Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154993 #10	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000161821	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Primates	ANCESTRAL SPECIES	5	ENSGT00530000064839	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993 #10	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000163287	ENSGT00530000064839	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993 #10	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00530000064839	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000154993.m.b #9	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162892.a.b #13	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000154993.m.b #9	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162892.a.b #13	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.a #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160997 #7	ENSGT00940000154993.m.a.a #10	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162892.a.b #13	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.a #33	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000154993.m.a.b #8	ENSGT00940000154993.m.a.a #10	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162892.a.b #13	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.a #33	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000154993.m.a.b #8	ENSGT00940000154993.m.a.a #10	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162892.a.b #13	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.a #33	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Pan	ANCESTRAL SPECIES	5	ENSGT00940000154993.m.b #9	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162892.a.b #13	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.a #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Chimpanzee	MODERN SPECIES	19	PATR-DRA (ENSPTRG00000018016) #7	PATR-DRB5 (ENSPTRG00000023735) #8	ENSPTRG00000051243 #9	PATR-DQB1 (ENSPTRG00000018001) #10	HLA-DQA1 (ENSPTRG00000018017) #11	HLA-DQB1 (ENSPTRG00000018018) #12	HLA-DQA2 (ENSPTRG00000034186) #13	HLA-DQB2 (ENSPTRG00000023404) #14	PATR-DOB (ENSPTRG00000018020) #15	TAP2 (ENSPTRG00000018021) #16	PSMB8 (ENSPTRG00000018022) #17	TAP1 (ENSPTRG00000018023) #18	PSMB9 (ENSPTRG00000018024) #19	PATR-DMB (ENSPTRG00000018025) #20	ENSPTRG00000018026 #21	BRD2 (ENSPTRG00000042676) #22	ENSPTRG00000018027 #23	HLA-DOA (ENSPTRG00000018028) #24	HLA-DPA1 (ENSPTRG00000018029) #25	HLA-DPB1 (ENSPTRG00000018030) #26	COL11A2 (ENSPTRG00000018033) #27	RXRB (ENSPTRG00000018034) #28	SLC39A7 (ENSPTRG00000018035) #29	HSD17B8 (ENSPTRG00000018036) #30	RING1 (ENSPTRG00000018037) #31	VPS52 (ENSPTRG00000018038) #32	RPS18 (ENSPTRG00000018039) #33	WDR46 (ENSPTRG00000018040) #34	PFDN6 (ENSPTRG00000018041) #35	RGL2 (ENSPTRG00000018042) #36	TAPBP (ENSPTRG00000018043) #37
Bonobo	MODERN SPECIES	19	ENSPPAG00000036652 #9	ENSPPAG00000039594 #8	ENSPPAG00000019881 #11	HLA-DQB1 (ENSPPAG00000041275) #12	HLA-DQA2 (ENSPPAG00000038014) #13	HLA-DQB2 (ENSPPAG00000041341) #14	HLA-DOB (ENSPPAG00000027428) #15	TAP2 (ENSPPAG00000033938) #16	PSMB8 (ENSPPAG00000042377) #17	TAP1 (ENSPPAG00000029436) #18	PSMB9 (ENSPPAG00000038623) #19	ENSPPAG00000033020	HLA-DMB (ENSPPAG00000037856) #20	HLA-DMA (ENSPPAG00000041639) #21	ENSPPAG00000027710 #23	BRD2 (ENSPPAG00000016843) #22	HLA-DOA (ENSPPAG00000036361) #24	HLA-DPA1 (ENSPPAG00000031863) #25	HLA-DPB1 (ENSPPAG00000041449) #26	COL11A2 (ENSPPAG00000013099) #27	RXRB (ENSPPAG00000038590) #28	SLC39A7 (ENSPPAG00000028225) #29	HSD17B8 (ENSPPAG00000032286) #30	RING1 (ENSPPAG00000001290) #31	VPS52 (ENSPPAG00000039628) #32	RPS18 (ENSPPAG00000037432) #33	B3GALT4 (ENSPPAG00000040442)	WDR46 (ENSPPAG00000029606) #34	PFDN6 (ENSPPAG00000026096) #35	RGL2 (ENSPPAG00000030717) #36	TAPBP (ENSPPAG00000024524) #37
Human	MODERN SPECIES	18	HLA-DRB5 (ENSG00000198502) #8	HLA-DRB1 (ENSG00000196126) #10	HLA-DQA1 (ENSG00000196735) #11	HLA-DQB1 (ENSG00000179344) #12	HLA-DQA2 (ENSG00000237541) #13	HLA-DQB2 (ENSG00000232629) #14	HLA-DOB (ENSG00000241106) #15	ENSG00000250264	TAP2 (ENSG00000204267) #16	PSMB8 (ENSG00000204264) #17	PSMB9 (ENSG00000240065) #19	TAP1 (ENSG00000168394) #18	HLA-DMB (ENSG00000242574) #20	ENSG00000248993	HLA-DMA (ENSG00000204257) #21	BRD2 (ENSG00000204256) #22	HLA-DOA (ENSG00000204252) #24	HLA-DPA1 (ENSG00000231389) #25	HLA-DPB1 (ENSG00000223865) #26	COL11A2 (ENSG00000204248) #27	RXRB (ENSG00000204231) #28	SLC39A7 (ENSG00000112473) #29	HSD17B8 (ENSG00000204228) #30	RING1 (ENSG00000204227) #31	VPS52 (ENSG00000223501) #32	RPS18 (ENSG00000231500) ##33	B3GALT4 (ENSG00000235863)	WDR46 (ENSG00000227057) #34	PFDN6 (ENSG00000204220) #35	RGL2 (ENSG00000237441) #36	TAPBP (ENSG00000231925) #37
Gorilla	MODERN SPECIES	19	BTNL2 (ENSGGOG00000009855)	HLA-DRA (ENSGGOG00000009861) #7	HLA-DRB5 (ENSGGOG00000037929) #8	ENSGGOG00000000700 #9	HLA-DQA1 (ENSGGOG00000013538) #11	HLA-DQB1 (ENSGGOG00000004252) #12	ENSGGOG00000037744 #13	HLA-DQB2 (ENSGGOG00000014413) #14	HLA-DOB (ENSGGOG00000043194) #15	TAP2 (ENSGGOG00000010941) #16	PSMB8 (ENSGGOG00000010953) #17	TAP1 (ENSGGOG00000010958) #18	PSMB9 (ENSGGOG00000010965) #19	HLA-DMB (ENSGGOG00000022404) #20	ENSGGOG00000005835 #21	BRD2 (ENSGGOG00000043461) #22	ENSGGOG00000005838 #23	HLA-DOA (ENSGGOG00000010653) #24	HLA-DPA1 (ENSGGOG00000013625) #25	HLA-DPB1 (ENSGGOG00000013630) #26	COL11A2 (ENSGGOG00000009799) #27	RXRB (ENSGGOG00000009823) #28	SLC39A7 (ENSGGOG00000009830) #29	HSD17B8 (ENSGGOG00000009838) #30	RING1 (ENSGGOG00000009842) #31	VPS52 (ENSGGOG00000006565) #32	RPS18 (ENSGGOG00000006571) #33	WDR46 (ENSGGOG00000006578) #34	PFDN6 (ENSGGOG00000006583) #35	RGL2 (ENSGGOG00000006585) #36	TAPBP (ENSGGOG00000006593) #37
Orangutan	MODERN SPECIES	19	TSBP1 (ENSPPYG00000016489)	BTNL2 (ENSPPYG00000017215)	HLA-DRA (ENSPPYG00000017234) #7	HLA-DRB1 (ENSPPYG00000016490) #10	ENSPPYG00000017216 #9	HLA-DQA2 (ENSPPYG00000017219) #13	HLA-DQB2 (ENSPPYG00000017220) #14	HLA-DOB (ENSPPYG00000017221) #15	TAP2 (ENSPPYG00000017222) #16	PSMB8 (ENSPPYG00000017223) #17	TAP1 (ENSPPYG00000017224) #18	PSMB9 (ENSPPYG00000017225) #19	HLA-DMB (ENSPPYG00000017226) #20	ENSPPYG00000017227 #21	ENSPPYG00000031820 #23	BRD2 (ENSPPYG00000017228) #22	HLA-DOA (ENSPPYG00000016495) #24	ENSPPYG00000029571 #26	HLA-DPA1 (ENSPPYG00000017229) #25	COL11A2 (ENSPPYG00000017238) #27	RXRB (ENSPPYG00000017239) #28	SLC39A7 (ENSPPYG00000017240) #29	HSD17B8 (ENSPPYG00000017241) #30	RING1 (ENSPPYG00000017242) #31	VPS52 (ENSPPYG00000017243) #32	ENSPPYG00000025953 ##33	B3GALT4 (ENSPPYG00000017244)	WDR46 (ENSPPYG00000017245) #34	PFDN6 (ENSPPYG00000038269) #35	RGL2 (ENSPPYG00000017247) #36	TAPBP (ENSPPYG00000017248) #37
Gibbon	MODERN SPECIES	10	HLA-DRA (ENSNLEG00000006686) #7	ENSNLEG00000032832 #9	HLA-DQA1 (ENSNLEG00000032515) #11	HLA-DQB1 (ENSNLEG00000006693) #12	HLA-DQA2 (ENSNLEG00000027015) #13	HLA-DQB2 (ENSNLEG00000006713) #14	HLA-DOB (ENSNLEG00000027543) #15	TAP2 (ENSNLEG00000006714) #16	PSMB8 (ENSNLEG00000006733) #17	TAP1 (ENSNLEG00000006738) #18	PSMB9 (ENSNLEG00000006757) #19	ENSNLEG00000032895	HLA-DMB (ENSNLEG00000006770) #20	HLA-DMA (ENSNLEG00000006775) #21	ENSNLEG00000032110 #23	BRD2 (ENSNLEG00000006782) #22	ENSNLEG00000031675 #24	HLA-DPA1 (ENSNLEG00000034417) #25	HLA-DPB1 (ENSNLEG00000006801) #26	ENSNLEG00000030023 #27	RXRB (ENSNLEG00000006809) #28	SLC39A7 (ENSNLEG00000006815) #29	HSD17B8 (ENSNLEG00000006824) #30	RING1 (ENSNLEG00000006830) #31	VPS52 (ENSNLEG00000006832) #32	RPS18 (ENSNLEG00000006840) #33	B3GALT4 (ENSNLEG00000006841)	ENSNLEG00000006842 #34	PFDN6 (ENSNLEG00000034338) #35	RGL2 (ENSNLEG00000006847) #36	ENSNLEG00000006852 #37
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000154993.m.b #9	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a.a #11	ENSGT00940000154723.b.m.b ##14	ENSGT00940000162892.a.a.b #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	177	ENSGT00940000154993.m.a.a #10	ENSGT00940000154993.m.b #9	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a.a #11	ENSGT00940000154723.b.m.b ##14	ENSGT00940000154723.b.n #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.nc #22	ENSGT00940000162112 #24
Golden snub-nosed monkey	MODERN SPECIES	1416								TAP2 (ENSRROG00000033497) #16	PSMB8 (ENSRROG00000019326) #17	TAP1 (ENSRROG00000021353) #18	PSMB9 (ENSRROG00000005028) #19	ENSRROG00000012955	HLA-DMB (ENSRROG00000039771) #20	HLA-DMA (ENSRROG00000037828) #21	ENSRROG00000034857 #23	ENSRROG00000012557 #22	HLA-DOA (ENSRROG00000000054) #24
Black snub-nosed monkey	MODERN SPECIES	1396					HLA-DQA1 (ENSRBIG00000031838) #11	ENSRBIG00000031872 ##14	HLA-DOB (ENSRBIG00000039119) #15	TAP2 (ENSRBIG00000042752) #16	PSMB8 (ENSRBIG00000032621) #17	TAP1 (ENSRBIG00000038729) #18	PSMB9 (ENSRBIG00000042419) #19	ENSRBIG00000031206	HLA-DMB (ENSRBIG00000031730) #20	HLA-DMA (ENSRBIG00000027897) #21	ENSRBIG00000033102 #23	ENSRBIG00000044329 #22	HLA-DOA (ENSRBIG00000041291) #24
Rhinopithecus	ANCESTRAL SPECIES	229												ENSGT01010000222336.a.a.a.ob.a.a.o	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b	ENSGT00390000000083.a	ENSGT00390000013207	ENSGT00940000153385.b.a.b.oc #22	ENSGT00940000156005	ENSGT00940000156891	ENSGT00940000158751	ENSGT00730000111019	ENSGT00390000016097	ENSGT00390000009546.a	ENSGT00910000147388	ENSGT00860000135749	ENSGT00940000159153	ENSGT00940000157159	ENSGT00940000155944	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000157417	ENSGT00940000158243	ENSGT00940000161472
Black snub-nosed monkey	MODERN SPECIES	713												ENSRBIG00000023969	ENSRBIG00000031681	RIOX1 (ENSRBIG00000017859)	HEATR4 (ENSRBIG00000041847)	ENSRBIG00000015372 #22	NUMB (ENSRBIG00000043156)	PAPLN (ENSRBIG00000033248)	PSEN1 (ENSRBIG00000019293)	RBM25 (ENSRBIG00000039904)	ZFYVE1 (ENSRBIG00000036107)	DCAF4 (ENSRBIG00000041818)	ENSRBIG00000040543	ENSRBIG00000038609	DPF3 (ENSRBIG00000021314)	RGS6 (ENSRBIG00000038422)	SIPA1L1 (ENSRBIG00000013622)	ENSRBIG00000033864	PCNX1 (ENSRBIG00000027567)	MAP3K9 (ENSRBIG00000031048)	TTC9 (ENSRBIG00000041695)
Golden snub-nosed monkey	MODERN SPECIES	797												ENSRROG00000036776	ENSRROG00000039724	RIOX1 (ENSRROG00000010218)	HEATR4 (ENSRROG00000040469)	ENSRROG00000035725 #22	NUMB (ENSRROG00000039499)	PAPLN (ENSRROG00000032324)	PSEN1 (ENSRROG00000023023)	RBM25 (ENSRROG00000035556)	ENSRROG00000028901	ZFYVE1 (ENSRROG00000037742)	DCAF4 (ENSRROG00000035960)	ENSRROG00000044529	ENSRROG00000045287	DPF3 (ENSRROG00000039384)	RGS6 (ENSRROG00000040751)
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.pc #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.pc #22
Macaca	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.pc #22
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000157246	ENSGT01030000234542.b.b.a.a.a.b.u	ENSGT01060000248581.A.b.l	ENSGT00940000164421.c	ENSGT01100000263561.C.d.a.a	ENSGT01100000263561.C.d.a.b.a	ENSGT00940000164421.d	ENSGT01060000248581.A.b.k	ENSGT00940000154646.C.n.a	ENSGT00940000161507	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00940000153385.b.a.b.pc #22	ENSGT00940000162790.a	ENSGT00940000162086	ENSGT00940000160234	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207.a	ENSGT00940000159972	ENSGT00940000162084	ENSGT00940000153523.j	ENSGT00950000183216.d	ENSGT00940000153523.i.b	ENSGT00940000162597	ENSGT00940000163161
Crab-eating macaque	MODERN SPECIES	10	RAB8A (ENSMFAG00000035674)	ENSMFAG00000042469	ENSMFAG00000018623	CYP4F11 (ENSMFAG00000039188)	OR10H5 (ENSMFAG00000054868)	ENSMFAG00000054713	CYP4F57 (ENSMFAG00000045394)	ENSMFAG00000052137	ENSMFAG00000053879	CYP4F22 (ENSMFAG00000043198)	PGLYRP2 (ENSMFAG00000024296)	WIZ (ENSMFAG00000039361)	ENSMFAG00000051652	AKAP8L (ENSMFAG00000045237)	AKAP8 (ENSMFAG00000042432)	ENSMFAG00000030806 #22	EPHX3 (ENSMFAG00000001020)	ILVBL (ENSMFAG00000030909)	SYDE1 (ENSMFAG00000037133)	OR1I1 (ENSMFAG00000049100)	CASP14 (ENSMFAG00000045231)	CCDC105 (ENSMFAG00000039156)	SLC1A6 (ENSMFAG00000003076)	OR7C2 (ENSMFAG00000034243)	ENSMFAG00000057232	ENSMFAG00000047405	ENSMFAG00000058125	ZNF333 (ENSMFAG00000035483)	ADGRE2 (ENSMFAG00000038126)	CLEC17A (ENSMFAG00000043558)	NDUFB7 (ENSMFAG00000043529)
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.qc.a #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.qc.a #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.qc.a #22
Cercopithecinae_d	DUPLICATION
Cercopithecinae_d	ANCESTRAL SPECIES	68	ENSGT00390000004799	ENSGT00390000018900	ENSGT00940000153165.a.b.a	ENSGT00940000164696	ENSGT00940000164691.a.b	ENSGT00940000164793	ENSGT00940000154251.A.b.a.b.a	ENSGT00950000183206.b.c.a.b.a.a	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000158134.A	ENSGT00940000162666	ENSGT00940000162246	ENSGT01090000259995.b.b.b	ENSGT00940000153385.b.a.b.qc.a.a #22	ENSGT01090000259995.b.b.a.b.o	ENSGT01090000259995.b.b.a.a.b.o.a.b	ENSGT01090000259995.b.b.a.a.b.p.a
Drill	MODERN SPECIES	279														TRIM58 (ENSMLEG00000030196)	OR2AJ1 (ENSMLEG00000005755)	ENSMLEG00000031562 #22	ENSMLEG00000011380	ENSMLEG00000037918	ENSMLEG00000027254
Sooty mangabey	MODERN SPECIES	301					ENSCATG00000030246	ZNF124 (ENSCATG00000035310)	ENSCATG00000038074	ENSCATG00000005868	ZNF496 (ENSCATG00000031929)	NLRP3 (ENSCATG00000029371)	OR2B11 (ENSCATG00000043410)	GCSAML (ENSCATG00000030752)	OR13G1 (ENSCATG00000043354)	TRIM58 (ENSCATG00000038759)	ENSCATG00000030481	ENSCATG00000039502 #22	ENSCATG00000034652	ENSCATG00000017262	ENSCATG00000015507
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.qc.a.b #22
Sooty mangabey	MODERN SPECIES	333	SMTNL1 (ENSCATG00000009203)	TIMM10 (ENSCATG00000030369)	SLC43A1 (ENSCATG00000036597)	RTN4RL2 (ENSCATG00000029746)	SLC43A3 (ENSCATG00000031268)	PRG2 (ENSCATG00000039658)	PRG3 (ENSCATG00000011827)	P2RX3 (ENSCATG00000028693)	SSRP1 (ENSCATG00000041377)	TNKS1BP1 (ENSCATG00000037546)	APLNR (ENSCATG00000019437)	LRRC55 (ENSCATG00000010960)	ENSCATG00000013388	OR9G4 (ENSCATG00000019474)	ENSCATG00000019867	ENSCATG00000031014 #22	OR5M9 (ENSCATG00000020470)	OR8J1 (ENSCATG00000014575)	OR8K1 (ENSCATG00000018484)	ENSCATG00000029525	ENSCATG00000018722	OR5I1 (ENSCATG00000016816)	OR4S2 (ENSCATG00000018258)	ENSCATG00000039191	OR4A8 (ENSCATG00000000891)
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a.a #11	ENSGT00940000154723.b.m.b ##14	ENSGT00940000154993.m.a.a.a #10	ENSGT00940000162892.a.a.b #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.qc.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Vervet Monkey	MODERN SPECIES	8	AGER (ENSCSAG00000009312)	PBX2 (ENSCSAG00000009322)	GPSM3 (ENSCSAG00000009326)	NOTCH4 (ENSCSAG00000009351)	HLA-DRA (ENSCSAG00000009368) #7	ENSCSAG00000009375	HLA-DRB1 (ENSCSAG00000009383) #10	HLA-DQA1 (ENSCSAG00000009389) #11	HLA-DQB1 (ENSCSAG00000009394) #12	HLA-DOB (ENSCSAG00000009402) #15	PSMB8 (ENSCSAG00000009409) #17	TAP1 (ENSCSAG00000009417) #18	PSMB9 (ENSCSAG00000009427) #19	HLA-DMB (ENSCSAG00000009430) #20	HLA-DMA (ENSCSAG00000009436) #21	BRD2 (ENSCSAG00000009445) #22	HLA-DOA (ENSCSAG00000009452) #24	ENSCSAG00000009455 #25	ENSCSAG00000009461 #26	COL11A2 (ENSCSAG00000009488) #27	RXRB (ENSCSAG00000009510) #28	SLC39A7 (ENSCSAG00000009519) #29	HSD17B8 (ENSCSAG00000009530) #30	RING1 (ENSCSAG00000009538) #31	VPS52 (ENSCSAG00000009546) #32	B3GALT4 (ENSCSAG00000019308)	WDR46 (ENSCSAG00000009552) #34	PFDN6 (ENSCSAG00000009556) #35	RGL2 (ENSCSAG00000009562) #36	TAPBP (ENSCSAG00000009568) #37	ZBTB22 (ENSCSAG00000019307)
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000154993.m.a.b #8	ENSGT00940000162892.a.a.a #11	ENSGT00940000154723.b.m.b ##14	ENSGT00940000154993.m.a.a.a #10	ENSGT00940000162892.a.a.b #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.qc.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00910000147736
Macaca	ANCESTRAL SPECIES	9	ENSGT00530000064839	ENSGT00940000160997 #7	ENSGT00940000154993.m.a.a.b.b #10	ENSGT00940000154993.m.b.a.b #9	ENSGT00940000154993.m.a.a.a #10	ENSGT00940000162892.a.a.b #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.qc.b #22	ENSGT00940000162112 #24	ENSGT00940000162498.k #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.b ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00910000147736
Pig-tailed macaque	MODERN SPECIES	528	ENSMNEG00000020869 ##10	ENSMNEG00000018617	ENSMNEG00000044119 #10	HLA-DQA1 (ENSMNEG00000038603) #11	HLA-DQB1 (ENSMNEG00000027969) #12	HLA-DOB (ENSMNEG00000043598) #15	TAP2 (ENSMNEG00000041413) #16	PSMB8 (ENSMNEG00000044942) #17	TAP1 (ENSMNEG00000041518) #18	PSMB9 (ENSMNEG00000038721) #19	ENSMNEG00000036723	ENSMNEG00000035658	HLA-DMB (ENSMNEG00000044507) #20	HLA-DMA (ENSMNEG00000032904) #21	ENSMNEG00000039758 #23	BRD2 (ENSMNEG00000030743) #22	HLA-DOA (ENSMNEG00000008508) #24	HLA-DPA1 (ENSMNEG00000040889) #25	HLA-DPB1 (ENSMNEG00000029725) #26	ENSMNEG00000010287 #26	COL11A2 (ENSMNEG00000022236) #27	RXRB (ENSMNEG00000034252) #28	SLC39A7 (ENSMNEG00000034647) #29	HSD17B8 (ENSMNEG00000036244) #30	RING1 (ENSMNEG00000042339) #31	VPS52 (ENSMNEG00000038741) #32	ENSMNEG00000045500 ##33	WDR46 (ENSMNEG00000034609) #34	PFDN6 (ENSMNEG00000030272) #35	RGL2 (ENSMNEG00000039053) #36	ENSMNEG00000013214
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00890000139566	ENSGT00940000160293	ENSGT00390000002471	ENSGT00940000163287	ENSGT00950000183123.h.b	ENSGT00530000064839	ENSGT00940000160997 #7	ENSGT00940000154993.m.a.b #8	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.qc.b #22	ENSGT00940000162112 #24	ENSGT00940000162498.k #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160668 #30	ENSGT00940000160076 #29	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.m.b ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37	ENSGT00940000160991
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000033054	ENSMFAG00000049929	ENSMFAG00000033140	HLA-DRA (ENSMFAG00000032157) #7	ENSMFAG00000058962 ##10	HLA-DRB5 (ENSMFAG00000000676) #8	ENSMFAG00000054107	HLA-DQA1 (ENSMFAG00000002949) #11	HLA-DOB (ENSMFAG00000003652) #15	TAP2 (ENSMFAG00000037139) #16	TAP1 (ENSMFAG00000041369) #18	PSMB9 (ENSMFAG00000038128) #19	HLA-DMB (ENSMFAG00000004018) #20	HLA-DMA (ENSMFAG00000042109) #21	ENSMFAG00000060572 #23	BRD2 (ENSMFAG00000037520) #22	HLA-DOA (ENSMFAG00000058905) #24	RXRB (ENSMFAG00000003583) #28	HSD17B8 (ENSMFAG00000037332) #30	SLC39A7 (ENSMFAG00000038848) #29	RING1 (ENSMFAG00000002610) #31	COL11A2 (ENSMFAG00000017491) #27	RPS18 (ENSMFAG00000032199) ##33	B3GALT4 (ENSMFAG00000041942)	WDR46 (ENSMFAG00000000475) #34	PFDN6 (ENSMFAG00000041216) #35	RGL2 (ENSMFAG00000039597) #36	TAPBP (ENSMFAG00000000942) #37	ZBTB22 (ENSMFAG00000011344)	DAXX (ENSMFAG00000038728)	ENSMFAG00000058856
Rhesus	MODERN SPECIES	14	RNF5 (ENSMMUG00000018438)	AGER (ENSMMUG00000018442)	PBX2 (ENSMMUG00000018456)	GPSM3 (ENSMMUG00000018459)	NOTCH4 (ENSMMUG00000018461)	ENSMMUG00000029402	TSBP1 (ENSMMUG00000018425)	MAMU-DRA (ENSMMUG00000039082) #7	MAMU-DRB1 (ENSMMUG00000029799) #8	ENSMMUG00000054826	MAMU-DOB (ENSMMUG00000011293) #16	PSMB8 (ENSMMUG00000011301) #18	PSMB9 (ENSMMUG00000011304) #19	ENSMMUG00000063291	MAMU-DMB (ENSMMUG00000022626) #20	BRD2 (ENSMMUG00000023138) #22	MAMU-DOA (ENSMMUG00000015734) #24	ENSMMUG00000041095	ENSMMUG00000019371 #25	COL11A2 (ENSMMUG00000003850) #27	RXRB (ENSMMUG00000003858) #28	HSD17B8 (ENSMMUG00000003861) #30	SLC39A7 (ENSMMUG00000003859) #29	RING1 (ENSMMUG00000003863) #31	ENSMMUG00000003867 ##33	VPS52 (ENSMMUG00000003864) #32	B3GALT4 (ENSMMUG00000064507)	WDR46 (ENSMMUG00000003869) #34	PFDN6 (ENSMMUG00000003871) #35	RGL2 (ENSMMUG00000003872) #36	TAPBP (ENSMMUG00000003875) #37
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00530000064866	ENSGT00940000153251.b.a	ENSGT00390000015391	ENSGT00940000155046.t	ENSGT00940000162892.a.a.b #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162353.h #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.qc.b #22	ENSGT00940000162112 #24	ENSGT00940000162498.n #25	ENSGT00940000162498.m #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.n ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Cercopithecinae_d	ANCESTRAL SPECIES	197					ENSGT00940000162892.a.a.b #11	ENSGT00940000154723.b.m.a #12	ENSGT00940000162353.h #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.qc.b #22	ENSGT00940000162112 #24	ENSGT00940000162498.n #25	ENSGT00940000162390 #26
Drill	MODERN SPECIES	1605							HLA-DOB (ENSMLEG00000044332) #15	TAP2 (ENSMLEG00000040111) #16	PSMB8 (ENSMLEG00000028732) #17	TAP1 (ENSMLEG00000042023) #18	PSMB9 (ENSMLEG00000009919) #19	ENSMLEG00000033307	HLA-DMB (ENSMLEG00000032921) #20	HLA-DMA (ENSMLEG00000039758) #21	ENSMLEG00000035779 #23	ENSMLEG00000042296 #22	HLA-DOA (ENSMLEG00000037836) #24	ENSMLEG00000035946 #25
Sooty mangabey	MODERN SPECIES	451					HLA-DQA1 (ENSCATG00000012156) #11	HLA-DQB1 (ENSCATG00000030073) #12	ENSCATG00000036138 #15	TAP2 (ENSCATG00000038838) #16	PSMB8 (ENSCATG00000024878) #17	TAP1 (ENSCATG00000033980) #18	PSMB9 (ENSCATG00000041856) #19	ENSCATG00000037243	HLA-DMB (ENSCATG00000024024) #20	HLA-DMA (ENSCATG00000030669) #21	ENSCATG00000037729 #23	ENSCATG00000034965 #22	HLA-DOA (ENSCATG00000035917) #24	ENSCATG00000024393 #25	HLA-DPB1 (ENSCATG00000038170) #26
Olive baboon	MODERN SPECIES	16	CDSN (ENSPANG00000047914)	PSORS1C2 (ENSPANG00000024487)	ENSPANG00000049186	CCHCR1 (ENSPANG00000017010)	TCF19 (ENSPANG00000024035)	ENSPANG00000007627	ENSPANG00000044498	HLA-DOB (ENSPANG00000016388) #15	TAP2 (ENSPANG00000015103) #16	PSMB8 (ENSPANG00000016588) #17	TAP1 (ENSPANG00000024178) #18	PSMB9 (ENSPANG00000033974) #19	HLA-DMB (ENSPANG00000019593) #20	HLA-DMA (ENSPANG00000026492) #21	ENSPANG00000035618 #23	BRD2 (ENSPANG00000019626) #22	HLA-DOA (ENSPANG00000031879) #24	HLA-DPA1 (ENSPANG00000018967) #25	HLA-DPB1 (ENSPANG00000005764) #26	COL11A2 (ENSPANG00000009194) #27	RXRB (ENSPANG00000018527) #28	SLC39A7 (ENSPANG00000023633) #29	HSD17B8 (ENSPANG00000023634) #30	RING1 (ENSPANG00000023635) #31	VPS52 (ENSPANG00000026491) #32	RPS18 (ENSPANG00000029306) ##33	B3GALT4 (ENSPANG00000040674)	WDR46 (ENSPANG00000009193) #34	PFDN6 (ENSPANG00000025458) #35	RGL2 (ENSPANG00000023572) #36	TAPBP (ENSPANG00000022348) #37
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000154723.b.k #14	ENSGT00940000154993.n ##10	ENSGT00940000162892.a.a.c #11	ENSGT00940000154723.b.l.a.b #14	ENSGT00940000162892.a.a.d #11	ENSGT00940000154723.b.l.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00390000004757.`b.a	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.lc #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022.b #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Cebidae	ANCESTRAL SPECIES	5			ENSGT00940000154993.n.a ##10	ENSGT00940000162892.a.a.c #11	ENSGT00940000154723.b.l.a.b #14	ENSGT00940000162892.a.a.d #11	ENSGT00940000154723.b.l.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.lc #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022.b #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Cebidae_a	ANCESTRAL SPECIES	25			ENSGT00940000154993.n.a.b ##10	ENSGT00940000162892.a.a.c #11	ENSGT00940000154723.b.l.a.b #14	ENSGT00940000162892.a.a.d #11	ENSGT00940000154723.b.l.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b.lc #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022.b #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37	ENSGT00940000160991
Capuchin	MODERN SPECIES	24	HLA-DRA (ENSCCAG00000027271) #7	ENSCCAG00000033580 ##10	ENSCCAG00000024284 ##10	HLA-DRB1 (ENSCCAG00000025004) #10	HLA-DQA2 (ENSCCAG00000023549) #13	ENSCCAG00000025088 #14	ENSCCAG00000023824 #11	ENSCCAG00000028168 #14	HLA-DOB (ENSCCAG00000034021) #15	TAP2 (ENSCCAG00000035497) #16	PSMB8 (ENSCCAG00000026335) #17	TAP1 (ENSCCAG00000024218) #18	PSMB9 (ENSCCAG00000036808) #19	HLA-DMB (ENSCCAG00000030904) #20	HLA-DMA (ENSCCAG00000031122) #21	ENSCCAG00000016930 #22	HLA-DOA (ENSCCAG00000024211) #24	HLA-DPA1 (ENSCCAG00000035048) #25	HLA-DPB1 (ENSCCAG00000036491) #26	COL11A2 (ENSCCAG00000021086) #27	RXRB (ENSCCAG00000015878) #28	SLC39A7 (ENSCCAG00000021481) #29	HSD17B8 (ENSCCAG00000034063) #30	RING1 (ENSCCAG00000020672) #31	VPS52 (ENSCCAG00000029806) #32	RPS18 (ENSCCAG00000023639) #33	WDR46 (ENSCCAG00000029352) #34	PFDN6 (ENSCCAG00000027108) #35	RGL2 (ENSCCAG00000036457) #36	TAPBP (ENSCCAG00000030579) #37	ZBTB22 (ENSCCAG00000019414)
Bolivian squirrel monkey	MODERN SPECIES	49	DEFB110 (ENSSBOG00000019583)	DEFB112 (ENSSBOG00000031354)	TFAP2D (ENSSBOG00000033191)	TFAP2B (ENSSBOG00000021734)	ENSSBOG00000033280	PKHD1 (ENSSBOG00000026830)	IL17A (ENSSBOG00000031117)	IL17F (ENSSBOG00000022387)	MCM3 (ENSSBOG00000019946)	PAQR8 (ENSSBOG00000008561)	EFHC1 (ENSSBOG00000023512)	TRAM2 (ENSSBOG00000033153)	HLA-DMB (ENSSBOG00000028499) #20	HLA-DMA (ENSSBOG00000020585) #21	ENSSBOG00000034712 #23	ENSSBOG00000033070 #22	HLA-DOA (ENSSBOG00000022957) #24	HLA-DPA1 (ENSSBOG00000026139) #25	HLA-DPB1 (ENSSBOG00000023374) #26	COL11A2 (ENSSBOG00000030814) #27	RXRB (ENSSBOG00000028234) #28	SLC39A7 (ENSSBOG00000027575) #29	HSD17B8 (ENSSBOG00000033905) #30	ENSSBOG00000021715 #31	VPS52 (ENSSBOG00000034931) #32	ENSSBOG00000034369 ##33	WDR46 (ENSSBOG00000032568) #34	PFDN6 (ENSSBOG00000034801) #35	RGL2 (ENSSBOG00000031644) #36	TAPBP (ENSSBOG00000031122) #37	ZBTB22 (ENSSBOG00000018285)
Marmoset	MODERN SPECIES	16	ENSCJAG00000072632	ENSCJAG00000042232	ENSCJAG00000044447	ENSCJAG00000046350	ENSCJAG00000082318	ENSCJAG00000073641	ENSCJAG00000043141	ENSCJAG00000072040	ENSCJAG00000021548 #14	ENSCJAG00000045515 #11	HLA-DOB (ENSCJAG00000035217) #15	TAP2 (ENSCJAG00000021550) #16	TAP1 (ENSCJAG00000021552) #18	PSMB9 (ENSCJAG00000021553) #19	HLA-DMA (ENSCJAG00000021558) #21	ENSCJAG00000021566 #22	HLA-DOA (ENSCJAG00000021571) #24	HLA-DPA1 (ENSCJAG00000057301) #25	HLA-DPB1 (ENSCJAG00000021575) #26	COL11A2 (ENSCJAG00000021577) #27	RXRB (ENSCJAG00000021619) #28	SLC39A7 (ENSCJAG00000021622) #29	ENSCJAG00000021632 #30	RING1 (ENSCJAG00000081691) #31	VPS52 (ENSCJAG00000021644) #32	ENSCJAG00000021650 #33	B3GALT4 (ENSCJAG00000043225)	WDR46 (ENSCJAG00000021659) #34	PFDN6 (ENSCJAG00000021665) #35	RGL2 (ENSCJAG00000021668) #36	TAPBP (ENSCJAG00000021675) #37
Mas night monkey	MODERN SPECIES	1006				ENSANAG00000025439 ##13	ENSANAG00000023444 #14	HLA-DQA2 (ENSANAG00000023973) #13	HLA-DQB2 (ENSANAG00000025105) #14	TAP2 (ENSANAG00000023266) #16	PSMB8 (ENSANAG00000023214) #17	TAP1 (ENSANAG00000025374) #18	PSMB9 (ENSANAG00000018195) #19	ENSANAG00000029686	HLA-DMB (ENSANAG00000031322) #20	HLA-DMA (ENSANAG00000024515) #21	ENSANAG00000022510 #23	BRD2 (ENSANAG00000025054) #22	HLA-DOA (ENSANAG00000023738) #24	ENSANAG00000020251	ENSANAG00000021916	HLA-DPA1 (ENSANAG00000025586) #25
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153385.b.a.b.mc #22
Cebidae	ANCESTRAL SPECIES	1	ENSGT00510000049371.a	ENSGT00390000007658.h	ENSGT00390000015471	ENSGT00390000008338	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000153385.b.a.b.mc #22	ENSGT00390000007027	ENSGT00390000018245.d	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00910000147158	ENSGT00940000157668.e	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243.e	ENSGT00940000156746	ENSGT00940000155661
Cebidae_a	ANCESTRAL SPECIES		ENSGT00510000049371.a	ENSGT00390000007658.h	ENSGT00390000015471	ENSGT00390000008338.i	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000153385.b.a.b.mc #22	ENSGT00390000007027	ENSGT00390000018245.d	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00910000147158	ENSGT00940000157668.e	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243.e.a	ENSGT00940000156746	ENSGT00940000155661
Capuchin	MODERN SPECIES	163	TTC22 (ENSCCAG00000033419)	LEXM (ENSCCAG00000027952)	ENSCCAG00000028192	TMEM61 (ENSCCAG00000024822)	BSND (ENSCCAG00000021350)	ENSCCAG00000030255	PCSK9 (ENSCCAG00000036131)	USP24 (ENSCCAG00000027655)	ENSCCAG00000022168	PLPP3 (ENSCCAG00000001330)	PRKAA2 (ENSCCAG00000035336)	FYB2 (ENSCCAG00000027589)	C8A (ENSCCAG00000024662)	C8B (ENSCCAG00000031384)	DAB1 (ENSCCAG00000024787)	ENSCCAG00000022246 #22	OMA1 (ENSCCAG00000022811)	TACSTD2 (ENSCCAG00000032228)	MYSM1 (ENSCCAG00000029058)	FGGY (ENSCCAG00000033989)	ENSCCAG00000025106	HOOK1 (ENSCCAG00000006471)	CYP2J2 (ENSCCAG00000027549)	C1orf87 (ENSCCAG00000027605)
Bolivian squirrel monkey	MODERN SPECIES	45	TTC4 (ENSSBOG00000032224)	TTC22 (ENSSBOG00000026280)	LEXM (ENSSBOG00000006931)	DHCR24 (ENSSBOG00000025550)	TMEM61 (ENSSBOG00000013875)	BSND (ENSSBOG00000035713)	PCSK9 (ENSSBOG00000029957)	USP24 (ENSSBOG00000022906)	ENSSBOG00000031773	PLPP3 (ENSSBOG00000021254)	PRKAA2 (ENSSBOG00000036202)	FYB2 (ENSSBOG00000024468)	C8A (ENSSBOG00000023783)	C8B (ENSSBOG00000034357)	DAB1 (ENSSBOG00000030885)	ENSSBOG00000024749 #22	OMA1 (ENSSBOG00000023199)	TACSTD2 (ENSSBOG00000024148)	MYSM1 (ENSSBOG00000031552)	ENSSBOG00000029734	FGGY (ENSSBOG00000031213)	HOOK1 (ENSSBOG00000032069)	CYP2J2 (ENSSBOG00000033096)	C1orf87 (ENSSBOG00000033425)	ENSSBOG00000024205	NFIA (ENSSBOG00000030190)	ENSSBOG00000028260	ENSSBOG00000028010	PATJ (ENSSBOG00000022857)	KANK4 (ENSSBOG00000020644)	USP1 (ENSSBOG00000020735)
Marmoset	MODERN SPECIES	19	TTC4 (ENSCJAG00000015611)	TTC22 (ENSCJAG00000015639)	LEXM (ENSCJAG00000015646)	DHCR24 (ENSCJAG00000015653)	TMEM61 (ENSCJAG00000015669)	BSND (ENSCJAG00000042101)	PCSK9 (ENSCJAG00000015682)	USP24 (ENSCJAG00000015739)	PLPP3 (ENSCJAG00000015880)	ENSCJAG00000054878	PRKAA2 (ENSCJAG00000015889)	FYB2 (ENSCJAG00000015907)	C8A (ENSCJAG00000015926)	C8B (ENSCJAG00000015932)	DAB1 (ENSCJAG00000015941)	ENSCJAG00000022997 #22	ENSCJAG00000070548	ENSCJAG00000084546	OMA1 (ENSCJAG00000016000)	ENSCJAG00000074487	TACSTD2 (ENSCJAG00000016017)	MYSM1 (ENSCJAG00000016020)	FGGY (ENSCJAG00000016043)	ENSCJAG00000022957	HOOK1 (ENSCJAG00000016077)	CYP2J2 (ENSCJAG00000016130)	C1orf87 (ENSCJAG00000016137)	ENSCJAG00000053189	ENSCJAG00000022998	NFIA (ENSCJAG00000016165)	ENSCJAG00000078946
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1195																BRD2 (ENSTSYG00000004390) #22	HLA-DOA (ENSTSYG00000005170) #24	HLA-DPA1 (ENSTSYG00000013384) #25	HLA-DPB1 (ENSTSYG00000009782) #26	COL11A2 (ENSTSYG00000027190) #27	RXRB (ENSTSYG00000033111) #28	SLC39A7 (ENSTSYG00000026087) #29	HSD17B8 (ENSTSYG00000029416) #30	RING1 (ENSTSYG00000036469) #31	VPS52 (ENSTSYG00000012493) #32	RPS18 (ENSTSYG00000012508) #33	WDR46 (ENSTSYG00000028390) #34	ENSTSYG00000037267 #35	ENSTSYG00000006290	TAPBP (ENSTSYG00000036113) #37	DAXX (ENSTSYG00000029920)
Tarsier	MODERN SPECIES	1411														CRHR2 (ENSTSYG00000001674)	GARS (ENSTSYG00000008538)	ENSTSYG00000025595 #22	GGCT (ENSTSYG00000001156)	NOD1 (ENSTSYG00000001155)
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000162450	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993 #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993 #10	ENSGT00940000161821	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37	ENSGT00940000160991
Lemuriformes_a	ANCESTRAL SPECIES	76	ENSGT00940000163287	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993 #10	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00860000136081 #23	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	872							HLA-DQB1 (ENSPCOG00000014494) #14	HLA-DOB (ENSPCOG00000022286) #15	TAP2 (ENSPCOG00000014799) #16	PSMB8 (ENSPCOG00000028091) #17	TAP1 (ENSPCOG00000019389) #18	PSMB9 (ENSPCOG00000017686) #19	HLA-DMB (ENSPCOG00000018934) #20	HLA-DMA (ENSPCOG00000022072) #21	ENSPCOG00000016191 #23	ENSPCOG00000018456 #22	ENSPCOG00000018880	HLA-DOA (ENSPCOG00000014372) #24	HLA-DPA1 (ENSPCOG00000015236) #25
Coquerels sifaka	MODERN SPECIES	611	CPZ (ENSPCOG00000018885)	TRMT44 (ENSPCOG00000028809)	ACOX3 (ENSPCOG00000015967)	HTRA3 (ENSPCOG00000015549)	NANP (ENSPCOG00000022703)	ENSPCOG00000014381	NINL (ENSPCOG00000019338)	GINS1 (ENSPCOG00000016034)	ABHD12 (ENSPCOG00000022073)	PYGB (ENSPCOG00000021348)	ENTPD6 (ENSPCOG00000022862)	VSX1 (ENSPCOG00000013919)	ACSS1 (ENSPCOG00000018745)	APMAP (ENSPCOG00000023592)	CST7 (ENSPCOG00000019725)	ENSPCOG00000023905 #22	SYNDIG1 (ENSPCOG00000003880)	ENSPCOG00000021349
Greater bamboo lemur	MODERN SPECIES	650			ENSPSMG00000007220	ENSPSMG00000007226	HLA-DRA (ENSPSMG00000007272) #7	ENSPSMG00000007912	ENSPSMG00000008349 #13	HLA-DQB1 (ENSPSMG00000008743) #14	HLA-DOB (ENSPSMG00000008851) #15	TAP2 (ENSPSMG00000008940) #16	PSMB8 (ENSPSMG00000009083) #17	TAP1 (ENSPSMG00000009102) #18	PSMB9 (ENSPSMG00000009117) #19	HLA-DMB (ENSPSMG00000009134) #20	HLA-DMA (ENSPSMG00000009171) #21	BRD2 (ENSPSMG00000009223) #22	ENSPSMG00000009252	HLA-DOA (ENSPSMG00000009261) #24	HLA-DPA1 (ENSPSMG00000009402) #25	HLA-DPB1 (ENSPSMG00000009639) #26	ENSPSMG00000009792 #25
Mouse lemur	MODERN SPECIES	28	CYP21A2 (ENSMICG00000016652)	ENSMICG00000046247	ENSMICG00000016667	ATF6B (ENSMICG00000047519)	PRRT1 (ENSMICG00000032288)	PPT2 (ENSMICG00000001807)	EGFL8 (ENSMICG00000042415)	AGPAT1 (ENSMICG00000001813)	RNF5 (ENSMICG00000048108)	AGER (ENSMICG00000001823)	PBX2 (ENSMICG00000001829)	GPSM3 (ENSMICG00000026321)	NOTCH4 (ENSMICG00000001835)	HLA-DMB (ENSMICG00000043729) #20	HLA-DMA (ENSMICG00000010132) #21	BRD2 (ENSMICG00000003693) #22	HLA-DOA (ENSMICG00000047683) #24	HLA-DPA1 (ENSMICG00000003711) #25	HLA-DPB1 (ENSMICG00000030867) #26	ENSMICG00000001373	COL11A2 (ENSMICG00000000879) #27	RXRB (ENSMICG00000000899) #28	SLC39A7 (ENSMICG00000000905) #29	HSD17B8 (ENSMICG00000000908) #30	RING1 (ENSMICG00000030050) #31	VPS52 (ENSMICG00000027900) #32	ENSMICG00000035485 #33	WDR46 (ENSMICG00000000916) #34	PFDN6 (ENSMICG00000000922) #35	RGL2 (ENSMICG00000000926) #36	TAPBP (ENSMICG00000042293) #37
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	220	ENSOGAG00000015917	ENSOGAG00000033148	CYP4F115 (ENSOGAG00000011748)	CYP4F113 (ENSOGAG00000007410)	ENSOGAG00000028565	CYP4F112 (ENSOGAG00000031204)	CYP4F111 (ENSOGAG00000002017)	CYP4F3 (ENSOGAG00000032860)	CYP4F22 (ENSOGAG00000030936)	ENSOGAG00000024112	PGLYRP2 (ENSOGAG00000026199)	RASAL3 (ENSOGAG00000033656)	WIZ (ENSOGAG00000010952)	AKAP8L (ENSOGAG00000010943)	AKAP8 (ENSOGAG00000029564)	ENSOGAG00000000840 #22	EPHX3 (ENSOGAG00000006687)	NOTCH3 (ENSOGAG00000006680)	ENSOGAG00000024942	ILVBL (ENSOGAG00000014020)	SYDE1 (ENSOGAG00000014015)	OR1I1 (ENSOGAG00000003203)	CASP14 (ENSOGAG00000024750)	CCDC105 (ENSOGAG00000011860)	SLC1A6 (ENSOGAG00000029166)	ENSOGAG00000033292	OR7C2 (ENSOGAG00000031212)	ENSOGAG00000025389	ENSOGAG00000028478	ENSOGAG00000026639
Bushbaby	MODERN SPECIES	146	ENSOGAG00000013069 #10	ENSOGAG00000025050	BTNL2 (ENSOGAG00000008396)	HLA-DRA (ENSOGAG00000008398) #7	ENSOGAG00000009732 #10	ENSOGAG00000030012	ENSOGAG00000008401	HLA-DQB1 (ENSOGAG00000005662) #14	ENSOGAG00000031343 #16	PSMB8 (ENSOGAG00000013830) #17	TAP1 (ENSOGAG00000013836) #18	PSMB9 (ENSOGAG00000013846) #19	ENSOGAG00000013823 #16	HLA-DMB (ENSOGAG00000032749) #20	HLA-DMA (ENSOGAG00000006029) #21	BRD2 (ENSOGAG00000006473) #22	HLA-DOA (ENSOGAG00000014685) #24	HLA-DPA1 (ENSOGAG00000006476) #25	ENSOGAG00000016138 #26	ENSOGAG00000034269	COL11A2 (ENSOGAG00000025975) #27	RXRB (ENSOGAG00000011689) #28	SLC39A7 (ENSOGAG00000030006) #29	HSD17B8 (ENSOGAG00000006214) #30	RING1 (ENSOGAG00000006220) #31	VPS52 (ENSOGAG00000006222) #32	RPS18 (ENSOGAG00000006225) #33	B3GALT4 (ENSOGAG00000006228)	WDR46 (ENSOGAG00000006230) #34	ENSOGAG00000028341 #35	RGL2 (ENSOGAG00000003996) #36
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154993 #10	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000161821	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Tree shrew	MODERN SPECIES	5170															HLA-DMB (ENSTBEG00000016414) #20	BRD2 (ENSTBEG00000016659) #22
Glires	ANCESTRAL SPECIES	5	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154993 #10	ENSGT00940000162892 #13	ENSGT00940000154723.b #14	ENSGT00940000161821	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Lagomorpha	ANCESTRAL SPECIES	2		ENSGT00940000164957	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154723.b #14	ENSGT00940000154993 #10	ENSGT00940000161821	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162390 #26	ENSGT00940000162498 #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Rabbit	MODERN SPECIES	3	ENSOCUG00000021762	ENSOCUG00000006769	ENSOCUG00000025822	HLA-DRA (ENSOCUG00000009103) #7	ENSOCUG00000029731 #10	ENSOCUG00000030453	HLA-DQB1 (ENSOCUG00000002485) #14	ENSOCUG00000002480	HLA-DOB (ENSOCUG00000029437) #15	TAP2 (ENSOCUG00000002489) #16	PSMB8 (ENSOCUG00000002131) #17	TAP1 (ENSOCUG00000002135) #18	ENSOCUG00000002139 #19	HLA-DMB (ENSOCUG00000026567) #20	HLA-DMA (ENSOCUG00000022573) #21	BRD2 (ENSOCUG00000003097) #22	ENSOCUG00000003319 #24	HLA-DPB1 (ENSOCUG00000008721) #26	COL11A2 (ENSOCUG00000016497) #27	RXRB (ENSOCUG00000011590) #28	SLC39A7 (ENSOCUG00000011598) #29	HSD17B8 (ENSOCUG00000020995) #30	VPS52 (ENSOCUG00000010533) #32	ENSOCUG00000010546 ##33	B3GALT4 (ENSOCUG00000010550)	ENSOCUG00000010554 #34	PFDN6 (ENSOCUG00000010559) #35	RGL2 (ENSOCUG00000026930) #36	TAPBP (ENSOCUG00000010563) #37	DAXX (ENSOCUG00000010574)	SMIM40 (ENSOCUG00000037016)
Pika	MODERN SPECIES	3165														ENSOPRG00000007415 #20	HLA-DMA (ENSOPRG00000007424) #21	BRD2 (ENSOPRG00000007431) #22	HLA-DOA (ENSOPRG00000007456) #24	ENSOPRG00000007464 #25
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000160997 #7	ENSGT00940000154993.k.b #10	ENSGT00940000155371	ENSGT00940000154993.l #10	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Muroidea	ANCESTRAL SPECIES	15	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972	ENSGT00940000161403 #36
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT01030000234972
Cricetinae	ANCESTRAL SPECIES	43	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000154993.k.b.b #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31
Chinese hamster chok1gshd	MODERN SPECIES	303	ENSCGRG00001001955	Btnl1 (ENSCGRG00001017970)	Btnl2 (ENSCGRG00001016923)	H2-Ea (ENSCGRG00001015369) #7	ENSCGRG00001015049	ENSCGRG00001021279 #10	H2-Aa (ENSCGRG00001020824)	H2-Ab1 (ENSCGRG00001020630) #14	H2-Ob (ENSCGRG00001020078) #15	ENSCGRG00001019448	Psmb8 (ENSCGRG00001018009) #17	Tap1 (ENSCGRG00001009114) #18	Psmb9 (ENSCGRG00001007415) #19	ENSCGRG00001001555 #20	H2-DMa (ENSCGRG00001000682) #21	Brd2 (ENSCGRG00001018148) #22	H2-Oa (ENSCGRG00001013616) #24	ENSCGRG00001009189 #25	ENSCGRG00001007476 #26	Col11a2 (ENSCGRG00001016209) #27	Rxrb (ENSCGRG00001000192) #28	Slc39a7 (ENSCGRG00001022298) #29	Hsd17b8 (ENSCGRG00001003834) #30	Ring1 (ENSCGRG00001001992) #31	ENSCGRG00001000484	ENSCGRG00001000045	ENSCGRG00001001839	ENSCGRG00001020054	ENSCGRG00001018024	ENSCGRG00001013282	ENSCGRG00001018149
Golden Hamster	MODERN SPECIES	856	Notch4 (ENSMAUG00000015895)	ENSMAUG00000009410	ENSMAUG00000015609	Btnl1 (ENSMAUG00000016817)	Btnl2 (ENSMAUG00000003530)	H2-Eb2 (ENSMAUG00000018151) #10	H2-Aa (ENSMAUG00000003363)	H2-Ab1 (ENSMAUG00000020395) #14	H2-Ob (ENSMAUG00000007698) #15	Tap2 (ENSMAUG00000015081) #16	Psmb8 (ENSMAUG00000003396) #17	Tap1 (ENSMAUG00000017718) #18	Psmb9 (ENSMAUG00000007584) #19	ENSMAUG00000008923 #20	H2-DMa (ENSMAUG00000000861) #21	Brd2 (ENSMAUG00000006799) #22	Col11a2 (ENSMAUG00000021348) #27	Rxrb (ENSMAUG00000009043) #28	Slc39a7 (ENSMAUG00000015255) #29	Hsd17b8 (ENSMAUG00000013407) #30	Ring1 (ENSMAUG00000012254) #31
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000154993.l #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Northern American deer mouse	MODERN SPECIES	13	Btnl2 (ENSPEMG00000007431)	H2-Ea (ENSPEMG00000008261) #7	H2-Eb2 (ENSPEMG00000006456) #10	H2-Eb1 (ENSPEMG00000002889)	ENSPEMG00000012679	ENSPEMG00000015401 #14	ENSPEMG00000007095	ENSPEMG00000012719 #14	H2-Ob (ENSPEMG00000001796) #15	Tap2 (ENSPEMG00000010503) #16	Psmb8 (ENSPEMG00000012170) #17	Tap1 (ENSPEMG00000012461) #18	Psmb9 (ENSPEMG00000009609) #19	ENSPEMG00000018040 #20	H2-DMa (ENSPEMG00000013203) #21	Brd2 (ENSPEMG00000018138) #22	H2-Oa (ENSPEMG00000011158) #24	ENSPEMG00000015442 #25	ENSPEMG00000026148 #26	Col11a2 (ENSPEMG00000016918) #27	Rxrb (ENSPEMG00000018454) #28	Slc39a7 (ENSPEMG00000003403) #29	Hsd17b8 (ENSPEMG00000012925) #30	Ring1 (ENSPEMG00000019238) #31	ENSPEMG00000024622	ENSPEMG00000030975	ENSPEMG00000030319	Rps18 (ENSPEMG00000005058) #33	B3galt4 (ENSPEMG00000004762)	Wdr46 (ENSPEMG00000019179) #34	Pfdn6 (ENSPEMG00000005228) #35
Prairie vole	MODERN SPECIES	352	ENSMOCG00000011431	Btnl1 (ENSMOCG00000018715)	Btnl2 (ENSMOCG00000014437)	H2-Ea (ENSMOCG00000008786) #7	ENSMOCG00000019721	ENSMOCG00000017941 #10	ENSMOCG00000013355	H2-Ab1 (ENSMOCG00000008439) #14	H2-Ob (ENSMOCG00000008562) #15	Tap2 (ENSMOCG00000022898) #16	Psmb8 (ENSMOCG00000014719) #17	Tap1 (ENSMOCG00000019762) #18	Psmb9 (ENSMOCG00000005369) #19	ENSMOCG00000022309 #20	H2-DMa (ENSMOCG00000002744) #21	Brd2 (ENSMOCG00000016368) #22	H2-Oa (ENSMOCG00000020236) #24	ENSMOCG00000010963 #25	Col11a2 (ENSMOCG00000016852) #27	Rxrb (ENSMOCG00000000374) #28	Slc39a7 (ENSMOCG00000019993) #29	Hsd17b8 (ENSMOCG00000001695) #30	Ring1 (ENSMOCG00000020973) #31	ENSMOCG00000014473	Vps52 (ENSMOCG00000004229) #32	Rps18 (ENSMOCG00000018024) #33	B3galt4 (ENSMOCG00000011979)	Wdr46 (ENSMOCG00000014412) #34	Pfdn6 (ENSMOCG00000022424) #35	Rgl2 (ENSMOCG00000022698) #36	Tapbp (ENSMOCG00000010072) #37
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Mus	ANCESTRAL SPECIES	16	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00980000198488.m.a.b.a.b.a.a.a.c	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381.h #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381.h #20	ENSGT00940000160381.g #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512.`b #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Mouse	MODERN SPECIES	8	Btnl1 (ENSMUSG00000062638)	Btnl2 (ENSMUSG00000024340)	H2-Ea (ENSMUSG00000036322) #7	H2-Eb2 (ENSMUSG00000067341) #10	H2-Eb1 (ENSMUSG00000060586)	H2-Aa (ENSMUSG00000036594)	H2-Ab1 (ENSMUSG00000073421) #14	H2-Ob (ENSMUSG00000041538) #15	Tap2 (ENSMUSG00000024339) #16	Psmb8 (ENSMUSG00000024338) #17	Tap1 (ENSMUSG00000037321) #18	Psmb9 (ENSMUSG00000096727) #19	H2-DMb1 (ENSMUSG00000079547) #20	H2-DMb2 (ENSMUSG00000037548) #20	H2-DMa (ENSMUSG00000037649) #21	Brd2 (ENSMUSG00000024335) #22	H2-Oa (ENSMUSG00000024334) #24	Col11a2 (ENSMUSG00000024330) #27	Rxrb (ENSMUSG00000039656) #28	Slc39a7 (ENSMUSG00000024327) #29	Hsd17b8 (ENSMUSG00000073422) #30	Ring1 (ENSMUSG00000024325) #31	H2-K1 (ENSMUSG00000061232)	Vps52 (ENSMUSG00000024319) #32	Rps18 (ENSMUSG00000008668) #33	B3galt4 (ENSMUSG00000067370)	Wdr46 (ENSMUSG00000024312) #34	Pfdn6 (ENSMUSG00000024309) #35	Rgl2 (ENSMUSG00000041354) #36	Zbtb22 (ENSMUSG00000051390)	Tapbp (ENSMUSG00000024308) #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381.h #20	ENSGT00940000160381.g #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a	ENSGT00390000008815 #32	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512.`b #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Steppe mouse	MODERN SPECIES	2564	Btnl1 (ENSMSIG00000010748)	Btnl2 (ENSMSIG00000010760)	H2-Ea (ENSMSIG00000010776) #7	H2-Eb2 (ENSMSIG00000010788) #10	ENSMSIG00000010807	H2-Aa (ENSMSIG00000010823)	ENSMSIG00000010843 #14	H2-Ob (ENSMSIG00000010868) #15	Tap2 (ENSMSIG00000010919) #16	ENSMSIG00000010972	Psmb8 (ENSMSIG00000010986) #17	ENSMSIG00000011012 #18	Psmb9 (ENSMSIG00000011042) #19	H2-DMb1 (ENSMSIG00000011055) #20	H2-DMa (ENSMSIG00000011088) #21	Brd2 (ENSMSIG00000011118) #22	H2-Oa (ENSMSIG00000011198) #24	ENSMSIG00000011214 #25	Col11a2 (ENSMSIG00000011347) #27	Rxrb (ENSMSIG00000012091) #28	Slc39a7 (ENSMSIG00000012137) #29	ENSMSIG00000012153 #30	Ring1 (ENSMSIG00000012190) #31	ENSMSIG00000012243	ENSMSIG00000012249	Vps52 (ENSMSIG00000012295) #32	Rps18 (ENSMSIG00000012382) #33	B3galt4 (ENSMSIG00000012406)	Wdr46 (ENSMSIG00000012419) #34	Pfdn6 (ENSMSIG00000012469) #35	Rgl2 (ENSMSIG00000012505) #36
spretus	MODERN SPECIES	8	Btnl1 (MGP_SPRETEiJ_G0022363)	Btnl2 (MGP_SPRETEiJ_G0022362)	H2-Eb2 (MGP_SPRETEiJ_G0022361) #10	MGP_SPRETEiJ_G0022360	H2-Aa (MGP_SPRETEiJ_G0022359)	H2-Ab1 (MGP_SPRETEiJ_G0022358) #14	H2-Ob (MGP_SPRETEiJ_G0022357) #15	MGP_SPRETEiJ_G0022356	Tap2 (MGP_SPRETEiJ_G0022355) #16	Psmb8 (MGP_SPRETEiJ_G0022354) #17	Tap1 (MGP_SPRETEiJ_G0022353) #18	Psmb9 (MGP_SPRETEiJ_G0022352) #19	H2-DMb2 (MGP_SPRETEiJ_G0022351) #20	MGP_SPRETEiJ_G0022350 #20	H2-DMa (MGP_SPRETEiJ_G0022349) #21	Brd2 (MGP_SPRETEiJ_G0022348) #22	H2-Oa (MGP_SPRETEiJ_G0022347) #24	Col11a2 (MGP_SPRETEiJ_G0022346) #27	Rxrb (MGP_SPRETEiJ_G0022345) #28	Slc39a7 (MGP_SPRETEiJ_G0022344) #29	Hsd17b8 (MGP_SPRETEiJ_G0022343) #30	Ring1 (MGP_SPRETEiJ_G0022342) #31	MGP_SPRETEiJ_G0022340 ##33	B3galt4 (MGP_SPRETEiJ_G0022339)	Wdr46 (MGP_SPRETEiJ_G0022338) #34	Pfdn6 (MGP_SPRETEiJ_G0022337) #35	Rgl2 (MGP_SPRETEiJ_G0022336) #36	Zbtb22 (MGP_SPRETEiJ_G0022335)	Tapbp (MGP_SPRETEiJ_G0022334) #37	Daxx (MGP_SPRETEiJ_G0022333)	Cd320 (MGP_SPRETEiJ_G0022332)
Ryukyu mouse	MODERN SPECIES	8	Btnl1 (MGP_CAROLIEiJ_G0021457)	Btnl2 (MGP_CAROLIEiJ_G0021456)	H2-Eb2 (MGP_CAROLIEiJ_G0021455) #10	MGP_CAROLIEiJ_G0021454	H2-Aa (MGP_CAROLIEiJ_G0021453)	H2-Ab1 (MGP_CAROLIEiJ_G0021452) #14	H2-Ob (MGP_CAROLIEiJ_G0021451) #15	MGP_CAROLIEiJ_G0021450	Tap2 (MGP_CAROLIEiJ_G0021449) #16	Psmb8 (MGP_CAROLIEiJ_G0021448) #17	Tap1 (MGP_CAROLIEiJ_G0021447) #18	Psmb9 (MGP_CAROLIEiJ_G0021446) #19	MGP_CAROLIEiJ_G0021445 #20	MGP_CAROLIEiJ_G0021444 #20	H2-DMa (MGP_CAROLIEiJ_G0021443) #21	Brd2 (MGP_CAROLIEiJ_G0021442) #22	H2-Oa (MGP_CAROLIEiJ_G0021441) #24	Col11a2 (MGP_CAROLIEiJ_G0021440) #27	Rxrb (MGP_CAROLIEiJ_G0021439) #28	Slc39a7 (MGP_CAROLIEiJ_G0021438) #29	Hsd17b8 (MGP_CAROLIEiJ_G0021437) #30	Ring1 (MGP_CAROLIEiJ_G0021436) #31	MGP_CAROLIEiJ_G0021435	MGP_CAROLIEiJ_G0021434	MGP_CAROLIEiJ_G0021432	MGP_CAROLIEiJ_G0021431	MGP_CAROLIEiJ_G0021430	MGP_CAROLIEiJ_G0021429	Rps18 (MGP_CAROLIEiJ_G0021428) #33	B3galt4 (MGP_CAROLIEiJ_G0021427)	Wdr46 (MGP_CAROLIEiJ_G0021426) #34
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020455	Tsbp1 (MGP_PahariEiJ_G0020454)	Btnl1 (MGP_PahariEiJ_G0020453)	Btnl2 (MGP_PahariEiJ_G0020452)	H2-Eb2 (MGP_PahariEiJ_G0020451) #10	MGP_PahariEiJ_G0020450	H2-Aa (MGP_PahariEiJ_G0020449)	H2-Ab1 (MGP_PahariEiJ_G0020448) #14	H2-Ob (MGP_PahariEiJ_G0020447) #15	MGP_PahariEiJ_G0020446	Tap2 (MGP_PahariEiJ_G0020445) #16	Psmb8 (MGP_PahariEiJ_G0020444) #17	Tap1 (MGP_PahariEiJ_G0020443) #18	Psmb9 (MGP_PahariEiJ_G0020442) #19	H2-DMa (MGP_PahariEiJ_G0020441) #21	Brd2 (MGP_PahariEiJ_G0020440) #22	H2-Oa (MGP_PahariEiJ_G0020439) #24	Col11a2 (MGP_PahariEiJ_G0020438) #27	Rxrb (MGP_PahariEiJ_G0020437) #28	Slc39a7 (MGP_PahariEiJ_G0020436) #29	Hsd17b8 (MGP_PahariEiJ_G0020435) #30	Ring1 (MGP_PahariEiJ_G0020434) #31	MGP_PahariEiJ_G0020433 #33	B3galt4 (MGP_PahariEiJ_G0020432)	Wdr46 (MGP_PahariEiJ_G0020431) #34	Pfdn6 (MGP_PahariEiJ_G0020430) #35	Rgl2 (MGP_PahariEiJ_G0020429) #36	Zbtb22 (MGP_PahariEiJ_G0020428)	Tapbp (MGP_PahariEiJ_G0020427) #37	Daxx (MGP_PahariEiJ_G0020426)	Cd320 (MGP_PahariEiJ_G0020425)
Rat	MODERN SPECIES	12	Tsbp1 (ENSRNOG00000039398)	Btnl3 (ENSRNOG00000039396)	Btnl2 (ENSRNOG00000028541)	RT1-Da (ENSRNOG00000032844) #7	RT1-Db2 (ENSRNOG00000030431)	RT1-Db1 (ENSRNOG00000033215)	RT1-Ba (ENSRNOG00000000451)	RT1-Bb (ENSRNOG00000032708) #14	RT1-DOb (ENSRNOG00000000454) #15	Tap2 (ENSRNOG00000000455) #16	Psmb8 (ENSRNOG00000000456) #17	Tap1 (ENSRNOG00000000457) #18	Psmb9 (ENSRNOG00000000459) #19	RT1-DMb (ENSRNOG00000049491) #20	RT1-DMa (ENSRNOG00000066773) #21	Brd2 (ENSRNOG00000000461) #22	RT1-DOa (ENSRNOG00000026762) #24	RT1-Ha (ENSRNOG00000045908) #25	RT1-Hb-ps1 (ENSRNOG00000061936) #26	Col11a2 (ENSRNOG00000000463) #27	Rxrb (ENSRNOG00000000464) #28	Slc39a7 (ENSRNOG00000000465) #29	Hsd17b8 (ENSRNOG00000000466) #30	Ring1 (ENSRNOG00000000467) #31	Vps52 (ENSRNOG00000000470) #32	ENSRNOG00000062487	ENSRNOG00000069209	B3galt4 (ENSRNOG00000000471)	Wdr46 (ENSRNOG00000031171) #34	Pfdn6 (ENSRNOG00000000473) #35	Rgl2 (ENSRNOG00000000474) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	369											Psmb8 (ENSNGAG00000001376) #17	Tap1 (ENSNGAG00000012692) #18	Psmb9 (ENSNGAG00000022287) #19	ENSNGAG00000015143 #20	H2-DMa (ENSNGAG00000022770) #21	Brd2 (ENSNGAG00000022459) #22	H2-Oa (ENSNGAG00000015259) #24	ENSNGAG00000014641 #26
Lesser Egyptian jerboa	MODERN SPECIES	41								H2-Ob (ENSJJAG00000022338) #15	ENSJJAG00000003836	Tap2 (ENSJJAG00000004300) #16	Psmb8 (ENSJJAG00000023598) #17	Tap1 (ENSJJAG00000022861) #18	Psmb9 (ENSJJAG00000022884) #19	ENSJJAG00000004664 #20	H2-DMa (ENSJJAG00000012555) #21	Brd2 (ENSJJAG00000010183) #22	H2-Oa (ENSJJAG00000000542) #24	ENSJJAG00000023713 #26	Col11a2 (ENSJJAG00000010448) #27	Rxrb (ENSJJAG00000004710) #28	Slc39a7 (ENSJJAG00000014121) #29	Hsd17b8 (ENSJJAG00000021794) #30	Ring1 (ENSJJAG00000022246) #31	Vps52 (ENSJJAG00000020884) #32	Rps18 (ENSJJAG00000018899) #33	Wdr46 (ENSJJAG00000021960) #34	Pfdn6 (ENSJJAG00000009874) #35	ENSJJAG00000023644	ENSJJAG00000021860 #36	ENSJJAG00000000854 #37	Daxx (ENSJJAG00000022212)
Kangaroo rat	MODERN SPECIES	519	Gpsm3 (ENSDORG00000025609)	ENSDORG00000009936	ENSDORG00000028297	H2-Ea (ENSDORG00000014782) #7	ENSDORG00000024908	ENSDORG00000029602 #10	ENSDORG00000006991 #10	ENSDORG00000011904	ENSDORG00000008310 #15	Tap2 (ENSDORG00000008311) #16	Psmb8 (ENSDORG00000028592) #17	Tap1 (ENSDORG00000029698) #18	Psmb9 (ENSDORG00000006231) #19	ENSDORG00000005172 #20	ENSDORG00000005173 #21	Brd2 (ENSDORG00000004497) #22	H2-Oa (ENSDORG00000004499) #24	ENSDORG00000004500 #25	ENSDORG00000024606 #26	Col11a2 (ENSDORG00000013815) #27	Rxrb (ENSDORG00000013816) #28	Slc39a7 (ENSDORG00000013818) #29	Hsd17b8 (ENSDORG00000013819) #30	Ring1 (ENSDORG00000013820) #31	Vps52 (ENSDORG00000013822) #32	ENSDORG00000013825 #33	B3galt4 (ENSDORG00000013826)	Wdr46 (ENSDORG00000013827) #34	ENSDORG00000013828 #35	Rgl2 (ENSDORG00000013829) #36	Tapbp (ENSDORG00000013835) #37
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000162892 #13	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00940000162450	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00390000012691.c.b.p #33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00980000198621	ENSGT00940000162450	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d.o ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Long-tailed chinchilla	MODERN SPECIES	144	ENSCLAG00000011744	ENSCLAG00000015677	BTNL2 (ENSCLAG00000007142)	HLA-DRA (ENSCLAG00000009768) #7	ENSCLAG00000013098	ENSCLAG00000016042	ENSCLAG00000009507	HLA-DQB2 (ENSCLAG00000011869) #14	HLA-DOB (ENSCLAG00000011735) #15	TAP2 (ENSCLAG00000012654) #16	PSMB8 (ENSCLAG00000006990) #17	TAP1 (ENSCLAG00000008052) #18	PSMB9 (ENSCLAG00000007918) #19	HLA-DMB (ENSCLAG00000008468) #20	HLA-DMA (ENSCLAG00000014679) #21	BRD2 (ENSCLAG00000009750) #22	HLA-DOA (ENSCLAG00000011531) #24	HLA-DPB1 (ENSCLAG00000013126) #26	HLA-DPA1 (ENSCLAG00000010668) #25	COL11A2 (ENSCLAG00000007783) #27	RXRB (ENSCLAG00000013699) #28	SLC39A7 (ENSCLAG00000014475) #29	HSD17B8 (ENSCLAG00000007885) #30	RING1 (ENSCLAG00000009149) #31	VPS52 (ENSCLAG00000008115) #32	RPS18 (ENSCLAG00000008982) ##33	WDR46 (ENSCLAG00000007512) #34	PFDN6 (ENSCLAG00000010475) #35	RGL2 (ENSCLAG00000009780) #36	TAPBP (ENSCLAG00000010992) #37	DAXX (ENSCLAG00000010016)
Degu	MODERN SPECIES	46	ENSODEG00000017653	ENSODEG00000017401	ENSODEG00000017414	ENSODEG00000017398	ENSODEG00000017435 #10	ENSODEG00000017402 #10	ENSODEG00000017510	ENSODEG00000017249 #14	HLA-DOB (ENSODEG00000017495) #15	TAP1 (ENSODEG00000017484) #18	PSMB9 (ENSODEG00000017656) #19	TAP2 (ENSODEG00000017797) #16	PSMB8 (ENSODEG00000017662) #17	HLA-DMB (ENSODEG00000017802) #20	ENSODEG00000017381 #21	BRD2 (ENSODEG00000017239) #22	HLA-DOA (ENSODEG00000017569) #24	HLA-DPA1 (ENSODEG00000017716) #25	COL11A2 (ENSODEG00000017513) #27	RXRB (ENSODEG00000017146) #28	SLC39A7 (ENSODEG00000017361) #29	HSD17B8 (ENSODEG00000017486) #30	RING1 (ENSODEG00000017691) #31	VPS52 (ENSODEG00000017744) #32	ENSODEG00000017344 ##33	B3GALT4 (ENSODEG00000017281)	WDR46 (ENSODEG00000017342) #34	ENSODEG00000017649 #35	RGL2 (ENSODEG00000017326) #36	TAPBP (ENSODEG00000017301) #37	DAXX (ENSODEG00000017044)
Guinea pig	MODERN SPECIES	15	ENSCPOG00000023019	BTNL2 (ENSCPOG00000004277)	HLA-DRA (ENSCPOG00000012309) #7	ENSCPOG00000036465	ENSCPOG00000003574 #10	ENSCPOG00000040083 #10	ENSCPOG00000014463 #13	HLA-DQB2 (ENSCPOG00000038606) #14	HLA-DOB (ENSCPOG00000033895) #15	TAP2 (ENSCPOG00000038951) #16	PSMB8 (ENSCPOG00000000729) #17	TAP1 (ENSCPOG00000026988) #18	PSMB9 (ENSCPOG00000002121) #19	HLA-DMB (ENSCPOG00000002810) #20	HLA-DMA (ENSCPOG00000015044) #21	BRD2 (ENSCPOG00000002811) #22	HLA-DOA (ENSCPOG00000012562) #24	ENSCPOG00000002427 #25	ENSCPOG00000032859 #26	ENSCPOG00000024142 #26	ENSCPOG00000035477 #25	COL11A2 (ENSCPOG00000020466) #27	RXRB (ENSCPOG00000013936) #28	SLC39A7 (ENSCPOG00000023790) #29	HSD17B8 (ENSCPOG00000013940) #30	RING1 (ENSCPOG00000013943) #31	VPS52 (ENSCPOG00000013947) #32	RPS18 (ENSCPOG00000019675) #33	B3GALT4 (ENSCPOG00000012731)	WDR46 (ENSCPOG00000012733) #34	PFDN6 (ENSCPOG00000019520) #35
Naked mole-rat female	MODERN SPECIES	4	GPSM3 (ENSHGLG00000012807)	HLA-DRA (ENSHGLG00000012243) #7	ENSHGLG00000012074 #10	ENSHGLG00000011873 #10	ENSHGLG00000011613 #10	ENSHGLG00000011398 #13	ENSHGLG00000043086	HLA-DQB2 (ENSHGLG00000038840) #14	HLA-DOB (ENSHGLG00000016652) #15	TAP2 (ENSHGLG00000019356) #16	PSMB8 (ENSHGLG00000017087) #17	TAP1 (ENSHGLG00000017081) #18	PSMB9 (ENSHGLG00000036914) #19	HLA-DMB (ENSHGLG00000017060) #20	HLA-DMA (ENSHGLG00000017048) #21	BRD2 (ENSHGLG00000019334) #22	HLA-DOA (ENSHGLG00000019255) #24	HLA-DPA1 (ENSHGLG00000019266) #25	HLA-DPB1 (ENSHGLG00000019389) #26	COL11A2 (ENSHGLG00000018531) #27	RXRB (ENSHGLG00000018456) #28	SLC39A7 (ENSHGLG00000018434) #29	HSD17B8 (ENSHGLG00000019497) #30	RING1 (ENSHGLG00000019474) #31	VPS52 (ENSHGLG00000017226) #32	B3GALT4 (ENSHGLG00000046221)	WDR46 (ENSHGLG00000017190) #34	PFDN6 (ENSHGLG00000017170) #35	RGL2 (ENSHGLG00000017158) #36	TAPBP (ENSHGLG00000017138) #37	ZBTB22 (ENSHGLG00000017146)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b #10	ENSGT00940000155371	ENSGT00940000154993.k.a #10	ENSGT00940000161821	ENSGT00940000154723.b #14	ENSGT00940000162353 #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Eurasian red squirrel	MODERN SPECIES	16	HLA-DRA (ENSSVLG00005007588) #7	ENSSVLG00005007546 #10	ENSSVLG00005007511	ENSSVLG00005007482 #10	ENSSVLG00005007455	HLA-DQB2 (ENSSVLG00005007368) #14	ENSSVLG00005007173	ENSSVLG00005006864 #14	HLA-DOB (ENSSVLG00005006746) #15	TAP2 (ENSSVLG00005006696) #16	PSMB8 (ENSSVLG00005006647) #17	TAP1 (ENSSVLG00005006618) #18	PSMB9 (ENSSVLG00005006563) #19	HLA-DMB (ENSSVLG00005006515) #20	HLA-DMA (ENSSVLG00005006465) #21	BRD2 (ENSSVLG00005006374) #22	HLA-DOA (ENSSVLG00005006335) #24	HLA-DPA1 (ENSSVLG00005006304) #25	HLA-DPB1 (ENSSVLG00005006269) #26	COL11A2 (ENSSVLG00005005202) #27	RXRB (ENSSVLG00005004952) #28	SLC39A7 (ENSSVLG00005004925) #29	HSD17B8 (ENSSVLG00005004902) #30	RING1 (ENSSVLG00005004804) #31	ENSSVLG00005004778	VPS52 (ENSSVLG00005004757) #32	RPS18 (ENSSVLG00005004721) #33	B3GALT4 (ENSSVLG00005004704)	WDR46 (ENSSVLG00005004694) #34	ENSSVLG00005004670 #35	RGL2 (ENSSVLG00005004647) #36
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000162484	ENSGT00940000160997 #7	ENSGT00940000154993.k.b #10	ENSGT00940000154993.k.a #10	ENSGT00940000161821.k	ENSGT00940000154723.b #14	ENSGT00940000161821.l.a	ENSGT00940000162353.i #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Marmotini_b	ANCESTRAL SPECIES	8								ENSGT00940000162353.i #15	ENSGT00860000136204	ENSGT00940000160499 #16	ENSGT00940000157293 #17	ENSGT00940000159023 #18	ENSGT00940000159897 #19	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #24	ENSGT00940000162498 #25	ENSGT00940000162390 #26	ENSGT00940000159762 #27	ENSGT00940000159208.B #28	ENSGT00940000160076 #29	ENSGT00940000160668 #30	ENSGT00940000161022 #31	ENSGT00390000008815 #32	ENSGT00390000012691.d ##33	ENSGT00940000161798	ENSGT00390000007075 #34	ENSGT00390000010512 #35	ENSGT00940000161403 #36	ENSGT00940000159200 #37
Arctic ground squirrel	MODERN SPECIES	25														HLA-DMB (ENSUPAG00010005014) #20	HLA-DMA (ENSUPAG00010005022) #21	BRD2 (ENSUPAG00010005033) #22	HLA-DOA (ENSUPAG00010005068) #24	HLA-DPB1 (ENSUPAG00010005123) #26	HLA-DPA1 (ENSUPAG00010012558) #25	COL11A2 (ENSUPAG00010012591) #27	RXRB (ENSUPAG00010013376) #28	SLC39A7 (ENSUPAG00010013405) #29	HSD17B8 (ENSUPAG00010013412) #30	RING1 (ENSUPAG00010013424) #31	VPS52 (ENSUPAG00010013433) #32	ENSUPAG00010013506 ##33	B3GALT4 (ENSUPAG00010013513)	WDR46 (ENSUPAG00010013516) #34	PFDN6 (ENSUPAG00010013562) #35	RGL2 (ENSUPAG00010013583) #36	TAPBP (ENSUPAG00010013596) #37
Squirrel	MODERN SPECIES	76							ENSSTOG00000028098	HLA-DOB (ENSSTOG00000003405) #15	ENSSTOG00000030715	TAP2 (ENSSTOG00000003413) #16	PSMB8 (ENSSTOG00000019724) #17	TAP1 (ENSSTOG00000003451) #18	PSMB9 (ENSSTOG00000003475) #19	HLA-DMB (ENSSTOG00000019821) #20	HLA-DMA (ENSSTOG00000009246) #21	BRD2 (ENSSTOG00000010807) #22	HLA-DOA (ENSSTOG00000010820) #24	HLA-DPA1 (ENSSTOG00000003558) #25	HLA-DPB1 (ENSSTOG00000003567) #26	COL11A2 (ENSSTOG00000003578) #27	RXRB (ENSSTOG00000027099) #28	SLC39A7 (ENSSTOG00000014304) #29	HSD17B8 (ENSSTOG00000020853) #30	RING1 (ENSSTOG00000026166) #31	VPS52 (ENSSTOG00000002397) #32	ENSSTOG00000002417 ##33	B3GALT4 (ENSSTOG00000024877)	WDR46 (ENSSTOG00000002433) #34	PFDN6 (ENSSTOG00000027428) #35	RGL2 (ENSSTOG00000024728) #36	TAPBP (ENSSTOG00000025004) #37
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	24	ENSMMMG00000023121	RAB8A (ENSMMMG00000023118)	TPM4 (ENSMMMG00000022621)	ENSMMMG00000022612	ENSMMMG00000022610	ENSMMMG00000022564	ENSMMMG00000022557	CYP4F2 (ENSMMMG00000022533)	CYP4F8 (ENSMMMG00000022511)	CYP4F22 (ENSMMMG00000022504)	PGLYRP2 (ENSMMMG00000022496)	RASAL3 (ENSMMMG00000022474)	ENSMMMG00000022459	AKAP8L (ENSMMMG00000022438)	AKAP8 (ENSMMMG00000022416)	ENSMMMG00000022411 #22	ENSMMMG00000022407	EPHX3 (ENSMMMG00000022401)	NOTCH3 (ENSMMMG00000022356)	ENSMMMG00000022351	ILVBL (ENSMMMG00000022300)	SYDE1 (ENSMMMG00000022294)	OR1I1 (ENSMMMG00000022293)	CASP14 (ENSMMMG00000022289)	CCDC105 (ENSMMMG00000022286)	SLC1A6 (ENSMMMG00000022279)	ENSMMMG00000022278	ENSMMMG00000022277	ENSMMMG00000022259	ENSMMMG00000022258	ENSMMMG00000022253
Alpin marmot	MODERN SPECIES	20	ENSMMMG00000018777 #10	ENSMMMG00000018780 #10	ENSMMMG00000018785	ENSMMMG00000018797	ENSMMMG00000018808 #14	ENSMMMG00000020395	ENSMMMG00000024056 #14	ENSMMMG00000024215	HLA-DOB (ENSMMMG00000024217) #15	TAP2 (ENSMMMG00000024218) #16	PSMB8 (ENSMMMG00000024220) #17	TAP1 (ENSMMMG00000024221) #18	PSMB9 (ENSMMMG00000024222) #19	HLA-DMB (ENSMMMG00000024223) #20	HLA-DMA (ENSMMMG00000024224) #21	BRD2 (ENSMMMG00000024225) #22	HLA-DOA (ENSMMMG00000024226) #24	HLA-DPA1 (ENSMMMG00000024227) #25	HLA-DPB1 (ENSMMMG00000024228) #26	COL11A2 (ENSMMMG00000024229) #27	RXRB (ENSMMMG00000024230) #28	SLC39A7 (ENSMMMG00000024231) #29	HSD17B8 (ENSMMMG00000024232) #30	RING1 (ENSMMMG00000024233) #31	VPS52 (ENSMMMG00000024234) #32	ENSMMMG00000024235 ##33	B3GALT4 (ENSMMMG00000024236)	WDR46 (ENSMMMG00000024237) #34	PFDN6 (ENSMMMG00000024238) #35	RGL2 (ENSMMMG00000024239) #36	TAPBP (ENSMMMG00000024240) #37