Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160997 #9	ENSGT00940000154993.m.a.a #10	ENSGT00940000162892.a.a ##12	ENSGT00940000154723.b.m.a ##13	ENSGT00940000162892.a.b #12	ENSGT00940000154723.b.n #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #19	ENSGT00940000161157 #20	ENSGT00860000136081 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #25	ENSGT00940000162390 #24	ENSGT00940000159762 #26	ENSGT00940000159208.B #27	ENSGT00940000160076 #28	ENSGT00940000160668 #29	ENSGT00940000161022 #30	ENSGT00390000008815 #31	ENSGT00390000012691.c.b.m.a ##32	ENSGT00390000012691.c.b.n ##32	ENSGT00940000161798 #33	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Orangutan	MODERN SPECIES	19	TSBP1 (ENSPPYG00000016489) #7	BTNL2 (ENSPPYG00000017215) #8	HLA-DRA (ENSPPYG00000017234) #9	HLA-DRB1 (ENSPPYG00000016490) #10	ENSPPYG00000017216 #11	HLA-DQA2 (ENSPPYG00000017219) #12	HLA-DQB2 (ENSPPYG00000017220) #13	HLA-DOB (ENSPPYG00000017221) #14	TAP2 (ENSPPYG00000017222) #15	PSMB8 (ENSPPYG00000017223) #16	TAP1 (ENSPPYG00000017224) #17	PSMB9 (ENSPPYG00000017225) #18	HLA-DMB (ENSPPYG00000017226) #19	ENSPPYG00000017227 #20	ENSPPYG00000031820 #21	BRD2 (ENSPPYG00000017228) #22	HLA-DOA (ENSPPYG00000016495) #23	ENSPPYG00000029571 #24	HLA-DPA1 (ENSPPYG00000017229) #25	COL11A2 (ENSPPYG00000017238) #26	RXRB (ENSPPYG00000017239) #27	SLC39A7 (ENSPPYG00000017240) #28	HSD17B8 (ENSPPYG00000017241) #29	RING1 (ENSPPYG00000017242) #30	VPS52 (ENSPPYG00000017243) #31	ENSPPYG00000025953 #32	B3GALT4 (ENSPPYG00000017244) #33	WDR46 (ENSPPYG00000017245) #34	PFDN6 (ENSPPYG00000038269) #35	RGL2 (ENSPPYG00000017247) #36	TAPBP (ENSPPYG00000017248) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000154993.m.a.b ##11	ENSGT00940000154993.m.a.a #10	ENSGT00940000162892.a.a ##12	ENSGT00940000154723.b.m.a ##13	ENSGT00940000162892.a.b #12	ENSGT00940000154723.b.n #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #19	ENSGT00940000161157 #20	ENSGT00860000136081 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #25	ENSGT00940000162390 #24	ENSGT00940000159762 #26	ENSGT00940000159208.B #27	ENSGT00940000160076 #28	ENSGT00940000160668 #29	ENSGT00940000161022 #30	ENSGT00390000008815 #31	ENSGT00390000012691.c.b.m.a ##32	ENSGT00390000012691.c.b.n ##32	ENSGT00940000161798 #33	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Gorilla	MODERN SPECIES	19	BTNL2 (ENSGGOG00000009855) #8	HLA-DRA (ENSGGOG00000009861) #9	HLA-DRB5 (ENSGGOG00000037929) ##11	ENSGGOG00000000700 #11	HLA-DQA1 (ENSGGOG00000013538) ##12	HLA-DQB1 (ENSGGOG00000004252) ##13	ENSGGOG00000037744 #12	HLA-DQB2 (ENSGGOG00000014413) #13	HLA-DOB (ENSGGOG00000043194) #14	TAP2 (ENSGGOG00000010941) #15	PSMB8 (ENSGGOG00000010953) #16	TAP1 (ENSGGOG00000010958) #17	PSMB9 (ENSGGOG00000010965) #18	HLA-DMB (ENSGGOG00000022404) #19	ENSGGOG00000005835 #20	BRD2 (ENSGGOG00000043461) #22	ENSGGOG00000005838 #21	HLA-DOA (ENSGGOG00000010653) #23	HLA-DPA1 (ENSGGOG00000013625) #25	HLA-DPB1 (ENSGGOG00000013630) #24	COL11A2 (ENSGGOG00000009799) #26	RXRB (ENSGGOG00000009823) #27	SLC39A7 (ENSGGOG00000009830) #28	HSD17B8 (ENSGGOG00000009838) #29	RING1 (ENSGGOG00000009842) #30	VPS52 (ENSGGOG00000006565) #31	RPS18 (ENSGGOG00000006571) ##32	WDR46 (ENSGGOG00000006578) #34	PFDN6 (ENSGGOG00000006583) #35	RGL2 (ENSGGOG00000006585) #36	TAPBP (ENSGGOG00000006593) #37
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000154993.m.a.b ##11	ENSGT00940000154993.m.a.a #10	ENSGT00940000162892.a.a ##12	ENSGT00940000154723.b.m.a ##13	ENSGT00940000162892.a.b #12	ENSGT00940000154723.b.n #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #19	ENSGT00940000161157 #20	ENSGT00860000136081 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #25	ENSGT00940000162390 #24	ENSGT00940000159762 #26	ENSGT00940000159208.B #27	ENSGT00940000160076 #28	ENSGT00940000160668 #29	ENSGT00940000161022 #30	ENSGT00390000008815 #31	ENSGT00390000012691.c.b.m.a ##32	ENSGT00390000012691.c.b.n ##32	ENSGT00940000161798 #33	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Pan	ANCESTRAL SPECIES	5	ENSGT00940000154993.m.b #11	ENSGT00940000154993.m.a.b ##11	ENSGT00940000162892.a.a ##12	ENSGT00940000154723.b.m.a ##13	ENSGT00940000162892.a.b #12	ENSGT00940000154723.b.n #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #19	ENSGT00940000161157 #20	ENSGT00860000136081 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #25	ENSGT00940000162390 #24	ENSGT00940000159762 #26	ENSGT00940000159208.B #27	ENSGT00940000160076 #28	ENSGT00940000160668 #29	ENSGT00940000161022 #30	ENSGT00390000008815 #31	ENSGT00390000012691.c.b.m.a ##32	ENSGT00940000161798 #33	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Chimpanzee	MODERN SPECIES	19	PATR-DRA (ENSPTRG00000018016) #9	PATR-DRB5 (ENSPTRG00000023735) ##11	ENSPTRG00000051243 #11	PATR-DQB1 (ENSPTRG00000018001) #10	HLA-DQA1 (ENSPTRG00000018017) ##12	HLA-DQB1 (ENSPTRG00000018018) ##13	HLA-DQA2 (ENSPTRG00000034186) #12	HLA-DQB2 (ENSPTRG00000023404) #13	PATR-DOB (ENSPTRG00000018020) #14	TAP2 (ENSPTRG00000018021) #15	PSMB8 (ENSPTRG00000018022) #16	TAP1 (ENSPTRG00000018023) #17	PSMB9 (ENSPTRG00000018024) #18	PATR-DMB (ENSPTRG00000018025) #19	ENSPTRG00000018026 #20	BRD2 (ENSPTRG00000042676) #22	ENSPTRG00000018027 #21	HLA-DOA (ENSPTRG00000018028) #23	HLA-DPA1 (ENSPTRG00000018029) #25	HLA-DPB1 (ENSPTRG00000018030) #24	COL11A2 (ENSPTRG00000018033) #26	RXRB (ENSPTRG00000018034) #27	SLC39A7 (ENSPTRG00000018035) #28	HSD17B8 (ENSPTRG00000018036) #29	RING1 (ENSPTRG00000018037) #30	VPS52 (ENSPTRG00000018038) #31	RPS18 (ENSPTRG00000018039) ##32	WDR46 (ENSPTRG00000018040) #34	PFDN6 (ENSPTRG00000018041) #35	RGL2 (ENSPTRG00000018042) #36	TAPBP (ENSPTRG00000018043) #37
Bonobo	MODERN SPECIES	19	ENSPPAG00000036652 #11	ENSPPAG00000039594 ##11	ENSPPAG00000019881 ##12	HLA-DQB1 (ENSPPAG00000041275) ##13	HLA-DQA2 (ENSPPAG00000038014) #12	HLA-DQB2 (ENSPPAG00000041341) #13	HLA-DOB (ENSPPAG00000027428) #14	TAP2 (ENSPPAG00000033938) #15	PSMB8 (ENSPPAG00000042377) #16	TAP1 (ENSPPAG00000029436) #17	PSMB9 (ENSPPAG00000038623) #18	ENSPPAG00000033020	HLA-DMB (ENSPPAG00000037856) #19	HLA-DMA (ENSPPAG00000041639) #20	ENSPPAG00000027710 #21	BRD2 (ENSPPAG00000016843) #22	HLA-DOA (ENSPPAG00000036361) #23	HLA-DPA1 (ENSPPAG00000031863) #25	HLA-DPB1 (ENSPPAG00000041449) #24	COL11A2 (ENSPPAG00000013099) #26	RXRB (ENSPPAG00000038590) #27	SLC39A7 (ENSPPAG00000028225) #28	HSD17B8 (ENSPPAG00000032286) #29	RING1 (ENSPPAG00000001290) #30	VPS52 (ENSPPAG00000039628) #31	RPS18 (ENSPPAG00000037432) ##32	B3GALT4 (ENSPPAG00000040442) #33	WDR46 (ENSPPAG00000029606) #34	PFDN6 (ENSPPAG00000026096) #35	RGL2 (ENSPPAG00000030717) #36	TAPBP (ENSPPAG00000024524) #37
Human	MODERN SPECIES	18	HLA-DRB5 (ENSG00000198502) ##11	HLA-DRB1 (ENSG00000196126) #10	HLA-DQA1 (ENSG00000196735) ##12	HLA-DQB1 (ENSG00000179344) ##13	HLA-DQA2 (ENSG00000237541) #12	HLA-DQB2 (ENSG00000232629) #13	HLA-DOB (ENSG00000241106) #14	ENSG00000250264	TAP2 (ENSG00000204267) #15	PSMB8 (ENSG00000204264) #16	PSMB9 (ENSG00000240065) #18	TAP1 (ENSG00000168394) #17	HLA-DMB (ENSG00000242574) #19	ENSG00000248993	HLA-DMA (ENSG00000204257) #20	BRD2 (ENSG00000204256) #22	HLA-DOA (ENSG00000204252) #23	HLA-DPA1 (ENSG00000231389) #25	HLA-DPB1 (ENSG00000223865) #24	COL11A2 (ENSG00000204248) #26	RXRB (ENSG00000204231) #27	SLC39A7 (ENSG00000112473) #28	HSD17B8 (ENSG00000204228) #29	RING1 (ENSG00000204227) #30	VPS52 (ENSG00000223501) #31	RPS18 (ENSG00000231500) ##32	B3GALT4 (ENSG00000235863) #33	WDR46 (ENSG00000227057) #34	PFDN6 (ENSG00000204220) #35	RGL2 (ENSG00000237441) #36	TAPBP (ENSG00000231925) #37