Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Glires ANCESTRAL SPECIES 5 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ENSGT00940000155371 #12 ENSGT00940000154993.l ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 ENSGT00940000161403 #37 Murinae ANCESTRAL SPECIES 18 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Rat MODERN SPECIES 12 Tsbp1 (ENSRNOG00000039398) #7 Btnl3 (ENSRNOG00000039396) #8 Btnl2 (ENSRNOG00000028541) #9 RT1-Da (ENSRNOG00000032844) #10 RT1-Db2 (ENSRNOG00000030431) #11 RT1-Db1 (ENSRNOG00000033215) #12 RT1-Ba (ENSRNOG00000000451) #13 RT1-Bb (ENSRNOG00000032708) #14 RT1-DOb (ENSRNOG00000000454) #15 Tap2 (ENSRNOG00000000455) #16 Psmb8 (ENSRNOG00000000456) #17 Tap1 (ENSRNOG00000000457) #18 Psmb9 (ENSRNOG00000000459) #19 RT1-DMb (ENSRNOG00000049491) #20 RT1-DMa (ENSRNOG00000066773) #21 Brd2 (ENSRNOG00000000461) #22 RT1-DOa (ENSRNOG00000026762) #23 RT1-Ha (ENSRNOG00000045908) #24 RT1-Hb-ps1 (ENSRNOG00000061936) #25 Col11a2 (ENSRNOG00000000463) #26 Rxrb (ENSRNOG00000000464) #27 Slc39a7 (ENSRNOG00000000465) #28 Hsd17b8 (ENSRNOG00000000466) #29 Ring1 (ENSRNOG00000000467) #30 Vps52 (ENSRNOG00000000470) #31 ENSRNOG00000062487 #32 ENSRNOG00000069209 #33 B3galt4 (ENSRNOG00000000471) #34 Wdr46 (ENSRNOG00000031171) #35 Pfdn6 (ENSRNOG00000000473) #36 Rgl2 (ENSRNOG00000000474) #37 Mus ANCESTRAL SPECIES 16 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Mus_A ANCESTRAL SPECIES 10 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Mus_B ANCESTRAL SPECIES 9 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512.`b #36 ENSGT00940000161403 #37 ENSGT00940000159200 Mouse MODERN SPECIES 8 Btnl1 (ENSMUSG00000062638) #8 Btnl2 (ENSMUSG00000024340) #9 H2-Ea (ENSMUSG00000036322) #10 H2-Eb2 (ENSMUSG00000067341) H2-Eb1 (ENSMUSG00000060586) #12 H2-Aa (ENSMUSG00000036594) #13 H2-Ab1 (ENSMUSG00000073421) #14 H2-Ob (ENSMUSG00000041538) #15 Tap2 (ENSMUSG00000024339) #16 Psmb8 (ENSMUSG00000024338) #17 Tap1 (ENSMUSG00000037321) #18 Psmb9 (ENSMUSG00000096727) #19 H2-DMb1 (ENSMUSG00000079547) #20 H2-DMb2 (ENSMUSG00000037548) #20 H2-DMa (ENSMUSG00000037649) #21 Brd2 (ENSMUSG00000024335) #22 H2-Oa (ENSMUSG00000024334) #23 Col11a2 (ENSMUSG00000024330) #26 Rxrb (ENSMUSG00000039656) #27 Slc39a7 (ENSMUSG00000024327) #28 Hsd17b8 (ENSMUSG00000073422) #29 Ring1 (ENSMUSG00000024325) #30 H2-K1 (ENSMUSG00000061232) Vps52 (ENSMUSG00000024319) #31 Rps18 (ENSMUSG00000008668) B3galt4 (ENSMUSG00000067370) #34 Wdr46 (ENSMUSG00000024312) #35 Pfdn6 (ENSMUSG00000024309) #36 Rgl2 (ENSMUSG00000041354) #37 Zbtb22 (ENSMUSG00000051390) Tapbp (ENSMUSG00000024308) Mus_C ANCESTRAL SPECIES 9 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512.`b #36 ENSGT00940000161403 #37 ENSGT00940000159200 Steppe mouse MODERN SPECIES 2564 Btnl1 (ENSMSIG00000010748) #8 Btnl2 (ENSMSIG00000010760) #9 H2-Ea (ENSMSIG00000010776) #10 H2-Eb2 (ENSMSIG00000010788) ENSMSIG00000010807 #12 H2-Aa (ENSMSIG00000010823) #13 ENSMSIG00000010843 #14 H2-Ob (ENSMSIG00000010868) #15 Tap2 (ENSMSIG00000010919) #16 ENSMSIG00000010972 Psmb8 (ENSMSIG00000010986) #17 ENSMSIG00000011012 #18 Psmb9 (ENSMSIG00000011042) #19 H2-DMb1 (ENSMSIG00000011055) #20 H2-DMa (ENSMSIG00000011088) #21 Brd2 (ENSMSIG00000011118) #22 H2-Oa (ENSMSIG00000011198) #23 ENSMSIG00000011214 #24 Col11a2 (ENSMSIG00000011347) #26 Rxrb (ENSMSIG00000012091) #27 Slc39a7 (ENSMSIG00000012137) #28 ENSMSIG00000012153 #29 Ring1 (ENSMSIG00000012190) #30 ENSMSIG00000012243 ENSMSIG00000012249 Vps52 (ENSMSIG00000012295) #31 Rps18 (ENSMSIG00000012382) B3galt4 (ENSMSIG00000012406) #34 Wdr46 (ENSMSIG00000012419) #35 Pfdn6 (ENSMSIG00000012469) #36 Rgl2 (ENSMSIG00000012505) #37 spretus MODERN SPECIES 8 Btnl1 (MGP_SPRETEiJ_G0022363) #8 Btnl2 (MGP_SPRETEiJ_G0022362) #9 H2-Eb2 (MGP_SPRETEiJ_G0022361) MGP_SPRETEiJ_G0022360 #12 H2-Aa (MGP_SPRETEiJ_G0022359) #13 H2-Ab1 (MGP_SPRETEiJ_G0022358) #14 H2-Ob (MGP_SPRETEiJ_G0022357) #15 MGP_SPRETEiJ_G0022356 Tap2 (MGP_SPRETEiJ_G0022355) #16 Psmb8 (MGP_SPRETEiJ_G0022354) #17 Tap1 (MGP_SPRETEiJ_G0022353) #18 Psmb9 (MGP_SPRETEiJ_G0022352) #19 H2-DMb2 (MGP_SPRETEiJ_G0022351) #20 MGP_SPRETEiJ_G0022350 #20 H2-DMa (MGP_SPRETEiJ_G0022349) #21 Brd2 (MGP_SPRETEiJ_G0022348) #22 H2-Oa (MGP_SPRETEiJ_G0022347) #23 Col11a2 (MGP_SPRETEiJ_G0022346) #26 Rxrb (MGP_SPRETEiJ_G0022345) #27 Slc39a7 (MGP_SPRETEiJ_G0022344) #28 Hsd17b8 (MGP_SPRETEiJ_G0022343) #29 Ring1 (MGP_SPRETEiJ_G0022342) #30 MGP_SPRETEiJ_G0022340 B3galt4 (MGP_SPRETEiJ_G0022339) #34 Wdr46 (MGP_SPRETEiJ_G0022338) #35 Pfdn6 (MGP_SPRETEiJ_G0022337) #36 Rgl2 (MGP_SPRETEiJ_G0022336) #37 Zbtb22 (MGP_SPRETEiJ_G0022335) Tapbp (MGP_SPRETEiJ_G0022334) Daxx (MGP_SPRETEiJ_G0022333) Cd320 (MGP_SPRETEiJ_G0022332) Ryukyu mouse MODERN SPECIES 8 Btnl1 (MGP_CAROLIEiJ_G0021457) #8 Btnl2 (MGP_CAROLIEiJ_G0021456) #9 H2-Eb2 (MGP_CAROLIEiJ_G0021455) MGP_CAROLIEiJ_G0021454 #12 H2-Aa (MGP_CAROLIEiJ_G0021453) #13 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #14 H2-Ob (MGP_CAROLIEiJ_G0021451) #15 MGP_CAROLIEiJ_G0021450 Tap2 (MGP_CAROLIEiJ_G0021449) #16 Psmb8 (MGP_CAROLIEiJ_G0021448) #17 Tap1 (MGP_CAROLIEiJ_G0021447) #18 Psmb9 (MGP_CAROLIEiJ_G0021446) #19 MGP_CAROLIEiJ_G0021445 #20 MGP_CAROLIEiJ_G0021444 #20 H2-DMa (MGP_CAROLIEiJ_G0021443) #21 Brd2 (MGP_CAROLIEiJ_G0021442) #22 H2-Oa (MGP_CAROLIEiJ_G0021441) #23 Col11a2 (MGP_CAROLIEiJ_G0021440) #26 Rxrb (MGP_CAROLIEiJ_G0021439) #27 Slc39a7 (MGP_CAROLIEiJ_G0021438) #28 Hsd17b8 (MGP_CAROLIEiJ_G0021437) #29 Ring1 (MGP_CAROLIEiJ_G0021436) #30 MGP_CAROLIEiJ_G0021435 MGP_CAROLIEiJ_G0021434 MGP_CAROLIEiJ_G0021432 MGP_CAROLIEiJ_G0021431 MGP_CAROLIEiJ_G0021430 MGP_CAROLIEiJ_G0021429 Rps18 (MGP_CAROLIEiJ_G0021428) B3galt4 (MGP_CAROLIEiJ_G0021427) #34 Wdr46 (MGP_CAROLIEiJ_G0021426) #35 Shrew mouse MODERN SPECIES 9 MGP_PahariEiJ_G0020455 Tsbp1 (MGP_PahariEiJ_G0020454) #7 Btnl1 (MGP_PahariEiJ_G0020453) #8 Btnl2 (MGP_PahariEiJ_G0020452) #9 H2-Eb2 (MGP_PahariEiJ_G0020451) MGP_PahariEiJ_G0020450 #12 H2-Aa (MGP_PahariEiJ_G0020449) #13 H2-Ab1 (MGP_PahariEiJ_G0020448) #14 H2-Ob (MGP_PahariEiJ_G0020447) #15 MGP_PahariEiJ_G0020446 Tap2 (MGP_PahariEiJ_G0020445) #16 Psmb8 (MGP_PahariEiJ_G0020444) #17 Tap1 (MGP_PahariEiJ_G0020443) #18 Psmb9 (MGP_PahariEiJ_G0020442) #19 H2-DMa (MGP_PahariEiJ_G0020441) #21 Brd2 (MGP_PahariEiJ_G0020440) #22 H2-Oa (MGP_PahariEiJ_G0020439) #23 Col11a2 (MGP_PahariEiJ_G0020438) #26 Rxrb (MGP_PahariEiJ_G0020437) #27 Slc39a7 (MGP_PahariEiJ_G0020436) #28 Hsd17b8 (MGP_PahariEiJ_G0020435) #29 Ring1 (MGP_PahariEiJ_G0020434) #30 MGP_PahariEiJ_G0020433 B3galt4 (MGP_PahariEiJ_G0020432) #34 Wdr46 (MGP_PahariEiJ_G0020431) #35 Pfdn6 (MGP_PahariEiJ_G0020430) #36 Rgl2 (MGP_PahariEiJ_G0020429) #37 Zbtb22 (MGP_PahariEiJ_G0020428) Tapbp (MGP_PahariEiJ_G0020427) Daxx (MGP_PahariEiJ_G0020426) Cd320 (MGP_PahariEiJ_G0020425) Cricetidae ANCESTRAL SPECIES 9 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT01030000234972 Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000154993.k.b.b ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 Chinese hamster chok1gshd MODERN SPECIES 303 ENSCGRG00001001955 #12 Btnl1 (ENSCGRG00001017970) #8 Btnl2 (ENSCGRG00001016923) #9 H2-Ea (ENSCGRG00001015369) #10 ENSCGRG00001015049 #12 ENSCGRG00001021279 H2-Aa (ENSCGRG00001020824) #13 H2-Ab1 (ENSCGRG00001020630) #14 H2-Ob (ENSCGRG00001020078) #15 ENSCGRG00001019448 Psmb8 (ENSCGRG00001018009) #17 Tap1 (ENSCGRG00001009114) #18 Psmb9 (ENSCGRG00001007415) #19 ENSCGRG00001001555 #20 H2-DMa (ENSCGRG00001000682) #21 Brd2 (ENSCGRG00001018148) #22 H2-Oa (ENSCGRG00001013616) #23 ENSCGRG00001009189 #24 ENSCGRG00001007476 #25 Col11a2 (ENSCGRG00001016209) #26 Rxrb (ENSCGRG00001000192) #27 Slc39a7 (ENSCGRG00001022298) #28 Hsd17b8 (ENSCGRG00001003834) #29 Ring1 (ENSCGRG00001001992) #30 ENSCGRG00001000484 ENSCGRG00001000045 ENSCGRG00001001839 ENSCGRG00001020054 ENSCGRG00001018024 ENSCGRG00001013282 ENSCGRG00001018149 Golden Hamster MODERN SPECIES 856 Notch4 (ENSMAUG00000015895) ENSMAUG00000009410 ENSMAUG00000015609 Btnl1 (ENSMAUG00000016817) #8 Btnl2 (ENSMAUG00000003530) #9 H2-Eb2 (ENSMAUG00000018151) H2-Aa (ENSMAUG00000003363) #13 H2-Ab1 (ENSMAUG00000020395) #14 H2-Ob (ENSMAUG00000007698) #15 Tap2 (ENSMAUG00000015081) #16 Psmb8 (ENSMAUG00000003396) #17 Tap1 (ENSMAUG00000017718) #18 Psmb9 (ENSMAUG00000007584) #19 ENSMAUG00000008923 #20 H2-DMa (ENSMAUG00000000861) #21 Brd2 (ENSMAUG00000006799) #22 Col11a2 (ENSMAUG00000021348) #26 Rxrb (ENSMAUG00000009043) #27 Slc39a7 (ENSMAUG00000015255) #28 Hsd17b8 (ENSMAUG00000013407) #29 Ring1 (ENSMAUG00000012254) #30 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ENSGT00940000155371 #12 ENSGT00940000154993.l ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Northern American deer mouse MODERN SPECIES 13 Btnl2 (ENSPEMG00000007431) #9 H2-Ea (ENSPEMG00000008261) #10 H2-Eb2 (ENSPEMG00000006456) H2-Eb1 (ENSPEMG00000002889) #12 ENSPEMG00000012679 #13 ENSPEMG00000015401 #14 ENSPEMG00000007095 #13 ENSPEMG00000012719 #14 H2-Ob (ENSPEMG00000001796) #15 Tap2 (ENSPEMG00000010503) #16 Psmb8 (ENSPEMG00000012170) #17 Tap1 (ENSPEMG00000012461) #18 Psmb9 (ENSPEMG00000009609) #19 ENSPEMG00000018040 #20 H2-DMa (ENSPEMG00000013203) #21 Brd2 (ENSPEMG00000018138) #22 H2-Oa (ENSPEMG00000011158) #23 ENSPEMG00000015442 #24 ENSPEMG00000026148 #25 Col11a2 (ENSPEMG00000016918) #26 Rxrb (ENSPEMG00000018454) #27 Slc39a7 (ENSPEMG00000003403) #28 Hsd17b8 (ENSPEMG00000012925) #29 Ring1 (ENSPEMG00000019238) #30 ENSPEMG00000024622 ENSPEMG00000030975 ENSPEMG00000030319 Rps18 (ENSPEMG00000005058) B3galt4 (ENSPEMG00000004762) #34 Wdr46 (ENSPEMG00000019179) #35 Pfdn6 (ENSPEMG00000005228) #36 Prairie vole MODERN SPECIES 352 ENSMOCG00000011431 Btnl1 (ENSMOCG00000018715) #8 Btnl2 (ENSMOCG00000014437) #9 H2-Ea (ENSMOCG00000008786) #10 ENSMOCG00000019721 #12 ENSMOCG00000017941 ENSMOCG00000013355 #13 H2-Ab1 (ENSMOCG00000008439) #14 H2-Ob (ENSMOCG00000008562) #15 Tap2 (ENSMOCG00000022898) #16 Psmb8 (ENSMOCG00000014719) #17 Tap1 (ENSMOCG00000019762) #18 Psmb9 (ENSMOCG00000005369) #19 ENSMOCG00000022309 #20 H2-DMa (ENSMOCG00000002744) #21 Brd2 (ENSMOCG00000016368) #22 H2-Oa (ENSMOCG00000020236) #23 ENSMOCG00000010963 #24 Col11a2 (ENSMOCG00000016852) #26 Rxrb (ENSMOCG00000000374) #27 Slc39a7 (ENSMOCG00000019993) #28 Hsd17b8 (ENSMOCG00000001695) #29 Ring1 (ENSMOCG00000020973) #30 ENSMOCG00000014473 Vps52 (ENSMOCG00000004229) #31 Rps18 (ENSMOCG00000018024) B3galt4 (ENSMOCG00000011979) #34 Wdr46 (ENSMOCG00000014412) #35 Pfdn6 (ENSMOCG00000022424) #36 Rgl2 (ENSMOCG00000022698) #37 Tapbp (ENSMOCG00000010072) Upper Galilee mountains blind mole rat MODERN SPECIES 369 Psmb8 (ENSNGAG00000001376) #17 Tap1 (ENSNGAG00000012692) #18 Psmb9 (ENSNGAG00000022287) #19 ENSNGAG00000015143 #20 H2-DMa (ENSNGAG00000022770) #21 Brd2 (ENSNGAG00000022459) #22 H2-Oa (ENSNGAG00000015259) #23 ENSNGAG00000014641 #25 Lesser Egyptian jerboa MODERN SPECIES 41 H2-Ob (ENSJJAG00000022338) #15 ENSJJAG00000003836 Tap2 (ENSJJAG00000004300) #16 Psmb8 (ENSJJAG00000023598) #17 Tap1 (ENSJJAG00000022861) #18 Psmb9 (ENSJJAG00000022884) #19 ENSJJAG00000004664 #20 H2-DMa (ENSJJAG00000012555) #21 Brd2 (ENSJJAG00000010183) #22 H2-Oa (ENSJJAG00000000542) #23 ENSJJAG00000023713 #25 Col11a2 (ENSJJAG00000010448) #26 Rxrb (ENSJJAG00000004710) #27 Slc39a7 (ENSJJAG00000014121) #28 Hsd17b8 (ENSJJAG00000021794) #29 Ring1 (ENSJJAG00000022246) #30 Vps52 (ENSJJAG00000020884) #31 Rps18 (ENSJJAG00000018899) Wdr46 (ENSJJAG00000021960) #35 Pfdn6 (ENSJJAG00000009874) #36 ENSJJAG00000023644 ENSJJAG00000021860 #37 ENSJJAG00000000854 Daxx (ENSJJAG00000022212) Kangaroo rat MODERN SPECIES 519 Gpsm3 (ENSDORG00000025609) ENSDORG00000009936 ENSDORG00000028297 H2-Ea (ENSDORG00000014782) #10 ENSDORG00000024908 #12 ENSDORG00000029602 ENSDORG00000006991 ENSDORG00000011904 #12 ENSDORG00000008310 #15 Tap2 (ENSDORG00000008311) #16 Psmb8 (ENSDORG00000028592) #17 Tap1 (ENSDORG00000029698) #18 Psmb9 (ENSDORG00000006231) #19 ENSDORG00000005172 #20 ENSDORG00000005173 #21 Brd2 (ENSDORG00000004497) #22 H2-Oa (ENSDORG00000004499) #23 ENSDORG00000004500 #24 ENSDORG00000024606 #25 Col11a2 (ENSDORG00000013815) #26 Rxrb (ENSDORG00000013816) #27 Slc39a7 (ENSDORG00000013818) #28 Hsd17b8 (ENSDORG00000013819) #29 Ring1 (ENSDORG00000013820) #30 Vps52 (ENSDORG00000013822) #31 ENSDORG00000013825 B3galt4 (ENSDORG00000013826) #34 Wdr46 (ENSDORG00000013827) #35 ENSDORG00000013828 #36 Rgl2 (ENSDORG00000013829) #37 Tapbp (ENSDORG00000013835) Rodentia_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000162892 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00940000162450 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00390000012691.c.b.p ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00980000198621 ENSGT00940000162450 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d.o ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Long-tailed chinchilla MODERN SPECIES 144 ENSCLAG00000011744 ENSCLAG00000015677 #8 BTNL2 (ENSCLAG00000007142) #9 HLA-DRA (ENSCLAG00000009768) #10 ENSCLAG00000013098 #12 ENSCLAG00000016042 #12 ENSCLAG00000009507 #13 HLA-DQB2 (ENSCLAG00000011869) #14 HLA-DOB (ENSCLAG00000011735) #15 TAP2 (ENSCLAG00000012654) #16 PSMB8 (ENSCLAG00000006990) #17 TAP1 (ENSCLAG00000008052) #18 PSMB9 (ENSCLAG00000007918) #19 HLA-DMB (ENSCLAG00000008468) #20 HLA-DMA (ENSCLAG00000014679) #21 BRD2 (ENSCLAG00000009750) #22 HLA-DOA (ENSCLAG00000011531) #23 HLA-DPB1 (ENSCLAG00000013126) #25 HLA-DPA1 (ENSCLAG00000010668) #24 COL11A2 (ENSCLAG00000007783) #26 RXRB (ENSCLAG00000013699) #27 SLC39A7 (ENSCLAG00000014475) #28 HSD17B8 (ENSCLAG00000007885) #29 RING1 (ENSCLAG00000009149) #30 VPS52 (ENSCLAG00000008115) #31 RPS18 (ENSCLAG00000008982) WDR46 (ENSCLAG00000007512) #35 PFDN6 (ENSCLAG00000010475) #36 RGL2 (ENSCLAG00000009780) #37 TAPBP (ENSCLAG00000010992) DAXX (ENSCLAG00000010016) Degu MODERN SPECIES 46 ENSODEG00000017653 ENSODEG00000017401 ENSODEG00000017414 #9 ENSODEG00000017398 ENSODEG00000017435 ENSODEG00000017402 ENSODEG00000017510 #13 ENSODEG00000017249 #14 HLA-DOB (ENSODEG00000017495) #15 TAP1 (ENSODEG00000017484) #18 PSMB9 (ENSODEG00000017656) #19 TAP2 (ENSODEG00000017797) #16 PSMB8 (ENSODEG00000017662) #17 HLA-DMB (ENSODEG00000017802) #20 ENSODEG00000017381 #21 BRD2 (ENSODEG00000017239) #22 HLA-DOA (ENSODEG00000017569) #23 HLA-DPA1 (ENSODEG00000017716) #24 COL11A2 (ENSODEG00000017513) #26 RXRB (ENSODEG00000017146) #27 SLC39A7 (ENSODEG00000017361) #28 HSD17B8 (ENSODEG00000017486) #29 RING1 (ENSODEG00000017691) #30 VPS52 (ENSODEG00000017744) #31 ENSODEG00000017344 B3GALT4 (ENSODEG00000017281) #34 WDR46 (ENSODEG00000017342) #35 ENSODEG00000017649 #36 RGL2 (ENSODEG00000017326) #37 TAPBP (ENSODEG00000017301) DAXX (ENSODEG00000017044) Guinea pig MODERN SPECIES 15 ENSCPOG00000023019 #8 BTNL2 (ENSCPOG00000004277) #9 HLA-DRA (ENSCPOG00000012309) #10 ENSCPOG00000036465 #12 ENSCPOG00000003574 ENSCPOG00000040083 ENSCPOG00000014463 HLA-DQB2 (ENSCPOG00000038606) #14 HLA-DOB (ENSCPOG00000033895) #15 TAP2 (ENSCPOG00000038951) #16 PSMB8 (ENSCPOG00000000729) #17 TAP1 (ENSCPOG00000026988) #18 PSMB9 (ENSCPOG00000002121) #19 HLA-DMB (ENSCPOG00000002810) #20 HLA-DMA (ENSCPOG00000015044) #21 BRD2 (ENSCPOG00000002811) #22 HLA-DOA (ENSCPOG00000012562) #23 ENSCPOG00000002427 #24 ENSCPOG00000032859 #25 ENSCPOG00000024142 #25 ENSCPOG00000035477 #24 COL11A2 (ENSCPOG00000020466) #26 RXRB (ENSCPOG00000013936) #27 SLC39A7 (ENSCPOG00000023790) #28 HSD17B8 (ENSCPOG00000013940) #29 RING1 (ENSCPOG00000013943) #30 VPS52 (ENSCPOG00000013947) #31 RPS18 (ENSCPOG00000019675) B3GALT4 (ENSCPOG00000012731) #34 WDR46 (ENSCPOG00000012733) #35 PFDN6 (ENSCPOG00000019520) #36 Naked mole-rat female MODERN SPECIES 4 GPSM3 (ENSHGLG00000012807) HLA-DRA (ENSHGLG00000012243) #10 ENSHGLG00000012074 ENSHGLG00000011873 ENSHGLG00000011613 ENSHGLG00000011398 ENSHGLG00000043086 HLA-DQB2 (ENSHGLG00000038840) #14 HLA-DOB (ENSHGLG00000016652) #15 TAP2 (ENSHGLG00000019356) #16 PSMB8 (ENSHGLG00000017087) #17 TAP1 (ENSHGLG00000017081) #18 PSMB9 (ENSHGLG00000036914) #19 HLA-DMB (ENSHGLG00000017060) #20 HLA-DMA (ENSHGLG00000017048) #21 BRD2 (ENSHGLG00000019334) #22 HLA-DOA (ENSHGLG00000019255) #23 HLA-DPA1 (ENSHGLG00000019266) #24 HLA-DPB1 (ENSHGLG00000019389) #25 COL11A2 (ENSHGLG00000018531) #26 RXRB (ENSHGLG00000018456) #27 SLC39A7 (ENSHGLG00000018434) #28 HSD17B8 (ENSHGLG00000019497) #29 RING1 (ENSHGLG00000019474) #30 VPS52 (ENSHGLG00000017226) #31 B3GALT4 (ENSHGLG00000046221) #34 WDR46 (ENSHGLG00000017190) #35 PFDN6 (ENSHGLG00000017170) #36 RGL2 (ENSHGLG00000017158) #37 TAPBP (ENSHGLG00000017138) ZBTB22 (ENSHGLG00000017146) Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ENSGT00940000155371 #12 ENSGT00940000154993.k.a ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Eurasian red squirrel MODERN SPECIES 16 HLA-DRA (ENSSVLG00005007588) #10 ENSSVLG00005007546 ENSSVLG00005007511 #12 ENSSVLG00005007482 ENSSVLG00005007455 #13 HLA-DQB2 (ENSSVLG00005007368) #14 ENSSVLG00005007173 #13 ENSSVLG00005006864 #14 HLA-DOB (ENSSVLG00005006746) #15 TAP2 (ENSSVLG00005006696) #16 PSMB8 (ENSSVLG00005006647) #17 TAP1 (ENSSVLG00005006618) #18 PSMB9 (ENSSVLG00005006563) #19 HLA-DMB (ENSSVLG00005006515) #20 HLA-DMA (ENSSVLG00005006465) #21 BRD2 (ENSSVLG00005006374) #22 HLA-DOA (ENSSVLG00005006335) #23 HLA-DPA1 (ENSSVLG00005006304) #24 HLA-DPB1 (ENSSVLG00005006269) #25 COL11A2 (ENSSVLG00005005202) #26 RXRB (ENSSVLG00005004952) #27 SLC39A7 (ENSSVLG00005004925) #28 HSD17B8 (ENSSVLG00005004902) #29 RING1 (ENSSVLG00005004804) #30 ENSSVLG00005004778 VPS52 (ENSSVLG00005004757) #31 RPS18 (ENSSVLG00005004721) B3GALT4 (ENSSVLG00005004704) #34 WDR46 (ENSSVLG00005004694) #35 ENSSVLG00005004670 #36 RGL2 (ENSSVLG00005004647) #37 Marmotini ANCESTRAL SPECIES 18 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ENSGT00940000154993.k.a ENSGT00940000161821.k #13 ENSGT00940000154723.b #14 ENSGT00940000161821.l.a #13 ENSGT00940000162353.i #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00940000162353.i #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Arctic ground squirrel MODERN SPECIES 25 HLA-DMB (ENSUPAG00010005014) #20 HLA-DMA (ENSUPAG00010005022) #21 BRD2 (ENSUPAG00010005033) #22 HLA-DOA (ENSUPAG00010005068) #23 HLA-DPB1 (ENSUPAG00010005123) #25 HLA-DPA1 (ENSUPAG00010012558) #24 COL11A2 (ENSUPAG00010012591) #26 RXRB (ENSUPAG00010013376) #27 SLC39A7 (ENSUPAG00010013405) #28 HSD17B8 (ENSUPAG00010013412) #29 RING1 (ENSUPAG00010013424) #30 VPS52 (ENSUPAG00010013433) #31 ENSUPAG00010013506 B3GALT4 (ENSUPAG00010013513) #34 WDR46 (ENSUPAG00010013516) #35 PFDN6 (ENSUPAG00010013562) #36 RGL2 (ENSUPAG00010013583) #37 TAPBP (ENSUPAG00010013596) Squirrel MODERN SPECIES 76 ENSSTOG00000028098 HLA-DOB (ENSSTOG00000003405) #15 ENSSTOG00000030715 TAP2 (ENSSTOG00000003413) #16 PSMB8 (ENSSTOG00000019724) #17 TAP1 (ENSSTOG00000003451) #18 PSMB9 (ENSSTOG00000003475) #19 HLA-DMB (ENSSTOG00000019821) #20 HLA-DMA (ENSSTOG00000009246) #21 BRD2 (ENSSTOG00000010807) #22 HLA-DOA (ENSSTOG00000010820) #23 HLA-DPA1 (ENSSTOG00000003558) #24 HLA-DPB1 (ENSSTOG00000003567) #25 COL11A2 (ENSSTOG00000003578) #26 RXRB (ENSSTOG00000027099) #27 SLC39A7 (ENSSTOG00000014304) #28 HSD17B8 (ENSSTOG00000020853) #29 RING1 (ENSSTOG00000026166) #30 VPS52 (ENSSTOG00000002397) #31 ENSSTOG00000002417 B3GALT4 (ENSSTOG00000024877) #34 WDR46 (ENSSTOG00000002433) #35 PFDN6 (ENSSTOG00000027428) #36 RGL2 (ENSSTOG00000024728) #37 TAPBP (ENSSTOG00000025004) Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 24 ENSMMMG00000023121 RAB8A (ENSMMMG00000023118) TPM4 (ENSMMMG00000022621) ENSMMMG00000022612 ENSMMMG00000022610 ENSMMMG00000022564 ENSMMMG00000022557 CYP4F2 (ENSMMMG00000022533) CYP4F8 (ENSMMMG00000022511) CYP4F22 (ENSMMMG00000022504) PGLYRP2 (ENSMMMG00000022496) RASAL3 (ENSMMMG00000022474) ENSMMMG00000022459 AKAP8L (ENSMMMG00000022438) AKAP8 (ENSMMMG00000022416) ENSMMMG00000022411 #22 ENSMMMG00000022407 EPHX3 (ENSMMMG00000022401) NOTCH3 (ENSMMMG00000022356) ENSMMMG00000022351 ILVBL (ENSMMMG00000022300) SYDE1 (ENSMMMG00000022294) OR1I1 (ENSMMMG00000022293) CASP14 (ENSMMMG00000022289) CCDC105 (ENSMMMG00000022286) SLC1A6 (ENSMMMG00000022279) ENSMMMG00000022278 ENSMMMG00000022277 ENSMMMG00000022259 ENSMMMG00000022258 ENSMMMG00000022253 Alpin marmot MODERN SPECIES 20 ENSMMMG00000018777 ENSMMMG00000018780 ENSMMMG00000018785 #13 ENSMMMG00000018797 ENSMMMG00000018808 #14 ENSMMMG00000020395 ENSMMMG00000024056 #14 ENSMMMG00000024215 HLA-DOB (ENSMMMG00000024217) #15 TAP2 (ENSMMMG00000024218) #16 PSMB8 (ENSMMMG00000024220) #17 TAP1 (ENSMMMG00000024221) #18 PSMB9 (ENSMMMG00000024222) #19 HLA-DMB (ENSMMMG00000024223) #20 HLA-DMA (ENSMMMG00000024224) #21 BRD2 (ENSMMMG00000024225) #22 HLA-DOA (ENSMMMG00000024226) #23 HLA-DPA1 (ENSMMMG00000024227) #24 HLA-DPB1 (ENSMMMG00000024228) #25 COL11A2 (ENSMMMG00000024229) #26 RXRB (ENSMMMG00000024230) #27 SLC39A7 (ENSMMMG00000024231) #28 HSD17B8 (ENSMMMG00000024232) #29 RING1 (ENSMMMG00000024233) #30 VPS52 (ENSMMMG00000024234) #31 ENSMMMG00000024235 B3GALT4 (ENSMMMG00000024236) #34 WDR46 (ENSMMMG00000024237) #35 PFDN6 (ENSMMMG00000024238) #36 RGL2 (ENSMMMG00000024239) #37 TAPBP (ENSMMMG00000024240) Lagomorpha ANCESTRAL SPECIES 2 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #12 ENSGT00940000154723.b #14 ENSGT00940000154993 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.d ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Rabbit MODERN SPECIES 3 ENSOCUG00000021762 ENSOCUG00000006769 #9 ENSOCUG00000025822 #8 HLA-DRA (ENSOCUG00000009103) #10 ENSOCUG00000029731 ENSOCUG00000030453 #12 HLA-DQB1 (ENSOCUG00000002485) #14 ENSOCUG00000002480 #13 HLA-DOB (ENSOCUG00000029437) #15 TAP2 (ENSOCUG00000002489) #16 PSMB8 (ENSOCUG00000002131) #17 TAP1 (ENSOCUG00000002135) #18 ENSOCUG00000002139 #19 HLA-DMB (ENSOCUG00000026567) #20 HLA-DMA (ENSOCUG00000022573) #21 BRD2 (ENSOCUG00000003097) #22 ENSOCUG00000003319 #23 HLA-DPB1 (ENSOCUG00000008721) #25 COL11A2 (ENSOCUG00000016497) #26 RXRB (ENSOCUG00000011590) #27 SLC39A7 (ENSOCUG00000011598) #28 HSD17B8 (ENSOCUG00000020995) #29 VPS52 (ENSOCUG00000010533) #31 ENSOCUG00000010546 B3GALT4 (ENSOCUG00000010550) #34 ENSOCUG00000010554 #35 PFDN6 (ENSOCUG00000010559) #36 RGL2 (ENSOCUG00000026930) #37 TAPBP (ENSOCUG00000010563) DAXX (ENSOCUG00000010574) SMIM40 (ENSOCUG00000037016) Pika MODERN SPECIES 3165 ENSOPRG00000007415 #20 HLA-DMA (ENSOPRG00000007424) #21 BRD2 (ENSOPRG00000007431) #22 HLA-DOA (ENSOPRG00000007456) #23 ENSOPRG00000007464 #24 Tree shrew MODERN SPECIES 5170 HLA-DMB (ENSTBEG00000016414) #20 BRD2 (ENSTBEG00000016659) #22 Primates ANCESTRAL SPECIES 5 ENSGT00530000064839 #7 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000163287 ENSGT00530000064839 #7 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Tarsier DUPLICATION Tarsier MODERN SPECIES 1195 BRD2 (ENSTSYG00000004390) #22 HLA-DOA (ENSTSYG00000005170) #23 HLA-DPA1 (ENSTSYG00000013384) #24 HLA-DPB1 (ENSTSYG00000009782) #25 COL11A2 (ENSTSYG00000027190) #26 RXRB (ENSTSYG00000033111) #27 SLC39A7 (ENSTSYG00000026087) #28 HSD17B8 (ENSTSYG00000029416) #29 RING1 (ENSTSYG00000036469) #30 VPS52 (ENSTSYG00000012493) #31 RPS18 (ENSTSYG00000012508) WDR46 (ENSTSYG00000028390) #35 ENSTSYG00000037267 #36 ENSTSYG00000006290 TAPBP (ENSTSYG00000036113) DAXX (ENSTSYG00000029920) Tarsier MODERN SPECIES 1411 CRHR2 (ENSTSYG00000001674) GARS (ENSTSYG00000008538) ENSTSYG00000025595 #22 GGCT (ENSTSYG00000001156) NOD1 (ENSTSYG00000001155) Simiiformes ANCESTRAL SPECIES 5 ENSGT00530000064839 #7 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES 2 ENSGT00940000154723.b.k #14 ENSGT00940000154993.n ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #14 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.b #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Cebidae ANCESTRAL SPECIES 5 ENSGT00940000154993.n.a ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #14 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.b #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Cebidae_a ANCESTRAL SPECIES 25 ENSGT00940000154993.n.a.b ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #14 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022.b #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 ENSGT00940000160991 Capuchin MODERN SPECIES 24 HLA-DRA (ENSCCAG00000027271) #10 ENSCCAG00000033580 ENSCCAG00000024284 HLA-DRB1 (ENSCCAG00000025004) HLA-DQA2 (ENSCCAG00000023549) ENSCCAG00000025088 #14 ENSCCAG00000023824 ENSCCAG00000028168 #14 HLA-DOB (ENSCCAG00000034021) #15 TAP2 (ENSCCAG00000035497) #16 PSMB8 (ENSCCAG00000026335) #17 TAP1 (ENSCCAG00000024218) #18 PSMB9 (ENSCCAG00000036808) #19 HLA-DMB (ENSCCAG00000030904) #20 HLA-DMA (ENSCCAG00000031122) #21 ENSCCAG00000016930 #22 HLA-DOA (ENSCCAG00000024211) #23 HLA-DPA1 (ENSCCAG00000035048) #24 HLA-DPB1 (ENSCCAG00000036491) #25 COL11A2 (ENSCCAG00000021086) #26 RXRB (ENSCCAG00000015878) #27 SLC39A7 (ENSCCAG00000021481) #28 HSD17B8 (ENSCCAG00000034063) #29 RING1 (ENSCCAG00000020672) #30 VPS52 (ENSCCAG00000029806) #31 RPS18 (ENSCCAG00000023639) WDR46 (ENSCCAG00000029352) #35 PFDN6 (ENSCCAG00000027108) #36 RGL2 (ENSCCAG00000036457) #37 TAPBP (ENSCCAG00000030579) ZBTB22 (ENSCCAG00000019414) Bolivian squirrel monkey MODERN SPECIES 49 DEFB110 (ENSSBOG00000019583) DEFB112 (ENSSBOG00000031354) TFAP2D (ENSSBOG00000033191) TFAP2B (ENSSBOG00000021734) ENSSBOG00000033280 PKHD1 (ENSSBOG00000026830) IL17A (ENSSBOG00000031117) IL17F (ENSSBOG00000022387) MCM3 (ENSSBOG00000019946) PAQR8 (ENSSBOG00000008561) EFHC1 (ENSSBOG00000023512) TRAM2 (ENSSBOG00000033153) HLA-DMB (ENSSBOG00000028499) #20 HLA-DMA (ENSSBOG00000020585) #21 ENSSBOG00000034712 ENSSBOG00000033070 #22 HLA-DOA (ENSSBOG00000022957) #23 HLA-DPA1 (ENSSBOG00000026139) #24 HLA-DPB1 (ENSSBOG00000023374) #25 COL11A2 (ENSSBOG00000030814) #26 RXRB (ENSSBOG00000028234) #27 SLC39A7 (ENSSBOG00000027575) #28 HSD17B8 (ENSSBOG00000033905) #29 ENSSBOG00000021715 #30 VPS52 (ENSSBOG00000034931) #31 ENSSBOG00000034369 WDR46 (ENSSBOG00000032568) #35 PFDN6 (ENSSBOG00000034801) #36 RGL2 (ENSSBOG00000031644) #37 TAPBP (ENSSBOG00000031122) ZBTB22 (ENSSBOG00000018285) Marmoset MODERN SPECIES 16 ENSCJAG00000072632 ENSCJAG00000042232 ENSCJAG00000044447 ENSCJAG00000046350 ENSCJAG00000082318 ENSCJAG00000073641 ENSCJAG00000043141 ENSCJAG00000072040 ENSCJAG00000021548 #14 ENSCJAG00000045515 HLA-DOB (ENSCJAG00000035217) #15 TAP2 (ENSCJAG00000021550) #16 TAP1 (ENSCJAG00000021552) #18 PSMB9 (ENSCJAG00000021553) #19 HLA-DMA (ENSCJAG00000021558) #21 ENSCJAG00000021566 #22 HLA-DOA (ENSCJAG00000021571) #23 HLA-DPA1 (ENSCJAG00000057301) #24 HLA-DPB1 (ENSCJAG00000021575) #25 COL11A2 (ENSCJAG00000021577) #26 RXRB (ENSCJAG00000021619) #27 SLC39A7 (ENSCJAG00000021622) #28 ENSCJAG00000021632 #29 RING1 (ENSCJAG00000081691) #30 VPS52 (ENSCJAG00000021644) #31 ENSCJAG00000021650 B3GALT4 (ENSCJAG00000043225) #34 WDR46 (ENSCJAG00000021659) #35 PFDN6 (ENSCJAG00000021665) #36 RGL2 (ENSCJAG00000021668) #37 TAPBP (ENSCJAG00000021675) Mas night monkey MODERN SPECIES 1006 ENSANAG00000025439 ENSANAG00000023444 #14 HLA-DQA2 (ENSANAG00000023973) HLA-DQB2 (ENSANAG00000025105) #14 TAP2 (ENSANAG00000023266) #16 PSMB8 (ENSANAG00000023214) #17 TAP1 (ENSANAG00000025374) #18 PSMB9 (ENSANAG00000018195) #19 ENSANAG00000029686 HLA-DMB (ENSANAG00000031322) #20 HLA-DMA (ENSANAG00000024515) #21 ENSANAG00000022510 BRD2 (ENSANAG00000025054) #22 HLA-DOA (ENSANAG00000023738) #23 ENSANAG00000020251 ENSANAG00000021916 HLA-DPA1 (ENSANAG00000025586) #24 Platyrrhini ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.mc #22 Cebidae ANCESTRAL SPECIES 1 ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338 ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e ENSGT00940000156746 ENSGT00940000155661 Cebidae_a ANCESTRAL SPECIES ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338.i ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e.a ENSGT00940000156746 ENSGT00940000155661 Capuchin MODERN SPECIES 163 TTC22 (ENSCCAG00000033419) LEXM (ENSCCAG00000027952) ENSCCAG00000028192 TMEM61 (ENSCCAG00000024822) BSND (ENSCCAG00000021350) ENSCCAG00000030255 PCSK9 (ENSCCAG00000036131) USP24 (ENSCCAG00000027655) ENSCCAG00000022168 PLPP3 (ENSCCAG00000001330) PRKAA2 (ENSCCAG00000035336) FYB2 (ENSCCAG00000027589) C8A (ENSCCAG00000024662) C8B (ENSCCAG00000031384) DAB1 (ENSCCAG00000024787) ENSCCAG00000022246 #22 OMA1 (ENSCCAG00000022811) TACSTD2 (ENSCCAG00000032228) MYSM1 (ENSCCAG00000029058) FGGY (ENSCCAG00000033989) ENSCCAG00000025106 HOOK1 (ENSCCAG00000006471) CYP2J2 (ENSCCAG00000027549) C1orf87 (ENSCCAG00000027605) Bolivian squirrel monkey MODERN SPECIES 45 TTC4 (ENSSBOG00000032224) TTC22 (ENSSBOG00000026280) LEXM (ENSSBOG00000006931) DHCR24 (ENSSBOG00000025550) TMEM61 (ENSSBOG00000013875) BSND (ENSSBOG00000035713) PCSK9 (ENSSBOG00000029957) USP24 (ENSSBOG00000022906) ENSSBOG00000031773 PLPP3 (ENSSBOG00000021254) PRKAA2 (ENSSBOG00000036202) FYB2 (ENSSBOG00000024468) C8A (ENSSBOG00000023783) C8B (ENSSBOG00000034357) DAB1 (ENSSBOG00000030885) ENSSBOG00000024749 #22 OMA1 (ENSSBOG00000023199) TACSTD2 (ENSSBOG00000024148) MYSM1 (ENSSBOG00000031552) ENSSBOG00000029734 FGGY (ENSSBOG00000031213) HOOK1 (ENSSBOG00000032069) CYP2J2 (ENSSBOG00000033096) C1orf87 (ENSSBOG00000033425) ENSSBOG00000024205 NFIA (ENSSBOG00000030190) ENSSBOG00000028260 ENSSBOG00000028010 PATJ (ENSSBOG00000022857) KANK4 (ENSSBOG00000020644) USP1 (ENSSBOG00000020735) Marmoset MODERN SPECIES 19 TTC4 (ENSCJAG00000015611) TTC22 (ENSCJAG00000015639) LEXM (ENSCJAG00000015646) DHCR24 (ENSCJAG00000015653) TMEM61 (ENSCJAG00000015669) BSND (ENSCJAG00000042101) PCSK9 (ENSCJAG00000015682) USP24 (ENSCJAG00000015739) PLPP3 (ENSCJAG00000015880) ENSCJAG00000054878 PRKAA2 (ENSCJAG00000015889) FYB2 (ENSCJAG00000015907) C8A (ENSCJAG00000015926) C8B (ENSCJAG00000015932) DAB1 (ENSCJAG00000015941) ENSCJAG00000022997 #22 ENSCJAG00000070548 ENSCJAG00000084546 OMA1 (ENSCJAG00000016000) ENSCJAG00000074487 TACSTD2 (ENSCJAG00000016017) MYSM1 (ENSCJAG00000016020) FGGY (ENSCJAG00000016043) ENSCJAG00000022957 HOOK1 (ENSCJAG00000016077) CYP2J2 (ENSCJAG00000016130) C1orf87 (ENSCJAG00000016137) ENSCJAG00000053189 ENSCJAG00000022998 NFIA (ENSCJAG00000016165) ENSCJAG00000078946 Catarrhini ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Hominidae ANCESTRAL SPECIES 5 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.a ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000154993.m.a.b ENSGT00940000154993.m.a.a ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Gorilla MODERN SPECIES 19 BTNL2 (ENSGGOG00000009855) #9 HLA-DRA (ENSGGOG00000009861) #10 HLA-DRB5 (ENSGGOG00000037929) ENSGGOG00000000700 HLA-DQA1 (ENSGGOG00000013538) HLA-DQB1 (ENSGGOG00000004252) #14 ENSGGOG00000037744 HLA-DQB2 (ENSGGOG00000014413) #14 HLA-DOB (ENSGGOG00000043194) #15 TAP2 (ENSGGOG00000010941) #16 PSMB8 (ENSGGOG00000010953) #17 TAP1 (ENSGGOG00000010958) #18 PSMB9 (ENSGGOG00000010965) #19 HLA-DMB (ENSGGOG00000022404) #20 ENSGGOG00000005835 #21 BRD2 (ENSGGOG00000043461) #22 ENSGGOG00000005838 HLA-DOA (ENSGGOG00000010653) #23 HLA-DPA1 (ENSGGOG00000013625) #24 HLA-DPB1 (ENSGGOG00000013630) #25 COL11A2 (ENSGGOG00000009799) #26 RXRB (ENSGGOG00000009823) #27 SLC39A7 (ENSGGOG00000009830) #28 HSD17B8 (ENSGGOG00000009838) #29 RING1 (ENSGGOG00000009842) #30 VPS52 (ENSGGOG00000006565) #31 RPS18 (ENSGGOG00000006571) WDR46 (ENSGGOG00000006578) #35 PFDN6 (ENSGGOG00000006583) #36 RGL2 (ENSGGOG00000006585) #37 TAPBP (ENSGGOG00000006593) Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000154993.m.a.b ENSGT00940000154993.m.a.a ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Pan ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Chimpanzee MODERN SPECIES 19 PATR-DRA (ENSPTRG00000018016) #10 PATR-DRB5 (ENSPTRG00000023735) ENSPTRG00000051243 PATR-DQB1 (ENSPTRG00000018001) HLA-DQA1 (ENSPTRG00000018017) HLA-DQB1 (ENSPTRG00000018018) #14 HLA-DQA2 (ENSPTRG00000034186) HLA-DQB2 (ENSPTRG00000023404) #14 PATR-DOB (ENSPTRG00000018020) #15 TAP2 (ENSPTRG00000018021) #16 PSMB8 (ENSPTRG00000018022) #17 TAP1 (ENSPTRG00000018023) #18 PSMB9 (ENSPTRG00000018024) #19 PATR-DMB (ENSPTRG00000018025) #20 ENSPTRG00000018026 #21 BRD2 (ENSPTRG00000042676) #22 ENSPTRG00000018027 HLA-DOA (ENSPTRG00000018028) #23 HLA-DPA1 (ENSPTRG00000018029) #24 HLA-DPB1 (ENSPTRG00000018030) #25 COL11A2 (ENSPTRG00000018033) #26 RXRB (ENSPTRG00000018034) #27 SLC39A7 (ENSPTRG00000018035) #28 HSD17B8 (ENSPTRG00000018036) #29 RING1 (ENSPTRG00000018037) #30 VPS52 (ENSPTRG00000018038) #31 RPS18 (ENSPTRG00000018039) WDR46 (ENSPTRG00000018040) #35 PFDN6 (ENSPTRG00000018041) #36 RGL2 (ENSPTRG00000018042) #37 TAPBP (ENSPTRG00000018043) Bonobo MODERN SPECIES 19 ENSPPAG00000036652 ENSPPAG00000039594 ENSPPAG00000019881 HLA-DQB1 (ENSPPAG00000041275) #14 HLA-DQA2 (ENSPPAG00000038014) HLA-DQB2 (ENSPPAG00000041341) #14 HLA-DOB (ENSPPAG00000027428) #15 TAP2 (ENSPPAG00000033938) #16 PSMB8 (ENSPPAG00000042377) #17 TAP1 (ENSPPAG00000029436) #18 PSMB9 (ENSPPAG00000038623) #19 ENSPPAG00000033020 HLA-DMB (ENSPPAG00000037856) #20 HLA-DMA (ENSPPAG00000041639) #21 ENSPPAG00000027710 BRD2 (ENSPPAG00000016843) #22 HLA-DOA (ENSPPAG00000036361) #23 HLA-DPA1 (ENSPPAG00000031863) #24 HLA-DPB1 (ENSPPAG00000041449) #25 COL11A2 (ENSPPAG00000013099) #26 RXRB (ENSPPAG00000038590) #27 SLC39A7 (ENSPPAG00000028225) #28 HSD17B8 (ENSPPAG00000032286) #29 RING1 (ENSPPAG00000001290) #30 VPS52 (ENSPPAG00000039628) #31 RPS18 (ENSPPAG00000037432) B3GALT4 (ENSPPAG00000040442) #34 WDR46 (ENSPPAG00000029606) #35 PFDN6 (ENSPPAG00000026096) #36 RGL2 (ENSPPAG00000030717) #37 TAPBP (ENSPPAG00000024524) Human MODERN SPECIES 18 HLA-DRB5 (ENSG00000198502) HLA-DRB1 (ENSG00000196126) HLA-DQA1 (ENSG00000196735) HLA-DQB1 (ENSG00000179344) #14 HLA-DQA2 (ENSG00000237541) HLA-DQB2 (ENSG00000232629) #14 HLA-DOB (ENSG00000241106) #15 ENSG00000250264 TAP2 (ENSG00000204267) #16 PSMB8 (ENSG00000204264) #17 PSMB9 (ENSG00000240065) #19 TAP1 (ENSG00000168394) #18 HLA-DMB (ENSG00000242574) #20 ENSG00000248993 HLA-DMA (ENSG00000204257) #21 BRD2 (ENSG00000204256) #22 HLA-DOA (ENSG00000204252) #23 HLA-DPA1 (ENSG00000231389) #24 HLA-DPB1 (ENSG00000223865) #25 COL11A2 (ENSG00000204248) #26 RXRB (ENSG00000204231) #27 SLC39A7 (ENSG00000112473) #28 HSD17B8 (ENSG00000204228) #29 RING1 (ENSG00000204227) #30 VPS52 (ENSG00000223501) #31 RPS18 (ENSG00000231500) B3GALT4 (ENSG00000235863) #34 WDR46 (ENSG00000227057) #35 PFDN6 (ENSG00000204220) #36 RGL2 (ENSG00000237441) #37 TAPBP (ENSG00000231925) Orangutan MODERN SPECIES 19 TSBP1 (ENSPPYG00000016489) #7 BTNL2 (ENSPPYG00000017215) #9 HLA-DRA (ENSPPYG00000017234) #10 HLA-DRB1 (ENSPPYG00000016490) ENSPPYG00000017216 HLA-DQA2 (ENSPPYG00000017219) HLA-DQB2 (ENSPPYG00000017220) #14 HLA-DOB (ENSPPYG00000017221) #15 TAP2 (ENSPPYG00000017222) #16 PSMB8 (ENSPPYG00000017223) #17 TAP1 (ENSPPYG00000017224) #18 PSMB9 (ENSPPYG00000017225) #19 HLA-DMB (ENSPPYG00000017226) #20 ENSPPYG00000017227 #21 ENSPPYG00000031820 BRD2 (ENSPPYG00000017228) #22 HLA-DOA (ENSPPYG00000016495) #23 ENSPPYG00000029571 #25 HLA-DPA1 (ENSPPYG00000017229) #24 COL11A2 (ENSPPYG00000017238) #26 RXRB (ENSPPYG00000017239) #27 SLC39A7 (ENSPPYG00000017240) #28 HSD17B8 (ENSPPYG00000017241) #29 RING1 (ENSPPYG00000017242) #30 VPS52 (ENSPPYG00000017243) #31 ENSPPYG00000025953 B3GALT4 (ENSPPYG00000017244) #34 WDR46 (ENSPPYG00000017245) #35 PFDN6 (ENSPPYG00000038269) #36 RGL2 (ENSPPYG00000017247) #37 TAPBP (ENSPPYG00000017248) Gibbon MODERN SPECIES 10 HLA-DRA (ENSNLEG00000006686) #10 ENSNLEG00000032832 HLA-DQA1 (ENSNLEG00000032515) HLA-DQB1 (ENSNLEG00000006693) #14 HLA-DQA2 (ENSNLEG00000027015) HLA-DQB2 (ENSNLEG00000006713) #14 HLA-DOB (ENSNLEG00000027543) #15 TAP2 (ENSNLEG00000006714) #16 PSMB8 (ENSNLEG00000006733) #17 TAP1 (ENSNLEG00000006738) #18 PSMB9 (ENSNLEG00000006757) #19 ENSNLEG00000032895 HLA-DMB (ENSNLEG00000006770) #20 HLA-DMA (ENSNLEG00000006775) #21 ENSNLEG00000032110 BRD2 (ENSNLEG00000006782) #22 ENSNLEG00000031675 #23 HLA-DPA1 (ENSNLEG00000034417) #24 HLA-DPB1 (ENSNLEG00000006801) #25 ENSNLEG00000030023 #26 RXRB (ENSNLEG00000006809) #27 SLC39A7 (ENSNLEG00000006815) #28 HSD17B8 (ENSNLEG00000006824) #29 RING1 (ENSNLEG00000006830) #30 VPS52 (ENSNLEG00000006832) #31 RPS18 (ENSNLEG00000006840) B3GALT4 (ENSNLEG00000006841) #34 ENSNLEG00000006842 #35 PFDN6 (ENSNLEG00000034338) #36 RGL2 (ENSNLEG00000006847) #37 ENSNLEG00000006852 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 177 ENSGT00940000154993.m.a.a ENSGT00940000154993.m.b ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.nc #22 ENSGT00940000162112 #23 Golden snub-nosed monkey MODERN SPECIES 1416 TAP2 (ENSRROG00000033497) #16 PSMB8 (ENSRROG00000019326) #17 TAP1 (ENSRROG00000021353) #18 PSMB9 (ENSRROG00000005028) #19 ENSRROG00000012955 HLA-DMB (ENSRROG00000039771) #20 HLA-DMA (ENSRROG00000037828) #21 ENSRROG00000034857 ENSRROG00000012557 #22 HLA-DOA (ENSRROG00000000054) #23 Black snub-nosed monkey MODERN SPECIES 1396 HLA-DQA1 (ENSRBIG00000031838) ENSRBIG00000031872 #14 HLA-DOB (ENSRBIG00000039119) #15 TAP2 (ENSRBIG00000042752) #16 PSMB8 (ENSRBIG00000032621) #17 TAP1 (ENSRBIG00000038729) #18 PSMB9 (ENSRBIG00000042419) #19 ENSRBIG00000031206 HLA-DMB (ENSRBIG00000031730) #20 HLA-DMA (ENSRBIG00000027897) #21 ENSRBIG00000033102 ENSRBIG00000044329 #22 HLA-DOA (ENSRBIG00000041291) #23 Rhinopithecus ANCESTRAL SPECIES 229 ENSGT01010000222336.a.a.a.ob.a.a.o ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b ENSGT00390000000083.a ENSGT00390000013207 ENSGT00940000153385.b.a.b.oc #22 ENSGT00940000156005 ENSGT00940000156891 ENSGT00940000158751 ENSGT00730000111019 ENSGT00390000016097 ENSGT00390000009546.a ENSGT00910000147388 ENSGT00860000135749 ENSGT00940000159153 ENSGT00940000157159 ENSGT00940000155944 ENSGT00940000153222.a.b.b.b.b.k.b ENSGT00940000157417 ENSGT00940000158243 ENSGT00940000161472 Black snub-nosed monkey MODERN SPECIES 713 ENSRBIG00000023969 ENSRBIG00000031681 RIOX1 (ENSRBIG00000017859) HEATR4 (ENSRBIG00000041847) ENSRBIG00000015372 #22 NUMB (ENSRBIG00000043156) PAPLN (ENSRBIG00000033248) PSEN1 (ENSRBIG00000019293) RBM25 (ENSRBIG00000039904) ZFYVE1 (ENSRBIG00000036107) DCAF4 (ENSRBIG00000041818) ENSRBIG00000040543 ENSRBIG00000038609 DPF3 (ENSRBIG00000021314) RGS6 (ENSRBIG00000038422) SIPA1L1 (ENSRBIG00000013622) ENSRBIG00000033864 PCNX1 (ENSRBIG00000027567) MAP3K9 (ENSRBIG00000031048) TTC9 (ENSRBIG00000041695) Golden snub-nosed monkey MODERN SPECIES 797 ENSRROG00000036776 ENSRROG00000039724 RIOX1 (ENSRROG00000010218) HEATR4 (ENSRROG00000040469) ENSRROG00000035725 #22 NUMB (ENSRROG00000039499) PAPLN (ENSRROG00000032324) PSEN1 (ENSRROG00000023023) RBM25 (ENSRROG00000035556) ENSRROG00000028901 ZFYVE1 (ENSRROG00000037742) DCAF4 (ENSRROG00000035960) ENSRROG00000044529 ENSRROG00000045287 DPF3 (ENSRROG00000039384) RGS6 (ENSRROG00000040751) Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Macaca ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Macaca_a ANCESTRAL SPECIES 1 ENSGT00940000157246 ENSGT01030000234542.b.b.a.a.a.b.u ENSGT01060000248581.A.b.l ENSGT00940000164421.c ENSGT01100000263561.C.d.a.a ENSGT01100000263561.C.d.a.b.a ENSGT00940000164421.d ENSGT01060000248581.A.b.k ENSGT00940000154646.C.n.a ENSGT00940000161507 ENSGT00940000158718 ENSGT00940000161423 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000153385.b.a.b.pc #22 ENSGT00940000162790.a ENSGT00940000162086 ENSGT00940000160234 ENSGT00940000158035 ENSGT01030000234635.a.a.a.b ENSGT00940000162852.a ENSGT00940000162117 ENSGT00390000003207.a ENSGT00940000159972 ENSGT00940000162084 ENSGT00940000153523.j ENSGT00950000183216.d ENSGT00940000153523.i.b ENSGT00940000162597 ENSGT00940000163161 Crab-eating macaque MODERN SPECIES 10 RAB8A (ENSMFAG00000035674) ENSMFAG00000042469 ENSMFAG00000018623 CYP4F11 (ENSMFAG00000039188) OR10H5 (ENSMFAG00000054868) ENSMFAG00000054713 CYP4F57 (ENSMFAG00000045394) ENSMFAG00000052137 ENSMFAG00000053879 CYP4F22 (ENSMFAG00000043198) PGLYRP2 (ENSMFAG00000024296) WIZ (ENSMFAG00000039361) ENSMFAG00000051652 AKAP8L (ENSMFAG00000045237) AKAP8 (ENSMFAG00000042432) ENSMFAG00000030806 #22 EPHX3 (ENSMFAG00000001020) ILVBL (ENSMFAG00000030909) SYDE1 (ENSMFAG00000037133) OR1I1 (ENSMFAG00000049100) CASP14 (ENSMFAG00000045231) CCDC105 (ENSMFAG00000039156) SLC1A6 (ENSMFAG00000003076) OR7C2 (ENSMFAG00000034243) ENSMFAG00000057232 ENSMFAG00000047405 ENSMFAG00000058125 ZNF333 (ENSMFAG00000035483) ADGRE2 (ENSMFAG00000038126) CLEC17A (ENSMFAG00000043558) NDUFB7 (ENSMFAG00000043529) Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_d DUPLICATION Cercopithecinae_d ANCESTRAL SPECIES 68 ENSGT00390000004799 ENSGT00390000018900 ENSGT00940000153165.a.b.a ENSGT00940000164696 ENSGT00940000164691.a.b ENSGT00940000164793 ENSGT00940000154251.A.b.a.b.a ENSGT00950000183206.b.c.a.b.a.a ENSGT00940000161967 ENSGT00940000162415 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000158134.A ENSGT00940000162666 ENSGT00940000162246 ENSGT01090000259995.b.b.b ENSGT00940000153385.b.a.b.qc.a.a #22 ENSGT01090000259995.b.b.a.b.o ENSGT01090000259995.b.b.a.a.b.o.a.b ENSGT01090000259995.b.b.a.a.b.p.a Drill MODERN SPECIES 279 TRIM58 (ENSMLEG00000030196) OR2AJ1 (ENSMLEG00000005755) ENSMLEG00000031562 #22 ENSMLEG00000011380 ENSMLEG00000037918 ENSMLEG00000027254 Sooty mangabey MODERN SPECIES 301 ENSCATG00000030246 ZNF124 (ENSCATG00000035310) ENSCATG00000038074 ENSCATG00000005868 ZNF496 (ENSCATG00000031929) NLRP3 (ENSCATG00000029371) OR2B11 (ENSCATG00000043410) GCSAML (ENSCATG00000030752) OR13G1 (ENSCATG00000043354) TRIM58 (ENSCATG00000038759) ENSCATG00000030481 ENSCATG00000039502 #22 ENSCATG00000034652 ENSCATG00000017262 ENSCATG00000015507 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a.b #22 Sooty mangabey MODERN SPECIES 333 SMTNL1 (ENSCATG00000009203) TIMM10 (ENSCATG00000030369) SLC43A1 (ENSCATG00000036597) RTN4RL2 (ENSCATG00000029746) SLC43A3 (ENSCATG00000031268) PRG2 (ENSCATG00000039658) PRG3 (ENSCATG00000011827) P2RX3 (ENSCATG00000028693) SSRP1 (ENSCATG00000041377) TNKS1BP1 (ENSCATG00000037546) APLNR (ENSCATG00000019437) LRRC55 (ENSCATG00000010960) ENSCATG00000013388 OR9G4 (ENSCATG00000019474) ENSCATG00000019867 ENSCATG00000031014 #22 OR5M9 (ENSCATG00000020470) OR8J1 (ENSCATG00000014575) OR8K1 (ENSCATG00000018484) ENSCATG00000029525 ENSCATG00000018722 OR5I1 (ENSCATG00000016816) OR4S2 (ENSCATG00000018258) ENSCATG00000039191 OR4A8 (ENSCATG00000000891) Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000154993.m.a.a.a ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Vervet Monkey MODERN SPECIES 8 AGER (ENSCSAG00000009312) PBX2 (ENSCSAG00000009322) GPSM3 (ENSCSAG00000009326) NOTCH4 (ENSCSAG00000009351) HLA-DRA (ENSCSAG00000009368) #10 ENSCSAG00000009375 HLA-DRB1 (ENSCSAG00000009383) HLA-DQA1 (ENSCSAG00000009389) HLA-DQB1 (ENSCSAG00000009394) #14 HLA-DOB (ENSCSAG00000009402) #15 PSMB8 (ENSCSAG00000009409) #17 TAP1 (ENSCSAG00000009417) #18 PSMB9 (ENSCSAG00000009427) #19 HLA-DMB (ENSCSAG00000009430) #20 HLA-DMA (ENSCSAG00000009436) #21 BRD2 (ENSCSAG00000009445) #22 HLA-DOA (ENSCSAG00000009452) #23 ENSCSAG00000009455 #24 ENSCSAG00000009461 #25 COL11A2 (ENSCSAG00000009488) #26 RXRB (ENSCSAG00000009510) #27 SLC39A7 (ENSCSAG00000009519) #28 HSD17B8 (ENSCSAG00000009530) #29 RING1 (ENSCSAG00000009538) #30 VPS52 (ENSCSAG00000009546) #31 B3GALT4 (ENSCSAG00000019308) #34 WDR46 (ENSCSAG00000009552) #35 PFDN6 (ENSCSAG00000009556) #36 RGL2 (ENSCSAG00000009562) #37 TAPBP (ENSCSAG00000009568) ZBTB22 (ENSCSAG00000019307) Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000154993.m.a.a.a ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00910000147736 Macaca ANCESTRAL SPECIES 9 ENSGT00530000064839 #7 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.a.b.b ENSGT00940000154993.m.b.a.b ENSGT00940000154993.m.a.a.a ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00910000147736 Pig-tailed macaque MODERN SPECIES 528 ENSMNEG00000020869 ENSMNEG00000018617 ENSMNEG00000044119 HLA-DQA1 (ENSMNEG00000038603) HLA-DQB1 (ENSMNEG00000027969) #14 HLA-DOB (ENSMNEG00000043598) #15 TAP2 (ENSMNEG00000041413) #16 PSMB8 (ENSMNEG00000044942) #17 TAP1 (ENSMNEG00000041518) #18 PSMB9 (ENSMNEG00000038721) #19 ENSMNEG00000036723 ENSMNEG00000035658 HLA-DMB (ENSMNEG00000044507) #20 HLA-DMA (ENSMNEG00000032904) #21 ENSMNEG00000039758 BRD2 (ENSMNEG00000030743) #22 HLA-DOA (ENSMNEG00000008508) #23 HLA-DPA1 (ENSMNEG00000040889) #24 HLA-DPB1 (ENSMNEG00000029725) #25 ENSMNEG00000010287 #25 COL11A2 (ENSMNEG00000022236) #26 RXRB (ENSMNEG00000034252) #27 SLC39A7 (ENSMNEG00000034647) #28 HSD17B8 (ENSMNEG00000036244) #29 RING1 (ENSMNEG00000042339) #30 VPS52 (ENSMNEG00000038741) #31 ENSMNEG00000045500 WDR46 (ENSMNEG00000034609) #35 PFDN6 (ENSMNEG00000030272) #36 RGL2 (ENSMNEG00000039053) #37 ENSMNEG00000013214 Macaca_a ANCESTRAL SPECIES 9 ENSGT00890000139566 ENSGT00940000160293 ENSGT00390000002471 ENSGT00940000163287 ENSGT00950000183123.h.b ENSGT00530000064839 #7 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.b ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160668 #29 ENSGT00940000160076 #28 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 ENSGT00940000160991 Crab-eating macaque MODERN SPECIES 14 ENSMFAG00000033054 ENSMFAG00000049929 ENSMFAG00000033140 #7 HLA-DRA (ENSMFAG00000032157) #10 ENSMFAG00000058962 HLA-DRB5 (ENSMFAG00000000676) ENSMFAG00000054107 HLA-DQA1 (ENSMFAG00000002949) HLA-DOB (ENSMFAG00000003652) #15 TAP2 (ENSMFAG00000037139) #16 TAP1 (ENSMFAG00000041369) #18 PSMB9 (ENSMFAG00000038128) #19 HLA-DMB (ENSMFAG00000004018) #20 HLA-DMA (ENSMFAG00000042109) #21 ENSMFAG00000060572 BRD2 (ENSMFAG00000037520) #22 HLA-DOA (ENSMFAG00000058905) #23 RXRB (ENSMFAG00000003583) #27 HSD17B8 (ENSMFAG00000037332) #29 SLC39A7 (ENSMFAG00000038848) #28 RING1 (ENSMFAG00000002610) #30 COL11A2 (ENSMFAG00000017491) #26 RPS18 (ENSMFAG00000032199) B3GALT4 (ENSMFAG00000041942) #34 WDR46 (ENSMFAG00000000475) #35 PFDN6 (ENSMFAG00000041216) #36 RGL2 (ENSMFAG00000039597) #37 TAPBP (ENSMFAG00000000942) ZBTB22 (ENSMFAG00000011344) DAXX (ENSMFAG00000038728) ENSMFAG00000058856 Rhesus MODERN SPECIES 14 RNF5 (ENSMMUG00000018438) AGER (ENSMMUG00000018442) PBX2 (ENSMMUG00000018456) GPSM3 (ENSMMUG00000018459) NOTCH4 (ENSMMUG00000018461) ENSMMUG00000029402 TSBP1 (ENSMMUG00000018425) #7 MAMU-DRA (ENSMMUG00000039082) #10 MAMU-DRB1 (ENSMMUG00000029799) ENSMMUG00000054826 MAMU-DOB (ENSMMUG00000011293) #16 PSMB8 (ENSMMUG00000011301) #18 PSMB9 (ENSMMUG00000011304) #19 ENSMMUG00000063291 MAMU-DMB (ENSMMUG00000022626) #20 BRD2 (ENSMMUG00000023138) #22 MAMU-DOA (ENSMMUG00000015734) #23 ENSMMUG00000041095 ENSMMUG00000019371 #24 COL11A2 (ENSMMUG00000003850) #26 RXRB (ENSMMUG00000003858) #27 HSD17B8 (ENSMMUG00000003861) #29 SLC39A7 (ENSMMUG00000003859) #28 RING1 (ENSMMUG00000003863) #30 ENSMMUG00000003867 VPS52 (ENSMMUG00000003864) #31 B3GALT4 (ENSMMUG00000064507) #34 WDR46 (ENSMMUG00000003869) #35 PFDN6 (ENSMMUG00000003871) #36 RGL2 (ENSMMUG00000003872) #37 TAPBP (ENSMMUG00000003875) Cercopithecinae_b ANCESTRAL SPECIES 18 ENSGT00530000064866 ENSGT00940000153251.b.a ENSGT00390000015391 ENSGT00940000155046.t ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353.h #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n #24 ENSGT00940000162498.m #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 Cercopithecinae_d ANCESTRAL SPECIES 197 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353.h #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n #24 ENSGT00940000162390 #25 Drill MODERN SPECIES 1605 HLA-DOB (ENSMLEG00000044332) #15 TAP2 (ENSMLEG00000040111) #16 PSMB8 (ENSMLEG00000028732) #17 TAP1 (ENSMLEG00000042023) #18 PSMB9 (ENSMLEG00000009919) #19 ENSMLEG00000033307 HLA-DMB (ENSMLEG00000032921) #20 HLA-DMA (ENSMLEG00000039758) #21 ENSMLEG00000035779 ENSMLEG00000042296 #22 HLA-DOA (ENSMLEG00000037836) #23 ENSMLEG00000035946 #24 Sooty mangabey MODERN SPECIES 451 HLA-DQA1 (ENSCATG00000012156) HLA-DQB1 (ENSCATG00000030073) #14 ENSCATG00000036138 #15 TAP2 (ENSCATG00000038838) #16 PSMB8 (ENSCATG00000024878) #17 TAP1 (ENSCATG00000033980) #18 PSMB9 (ENSCATG00000041856) #19 ENSCATG00000037243 HLA-DMB (ENSCATG00000024024) #20 HLA-DMA (ENSCATG00000030669) #21 ENSCATG00000037729 ENSCATG00000034965 #22 HLA-DOA (ENSCATG00000035917) #23 ENSCATG00000024393 #24 HLA-DPB1 (ENSCATG00000038170) #25 Olive baboon MODERN SPECIES 16 CDSN (ENSPANG00000047914) PSORS1C2 (ENSPANG00000024487) ENSPANG00000049186 CCHCR1 (ENSPANG00000017010) TCF19 (ENSPANG00000024035) ENSPANG00000007627 ENSPANG00000044498 HLA-DOB (ENSPANG00000016388) #15 TAP2 (ENSPANG00000015103) #16 PSMB8 (ENSPANG00000016588) #17 TAP1 (ENSPANG00000024178) #18 PSMB9 (ENSPANG00000033974) #19 HLA-DMB (ENSPANG00000019593) #20 HLA-DMA (ENSPANG00000026492) #21 ENSPANG00000035618 BRD2 (ENSPANG00000019626) #22 HLA-DOA (ENSPANG00000031879) #23 HLA-DPA1 (ENSPANG00000018967) #24 HLA-DPB1 (ENSPANG00000005764) #25 COL11A2 (ENSPANG00000009194) #26 RXRB (ENSPANG00000018527) #27 SLC39A7 (ENSPANG00000023633) #28 HSD17B8 (ENSPANG00000023634) #29 RING1 (ENSPANG00000023635) #30 VPS52 (ENSPANG00000026491) #31 RPS18 (ENSPANG00000029306) B3GALT4 (ENSPANG00000040674) #34 WDR46 (ENSPANG00000009193) #35 PFDN6 (ENSPANG00000025458) #36 RGL2 (ENSPANG00000023572) #37 TAPBP (ENSPANG00000022348) Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00940000162450 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00940000161798 #34 ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 ENSGT00940000161821 #13 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b ENSGT00390000007075 #35 ENSGT00390000010512 #36 ENSGT00940000161403 #37 ENSGT00940000159200 ENSGT00940000160991 Lemuriformes_a ANCESTRAL SPECIES 76 ENSGT00940000163287 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 872 HLA-DQB1 (ENSPCOG00000014494) #14 HLA-DOB (ENSPCOG00000022286) #15 TAP2 (ENSPCOG00000014799) #16 PSMB8 (ENSPCOG00000028091) #17 TAP1 (ENSPCOG00000019389) #18 PSMB9 (ENSPCOG00000017686) #19 HLA-DMB (ENSPCOG00000018934) #20 HLA-DMA (ENSPCOG00000022072) #21 ENSPCOG00000016191 ENSPCOG00000018456 #22 ENSPCOG00000018880 HLA-DOA (ENSPCOG00000014372) #23 HLA-DPA1 (ENSPCOG00000015236) #24 Coquerels sifaka MODERN SPECIES 611 CPZ (ENSPCOG00000018885) TRMT44 (ENSPCOG00000028809) ACOX3 (ENSPCOG00000015967) HTRA3 (ENSPCOG00000015549) NANP (ENSPCOG00000022703) ENSPCOG00000014381 NINL (ENSPCOG00000019338) GINS1 (ENSPCOG00000016034) ABHD12 (ENSPCOG00000022073) PYGB (ENSPCOG00000021348) ENTPD6 (ENSPCOG00000022862) VSX1 (ENSPCOG00000013919) ACSS1 (ENSPCOG00000018745) APMAP (ENSPCOG00000023592) CST7 (ENSPCOG00000019725) ENSPCOG00000023905 #22 SYNDIG1 (ENSPCOG00000003880) ENSPCOG00000021349 Greater bamboo lemur MODERN SPECIES 650 ENSPSMG00000007220 #8 ENSPSMG00000007226 #9 HLA-DRA (ENSPSMG00000007272) #10 ENSPSMG00000007912 #12 ENSPSMG00000008349 HLA-DQB1 (ENSPSMG00000008743) #14 HLA-DOB (ENSPSMG00000008851) #15 TAP2 (ENSPSMG00000008940) #16 PSMB8 (ENSPSMG00000009083) #17 TAP1 (ENSPSMG00000009102) #18 PSMB9 (ENSPSMG00000009117) #19 HLA-DMB (ENSPSMG00000009134) #20 HLA-DMA (ENSPSMG00000009171) #21 BRD2 (ENSPSMG00000009223) #22 ENSPSMG00000009252 HLA-DOA (ENSPSMG00000009261) #23 HLA-DPA1 (ENSPSMG00000009402) #24 HLA-DPB1 (ENSPSMG00000009639) #25 ENSPSMG00000009792 #24 Mouse lemur MODERN SPECIES 28 CYP21A2 (ENSMICG00000016652) ENSMICG00000046247 ENSMICG00000016667 ATF6B (ENSMICG00000047519) PRRT1 (ENSMICG00000032288) PPT2 (ENSMICG00000001807) EGFL8 (ENSMICG00000042415) AGPAT1 (ENSMICG00000001813) RNF5 (ENSMICG00000048108) AGER (ENSMICG00000001823) PBX2 (ENSMICG00000001829) GPSM3 (ENSMICG00000026321) NOTCH4 (ENSMICG00000001835) HLA-DMB (ENSMICG00000043729) #20 HLA-DMA (ENSMICG00000010132) #21 BRD2 (ENSMICG00000003693) #22 HLA-DOA (ENSMICG00000047683) #23 HLA-DPA1 (ENSMICG00000003711) #24 HLA-DPB1 (ENSMICG00000030867) #25 ENSMICG00000001373 COL11A2 (ENSMICG00000000879) #26 RXRB (ENSMICG00000000899) #27 SLC39A7 (ENSMICG00000000905) #28 HSD17B8 (ENSMICG00000000908) #29 RING1 (ENSMICG00000030050) #30 VPS52 (ENSMICG00000027900) #31 ENSMICG00000035485 WDR46 (ENSMICG00000000916) #35 PFDN6 (ENSMICG00000000922) #36 RGL2 (ENSMICG00000000926) #37 TAPBP (ENSMICG00000042293) Bushbaby DUPLICATION Bushbaby MODERN SPECIES 220 ENSOGAG00000015917 ENSOGAG00000033148 CYP4F115 (ENSOGAG00000011748) CYP4F113 (ENSOGAG00000007410) ENSOGAG00000028565 CYP4F112 (ENSOGAG00000031204) CYP4F111 (ENSOGAG00000002017) CYP4F3 (ENSOGAG00000032860) CYP4F22 (ENSOGAG00000030936) ENSOGAG00000024112 PGLYRP2 (ENSOGAG00000026199) RASAL3 (ENSOGAG00000033656) WIZ (ENSOGAG00000010952) AKAP8L (ENSOGAG00000010943) AKAP8 (ENSOGAG00000029564) ENSOGAG00000000840 #22 EPHX3 (ENSOGAG00000006687) NOTCH3 (ENSOGAG00000006680) ENSOGAG00000024942 ILVBL (ENSOGAG00000014020) SYDE1 (ENSOGAG00000014015) OR1I1 (ENSOGAG00000003203) CASP14 (ENSOGAG00000024750) CCDC105 (ENSOGAG00000011860) SLC1A6 (ENSOGAG00000029166) ENSOGAG00000033292 OR7C2 (ENSOGAG00000031212) ENSOGAG00000025389 ENSOGAG00000028478 ENSOGAG00000026639 Bushbaby MODERN SPECIES 146 ENSOGAG00000013069 ENSOGAG00000025050 #8 BTNL2 (ENSOGAG00000008396) #9 HLA-DRA (ENSOGAG00000008398) #10 ENSOGAG00000009732 ENSOGAG00000030012 ENSOGAG00000008401 #13 HLA-DQB1 (ENSOGAG00000005662) #14 ENSOGAG00000031343 #16 PSMB8 (ENSOGAG00000013830) #17 TAP1 (ENSOGAG00000013836) #18 PSMB9 (ENSOGAG00000013846) #19 ENSOGAG00000013823 #16 HLA-DMB (ENSOGAG00000032749) #20 HLA-DMA (ENSOGAG00000006029) #21 BRD2 (ENSOGAG00000006473) #22 HLA-DOA (ENSOGAG00000014685) #23 HLA-DPA1 (ENSOGAG00000006476) #24 ENSOGAG00000016138 #25 ENSOGAG00000034269 COL11A2 (ENSOGAG00000025975) #26 RXRB (ENSOGAG00000011689) #27 SLC39A7 (ENSOGAG00000030006) #28 HSD17B8 (ENSOGAG00000006214) #29 RING1 (ENSOGAG00000006220) #30 VPS52 (ENSOGAG00000006222) #31 RPS18 (ENSOGAG00000006225) B3GALT4 (ENSOGAG00000006228) #34 WDR46 (ENSOGAG00000006230) #35 ENSOGAG00000028341 #36 RGL2 (ENSOGAG00000003996) #37