Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000154993 #10	ENSGT00940000162892	ENSGT00940000154723.b #13	ENSGT00940000161821 #12	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Glires	ANCESTRAL SPECIES	5	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000154993 #10	ENSGT00940000162892	ENSGT00940000154723.b #13	ENSGT00940000161821 #12	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.l ##10	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Muroidea	ANCESTRAL SPECIES	15	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972	ENSGT00940000161403 #35
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Mus	ANCESTRAL SPECIES	16	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00980000198488.m.a.b.a.b.a.a.a.c #29	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381.h #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #29	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381.h #19	ENSGT00940000160381.g #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #29	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512.`b #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Mouse	MODERN SPECIES	8	Btnl1 (ENSMUSG00000062638) #7	Btnl2 (ENSMUSG00000024340) #8	H2-Ea (ENSMUSG00000036322) #9	H2-Eb2 (ENSMUSG00000067341) #10	H2-Eb1 (ENSMUSG00000060586) #11	H2-Aa (ENSMUSG00000036594) #12	H2-Ab1 (ENSMUSG00000073421) #13	H2-Ob (ENSMUSG00000041538) #14	Tap2 (ENSMUSG00000024339) #15	Psmb8 (ENSMUSG00000024338) #16	Tap1 (ENSMUSG00000037321) #17	Psmb9 (ENSMUSG00000096727) #18	H2-DMb1 (ENSMUSG00000079547) #19	H2-DMb2 (ENSMUSG00000037548) #20	H2-DMa (ENSMUSG00000037649) #21	Brd2 (ENSMUSG00000024335) #22	H2-Oa (ENSMUSG00000024334) #23	Col11a2 (ENSMUSG00000024330) #24	Rxrb (ENSMUSG00000039656) #25	Slc39a7 (ENSMUSG00000024327) #26	Hsd17b8 (ENSMUSG00000073422) #27	Ring1 (ENSMUSG00000024325) #28	H2-K1 (ENSMUSG00000061232) #29	Vps52 (ENSMUSG00000024319) #30	Rps18 (ENSMUSG00000008668) #31	B3galt4 (ENSMUSG00000067370) #32	Wdr46 (ENSMUSG00000024312) #33	Pfdn6 (ENSMUSG00000024309) #34	Rgl2 (ENSMUSG00000041354) #35	Zbtb22 (ENSMUSG00000051390) #36	Tapbp (ENSMUSG00000024308) #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381.h #19	ENSGT00940000160381.g #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a ##29	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512.`b #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Steppe mouse	MODERN SPECIES	2564	Btnl1 (ENSMSIG00000010748) #7	Btnl2 (ENSMSIG00000010760) #8	H2-Ea (ENSMSIG00000010776) #9	H2-Eb2 (ENSMSIG00000010788) #10	ENSMSIG00000010807 #11	H2-Aa (ENSMSIG00000010823) #12	ENSMSIG00000010843 #13	H2-Ob (ENSMSIG00000010868) #14	Tap2 (ENSMSIG00000010919) #15	ENSMSIG00000010972	Psmb8 (ENSMSIG00000010986) #16	ENSMSIG00000011012 #17	Psmb9 (ENSMSIG00000011042) #18	H2-DMb1 (ENSMSIG00000011055) #19	H2-DMa (ENSMSIG00000011088) #21	Brd2 (ENSMSIG00000011118) #22	H2-Oa (ENSMSIG00000011198) #23	ENSMSIG00000011214	Col11a2 (ENSMSIG00000011347) #24	Rxrb (ENSMSIG00000012091) #25	Slc39a7 (ENSMSIG00000012137) #26	ENSMSIG00000012153 #27	Ring1 (ENSMSIG00000012190) #28	ENSMSIG00000012243	ENSMSIG00000012249 ##29	Vps52 (ENSMSIG00000012295) #30	Rps18 (ENSMSIG00000012382) #31	B3galt4 (ENSMSIG00000012406) #32	Wdr46 (ENSMSIG00000012419) #33	Pfdn6 (ENSMSIG00000012469) #34	Rgl2 (ENSMSIG00000012505) #35
spretus	MODERN SPECIES	8	Btnl1 (MGP_SPRETEiJ_G0022363) #7	Btnl2 (MGP_SPRETEiJ_G0022362) #8	H2-Eb2 (MGP_SPRETEiJ_G0022361) #10	MGP_SPRETEiJ_G0022360 #11	H2-Aa (MGP_SPRETEiJ_G0022359) #12	H2-Ab1 (MGP_SPRETEiJ_G0022358) #13	H2-Ob (MGP_SPRETEiJ_G0022357) #14	MGP_SPRETEiJ_G0022356	Tap2 (MGP_SPRETEiJ_G0022355) #15	Psmb8 (MGP_SPRETEiJ_G0022354) #16	Tap1 (MGP_SPRETEiJ_G0022353) #17	Psmb9 (MGP_SPRETEiJ_G0022352) #18	H2-DMb2 (MGP_SPRETEiJ_G0022351) #20	MGP_SPRETEiJ_G0022350 #19	H2-DMa (MGP_SPRETEiJ_G0022349) #21	Brd2 (MGP_SPRETEiJ_G0022348) #22	H2-Oa (MGP_SPRETEiJ_G0022347) #23	Col11a2 (MGP_SPRETEiJ_G0022346) #24	Rxrb (MGP_SPRETEiJ_G0022345) #25	Slc39a7 (MGP_SPRETEiJ_G0022344) #26	Hsd17b8 (MGP_SPRETEiJ_G0022343) #27	Ring1 (MGP_SPRETEiJ_G0022342) #28	MGP_SPRETEiJ_G0022340 ##31	B3galt4 (MGP_SPRETEiJ_G0022339) #32	Wdr46 (MGP_SPRETEiJ_G0022338) #33	Pfdn6 (MGP_SPRETEiJ_G0022337) #34	Rgl2 (MGP_SPRETEiJ_G0022336) #35	Zbtb22 (MGP_SPRETEiJ_G0022335) #36	Tapbp (MGP_SPRETEiJ_G0022334) #37	Daxx (MGP_SPRETEiJ_G0022333)	Cd320 (MGP_SPRETEiJ_G0022332)
Ryukyu mouse	MODERN SPECIES	8	Btnl1 (MGP_CAROLIEiJ_G0021457) #7	Btnl2 (MGP_CAROLIEiJ_G0021456) #8	H2-Eb2 (MGP_CAROLIEiJ_G0021455) #10	MGP_CAROLIEiJ_G0021454 #11	H2-Aa (MGP_CAROLIEiJ_G0021453) #12	H2-Ab1 (MGP_CAROLIEiJ_G0021452) #13	H2-Ob (MGP_CAROLIEiJ_G0021451) #14	MGP_CAROLIEiJ_G0021450	Tap2 (MGP_CAROLIEiJ_G0021449) #15	Psmb8 (MGP_CAROLIEiJ_G0021448) #16	Tap1 (MGP_CAROLIEiJ_G0021447) #17	Psmb9 (MGP_CAROLIEiJ_G0021446) #18	MGP_CAROLIEiJ_G0021445 #19	MGP_CAROLIEiJ_G0021444 #19	H2-DMa (MGP_CAROLIEiJ_G0021443) #21	Brd2 (MGP_CAROLIEiJ_G0021442) #22	H2-Oa (MGP_CAROLIEiJ_G0021441) #23	Col11a2 (MGP_CAROLIEiJ_G0021440) #24	Rxrb (MGP_CAROLIEiJ_G0021439) #25	Slc39a7 (MGP_CAROLIEiJ_G0021438) #26	Hsd17b8 (MGP_CAROLIEiJ_G0021437) #27	Ring1 (MGP_CAROLIEiJ_G0021436) #28	MGP_CAROLIEiJ_G0021435 #29	MGP_CAROLIEiJ_G0021434 ##29	MGP_CAROLIEiJ_G0021432	MGP_CAROLIEiJ_G0021431	MGP_CAROLIEiJ_G0021430 ##29	MGP_CAROLIEiJ_G0021429 ##29	Rps18 (MGP_CAROLIEiJ_G0021428) #31	B3galt4 (MGP_CAROLIEiJ_G0021427) #32	Wdr46 (MGP_CAROLIEiJ_G0021426) #33
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020455	Tsbp1 (MGP_PahariEiJ_G0020454)	Btnl1 (MGP_PahariEiJ_G0020453) #7	Btnl2 (MGP_PahariEiJ_G0020452) #8	H2-Eb2 (MGP_PahariEiJ_G0020451) #10	MGP_PahariEiJ_G0020450 #11	H2-Aa (MGP_PahariEiJ_G0020449) #12	H2-Ab1 (MGP_PahariEiJ_G0020448) #13	H2-Ob (MGP_PahariEiJ_G0020447) #14	MGP_PahariEiJ_G0020446	Tap2 (MGP_PahariEiJ_G0020445) #15	Psmb8 (MGP_PahariEiJ_G0020444) #16	Tap1 (MGP_PahariEiJ_G0020443) #17	Psmb9 (MGP_PahariEiJ_G0020442) #18	H2-DMa (MGP_PahariEiJ_G0020441) #21	Brd2 (MGP_PahariEiJ_G0020440) #22	H2-Oa (MGP_PahariEiJ_G0020439) #23	Col11a2 (MGP_PahariEiJ_G0020438) #24	Rxrb (MGP_PahariEiJ_G0020437) #25	Slc39a7 (MGP_PahariEiJ_G0020436) #26	Hsd17b8 (MGP_PahariEiJ_G0020435) #27	Ring1 (MGP_PahariEiJ_G0020434) #28	MGP_PahariEiJ_G0020433 #31	B3galt4 (MGP_PahariEiJ_G0020432) #32	Wdr46 (MGP_PahariEiJ_G0020431) #33	Pfdn6 (MGP_PahariEiJ_G0020430) #34	Rgl2 (MGP_PahariEiJ_G0020429) #35	Zbtb22 (MGP_PahariEiJ_G0020428) #36	Tapbp (MGP_PahariEiJ_G0020427) #37	Daxx (MGP_PahariEiJ_G0020426)	Cd320 (MGP_PahariEiJ_G0020425)
Rat	MODERN SPECIES	12	Tsbp1 (ENSRNOG00000039398)	Btnl3 (ENSRNOG00000039396) #7	Btnl2 (ENSRNOG00000028541) #8	RT1-Da (ENSRNOG00000032844) #9	RT1-Db2 (ENSRNOG00000030431) #11	RT1-Db1 (ENSRNOG00000033215) #11	RT1-Ba (ENSRNOG00000000451) #12	RT1-Bb (ENSRNOG00000032708) #13	RT1-DOb (ENSRNOG00000000454) #14	Tap2 (ENSRNOG00000000455) #15	Psmb8 (ENSRNOG00000000456) #16	Tap1 (ENSRNOG00000000457) #17	Psmb9 (ENSRNOG00000000459) #18	RT1-DMb (ENSRNOG00000049491) #19	RT1-DMa (ENSRNOG00000066773) #21	Brd2 (ENSRNOG00000000461) #22	RT1-DOa (ENSRNOG00000026762) #23	RT1-Ha (ENSRNOG00000045908)	RT1-Hb-ps1 (ENSRNOG00000061936)	Col11a2 (ENSRNOG00000000463) #24	Rxrb (ENSRNOG00000000464) #25	Slc39a7 (ENSRNOG00000000465) #26	Hsd17b8 (ENSRNOG00000000466) #27	Ring1 (ENSRNOG00000000467) #28	Vps52 (ENSRNOG00000000470) #30	ENSRNOG00000062487	ENSRNOG00000069209	B3galt4 (ENSRNOG00000000471) #32	Wdr46 (ENSRNOG00000031171) #33	Pfdn6 (ENSRNOG00000000473) #34	Rgl2 (ENSRNOG00000000474) #35
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b #29	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT01030000234972
Cricetinae	ANCESTRAL SPECIES	43	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000154993.k.b.b #10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28
Chinese hamster chok1gshd	MODERN SPECIES	303	ENSCGRG00001001955 #11	Btnl1 (ENSCGRG00001017970) #7	Btnl2 (ENSCGRG00001016923) #8	H2-Ea (ENSCGRG00001015369) #9	ENSCGRG00001015049 #11	ENSCGRG00001021279 ##10	H2-Aa (ENSCGRG00001020824) #12	H2-Ab1 (ENSCGRG00001020630) #13	H2-Ob (ENSCGRG00001020078) #14	ENSCGRG00001019448	Psmb8 (ENSCGRG00001018009) #16	Tap1 (ENSCGRG00001009114) #17	Psmb9 (ENSCGRG00001007415) #18	ENSCGRG00001001555 #19	H2-DMa (ENSCGRG00001000682) #21	Brd2 (ENSCGRG00001018148) #22	H2-Oa (ENSCGRG00001013616) #23	ENSCGRG00001009189	ENSCGRG00001007476	Col11a2 (ENSCGRG00001016209) #24	Rxrb (ENSCGRG00001000192) #25	Slc39a7 (ENSCGRG00001022298) #26	Hsd17b8 (ENSCGRG00001003834) #27	Ring1 (ENSCGRG00001001992) #28	ENSCGRG00001000484 #29	ENSCGRG00001000045	ENSCGRG00001001839	ENSCGRG00001020054 #29	ENSCGRG00001018024 #29	ENSCGRG00001013282 ##29	ENSCGRG00001018149 ##29
Golden Hamster	MODERN SPECIES	856	Notch4 (ENSMAUG00000015895)	ENSMAUG00000009410	ENSMAUG00000015609	Btnl1 (ENSMAUG00000016817) #7	Btnl2 (ENSMAUG00000003530) #8	H2-Eb2 (ENSMAUG00000018151) #10	H2-Aa (ENSMAUG00000003363) #12	H2-Ab1 (ENSMAUG00000020395) #13	H2-Ob (ENSMAUG00000007698) #14	Tap2 (ENSMAUG00000015081) #15	Psmb8 (ENSMAUG00000003396) #16	Tap1 (ENSMAUG00000017718) #17	Psmb9 (ENSMAUG00000007584) #18	ENSMAUG00000008923 #19	H2-DMa (ENSMAUG00000000861) #21	Brd2 (ENSMAUG00000006799) #22	Col11a2 (ENSMAUG00000021348) #24	Rxrb (ENSMAUG00000009043) #25	Slc39a7 (ENSMAUG00000015255) #26	Hsd17b8 (ENSMAUG00000013407) #27	Ring1 (ENSMAUG00000012254) #28
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.l ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a #29	ENSGT00390000008815 #30	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Northern American deer mouse	MODERN SPECIES	13	Btnl2 (ENSPEMG00000007431) #8	H2-Ea (ENSPEMG00000008261) #9	H2-Eb2 (ENSPEMG00000006456) #10	H2-Eb1 (ENSPEMG00000002889) #11	ENSPEMG00000012679 #12	ENSPEMG00000015401 #13	ENSPEMG00000007095 #12	ENSPEMG00000012719 #13	H2-Ob (ENSPEMG00000001796) #14	Tap2 (ENSPEMG00000010503) #15	Psmb8 (ENSPEMG00000012170) #16	Tap1 (ENSPEMG00000012461) #17	Psmb9 (ENSPEMG00000009609) #18	ENSPEMG00000018040 #19	H2-DMa (ENSPEMG00000013203) #21	Brd2 (ENSPEMG00000018138) #22	H2-Oa (ENSPEMG00000011158) #23	ENSPEMG00000015442	ENSPEMG00000026148	Col11a2 (ENSPEMG00000016918) #24	Rxrb (ENSPEMG00000018454) #25	Slc39a7 (ENSPEMG00000003403) #26	Hsd17b8 (ENSPEMG00000012925) #27	Ring1 (ENSPEMG00000019238) #28	ENSPEMG00000024622 #29	ENSPEMG00000030975	ENSPEMG00000030319	Rps18 (ENSPEMG00000005058) #31	B3galt4 (ENSPEMG00000004762) #32	Wdr46 (ENSPEMG00000019179) #33	Pfdn6 (ENSPEMG00000005228) #34
Prairie vole	MODERN SPECIES	352	ENSMOCG00000011431	Btnl1 (ENSMOCG00000018715) #7	Btnl2 (ENSMOCG00000014437) #8	H2-Ea (ENSMOCG00000008786) #9	ENSMOCG00000019721 #11	ENSMOCG00000017941 ##10	ENSMOCG00000013355 #12	H2-Ab1 (ENSMOCG00000008439) #13	H2-Ob (ENSMOCG00000008562) #14	Tap2 (ENSMOCG00000022898) #15	Psmb8 (ENSMOCG00000014719) #16	Tap1 (ENSMOCG00000019762) #17	Psmb9 (ENSMOCG00000005369) #18	ENSMOCG00000022309 #19	H2-DMa (ENSMOCG00000002744) #21	Brd2 (ENSMOCG00000016368) #22	H2-Oa (ENSMOCG00000020236) #23	ENSMOCG00000010963	Col11a2 (ENSMOCG00000016852) #24	Rxrb (ENSMOCG00000000374) #25	Slc39a7 (ENSMOCG00000019993) #26	Hsd17b8 (ENSMOCG00000001695) #27	Ring1 (ENSMOCG00000020973) #28	ENSMOCG00000014473 #29	Vps52 (ENSMOCG00000004229) #30	Rps18 (ENSMOCG00000018024) #31	B3galt4 (ENSMOCG00000011979) #32	Wdr46 (ENSMOCG00000014412) #33	Pfdn6 (ENSMOCG00000022424) #34	Rgl2 (ENSMOCG00000022698) #35	Tapbp (ENSMOCG00000010072) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	369											Psmb8 (ENSNGAG00000001376) #16	Tap1 (ENSNGAG00000012692) #17	Psmb9 (ENSNGAG00000022287) #18	ENSNGAG00000015143 #19	H2-DMa (ENSNGAG00000022770) #21	Brd2 (ENSNGAG00000022459) #22	H2-Oa (ENSNGAG00000015259) #23	ENSNGAG00000014641
Lesser Egyptian jerboa	MODERN SPECIES	41								H2-Ob (ENSJJAG00000022338) #14	ENSJJAG00000003836	Tap2 (ENSJJAG00000004300) #15	Psmb8 (ENSJJAG00000023598) #16	Tap1 (ENSJJAG00000022861) #17	Psmb9 (ENSJJAG00000022884) #18	ENSJJAG00000004664 #19	H2-DMa (ENSJJAG00000012555) #21	Brd2 (ENSJJAG00000010183) #22	H2-Oa (ENSJJAG00000000542) #23	ENSJJAG00000023713	Col11a2 (ENSJJAG00000010448) #24	Rxrb (ENSJJAG00000004710) #25	Slc39a7 (ENSJJAG00000014121) #26	Hsd17b8 (ENSJJAG00000021794) #27	Ring1 (ENSJJAG00000022246) #28	Vps52 (ENSJJAG00000020884) #30	Rps18 (ENSJJAG00000018899) #31	Wdr46 (ENSJJAG00000021960) #33	Pfdn6 (ENSJJAG00000009874) #34	ENSJJAG00000023644	ENSJJAG00000021860 #35	ENSJJAG00000000854 #37	Daxx (ENSJJAG00000022212)
Kangaroo rat	MODERN SPECIES	519	Gpsm3 (ENSDORG00000025609)	ENSDORG00000009936	ENSDORG00000028297	H2-Ea (ENSDORG00000014782) #9	ENSDORG00000024908 #11	ENSDORG00000029602 ##10	ENSDORG00000006991 ##10	ENSDORG00000011904 #11	ENSDORG00000008310 #14	Tap2 (ENSDORG00000008311) #15	Psmb8 (ENSDORG00000028592) #16	Tap1 (ENSDORG00000029698) #17	Psmb9 (ENSDORG00000006231) #18	ENSDORG00000005172 #19	ENSDORG00000005173 #21	Brd2 (ENSDORG00000004497) #22	H2-Oa (ENSDORG00000004499) #23	ENSDORG00000004500	ENSDORG00000024606	Col11a2 (ENSDORG00000013815) #24	Rxrb (ENSDORG00000013816) #25	Slc39a7 (ENSDORG00000013818) #26	Hsd17b8 (ENSDORG00000013819) #27	Ring1 (ENSDORG00000013820) #28	Vps52 (ENSDORG00000013822) #30	ENSDORG00000013825 #31	B3galt4 (ENSDORG00000013826) #32	Wdr46 (ENSDORG00000013827) #33	ENSDORG00000013828 #34	Rgl2 (ENSDORG00000013829) #35	Tapbp (ENSDORG00000013835) #37
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000162892	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00940000162450	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00390000012691.c.b.p #31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00980000198621	ENSGT00940000162450	ENSGT00940000162079 #7	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d.o ##31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Long-tailed chinchilla	MODERN SPECIES	144	ENSCLAG00000011744	ENSCLAG00000015677 #7	BTNL2 (ENSCLAG00000007142) #8	HLA-DRA (ENSCLAG00000009768) #9	ENSCLAG00000013098 #11	ENSCLAG00000016042 #11	ENSCLAG00000009507 #12	HLA-DQB2 (ENSCLAG00000011869) #13	HLA-DOB (ENSCLAG00000011735) #14	TAP2 (ENSCLAG00000012654) #15	PSMB8 (ENSCLAG00000006990) #16	TAP1 (ENSCLAG00000008052) #17	PSMB9 (ENSCLAG00000007918) #18	HLA-DMB (ENSCLAG00000008468) #19	HLA-DMA (ENSCLAG00000014679) #21	BRD2 (ENSCLAG00000009750) #22	HLA-DOA (ENSCLAG00000011531) #23	HLA-DPB1 (ENSCLAG00000013126)	HLA-DPA1 (ENSCLAG00000010668)	COL11A2 (ENSCLAG00000007783) #24	RXRB (ENSCLAG00000013699) #25	SLC39A7 (ENSCLAG00000014475) #26	HSD17B8 (ENSCLAG00000007885) #27	RING1 (ENSCLAG00000009149) #28	VPS52 (ENSCLAG00000008115) #30	RPS18 (ENSCLAG00000008982) ##31	WDR46 (ENSCLAG00000007512) #33	PFDN6 (ENSCLAG00000010475) #34	RGL2 (ENSCLAG00000009780) #35	TAPBP (ENSCLAG00000010992) #37	DAXX (ENSCLAG00000010016)
Degu	MODERN SPECIES	46	ENSODEG00000017653	ENSODEG00000017401	ENSODEG00000017414 #8	ENSODEG00000017398	ENSODEG00000017435 #10	ENSODEG00000017402 ##10	ENSODEG00000017510 #12	ENSODEG00000017249 #13	HLA-DOB (ENSODEG00000017495) #14	TAP1 (ENSODEG00000017484) #17	PSMB9 (ENSODEG00000017656) #18	TAP2 (ENSODEG00000017797) #15	PSMB8 (ENSODEG00000017662) #16	HLA-DMB (ENSODEG00000017802) #19	ENSODEG00000017381 #21	BRD2 (ENSODEG00000017239) #22	HLA-DOA (ENSODEG00000017569) #23	HLA-DPA1 (ENSODEG00000017716)	COL11A2 (ENSODEG00000017513) #24	RXRB (ENSODEG00000017146) #25	SLC39A7 (ENSODEG00000017361) #26	HSD17B8 (ENSODEG00000017486) #27	RING1 (ENSODEG00000017691) #28	VPS52 (ENSODEG00000017744) #30	ENSODEG00000017344 ##31	B3GALT4 (ENSODEG00000017281) #32	WDR46 (ENSODEG00000017342) #33	ENSODEG00000017649 #34	RGL2 (ENSODEG00000017326) #35	TAPBP (ENSODEG00000017301) #37	DAXX (ENSODEG00000017044)
Guinea pig	MODERN SPECIES	15	ENSCPOG00000023019 #7	BTNL2 (ENSCPOG00000004277) #8	HLA-DRA (ENSCPOG00000012309) #9	ENSCPOG00000036465 #11	ENSCPOG00000003574 ##10	ENSCPOG00000040083 ##10	ENSCPOG00000014463	HLA-DQB2 (ENSCPOG00000038606) #13	HLA-DOB (ENSCPOG00000033895) #14	TAP2 (ENSCPOG00000038951) #15	PSMB8 (ENSCPOG00000000729) #16	TAP1 (ENSCPOG00000026988) #17	PSMB9 (ENSCPOG00000002121) #18	HLA-DMB (ENSCPOG00000002810) #19	HLA-DMA (ENSCPOG00000015044) #21	BRD2 (ENSCPOG00000002811) #22	HLA-DOA (ENSCPOG00000012562) #23	ENSCPOG00000002427	ENSCPOG00000032859	ENSCPOG00000024142	ENSCPOG00000035477	COL11A2 (ENSCPOG00000020466) #24	RXRB (ENSCPOG00000013936) #25	SLC39A7 (ENSCPOG00000023790) #26	HSD17B8 (ENSCPOG00000013940) #27	RING1 (ENSCPOG00000013943) #28	VPS52 (ENSCPOG00000013947) #30	RPS18 (ENSCPOG00000019675) #31	B3GALT4 (ENSCPOG00000012731) #32	WDR46 (ENSCPOG00000012733) #33	PFDN6 (ENSCPOG00000019520) #34
Naked mole-rat female	MODERN SPECIES	4	GPSM3 (ENSHGLG00000012807)	HLA-DRA (ENSHGLG00000012243) #9	ENSHGLG00000012074 #10	ENSHGLG00000011873 ##10	ENSHGLG00000011613 ##10	ENSHGLG00000011398	ENSHGLG00000043086	HLA-DQB2 (ENSHGLG00000038840) #13	HLA-DOB (ENSHGLG00000016652) #14	TAP2 (ENSHGLG00000019356) #15	PSMB8 (ENSHGLG00000017087) #16	TAP1 (ENSHGLG00000017081) #17	PSMB9 (ENSHGLG00000036914) #18	HLA-DMB (ENSHGLG00000017060) #19	HLA-DMA (ENSHGLG00000017048) #21	BRD2 (ENSHGLG00000019334) #22	HLA-DOA (ENSHGLG00000019255) #23	HLA-DPA1 (ENSHGLG00000019266)	HLA-DPB1 (ENSHGLG00000019389)	COL11A2 (ENSHGLG00000018531) #24	RXRB (ENSHGLG00000018456) #25	SLC39A7 (ENSHGLG00000018434) #26	HSD17B8 (ENSHGLG00000019497) #27	RING1 (ENSHGLG00000019474) #28	VPS52 (ENSHGLG00000017226) #30	B3GALT4 (ENSHGLG00000046221) #32	WDR46 (ENSHGLG00000017190) #33	PFDN6 (ENSHGLG00000017170) #34	RGL2 (ENSHGLG00000017158) #35	TAPBP (ENSHGLG00000017138) #37	ZBTB22 (ENSHGLG00000017146) #36
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b #10	ENSGT00940000155371 #11	ENSGT00940000154993.k.a ##10	ENSGT00940000161821 #12	ENSGT00940000154723.b #13	ENSGT00940000162353 #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Eurasian red squirrel	MODERN SPECIES	16	HLA-DRA (ENSSVLG00005007588) #9	ENSSVLG00005007546 #10	ENSSVLG00005007511 #11	ENSSVLG00005007482 ##10	ENSSVLG00005007455 #12	HLA-DQB2 (ENSSVLG00005007368) #13	ENSSVLG00005007173 #12	ENSSVLG00005006864 #13	HLA-DOB (ENSSVLG00005006746) #14	TAP2 (ENSSVLG00005006696) #15	PSMB8 (ENSSVLG00005006647) #16	TAP1 (ENSSVLG00005006618) #17	PSMB9 (ENSSVLG00005006563) #18	HLA-DMB (ENSSVLG00005006515) #19	HLA-DMA (ENSSVLG00005006465) #21	BRD2 (ENSSVLG00005006374) #22	HLA-DOA (ENSSVLG00005006335) #23	HLA-DPA1 (ENSSVLG00005006304)	HLA-DPB1 (ENSSVLG00005006269)	COL11A2 (ENSSVLG00005005202) #24	RXRB (ENSSVLG00005004952) #25	SLC39A7 (ENSSVLG00005004925) #26	HSD17B8 (ENSSVLG00005004902) #27	RING1 (ENSSVLG00005004804) #28	ENSSVLG00005004778	VPS52 (ENSSVLG00005004757) #30	RPS18 (ENSSVLG00005004721) #31	B3GALT4 (ENSSVLG00005004704) #32	WDR46 (ENSSVLG00005004694) #33	ENSSVLG00005004670 #34	RGL2 (ENSSVLG00005004647) #35
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000154993.k.b #10	ENSGT00940000154993.k.a ##10	ENSGT00940000161821.k #12	ENSGT00940000154723.b #13	ENSGT00940000161821.l.a #12	ENSGT00940000162353.i #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Marmotini_b	ANCESTRAL SPECIES	8								ENSGT00940000162353.i #14	ENSGT00860000136204	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Arctic ground squirrel	MODERN SPECIES	25														HLA-DMB (ENSUPAG00010005014) #19	HLA-DMA (ENSUPAG00010005022) #21	BRD2 (ENSUPAG00010005033) #22	HLA-DOA (ENSUPAG00010005068) #23	HLA-DPB1 (ENSUPAG00010005123)	HLA-DPA1 (ENSUPAG00010012558)	COL11A2 (ENSUPAG00010012591) #24	RXRB (ENSUPAG00010013376) #25	SLC39A7 (ENSUPAG00010013405) #26	HSD17B8 (ENSUPAG00010013412) #27	RING1 (ENSUPAG00010013424) #28	VPS52 (ENSUPAG00010013433) #30	ENSUPAG00010013506 ##31	B3GALT4 (ENSUPAG00010013513) #32	WDR46 (ENSUPAG00010013516) #33	PFDN6 (ENSUPAG00010013562) #34	RGL2 (ENSUPAG00010013583) #35	TAPBP (ENSUPAG00010013596) #37
Squirrel	MODERN SPECIES	76							ENSSTOG00000028098 ##29	HLA-DOB (ENSSTOG00000003405) #14	ENSSTOG00000030715	TAP2 (ENSSTOG00000003413) #15	PSMB8 (ENSSTOG00000019724) #16	TAP1 (ENSSTOG00000003451) #17	PSMB9 (ENSSTOG00000003475) #18	HLA-DMB (ENSSTOG00000019821) #19	HLA-DMA (ENSSTOG00000009246) #21	BRD2 (ENSSTOG00000010807) #22	HLA-DOA (ENSSTOG00000010820) #23	HLA-DPA1 (ENSSTOG00000003558)	HLA-DPB1 (ENSSTOG00000003567)	COL11A2 (ENSSTOG00000003578) #24	RXRB (ENSSTOG00000027099) #25	SLC39A7 (ENSSTOG00000014304) #26	HSD17B8 (ENSSTOG00000020853) #27	RING1 (ENSSTOG00000026166) #28	VPS52 (ENSSTOG00000002397) #30	ENSSTOG00000002417 ##31	B3GALT4 (ENSSTOG00000024877) #32	WDR46 (ENSSTOG00000002433) #33	PFDN6 (ENSSTOG00000027428) #34	RGL2 (ENSSTOG00000024728) #35	TAPBP (ENSSTOG00000025004) #37
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	24	ENSMMMG00000023121	RAB8A (ENSMMMG00000023118)	TPM4 (ENSMMMG00000022621)	ENSMMMG00000022612	ENSMMMG00000022610	ENSMMMG00000022564	ENSMMMG00000022557	CYP4F2 (ENSMMMG00000022533)	CYP4F8 (ENSMMMG00000022511)	CYP4F22 (ENSMMMG00000022504)	PGLYRP2 (ENSMMMG00000022496)	RASAL3 (ENSMMMG00000022474)	ENSMMMG00000022459	AKAP8L (ENSMMMG00000022438)	AKAP8 (ENSMMMG00000022416)	ENSMMMG00000022411 #22	ENSMMMG00000022407	EPHX3 (ENSMMMG00000022401)	NOTCH3 (ENSMMMG00000022356)	ENSMMMG00000022351	ILVBL (ENSMMMG00000022300)	SYDE1 (ENSMMMG00000022294)	OR1I1 (ENSMMMG00000022293)	CASP14 (ENSMMMG00000022289)	CCDC105 (ENSMMMG00000022286)	SLC1A6 (ENSMMMG00000022279)	ENSMMMG00000022278	ENSMMMG00000022277	ENSMMMG00000022259	ENSMMMG00000022258	ENSMMMG00000022253
Alpin marmot	MODERN SPECIES	20	ENSMMMG00000018777 #10	ENSMMMG00000018780 ##10	ENSMMMG00000018785 #12	ENSMMMG00000018797	ENSMMMG00000018808 #13	ENSMMMG00000020395 ##29	ENSMMMG00000024056 #13	ENSMMMG00000024215 ##29	HLA-DOB (ENSMMMG00000024217) #14	TAP2 (ENSMMMG00000024218) #15	PSMB8 (ENSMMMG00000024220) #16	TAP1 (ENSMMMG00000024221) #17	PSMB9 (ENSMMMG00000024222) #18	HLA-DMB (ENSMMMG00000024223) #19	HLA-DMA (ENSMMMG00000024224) #21	BRD2 (ENSMMMG00000024225) #22	HLA-DOA (ENSMMMG00000024226) #23	HLA-DPA1 (ENSMMMG00000024227)	HLA-DPB1 (ENSMMMG00000024228)	COL11A2 (ENSMMMG00000024229) #24	RXRB (ENSMMMG00000024230) #25	SLC39A7 (ENSMMMG00000024231) #26	HSD17B8 (ENSMMMG00000024232) #27	RING1 (ENSMMMG00000024233) #28	VPS52 (ENSMMMG00000024234) #30	ENSMMMG00000024235 ##31	B3GALT4 (ENSMMMG00000024236) #32	WDR46 (ENSMMMG00000024237) #33	PFDN6 (ENSMMMG00000024238) #34	RGL2 (ENSMMMG00000024239) #35	TAPBP (ENSMMMG00000024240) #37
Lagomorpha	ANCESTRAL SPECIES	2		ENSGT00940000164957	ENSGT00940000162484 #8	ENSGT00940000160997 #9	ENSGT00940000155371 #11	ENSGT00940000154723.b #13	ENSGT00940000154993 #10	ENSGT00940000161821 #12	ENSGT00940000162353 #14	ENSGT00940000160499 #15	ENSGT00940000157293 #16	ENSGT00940000159023 #17	ENSGT00940000159897 #18	ENSGT00940000160381 #19	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000159762 #24	ENSGT00940000159208.B #25	ENSGT00940000160076 #26	ENSGT00940000160668 #27	ENSGT00940000161022 #28	ENSGT00390000008815 #30	ENSGT00390000012691.d ##31	ENSGT00940000161798 #32	ENSGT00390000007075 #33	ENSGT00390000010512 #34	ENSGT00940000161403 #35	ENSGT00940000159200 #37
Rabbit	MODERN SPECIES	3	ENSOCUG00000021762	ENSOCUG00000006769 #8	ENSOCUG00000025822 #7	HLA-DRA (ENSOCUG00000009103) #9	ENSOCUG00000029731 #10	ENSOCUG00000030453 #11	HLA-DQB1 (ENSOCUG00000002485) #13	ENSOCUG00000002480 #12	HLA-DOB (ENSOCUG00000029437) #14	TAP2 (ENSOCUG00000002489) #15	PSMB8 (ENSOCUG00000002131) #16	TAP1 (ENSOCUG00000002135) #17	ENSOCUG00000002139 #18	HLA-DMB (ENSOCUG00000026567) #19	HLA-DMA (ENSOCUG00000022573) #21	BRD2 (ENSOCUG00000003097) #22	ENSOCUG00000003319 #23	HLA-DPB1 (ENSOCUG00000008721)	COL11A2 (ENSOCUG00000016497) #24	RXRB (ENSOCUG00000011590) #25	SLC39A7 (ENSOCUG00000011598) #26	HSD17B8 (ENSOCUG00000020995) #27	VPS52 (ENSOCUG00000010533) #30	ENSOCUG00000010546 ##31	B3GALT4 (ENSOCUG00000010550) #32	ENSOCUG00000010554 #33	PFDN6 (ENSOCUG00000010559) #34	RGL2 (ENSOCUG00000026930) #35	TAPBP (ENSOCUG00000010563) #37	DAXX (ENSOCUG00000010574)	SMIM40 (ENSOCUG00000037016)
Pika	MODERN SPECIES	3165														ENSOPRG00000007415 #19	HLA-DMA (ENSOPRG00000007424) #21	BRD2 (ENSOPRG00000007431) #22	HLA-DOA (ENSOPRG00000007456) #23	ENSOPRG00000007464
Tree shrew	MODERN SPECIES	5170															HLA-DMB (ENSTBEG00000016414) #19	BRD2 (ENSTBEG00000016659) #22