPPRG00000005109) #35 RGL2 (ENSPPRG00000004409) #36 TAPBP (ENSPPRG00000003578) #37 lion DUPLICATION lion MODERN SPECIES 2 ENSPLOG00000001031 ENSPLOG00000001019 ENSPLOG00000001003 ENSPLOG00000000987 ENSPLOG00000000975 ENSPLOG00000000957 ENSPLOG00000000908 ENSPLOG00000000866 ENSPLOG00000000847 CYP4F22 (ENSPLOG00000000828) PGLYRP2 (ENSPLOG00000000711) RASAL3 (ENSPLOG00000000606) WIZ (ENSPLOG00000000541) AKAP8L (ENSPLOG00000000459) AKAP8 (ENSPLOG00000000489) ENSPLOG00000000417 #22 ENSPLOG00000000383 EPHX3 (ENSPLOG00000000351) NOTCH3 (ENSPLOG00000000296) ILVBL (ENSPLOG00000000240) SYDE1 (ENSPLOG00000000218) CASP14 (ENSPLOG00000000190) CCDC105 (ENSPLOG00000000174) SLC1A6 (ENSPLOG00000000144) ENSPLOG00000000117 ENSPLOG00000000103 ENSPLOG00000000099 ENSPLOG00000000090 OR7C1 (ENSPLOG00000000087) ENSPLOG00000000082 ENSPLOG00000000064 lion MODERN SPECIES 5 ENSPLOG00000006575 HLA-DOB (ENSPLOG00000006603) #14 TAP2 (ENSPLOG00000006623) #15 PSMB8 (ENSPLOG00000006662) #16 TAP1 (ENSPLOG00000006688) #17 PSMB9 (ENSPLOG00000006713) #18 ENSPLOG00000006735 HLA-DMB (ENSPLOG00000006753) #19 HLA-DMA (ENSPLOG00000006786) #20 BRD2 (ENSPLOG00000006871) #22 HLA-DOA (ENSPLOG00000006926) #23 HLA-DPA1 (ENSPLOG00000006949) #24 ENSPLOG00000007166 #25 COL11A2 (ENSPLOG00000007928) #26 RXRB (ENSPLOG00000009094) #27 SLC39A7 (ENSPLOG00000009206) #28 HSD17B8 (ENSPLOG00000009241) #29 RING1 (ENSPLOG00000009313) #30 VPS52 (ENSPLOG00000009344) #31 RPS18 (ENSPLOG00000009471) #32 B3GALT4 (ENSPLOG00000009525) #33 WDR46 (ENSPLOG00000009542) #34 PFDN6 (ENSPLOG00000009614) #35 RGL2 (ENSPLOG00000009682) #36 TAPBP (ENSPLOG00000009777) #37 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT00530000064839 ENSGT00940000162079.d ENSGT00940000164957 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.c.a ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Equus ANCESTRAL SPECIES 10 ENSGT00940000155371.n.g.a ENSGT00940000161821.c.a ENSGT00940000154723.b.z.a ENSGT00940000161821.c.b ENSGT00940000154723.b.y ENSGT00940000155371.n.h ENSGT00940000155371.n.g.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00860000136081 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Donkey MODERN SPECIES 28 ENSEASG00005003380 HLA-DQB1 (ENSEASG00005012362) ENSEASG00005031301 ENSEASG00005020693 ENSEASG00005014836 ENSEASG00005033717 #14 ENSEASG00005017377 ENSEASG00005020739 #14 TAP2 (ENSEASG00005020743) #15 PSMB8 (ENSEASG00005020748) #16 TAP1 (ENSEASG00005020750) #17 PSMB9 (ENSEASG00005020754) #18 HLA-DMB (ENSEASG00005020759) #19 HLA-DMA (ENSEASG00005020764) #20 ENSEASG00005032605 #21 BRD2 (ENSEASG00005020770) #22 HLA-DOA (ENSEASG00005020773) #23 COL11A2 (ENSEASG00005030115) #26 RXRB (ENSEASG00005020792) #27 SLC39A7 (ENSEASG00005020798) #28 RING1 (ENSEASG00005020805) #30 VPS52 (ENSEASG00005020809) #31 RPS18 (ENSEASG00005020817) #32 B3GALT4 (ENSEASG00005035058) #33 WDR46 (ENSEASG00005020823) #34 PFDN6 (ENSEASG00005035417) #35 RGL2 (ENSEASG00005020835) #36 ZBTB22 (ENSEASG00005020850) DAXX (ENSEASG00005020852) SMIM40 (ENSEASG00005020856) KIFC1 (ENSEASG00005020860) Horse DUPLICATION Horse MODERN SPECIES 13 FAM32A (ENSECAG00000017554) HSH2D (ENSECAG00000016757) TPM4 (ENSECAG00000022254) RAB8A (ENSECAG00000053880) CYP4F127P (ENSECAG00000019543) ENSECAG00000058777 ENSECAG00000046973 CYP4F119 (ENSECAG00000019949) ENSECAG00000034511 ENSECAG00000046401 CYP4F22 (ENSECAG00000012358) RASAL3 (ENSECAG00000009236) WIZ (ENSECAG00000008043) AKAP8L (ENSECAG00000023532) AKAP8 (ENSECAG00000015084) BRD4 (ENSECAG00000030438) #22 EPHX3 (ENSECAG00000018245) ENSECAG00000037674 NOTCH3 (ENSECAG00000021331) ENSECAG00000054944 ENSECAG00000058722 ILVBL (ENSECAG00000017231) SYDE1 (ENSECAG00000016064) OR1I5 (ENSECAG00000004718) CASP14 (ENSECAG00000012619) CCDC105 (ENSECAG00000008463) SLC1A6 (ENSECAG00000018959) OR7A188 (ENSECAG00000037266) ENSECAG00000047702 ENSECAG00000056254 OR5T40 (ENSECAG00000030841) Horse MODERN SPECIES 12 ENSECAG00000022072 Eqca-DQA1 (ENSECAG00000024259) ENSECAG00000017143 ENSECAG00000009142 ENSECAG00000052533 ENSECAG00000020358 ENSECAG00000012933 HLA-DOB (ENSECAG00000020976) #14 TAP2 (ENSECAG00000007152) #15 PSMB9 (ENSECAG00000016898) #18 PSMB8 (ENSECAG00000018887) #16 TAP1 (ENSECAG00000022610) #17 HLA-DMB (ENSECAG00000021796) #19 HLA-DMA (ENSECAG00000003669) #20 ENSECAG00000042051 #21 BRD2 (ENSECAG00000012089) #22 HLA-DOA (ENSECAG00000006603) #23 COL11A2 (ENSECAG00000029028) #26 RXRB (ENSECAG00000023041) #27 SLC39A7 (ENSECAG00000004794) #28 HSD17B8 (ENSECAG00000058465) #29 RING1 (ENSECAG00000013736) #30 VPS52 (ENSECAG00000019702) #31 B3GALT4 (ENSECAG00000052593) #33 WDR46 (ENSECAG00000016548) #34 PFDN6 (ENSECAG00000055205) #35 RGL2 (ENSECAG00000000906) #36 TAPBP (ENSECAG00000015448) #37 ZBTB22 (ENSECAG00000019536) DAXX (ENSECAG00000021055) KIFC1 (ENSECAG00000024196) Chiroptera ANCESTRAL SPECIES 3 ENSGT00940000162079.d ENSGT00940000164957 ENSGT00940000162484.f ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162892 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Megabat MODERN SPECIES 3232 HLA-DMB (ENSPVAG00000012007) #19 HLA-DMA (ENSPVAG00000012008) #20 BRD2 (ENSPVAG00000012010) #22 HLA-DOA (ENSPVAG00000012013) #23 Microchiroptera ANCESTRAL SPECIES 4 ENSGT00940000162079.d ENSGT00940000164957 ENSGT00940000162484.f ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161821.d ENSGT00940000154723.b ENSGT00940000162892 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Greater horseshoe bat MODERN SPECIES 21 ENSRFEG00010010130 HLA-DRA (ENSRFEG00010010177) ENSRFEG00010010222 ENSRFEG00010010287 HLA-DQB2 (ENSRFEG00010010410) ENSRFEG00010010549 ENSRFEG00010010765 ENSRFEG00010012374 ENSRFEG00010012490 HLA-DOB (ENSRFEG00010012534) #14 TAP2 (ENSRFEG00010012594) #15 PSMB8 (ENSRFEG00010012709) #16 TAP1 (ENSRFEG00010012779) #17 PSMB9 (ENSRFEG00010012800) #18 ENSRFEG00010012948 #20 BRD2 (ENSRFEG00010013276) #22 HLA-DOA (ENSRFEG00010013359) #23 HLA-DPA1 (ENSRFEG00010013424) #24 HLA-DPB1 (ENSRFEG00010013529) #25 COL11A2 (ENSRFEG00010013940) #26 RXRB (ENSRFEG00010014125) #27 SLC39A7 (ENSRFEG00010014223) #28 HSD17B8 (ENSRFEG00010014277) #29 RING1 (ENSRFEG00010014424) #30 VPS52 (ENSRFEG00010014510) #31 ENSRFEG00010014573 #32 B3GALT4 (ENSRFEG00010014737) #33 WDR46 (ENSRFEG00010014756) #34 ENSRFEG00010014998 #35 RGL2 (ENSRFEG00010015178) #36 TAPBP (ENSRFEG00010015262) #37 Microbat DUPLICATION Microbat MODERN SPECIES 1217 RAB8A (ENSMLUG00000006982) ENSMLUG00000016177 ENSMLUG00000009960 ENSMLUG00000017518 ENSMLUG00000029631 ENSMLUG00000026342 ENSMLUG00000028047 ENSMLUG00000023349 CYP4F8 (ENSMLUG00000024967) CYP4F22 (ENSMLUG00000005489) PGLYRP2 (ENSMLUG00000005486) RASAL3 (ENSMLUG00000027885) WIZ (ENSMLUG00000005482) AKAP8L (ENSMLUG00000005469) ENSMLUG00000027375 ENSMLUG00000004852 #22 EPHX3 (ENSMLUG00000029171) NOTCH3 (ENSMLUG00000004827) ILVBL (ENSMLUG00000004813) SYDE1 (ENSMLUG00000004803) OR1I1 (ENSMLUG00000015963) CASP14 (ENSMLUG00000025660) CCDC105 (ENSMLUG00000014791) SLC1A6 (ENSMLUG00000009325) OR7C2 (ENSMLUG00000009312) ENSMLUG00000025485 ENSMLUG00000029596 ENSMLUG00000029177 ENSMLUG00000025146 ENSMLUG00000027873 Microbat MODERN SPECIES 697 ENSMLUG00000009919 #22 Atlantogenata ANCESTRAL SPECIES 3 ENSGT00940000162484 ENSGT00940000160997 ENSGT00940000155371 ENSGT00940000154993 ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Xenarthra ANCESTRAL SPECIES 66 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000161735 ENSGT00390000017030.b.b ENSGT00950000183180.a.b Armadillo MODERN SPECIES 4056 TAP2 (ENSDNOG00000034243) #15 PSMB8 (ENSDNOG00000045248) #16 TAP1 (ENSDNOG00000024030) #17 PSMB9 (ENSDNOG00000035353) #18 HLA-DMB (ENSDNOG00000045752) #19 HLA-DMA (ENSDNOG00000002005) #20 BRD2 (ENSDNOG00000006186) #22 HLA-DOA (ENSDNOG00000030617) #23 HLA-DPA1 (ENSDNOG00000043328) #24 ENSDNOG00000045287 #25 ENSDNOG00000037384 #25 COL11A2 (ENSDNOG00000047004) #26 RXRB (ENSDNOG00000015431) #27 SLC39A7 (ENSDNOG00000015430) #28 RING1 (ENSDNOG00000019606) #30 ENSDNOG00000041084 VPS52 (ENSDNOG00000012056) #31 RPS18 (ENSDNOG00000012084) #32 WDR46 (ENSDNOG00000011191) #34 RGL2 (ENSDNOG00000011897) #36 ENSDNOG00000049289 KIFC1 (ENSDNOG00000016407) Sloth MODERN SPECIES 7529 BRD2 (ENSCHOG00000006027) #22 Afrotheria ANCESTRAL SPECIES 83 ENSGT00940000162484 ENSGT00940000160997.m ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Afrotheria_a ANCESTRAL SPECIES 84 ENSGT00940000162484 ENSGT00940000160997.m ENSGT00940000161821 ENSGT00940000154723.b ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hyrax MODERN SPECIES 8416 BRD2 (ENSPCAG00000009077) #22 HLA-DOA (ENSPCAG00000009144) #23 Elephant DUPLICATION Elephant MODERN SPECIES 270 ENSLAFG00000030136 ENSLAFG00000027993 ENSLAFG00000031874 ENSLAFG00000026585 ENSLAFG00000030034 ENSLAFG00000003300 ENSLAFG00000029003 ENSLAFG00000029960 ENSLAFG00000030083 CYP4F22 (ENSLAFG00000023092) ENSLAFG00000008772 RASAL3 (ENSLAFG00000020948) WIZ (ENSLAFG00000004604) AKAP8L (ENSLAFG00000004599) AKAP8 (ENSLAFG00000026120) ENSLAFG00000030134 #22 EPHX3 (ENSLAFG00000000695) NOTCH3 (ENSLAFG00000031040) ENSLAFG00000031179 ENSLAFG00000025846 ILVBL (ENSLAFG00000003259) ENSLAFG00000030501 OR1I1 (ENSLAFG00000032391) CASP14 (ENSLAFG00000031913) CCDC105 (ENSLAFG00000000999) SLC1A6 (ENSLAFG00000011311) ENSLAFG00000032506 ENSLAFG00000002220 ENSLAFG00000027481 ENSLAFG00000026701 ENSLAFG00000029250 Elephant MODERN SPECIES 14 BTNL2 (ENSLAFG00000001025) ENSLAFG00000001026 ENSLAFG00000031292 ENSLAFG00000018482 ENSLAFG00000030016 ENSLAFG00000029261 HLA-DOB (ENSLAFG00000004052) #14 TAP2 (ENSLAFG00000028298) #15 PSMB8 (ENSLAFG00000003213) #16 TAP1 (ENSLAFG00000003214) #17 PSMB9 (ENSLAFG00000025736) #18 HLA-DMB (ENSLAFG00000004768) #19 HLA-DMA (ENSLAFG00000005738) #20 BRD2 (ENSLAFG00000016104) #22 HLA-DOA (ENSLAFG00000014863) #23 ENSLAFG00000029575 #25 COL11A2 (ENSLAFG00000009548) #26 RXRB (ENSLAFG00000002141) #27 SLC39A7 (ENSLAFG00000002138) #28 HSD17B8 (ENSLAFG00000030087) #29 RING1 (ENSLAFG00000021706) #30 VPS52 (ENSLAFG00000004472) #31 ENSLAFG00000032173 ##32 B3GALT4 (ENSLAFG00000025898) #33 WDR46 (ENSLAFG00000012958) #34 PFDN6 (ENSLAFG00000012967) #35 RGL2 (ENSLAFG00000022913) #36 TAPBP (ENSLAFG00000032520) #37 ZBTB22 (ENSLAFG00000018510) Tenrec DUPLICATION Tenrec MODERN SPECIES 797 ENSETEG00000007267 #22 EPHX3 (ENSETEG00000007262) Tenrec MODERN SPECIES 8430 BRD2 (ENSETEG00000008209) #22 Marsupialia ANCESTRAL SPECIES 2 ENSGT00940000160997 ENSGT00940000154723.a.a ENSGT00940000161847.k ENSGT00950000183127.b.c.a ENSGT00980000198488.n.y.b.a ENSGT00940000160499.l #15 ENSGT01100000263562.b.a.a.c.b ENSGT00940000160499.k #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00980000198488.n.y.a.a ENSGT00980000198488.n.y.b.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Marsupialia_b ANCESTRAL SPECIES 1 ENSGT00920000149187 ENSGT00940000162382 ENSGT00940000155779.a.b ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000162079.g.b ENSGT00950000183127.b.c.b ENSGT00940000162498 #24 ENSGT00940000164042.b ENSGT00940000160997 ENSGT00980000198488.n.y.b.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Tasmanian devil MODERN SPECIES 3 CYP21A2 (ENSSHAG00000009476) TNXB (ENSSHAG00000009524) ATF6B (ENSSHAG00000010010) FKBPL (ENSSHAG00000021705) ENSSHAG00000024676 PPT2 (ENSSHAG00000010290) EGFL8 (ENSSHAG00000010328) AGPAT1 (ENSSHAG00000010364) RNF5 (ENSSHAG00000030853) AGER (ENSSHAG00000022656) PBX2 (ENSSHAG00000030132) ENSSHAG00000003189 ENSSHAG00000001982 HLA-DMA (ENSSHAG00000003851) #20 HLA-DMB (ENSSHAG00000003762) #19 BRD2 (ENSSHAG00000001150) #22 COL11A2 (ENSSHAG00000005537) #26 RXRB (ENSSHAG00000006089) #27 ENSSHAG00000022792 #29 ENSSHAG00000030383 ##32 ENSSHAG00000023999 #35 RGL2 (ENSSHAG00000007263) #36 TAPBP (ENSSHAG00000025584) #37 ZBTB22 (ENSSHAG00000007426) DAXX (ENSSHAG00000007459) PHF1 (ENSSHAG00000021541) ENSSHAG00000001198 CUTA (ENSSHAG00000002227) SYNGAP1 (ENSSHAG00000002507) ZBTB9 (ENSSHAG00000027893) BAK1 (ENSSHAG00000028586) Diprotodontia ANCESTRAL SPECIES 44 ENSGT00980000198488.n.y.b.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Wallaby MODERN SPECIES 10052 ENSMEUG00000015257 #22 Diprotodontia_a ANCESTRAL SPECIES 101 ENSGT00980000198488.n.y.b.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT01100000263519.A.b.a.b koala DUPLICATION koala MODERN SPECIES 190 ENSPCIG00000035109 ENSPCIG00000034279 ENSPCIG00000004796 ENSPCIG00000004785 ENSPCIG00000032799 ENSPCIG00000005143 ENSPCIG00000024857 CYP4F22 (ENSPCIG00000004755) ENSPCIG00000004728 ENSPCIG00000004722 RASAL3 (ENSPCIG00000004702) ENSPCIG00000004692 ENSPCIG00000004684 AKAP8L (ENSPCIG00000004037) AKAP8 (ENSPCIG00000004006) ENSPCIG00000003344 #22 ENSPCIG00000034860 EPHX3 (ENSPCIG00000003286) NOTCH3 (ENSPCIG00000026508) ENSPCIG00000026509 ILVBL (ENSPCIG00000003271) SYDE1 (ENSPCIG00000003261) OR1I1 (ENSPCIG00000003241) CASP14 (ENSPCIG00000003224) ENSPCIG00000003213 CCDC105 (ENSPCIG00000003198) SLC1A6 (ENSPCIG00000003178) ENSPCIG00000011974 ENSPCIG00000031404 ENSPCIG00000032437 ENSPCIG00000027489 koala MODERN SPECIES 254 ENSPCIG00000008629 #17 ENSPCIG00000009007 #15 ENSPCIG00000001719 ENSPCIG00000001804 ENSPCIG00000001868 #16 ENSPCIG00000005091 #17 ENSPCIG00000034822 ENSPCIG00000001943 ENSPCIG00000001956 #15 ENSPCIG00000008486 #16 ENSPCIG00000034298 #17 PSMB9 (ENSPCIG00000022552) #18 ENSPCIG00000036230 Phci-DMB (ENSPCIG00000019944) #19 HLA-DMA (ENSPCIG00000001972) #20 BRD2 (ENSPCIG00000002017) #22 COL11A2 (ENSPCIG00000031838) #26 RXRB (ENSPCIG00000002153) #27 ENSPCIG00000002180 HSD17B8 (ENSPCIG00000002203) #29 RING1 (ENSPCIG00000002578) #30 ENSPCIG00000036920 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 580 ENSVURG00010024921 ENSVURG00010024920 ENSVURG00010024919 ENSVURG00010024918 ENSVURG00010024917 ENSVURG00010024916 ENSVURG00010024909 ENSVURG00010024897 CYP4F22 (ENSVURG00010024894) PGLYRP2 (ENSVURG00010024892) RASAL3 (ENSVURG00010024888) WIZ (ENSVURG00010024884) AKAP8L (ENSVURG00010024874) AKAP8 (ENSVURG00010024869) ENSVURG00010024866 #22 ENSVURG00010024864 EPHX3 (ENSVURG00010024863) ENSVURG00010024861 NOTCH3 (ENSVURG00010024859) ENSVURG00010024857 ILVBL (ENSVURG00010024855) SYDE1 (ENSVURG00010024852) OR1I1 (ENSVURG00010024850) CASP14 (ENSVURG00010024849) ENSVURG00010024848 SLC1A6 (ENSVURG00010024846) ENSVURG00010024843 ENSVURG00010024842 ENSVURG00010024841 ENSVURG00010024840 Common wonbat MODERN SPECIES 1047 ENSVURG00010006216 #15 ENSVURG00010006448 ENSVURG00010006462 #15 ENSVURG00010006484 ENSVURG00010006738 PSMB8 (ENSVURG00010012199) #16 ENSVURG00010012252 #17 ENSVURG00010012508 #18 ENSVURG00010012584 ENSVURG00010014250 OSCAR (ENSVURG00010014253) ENSVURG00010014277 #15 ENSVURG00010014320 #17 HLA-DMB (ENSVURG00010014847) #19 HLA-DMA (ENSVURG00010014861) #20 BRD2 (ENSVURG00010014869) #22 ENSVURG00010014883 #26 RXRB (ENSVURG00010014890) #27 ENSVURG00010014948 RING1 (ENSVURG00010014982) #30 VPS52 (ENSVURG00010015001) #31 RPS18 (ENSVURG00010015031) ##32 B3GALT4 (ENSVURG00010015041) #33 WDR46 (ENSVURG00010015047) #34 PFDN6 (ENSVURG00010015063) #35 RGL2 (ENSVURG00010015079) #36 ENSVURG00010015107 #37 ZBTB22 (ENSVURG00010015135) DAXX (ENSVURG00010015143) SMIM40 (ENSVURG00010015158) ENSVURG00010015167 Opossum DUPLICATION Opossum MODERN SPECIES 2 ENSMODG00000014822 ENSMODG00000023817 ENSMODG00000039842 ENSMODG00000047513 ENSMODG00000029440 CYP4F8 (ENSMODG00000014754) ENSMODG00000014717 ENSMODG00000023822 ENSMODG00000014674 ENSMODG00000014425 CYP4F22 (ENSMODG00000014622) PGLYRP2 (ENSMODG00000014610) WIZ (ENSMODG00000014589) AKAP8L (ENSMODG00000014581) AKAP8 (ENSMODG00000014573) ENSMODG00000040284 #22 ENSMODG00000014558 EPHX3 (ENSMODG00000041517) NOTCH3 (ENSMODG00000014540) ENSMODG00000050252 ILVBL (ENSMODG00000014519) SYDE1 (ENSMODG00000014508) ENSMODG00000048274 OR1I1 (ENSMODG00000014497) CASP14 (ENSMODG00000039253) ENSMODG00000014485 SLC1A6 (ENSMODG00000014481) ENSMODG00000014469 ENSMODG00000036910 ENSMODG00000044017 ENSMODG00000039698 Opossum MODERN SPECIES 1 OSCAR (ENSMODG00000010599) ENSMODG00000043833 #15 MHC-I (ENSMODG00000042965) ENSMODG00000047889 ENSMODG00000010560 #15 ENSMODG00000044001 ENSMODG00000038708 PSMB8 (ENSMODG00000014366) #16 TAP1 (ENSMODG00000014352) #17 PSMB9 (ENSMODG00000046870) #18 ENSMODG00000050241 MODO-UK (ENSMODG00000014336) ENSMODG00000039629 HLA-DMB (ENSMODG00000014310) #19 ENSMODG00000029544 #20 BRD2 (ENSMODG00000014295) #22 RXRB (ENSMODG00000014249) #27 ENSMODG00000014239 HSD17B8 (ENSMODG00000014232) #29 RING1 (ENSMODG00000014169) #30 ENSMODG00000044597 ENSMODG00000029559 RPS18 (ENSMODG00000014210) #32 B3GALT4 (ENSMODG00000023738) #33 WDR46 (ENSMODG00000014202) #34 PFDN6 (ENSMODG00000014191) #35 RGL2 (ENSMODG00000014185) #36 TAPBP (ENSMODG00000014159) #37 ZBTB22 (ENSMODG00000014152) DAXX (ENSMODG00000014146) SMIM40 (ENSMODG00000041725) Platypus MODERN SPECIES 86 ENSOANG00000048207 ORNANAV1R3015 (ENSOANG00000007358) ENSOANG00000009112 ENSOANG00000046016 ENSOANG00000015643 ENSOANG00000037190 ENSOANG00000005224 TAP2 (ENSOANG00000004283) #15 PSMB8 (ENSOANG00000014541) #16 TAP1 (ENSOANG00000021021) #17 PSMB9 (ENSOANG00000041248) #18 ENSOANG00000044768 ENSOANG00000003398 ENSOANG00000046093 #19 ENSOANG00000045669 #20 BRD2 (ENSOANG00000040477) #22 ENSOANG00000043668 ENSOANG00000042230 ENSOANG00000036542 #37 RGL2 (ENSOANG00000047778) #36 PFDN6 (ENSOANG00000046144) #35 ENSOANG00000049916 #34 B3GALT4 (ENSOANG00000043293) #33 RPS18 (ENSOANG00000036297) ##32 Sauria ANCESTRAL SPECIES 7 ENSGT00940000159250 ENSGT00940000154043.B ENSGT00530000063777.b ENSGT00940000158611 ENSGT01060000248660 ENSGT00940000158258 ENSGT00550000074822 ENSGT00550000075011 ENSGT00530000063861.b.b ENSGT00940000154549.a ENSGT00940000177865.c ENSGT01100000263475.d.a ENSGT00980000198488.n ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a ENSGT00940000156233 ENSGT00940000164497 ENSGT00940000154382.a.b ENSGT00390000008285 ENSGT00390000018446 ENSGT00390000017965 ENSGT00940000156166.a ENSGT00940000153846.a.a ENSGT00950000183210.d.a ENSGT00390000006452.b.b ENSGT00950000183180.b ENSGT00940000155468 ENSGT00940000153190.A ENSGT00940000155412.a.b Archelosauria ANCESTRAL SPECIES 53 ENSGT01100000263517.b.d ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263517.a.a ENSGT01100000263475.d.a ENSGT00980000198488.n ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00950000183127.b.g ENSGT00940000155371 ENSGT00940000160997.a.a ENSGT00940000161847 ENSGT00950000183127.b.h.a.a ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000009448 ENSGT00940000160991 ENSGT00940000159200 #37 Archosauria ANCESTRAL SPECIES 88 ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT01100000263475.d.a ENSGT00980000198488.n ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Aves ANCESTRAL SPECIES 83 ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT01100000263475.d.a.a.a ENSGT00980000198488.n ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Neognathae ANCESTRAL SPECIES 56 ENSGT01090000260479 ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT01100000263517.b.d ENSGT00940000160499 #15 ENSGT00940000159023 #17 ENSGT00980000198488.n ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Galloanserae ANCESTRAL SPECIES 74 ENSGT00950000183127.b.g ENSGT00980000198488.n ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Anatidae DUPLICATION Anatidae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.c #22 Pink-footed goose MODERN SPECIES 511 ENSABRG00000021439 ENSABRG00000021435 SLC44A2 (ENSABRG00000021426) ENSABRG00000021422 ENSABRG00000021421 ENSABRG00000021418 #22 Anatidae DUPLICATION Anatidae ANCESTRAL SPECIES 215 ENSGT00940000153385.b.a.b.d.a #22 ENSGT00940000161847 Pink-footed goose MODERN SPECIES 608 BRD2 (ENSABRG00000020806) #22 ENSABRG00000020809 ENSABRG00000020818 #26 Duck MODERN SPECIES 3685 ENSAPLG00000006561 #22 Anatidae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.d.b #22 Duck MODERN SPECIES 3791 ENSAPLG00000019562 #22 Phasianidae ANCESTRAL SPECIES 45 ENSGT01100000263475.d.a.b ENSGT01100000263475.d.a.a.a.a ENSGT00950000182966.C.a ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT00940000160499 #15 ENSGT00940000159023 #17 ENSGT00980000198488.n.g ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 Japanese quail DUPLICATION Japanese quail MODERN SPECIES 49 ENSCJPG00005001963 CHCHD5 (ENSCJPG00005001953) ATP13A1 (ENSCJPG00005001928) ENSCJPG00005001916 ENSCJPG00005001904 PBX4 (ENSCJPG00005001827) LPAR2 (ENSCJPG00005001815) GMIP (ENSCJPG00005001809) NXNL1 (ENSCJPG00005001803) SLC27A1 (ENSCJPG00005001797) PGLS (ENSCJPG00005001792) ENSCJPG00005001658 #22 Japanese quail MODERN SPECIES 7 ENSCJPG00005015693 ENSCJPG00005015694 LTB4R (ENSCJPG00005015695) ENSCJPG00005015696 CYP21A2 (ENSCJPG00005015697) ENSCJPG00005015698 ENSCJPG00005015699 ENSCJPG00005015700 ENSCJPG00005015701 TAP1 (ENSCJPG00005015702) #17 TAP2 (ENSCJPG00005015703) #15 ENSCJPG00005015704 ENSCJPG00005015705 ENSCJPG00005015707 #19 BRD2 (ENSCJPG00005015709) #22 ENSCJPG00005015710 ENSCJPG00005015724 #37 ENSCJPG00005015727 ENSCJPG00005015728 ENSCJPG00005015730 ENSCJPG00005015735 ENSCJPG00005015738 ENSCJPG00005015739 ENSCJPG00005015740 ENSCJPG00005015741 ENSCJPG00005015742 ENSCJPG00005015743 ENSCJPG00005015745 ENSCJPG00005015746 RACK1 (ENSCJPG00005015748) Phasianidae_b ANCESTRAL SPECIES 54 ENSGT00940000159023.a #17 ENSGT00940000160499 #15 ENSGT00980000198488.n.g ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000155739 ENSGT00940000158338 ENSGT00940000155565.e.b ENSGT00950000182966.C.a ENSGT01100000263475.d.a.a.a.a ENSGT01100000263475.d.a.b Chicken DUPLICATION Chicken MODERN SPECIES 23 S1PR2 (ENSGALG00010002908) ELOF1 (ENSGALG00010003251) ACP5 (ENSGALG00010003260) NFIX (ENSGALG00010003273) ENSGALG00010003279 GADD45GIP1 (ENSGALG00010003292) RAD23A (ENSGALG00010003299) CALR (ENSGALG00010003305) FARSA (ENSGALG00010003352) SYCE2 (ENSGALG00010003374) GCDH (ENSGALG00010003403) GMIP (ENSGALG00010003439) NXNL1 (ENSGALG00010002913) SLC27A1 (ENSGALG00010002914) PGLS (ENSGALG00010002917) ENSGALG00010002919 #22 ENSGALG00010002985 Chicken MODERN SPECIES 7 ENSGALG00010001604 CD1C (ENSGALG00010003250) CD1B (ENSGALG00010003836) LTB4R (ENSGALG00010003212) ENSGALG00010003205 CYP21A1 (ENSGALG00010003186) CENPA (ENSGALG00010003178) C4 (ENSGALG00010003170) BF2 (ENSGALG00010003817) TAP2 (ENSGALG00010003159) #15 TAP1 (ENSGALG00010003131) #17 BF1 (ENSGALG00010003110) DMB2 (ENSGALG00010003830) #19 DMB1 (ENSGALG00010003825) #19 DMA (ENSGALG00010003090) #20 BRD2 (ENSGALG00010003068) #22 BLB2 (ENSGALG00010003022) TAPBP (ENSGALG00010003019) #37 BLB1 (ENSGALG00010002991) BLEC2 (ENSGALG00010002960) BLEC1 (ENSGALG00010002955) BG1 (ENSGALG00010002940) ENSGALG00010002881 ENSGALG00010002866 RACK1 (ENSGALG00010002855) TRIM41 (ENSGALG00010002825) TRIM27.1 (ENSGALG00010002810) TRIM39.1 (ENSGALG00010002798) TRIM27.2 (ENSGALG00010002784) TRIM39.2 (ENSGALG00010002768) SLURP1 (ENSGALG00010002739) Turkey DUPLICATION Turkey MODERN SPECIES 1010 ENSMGAG00000008498 #22 Turkey MODERN SPECIES 1296 ENSMGAG00000007899 #22 Neognathae_b DUPLICATION Neognathae_b DUPLICATION Neognathae_b ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeriformes ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeroidea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Common canary DUPLICATION Common canary MODERN SPECIES 264 ENSSCAG00000006885 #22 ENSSCAG00000006882 #22 Common canary MODERN SPECIES 264 ENSSCAG00000006885 #22 ENSSCAG00000006882 #22 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 66 ENSTGUG00000027443 #22 ENSTGUG00000024395 #22 Zebra finch MODERN SPECIES 66 ENSTGUG00000027443 #22 ENSTGUG00000024395 #22 Neognathae_b ANCESTRAL SPECIES 102 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000153385.b.a.b.k.b #22 Neognathae_c ANCESTRAL SPECIES 67 ENSGT00940000163974 ENSGT00390000010806 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000153385.b.a.b.k.b #22 ENSGT00940000160997.b ENSGT00950000183127.b.g.d.a Golden eagle MODERN SPECIES 55 DDR1 (ENSACCG00020015301) ENSACCG00020015333 ENSACCG00020015360 ENSACCG00020015378 ENSACCG00020015738 SH3BP5L (ENSACCG00020016019) ENSACCG00020016031 ENSACCG00020016038 ENSACCG00020016047 ENSACCG00020016062 GABBR1 (ENSACCG00020016080) RNF225 (ENSACCG00020016108) RPS5 (ENSACCG00020016126) ENSACCG00020016176 #19 ENSACCG00020016198 #19 BRD2 (ENSACCG00020016208) #22 ENSACCG00020016250 ENSACCG00020016292 ENSACCG00020016313 Passeriformes ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Passeroidea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Zebra finch MODERN SPECIES 99 ENSTGUG00000026921 #28 ENSTGUG00000024504 ENSTGUG00000019166 ENSTGUG00000027041 ENSTGUG00000029470 ENSTGUG00000027795 ENSTGUG00000023468 ENSTGUG00000023450 ENSTGUG00000022923 #22 ENSTGUG00000019830 #22 ENSTGUG00000021345 ENSTGUG00000025871 ENSTGUG00000026581 ENSTGUG00000014649 ENSTGUG00000024543 ENSTGUG00000028050 ENSTGUG00000021420 ENSTGUG00000019551 ENSTGUG00000021774 ENSTGUG00000023669 #28 ENSTGUG00000020363 #27 ENSTGUG00000020800 #30 ENSTGUG00000020633 #31 RPS18 (ENSTGUG00000025738) #32 Neognathae_b ANCESTRAL SPECIES 100 ENSGT00940000153385.b.a.b.l #22 ENSGT00950000183127.b.g.d.a ENSGT00940000155371 Neognathae_c ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Kakapo MODERN SPECIES 73 EPOR (ENSSHBG00005017367) ECSIT (ENSSHBG00005017349) CNN1 (ENSSHBG00005017346) ELOF1 (ENSSHBG00005017342) ACP5 (ENSSHBG00005017284) NFIX (ENSSHBG00005017275) ENSSHBG00005017272 ENSSHBG00005017270 ENSSHBG00005017267 CALR (ENSSHBG00005017266) ENSSHBG00005017257 ENSSHBG00005017252 WIZ (ENSSHBG00005017243) AKAP8L (ENSSHBG00005017237) AKAP8 (ENSSHBG00005017232) ENSSHBG00005017222 #22 AP1M2 (ENSSHBG00005017216) ENSSHBG00005017213 ENSSHBG00005017208 ENSSHBG00005017200 ILF3 (ENSSHBG00005017188) ENSSHBG00005017181 QTRT1 (ENSSHBG00005017179) DNM2 (ENSSHBG00005017137) TYK2 (ENSSHBG00005017119) RAVER1 (ENSSHBG00005017112) FDX2 (ENSSHBG00005017107) ENSSHBG00005017102 AURKB (ENSSHBG00005017096) PRKCSH (ENSSHBG00005017090) COLGALT1 (ENSSHBG00005017082) Passeriformes ANCESTRAL SPECIES 136 ENSGT00940000153385.b.a.b.l #22 ENSGT00950000183127.b.g.d.a ENSGT00940000155371 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Passeroidea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Zebra finch MODERN SPECIES 99 ENSTGUG00000026921 #28 ENSTGUG00000024504 ENSTGUG00000019166 ENSTGUG00000027041 ENSTGUG00000029470 ENSTGUG00000027795 ENSTGUG00000023468 ENSTGUG00000023450 ENSTGUG00000022923 #22 ENSTGUG00000019830 #22 ENSTGUG00000021345 ENSTGUG00000025871 ENSTGUG00000026581 ENSTGUG00000014649 ENSTGUG00000024543 ENSTGUG00000028050 ENSTGUG00000021420 ENSTGUG00000019551 ENSTGUG00000021774 ENSTGUG00000023669 #28 ENSTGUG00000020363 #27 ENSTGUG00000020800 #30 ENSTGUG00000020633 #31 RPS18 (ENSTGUG00000025738) #32 ENSTGUG00000024100 #34 African ostrich DUPLICATION African ostrich MODERN SPECIES 608 RASAL3 (ENSSCUG00000009490) ENSSCUG00000009479 AKAP8L (ENSSCUG00000009472) AKAP8 (ENSSCUG00000009464) ENSSCUG00000009460 #22 ENSSCUG00000009457 ENSSCUG00000009450 African ostrich MODERN SPECIES 1055 ENSSCUG00000019012 ENSSCUG00000019013 ENSSCUG00000019014 ENSSCUG00000019015 ENSSCUG00000019016 ENSSCUG00000019017 BRD2 (ENSSCUG00000019018) #22 HLA-DRA (ENSSCUG00000019019) Cryptodira ANCESTRAL SPECIES 65 ENSGT01100000263517.b.d ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263517.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00950000183127.b.h.a.a ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00940000161798 #33 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Testudinoidea ANCESTRAL SPECIES 54 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847.c.a.a ENSGT00950000183127.b.h.a.a.a.a ENSGT00950000183127.b.h.a.a.b ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00940000161798 #33 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES 218 ENSGT00940000160381.c #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b.o #22 Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 969 ENSTMTG00000013710 #22 Three-toed box turtle MODERN SPECIES 1146 ENSTMTG00000017990 #22 painted turtle MODERN SPECIES 1219 ENSCPBG00000006733 ENSCPBG00000008241 #15 PSMB8 (ENSCPBG00000008280) #16 ENSCPBG00000008292 #17 ENSCPBG00000008306 #18 ENSCPBG00000008318 #17 ENSCPBG00000008324 #15 ENSCPBG00000008354 HLA-DMB (ENSCPBG00000008368) #19 HLA-DMA (ENSCPBG00000008372) #20 BRD2 (ENSCPBG00000008380) #22 Emydidae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.p #22 Three-toed box turtle MODERN SPECIES 3192 ENSTMTG00000014495 #22 Testudinidae ANCESTRAL SPECIES 71 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847.c.a.a ENSGT00950000183127.b.h.a.a.a.a ENSGT00950000183127.b.h.a.a.b ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00940000161798 #33 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Goode s thornscrub tortoise MODERN SPECIES 170 ENSGEVG00005020797 PSMB9 (ENSGEVG00005020791) #18 TAP1 (ENSGEVG00005020786) #17 PSMB8 (ENSGEVG00005020780) #16 TAP2 (ENSGEVG00005020773) #15 ENSGEVG00005020695 ENSGEVG00005020518 ENSGEVG00005020457 ENSGEVG00005020451 ENSGEVG00005020447 ENSGEVG00005020442 ENSGEVG00005020430 ENSGEVG00005020423 ENSGEVG00005020421 #19 HLA-DMA (ENSGEVG00005020420) #20 BRD2 (ENSGEVG00005020418) #22 ENSGEVG00005020408 ENSGEVG00005020389 ENSGEVG00005020378 ENSGEVG00005020372 ENSGEVG00005020366 ENSGEVG00005020362 #26 RXRB (ENSGEVG00005020358) #27 ENSGEVG00005020353 ENSGEVG00005020345 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 497 ENSCABG00000013514 #22 ENSCABG00000013592 ENSCABG00000013594 NOTCH3 (ENSCABG00000013600) ENSCABG00000013621 ENSCABG00000013622 XAB2 (ENSCABG00000013624) PET100 (ENSCABG00000013626) Abingdon island giant tortoise MODERN SPECIES 2003 ENSCABG00000015631 #20 BRD2 (ENSCABG00000015628) #22 ENSCABG00000015626 ENSCABG00000015625 ENSCABG00000015624 UCN3 (ENSCABG00000015623) ENSCABG00000015622 ENSCABG00000015620 ENSCABG00000015619 ENSCABG00000015618 NET1 (ENSCABG00000015617) CALML3 (ENSCABG00000015605) ENSCABG00000015602 ASB13 (ENSCABG00000015601) TASOR2 (ENSCABG00000015600) GDI2 (ENSCABG00000015598) ANKRD16 (ENSCABG00000015596) Lepidosauria ANCESTRAL SPECIES 78 ENSGT00940000159130 ENSGT00950000183036.b ENSGT00940000161507 ENSGT00940000158718 ENSGT00940000161423 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000154549.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a ENSGT00940000156233 ENSGT00940000164497 ENSGT00940000160234 ENSGT00980000198723 ENSGT00950000182975.a.b ENSGT00550000075140 ENSGT00390000016884 ENSGT00940000162025 ENSGT00940000160045 ENSGT00390000016177 ENSGT00940000157017.b ENSGT00940000162906.c.a ENSGT00390000000976 ENSGT00390000018759 tuatara MODERN SPECIES 208 ENSSPUG00000006464 #20 BRD2 (ENSSPUG00000006441) #22 Episquamata ANCESTRAL SPECIES 4 ENSGT00940000156854 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00730000111191 ENSGT00390000005730.a.a.f ENSGT00940000161207 ENSGT00940000170754 ENSGT00940000157510 ENSGT00940000155709 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000154549.b ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a ENSGT00940000156233 ENSGT00940000164497 ENSGT00940000160234 ENSGT00980000198723 ENSGT00950000182975.a.b ENSGT00550000075140 ENSGT00390000016884 ENSGT00940000162025 ENSGT00940000160045 ENSGT00390000016177.a.a ENSGT00940000157017.b ENSGT00390000000976 ENSGT00390000018759 ENSGT00950000182886.a.a.b Toxicofera ANCESTRAL SPECIES 97 ENSGT00940000159897 #18 ENSGT00940000159023 #17 ENSGT00940000157293 #16 ENSGT00940000160499 #15 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a Lizard DUPLICATION Lizard MODERN SPECIES 1667 ENSACAG00000004190 #22 ENSACAG00000044573 #22 ENSACAG00000004292 #35 ENSACAG00000038023 Lizard MODERN SPECIES 1667 ENSACAG00000004190 #22 ENSACAG00000044573 #22 ENSACAG00000004292 #35 ENSACAG00000038023 Elapidae ANCESTRAL SPECIES 118 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a Elapidae_a ANCESTRAL SPECIES 289 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 Acanthophiinae ANCESTRAL SPECIES 272 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 Mainland tiger snake MODERN SPECIES 998 ENSNSUG00000009725 #20 BRD2 (ENSNSUG00000009724) #22 Eastern brown snake MODERN SPECIES 380 RXRB (ENSPTXG00000016800) #27 BRD2 (ENSPTXG00000016797) #22 Blue-lipped sea krait MODERN SPECIES 4206 ENSLLTG00000013032 #20 BRD2 (ENSLLTG00000013038) #22 Indian cobra DUPLICATION Indian cobra MODERN SPECIES 1 NDEL1 (ENSNNAG00000011630) RNF222 (ENSNNAG00000011593) ENSNNAG00000011582 PIRT (ENSNNAG00000011571) ENSNNAG00000011452 ENSNNAG00000011427 ENSNNAG00000011391 ELAC2 (ENSNNAG00000011075) FN3KRP (ENSNNAG00000010997) RAB40B (ENSNNAG00000010973) WDR45B (ENSNNAG00000010923) FOXK2 (ENSNNAG00000010859) WIZ (ENSNNAG00000010721) AKAP8L (ENSNNAG00000010673) AKAP8 (ENSNNAG00000010662) ENSNNAG00000010572 #22 ENSNNAG00000010557 ENSNNAG00000010532 ENSNNAG00000010481 ENSNNAG00000010419 ENSNNAG00000010384 STXBP2 (ENSNNAG00000010318) ENSNNAG00000010285 ENSNNAG00000010233 ENSNNAG00000010221 ENSNNAG00000010194 ENSNNAG00000010159 ENSNNAG00000010093 TRAPPC5 (ENSNNAG00000010073) NDUFB7 (ENSNNAG00000010053) TECR (ENSNNAG00000009971) Indian cobra MODERN SPECIES 1 ENSNNAG00000001342 ENSNNAG00000001323 ENSNNAG00000001305 ENSNNAG00000001279 ENSNNAG00000001259 ENSNNAG00000001252 ENSNNAG00000001229 ENSNNAG00000001217 ENSNNAG00000000800 ENSNNAG00000000714 ENSNNAG00000000697 ENSNNAG00000000471 ENSNNAG00000000357 ENSNNAG00000000325 HLA-DMA (ENSNNAG00000000283) #20 BRD2 (ENSNNAG00000002715) #22 ENSNNAG00000002706 ENSNNAG00000002701 #33 ENSNNAG00000002691 ENSNNAG00000002685 ENSNNAG00000002675 ENSNNAG00000002670 ENSNNAG00000002663 ENSNNAG00000002646 ENSNNAG00000002635 ENSNNAG00000002631 ENSNNAG00000002624 ENSNNAG00000002619 #33 WDR46 (ENSNNAG00000002604) #34 TAPBP (ENSNNAG00000002593) #37 ENSNNAG00000002588 Laterata ANCESTRAL SPECIES 76 ENSGT00390000012691.c.b #32 ENSGT00390000008815 #31 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00950000183127.b.h.b.a.a Argentine black and white tegu MODERN SPECIES 162 ENSSMRG00000003732 #25 ENSSMRG00000003731 ENSSMRG00000003728 #35 ENSSMRG00000003724 ENSSMRG00000003712 #32 VPS52 (ENSSMRG00000003699) #31 ENSSMRG00000003692 ENSSMRG00000003688 #26 RXRB (ENSSMRG00000003679) #27 SLC39A7 (ENSSMRG00000003675) #28 HSD17B8 (ENSSMRG00000003673) #29 RING1 (ENSSMRG00000003666) #30 HLA-DMB (ENSSMRG00000003665) #19 HLA-DMA (ENSSMRG00000003662) #20 BRD2 (ENSSMRG00000003659) #22 ENSSMRG00000003656 ENSSMRG00000003653 ENSSMRG00000003651 ENSSMRG00000003650 ENSSMRG00000003619 ENSSMRG00000003605 #25 ENSSMRG00000003492 ENSSMRG00000003482 ENSSMRG00000003477 ENSSMRG00000003468 ENSSMRG00000003461 ENSSMRG00000003458 ENSSMRG00000003450 ENSSMRG00000003440 ENSSMRG00000003437 Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 10 TMEM238L (ENSPMRG00000015839) ENSPMRG00000015865 PIRT (ENSPMRG00000015871) ENSPMRG00000015879 ENSPMRG00000015887 ENSPMRG00000016255 ELAC2 (ENSPMRG00000017772) ENSPMRG00000018175 FN3KRP (ENSPMRG00000018180) RAB40B (ENSPMRG00000018194) WDR45B (ENSPMRG00000018202) FOXK2 (ENSPMRG00000018210) WIZ (ENSPMRG00000018220) AKAP8L (ENSPMRG00000018229) AKAP8 (ENSPMRG00000018235) ENSPMRG00000018243 #22 ENSPMRG00000018269 ENSPMRG00000018332 ENSPMRG00000018342 NOTCH3 (ENSPMRG00000018759) CAMSAP3 (ENSPMRG00000021035) XAB2 (ENSPMRG00000021050) ENSPMRG00000021066 PCP2 (ENSPMRG00000021070) STXBP2 (ENSPMRG00000021082) ENSPMRG00000021107 ENSPMRG00000021116 ENSPMRG00000021125 ENSPMRG00000021134 TRAPPC5 (ENSPMRG00000021136) ENSPMRG00000021143 Common wall lizard MODERN SPECIES 10 ENSPMRG00000001602 ENSPMRG00000001577 ENSPMRG00000001553 ENSPMRG00000001536 RPS18 (ENSPMRG00000001512) ##32 VPS52 (ENSPMRG00000001358) #31 ENSPMRG00000001300 #26 ENSPMRG00000001290 #26 RXRB (ENSPMRG00000001268) #27 SLC39A7 (ENSPMRG00000001206) #28 HSD17B8 (ENSPMRG00000001176) #29 ENSPMRG00000001168 RING1 (ENSPMRG00000001157) #30 HLA-DMB (ENSPMRG00000001134) #19 ENSPMRG00000001116 #20 BRD2 (ENSPMRG00000001062) #22 ENSPMRG00000001024 ENSPMRG00000001014 ENSPMRG00000000998 ENSPMRG00000000989 ENSPMRG00000000964 ENSPMRG00000000946 ENSPMRG00000000925 ENSPMRG00000000909 ENSPMRG00000000899 ENSPMRG00000000878 ENSPMRG00000000845 ENSPMRG00000000821 ENSPMRG00000000769 ENSPMRG00000000727 ENSPMRG00000000707 Anura ANCESTRAL SPECIES 33 ENSGT01100000263514.B ENSGT00940000161047 ENSGT00940000155739 ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00940000160293 ENSGT00940000175842 ENSGT00940000155431.b ENSGT00940000159023 #17 ENSGT00940000157293.rb #16 ENSGT00940000159897 #18 ENSGT00940000157293.sb #16 ENSGT00940000160381 #19 ENSGT00940000161157 #20 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00950000183127.a.a ENSGT00950000183127.b ENSGT00940000159762.pb #26 ENSGT00940000159208.B #27 ENSGT00940000164565 ENSGT00390000009448 ENSGT00940000160991 ENSGT00940000159200 #37 ENSGT00390000010512 #35 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000012691.d ##32 ENSGT00390000008815 #31 ENSGT00940000161022 #30 Leishan spiny toad MODERN SPECIES 12 ENSLLEG00000017795 ENSLLEG00000017898 ENSLLEG00000017953 ENSLLEG00000018030 ENSLLEG00000018106 ENSLLEG00000018208 ENSLLEG00000018274 ENSLLEG00000019270 #17 ENSLLEG00000020110 ENSLLEG00000020943 #16 ENSLLEG00000021029 #18 ENSLLEG00000021099 ENSLLEG00000021133 #19 ENSLLEG00000021209 #19 HLA-DMA (ENSLLEG00000021329) #20 BRD2 (ENSLLEG00000021438) #22 ENSLLEG00000021555 ENSLLEG00000021644 ENSLLEG00000021989 ENSLLEG00000022079 #26 ENSLLEG00000022230 #26 RXRB (ENSLLEG00000022477) #27 ENSLLEG00000022945 PFDN6 (ENSLLEG00000023220) #35 B3GALT4 (ENSLLEG00000023322) #33 WDR46 (ENSLLEG00000023371) #34 ENSLLEG00000024002 ##32 VPS52 (ENSLLEG00000024171) #31 RING1 (ENSLLEG00000024306) #30 HSD17B8 (ENSLLEG00000024356) #29 ENSLLEG00000024412 Frog DUPLICATION Frog MODERN SPECIES 4 hs2st1 (ENSXETG00000013450) lmo4.1 (ENSXETG00000023295) pkn2 (ENSXETG00000006092) gtf2b (ENSXETG00000006091) kyat3 (ENSXETG00000006090) LRRC8B (ENSXETG00000025190) lrrc8c (ENSXETG00000006089) lrrc8d (ENSXETG00000006088) ENSXETG00000046193 znf326 (ENSXETG00000006087) barhl2 (ENSXETG00000023986) znf644 (ENSXETG00000023985) hfm1 (ENSXETG00000029954) cdc7 (ENSXETG00000023034) tgfbr3 (ENSXETG00000023030) brdt (ENSXETG00000008571) #22 ephx4 (ENSXETG00000023020) btbd8 (ENSXETG00000023013) C1orf146 (ENSXETG00000035474) ENSXETG00000047613 glmn (ENSXETG00000023009) rpap2 (ENSXETG00000023007) gfi1 (ENSXETG00000023006) evi5 (ENSXETG00000023005) rpl5 (ENSXETG00000023004) XB964897 [provisional:lrrc8c] (ENSXETG00000023003) dipk1a (ENSXETG00000023002) mtf2 (ENSXETG00000023001) tmed5 (ENSXETG00000023000) ccdc18 (ENSXETG00000022999) XB1000829 [provisional] (ENSXETG00000022991) Frog MODERN SPECIES 8 rnf5 (ENSXETG00000027728) pbx2 (ENSXETG00000005223) ENSXETG00000035802 ENSXETG00000042143 notch4 (ENSXETG00000031777) ENSXETG00000043963 ENSXETG00000035563 #17 ENSXETG00000049057 #16 psmb9 (ENSXETG00000026029) #18 ENSXETG00000048187 ENSXETG00000046177 ENSXETG00000043651 hla-a (ENSXETG00000017065) HLA-DMB (ENSXETG00000034043) #19 mhc2a (ENSXETG00000017066) #20 brd2 (ENSXETG00000017067) #22 hla-dqa1 (ENSXETG00000047702) ENSXETG00000044382 ENSXETG00000047770 ENSXETG00000044487 ENSXETG00000045519 ENSXETG00000047473 XB5827395 [provisional] (ENSXETG00000025586) col11a2p1 (ENSXETG00000012724) #26 rxrb (ENSXETG00000040714) #27 MGC147402 (ENSXETG00000031644) kifc1 (ENSXETG00000020409) daxx (ENSXETG00000020372) zbtb22 (ENSXETG00000044063) tapbp (ENSXETG00000020402) #37 rgl2 (ENSXETG00000020405) Coelacanth MODERN SPECIES 875 BRD2 (ENSLACG00000014457) #22 PSMB9 (ENSLACG00000014279) #18 ENSLACG00000014125 #17 PSMB8 (ENSLACG00000014047) #16 tap2a (ENSLACG00000013948) ENSLACG00000013487 ENSLACG00000013193 ENSLACG00000012848 HSD17B8 (ENSLACG00000012715) #29 VPS52 (ENSLACG00000012474) #31 ENSLACG00000012423 RING1 (ENSLACG00000012343) #30 ENSLACG00000012273 ENSLACG00000011364 ENSLACG00000011010 RPS18 (ENSLACG00000010919) #32