Gnathostomata ANCESTRAL SPECIES 1640 ENSGT00940000154143 ENSGT00940000153385.b.a.b #22 Euteleostomi ANCESTRAL SPECIES 405 ENSGT00940000155431.b ENSGT00940000159023 #17 ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00390000008815 #30 ENSGT00390000012691 #31 Sarcopterygii ANCESTRAL SPECIES 274 ENSGT00940000155431.b ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT01100000263475 ENSGT00980000198488 #29 ENSGT00940000159023 #17 ENSGT00940000160668 #27 ENSGT00390000008815 #30 ENSGT00390000012691 #31 ENSGT00390000007075 #33 Tetrapoda ANCESTRAL SPECIES 167 ENSGT00940000155431.b ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00390000010512 #34 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000012691.d ##31 ENSGT00390000012691.c.b #31 ENSGT00390000008815 #30 ENSGT00940000159023 #17 Amniota ANCESTRAL SPECIES 74 ENSGT00940000159023 #17 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00940000155371 #11 ENSGT00940000160997 #9 ENSGT00950000183127.b ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.a ##31 ENSGT00390000007075 #33 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000010512 #34 Mammalia ANCESTRAL SPECIES 89 ENSGT00940000154723 #13 ENSGT00940000161847 ENSGT00950000183127.b ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00980000198488.n ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Theria ANCESTRAL SPECIES 4 ENSGT00940000160798 ENSGT00920000149187 ENSGT00940000162382 ENSGT00940000155779.a.b ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00980000198488.n ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 ENSGT00920000150736 Eutheria ANCESTRAL SPECIES 9 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000161847 ENSGT00940000155371 #11 ENSGT00940000154993 #10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993 #10 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000161821 #12 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993 #10 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000161821 #12 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Glires ANCESTRAL SPECIES 5 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993 #10 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000161821 #12 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.l ##10 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Murinae ANCESTRAL SPECIES 18 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Mus ANCESTRAL SPECIES 16 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00980000198488.m.a.b.a.b.a.a.a.c #29 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Mus_A ANCESTRAL SPECIES 10 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381.h #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #29 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Mus_B ANCESTRAL SPECIES 9 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381.h #19 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #29 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.`b #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Mouse MODERN SPECIES 8 Btnl1 (ENSMUSG00000062638) #7 Btnl2 (ENSMUSG00000024340) #8 H2-Ea (ENSMUSG00000036322) #9 H2-Eb2 (ENSMUSG00000067341) #10 H2-Eb1 (ENSMUSG00000060586) #11 H2-Aa (ENSMUSG00000036594) #12 H2-Ab1 (ENSMUSG00000073421) #13 H2-Ob (ENSMUSG00000041538) #14 Tap2 (ENSMUSG00000024339) #15 Psmb8 (ENSMUSG00000024338) #16 Tap1 (ENSMUSG00000037321) #17 Psmb9 (ENSMUSG00000096727) #18 H2-DMb1 (ENSMUSG00000079547) #19 H2-DMb2 (ENSMUSG00000037548) #20 H2-DMa (ENSMUSG00000037649) #21 Brd2 (ENSMUSG00000024335) #22 H2-Oa (ENSMUSG00000024334) #23 Col11a2 (ENSMUSG00000024330) #24 Rxrb (ENSMUSG00000039656) #25 Slc39a7 (ENSMUSG00000024327) #26 Hsd17b8 (ENSMUSG00000073422) #27 Ring1 (ENSMUSG00000024325) #28 H2-K1 (ENSMUSG00000061232) #29 Vps52 (ENSMUSG00000024319) #30 Rps18 (ENSMUSG00000008668) #31 B3galt4 (ENSMUSG00000067370) #32 Wdr46 (ENSMUSG00000024312) #33 Pfdn6 (ENSMUSG00000024309) #34 Rgl2 (ENSMUSG00000041354) #35 Zbtb22 (ENSMUSG00000051390) #36 Tapbp (ENSMUSG00000024308) #37 Mus_C ANCESTRAL SPECIES 9 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381.h #19 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a ##29 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.`b #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Steppe mouse MODERN SPECIES 2564 Btnl1 (ENSMSIG00000010748) #7 Btnl2 (ENSMSIG00000010760) #8 H2-Ea (ENSMSIG00000010776) #9 H2-Eb2 (ENSMSIG00000010788) #10 ENSMSIG00000010807 #11 H2-Aa (ENSMSIG00000010823) #12 ENSMSIG00000010843 #13 H2-Ob (ENSMSIG00000010868) #14 Tap2 (ENSMSIG00000010919) #15 ENSMSIG00000010972 Psmb8 (ENSMSIG00000010986) #16 ENSMSIG00000011012 #17 Psmb9 (ENSMSIG00000011042) #18 H2-DMb1 (ENSMSIG00000011055) #19 H2-DMa (ENSMSIG00000011088) #21 Brd2 (ENSMSIG00000011118) #22 H2-Oa (ENSMSIG00000011198) #23 ENSMSIG00000011214 Col11a2 (ENSMSIG00000011347) #24 Rxrb (ENSMSIG00000012091) #25 Slc39a7 (ENSMSIG00000012137) #26 ENSMSIG00000012153 #27 Ring1 (ENSMSIG00000012190) #28 ENSMSIG00000012243 ENSMSIG00000012249 ##29 Vps52 (ENSMSIG00000012295) #30 Rps18 (ENSMSIG00000012382) #31 B3galt4 (ENSMSIG00000012406) #32 Wdr46 (ENSMSIG00000012419) #33 Pfdn6 (ENSMSIG00000012469) #34 Rgl2 (ENSMSIG00000012505) #35 spretus MODERN SPECIES 8 Btnl1 (MGP_SPRETEiJ_G0022363) #7 Btnl2 (MGP_SPRETEiJ_G0022362) #8 H2-Eb2 (MGP_SPRETEiJ_G0022361) #10 MGP_SPRETEiJ_G0022360 #11 H2-Aa (MGP_SPRETEiJ_G0022359) #12 H2-Ab1 (MGP_SPRETEiJ_G0022358) #13 H2-Ob (MGP_SPRETEiJ_G0022357) #14 MGP_SPRETEiJ_G0022356 Tap2 (MGP_SPRETEiJ_G0022355) #15 Psmb8 (MGP_SPRETEiJ_G0022354) #16 Tap1 (MGP_SPRETEiJ_G0022353) #17 Psmb9 (MGP_SPRETEiJ_G0022352) #18 H2-DMb2 (MGP_SPRETEiJ_G0022351) #20 MGP_SPRETEiJ_G0022350 #19 H2-DMa (MGP_SPRETEiJ_G0022349) #21 Brd2 (MGP_SPRETEiJ_G0022348) #22 H2-Oa (MGP_SPRETEiJ_G0022347) #23 Col11a2 (MGP_SPRETEiJ_G0022346) #24 Rxrb (MGP_SPRETEiJ_G0022345) #25 Slc39a7 (MGP_SPRETEiJ_G0022344) #26 Hsd17b8 (MGP_SPRETEiJ_G0022343) #27 Ring1 (MGP_SPRETEiJ_G0022342) #28 MGP_SPRETEiJ_G0022340 ##31 B3galt4 (MGP_SPRETEiJ_G0022339) #32 Wdr46 (MGP_SPRETEiJ_G0022338) #33 Pfdn6 (MGP_SPRETEiJ_G0022337) #34 Rgl2 (MGP_SPRETEiJ_G0022336) #35 Zbtb22 (MGP_SPRETEiJ_G0022335) #36 Tapbp (MGP_SPRETEiJ_G0022334) #37 Daxx (MGP_SPRETEiJ_G0022333) Cd320 (MGP_SPRETEiJ_G0022332) Ryukyu mouse MODERN SPECIES 8 Btnl1 (MGP_CAROLIEiJ_G0021457) #7 Btnl2 (MGP_CAROLIEiJ_G0021456) #8 H2-Eb2 (MGP_CAROLIEiJ_G0021455) #10 MGP_CAROLIEiJ_G0021454 #11 H2-Aa (MGP_CAROLIEiJ_G0021453) #12 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #13 H2-Ob (MGP_CAROLIEiJ_G0021451) #14 MGP_CAROLIEiJ_G0021450 Tap2 (MGP_CAROLIEiJ_G0021449) #15 Psmb8 (MGP_CAROLIEiJ_G0021448) #16 Tap1 (MGP_CAROLIEiJ_G0021447) #17 Psmb9 (MGP_CAROLIEiJ_G0021446) #18 MGP_CAROLIEiJ_G0021445 #19 MGP_CAROLIEiJ_G0021444 #19 H2-DMa (MGP_CAROLIEiJ_G0021443) #21 Brd2 (MGP_CAROLIEiJ_G0021442) #22 H2-Oa (MGP_CAROLIEiJ_G0021441) #23 Col11a2 (MGP_CAROLIEiJ_G0021440) #24 Rxrb (MGP_CAROLIEiJ_G0021439) #25 Slc39a7 (MGP_CAROLIEiJ_G0021438) #26 Hsd17b8 (MGP_CAROLIEiJ_G0021437) #27 Ring1 (MGP_CAROLIEiJ_G0021436) #28 MGP_CAROLIEiJ_G0021435 #29 MGP_CAROLIEiJ_G0021434 ##29 MGP_CAROLIEiJ_G0021432 MGP_CAROLIEiJ_G0021431 MGP_CAROLIEiJ_G0021430 ##29 MGP_CAROLIEiJ_G0021429 ##29 Rps18 (MGP_CAROLIEiJ_G0021428) #31 B3galt4 (MGP_CAROLIEiJ_G0021427) #32 Wdr46 (MGP_CAROLIEiJ_G0021426) #33 Shrew mouse MODERN SPECIES 9 MGP_PahariEiJ_G0020455 Tsbp1 (MGP_PahariEiJ_G0020454) Btnl1 (MGP_PahariEiJ_G0020453) #7 Btnl2 (MGP_PahariEiJ_G0020452) #8 H2-Eb2 (MGP_PahariEiJ_G0020451) #10 MGP_PahariEiJ_G0020450 #11 H2-Aa (MGP_PahariEiJ_G0020449) #12 H2-Ab1 (MGP_PahariEiJ_G0020448) #13 H2-Ob (MGP_PahariEiJ_G0020447) #14 MGP_PahariEiJ_G0020446 Tap2 (MGP_PahariEiJ_G0020445) #15 Psmb8 (MGP_PahariEiJ_G0020444) #16 Tap1 (MGP_PahariEiJ_G0020443) #17 Psmb9 (MGP_PahariEiJ_G0020442) #18 H2-DMa (MGP_PahariEiJ_G0020441) #21 Brd2 (MGP_PahariEiJ_G0020440) #22 H2-Oa (MGP_PahariEiJ_G0020439) #23 Col11a2 (MGP_PahariEiJ_G0020438) #24 Rxrb (MGP_PahariEiJ_G0020437) #25 Slc39a7 (MGP_PahariEiJ_G0020436) #26 Hsd17b8 (MGP_PahariEiJ_G0020435) #27 Ring1 (MGP_PahariEiJ_G0020434) #28 MGP_PahariEiJ_G0020433 #31 B3galt4 (MGP_PahariEiJ_G0020432) #32 Wdr46 (MGP_PahariEiJ_G0020431) #33 Pfdn6 (MGP_PahariEiJ_G0020430) #34 Rgl2 (MGP_PahariEiJ_G0020429) #35 Zbtb22 (MGP_PahariEiJ_G0020428) #36 Tapbp (MGP_PahariEiJ_G0020427) #37 Daxx (MGP_PahariEiJ_G0020426) Cd320 (MGP_PahariEiJ_G0020425) Rat MODERN SPECIES 12 Tsbp1 (ENSRNOG00000039398) Btnl3 (ENSRNOG00000039396) #7 Btnl2 (ENSRNOG00000028541) #8 RT1-Da (ENSRNOG00000032844) #9 RT1-Db2 (ENSRNOG00000030431) #11 RT1-Db1 (ENSRNOG00000033215) #11 RT1-Ba (ENSRNOG00000000451) #12 RT1-Bb (ENSRNOG00000032708) #13 RT1-DOb (ENSRNOG00000000454) #14 Tap2 (ENSRNOG00000000455) #15 Psmb8 (ENSRNOG00000000456) #16 Tap1 (ENSRNOG00000000457) #17 Psmb9 (ENSRNOG00000000459) #18 RT1-DMb (ENSRNOG00000049491) #19 RT1-DMa (ENSRNOG00000066773) #21 Brd2 (ENSRNOG00000000461) #22 RT1-DOa (ENSRNOG00000026762) #23 RT1-Ha (ENSRNOG00000045908) RT1-Hb-ps1 (ENSRNOG00000061936) Col11a2 (ENSRNOG00000000463) #24 Rxrb (ENSRNOG00000000464) #25 Slc39a7 (ENSRNOG00000000465) #26 Hsd17b8 (ENSRNOG00000000466) #27 Ring1 (ENSRNOG00000000467) #28 Vps52 (ENSRNOG00000000470) #30 ENSRNOG00000062487 ENSRNOG00000069209 B3galt4 (ENSRNOG00000000471) #32 Wdr46 (ENSRNOG00000031171) #33 Pfdn6 (ENSRNOG00000000473) #34 Rgl2 (ENSRNOG00000000474) #35 Cricetidae ANCESTRAL SPECIES 9 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b #29 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000154993.k.b.b #10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 Chinese hamster chok1gshd MODERN SPECIES 303 ENSCGRG00001001955 #11 Btnl1 (ENSCGRG00001017970) #7 Btnl2 (ENSCGRG00001016923) #8 H2-Ea (ENSCGRG00001015369) #9 ENSCGRG00001015049 #11 ENSCGRG00001021279 ##10 H2-Aa (ENSCGRG00001020824) #12 H2-Ab1 (ENSCGRG00001020630) #13 H2-Ob (ENSCGRG00001020078) #14 ENSCGRG00001019448 Psmb8 (ENSCGRG00001018009) #16 Tap1 (ENSCGRG00001009114) #17 Psmb9 (ENSCGRG00001007415) #18 ENSCGRG00001001555 #19 H2-DMa (ENSCGRG00001000682) #21 Brd2 (ENSCGRG00001018148) #22 H2-Oa (ENSCGRG00001013616) #23 ENSCGRG00001009189 ENSCGRG00001007476 Col11a2 (ENSCGRG00001016209) #24 Rxrb (ENSCGRG00001000192) #25 Slc39a7 (ENSCGRG00001022298) #26 Hsd17b8 (ENSCGRG00001003834) #27 Ring1 (ENSCGRG00001001992) #28 ENSCGRG00001000484 #29 ENSCGRG00001000045 ENSCGRG00001001839 ENSCGRG00001020054 #29 ENSCGRG00001018024 #29 ENSCGRG00001013282 ##29 ENSCGRG00001018149 ##29 Golden Hamster MODERN SPECIES 856 Notch4 (ENSMAUG00000015895) ENSMAUG00000009410 ENSMAUG00000015609 Btnl1 (ENSMAUG00000016817) #7 Btnl2 (ENSMAUG00000003530) #8 H2-Eb2 (ENSMAUG00000018151) #10 H2-Aa (ENSMAUG00000003363) #12 H2-Ab1 (ENSMAUG00000020395) #13 H2-Ob (ENSMAUG00000007698) #14 Tap2 (ENSMAUG00000015081) #15 Psmb8 (ENSMAUG00000003396) #16 Tap1 (ENSMAUG00000017718) #17 Psmb9 (ENSMAUG00000007584) #18 ENSMAUG00000008923 #19 H2-DMa (ENSMAUG00000000861) #21 Brd2 (ENSMAUG00000006799) #22 Col11a2 (ENSMAUG00000021348) #24 Rxrb (ENSMAUG00000009043) #25 Slc39a7 (ENSMAUG00000015255) #26 Hsd17b8 (ENSMAUG00000013407) #27 Ring1 (ENSMAUG00000012254) #28 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.l ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a #29 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Northern American deer mouse MODERN SPECIES 13 Btnl2 (ENSPEMG00000007431) #8 H2-Ea (ENSPEMG00000008261) #9 H2-Eb2 (ENSPEMG00000006456) #10 H2-Eb1 (ENSPEMG00000002889) #11 ENSPEMG00000012679 #12 ENSPEMG00000015401 #13 ENSPEMG00000007095 #12 ENSPEMG00000012719 #13 H2-Ob (ENSPEMG00000001796) #14 Tap2 (ENSPEMG00000010503) #15 Psmb8 (ENSPEMG00000012170) #16 Tap1 (ENSPEMG00000012461) #17 Psmb9 (ENSPEMG00000009609) #18 ENSPEMG00000018040 #19 H2-DMa (ENSPEMG00000013203) #21 Brd2 (ENSPEMG00000018138) #22 H2-Oa (ENSPEMG00000011158) #23 ENSPEMG00000015442 ENSPEMG00000026148 Col11a2 (ENSPEMG00000016918) #24 Rxrb (ENSPEMG00000018454) #25 Slc39a7 (ENSPEMG00000003403) #26 Hsd17b8 (ENSPEMG00000012925) #27 Ring1 (ENSPEMG00000019238) #28 ENSPEMG00000024622 #29 ENSPEMG00000030975 ENSPEMG00000030319 Rps18 (ENSPEMG00000005058) #31 B3galt4 (ENSPEMG00000004762) #32 Wdr46 (ENSPEMG00000019179) #33 Pfdn6 (ENSPEMG00000005228) #34 Prairie vole MODERN SPECIES 352 ENSMOCG00000011431 Btnl1 (ENSMOCG00000018715) #7 Btnl2 (ENSMOCG00000014437) #8 H2-Ea (ENSMOCG00000008786) #9 ENSMOCG00000019721 #11 ENSMOCG00000017941 ##10 ENSMOCG00000013355 #12 H2-Ab1 (ENSMOCG00000008439) #13 H2-Ob (ENSMOCG00000008562) #14 Tap2 (ENSMOCG00000022898) #15 Psmb8 (ENSMOCG00000014719) #16 Tap1 (ENSMOCG00000019762) #17 Psmb9 (ENSMOCG00000005369) #18 ENSMOCG00000022309 #19 H2-DMa (ENSMOCG00000002744) #21 Brd2 (ENSMOCG00000016368) #22 H2-Oa (ENSMOCG00000020236) #23 ENSMOCG00000010963 Col11a2 (ENSMOCG00000016852) #24 Rxrb (ENSMOCG00000000374) #25 Slc39a7 (ENSMOCG00000019993) #26 Hsd17b8 (ENSMOCG00000001695) #27 Ring1 (ENSMOCG00000020973) #28 ENSMOCG00000014473 #29 Vps52 (ENSMOCG00000004229) #30 Rps18 (ENSMOCG00000018024) #31 B3galt4 (ENSMOCG00000011979) #32 Wdr46 (ENSMOCG00000014412) #33 Pfdn6 (ENSMOCG00000022424) #34 Rgl2 (ENSMOCG00000022698) #35 Tapbp (ENSMOCG00000010072) #37 Upper Galilee mountains blind mole rat MODERN SPECIES 369 Psmb8 (ENSNGAG00000001376) #16 Tap1 (ENSNGAG00000012692) #17 Psmb9 (ENSNGAG00000022287) #18 ENSNGAG00000015143 #19 H2-DMa (ENSNGAG00000022770) #21 Brd2 (ENSNGAG00000022459) #22 H2-Oa (ENSNGAG00000015259) #23 ENSNGAG00000014641 Lesser Egyptian jerboa MODERN SPECIES 41 H2-Ob (ENSJJAG00000022338) #14 ENSJJAG00000003836 Tap2 (ENSJJAG00000004300) #15 Psmb8 (ENSJJAG00000023598) #16 Tap1 (ENSJJAG00000022861) #17 Psmb9 (ENSJJAG00000022884) #18 ENSJJAG00000004664 #19 H2-DMa (ENSJJAG00000012555) #21 Brd2 (ENSJJAG00000010183) #22 H2-Oa (ENSJJAG00000000542) #23 ENSJJAG00000023713 Col11a2 (ENSJJAG00000010448) #24 Rxrb (ENSJJAG00000004710) #25 Slc39a7 (ENSJJAG00000014121) #26 Hsd17b8 (ENSJJAG00000021794) #27 Ring1 (ENSJJAG00000022246) #28 Vps52 (ENSJJAG00000020884) #30 Rps18 (ENSJJAG00000018899) #31 Wdr46 (ENSJJAG00000021960) #33 Pfdn6 (ENSJJAG00000009874) #34 ENSJJAG00000023644 ENSJJAG00000021860 #35 ENSJJAG00000000854 #37 Daxx (ENSJJAG00000022212) Kangaroo rat MODERN SPECIES 519 Gpsm3 (ENSDORG00000025609) ENSDORG00000009936 ENSDORG00000028297 H2-Ea (ENSDORG00000014782) #9 ENSDORG00000024908 #11 ENSDORG00000029602 ##10 ENSDORG00000006991 ##10 ENSDORG00000011904 #11 ENSDORG00000008310 #14 Tap2 (ENSDORG00000008311) #15 Psmb8 (ENSDORG00000028592) #16 Tap1 (ENSDORG00000029698) #17 Psmb9 (ENSDORG00000006231) #18 ENSDORG00000005172 #19 ENSDORG00000005173 #21 Brd2 (ENSDORG00000004497) #22 H2-Oa (ENSDORG00000004499) #23 ENSDORG00000004500 ENSDORG00000024606 Col11a2 (ENSDORG00000013815) #24 Rxrb (ENSDORG00000013816) #25 Slc39a7 (ENSDORG00000013818) #26 Hsd17b8 (ENSDORG00000013819) #27 Ring1 (ENSDORG00000013820) #28 Vps52 (ENSDORG00000013822) #30 ENSDORG00000013825 #31 B3galt4 (ENSDORG00000013826) #32 Wdr46 (ENSDORG00000013827) #33 ENSDORG00000013828 #34 Rgl2 (ENSDORG00000013829) #35 Tapbp (ENSDORG00000013835) #37 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000162892 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00940000162450 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00390000012691.c.b.p #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00980000198621 ENSGT00940000162450 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d.o ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Long-tailed chinchilla MODERN SPECIES 144 ENSCLAG00000011744 ENSCLAG00000015677 #7 BTNL2 (ENSCLAG00000007142) #8 HLA-DRA (ENSCLAG00000009768) #9 ENSCLAG00000013098 #11 ENSCLAG00000016042 #11 ENSCLAG00000009507 #12 HLA-DQB2 (ENSCLAG00000011869) #13 HLA-DOB (ENSCLAG00000011735) #14 TAP2 (ENSCLAG00000012654) #15 PSMB8 (ENSCLAG00000006990) #16 TAP1 (ENSCLAG00000008052) #17 PSMB9 (ENSCLAG00000007918) #18 HLA-DMB (ENSCLAG00000008468) #19 HLA-DMA (ENSCLAG00000014679) #21 BRD2 (ENSCLAG00000009750) #22 HLA-DOA (ENSCLAG00000011531) #23 HLA-DPB1 (ENSCLAG00000013126) HLA-DPA1 (ENSCLAG00000010668) COL11A2 (ENSCLAG00000007783) #24 RXRB (ENSCLAG00000013699) #25 SLC39A7 (ENSCLAG00000014475) #26 HSD17B8 (ENSCLAG00000007885) #27 RING1 (ENSCLAG00000009149) #28 VPS52 (ENSCLAG00000008115) #30 RPS18 (ENSCLAG00000008982) ##31 WDR46 (ENSCLAG00000007512) #33 PFDN6 (ENSCLAG00000010475) #34 RGL2 (ENSCLAG00000009780) #35 TAPBP (ENSCLAG00000010992) #37 DAXX (ENSCLAG00000010016) Degu MODERN SPECIES 46 ENSODEG00000017653 ENSODEG00000017401 ENSODEG00000017414 #8 ENSODEG00000017398 ENSODEG00000017435 #10 ENSODEG00000017402 ##10 ENSODEG00000017510 #12 ENSODEG00000017249 #13 HLA-DOB (ENSODEG00000017495) #14 TAP1 (ENSODEG00000017484) #17 PSMB9 (ENSODEG00000017656) #18 TAP2 (ENSODEG00000017797) #15 PSMB8 (ENSODEG00000017662) #16 HLA-DMB (ENSODEG00000017802) #19 ENSODEG00000017381 #21 BRD2 (ENSODEG00000017239) #22 HLA-DOA (ENSODEG00000017569) #23 HLA-DPA1 (ENSODEG00000017716) COL11A2 (ENSODEG00000017513) #24 RXRB (ENSODEG00000017146) #25 SLC39A7 (ENSODEG00000017361) #26 HSD17B8 (ENSODEG00000017486) #27 RING1 (ENSODEG00000017691) #28 VPS52 (ENSODEG00000017744) #30 ENSODEG00000017344 ##31 B3GALT4 (ENSODEG00000017281) #32 WDR46 (ENSODEG00000017342) #33 ENSODEG00000017649 #34 RGL2 (ENSODEG00000017326) #35 TAPBP (ENSODEG00000017301) #37 DAXX (ENSODEG00000017044) Guinea pig MODERN SPECIES 15 ENSCPOG00000023019 #7 BTNL2 (ENSCPOG00000004277) #8 HLA-DRA (ENSCPOG00000012309) #9 ENSCPOG00000036465 #11 ENSCPOG00000003574 ##10 ENSCPOG00000040083 ##10 ENSCPOG00000014463 HLA-DQB2 (ENSCPOG00000038606) #13 HLA-DOB (ENSCPOG00000033895) #14 TAP2 (ENSCPOG00000038951) #15 PSMB8 (ENSCPOG00000000729) #16 TAP1 (ENSCPOG00000026988) #17 PSMB9 (ENSCPOG00000002121) #18 HLA-DMB (ENSCPOG00000002810) #19 HLA-DMA (ENSCPOG00000015044) #21 BRD2 (ENSCPOG00000002811) #22 HLA-DOA (ENSCPOG00000012562) #23 ENSCPOG00000002427 ENSCPOG00000032859 ENSCPOG00000024142 ENSCPOG00000035477 COL11A2 (ENSCPOG00000020466) #24 RXRB (ENSCPOG00000013936) #25 SLC39A7 (ENSCPOG00000023790) #26 HSD17B8 (ENSCPOG00000013940) #27 RING1 (ENSCPOG00000013943) #28 VPS52 (ENSCPOG00000013947) #30 RPS18 (ENSCPOG00000019675) #31 B3GALT4 (ENSCPOG00000012731) #32 WDR46 (ENSCPOG00000012733) #33 PFDN6 (ENSCPOG00000019520) #34 Naked mole-rat female MODERN SPECIES 4 GPSM3 (ENSHGLG00000012807) HLA-DRA (ENSHGLG00000012243) #9 ENSHGLG00000012074 #10 ENSHGLG00000011873 ##10 ENSHGLG00000011613 ##10 ENSHGLG00000011398 ENSHGLG00000043086 HLA-DQB2 (ENSHGLG00000038840) #13 HLA-DOB (ENSHGLG00000016652) #14 TAP2 (ENSHGLG00000019356) #15 PSMB8 (ENSHGLG00000017087) #16 TAP1 (ENSHGLG00000017081) #17 PSMB9 (ENSHGLG00000036914) #18 HLA-DMB (ENSHGLG00000017060) #19 HLA-DMA (ENSHGLG00000017048) #21 BRD2 (ENSHGLG00000019334) #22 HLA-DOA (ENSHGLG00000019255) #23 HLA-DPA1 (ENSHGLG00000019266) HLA-DPB1 (ENSHGLG00000019389) COL11A2 (ENSHGLG00000018531) #24 RXRB (ENSHGLG00000018456) #25 SLC39A7 (ENSHGLG00000018434) #26 HSD17B8 (ENSHGLG00000019497) #27 RING1 (ENSHGLG00000019474) #28 VPS52 (ENSHGLG00000017226) #30 B3GALT4 (ENSHGLG00000046221) #32 WDR46 (ENSHGLG00000017190) #33 PFDN6 (ENSHGLG00000017170) #34 RGL2 (ENSHGLG00000017158) #35 TAPBP (ENSHGLG00000017138) #37 ZBTB22 (ENSHGLG00000017146) #36 Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Eurasian red squirrel MODERN SPECIES 16 HLA-DRA (ENSSVLG00005007588) #9 ENSSVLG00005007546 #10 ENSSVLG00005007511 #11 ENSSVLG00005007482 ##10 ENSSVLG00005007455 #12 HLA-DQB2 (ENSSVLG00005007368) #13 ENSSVLG00005007173 #12 ENSSVLG00005006864 #13 HLA-DOB (ENSSVLG00005006746) #14 TAP2 (ENSSVLG00005006696) #15 PSMB8 (ENSSVLG00005006647) #16 TAP1 (ENSSVLG00005006618) #17 PSMB9 (ENSSVLG00005006563) #18 HLA-DMB (ENSSVLG00005006515) #19 HLA-DMA (ENSSVLG00005006465) #21 BRD2 (ENSSVLG00005006374) #22 HLA-DOA (ENSSVLG00005006335) #23 HLA-DPA1 (ENSSVLG00005006304) HLA-DPB1 (ENSSVLG00005006269) COL11A2 (ENSSVLG00005005202) #24 RXRB (ENSSVLG00005004952) #25 SLC39A7 (ENSSVLG00005004925) #26 HSD17B8 (ENSSVLG00005004902) #27 RING1 (ENSSVLG00005004804) #28 ENSSVLG00005004778 VPS52 (ENSSVLG00005004757) #30 RPS18 (ENSSVLG00005004721) #31 B3GALT4 (ENSSVLG00005004704) #32 WDR46 (ENSSVLG00005004694) #33 ENSSVLG00005004670 #34 RGL2 (ENSSVLG00005004647) #35 Marmotini ANCESTRAL SPECIES 18 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.k.b #10 ENSGT00940000154993.k.a ##10 ENSGT00940000161821.k #12 ENSGT00940000154723.b #13 ENSGT00940000161821.l.a #12 ENSGT00940000162353.i #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00940000162353.i #14 ENSGT00860000136204 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Arctic ground squirrel MODERN SPECIES 25 HLA-DMB (ENSUPAG00010005014) #19 HLA-DMA (ENSUPAG00010005022) #21 BRD2 (ENSUPAG00010005033) #22 HLA-DOA (ENSUPAG00010005068) #23 HLA-DPB1 (ENSUPAG00010005123) HLA-DPA1 (ENSUPAG00010012558) COL11A2 (ENSUPAG00010012591) #24 RXRB (ENSUPAG00010013376) #25 SLC39A7 (ENSUPAG00010013405) #26 HSD17B8 (ENSUPAG00010013412) #27 RING1 (ENSUPAG00010013424) #28 VPS52 (ENSUPAG00010013433) #30 ENSUPAG00010013506 ##31 B3GALT4 (ENSUPAG00010013513) #32 WDR46 (ENSUPAG00010013516) #33 PFDN6 (ENSUPAG00010013562) #34 RGL2 (ENSUPAG00010013583) #35 TAPBP (ENSUPAG00010013596) #37 Squirrel MODERN SPECIES 76 ENSSTOG00000028098 ##29 HLA-DOB (ENSSTOG00000003405) #14 ENSSTOG00000030715 TAP2 (ENSSTOG00000003413) #15 PSMB8 (ENSSTOG00000019724) #16 TAP1 (ENSSTOG00000003451) #17 PSMB9 (ENSSTOG00000003475) #18 HLA-DMB (ENSSTOG00000019821) #19 HLA-DMA (ENSSTOG00000009246) #21 BRD2 (ENSSTOG00000010807) #22 HLA-DOA (ENSSTOG00000010820) #23 HLA-DPA1 (ENSSTOG00000003558) HLA-DPB1 (ENSSTOG00000003567) COL11A2 (ENSSTOG00000003578) #24 RXRB (ENSSTOG00000027099) #25 SLC39A7 (ENSSTOG00000014304) #26 HSD17B8 (ENSSTOG00000020853) #27 RING1 (ENSSTOG00000026166) #28 VPS52 (ENSSTOG00000002397) #30 ENSSTOG00000002417 ##31 B3GALT4 (ENSSTOG00000024877) #32 WDR46 (ENSSTOG00000002433) #33 PFDN6 (ENSSTOG00000027428) #34 RGL2 (ENSSTOG00000024728) #35 TAPBP (ENSSTOG00000025004) #37 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 24 ENSMMMG00000023121 RAB8A (ENSMMMG00000023118) TPM4 (ENSMMMG00000022621) ENSMMMG00000022612 ENSMMMG00000022610 ENSMMMG00000022564 ENSMMMG00000022557 CYP4F2 (ENSMMMG00000022533) CYP4F8 (ENSMMMG00000022511) CYP4F22 (ENSMMMG00000022504) PGLYRP2 (ENSMMMG00000022496) RASAL3 (ENSMMMG00000022474) ENSMMMG00000022459 AKAP8L (ENSMMMG00000022438) AKAP8 (ENSMMMG00000022416) ENSMMMG00000022411 #22 ENSMMMG00000022407 EPHX3 (ENSMMMG00000022401) NOTCH3 (ENSMMMG00000022356) ENSMMMG00000022351 ILVBL (ENSMMMG00000022300) SYDE1 (ENSMMMG00000022294) OR1I1 (ENSMMMG00000022293) CASP14 (ENSMMMG00000022289) CCDC105 (ENSMMMG00000022286) SLC1A6 (ENSMMMG00000022279) ENSMMMG00000022278 ENSMMMG00000022277 ENSMMMG00000022259 ENSMMMG00000022258 ENSMMMG00000022253 Alpin marmot MODERN SPECIES 20 ENSMMMG00000018777 #10 ENSMMMG00000018780 ##10 ENSMMMG00000018785 #12 ENSMMMG00000018797 ENSMMMG00000018808 #13 ENSMMMG00000020395 ##29 ENSMMMG00000024056 #13 ENSMMMG00000024215 ##29 HLA-DOB (ENSMMMG00000024217) #14 TAP2 (ENSMMMG00000024218) #15 PSMB8 (ENSMMMG00000024220) #16 TAP1 (ENSMMMG00000024221) #17 PSMB9 (ENSMMMG00000024222) #18 HLA-DMB (ENSMMMG00000024223) #19 HLA-DMA (ENSMMMG00000024224) #21 BRD2 (ENSMMMG00000024225) #22 HLA-DOA (ENSMMMG00000024226) #23 HLA-DPA1 (ENSMMMG00000024227) HLA-DPB1 (ENSMMMG00000024228) COL11A2 (ENSMMMG00000024229) #24 RXRB (ENSMMMG00000024230) #25 SLC39A7 (ENSMMMG00000024231) #26 HSD17B8 (ENSMMMG00000024232) #27 RING1 (ENSMMMG00000024233) #28 VPS52 (ENSMMMG00000024234) #30 ENSMMMG00000024235 ##31 B3GALT4 (ENSMMMG00000024236) #32 WDR46 (ENSMMMG00000024237) #33 PFDN6 (ENSMMMG00000024238) #34 RGL2 (ENSMMMG00000024239) #35 TAPBP (ENSMMMG00000024240) #37 Lagomorpha ANCESTRAL SPECIES 2 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154723.b #13 ENSGT00940000154993 #10 ENSGT00940000161821 #12 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Rabbit MODERN SPECIES 3 ENSOCUG00000021762 ENSOCUG00000006769 #8 ENSOCUG00000025822 #7 HLA-DRA (ENSOCUG00000009103) #9 ENSOCUG00000029731 #10 ENSOCUG00000030453 #11 HLA-DQB1 (ENSOCUG00000002485) #13 ENSOCUG00000002480 #12 HLA-DOB (ENSOCUG00000029437) #14 TAP2 (ENSOCUG00000002489) #15 PSMB8 (ENSOCUG00000002131) #16 TAP1 (ENSOCUG00000002135) #17 ENSOCUG00000002139 #18 HLA-DMB (ENSOCUG00000026567) #19 HLA-DMA (ENSOCUG00000022573) #21 BRD2 (ENSOCUG00000003097) #22 ENSOCUG00000003319 #23 HLA-DPB1 (ENSOCUG00000008721) COL11A2 (ENSOCUG00000016497) #24 RXRB (ENSOCUG00000011590) #25 SLC39A7 (ENSOCUG00000011598) #26 HSD17B8 (ENSOCUG00000020995) #27 VPS52 (ENSOCUG00000010533) #30 ENSOCUG00000010546 ##31 B3GALT4 (ENSOCUG00000010550) #32 ENSOCUG00000010554 #33 PFDN6 (ENSOCUG00000010559) #34 RGL2 (ENSOCUG00000026930) #35 TAPBP (ENSOCUG00000010563) #37 DAXX (ENSOCUG00000010574) SMIM40 (ENSOCUG00000037016) Pika MODERN SPECIES 3165 ENSOPRG00000007415 #19 HLA-DMA (ENSOPRG00000007424) #21 BRD2 (ENSOPRG00000007431) #22 HLA-DOA (ENSOPRG00000007456) #23 ENSOPRG00000007464 Tree shrew MODERN SPECIES 5170 HLA-DMB (ENSTBEG00000016414) #19 BRD2 (ENSTBEG00000016659) #22 Primates ANCESTRAL SPECIES 5 ENSGT00530000064839 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000163287 ENSGT00530000064839 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Tarsier DUPLICATION Tarsier MODERN SPECIES 1195 BRD2 (ENSTSYG00000004390) #22 HLA-DOA (ENSTSYG00000005170) #23 HLA-DPA1 (ENSTSYG00000013384) HLA-DPB1 (ENSTSYG00000009782) COL11A2 (ENSTSYG00000027190) #24 RXRB (ENSTSYG00000033111) #25 SLC39A7 (ENSTSYG00000026087) #26 HSD17B8 (ENSTSYG00000029416) #27 RING1 (ENSTSYG00000036469) #28 VPS52 (ENSTSYG00000012493) #30 RPS18 (ENSTSYG00000012508) #31 WDR46 (ENSTSYG00000028390) #33 ENSTSYG00000037267 #34 ENSTSYG00000006290 TAPBP (ENSTSYG00000036113) #37 DAXX (ENSTSYG00000029920) Tarsier MODERN SPECIES 1411 CRHR2 (ENSTSYG00000001674) GARS (ENSTSYG00000008538) ENSTSYG00000025595 #22 GGCT (ENSTSYG00000001156) NOD1 (ENSTSYG00000001155) Simiiformes ANCESTRAL SPECIES 5 ENSGT00530000064839 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES 2 ENSGT00940000154723.b.k #13 ENSGT00940000154993.n #10 ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #13 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.b #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Cebidae ANCESTRAL SPECIES 5 ENSGT00940000154993.n.a #10 ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #13 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.b #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Cebidae_a ANCESTRAL SPECIES 25 ENSGT00940000154993.n.a.b #10 ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #13 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.b #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Capuchin MODERN SPECIES 24 HLA-DRA (ENSCCAG00000027271) #9 ENSCCAG00000033580 #10 ENSCCAG00000024284 #10 HLA-DRB1 (ENSCCAG00000025004) #10 HLA-DQA2 (ENSCCAG00000023549) ENSCCAG00000025088 #13 ENSCCAG00000023824 ENSCCAG00000028168 #13 HLA-DOB (ENSCCAG00000034021) #14 TAP2 (ENSCCAG00000035497) #15 PSMB8 (ENSCCAG00000026335) #16 TAP1 (ENSCCAG00000024218) #17 PSMB9 (ENSCCAG00000036808) #18 HLA-DMB (ENSCCAG00000030904) #19 HLA-DMA (ENSCCAG00000031122) #21 ENSCCAG00000016930 #22 HLA-DOA (ENSCCAG00000024211) #23 HLA-DPA1 (ENSCCAG00000035048) HLA-DPB1 (ENSCCAG00000036491) COL11A2 (ENSCCAG00000021086) #24 RXRB (ENSCCAG00000015878) #25 SLC39A7 (ENSCCAG00000021481) #26 HSD17B8 (ENSCCAG00000034063) #27 RING1 (ENSCCAG00000020672) #28 VPS52 (ENSCCAG00000029806) #30 RPS18 (ENSCCAG00000023639) #31 WDR46 (ENSCCAG00000029352) #33 PFDN6 (ENSCCAG00000027108) #34 RGL2 (ENSCCAG00000036457) #35 TAPBP (ENSCCAG00000030579) #37 ZBTB22 (ENSCCAG00000019414) #36 Bolivian squirrel monkey MODERN SPECIES 49 DEFB110 (ENSSBOG00000019583) DEFB112 (ENSSBOG00000031354) TFAP2D (ENSSBOG00000033191) TFAP2B (ENSSBOG00000021734) ENSSBOG00000033280 PKHD1 (ENSSBOG00000026830) IL17A (ENSSBOG00000031117) IL17F (ENSSBOG00000022387) MCM3 (ENSSBOG00000019946) PAQR8 (ENSSBOG00000008561) EFHC1 (ENSSBOG00000023512) TRAM2 (ENSSBOG00000033153) HLA-DMB (ENSSBOG00000028499) #19 HLA-DMA (ENSSBOG00000020585) #21 ENSSBOG00000034712 ENSSBOG00000033070 #22 HLA-DOA (ENSSBOG00000022957) #23 HLA-DPA1 (ENSSBOG00000026139) HLA-DPB1 (ENSSBOG00000023374) COL11A2 (ENSSBOG00000030814) #24 RXRB (ENSSBOG00000028234) #25 SLC39A7 (ENSSBOG00000027575) #26 HSD17B8 (ENSSBOG00000033905) #27 ENSSBOG00000021715 #28 VPS52 (ENSSBOG00000034931) #30 ENSSBOG00000034369 ##31 WDR46 (ENSSBOG00000032568) #33 PFDN6 (ENSSBOG00000034801) #34 RGL2 (ENSSBOG00000031644) #35 TAPBP (ENSSBOG00000031122) #37 ZBTB22 (ENSSBOG00000018285) #36 Marmoset MODERN SPECIES 16 ENSCJAG00000072632 ENSCJAG00000042232 ENSCJAG00000044447 ENSCJAG00000046350 ENSCJAG00000082318 ENSCJAG00000073641 ENSCJAG00000043141 ENSCJAG00000072040 ENSCJAG00000021548 #13 ENSCJAG00000045515 HLA-DOB (ENSCJAG00000035217) #14 TAP2 (ENSCJAG00000021550) #15 TAP1 (ENSCJAG00000021552) #17 PSMB9 (ENSCJAG00000021553) #18 HLA-DMA (ENSCJAG00000021558) #21 ENSCJAG00000021566 #22 HLA-DOA (ENSCJAG00000021571) #23 HLA-DPA1 (ENSCJAG00000057301) HLA-DPB1 (ENSCJAG00000021575) COL11A2 (ENSCJAG00000021577) #24 RXRB (ENSCJAG00000021619) #25 SLC39A7 (ENSCJAG00000021622) #26 ENSCJAG00000021632 #27 RING1 (ENSCJAG00000081691) #28 VPS52 (ENSCJAG00000021644) #30 ENSCJAG00000021650 #31 B3GALT4 (ENSCJAG00000043225) #32 WDR46 (ENSCJAG00000021659) #33 PFDN6 (ENSCJAG00000021665) #34 RGL2 (ENSCJAG00000021668) #35 TAPBP (ENSCJAG00000021675) #37 Mas night monkey MODERN SPECIES 1006 ENSANAG00000025439 ENSANAG00000023444 #13 HLA-DQA2 (ENSANAG00000023973) HLA-DQB2 (ENSANAG00000025105) #13 TAP2 (ENSANAG00000023266) #15 PSMB8 (ENSANAG00000023214) #16 TAP1 (ENSANAG00000025374) #17 PSMB9 (ENSANAG00000018195) #18 ENSANAG00000029686 HLA-DMB (ENSANAG00000031322) #19 HLA-DMA (ENSANAG00000024515) #21 ENSANAG00000022510 BRD2 (ENSANAG00000025054) #22 HLA-DOA (ENSANAG00000023738) #23 ENSANAG00000020251 ENSANAG00000021916 HLA-DPA1 (ENSANAG00000025586) Platyrrhini ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.mc #22 Cebidae ANCESTRAL SPECIES 1 ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338 ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e ENSGT00940000156746 ENSGT00940000155661 Cebidae_a ANCESTRAL SPECIES ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338.i ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e.a ENSGT00940000156746 ENSGT00940000155661 Capuchin MODERN SPECIES 163 TTC22 (ENSCCAG00000033419) LEXM (ENSCCAG00000027952) ENSCCAG00000028192 TMEM61 (ENSCCAG00000024822) BSND (ENSCCAG00000021350) ENSCCAG00000030255 PCSK9 (ENSCCAG00000036131) USP24 (ENSCCAG00000027655) ENSCCAG00000022168 PLPP3 (ENSCCAG00000001330) PRKAA2 (ENSCCAG00000035336) FYB2 (ENSCCAG00000027589) C8A (ENSCCAG00000024662) C8B (ENSCCAG00000031384) DAB1 (ENSCCAG00000024787) ENSCCAG00000022246 #22 OMA1 (ENSCCAG00000022811) TACSTD2 (ENSCCAG00000032228) MYSM1 (ENSCCAG00000029058) FGGY (ENSCCAG00000033989) ENSCCAG00000025106 HOOK1 (ENSCCAG00000006471) CYP2J2 (ENSCCAG00000027549) C1orf87 (ENSCCAG00000027605) Bolivian squirrel monkey MODERN SPECIES 45 TTC4 (ENSSBOG00000032224) TTC22 (ENSSBOG00000026280) LEXM (ENSSBOG00000006931) DHCR24 (ENSSBOG00000025550) TMEM61 (ENSSBOG00000013875) BSND (ENSSBOG00000035713) PCSK9 (ENSSBOG00000029957) USP24 (ENSSBOG00000022906) ENSSBOG00000031773 PLPP3 (ENSSBOG00000021254) PRKAA2 (ENSSBOG00000036202) FYB2 (ENSSBOG00000024468) C8A (ENSSBOG00000023783) C8B (ENSSBOG00000034357) DAB1 (ENSSBOG00000030885) ENSSBOG00000024749 #22 OMA1 (ENSSBOG00000023199) TACSTD2 (ENSSBOG00000024148) MYSM1 (ENSSBOG00000031552) ENSSBOG00000029734 FGGY (ENSSBOG00000031213) HOOK1 (ENSSBOG00000032069) CYP2J2 (ENSSBOG00000033096) C1orf87 (ENSSBOG00000033425) ENSSBOG00000024205 NFIA (ENSSBOG00000030190) ENSSBOG00000028260 ENSSBOG00000028010 PATJ (ENSSBOG00000022857) KANK4 (ENSSBOG00000020644) USP1 (ENSSBOG00000020735) Marmoset MODERN SPECIES 19 TTC4 (ENSCJAG00000015611) TTC22 (ENSCJAG00000015639) LEXM (ENSCJAG00000015646) DHCR24 (ENSCJAG00000015653) TMEM61 (ENSCJAG00000015669) BSND (ENSCJAG00000042101) PCSK9 (ENSCJAG00000015682) USP24 (ENSCJAG00000015739) PLPP3 (ENSCJAG00000015880) ENSCJAG00000054878 PRKAA2 (ENSCJAG00000015889) FYB2 (ENSCJAG00000015907) C8A (ENSCJAG00000015926) C8B (ENSCJAG00000015932) DAB1 (ENSCJAG00000015941) ENSCJAG00000022997 #22 ENSCJAG00000070548 ENSCJAG00000084546 OMA1 (ENSCJAG00000016000) ENSCJAG00000074487 TACSTD2 (ENSCJAG00000016017) MYSM1 (ENSCJAG00000016020) FGGY (ENSCJAG00000016043) ENSCJAG00000022957 HOOK1 (ENSCJAG00000016077) CYP2J2 (ENSCJAG00000016130) C1orf87 (ENSCJAG00000016137) ENSCJAG00000053189 ENSCJAG00000022998 NFIA (ENSCJAG00000016165) ENSCJAG00000078946 Catarrhini ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b #10 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #13 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b #10 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #13 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.a #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Hominidae ANCESTRAL SPECIES 5 ENSGT00940000160997 #9 ENSGT00940000154993.m.a.a #10 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #13 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.a #31 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000154993.m.a.b #10 ENSGT00940000154993.m.a.a #10 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #13 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.a #31 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Gorilla MODERN SPECIES 19 BTNL2 (ENSGGOG00000009855) #8 HLA-DRA (ENSGGOG00000009861) #9 HLA-DRB5 (ENSGGOG00000037929) #10 ENSGGOG00000000700 #10 HLA-DQA1 (ENSGGOG00000013538) HLA-DQB1 (ENSGGOG00000004252) #13 ENSGGOG00000037744 HLA-DQB2 (ENSGGOG00000014413) #13 HLA-DOB (ENSGGOG00000043194) #14 TAP2 (ENSGGOG00000010941) #15 PSMB8 (ENSGGOG00000010953) #16 TAP1 (ENSGGOG00000010958) #17 PSMB9 (ENSGGOG00000010965) #18 HLA-DMB (ENSGGOG00000022404) #19 ENSGGOG00000005835 #21 BRD2 (ENSGGOG00000043461) #22 ENSGGOG00000005838 HLA-DOA (ENSGGOG00000010653) #23 HLA-DPA1 (ENSGGOG00000013625) HLA-DPB1 (ENSGGOG00000013630) COL11A2 (ENSGGOG00000009799) #24 RXRB (ENSGGOG00000009823) #25 SLC39A7 (ENSGGOG00000009830) #26 HSD17B8 (ENSGGOG00000009838) #27 RING1 (ENSGGOG00000009842) #28 VPS52 (ENSGGOG00000006565) #30 RPS18 (ENSGGOG00000006571) #31 WDR46 (ENSGGOG00000006578) #33 PFDN6 (ENSGGOG00000006583) #34 RGL2 (ENSGGOG00000006585) #35 TAPBP (ENSGGOG00000006593) #37 Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000154993.m.a.b #10 ENSGT00940000154993.m.a.a #10 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #13 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.a #31 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Pan ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b #10 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #13 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.a #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Chimpanzee MODERN SPECIES 19 PATR-DRA (ENSPTRG00000018016) #9 PATR-DRB5 (ENSPTRG00000023735) #10 ENSPTRG00000051243 #10 PATR-DQB1 (ENSPTRG00000018001) #10 HLA-DQA1 (ENSPTRG00000018017) HLA-DQB1 (ENSPTRG00000018018) #13 HLA-DQA2 (ENSPTRG00000034186) HLA-DQB2 (ENSPTRG00000023404) #13 PATR-DOB (ENSPTRG00000018020) #14 TAP2 (ENSPTRG00000018021) #15 PSMB8 (ENSPTRG00000018022) #16 TAP1 (ENSPTRG00000018023) #17 PSMB9 (ENSPTRG00000018024) #18 PATR-DMB (ENSPTRG00000018025) #19 ENSPTRG00000018026 #21 BRD2 (ENSPTRG00000042676) #22 ENSPTRG00000018027 HLA-DOA (ENSPTRG00000018028) #23 HLA-DPA1 (ENSPTRG00000018029) HLA-DPB1 (ENSPTRG00000018030) COL11A2 (ENSPTRG00000018033) #24 RXRB (ENSPTRG00000018034) #25 SLC39A7 (ENSPTRG00000018035) #26 HSD17B8 (ENSPTRG00000018036) #27 RING1 (ENSPTRG00000018037) #28 VPS52 (ENSPTRG00000018038) #30 RPS18 (ENSPTRG00000018039) #31 WDR46 (ENSPTRG00000018040) #33 PFDN6 (ENSPTRG00000018041) #34 RGL2 (ENSPTRG00000018042) #35 TAPBP (ENSPTRG00000018043) #37 Bonobo MODERN SPECIES 19 ENSPPAG00000036652 #10 ENSPPAG00000039594 #10 ENSPPAG00000019881 HLA-DQB1 (ENSPPAG00000041275) #13 HLA-DQA2 (ENSPPAG00000038014) HLA-DQB2 (ENSPPAG00000041341) #13 HLA-DOB (ENSPPAG00000027428) #14 TAP2 (ENSPPAG00000033938) #15 PSMB8 (ENSPPAG00000042377) #16 TAP1 (ENSPPAG00000029436) #17 PSMB9 (ENSPPAG00000038623) #18 ENSPPAG00000033020 HLA-DMB (ENSPPAG00000037856) #19 HLA-DMA (ENSPPAG00000041639) #21 ENSPPAG00000027710 BRD2 (ENSPPAG00000016843) #22 HLA-DOA (ENSPPAG00000036361) #23 HLA-DPA1 (ENSPPAG00000031863) HLA-DPB1 (ENSPPAG00000041449) COL11A2 (ENSPPAG00000013099) #24 RXRB (ENSPPAG00000038590) #25 SLC39A7 (ENSPPAG00000028225) #26 HSD17B8 (ENSPPAG00000032286) #27 RING1 (ENSPPAG00000001290) #28 VPS52 (ENSPPAG00000039628) #30 RPS18 (ENSPPAG00000037432) #31 B3GALT4 (ENSPPAG00000040442) #32 WDR46 (ENSPPAG00000029606) #33 PFDN6 (ENSPPAG00000026096) #34 RGL2 (ENSPPAG00000030717) #35 TAPBP (ENSPPAG00000024524) #37 Human MODERN SPECIES 18 HLA-DRB5 (ENSG00000198502) #10 HLA-DRB1 (ENSG00000196126) #10 HLA-DQA1 (ENSG00000196735) HLA-DQB1 (ENSG00000179344) #13 HLA-DQA2 (ENSG00000237541) HLA-DQB2 (ENSG00000232629) #13 HLA-DOB (ENSG00000241106) #14 ENSG00000250264 TAP2 (ENSG00000204267) #15 PSMB8 (ENSG00000204264) #16 PSMB9 (ENSG00000240065) #18 TAP1 (ENSG00000168394) #17 HLA-DMB (ENSG00000242574) #19 ENSG00000248993 HLA-DMA (ENSG00000204257) #21 BRD2 (ENSG00000204256) #22 HLA-DOA (ENSG00000204252) #23 HLA-DPA1 (ENSG00000231389) HLA-DPB1 (ENSG00000223865) COL11A2 (ENSG00000204248) #24 RXRB (ENSG00000204231) #25 SLC39A7 (ENSG00000112473) #26 HSD17B8 (ENSG00000204228) #27 RING1 (ENSG00000204227) #28 VPS52 (ENSG00000223501) #30 RPS18 (ENSG00000231500) #31 B3GALT4 (ENSG00000235863) #32 WDR46 (ENSG00000227057) #33 PFDN6 (ENSG00000204220) #34 RGL2 (ENSG00000237441) #35 TAPBP (ENSG00000231925) #37 Orangutan MODERN SPECIES 19 TSBP1 (ENSPPYG00000016489) BTNL2 (ENSPPYG00000017215) #8 HLA-DRA (ENSPPYG00000017234) #9 HLA-DRB1 (ENSPPYG00000016490) #10 ENSPPYG00000017216 #10 HLA-DQA2 (ENSPPYG00000017219) HLA-DQB2 (ENSPPYG00000017220) #13 HLA-DOB (ENSPPYG00000017221) #14 TAP2 (ENSPPYG00000017222) #15 PSMB8 (ENSPPYG00000017223) #16 TAP1 (ENSPPYG00000017224) #17 PSMB9 (ENSPPYG00000017225) #18 HLA-DMB (ENSPPYG00000017226) #19 ENSPPYG00000017227 #21 ENSPPYG00000031820 BRD2 (ENSPPYG00000017228) #22 HLA-DOA (ENSPPYG00000016495) #23 ENSPPYG00000029571 HLA-DPA1 (ENSPPYG00000017229) COL11A2 (ENSPPYG00000017238) #24 RXRB (ENSPPYG00000017239) #25 SLC39A7 (ENSPPYG00000017240) #26 HSD17B8 (ENSPPYG00000017241) #27 RING1 (ENSPPYG00000017242) #28 VPS52 (ENSPPYG00000017243) #30 ENSPPYG00000025953 ##31 B3GALT4 (ENSPPYG00000017244) #32 WDR46 (ENSPPYG00000017245) #33 PFDN6 (ENSPPYG00000038269) #34 RGL2 (ENSPPYG00000017247) #35 TAPBP (ENSPPYG00000017248) #37 Gibbon MODERN SPECIES 10 HLA-DRA (ENSNLEG00000006686) #9 ENSNLEG00000032832 #10 HLA-DQA1 (ENSNLEG00000032515) HLA-DQB1 (ENSNLEG00000006693) #13 HLA-DQA2 (ENSNLEG00000027015) HLA-DQB2 (ENSNLEG00000006713) #13 HLA-DOB (ENSNLEG00000027543) #14 TAP2 (ENSNLEG00000006714) #15 PSMB8 (ENSNLEG00000006733) #16 TAP1 (ENSNLEG00000006738) #17 PSMB9 (ENSNLEG00000006757) #18 ENSNLEG00000032895 HLA-DMB (ENSNLEG00000006770) #19 HLA-DMA (ENSNLEG00000006775) #21 ENSNLEG00000032110 BRD2 (ENSNLEG00000006782) #22 ENSNLEG00000031675 #23 HLA-DPA1 (ENSNLEG00000034417) HLA-DPB1 (ENSNLEG00000006801) ENSNLEG00000030023 #24 RXRB (ENSNLEG00000006809) #25 SLC39A7 (ENSNLEG00000006815) #26 HSD17B8 (ENSNLEG00000006824) #27 RING1 (ENSNLEG00000006830) #28 VPS52 (ENSNLEG00000006832) #30 RPS18 (ENSNLEG00000006840) #31 B3GALT4 (ENSNLEG00000006841) #32 ENSNLEG00000006842 #33 PFDN6 (ENSNLEG00000034338) #34 RGL2 (ENSNLEG00000006847) #35 ENSNLEG00000006852 #37 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b #10 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #13 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 177 ENSGT00940000154993.m.a.a #10 ENSGT00940000154993.m.b #10 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #13 ENSGT00940000154723.b.n #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.nc #22 ENSGT00940000162112 #23 Golden snub-nosed monkey MODERN SPECIES 1416 TAP2 (ENSRROG00000033497) #15 PSMB8 (ENSRROG00000019326) #16 TAP1 (ENSRROG00000021353) #17 PSMB9 (ENSRROG00000005028) #18 ENSRROG00000012955 HLA-DMB (ENSRROG00000039771) #19 HLA-DMA (ENSRROG00000037828) #21 ENSRROG00000034857 ENSRROG00000012557 #22 HLA-DOA (ENSRROG00000000054) #23 Black snub-nosed monkey MODERN SPECIES 1396 HLA-DQA1 (ENSRBIG00000031838) ENSRBIG00000031872 #13 HLA-DOB (ENSRBIG00000039119) #14 TAP2 (ENSRBIG00000042752) #15 PSMB8 (ENSRBIG00000032621) #16 TAP1 (ENSRBIG00000038729) #17 PSMB9 (ENSRBIG00000042419) #18 ENSRBIG00000031206 HLA-DMB (ENSRBIG00000031730) #19 HLA-DMA (ENSRBIG00000027897) #21 ENSRBIG00000033102 ENSRBIG00000044329 #22 HLA-DOA (ENSRBIG00000041291) #23 Rhinopithecus ANCESTRAL SPECIES 229 ENSGT01010000222336.a.a.a.ob.a.a.o ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b ENSGT00390000000083.a ENSGT00390000013207 ENSGT00940000153385.b.a.b.oc #22 ENSGT00940000156005 ENSGT00940000156891 ENSGT00940000158751 ENSGT00730000111019 ENSGT00390000016097 ENSGT00390000009546.a ENSGT00910000147388 ENSGT00860000135749 ENSGT00940000159153 ENSGT00940000157159 ENSGT00940000155944 ENSGT00940000153222.a.b.b.b.b.k.b ENSGT00940000157417 ENSGT00940000158243 ENSGT00940000161472 Black snub-nosed monkey MODERN SPECIES 713 ENSRBIG00000023969 ENSRBIG00000031681 RIOX1 (ENSRBIG00000017859) HEATR4 (ENSRBIG00000041847) ENSRBIG00000015372 #22 NUMB (ENSRBIG00000043156) PAPLN (ENSRBIG00000033248) PSEN1 (ENSRBIG00000019293) RBM25 (ENSRBIG00000039904) ZFYVE1 (ENSRBIG00000036107) DCAF4 (ENSRBIG00000041818) ENSRBIG00000040543 ENSRBIG00000038609 DPF3 (ENSRBIG00000021314) RGS6 (ENSRBIG00000038422) SIPA1L1 (ENSRBIG00000013622) ENSRBIG00000033864 PCNX1 (ENSRBIG00000027567) MAP3K9 (ENSRBIG00000031048) TTC9 (ENSRBIG00000041695) Golden snub-nosed monkey MODERN SPECIES 797 ENSRROG00000036776 ENSRROG00000039724 RIOX1 (ENSRROG00000010218) HEATR4 (ENSRROG00000040469) ENSRROG00000035725 #22 NUMB (ENSRROG00000039499) PAPLN (ENSRROG00000032324) PSEN1 (ENSRROG00000023023) RBM25 (ENSRROG00000035556) ENSRROG00000028901 ZFYVE1 (ENSRROG00000037742) DCAF4 (ENSRROG00000035960) ENSRROG00000044529 ENSRROG00000045287 DPF3 (ENSRROG00000039384) RGS6 (ENSRROG00000040751) Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Macaca ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Macaca_a ANCESTRAL SPECIES 1 ENSGT00940000157246 ENSGT01030000234542.b.b.a.a.a.b.u ENSGT01060000248581.A.b.l ENSGT00940000164421.c ENSGT01100000263561.C.d.a.a ENSGT01100000263561.C.d.a.b.a ENSGT00940000164421.d ENSGT01060000248581.A.b.k ENSGT00940000154646.C.n.a ENSGT00940000161507 ENSGT00940000158718 ENSGT00940000161423 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000153385.b.a.b.pc #22 ENSGT00940000162790.a ENSGT00940000162086 ENSGT00940000160234 ENSGT00940000158035 ENSGT01030000234635.a.a.a.b ENSGT00940000162852.a ENSGT00940000162117 ENSGT00390000003207.a ENSGT00940000159972 ENSGT00940000162084 ENSGT00940000153523.j ENSGT00950000183216.d ENSGT00940000153523.i.b ENSGT00940000162597 ENSGT00940000163161 Crab-eating macaque MODERN SPECIES 10 RAB8A (ENSMFAG00000035674) ENSMFAG00000042469 ENSMFAG00000018623 CYP4F11 (ENSMFAG00000039188) OR10H5 (ENSMFAG00000054868) ENSMFAG00000054713 CYP4F57 (ENSMFAG00000045394) ENSMFAG00000052137 ENSMFAG00000053879 CYP4F22 (ENSMFAG00000043198) PGLYRP2 (ENSMFAG00000024296) WIZ (ENSMFAG00000039361) ENSMFAG00000051652 AKAP8L (ENSMFAG00000045237) AKAP8 (ENSMFAG00000042432) ENSMFAG00000030806 #22 EPHX3 (ENSMFAG00000001020) ILVBL (ENSMFAG00000030909) SYDE1 (ENSMFAG00000037133) OR1I1 (ENSMFAG00000049100) CASP14 (ENSMFAG00000045231) CCDC105 (ENSMFAG00000039156) SLC1A6 (ENSMFAG00000003076) OR7C2 (ENSMFAG00000034243) ENSMFAG00000057232 ENSMFAG00000047405 ENSMFAG00000058125 ZNF333 (ENSMFAG00000035483) ADGRE2 (ENSMFAG00000038126) CLEC17A (ENSMFAG00000043558) NDUFB7 (ENSMFAG00000043529) Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_d DUPLICATION Cercopithecinae_d ANCESTRAL SPECIES 68 ENSGT00390000004799 ENSGT00390000018900 ENSGT00940000153165.a.b.a ENSGT00940000164696 ENSGT00940000164691.a.b ENSGT00940000164793 ENSGT00940000154251.A.b.a.b.a ENSGT00950000183206.b.c.a.b.a.a ENSGT00940000161967 ENSGT00940000162415 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000158134.A ENSGT00940000162666 ENSGT00940000162246 ENSGT01090000259995.b.b.b ENSGT00940000153385.b.a.b.qc.a.a #22 ENSGT01090000259995.b.b.a.b.o ENSGT01090000259995.b.b.a.a.b.o.a.b ENSGT01090000259995.b.b.a.a.b.p.a Drill MODERN SPECIES 279 TRIM58 (ENSMLEG00000030196) OR2AJ1 (ENSMLEG00000005755) ENSMLEG00000031562 #22 ENSMLEG00000011380 ENSMLEG00000037918 ENSMLEG00000027254 Sooty mangabey MODERN SPECIES 301 ENSCATG00000030246 ZNF124 (ENSCATG00000035310) ENSCATG00000038074 ENSCATG00000005868 ZNF496 (ENSCATG00000031929) NLRP3 (ENSCATG00000029371) OR2B11 (ENSCATG00000043410) GCSAML (ENSCATG00000030752) OR13G1 (ENSCATG00000043354) TRIM58 (ENSCATG00000038759) ENSCATG00000030481 ENSCATG00000039502 #22 ENSCATG00000034652 ENSCATG00000017262 ENSCATG00000015507 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a.b #22 Sooty mangabey MODERN SPECIES 333 SMTNL1 (ENSCATG00000009203) TIMM10 (ENSCATG00000030369) SLC43A1 (ENSCATG00000036597) RTN4RL2 (ENSCATG00000029746) SLC43A3 (ENSCATG00000031268) PRG2 (ENSCATG00000039658) PRG3 (ENSCATG00000011827) P2RX3 (ENSCATG00000028693) SSRP1 (ENSCATG00000041377) TNKS1BP1 (ENSCATG00000037546) APLNR (ENSCATG00000019437) LRRC55 (ENSCATG00000010960) ENSCATG00000013388 OR9G4 (ENSCATG00000019474) ENSCATG00000019867 ENSCATG00000031014 #22 OR5M9 (ENSCATG00000020470) OR8J1 (ENSCATG00000014575) OR8K1 (ENSCATG00000018484) ENSCATG00000029525 ENSCATG00000018722 OR5I1 (ENSCATG00000016816) OR4S2 (ENSCATG00000018258) ENSCATG00000039191 OR4A8 (ENSCATG00000000891) Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #13 ENSGT00940000154993.m.a.a.a #10 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Vervet Monkey MODERN SPECIES 8 AGER (ENSCSAG00000009312) PBX2 (ENSCSAG00000009322) GPSM3 (ENSCSAG00000009326) NOTCH4 (ENSCSAG00000009351) HLA-DRA (ENSCSAG00000009368) #9 ENSCSAG00000009375 HLA-DRB1 (ENSCSAG00000009383) #10 HLA-DQA1 (ENSCSAG00000009389) HLA-DQB1 (ENSCSAG00000009394) #13 HLA-DOB (ENSCSAG00000009402) #14 PSMB8 (ENSCSAG00000009409) #16 TAP1 (ENSCSAG00000009417) #17 PSMB9 (ENSCSAG00000009427) #18 HLA-DMB (ENSCSAG00000009430) #19 HLA-DMA (ENSCSAG00000009436) #21 BRD2 (ENSCSAG00000009445) #22 HLA-DOA (ENSCSAG00000009452) #23 ENSCSAG00000009455 ENSCSAG00000009461 COL11A2 (ENSCSAG00000009488) #24 RXRB (ENSCSAG00000009510) #25 SLC39A7 (ENSCSAG00000009519) #26 HSD17B8 (ENSCSAG00000009530) #27 RING1 (ENSCSAG00000009538) #28 VPS52 (ENSCSAG00000009546) #30 B3GALT4 (ENSCSAG00000019308) #32 WDR46 (ENSCSAG00000009552) #33 PFDN6 (ENSCSAG00000009556) #34 RGL2 (ENSCSAG00000009562) #35 TAPBP (ENSCSAG00000009568) #37 ZBTB22 (ENSCSAG00000019307) #36 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b #10 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #13 ENSGT00940000154993.m.a.a.a #10 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00910000147736 Macaca ANCESTRAL SPECIES 9 ENSGT00530000064839 ENSGT00940000160997 #9 ENSGT00940000154993.m.a.a.b.b #10 ENSGT00940000154993.m.b.a.b #10 ENSGT00940000154993.m.a.a.a #10 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00910000147736 Pig-tailed macaque MODERN SPECIES 528 ENSMNEG00000020869 #10 ENSMNEG00000018617 ENSMNEG00000044119 #10 HLA-DQA1 (ENSMNEG00000038603) HLA-DQB1 (ENSMNEG00000027969) #13 HLA-DOB (ENSMNEG00000043598) #14 TAP2 (ENSMNEG00000041413) #15 PSMB8 (ENSMNEG00000044942) #16 TAP1 (ENSMNEG00000041518) #17 PSMB9 (ENSMNEG00000038721) #18 ENSMNEG00000036723 ENSMNEG00000035658 HLA-DMB (ENSMNEG00000044507) #19 HLA-DMA (ENSMNEG00000032904) #21 ENSMNEG00000039758 BRD2 (ENSMNEG00000030743) #22 HLA-DOA (ENSMNEG00000008508) #23 HLA-DPA1 (ENSMNEG00000040889) HLA-DPB1 (ENSMNEG00000029725) ENSMNEG00000010287 COL11A2 (ENSMNEG00000022236) #24 RXRB (ENSMNEG00000034252) #25 SLC39A7 (ENSMNEG00000034647) #26 HSD17B8 (ENSMNEG00000036244) #27 RING1 (ENSMNEG00000042339) #28 VPS52 (ENSMNEG00000038741) #30 ENSMNEG00000045500 #31 WDR46 (ENSMNEG00000034609) #33 PFDN6 (ENSMNEG00000030272) #34 RGL2 (ENSMNEG00000039053) #35 ENSMNEG00000013214 Macaca_a ANCESTRAL SPECIES 9 ENSGT00890000139566 ENSGT00940000160293 ENSGT00390000002471 ENSGT00940000163287 ENSGT00950000183123.h.b ENSGT00530000064839 ENSGT00940000160997 #9 ENSGT00940000154993.m.a.b #10 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160668 #27 ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.m.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Crab-eating macaque MODERN SPECIES 14 ENSMFAG00000033054 ENSMFAG00000049929 ENSMFAG00000033140 HLA-DRA (ENSMFAG00000032157) #9 ENSMFAG00000058962 #10 HLA-DRB5 (ENSMFAG00000000676) #10 ENSMFAG00000054107 HLA-DQA1 (ENSMFAG00000002949) HLA-DOB (ENSMFAG00000003652) #14 TAP2 (ENSMFAG00000037139) #15 TAP1 (ENSMFAG00000041369) #17 PSMB9 (ENSMFAG00000038128) #18 HLA-DMB (ENSMFAG00000004018) #19 HLA-DMA (ENSMFAG00000042109) #21 ENSMFAG00000060572 BRD2 (ENSMFAG00000037520) #22 HLA-DOA (ENSMFAG00000058905) #23 RXRB (ENSMFAG00000003583) #25 HSD17B8 (ENSMFAG00000037332) #27 SLC39A7 (ENSMFAG00000038848) #26 RING1 (ENSMFAG00000002610) #28 COL11A2 (ENSMFAG00000017491) #24 RPS18 (ENSMFAG00000032199) #31 B3GALT4 (ENSMFAG00000041942) #32 WDR46 (ENSMFAG00000000475) #33 PFDN6 (ENSMFAG00000041216) #34 RGL2 (ENSMFAG00000039597) #35 TAPBP (ENSMFAG00000000942) #37 ZBTB22 (ENSMFAG00000011344) #36 DAXX (ENSMFAG00000038728) ENSMFAG00000058856 Rhesus MODERN SPECIES 14 RNF5 (ENSMMUG00000018438) AGER (ENSMMUG00000018442) PBX2 (ENSMMUG00000018456) GPSM3 (ENSMMUG00000018459) NOTCH4 (ENSMMUG00000018461) ENSMMUG00000029402 TSBP1 (ENSMMUG00000018425) MAMU-DRA (ENSMMUG00000039082) #9 MAMU-DRB1 (ENSMMUG00000029799) #10 ENSMMUG00000054826 MAMU-DOB (ENSMMUG00000011293) #15 PSMB8 (ENSMMUG00000011301) #17 PSMB9 (ENSMMUG00000011304) #18 ENSMMUG00000063291 MAMU-DMB (ENSMMUG00000022626) #19 BRD2 (ENSMMUG00000023138) #22 MAMU-DOA (ENSMMUG00000015734) #23 ENSMMUG00000041095 ENSMMUG00000019371 COL11A2 (ENSMMUG00000003850) #24 RXRB (ENSMMUG00000003858) #25 HSD17B8 (ENSMMUG00000003861) #27 SLC39A7 (ENSMMUG00000003859) #26 RING1 (ENSMMUG00000003863) #28 ENSMMUG00000003867 #31 VPS52 (ENSMMUG00000003864) #30 B3GALT4 (ENSMMUG00000064507) #32 WDR46 (ENSMMUG00000003869) #33 PFDN6 (ENSMMUG00000003871) #34 RGL2 (ENSMMUG00000003872) #35 TAPBP (ENSMMUG00000003875) #37 Cercopithecinae_b ANCESTRAL SPECIES 18 ENSGT00530000064866 ENSGT00940000153251.b.a ENSGT00390000015391 ENSGT00940000155046.t ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #13 ENSGT00940000162353.h #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n ENSGT00940000162498.m ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.n #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Cercopithecinae_d ANCESTRAL SPECIES 197 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #13 ENSGT00940000162353.h #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00390000004757.`b.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n ENSGT00940000162390 Drill MODERN SPECIES 1605 HLA-DOB (ENSMLEG00000044332) #14 TAP2 (ENSMLEG00000040111) #15 PSMB8 (ENSMLEG00000028732) #16 TAP1 (ENSMLEG00000042023) #17 PSMB9 (ENSMLEG00000009919) #18 ENSMLEG00000033307 HLA-DMB (ENSMLEG00000032921) #19 HLA-DMA (ENSMLEG00000039758) #21 ENSMLEG00000035779 ENSMLEG00000042296 #22 HLA-DOA (ENSMLEG00000037836) #23 ENSMLEG00000035946 Sooty mangabey MODERN SPECIES 451 HLA-DQA1 (ENSCATG00000012156) HLA-DQB1 (ENSCATG00000030073) #13 ENSCATG00000036138 #14 TAP2 (ENSCATG00000038838) #15 PSMB8 (ENSCATG00000024878) #16 TAP1 (ENSCATG00000033980) #17 PSMB9 (ENSCATG00000041856) #18 ENSCATG00000037243 HLA-DMB (ENSCATG00000024024) #19 HLA-DMA (ENSCATG00000030669) #21 ENSCATG00000037729 ENSCATG00000034965 #22 HLA-DOA (ENSCATG00000035917) #23 ENSCATG00000024393 HLA-DPB1 (ENSCATG00000038170) Olive baboon MODERN SPECIES 16 CDSN (ENSPANG00000047914) PSORS1C2 (ENSPANG00000024487) ENSPANG00000049186 CCHCR1 (ENSPANG00000017010) TCF19 (ENSPANG00000024035) ENSPANG00000007627 ENSPANG00000044498 HLA-DOB (ENSPANG00000016388) #14 TAP2 (ENSPANG00000015103) #15 PSMB8 (ENSPANG00000016588) #16 TAP1 (ENSPANG00000024178) #17 PSMB9 (ENSPANG00000033974) #18 HLA-DMB (ENSPANG00000019593) #19 HLA-DMA (ENSPANG00000026492) #21 ENSPANG00000035618 BRD2 (ENSPANG00000019626) #22 HLA-DOA (ENSPANG00000031879) #23 HLA-DPA1 (ENSPANG00000018967) HLA-DPB1 (ENSPANG00000005764) COL11A2 (ENSPANG00000009194) #24 RXRB (ENSPANG00000018527) #25 SLC39A7 (ENSPANG00000023633) #26 HSD17B8 (ENSPANG00000023634) #27 RING1 (ENSPANG00000023635) #28 VPS52 (ENSPANG00000026491) #30 RPS18 (ENSPANG00000029306) #31 B3GALT4 (ENSPANG00000040674) #32 WDR46 (ENSPANG00000009193) #33 PFDN6 (ENSPANG00000025458) #34 RGL2 (ENSPANG00000023572) #35 TAPBP (ENSPANG00000022348) #37 Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00940000162450 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000161821 #12 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Lemuriformes_a ANCESTRAL SPECIES 76 ENSGT00940000163287 ENSGT00940000162079 #7 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000162892 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 872 HLA-DQB1 (ENSPCOG00000014494) #13 HLA-DOB (ENSPCOG00000022286) #14 TAP2 (ENSPCOG00000014799) #15 PSMB8 (ENSPCOG00000028091) #16 TAP1 (ENSPCOG00000019389) #17 PSMB9 (ENSPCOG00000017686) #18 HLA-DMB (ENSPCOG00000018934) #19 HLA-DMA (ENSPCOG00000022072) #21 ENSPCOG00000016191 ENSPCOG00000018456 #22 ENSPCOG00000018880 HLA-DOA (ENSPCOG00000014372) #23 HLA-DPA1 (ENSPCOG00000015236) Coquerels sifaka MODERN SPECIES 611 CPZ (ENSPCOG00000018885) TRMT44 (ENSPCOG00000028809) ACOX3 (ENSPCOG00000015967) HTRA3 (ENSPCOG00000015549) NANP (ENSPCOG00000022703) ENSPCOG00000014381 NINL (ENSPCOG00000019338) GINS1 (ENSPCOG00000016034) ABHD12 (ENSPCOG00000022073) PYGB (ENSPCOG00000021348) ENTPD6 (ENSPCOG00000022862) VSX1 (ENSPCOG00000013919) ACSS1 (ENSPCOG00000018745) APMAP (ENSPCOG00000023592) CST7 (ENSPCOG00000019725) ENSPCOG00000023905 #22 SYNDIG1 (ENSPCOG00000003880) ENSPCOG00000021349 Greater bamboo lemur MODERN SPECIES 650 ENSPSMG00000007220 #7 ENSPSMG00000007226 #8 HLA-DRA (ENSPSMG00000007272) #9 ENSPSMG00000007912 #11 ENSPSMG00000008349 HLA-DQB1 (ENSPSMG00000008743) #13 HLA-DOB (ENSPSMG00000008851) #14 TAP2 (ENSPSMG00000008940) #15 PSMB8 (ENSPSMG00000009083) #16 TAP1 (ENSPSMG00000009102) #17 PSMB9 (ENSPSMG00000009117) #18 HLA-DMB (ENSPSMG00000009134) #19 HLA-DMA (ENSPSMG00000009171) #21 BRD2 (ENSPSMG00000009223) #22 ENSPSMG00000009252 HLA-DOA (ENSPSMG00000009261) #23 HLA-DPA1 (ENSPSMG00000009402) HLA-DPB1 (ENSPSMG00000009639) ENSPSMG00000009792 Mouse lemur MODERN SPECIES 28 CYP21A2 (ENSMICG00000016652) ENSMICG00000046247 ENSMICG00000016667 ATF6B (ENSMICG00000047519) PRRT1 (ENSMICG00000032288) PPT2 (ENSMICG00000001807) EGFL8 (ENSMICG00000042415) AGPAT1 (ENSMICG00000001813) RNF5 (ENSMICG00000048108) AGER (ENSMICG00000001823) PBX2 (ENSMICG00000001829) GPSM3 (ENSMICG00000026321) NOTCH4 (ENSMICG00000001835) HLA-DMB (ENSMICG00000043729) #19 HLA-DMA (ENSMICG00000010132) #21 BRD2 (ENSMICG00000003693) #22 HLA-DOA (ENSMICG00000047683) #23 HLA-DPA1 (ENSMICG00000003711) HLA-DPB1 (ENSMICG00000030867) ENSMICG00000001373 COL11A2 (ENSMICG00000000879) #24 RXRB (ENSMICG00000000899) #25 SLC39A7 (ENSMICG00000000905) #26 HSD17B8 (ENSMICG00000000908) #27 RING1 (ENSMICG00000030050) #28 VPS52 (ENSMICG00000027900) #30 ENSMICG00000035485 #31 WDR46 (ENSMICG00000000916) #33 PFDN6 (ENSMICG00000000922) #34 RGL2 (ENSMICG00000000926) #35 TAPBP (ENSMICG00000042293) #37 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 220 ENSOGAG00000015917 ENSOGAG00000033148 CYP4F115 (ENSOGAG00000011748) CYP4F113 (ENSOGAG00000007410) ENSOGAG00000028565 CYP4F112 (ENSOGAG00000031204) CYP4F111 (ENSOGAG00000002017) CYP4F3 (ENSOGAG00000032860) CYP4F22 (ENSOGAG00000030936) ENSOGAG00000024112 PGLYRP2 (ENSOGAG00000026199) RASAL3 (ENSOGAG00000033656) WIZ (ENSOGAG00000010952) AKAP8L (ENSOGAG00000010943) AKAP8 (ENSOGAG00000029564) ENSOGAG00000000840 #22 EPHX3 (ENSOGAG00000006687) NOTCH3 (ENSOGAG00000006680) ENSOGAG00000024942 ILVBL (ENSOGAG00000014020) SYDE1 (ENSOGAG00000014015) OR1I1 (ENSOGAG00000003203) CASP14 (ENSOGAG00000024750) CCDC105 (ENSOGAG00000011860) SLC1A6 (ENSOGAG00000029166) ENSOGAG00000033292 OR7C2 (ENSOGAG00000031212) ENSOGAG00000025389 ENSOGAG00000028478 ENSOGAG00000026639 Bushbaby MODERN SPECIES 146 ENSOGAG00000013069 #10 ENSOGAG00000025050 #7 BTNL2 (ENSOGAG00000008396) #8 HLA-DRA (ENSOGAG00000008398) #9 ENSOGAG00000009732 #10 ENSOGAG00000030012 ENSOGAG00000008401 #12 HLA-DQB1 (ENSOGAG00000005662) #13 ENSOGAG00000031343 #15 PSMB8 (ENSOGAG00000013830) #16 TAP1 (ENSOGAG00000013836) #17 PSMB9 (ENSOGAG00000013846) #18 ENSOGAG00000013823 #15 HLA-DMB (ENSOGAG00000032749) #19 HLA-DMA (ENSOGAG00000006029) #21 BRD2 (ENSOGAG00000006473) #22 HLA-DOA (ENSOGAG00000014685) #23 HLA-DPA1 (ENSOGAG00000006476) ENSOGAG00000016138 ENSOGAG00000034269 COL11A2 (ENSOGAG00000025975) #24 RXRB (ENSOGAG00000011689) #25 SLC39A7 (ENSOGAG00000030006) #26 HSD17B8 (ENSOGAG00000006214) #27 RING1 (ENSOGAG00000006220) #28 VPS52 (ENSOGAG00000006222) #30 RPS18 (ENSOGAG00000006225) #31 B3GALT4 (ENSOGAG00000006228) #32 WDR46 (ENSOGAG00000006230) #33 ENSOGAG00000028341 #34 RGL2 (ENSOGAG00000003996) #35 Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154993 #10 ENSGT00940000155371.m.a #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Eulipotyphla ANCESTRAL SPECIES 124 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 Common shrew MODERN SPECIES 6707 HLA-DMB (ENSSARG00000006772) #19 HLA-DMA (ENSSARG00000006783) #21 BRD2 (ENSSARG00000006789) #22 Hedgehog MODERN SPECIES 8504 ENSEEUG00000010670 #19 BRD2 (ENSEEUG00000010734) #22 COL11A2 (ENSEEUG00000010805) #24 RXRB (ENSEEUG00000012064) #25 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154993 #10 ENSGT00940000155371.m.a #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000154993 #10 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT01030000234972 ENSGT00940000161403 #35 Artiodactyla_a ANCESTRAL SPECIES 19 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000155371.m.b #11 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000154993 #10 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Camelidae ANCESTRAL SPECIES 13 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371.m.a.b.a #11 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b.ib #13 ENSGT00940000155371.m.b #11 ENSGT00940000154723.b.jb #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Alpaca MODERN SPECIES 2774 ENSVPAG00000008046 #19 BRD2 (ENSVPAG00000008048) #22 HLA-DOA (ENSVPAG00000008049) #23 HLA-DPA1 (ENSVPAG00000008050) ENSVPAG00000008051 Arabian camel MODERN SPECIES 12 ENSCDRG00005021434 #11 ENSCDRG00005021439 #11 ENSCDRG00005021448 #12 ENSCDRG00005021452 #13 ENSCDRG00005021455 #13 TAP2 (ENSCDRG00005021460) #15 ENSCDRG00005021466 #11 ENSCDRG00005021469 #12 ENSCDRG00005021472 #13 HLA-DOB (ENSCDRG00005021474) #14 PSMB8 (ENSCDRG00005021475) #16 TAP1 (ENSCDRG00005021477) #17 PSMB9 (ENSCDRG00005021480) #18 HLA-DMB (ENSCDRG00005021484) #19 HLA-DMA (ENSCDRG00005021489) #21 BRD2 (ENSCDRG00005021496) #22 HLA-DOA (ENSCDRG00005021502) #23 HLA-DPA1 (ENSCDRG00005021505) HLA-DPB1 (ENSCDRG00005021506) COL11A2 (ENSCDRG00005021542) #24 RXRB (ENSCDRG00005021632) #25 SLC39A7 (ENSCDRG00005021641) #26 HSD17B8 (ENSCDRG00005021643) #27 RING1 (ENSCDRG00005021646) #28 VPS52 (ENSCDRG00005021653) #30 RPS18 (ENSCDRG00005021659) #31 B3GALT4 (ENSCDRG00005021661) #32 WDR46 (ENSCDRG00005021663) #33 PFDN6 (ENSCDRG00005021673) #34 RGL2 (ENSCDRG00005021678) #35 TAPBP (ENSCDRG00005021686) #37 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d #12 ENSGT00940000155371.m.a.a #11 ENSGT00940000154993 #10 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000161821.c.b #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Pecora ANCESTRAL SPECIES 21 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d #12 ENSGT00940000155371.m.a.b.a #11 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000154993 #10 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.c.b #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Yarkand deer MODERN SPECIES 30 MLIP (ENSCHYG00000004113) TINAG (ENSCHYG00000004199) LRRC1 (ENSCHYG00000004239) KLHL31 (ENSCHYG00000004258) GCLC (ENSCHYG00000004293) ENSCHYG00000004336 #11 ENSCHYG00000004358 #12 ENSCHYG00000004368 #13 HLA-DOB (ENSCHYG00000004391) #14 TAP2 (ENSCHYG00000004426) #15 PSMB8 (ENSCHYG00000004467) #16 TAP1 (ENSCHYG00000004483) #17 ENSCHYG00000004500 #18 HLA-DMB (ENSCHYG00000004514) #19 HLA-DMA (ENSCHYG00000004520) #21 BRD2 (ENSCHYG00000004539) #22 HLA-DOA (ENSCHYG00000004561) #23 COL11A2 (ENSCHYG00000004624) #24 RING1 (ENSCHYG00000004682) #28 VPS52 (ENSCHYG00000004695) #30 RPS18 (ENSCHYG00000004733) #31 B3GALT4 (ENSCHYG00000004743) #32 WDR46 (ENSCHYG00000004759) #33 PFDN6 (ENSCHYG00000004871) #34 RGL2 (ENSCHYG00000004896) #35 TAPBP (ENSCHYG00000004933) #37 ZBTB22 (ENSCHYG00000004990) #36 DAXX (ENSCHYG00000005013) SMIM40 (ENSCHYG00000005026) KIFC1 (ENSCHYG00000005051) PHF1 (ENSCHYG00000005145) Percora_a ANCESTRAL SPECIES 12 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Siberian musk deer MODERN SPECIES 355 FAM83B (ENSMMSG00000020897) TINAG (ENSMMSG00000020918) MLIP (ENSMMSG00000021042) LRRC1 (ENSMMSG00000021202) KLHL31 (ENSMMSG00000021339) GCLC (ENSMMSG00000021373) ENSMMSG00000021536 #11 ENSMMSG00000022087 #12 ENSMMSG00000022107 #13 HLA-DOB (ENSMMSG00000022133) #14 TAP1 (ENSMMSG00000022156) #17 PSMB8 (ENSMMSG00000022217) #16 PSMB9 (ENSMMSG00000022236) #18 HLA-DMB (ENSMMSG00000022257) #19 HLA-DMA (ENSMMSG00000022283) #21 BRD2 (ENSMMSG00000022334) #22 HLA-DOA (ENSMMSG00000022389) #23 COL11A2 (ENSMMSG00000022475) #24 RXRB (ENSMMSG00000023046) #25 SLC39A7 (ENSMMSG00000023058) #26 HSD17B8 (ENSMMSG00000023067) #27 RING1 (ENSMMSG00000023081) #28 VPS52 (ENSMMSG00000023094) #30 RPS18 (ENSMMSG00000023117) #31 B3GALT4 (ENSMMSG00000023125) #32 WDR46 (ENSMMSG00000023133) #33 ENSMMSG00000023143 #34 RGL2 (ENSMMSG00000023157) #35 TAPBP (ENSMMSG00000023185) #37 ZBTB22 (ENSMMSG00000023203) #36 DAXX (ENSMMSG00000023208) Bovidae ANCESTRAL SPECIES 13 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b.nb #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Caprinae ANCESTRAL SPECIES 16 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b.nb #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Goat MODERN SPECIES 15 ENSCHIG00000020109 LRRC1 (ENSCHIG00000021002) KLHL31 (ENSCHIG00000003573) GCLC (ENSCHIG00000013397) ENSCHIG00000009662 #11 ENSCHIG00000022158 #12 ENSCHIG00000013102 #13 HLA-DOB (ENSCHIG00000010527) #14 ENSCHIG00000019853 TAP2 (ENSCHIG00000017732) #15 PSMB8 (ENSCHIG00000012829) #16 TAP1 (ENSCHIG00000021983) #17 PSMB9 (ENSCHIG00000021513) #18 HLA-DMB (ENSCHIG00000026519) #19 HLA-DMA (ENSCHIG00000009464) #21 BRD2 (ENSCHIG00000013946) #22 HLA-DOA (ENSCHIG00000014302) #23 COL11A2 (ENSCHIG00000012269) #24 RXRB (ENSCHIG00000010266) #25 SLC39A7 (ENSCHIG00000024209) #26 HSD17B8 (ENSCHIG00000017839) #27 RING1 (ENSCHIG00000015685) #28 VPS52 (ENSCHIG00000023524) #30 RPS18 (ENSCHIG00000025263) ##31 B3GALT4 (ENSCHIG00000013295) #32 WDR46 (ENSCHIG00000017786) #33 ENSCHIG00000021078 #34 RGL2 (ENSCHIG00000009307) #35 TAPBP (ENSCHIG00000010108) #37 ZBTB22 (ENSCHIG00000003375) #36 ENSCHIG00000013938 Rambouillet Sheep MODERN SPECIES 12 GCLC (ENSOARG00020024970) ENSOARG00020025012 #11 ENSOARG00020025022 #12 ENSOARG00020025038 #12 ENSOARG00020025077 #13 DYA (ENSOARG00020025089) #12 ENSOARG00020025100 ENSOARG00020025111 #13 HLA-DOB (ENSOARG00020025120) #14 TAP2 (ENSOARG00020025129) #15 PSMB8 (ENSOARG00020025156) #16 TAP1 (ENSOARG00020025187) #17 ENSOARG00020025249 #18 HLA-DMB (ENSOARG00020025272) #19 HLA-DMA (ENSOARG00020025286) #21 BRD2 (ENSOARG00020011534) #22 HLA-DOA (ENSOARG00020011582) #23 COL11A2 (ENSOARG00020011636) #24 RXRB (ENSOARG00020011980) #25 SLC39A7 (ENSOARG00020012152) #26 HSD17B8 (ENSOARG00020012212) #27 RING1 (ENSOARG00020012299) #28 VPS52 (ENSOARG00020012385) #30 RPS18 (ENSOARG00020012536) #31 B3GALT4 (ENSOARG00020012594) #32 WDR46 (ENSOARG00020012626) #33 PFDN6 (ENSOARG00020012726) #34 RGL2 (ENSOARG00020012842) #35 TAPBP (ENSOARG00020013171) #37 ZBTB22 (ENSOARG00020013358) #36 DAXX (ENSOARG00020013385) Bovinae ANCESTRAL SPECIES 9 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b.nb.d #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 American bison MODERN SPECIES 3186 MLIP (ENSBBBG00000016140) LRRC1 (ENSBBBG00000016027) KLHL31 (ENSBBBG00000002569) GCLC (ENSBBBG00000015998) ENSBBBG00000015836 #11 ENSBBBG00000015297 #12 ENSBBBG00000015280 #13 HLA-DOB (ENSBBBG00000015275) #14 TAP2 (ENSBBBG00000015257) #15 PSMB8 (ENSBBBG00000015244) #16 TAP1 (ENSBBBG00000015234) #17 PSMB9 (ENSBBBG00000003777) #18 ENSBBBG00000015200 HLA-DMB (ENSBBBG00000008914) #19 HLA-DMA (ENSBBBG00000015169) #21 BRD2 (ENSBBBG00000002785) #22 HLA-DOA (ENSBBBG00000015112) #23 ENSBBBG00000003746 #24 RXRB (ENSBBBG00000015089) #25 SLC39A7 (ENSBBBG00000014969) #26 HSD17B8 (ENSBBBG00000003696) #27 RING1 (ENSBBBG00000003692) #28 VPS52 (ENSBBBG00000003598) #30 RPS18 (ENSBBBG00000003625) #31 B3GALT4 (ENSBBBG00000003638) #32 WDR46 (ENSBBBG00000014933) #33 PFDN6 (ENSBBBG00000014925) #34 RGL2 (ENSBBBG00000000845) #35 TAPBP (ENSBBBG00000000871) #37 ZBTB22 (ENSBBBG00000000917) #36 DAXX (ENSBBBG00000000938) Bos ANCESTRAL SPECIES 17 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b.nb.d #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Bos_b ANCESTRAL SPECIES 8 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b.nb.d #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Hybrid Bos Indicus MODERN SPECIES 15 ENSBIXG00005015134 LRRC1 (ENSBIXG00005002222) KLHL31 (ENSBIXG00005007502) GCLC (ENSBIXG00005015026) ENSBIXG00005014945 #11 ENSBIXG00005014931 #12 ENSBIXG00005007128 #13 HLA-DOB (ENSBIXG00005014905) #14 TAP2 (ENSBIXG00005014872) #15 PSMB8 (ENSBIXG00005014824) #16 TAP1 (ENSBIXG00005014801) #17 PSMB9 (ENSBIXG00005014787) #18 ENSBIXG00005014770 HLA-DMB (ENSBIXG00005014762) #19 HLA-DMA (ENSBIXG00005014743) #21 BRD2 (ENSBIXG00005014704) #22 HLA-DOA (ENSBIXG00005014640) #23 COL11A2 (ENSBIXG00005014598) #24 RXRB (ENSBIXG00005014520) #25 SLC39A7 (ENSBIXG00005014473) #26 HSD17B8 (ENSBIXG00005001937) #27 RING1 (ENSBIXG00005006128) #28 VPS52 (ENSBIXG00005014413) #30 RPS18 (ENSBIXG00005006736) ##31 B3GALT4 (ENSBIXG00005014338) #32 WDR46 (ENSBIXG00005014304) #33 PFDN6 (ENSBIXG00005014270) #34 RGL2 (ENSBIXG00005014224) #35 TAPBP (ENSBIXG00005006125) #37 ZBTB22 (ENSBIXG00005014096) #36 DAXX (ENSBIXG00005001833) Cow MODERN SPECIES 15 MLIP (ENSBTAG00000014581) LRRC1 (ENSBTAG00000017533) KLHL31 (ENSBTAG00000018167) GCLC (ENSBTAG00000015571) DSB (ENSBTAG00000050757) #11 BOLA-DYA (ENSBTAG00000002581) #12 BOLA-DYB (ENSBTAG00000045923) #13 BOLA-DOB (ENSBTAG00000047707) #14 TAP2 (ENSBTAG00000003038) #15 PSMB8 (ENSBTAG00000003039) #16 TAP1 (ENSBTAG00000008953) #17 PSMB9 (ENSBTAG00000008954) #18 H2B (ENSBTAG00000051545) BOLA-DMB (ENSBTAG00000012451) #19 BOLA-DMA (ENSBTAG00000015730) #21 BRD2 (ENSBTAG00000011074) #22 BOLA-DOA (ENSBTAG00000006490) #23 COL11A2 (ENSBTAG00000000601) #24 RXRB (ENSBTAG00000000602) #25 SLC39A7 (ENSBTAG00000008191) #26 HSD17B8 (ENSBTAG00000020927) #27 RING1 (ENSBTAG00000018884) #28 VPS52 (ENSBTAG00000002643) #30 RPS18 (ENSBTAG00000002648) ##31 B3GALT4 (ENSBTAG00000025669) #32 WDR46 (ENSBTAG00000016824) #33 PFDN6 (ENSBTAG00000010723) #34 RGL2 (ENSBTAG00000016827) #35 TAPBP (ENSBTAG00000016828) #37 ZBTB22 (ENSBTAG00000016829) #36 DAXX (ENSBTAG00000016830) Bos_a ANCESTRAL SPECIES 11 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #12 ENSGT00940000154723.b.nb.d #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.o.a #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Domestic yak DUPLICATION Domestic yak MODERN SPECIES 27 ENSBGRG00000024308 ENSBGRG00000024300 ENSBGRG00000024282 ENSBGRG00000024273 ENSBGRG00000024190 ENSBGRG00000024011 ENSBGRG00000023854 ENSBGRG00000023633 ENSBGRG00000022876 CYP4F22 (ENSBGRG00000022745) PGLYRP2 (ENSBGRG00000022693) RASAL3 (ENSBGRG00000022665) WIZ (ENSBGRG00000022240) AKAP8L (ENSBGRG00000022043) AKAP8 (ENSBGRG00000021898) ENSBGRG00000021854 #22 ENSBGRG00000021799 EPHX3 (ENSBGRG00000021673) NOTCH3 (ENSBGRG00000018066) ENSBGRG00000017844 ILVBL (ENSBGRG00000017727) SYDE1 (ENSBGRG00000017591) ENSBGRG00000017568 ENSBGRG00000017455 CASP14 (ENSBGRG00000017337) CCDC105 (ENSBGRG00000017152) SLC1A6 (ENSBGRG00000016741) ENSBGRG00000016668 ENSBGRG00000016627 ENSBGRG00000016606 ENSBGRG00000016595 Domestic yak MODERN SPECIES 16 MLIP (ENSBGRG00000023693) LRRC1 (ENSBGRG00000023507) KLHL31 (ENSBGRG00000023447) GCLC (ENSBGRG00000022619) ENSBGRG00000022571 ENSBGRG00000022508 #11 ENSBGRG00000022452 #12 ENSBGRG00000022408 #13 HLA-DOB (ENSBGRG00000022347) #14 TAP2 (ENSBGRG00000022189) #15 PSMB8 (ENSBGRG00000022108) #16 TAP1 (ENSBGRG00000022060) #17 ENSBGRG00000021991 #18 HLA-DMB (ENSBGRG00000021922) #19 HLA-DMA (ENSBGRG00000021851) #21 BRD2 (ENSBGRG00000021629) #22 HLA-DOA (ENSBGRG00000021588) #23 COL11A2 (ENSBGRG00000019137) #24 RXRB (ENSBGRG00000019018) #25 SLC39A7 (ENSBGRG00000018980) #26 HSD17B8 (ENSBGRG00000018839) #27 RING1 (ENSBGRG00000018754) #28 VPS52 (ENSBGRG00000018459) #30 B3GALT4 (ENSBGRG00000018285) #32 WDR46 (ENSBGRG00000017950) #33 PFDN6 (ENSBGRG00000017800) #34 RGL2 (ENSBGRG00000017715) #35 TAPBP (ENSBGRG00000017312) #37 ZBTB22 (ENSBGRG00000017270) #36 DAXX (ENSBGRG00000017181) SMIM40 (ENSBGRG00000017145) Wild yak DUPLICATION Wild yak MODERN SPECIES 1619 ENSBMUG00000011458 ENSBMUG00000011482 ENSBMUG00000011515 ENSBMUG00000011552 ENSBMUG00000011627 ENSBMUG00000011731 ENSBMUG00000011774 ENSBMUG00000011822 ENSBMUG00000011875 CYP4F22 (ENSBMUG00000011890) PGLYRP2 (ENSBMUG00000011932) RASAL3 (ENSBMUG00000011972) WIZ (ENSBMUG00000012029) AKAP8L (ENSBMUG00000012103) AKAP8 (ENSBMUG00000012119) ENSBMUG00000012134 #22 ENSBMUG00000012143 EPHX3 (ENSBMUG00000012149) NOTCH3 (ENSBMUG00000013018) ENSBMUG00000013201 ILVBL (ENSBMUG00000013223) ENSBMUG00000013242 ENSBMUG00000013258 ENSBMUG00000013277 ENSBMUG00000013302 CASP14 (ENSBMUG00000013317) CCDC105 (ENSBMUG00000013339) ENSBMUG00000013356 ENSBMUG00000013368 ENSBMUG00000013377 ENSBMUG00000013410 Wild yak MODERN SPECIES 401 LRRC1 (ENSBMUG00000005342) KLHL31 (ENSBMUG00000005354) GCLC (ENSBMUG00000005430) ENSBMUG00000006036 #11 ENSBMUG00000007873 #12 ENSBMUG00000007890 #13 HLA-DOB (ENSBMUG00000007908) #14 TAP2 (ENSBMUG00000007931) #15 PSMB8 (ENSBMUG00000007942) #16 TAP1 (ENSBMUG00000007967) #17 PSMB9 (ENSBMUG00000007982) #18 ENSBMUG00000007993 HLA-DMB (ENSBMUG00000008003) #19 HLA-DMA (ENSBMUG00000008047) #21 BRD2 (ENSBMUG00000008066) #22 HLA-DOA (ENSBMUG00000008090) #23 COL11A2 (ENSBMUG00000008342) #24 RXRB (ENSBMUG00000008461) #25 SLC39A7 (ENSBMUG00000008706) #26 HSD17B8 (ENSBMUG00000008752) #27 RING1 (ENSBMUG00000008786) #28 VPS52 (ENSBMUG00000008802) #30 ENSBMUG00000008818 #31 B3GALT4 (ENSBMUG00000008835) #32 WDR46 (ENSBMUG00000008867) #33 PFDN6 (ENSBMUG00000008885) #34 RGL2 (ENSBMUG00000008900) #35 TAPBP (ENSBMUG00000008952) #37 ZBTB22 (ENSBMUG00000008980) #36 DAXX (ENSBMUG00000008993) Cetacea ANCESTRAL SPECIES 7 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.g #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Blue whale MODERN SPECIES 2 HCRTR2 (ENSBMSG00010011945) FAM83B (ENSBMSG00010011937) TINAG (ENSBMSG00010011903) MLIP (ENSBMSG00010011840) LRRC1 (ENSBMSG00010011758) KLHL31 (ENSBMSG00010011739) GCLC (ENSBMSG00010011645) ENSBMSG00010011564 #11 HLA-DOB (ENSBMSG00010011526) #14 TAP2 (ENSBMSG00010011505) #15 PSMB8 (ENSBMSG00010011493) #16 TAP1 (ENSBMSG00010011477) #17 PSMB9 (ENSBMSG00010011462) #18 HLA-DMB (ENSBMSG00010011446) #19 HLA-DMA (ENSBMSG00010011432) #21 BRD2 (ENSBMSG00010011399) #22 HLA-DOA (ENSBMSG00010011380) #23 ENSBMSG00010011366 COL11A2 (ENSBMSG00010010982) #24 RXRB (ENSBMSG00010010818) #25 SLC39A7 (ENSBMSG00010010802) #26 HSD17B8 (ENSBMSG00010010786) #27 ENSBMSG00010010769 #28 VPS52 (ENSBMSG00010010756) #30 RPS18 (ENSBMSG00010010743) #31 B3GALT4 (ENSBMSG00010010736) #32 WDR46 (ENSBMSG00010010725) #33 ENSBMSG00010010714 #34 RGL2 (ENSBMSG00010010689) #35 TAPBP (ENSBMSG00010010652) #37 ZBTB22 (ENSBMSG00010010638) #36 Odontoceti ANCESTRAL SPECIES 5 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.g #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.g #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Odontoceti_b ANCESTRAL SPECIES 6 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000154732.q.b.a ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.g #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Monodontidae ANCESTRAL SPECIES 4 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000154732.q.b.a ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022.g #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Narwhal MODERN SPECIES 310 FAM83B (ENSMMNG00015013752) TINAG (ENSMMNG00015013728) ENSMMNG00015013701 MLIP (ENSMMNG00015013648) LRRC1 (ENSMMNG00015013594) KLHL31 (ENSMMNG00015013579) GCLC (ENSMMNG00015013551) ENSMMNG00015013533 #11 HLA-DOB (ENSMMNG00015013519) #14 TAP2 (ENSMMNG00015013343) #15 PSMB8 (ENSMMNG00015013325) #16 TAP1 (ENSMMNG00015013311) #17 PSMB9 (ENSMMNG00015013288) #18 HLA-DMB (ENSMMNG00015013276) #19 HLA-DMA (ENSMMNG00015013256) #21 BRD2 (ENSMMNG00015013179) #22 ENSMMNG00015013152 HLA-DOA (ENSMMNG00015013123) #23 ENSMMNG00015013117 COL11A2 (ENSMMNG00015012846) #24 RXRB (ENSMMNG00015012697) #25 SLC39A7 (ENSMMNG00015012682) #26 HSD17B8 (ENSMMNG00015012658) #27 ENSMMNG00015012638 #28 VPS52 (ENSMMNG00015012607) #30 ENSMMNG00015012591 #31 B3GALT4 (ENSMMNG00015012584) #32 WDR46 (ENSMMNG00015012564) #33 PFDN6 (ENSMMNG00015012541) #34 RGL2 (ENSMMNG00015012522) #35 TAPBP (ENSMMNG00015012480) #37 Beluga whale MODERN SPECIES 8 FAM83B (ENSDLEG00000021984) TINAG (ENSDLEG00000021985) ENSDLEG00000021986 MLIP (ENSDLEG00000021987) LRRC1 (ENSDLEG00000021988) ENSDLEG00000021989 KLHL31 (ENSDLEG00000021990) GCLC (ENSDLEG00000021991) ENSDLEG00000021992 #11 TAP2 (ENSDLEG00000021994) #15 PSMB8 (ENSDLEG00000021995) #16 TAP1 (ENSDLEG00000021996) #17 PSMB9 (ENSDLEG00000008143) #18 HLA-DMB (ENSDLEG00000008166) #19 HLA-DMA (ENSDLEG00000008210) #21 BRD2 (ENSDLEG00000008248) #22 ENSDLEG00000008322 HLA-DOA (ENSDLEG00000008482) #23 COL11A2 (ENSDLEG00000008562) #24 RXRB (ENSDLEG00000008760) #25 SLC39A7 (ENSDLEG00000008789) #26 HSD17B8 (ENSDLEG00000008819) #27 RING1 (ENSDLEG00000008919) #28 VPS52 (ENSDLEG00000008948) #30 RPS18 (ENSDLEG00000009077) #31 B3GALT4 (ENSDLEG00000009097) #32 WDR46 (ENSDLEG00000009126) #33 PFDN6 (ENSDLEG00000009394) #34 RGL2 (ENSDLEG00000009432) #35 ENSDLEG00000009529 TAPBP (ENSDLEG00000009539) #37 Vaquita MODERN SPECIES 2 HCRTR2 (ENSPSNG00000016655) FAM83B (ENSPSNG00000016755) TINAG (ENSPSNG00000016830) MLIP (ENSPSNG00000017046) ENSPSNG00000017462 KLHL31 (ENSPSNG00000017492) GCLC (ENSPSNG00000017555) ENSPSNG00000017762 #11 HLA-DOB (ENSPSNG00000017969) #14 TAP2 (ENSPSNG00000018051) #15 PSMB8 (ENSPSNG00000018160) #16 TAP1 (ENSPSNG00000018201) #17 PSMB9 (ENSPSNG00000018232) #18 HLA-DMB (ENSPSNG00000018284) #19 HLA-DMA (ENSPSNG00000018364) #21 BRD2 (ENSPSNG00000018549) #22 ENSPSNG00000018620 HLA-DOA (ENSPSNG00000018672) #23 ENSPSNG00000018732 COL11A2 (ENSPSNG00000019010) #24 RXRB (ENSPSNG00000020305) #25 SLC39A7 (ENSPSNG00000020344) #26 HSD17B8 (ENSPSNG00000020389) #27 RING1 (ENSPSNG00000020433) #28 VPS52 (ENSPSNG00000020483) #30 B3GALT4 (ENSPSNG00000020525) #32 WDR46 (ENSPSNG00000020574) #33 PFDN6 (ENSPSNG00000020614) #34 RGL2 (ENSPSNG00000011206) #35 TAPBP (ENSPSNG00000011408) #37 ZBTB22 (ENSPSNG00000011484) #36 Dolphin MODERN SPECIES 2738 HLA-DOB (ENSTTRG00000004249) #14 TAP2 (ENSTTRG00000004254) #15 PSMB8 (ENSTTRG00000004259) #16 TAP1 (ENSTTRG00000004264) #17 PSMB9 (ENSTTRG00000004272) #18 HLA-DMB (ENSTTRG00000004276) #19 HLA-DMA (ENSTTRG00000004277) #21 BRD2 (ENSTTRG00000004278) #22 HLA-DOA (ENSTTRG00000004282) #23 COL11A2 (ENSTTRG00000004283) #24 RXRB (ENSTTRG00000004291) #25 SLC39A7 (ENSTTRG00000004293) #26 HSD17B8 (ENSTTRG00000004294) #27 RING1 (ENSTTRG00000004296) #28 VPS52 (ENSTTRG00000004298) #30 RPS18 (ENSTTRG00000004302) #31 WDR46 (ENSTTRG00000004304) #33 PFDN6 (ENSTTRG00000004306) #34 RGL2 (ENSTTRG00000004307) #35 TAPBP (ENSTTRG00000004309) #37 ZBTB22 (ENSTTRG00000004311) #36 DAXX (ENSTTRG00000004312) Sperm whale DUPLICATION Sperm whale MODERN SPECIES 9 GFRAL (ENSPCTG00005020543) HCRTR2 (ENSPCTG00005020624) FAM83B (ENSPCTG00005020744) TINAG (ENSPCTG00005020766) MLIP (ENSPCTG00005020921) LRRC1 (ENSPCTG00005021134) KLHL31 (ENSPCTG00005021169) GCLC (ENSPCTG00005021190) ENSPCTG00005021294 HLA-DOB (ENSPCTG00005021383) #14 TAP2 (ENSPCTG00005021415) #15 PSMB8 (ENSPCTG00005021456) #16 TAP1 (ENSPCTG00005021480) #17 PSMB9 (ENSPCTG00005008969) #18 HLA-DMB (ENSPCTG00005009080) #19 ENSPCTG00005009114 #22 HLA-DOA (ENSPCTG00005009319) #23 COL11A2 (ENSPCTG00005009478) #24 RXRB (ENSPCTG00005011572) #25 SLC39A7 (ENSPCTG00005011775) #26 HSD17B8 (ENSPCTG00005011876) #27 RING1 (ENSPCTG00005011923) #28 ENSPCTG00005011963 KIFC1 (ENSPCTG00005012002) PHF1 (ENSPCTG00005012052) CUTA (ENSPCTG00005012115) SYNGAP1 (ENSPCTG00005012336) ENSPCTG00005014008 ZBTB9 (ENSPCTG00005014057) BAK1 (ENSPCTG00005014079) ENSPCTG00005014198 Sperm whale MODERN SPECIES 603 ENSPCTG00005016431 #21 ENSPCTG00005016571 #22 Suina ANCESTRAL SPECIES 17 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000155371.n #11 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00940000158644 ENSGT00940000159467 ENSGT00730000111274 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 Pig MODERN SPECIES 15 ENSSSCG00000031336 #11 ENSSSCG00000061569 #11 ENSSSCG00000001455 #11 ENSSSCG00000001456 #12 SLA-DQB1 (ENSSSCG00000001457) #13 ENSSSCG00000043413 ENSSSCG00000001458 #11 ENSSSCG00000063263 #13 HLA-DOB (ENSSSCG00000001459) #14 TAP2 (ENSSSCG00000025593) #15 PSMB8 (ENSSSCG00000026951) #16 PSMB9 (ENSSSCG00000001463) #18 TAP1 (ENSSSCG00000025618) #17 SLA-DMB (ENSSSCG00000001469) #19 SLA-DMA (ENSSSCG00000001470) #21 BRD2 (ENSSSCG00000001471) #22 SLA-DOA (ENSSSCG00000001472) #23 COL11A2 (ENSSSCG00000001473) #24 RXRB (ENSSSCG00000001474) #25 SLC39A7 (ENSSSCG00000001475) #26 HSD17B8 (ENSSSCG00000001476) #27 RING1 (ENSSSCG00000001477) #28 BMP5 (ENSSSCG00000001478) HMGCLL1 (ENSSSCG00000001479) GFRAL (ENSSSCG00000001480) HCRTR2 (ENSSSCG00000001481) FAM83B (ENSSSCG00000001483) TINAG (ENSSSCG00000001484) MLIP (ENSSSCG00000001485) LRRC1 (ENSSSCG00000001486) KLHL31 (ENSSSCG00000001487) Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 769 TPM4 (ENSCWAG00000008256) ENSCWAG00000008234 ENSCWAG00000008205 ENSCWAG00000008182 ENSCWAG00000008119 ENSCWAG00000008036 CYP4F3 (ENSCWAG00000007816) ENSCWAG00000009707 ENSCWAG00000009689 CYP4F22 (ENSCWAG00000009588) PGLYRP2 (ENSCWAG00000009528) RASAL3 (ENSCWAG00000009433) WIZ (ENSCWAG00000009199) AKAP8L (ENSCWAG00000009126) AKAP8 (ENSCWAG00000009086) ENSCWAG00000009037 #22 ENSCWAG00000008990 EPHX3 (ENSCWAG00000008924) ENSCWAG00000008892 NOTCH3 (ENSCWAG00000008816) ILVBL (ENSCWAG00000008774) SYDE1 (ENSCWAG00000008680) OR1I1 (ENSCWAG00000008665) CASP14 (ENSCWAG00000008585) CCDC105 (ENSCWAG00000008495) SLC1A6 (ENSCWAG00000008123) ENSCWAG00000008078 ENSCWAG00000008055 ENSCWAG00000007999 ENSCWAG00000007986 ENSCWAG00000007935 Chacoan peccary MODERN SPECIES 782 ENSCWAG00000017173 BTNL2 (ENSCWAG00000017038) #8 HLA-DRA (ENSCWAG00000016997) #9 ENSCWAG00000016954 #10 ENSCWAG00000016932 #11 ENSCWAG00000016903 #12 HLA-DQB1 (ENSCWAG00000016835) #13 ENSCWAG00000016773 #14 ENSCWAG00000016717 #14 TAP2 (ENSCWAG00000016671) #15 PSMB8 (ENSCWAG00000016617) #16 TAP1 (ENSCWAG00000016313) #17 PSMB9 (ENSCWAG00000016225) #18 HLA-DMB (ENSCWAG00000016177) #19 HLA-DMA (ENSCWAG00000016104) #21 BRD2 (ENSCWAG00000015939) #22 HLA-DOA (ENSCWAG00000015899) #23 COL11A2 (ENSCWAG00000013860) #24 SLC39A7 (ENSCWAG00000013691) #26 HSD17B8 (ENSCWAG00000013599) #27 RING1 (ENSCWAG00000013538) #28 BMP5 (ENSCWAG00000013472) HMGCLL1 (ENSCWAG00000012792) GFRAL (ENSCWAG00000012676) HCRTR2 (ENSCWAG00000012598) FAM83B (ENSCWAG00000012542) TINAG (ENSCWAG00000012390) MLIP (ENSCWAG00000011825) LRRC1 (ENSCWAG00000011723) KLHL31 (ENSCWAG00000011695) GCLC (ENSCWAG00000011415) Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000154993 #10 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Carnivora ANCESTRAL SPECIES 4 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Caniformia ANCESTRAL SPECIES 3 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Canidae ANCESTRAL SPECIES 6 ENSGT00940000162450.p ENSGT00940000162079 #7 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815.g.b #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Red fox DUPLICATION Red fox MODERN SPECIES 5 ENSVVUG00000020319 ENSVVUG00000020321 ENSVVUG00000020322 ENSVVUG00000020323 ENSVVUG00000020324 ENSVVUG00000020325 ENSVVUG00000020329 CYP4F2 (ENSVVUG00000020330) CYP4F8 (ENSVVUG00000020339) CYP4F22 (ENSVVUG00000020345) PGLYRP2 (ENSVVUG00000020368) RASAL3 (ENSVVUG00000020370) WIZ (ENSVVUG00000020383) AKAP8L (ENSVVUG00000020394) AKAP8 (ENSVVUG00000020457) ENSVVUG00000020467 #22 EPHX3 (ENSVVUG00000020533) NOTCH3 (ENSVVUG00000020620) ILVBL (ENSVVUG00000021444) SYDE1 (ENSVVUG00000021449) ENSVVUG00000021453 CASP14 (ENSVVUG00000021454) CCDC105 (ENSVVUG00000021459) SLC1A6 (ENSVVUG00000021456) OR7C2 (ENSVVUG00000021463) ENSVVUG00000021464 ENSVVUG00000021466 ENSVVUG00000021467 ENSVVUG00000021468 ENSVVUG00000021469 ENSVVUG00000021470 Red fox MODERN SPECIES 7 ENSVVUG00000025071 #13 HLA-DOB (ENSVVUG00000025078) #14 TAP2 (ENSVVUG00000025111) #15 PSMB8 (ENSVVUG00000025115) #16 TAP1 (ENSVVUG00000025116) #17 PSMB9 (ENSVVUG00000025119) #18 HLA-DMB (ENSVVUG00000025122) #19 HLA-DMA (ENSVVUG00000025127) #21 BRD2 (ENSVVUG00000025130) #22 HLA-DOA (ENSVVUG00000025133) #23 HLA-DPA1 (ENSVVUG00000025137) ENSVVUG00000025174 RXRB (ENSVVUG00000025262) #25 SLC39A7 (ENSVVUG00000025265) #26 HSD17B8 (ENSVVUG00000025268) #27 RING1 (ENSVVUG00000025271) #28 ENSVVUG00000025286 #30 RPS18 (ENSVVUG00000025443) #31 B3GALT4 (ENSVVUG00000025447) #32 WDR46 (ENSVVUG00000025460) #33 PFDN6 (ENSVVUG00000025545) #34 RGL2 (ENSVVUG00000025551) #35 TAPBP (ENSVVUG00000025586) #37 ZBTB22 (ENSVVUG00000025590) #36 Canis_lupus ANCESTRAL SPECIES 11 ENSGT00940000162450.o ENSGT00940000162079 #7 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815.g.b #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.e.b #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Dingo DUPLICATION Dingo MODERN SPECIES 112 ENSCAFG00020009647 ENSCAFG00020009643 ENSCAFG00020009639 ENSCAFG00020009635 ENSCAFG00020009625 ENSCAFG00020009621 ENSCAFG00020009613 ENSCAFG00020009611 CYP4F8 (ENSCAFG00020009605) CYP4F22 (ENSCAFG00020009588) PGLYRP2 (ENSCAFG00020009549) RASAL3 (ENSCAFG00020009538) WIZ (ENSCAFG00020009522) AKAP8L (ENSCAFG00020009405) AKAP8 (ENSCAFG00020009384) ENSCAFG00020009378 #22 ENSCAFG00020009367 EPHX3 (ENSCAFG00020009361) NOTCH3 (ENSCAFG00020008048) ILVBL (ENSCAFG00020007952) SYDE1 (ENSCAFG00020007950) CASP14 (ENSCAFG00020007940) CCDC105 (ENSCAFG00020007933) SLC1A6 (ENSCAFG00020007848) OR1I1 (ENSCAFG00020007835) ENSCAFG00020007829 ENSCAFG00020007824 ENSCAFG00020007823 ENSCAFG00020007818 ENSCAFG00020007812 ENSCAFG00020007803 Dingo MODERN SPECIES 276 ENSCAFG00020001614 BTNL2 (ENSCAFG00020001628) #8 ENSCAFG00020001656 HLA-DRA (ENSCAFG00020001663) #9 ENSCAFG00020001671 #11 ENSCAFG00020001673 #12 HLA-DQB1 (ENSCAFG00020001679) #13 ENSCAFG00020001685 #13 HLA-DOB (ENSCAFG00020001693) #14 TAP2 (ENSCAFG00020001827) #15 PSMB8 (ENSCAFG00020002521) #16 TAP1 (ENSCAFG00020002523) #17 PSMB9 (ENSCAFG00020002528) #18 HLA-DMB (ENSCAFG00020002532) #19 HLA-DMA (ENSCAFG00020002536) #21 BRD2 (ENSCAFG00020002542) #22 HLA-DOA (ENSCAFG00020002545) #23 ENSCAFG00020002592 ENSCAFG00020003072 #24 ENSCAFG00020003093 #24 RXRB (ENSCAFG00020003098) #25 SLC39A7 (ENSCAFG00020003166) #26 HSD17B8 (ENSCAFG00020003175) #27 RING1 (ENSCAFG00020003221) #28 ENSCAFG00020003224 #30 RPS18 (ENSCAFG00020003254) #31 B3GALT4 (ENSCAFG00020003269) #32 WDR46 (ENSCAFG00020003271) #33 ENSCAFG00020003316 #34 RGL2 (ENSCAFG00020003330) #35 TAPBP (ENSCAFG00020003337) #37 Dog DUPLICATION Dog MODERN SPECIES 12 ENSCAFG00845015378 ENSCAFG00845015399 OR10H4D (ENSCAFG00845015413) ENSCAFG00845015428 OR10H4C (ENSCAFG00845015442) OR10H1E (ENSCAFG00845015463) OR10H5B (ENSCAFG00845015484) ENSCAFG00845015502 ENSCAFG00845015524 ENSCAFG00845015783 ENSCAFG00845016360 PGLYRP2 (ENSCAFG00845016433) RASAL3 (ENSCAFG00845016503) WIZ (ENSCAFG00845017125) AKAP8 (ENSCAFG00845017790) BRD4 (ENSCAFG00845018129) #22 EPHX3 (ENSCAFG00845018546) NOTCH3 (ENSCAFG00845018638) ILVBL (ENSCAFG00845018872) SYDE1 (ENSCAFG00845019022) OR1I1 (ENSCAFG00845019109) CASP14 (ENSCAFG00845019146) ENSCAFG00845019211 CCDC105 (ENSCAFG00845019260) SLC1A6 (ENSCAFG00845019363) OR7C19 (ENSCAFG00845019569) OR7A26 (ENSCAFG00845019591) ENSCAFG00845019620 OR7A56 (ENSCAFG00845019791) OR7A71 (ENSCAFG00845019809) ENSCAFG00845019840 Dog MODERN SPECIES 3 ENSCAFG00845016762 ENSCAFG00845016831 ENSCAFG00845016861 ENSCAFG00845016990 #7 ENSCAFG00845017104 BTNL2 (ENSCAFG00845017222) #8 ENSCAFG00845017367 DLA-DRA (ENSCAFG00845017467) #9 DLA-DQA1 (ENSCAFG00845017728) #12 HLA-DQB2 (ENSCAFG00845017781) #13 TAP2 (ENSCAFG00845017879) #15 PSMB8 (ENSCAFG00845018353) #17 PSMB9 (ENSCAFG00845018485) #18 DLA-DMB (ENSCAFG00845018536) #19 DLA-DMA (ENSCAFG00845018613) #21 BRD2 (ENSCAFG00845018726) #22 DLA-DOA (ENSCAFG00845018933) #23 ENSCAFG00845019114 COL11A2 (ENSCAFG00845019587) #24 RXRB (ENSCAFG00845020447) #25 SLC39A7 (ENSCAFG00845020536) #26 HSD17B8 (ENSCAFG00845020603) #27 RING1 (ENSCAFG00845020668) #28 VPS52 (ENSCAFG00845020730) #30 RPS18 (ENSCAFG00845020845) ##31 B3GALT4 (ENSCAFG00845020962) #32 WDR46 (ENSCAFG00845021010) #33 PFDN6 (ENSCAFG00845021180) #34 RGL2 (ENSCAFG00845021267) #35 TAPBP (ENSCAFG00845021421) #37 ZBTB22 (ENSCAFG00845021534) #36 Caniformia_b ANCESTRAL SPECIES 6 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Mustelinae ANCESTRAL SPECIES 65 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Ferret MODERN SPECIES 318 ENSMPUG00000001924 #14 ENSMPUG00000001931 #15 PSMB8 (ENSMPUG00000001933) #16 TAP1 (ENSMPUG00000001935) #17 PSMB9 (ENSMPUG00000001940) #18 HLA-DMB (ENSMPUG00000001943) #19 HLA-DMA (ENSMPUG00000001944) #21 ENSMPUG00000001954 BRD2 (ENSMPUG00000001955) #22 HLA-DOA (ENSMPUG00000001958) #23 ENSMPUG00000001959 HLA-DPA1 (ENSMPUG00000001961) ENSMPUG00000001964 COL11A2 (ENSMPUG00000001968) #24 RXRB (ENSMPUG00000002273) #25 SLC39A7 (ENSMPUG00000002276) #26 RING1 (ENSMPUG00000002279) #28 VPS52 (ENSMPUG00000002300) #30 RPS18 (ENSMPUG00000002306) ##31 B3GALT4 (ENSMPUG00000018786) #32 ENSMPUG00000002317 #33 PFDN6 (ENSMPUG00000002364) #34 RGL2 (ENSMPUG00000002376) #35 TAPBP (ENSMPUG00000002383) #37 American mink DUPLICATION American mink MODERN SPECIES 58 ENSNVIG00000012069 ENSNVIG00000012064 ENSNVIG00000012057 ENSNVIG00000012037 ENSNVIG00000012034 ENSNVIG00000012029 ENSNVIG00000011997 CYP4F8 (ENSNVIG00000011913) CYP4F22 (ENSNVIG00000011878) PGLYRP2 (ENSNVIG00000011872) ENSNVIG00000011832 ENSNVIG00000011824 WIZ (ENSNVIG00000011787) AKAP8L (ENSNVIG00000011745) AKAP8 (ENSNVIG00000011718) ENSNVIG00000011695 #22 ENSNVIG00000011673 EPHX3 (ENSNVIG00000011630) NOTCH3 (ENSNVIG00000011559) ILVBL (ENSNVIG00000011526) SYDE1 (ENSNVIG00000011499) OR1I1 (ENSNVIG00000011479) CASP14 (ENSNVIG00000011472) CCDC105 (ENSNVIG00000011457) SLC1A6 (ENSNVIG00000011419) OR7C2 (ENSNVIG00000011412) ENSNVIG00000011407 ENSNVIG00000011405 American mink MODERN SPECIES 609 HLA-DOB (ENSNVIG00000004582) #14 TAP2 (ENSNVIG00000004605) #15 PSMB8 (ENSNVIG00000004658) #16 TAP1 (ENSNVIG00000004678) #17 PSMB9 (ENSNVIG00000004695) #18 HLA-DMB (ENSNVIG00000004727) #19 HLA-DMA (ENSNVIG00000004747) #21 BRD2 (ENSNVIG00000004773) #22 HLA-DOA (ENSNVIG00000004843) #23 HLA-DPA1 (ENSNVIG00000004863) ENSNVIG00000004899 COL11A2 (ENSNVIG00000006062) #24 RXRB (ENSNVIG00000006480) #25 SLC39A7 (ENSNVIG00000006519) #26 HSD17B8 (ENSNVIG00000006535) #27 Ursidae ANCESTRAL SPECIES 37 ENSGT00940000164957 ENSGT00940000162484.d #8 ENSGT00940000160997 #9 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00950000183198.c.a.b.b.j ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.w #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.d #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Giant Panda MODERN SPECIES 15 ENSAMEG00000024700 ENSAMEG00000002434 #7 ENSAMEG00000002462 BTNL2 (ENSAMEG00000002403) #8 HLA-DRA (ENSAMEG00000002390) #9 ENSAMEG00000002342 #11 ENSAMEG00000024677 ENSAMEG00000026802 #13 HLA-DOB (ENSAMEG00000029901) #14 TAP2 (ENSAMEG00000002044) #15 PSMB8 (ENSAMEG00000002026) #16 TAP1 (ENSAMEG00000001976) #17 PSMB9 (ENSAMEG00000001961) #18 ENSAMEG00000027435 HLA-DMB (ENSAMEG00000001952) #19 BRD2 (ENSAMEG00000001926) #22 HLA-DOA (ENSAMEG00000001908) #23 HLA-DPA1 (ENSAMEG00000001901) ENSAMEG00000001900 COL11A2 (ENSAMEG00000001744) #24 RXRB (ENSAMEG00000001719) #25 SLC39A7 (ENSAMEG00000001707) #26 HSD17B8 (ENSAMEG00000001698) #27 RING1 (ENSAMEG00000001680) #28 VPS52 (ENSAMEG00000001640) #30 RPS18 (ENSAMEG00000001623) #31 B3GALT4 (ENSAMEG00000019752) #32 WDR46 (ENSAMEG00000001583) #33 PFDN6 (ENSAMEG00000001576) #34 RGL2 (ENSAMEG00000001533) #35 TAPBP (ENSAMEG00000001518) #37 Ursus ANCESTRAL SPECIES 53 ENSGT00940000162484.d #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00950000183198.c.a.b.b.j ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b.w #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512.d #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 American black bear DUPLICATION American black bear MODERN SPECIES 3208 ENSUAMG00000027235 #22 American black bear MODERN SPECIES 7213 HLA-DMB (ENSUAMG00000010123) #19 HLA-DMA (ENSUAMG00000010122) #21 BRD2 (ENSUAMG00000010121) #22 Polar bear DUPLICATION Polar bear MODERN SPECIES 291 ENSUMAG00000001172 ENSUMAG00000001184 ENSUMAG00000001197 ENSUMAG00000001207 ENSUMAG00000001217 ENSUMAG00000001240 ENSUMAG00000001258 ENSUMAG00000001272 CYP4F3 (ENSUMAG00000001302) CYP4F22 (ENSUMAG00000001342) PGLYRP2 (ENSUMAG00000001695) RASAL3 (ENSUMAG00000001780) ENSUMAG00000001868 AKAP8L (ENSUMAG00000001892) AKAP8 (ENSUMAG00000001928) ENSUMAG00000001954 #22 EPHX3 (ENSUMAG00000002156) NOTCH3 (ENSUMAG00000002388) ILVBL (ENSUMAG00000003567) OR1I1 (ENSUMAG00000003584) CASP14 (ENSUMAG00000003591) CCDC105 (ENSUMAG00000003609) SLC1A6 (ENSUMAG00000003627) Polar bear MODERN SPECIES 184 HLA-DRA (ENSUMAG00000012775) #9 ENSUMAG00000012771 #11 ENSUMAG00000012768 #12 HLA-DQB2 (ENSUMAG00000012766) #13 ENSUMAG00000012761 ENSUMAG00000012755 #11 HLA-DOB (ENSUMAG00000012747) #14 TAP2 (ENSUMAG00000012745) #15 PSMB8 (ENSUMAG00000012731) #16 TAP1 (ENSUMAG00000012701) #17 PSMB9 (ENSUMAG00000012694) #18 ENSUMAG00000012692 HLA-DMB (ENSUMAG00000012688) #19 HLA-DMA (ENSUMAG00000012683) #21 ENSUMAG00000012662 #22 ENSUMAG00000012634 #22 HLA-DOA (ENSUMAG00000012626) #23 ENSUMAG00000012616 ENSUMAG00000012592 #24 RXRB (ENSUMAG00000012569) #25 SLC39A7 (ENSUMAG00000012560) #26 HSD17B8 (ENSUMAG00000012548) #27 RING1 (ENSUMAG00000012543) #28 VPS52 (ENSUMAG00000012525) #30 RPS18 (ENSUMAG00000012521) #31 WDR46 (ENSUMAG00000012375) #33 PFDN6 (ENSUMAG00000012363) #34 RGL2 (ENSUMAG00000012351) #35 TAPBP (ENSUMAG00000012349) #37 ZBTB22 (ENSUMAG00000012348) #36 DAXX (ENSUMAG00000012343) Polar bear MODERN SPECIES 184 ENSUMAG00000012781 #8 HLA-DRA (ENSUMAG00000012775) #9 ENSUMAG00000012771 #11 ENSUMAG00000012768 #12 HLA-DQB2 (ENSUMAG00000012766) #13 ENSUMAG00000012761 ENSUMAG00000012755 #11 HLA-DOB (ENSUMAG00000012747) #14 TAP2 (ENSUMAG00000012745) #15 PSMB8 (ENSUMAG00000012731) #16 TAP1 (ENSUMAG00000012701) #17 PSMB9 (ENSUMAG00000012694) #18 ENSUMAG00000012692 HLA-DMB (ENSUMAG00000012688) #19 HLA-DMA (ENSUMAG00000012683) #21 ENSUMAG00000012662 #22 ENSUMAG00000012634 #22 HLA-DOA (ENSUMAG00000012626) #23 ENSUMAG00000012616 ENSUMAG00000012592 #24 RXRB (ENSUMAG00000012569) #25 SLC39A7 (ENSUMAG00000012560) #26 HSD17B8 (ENSUMAG00000012548) #27 RING1 (ENSUMAG00000012543) #28 VPS52 (ENSUMAG00000012525) #30 RPS18 (ENSUMAG00000012521) #31 WDR46 (ENSUMAG00000012375) #33 PFDN6 (ENSUMAG00000012363) #34 RGL2 (ENSUMAG00000012351) #35 TAPBP (ENSUMAG00000012349) #37 ZBTB22 (ENSUMAG00000012348) #36 Felidae ANCESTRAL SPECIES 5 ENSGT00940000162079 #7 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993 #10 ENSGT00940000155371.n.a.a #11 ENSGT00940000155371.n.a.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390.p ENSGT00940000162390.q ENSGT00940000159762.cc #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798.h #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Cat DUPLICATION Cat MODERN SPECIES 236 ENSFCAG00000043390 #37 ENSFCAG00000049571 #36 DAXX (ENSFCAG00000004020) ENSFCAG00000053744 ENSFCAG00000052131 ENSFCAG00000041443 ENSFCAG00000040474 #14 ENSFCAG00000009202 #11 ENSFCAG00000045700 #15 ENSFCAG00000043821 #16 ENSFCAG00000042456 #17 ENSFCAG00000044069 #18 ENSFCAG00000050701 ENSFCAG00000045369 #19 ENSFCAG00000009442 #21 ENSFCAG00000042841 #22 ENSFCAG00000042732 #23 ENSFCAG00000044012 ENSFCAG00000041258 COL11A2 (ENSFCAG00000004005) #24 ENSFCAG00000006981 #25 ENSFCAG00000006984 #26 ENSFCAG00000043560 #30 ENSFCAG00000004010 #28 ENSFCAG00000045696 #31 B3GALT4 (ENSFCAG00000004015) #32 WDR46 (ENSFCAG00000004016) #33 ENSFCAG00000046037 #34 ENSFCAG00000042019 #35 ENSFCAG00000004017 #37 ENSFCAG00000050206 #36 Cat MODERN SPECIES 236 ENSFCAG00000037191 ENSFCAG00000045335 ENSFCAG00000024834 #7 ENSFCAG00000028529 BTNL2 (ENSFCAG00000001685) #8 ENSFCAG00000029158 #9 ENSFCAG00000046253 #11 ENSFCAG00000041575 #14 ENSFCAG00000035701 #15 ENSFCAG00000023131 #16 ENSFCAG00000042806 #17 ENSFCAG00000030632 #18 ENSFCAG00000051485 ENSFCAG00000040910 #19 ENSFCAG00000041486 #21 ENSFCAG00000009696 #22 ENSFCAG00000009697 #23 ENSFCAG00000012247 ENSFCAG00000041523 ENSFCAG00000047214 #24 ENSFCAG00000046454 #24 ENSFCAG00000042526 #25 ENSFCAG00000050544 ENSFCAG00000046098 #26 HSD17B8 (ENSFCAG00000006986) #27 ENSFCAG00000041942 #28 VPS52 (ENSFCAG00000004011) #30 ENSFCAG00000041843 #31 ENSFCAG00000052529 #32 ENSFCAG00000051171 #33 ENSFCAG00000028199 #34 Panthera ANCESTRAL SPECIES 7 ENSGT00940000162079 #7 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000154993.a.a #10 ENSGT00940000155371.n.a.a #11 ENSGT00940000155371.n.a.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390.p ENSGT00940000159762.cc #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798.h #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Tiger MODERN SPECIES 415 ENSPTIG00000006752 #7 ENSPTIG00000006731 BTNL2 (ENSPTIG00000006701) #8 ENSPTIG00000006461 #10 HLA-DRA (ENSPTIG00000006439) #9 ENSPTIG00000006308 #11 ENSPTIG00000006266 #11 HLA-DOB (ENSPTIG00000006225) #14 TAP2 (ENSPTIG00000006162) #15 PSMB8 (ENSPTIG00000006141) #16 TAP1 (ENSPTIG00000006078) #17 PSMB9 (ENSPTIG00000006050) #18 HLA-DMB (ENSPTIG00000006035) #19 HLA-DMA (ENSPTIG00000006011) #21 ENSPTIG00000006002 BRD2 (ENSPTIG00000005977) #22 HLA-DOA (ENSPTIG00000005964) #23 HLA-DPA1 (ENSPTIG00000005948) HLA-DPB1 (ENSPTIG00000005931) COL11A2 (ENSPTIG00000005735) #24 RXRB (ENSPTIG00000005607) #25 SLC39A7 (ENSPTIG00000005581) #26 HSD17B8 (ENSPTIG00000005554) #27 RING1 (ENSPTIG00000005545) #28 VPS52 (ENSPTIG00000005504) #30 RPS18 (ENSPTIG00000005481) ##31 B3GALT4 (ENSPTIG00000005451) #32 WDR46 (ENSPTIG00000005439) #33 PFDN6 (ENSPTIG00000005409) #34 RGL2 (ENSPTIG00000005355) #35 TAPBP (ENSPTIG00000005317) #37 Panthera_a ANCESTRAL SPECIES 4 ENSGT00940000155371.n.a.a #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390.p ENSGT00940000159762.cc #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798.h #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 leopard DUPLICATION leopard MODERN SPECIES 68 ENSPPRG00000020871 ENSPPRG00000020886 ENSPPRG00000020898 ENSPPRG00000022821 ENSPPRG00000020913 ENSPPRG00000000160 CYP4F3 (ENSPPRG00000001769) ENSPPRG00000002280 ENSPPRG00000002620 CYP4F22 (ENSPPRG00000002745) ENSPPRG00000003320 RASAL3 (ENSPPRG00000004906) ENSPPRG00000006238 AKAP8L (ENSPPRG00000009539) AKAP8 (ENSPPRG00000010081) ENSPPRG00000010955 #22 ENSPPRG00000011126 EPHX3 (ENSPPRG00000012477) NOTCH3 (ENSPPRG00000014001) ILVBL (ENSPPRG00000014803) SYDE1 (ENSPPRG00000017777) CASP14 (ENSPPRG00000021751) CCDC105 (ENSPPRG00000022023) SLC1A6 (ENSPPRG00000024748) ENSPPRG00000021678 ENSPPRG00000021692 ENSPPRG00000021715 ENSPPRG00000021727 ENSPPRG00000021739 ENSPPRG00000024155 ENSPPRG00000023301 leopard MODERN SPECIES 30 HLA-DOB (ENSPPRG00000010507) #14 TAP2 (ENSPPRG00000010234) #15 PSMB8 (ENSPPRG00000010024) #16 TAP1 (ENSPPRG00000009806) #17 PSMB9 (ENSPPRG00000008776) #18 HLA-DMB (ENSPPRG00000004964) #19 HLA-DMA (ENSPPRG00000004582) #21 ENSPPRG00000003175 ENSPPRG00000003003 #22 ENSPPRG00000002715 #22 HLA-DOA (ENSPPRG00000002484) #23 HLA-DPA1 (ENSPPRG00000002267) HLA-DPB1 (ENSPPRG00000002022) COL11A2 (ENSPPRG00000001194) #24 RXRB (ENSPPRG00000010222) #25 SLC39A7 (ENSPPRG00000009227) #26 HSD17B8 (ENSPPRG00000008960) #27 RING1 (ENSPPRG00000008873) #28 VPS52 (ENSPPRG00000007986) #30 RPS18 (ENSPPRG00000006936) #31 B3GALT4 (ENSPPRG00000006033) #32 WDR46 (ENSPPRG00000005881) #33 PFDN6 (ENSPPRG00000005109) #34 RGL2 (ENSPPRG00000004409) #35 leopard MODERN SPECIES 30 HLA-DOB (ENSPPRG00000010507) #14 TAP2 (ENSPPRG00000010234) #15 PSMB8 (ENSPPRG00000010024) #16 TAP1 (ENSPPRG00000009806) #17 PSMB9 (ENSPPRG00000008776) #18 HLA-DMB (ENSPPRG00000004964) #19 HLA-DMA (ENSPPRG00000004582) #21 ENSPPRG00000003175 ENSPPRG00000003003 #22 ENSPPRG00000002715 #22 HLA-DOA (ENSPPRG00000002484) #23 HLA-DPA1 (ENSPPRG00000002267) HLA-DPB1 (ENSPPRG00000002022) COL11A2 (ENSPPRG00000001194) #24 RXRB (ENSPPRG00000010222) #25 SLC39A7 (ENSPPRG00000009227) #26 HSD17B8 (ENSPPRG00000008960) #27 RING1 (ENSPPRG00000008873) #28 VPS52 (ENSPPRG00000007986) #30 RPS18 (ENSPPRG00000006936) #31 B3GALT4 (ENSPPRG00000006033) #32 WDR46 (ENSPPRG00000005881) #33 PFDN6 (ENSPPRG00000005109) #34 RGL2 (ENSPPRG00000004409) #35 TAPBP (ENSPPRG00000003578) #37 lion DUPLICATION lion MODERN SPECIES 2 ENSPLOG00000001031 ENSPLOG00000001019 ENSPLOG00000001003 ENSPLOG00000000987 ENSPLOG00000000975 ENSPLOG00000000957 ENSPLOG00000000908 ENSPLOG00000000866 ENSPLOG00000000847 CYP4F22 (ENSPLOG00000000828) PGLYRP2 (ENSPLOG00000000711) RASAL3 (ENSPLOG00000000606) WIZ (ENSPLOG00000000541) AKAP8L (ENSPLOG00000000459) AKAP8 (ENSPLOG00000000489) ENSPLOG00000000417 #22 ENSPLOG00000000383 EPHX3 (ENSPLOG00000000351) NOTCH3 (ENSPLOG00000000296) ILVBL (ENSPLOG00000000240) SYDE1 (ENSPLOG00000000218) CASP14 (ENSPLOG00000000190) CCDC105 (ENSPLOG00000000174) SLC1A6 (ENSPLOG00000000144) ENSPLOG00000000117 ENSPLOG00000000103 ENSPLOG00000000099 ENSPLOG00000000090 OR7C1 (ENSPLOG00000000087) ENSPLOG00000000082 ENSPLOG00000000064 lion MODERN SPECIES 5 ENSPLOG00000006575 #11 HLA-DOB (ENSPLOG00000006603) #14 TAP2 (ENSPLOG00000006623) #15 PSMB8 (ENSPLOG00000006662) #16 TAP1 (ENSPLOG00000006688) #17 PSMB9 (ENSPLOG00000006713) #18 ENSPLOG00000006735 HLA-DMB (ENSPLOG00000006753) #19 HLA-DMA (ENSPLOG00000006786) #21 BRD2 (ENSPLOG00000006871) #22 HLA-DOA (ENSPLOG00000006926) #23 HLA-DPA1 (ENSPLOG00000006949) ENSPLOG00000007166 COL11A2 (ENSPLOG00000007928) #24 RXRB (ENSPLOG00000009094) #25 SLC39A7 (ENSPLOG00000009206) #26 HSD17B8 (ENSPLOG00000009241) #27 RING1 (ENSPLOG00000009313) #28 VPS52 (ENSPLOG00000009344) #30 RPS18 (ENSPLOG00000009471) #31 B3GALT4 (ENSPLOG00000009525) #32 WDR46 (ENSPLOG00000009542) #33 PFDN6 (ENSPLOG00000009614) #34 RGL2 (ENSPLOG00000009682) #35 TAPBP (ENSPLOG00000009777) #37 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT00530000064839 ENSGT00940000162079.d #7 ENSGT00940000164957 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #12 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Equus ANCESTRAL SPECIES 10 ENSGT00940000155371.n.g.a #11 ENSGT00940000161821.c.a #12 ENSGT00940000154723.b.z.a #13 ENSGT00940000161821.c.b #12 ENSGT00940000154723.b.y #13 ENSGT00940000155371.n.h #11 ENSGT00940000155371.n.g.b #11 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Donkey MODERN SPECIES 28 ENSEASG00005003380 #13 HLA-DQB1 (ENSEASG00005012362) #13 ENSEASG00005031301 #12 ENSEASG00005020693 #11 ENSEASG00005014836 #12 ENSEASG00005033717 #14 ENSEASG00005017377 #11 ENSEASG00005020739 #14 TAP2 (ENSEASG00005020743) #15 PSMB8 (ENSEASG00005020748) #16 TAP1 (ENSEASG00005020750) #17 PSMB9 (ENSEASG00005020754) #18 HLA-DMB (ENSEASG00005020759) #19 HLA-DMA (ENSEASG00005020764) #21 ENSEASG00005032605 BRD2 (ENSEASG00005020770) #22 HLA-DOA (ENSEASG00005020773) #23 COL11A2 (ENSEASG00005030115) #24 RXRB (ENSEASG00005020792) #25 SLC39A7 (ENSEASG00005020798) #26 RING1 (ENSEASG00005020805) #28 VPS52 (ENSEASG00005020809) #30 RPS18 (ENSEASG00005020817) #31 B3GALT4 (ENSEASG00005035058) #32 WDR46 (ENSEASG00005020823) #33 PFDN6 (ENSEASG00005035417) #34 RGL2 (ENSEASG00005020835) #35 ZBTB22 (ENSEASG00005020850) #36 DAXX (ENSEASG00005020852) SMIM40 (ENSEASG00005020856) KIFC1 (ENSEASG00005020860) Horse DUPLICATION Horse MODERN SPECIES 13 FAM32A (ENSECAG00000017554) HSH2D (ENSECAG00000016757) TPM4 (ENSECAG00000022254) RAB8A (ENSECAG00000053880) CYP4F127P (ENSECAG00000019543) ENSECAG00000058777 ENSECAG00000046973 CYP4F119 (ENSECAG00000019949) ENSECAG00000034511 ENSECAG00000046401 CYP4F22 (ENSECAG00000012358) RASAL3 (ENSECAG00000009236) WIZ (ENSECAG00000008043) AKAP8L (ENSECAG00000023532) AKAP8 (ENSECAG00000015084) BRD4 (ENSECAG00000030438) #22 EPHX3 (ENSECAG00000018245) ENSECAG00000037674 NOTCH3 (ENSECAG00000021331) ENSECAG00000054944 ENSECAG00000058722 ILVBL (ENSECAG00000017231) SYDE1 (ENSECAG00000016064) OR1I5 (ENSECAG00000004718) CASP14 (ENSECAG00000012619) CCDC105 (ENSECAG00000008463) SLC1A6 (ENSECAG00000018959) OR7A188 (ENSECAG00000037266) ENSECAG00000047702 ENSECAG00000056254 OR5T40 (ENSECAG00000030841) Horse MODERN SPECIES 12 ENSECAG00000022072 #11 Eqca-DQA1 (ENSECAG00000024259) #12 ENSECAG00000017143 #13 ENSECAG00000009142 #12 ENSECAG00000052533 #13 ENSECAG00000020358 #11 ENSECAG00000012933 #11 HLA-DOB (ENSECAG00000020976) #14 TAP2 (ENSECAG00000007152) #15 PSMB9 (ENSECAG00000016898) #18 PSMB8 (ENSECAG00000018887) #16 TAP1 (ENSECAG00000022610) #17 HLA-DMB (ENSECAG00000021796) #19 HLA-DMA (ENSECAG00000003669) #21 ENSECAG00000042051 BRD2 (ENSECAG00000012089) #22 HLA-DOA (ENSECAG00000006603) #23 COL11A2 (ENSECAG00000029028) #24 RXRB (ENSECAG00000023041) #25 SLC39A7 (ENSECAG00000004794) #26 HSD17B8 (ENSECAG00000058465) #27 RING1 (ENSECAG00000013736) #28 VPS52 (ENSECAG00000019702) #30 B3GALT4 (ENSECAG00000052593) #32 WDR46 (ENSECAG00000016548) #33 PFDN6 (ENSECAG00000055205) #34 RGL2 (ENSECAG00000000906) #35 TAPBP (ENSECAG00000015448) #37 ZBTB22 (ENSECAG00000019536) #36 DAXX (ENSECAG00000021055) KIFC1 (ENSECAG00000024196) Chiroptera ANCESTRAL SPECIES 3 ENSGT00940000162079.d #7 ENSGT00940000164957 ENSGT00940000162484.f #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162892 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Megabat MODERN SPECIES 3232 HLA-DMB (ENSPVAG00000012007) #19 HLA-DMA (ENSPVAG00000012008) #21 BRD2 (ENSPVAG00000012010) #22 HLA-DOA (ENSPVAG00000012013) #23 Microchiroptera ANCESTRAL SPECIES 4 ENSGT00940000162079.d #7 ENSGT00940000164957 ENSGT00940000162484.f #8 ENSGT00940000160997 #9 ENSGT00940000155371.n #11 ENSGT00940000161821.d #12 ENSGT00940000154723.b #13 ENSGT00940000162892 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Greater horseshoe bat MODERN SPECIES 21 ENSRFEG00010010130 HLA-DRA (ENSRFEG00010010177) #9 ENSRFEG00010010222 #11 ENSRFEG00010010287 #12 HLA-DQB2 (ENSRFEG00010010410) #13 ENSRFEG00010010549 #12 ENSRFEG00010010765 #13 ENSRFEG00010012374 ##29 ENSRFEG00010012490 HLA-DOB (ENSRFEG00010012534) #14 TAP2 (ENSRFEG00010012594) #15 PSMB8 (ENSRFEG00010012709) #16 TAP1 (ENSRFEG00010012779) #17 PSMB9 (ENSRFEG00010012800) #18 ENSRFEG00010012948 #21 BRD2 (ENSRFEG00010013276) #22 HLA-DOA (ENSRFEG00010013359) #23 HLA-DPA1 (ENSRFEG00010013424) HLA-DPB1 (ENSRFEG00010013529) COL11A2 (ENSRFEG00010013940) #24 RXRB (ENSRFEG00010014125) #25 SLC39A7 (ENSRFEG00010014223) #26 HSD17B8 (ENSRFEG00010014277) #27 RING1 (ENSRFEG00010014424) #28 VPS52 (ENSRFEG00010014510) #30 ENSRFEG00010014573 #31 B3GALT4 (ENSRFEG00010014737) #32 WDR46 (ENSRFEG00010014756) #33 ENSRFEG00010014998 #34 RGL2 (ENSRFEG00010015178) #35 TAPBP (ENSRFEG00010015262) #37 Microbat DUPLICATION Microbat MODERN SPECIES 1217 RAB8A (ENSMLUG00000006982) ENSMLUG00000016177 ENSMLUG00000009960 ENSMLUG00000017518 ENSMLUG00000029631 ENSMLUG00000026342 ENSMLUG00000028047 ENSMLUG00000023349 CYP4F8 (ENSMLUG00000024967) CYP4F22 (ENSMLUG00000005489) PGLYRP2 (ENSMLUG00000005486) RASAL3 (ENSMLUG00000027885) WIZ (ENSMLUG00000005482) AKAP8L (ENSMLUG00000005469) ENSMLUG00000027375 ENSMLUG00000004852 #22 EPHX3 (ENSMLUG00000029171) NOTCH3 (ENSMLUG00000004827) ILVBL (ENSMLUG00000004813) SYDE1 (ENSMLUG00000004803) OR1I1 (ENSMLUG00000015963) CASP14 (ENSMLUG00000025660) CCDC105 (ENSMLUG00000014791) SLC1A6 (ENSMLUG00000009325) OR7C2 (ENSMLUG00000009312) ENSMLUG00000025485 ENSMLUG00000029596 ENSMLUG00000029177 ENSMLUG00000025146 ENSMLUG00000027873 Microbat MODERN SPECIES 697 ENSMLUG00000009919 #22 Atlantogenata ANCESTRAL SPECIES 3 ENSGT00940000162484 #8 ENSGT00940000160997 #9 ENSGT00940000155371 #11 ENSGT00940000154993 #10 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Xenarthra ANCESTRAL SPECIES 66 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000161735 ENSGT00390000017030.b.b ENSGT00950000183180.a.b Armadillo MODERN SPECIES 4056 TAP2 (ENSDNOG00000034243) #15 PSMB8 (ENSDNOG00000045248) #16 TAP1 (ENSDNOG00000024030) #17 PSMB9 (ENSDNOG00000035353) #18 HLA-DMB (ENSDNOG00000045752) #19 HLA-DMA (ENSDNOG00000002005) #21 BRD2 (ENSDNOG00000006186) #22 HLA-DOA (ENSDNOG00000030617) #23 HLA-DPA1 (ENSDNOG00000043328) ENSDNOG00000045287 ENSDNOG00000037384 COL11A2 (ENSDNOG00000047004) #24 RXRB (ENSDNOG00000015431) #25 SLC39A7 (ENSDNOG00000015430) #26 RING1 (ENSDNOG00000019606) #28 ENSDNOG00000041084 VPS52 (ENSDNOG00000012056) #30 RPS18 (ENSDNOG00000012084) #31 WDR46 (ENSDNOG00000011191) #33 RGL2 (ENSDNOG00000011897) #35 ENSDNOG00000049289 KIFC1 (ENSDNOG00000016407) Sloth MODERN SPECIES 7529 BRD2 (ENSCHOG00000006027) #22 Afrotheria ANCESTRAL SPECIES 83 ENSGT00940000162484 #8 ENSGT00940000160997.m #9 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Afrotheria_a ANCESTRAL SPECIES 84 ENSGT00940000162484 #8 ENSGT00940000160997.m #9 ENSGT00940000161821 #12 ENSGT00940000154723.b #13 ENSGT00940000162353 #14 ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r ENSGT00940000162390 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000012691.d ##31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 Hyrax MODERN SPECIES 8416 BRD2 (ENSPCAG00000009077) #22 HLA-DOA (ENSPCAG00000009144) #23 Elephant DUPLICATION Elephant MODERN SPECIES 270 ENSLAFG00000030136 ENSLAFG00000027993 ENSLAFG00000031874 ENSLAFG00000026585 ENSLAFG00000030034 ENSLAFG00000003300 ENSLAFG00000029003 ENSLAFG00000029960 ENSLAFG00000030083 CYP4F22 (ENSLAFG00000023092) ENSLAFG00000008772 RASAL3 (ENSLAFG00000020948) WIZ (ENSLAFG00000004604) AKAP8L (ENSLAFG00000004599) AKAP8 (ENSLAFG00000026120) ENSLAFG00000030134 #22 EPHX3 (ENSLAFG00000000695) NOTCH3 (ENSLAFG00000031040) ENSLAFG00000031179 ENSLAFG00000025846 ILVBL (ENSLAFG00000003259) ENSLAFG00000030501 OR1I1 (ENSLAFG00000032391) CASP14 (ENSLAFG00000031913) CCDC105 (ENSLAFG00000000999) SLC1A6 (ENSLAFG00000011311) ENSLAFG00000032506 ENSLAFG00000002220 ENSLAFG00000027481 ENSLAFG00000026701 ENSLAFG00000029250 Elephant MODERN SPECIES 14 BTNL2 (ENSLAFG00000001025) #8 ENSLAFG00000001026 #9 ENSLAFG00000031292 #12 ENSLAFG00000018482 #13 ENSLAFG00000030016 #13 ENSLAFG00000029261 #13 HLA-DOB (ENSLAFG00000004052) #14 TAP2 (ENSLAFG00000028298) #15 PSMB8 (ENSLAFG00000003213) #16 TAP1 (ENSLAFG00000003214) #17 PSMB9 (ENSLAFG00000025736) #18 HLA-DMB (ENSLAFG00000004768) #19 HLA-DMA (ENSLAFG00000005738) #21 BRD2 (ENSLAFG00000016104) #22 HLA-DOA (ENSLAFG00000014863) #23 ENSLAFG00000029575 COL11A2 (ENSLAFG00000009548) #24 RXRB (ENSLAFG00000002141) #25 SLC39A7 (ENSLAFG00000002138) #26 HSD17B8 (ENSLAFG00000030087) #27 RING1 (ENSLAFG00000021706) #28 VPS52 (ENSLAFG00000004472) #30 ENSLAFG00000032173 ##31 B3GALT4 (ENSLAFG00000025898) #32 WDR46 (ENSLAFG00000012958) #33 PFDN6 (ENSLAFG00000012967) #34 RGL2 (ENSLAFG00000022913) #35 TAPBP (ENSLAFG00000032520) #37 ZBTB22 (ENSLAFG00000018510) #36 Tenrec DUPLICATION Tenrec MODERN SPECIES 797 ENSETEG00000007267 #22 EPHX3 (ENSETEG00000007262) Tenrec MODERN SPECIES 8430 BRD2 (ENSETEG00000008209) #22 Marsupialia ANCESTRAL SPECIES 2 ENSGT00940000160997 #9 ENSGT00940000154723.a.a ##13 ENSGT00940000161847.k ENSGT00950000183127.b.c.a ENSGT00980000198488.n.y.b.a ##29 ENSGT00940000160499.l #15 ENSGT01100000263562.b.a.a.c.b ENSGT00940000160499.k #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT00980000198488.n.y.a.a ##29 ENSGT00980000198488.n.y.b.b ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Marsupialia_b ANCESTRAL SPECIES 1 ENSGT00920000149187 ENSGT00940000162382 ENSGT00940000155779.a.b ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000162079.g.b #7 ENSGT00950000183127.b.c.b ENSGT00940000162498 ENSGT00940000164042.b ENSGT00940000160997 #9 ENSGT00980000198488.n.y.b.b ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Tasmanian devil MODERN SPECIES 3 CYP21A2 (ENSSHAG00000009476) TNXB (ENSSHAG00000009524) ATF6B (ENSSHAG00000010010) FKBPL (ENSSHAG00000021705) ENSSHAG00000024676 PPT2 (ENSSHAG00000010290) EGFL8 (ENSSHAG00000010328) AGPAT1 (ENSSHAG00000010364) RNF5 (ENSSHAG00000030853) AGER (ENSSHAG00000022656) PBX2 (ENSSHAG00000030132) ENSSHAG00000003189 #9 ENSSHAG00000001982 ##29 HLA-DMA (ENSSHAG00000003851) #21 HLA-DMB (ENSSHAG00000003762) #19 BRD2 (ENSSHAG00000001150) #22 COL11A2 (ENSSHAG00000005537) #24 RXRB (ENSSHAG00000006089) #25 ENSSHAG00000022792 #27 ENSSHAG00000030383 ##31 ENSSHAG00000023999 #34 RGL2 (ENSSHAG00000007263) #35 TAPBP (ENSSHAG00000025584) #37 ZBTB22 (ENSSHAG00000007426) #36 DAXX (ENSSHAG00000007459) PHF1 (ENSSHAG00000021541) ENSSHAG00000001198 CUTA (ENSSHAG00000002227) SYNGAP1 (ENSSHAG00000002507) ZBTB9 (ENSSHAG00000027893) BAK1 (ENSSHAG00000028586) Diprotodontia ANCESTRAL SPECIES 44 ENSGT00980000198488.n.y.b.b ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 ENSGT00390000009448 Wallaby MODERN SPECIES 10052 ENSMEUG00000015257 #22 Diprotodontia_a ANCESTRAL SPECIES 101 ENSGT00980000198488.n.y.b.b ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT01100000263519.A.b.a.b koala DUPLICATION koala MODERN SPECIES 190 ENSPCIG00000035109 ENSPCIG00000034279 ENSPCIG00000004796 ENSPCIG00000004785 ENSPCIG00000032799 ENSPCIG00000005143 ENSPCIG00000024857 CYP4F22 (ENSPCIG00000004755) ENSPCIG00000004728 ENSPCIG00000004722 RASAL3 (ENSPCIG00000004702) ENSPCIG00000004692 ENSPCIG00000004684 AKAP8L (ENSPCIG00000004037) AKAP8 (ENSPCIG00000004006) ENSPCIG00000003344 #22 ENSPCIG00000034860 EPHX3 (ENSPCIG00000003286) NOTCH3 (ENSPCIG00000026508) ENSPCIG00000026509 ILVBL (ENSPCIG00000003271) SYDE1 (ENSPCIG00000003261) OR1I1 (ENSPCIG00000003241) CASP14 (ENSPCIG00000003224) ENSPCIG00000003213 CCDC105 (ENSPCIG00000003198) SLC1A6 (ENSPCIG00000003178) ENSPCIG00000011974 ENSPCIG00000031404 ENSPCIG00000032437 ENSPCIG00000027489 koala MODERN SPECIES 254 ENSPCIG00000008629 #17 ENSPCIG00000009007 #15 ENSPCIG00000001719 ##29 ENSPCIG00000001804 ENSPCIG00000001868 #16 ENSPCIG00000005091 #17 ENSPCIG00000034822 ##29 ENSPCIG00000001943 ENSPCIG00000001956 #15 ENSPCIG00000008486 #16 ENSPCIG00000034298 #17 PSMB9 (ENSPCIG00000022552) #18 ENSPCIG00000036230 ##29 Phci-DMB (ENSPCIG00000019944) #19 HLA-DMA (ENSPCIG00000001972) #21 BRD2 (ENSPCIG00000002017) #22 COL11A2 (ENSPCIG00000031838) #24 RXRB (ENSPCIG00000002153) #25 ENSPCIG00000002180 HSD17B8 (ENSPCIG00000002203) #27 RING1 (ENSPCIG00000002578) #28 ENSPCIG00000036920 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 580 ENSVURG00010024921 ENSVURG00010024920 ENSVURG00010024919 ENSVURG00010024918 ENSVURG00010024917 ENSVURG00010024916 ENSVURG00010024909 ENSVURG00010024897 CYP4F22 (ENSVURG00010024894) PGLYRP2 (ENSVURG00010024892) RASAL3 (ENSVURG00010024888) WIZ (ENSVURG00010024884) AKAP8L (ENSVURG00010024874) AKAP8 (ENSVURG00010024869) ENSVURG00010024866 #22 ENSVURG00010024864 EPHX3 (ENSVURG00010024863) ENSVURG00010024861 NOTCH3 (ENSVURG00010024859) ENSVURG00010024857 ILVBL (ENSVURG00010024855) SYDE1 (ENSVURG00010024852) OR1I1 (ENSVURG00010024850) CASP14 (ENSVURG00010024849) ENSVURG00010024848 SLC1A6 (ENSVURG00010024846) ENSVURG00010024843 ENSVURG00010024842 ENSVURG00010024841 ENSVURG00010024840 Common wonbat MODERN SPECIES 1047 ENSVURG00010006216 #15 ENSVURG00010006448 ##29 ENSVURG00010006462 #15 ENSVURG00010006484 ENSVURG00010006738 ##29 PSMB8 (ENSVURG00010012199) #16 ENSVURG00010012252 #17 ENSVURG00010012508 #18 ENSVURG00010012584 ##29 ENSVURG00010014250 OSCAR (ENSVURG00010014253) ENSVURG00010014277 #15 ENSVURG00010014320 #17 HLA-DMB (ENSVURG00010014847) #19 HLA-DMA (ENSVURG00010014861) #21 BRD2 (ENSVURG00010014869) #22 ENSVURG00010014883 #24 RXRB (ENSVURG00010014890) #25 ENSVURG00010014948 RING1 (ENSVURG00010014982) #28 VPS52 (ENSVURG00010015001) #30 RPS18 (ENSVURG00010015031) ##31 B3GALT4 (ENSVURG00010015041) #32 WDR46 (ENSVURG00010015047) #33 PFDN6 (ENSVURG00010015063) #34 RGL2 (ENSVURG00010015079) #35 ENSVURG00010015107 #37 ZBTB22 (ENSVURG00010015135) #36 DAXX (ENSVURG00010015143) SMIM40 (ENSVURG00010015158) ENSVURG00010015167 Opossum DUPLICATION Opossum MODERN SPECIES 2 ENSMODG00000014822 ENSMODG00000023817 ENSMODG00000039842 ENSMODG00000047513 ENSMODG00000029440 CYP4F8 (ENSMODG00000014754) ENSMODG00000014717 ENSMODG00000023822 ENSMODG00000014674 ENSMODG00000014425 CYP4F22 (ENSMODG00000014622) PGLYRP2 (ENSMODG00000014610) WIZ (ENSMODG00000014589) AKAP8L (ENSMODG00000014581) AKAP8 (ENSMODG00000014573) ENSMODG00000040284 #22 ENSMODG00000014558 EPHX3 (ENSMODG00000041517) NOTCH3 (ENSMODG00000014540) ENSMODG00000050252 ILVBL (ENSMODG00000014519) SYDE1 (ENSMODG00000014508) ENSMODG00000048274 OR1I1 (ENSMODG00000014497) CASP14 (ENSMODG00000039253) ENSMODG00000014485 SLC1A6 (ENSMODG00000014481) ENSMODG00000014469 ENSMODG00000036910 ENSMODG00000044017 ENSMODG00000039698 Opossum MODERN SPECIES 1 OSCAR (ENSMODG00000010599) ENSMODG00000043833 #15 MHC-I (ENSMODG00000042965) ##29 ENSMODG00000047889 #12 ENSMODG00000010560 #15 ENSMODG00000044001 ##29 ENSMODG00000038708 ##29 PSMB8 (ENSMODG00000014366) #16 TAP1 (ENSMODG00000014352) #17 PSMB9 (ENSMODG00000046870) #18 ENSMODG00000050241 ##29 MODO-UK (ENSMODG00000014336) ##29 ENSMODG00000039629 ##29 HLA-DMB (ENSMODG00000014310) #19 ENSMODG00000029544 #21 BRD2 (ENSMODG00000014295) #22 RXRB (ENSMODG00000014249) #25 ENSMODG00000014239 HSD17B8 (ENSMODG00000014232) #27 RING1 (ENSMODG00000014169) #28 ENSMODG00000044597 ENSMODG00000029559 RPS18 (ENSMODG00000014210) #31 B3GALT4 (ENSMODG00000023738) #32 WDR46 (ENSMODG00000014202) #33 PFDN6 (ENSMODG00000014191) #34 RGL2 (ENSMODG00000014185) #35 TAPBP (ENSMODG00000014159) #37 ZBTB22 (ENSMODG00000014152) #36 DAXX (ENSMODG00000014146) SMIM40 (ENSMODG00000041725) Platypus MODERN SPECIES 86 ENSOANG00000048207 ORNANAV1R3015 (ENSOANG00000007358) ENSOANG00000009112 ENSOANG00000046016 ENSOANG00000015643 #9 ENSOANG00000037190 ##29 ENSOANG00000005224 ##29 TAP2 (ENSOANG00000004283) #15 PSMB8 (ENSOANG00000014541) #16 TAP1 (ENSOANG00000021021) #17 PSMB9 (ENSOANG00000041248) #18 ENSOANG00000044768 ##29 ENSOANG00000003398 ##29 ENSOANG00000046093 #19 ENSOANG00000045669 #21 BRD2 (ENSOANG00000040477) #22 ENSOANG00000043668 ENSOANG00000042230 #36 ENSOANG00000036542 #37 RGL2 (ENSOANG00000047778) #35 PFDN6 (ENSOANG00000046144) #34 ENSOANG00000049916 #33 B3GALT4 (ENSOANG00000043293) #32 RPS18 (ENSOANG00000036297) ##31 Sauria ANCESTRAL SPECIES 7 ENSGT00940000159250 ENSGT00940000154043.B ENSGT00530000063777.b ENSGT00940000158611 ENSGT01060000248660 ENSGT00940000158258 ENSGT00550000074822 ENSGT00550000075011 ENSGT00530000063861.b.b ENSGT00940000154549.a ENSGT00940000177865.c ENSGT01100000263475.d.a ENSGT00980000198488.n ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a ENSGT00940000156233 ENSGT00940000164497 ENSGT00940000154382.a.b ENSGT00390000008285 ENSGT00390000018446 ENSGT00390000017965 ENSGT00940000156166.a ENSGT00940000153846.a.a ENSGT00950000183210.d.a ENSGT00390000006452.b.b ENSGT00950000183180.b ENSGT00940000155468 ENSGT00940000153190.A ENSGT00940000155412.a.b Archelosauria ANCESTRAL SPECIES 53 ENSGT01100000263517.b.d ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263517.a.a ENSGT01100000263475.d.a ENSGT00980000198488.n ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00950000183127.b.g ENSGT00940000155371 #11 ENSGT00940000160997.a.a #9 ENSGT00940000161847 ENSGT00950000183127.b.h.a.a ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.d ##31 ENSGT00390000009448 ENSGT00940000160991 #36 ENSGT00940000159200 #37 Archosauria ANCESTRAL SPECIES 88 ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT01100000263475.d.a ENSGT00980000198488.n ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Aves ANCESTRAL SPECIES 83 ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT01100000263475.d.a.a.a ENSGT00980000198488.n ##29 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Neognathae ANCESTRAL SPECIES 56 ENSGT01090000260479 ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT01100000263517.b.d ENSGT00940000160499 #15 ENSGT00940000159023 #17 ENSGT00980000198488.n ##29 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Galloanserae ANCESTRAL SPECIES 74 ENSGT00950000183127.b.g ENSGT00980000198488.n ##29 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 Anatidae DUPLICATION Anatidae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.c #22 Pink-footed goose MODERN SPECIES 511 ENSABRG00000021439 ENSABRG00000021435 SLC44A2 (ENSABRG00000021426) ENSABRG00000021422 ENSABRG00000021421 ENSABRG00000021418 #22 Anatidae DUPLICATION Anatidae ANCESTRAL SPECIES 215 ENSGT00940000153385.b.a.b.d.a #22 ENSGT00940000161847 Pink-footed goose MODERN SPECIES 608 BRD2 (ENSABRG00000020806) #22 ENSABRG00000020809 ENSABRG00000020818 #24 Duck MODERN SPECIES 3685 ENSAPLG00000006561 #22 Anatidae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.d.b #22 Duck MODERN SPECIES 3791 ENSAPLG00000019562 #22 Phasianidae ANCESTRAL SPECIES 45 ENSGT01100000263475.d.a.b ENSGT01100000263475.d.a.a.a.a ENSGT00950000182966.C.a ENSGT00940000155565.e.b ENSGT00940000158338 ENSGT01100000263514.B ENSGT00940000160499 #15 ENSGT00940000159023 #17 ENSGT00980000198488.n.g ##29 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 Japanese quail DUPLICATION Japanese quail MODERN SPECIES 49 ENSCJPG00005001963 CHCHD5 (ENSCJPG00005001953) ATP13A1 (ENSCJPG00005001928) ENSCJPG00005001916 ENSCJPG00005001904 PBX4 (ENSCJPG00005001827) LPAR2 (ENSCJPG00005001815) GMIP (ENSCJPG00005001809) NXNL1 (ENSCJPG00005001803) SLC27A1 (ENSCJPG00005001797) PGLS (ENSCJPG00005001792) ENSCJPG00005001658 #22 Japanese quail MODERN SPECIES 7 ENSCJPG00005015693 ENSCJPG00005015694 LTB4R (ENSCJPG00005015695) ENSCJPG00005015696 CYP21A2 (ENSCJPG00005015697) ENSCJPG00005015698 ENSCJPG00005015699 ENSCJPG00005015700 ENSCJPG00005015701 ##29 TAP1 (ENSCJPG00005015702) #17 TAP2 (ENSCJPG00005015703) #15 ENSCJPG00005015704 ##29 ENSCJPG00005015705 ##29 ENSCJPG00005015707 #19 BRD2 (ENSCJPG00005015709) #22 ENSCJPG00005015710 ENSCJPG00005015724 #37 ENSCJPG00005015727 ENSCJPG00005015728 ENSCJPG00005015730 ENSCJPG00005015735 ENSCJPG00005015738 ENSCJPG00005015739 ENSCJPG00005015740 ENSCJPG00005015741 ENSCJPG00005015742 ENSCJPG00005015743 ENSCJPG00005015745 ENSCJPG00005015746 RACK1 (ENSCJPG00005015748) Phasianidae_b ANCESTRAL SPECIES 54 ENSGT00940000159023.a #17 ENSGT00940000160499 #15 ENSGT00980000198488.n.g ##29 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000155739 ENSGT00940000158338 ENSGT00940000155565.e.b ENSGT00950000182966.C.a ENSGT01100000263475.d.a.a.a.a ENSGT01100000263475.d.a.b Chicken DUPLICATION Chicken MODERN SPECIES 23 S1PR2 (ENSGALG00010002908) ELOF1 (ENSGALG00010003251) ACP5 (ENSGALG00010003260) NFIX (ENSGALG00010003273) ENSGALG00010003279 GADD45GIP1 (ENSGALG00010003292) RAD23A (ENSGALG00010003299) CALR (ENSGALG00010003305) FARSA (ENSGALG00010003352) SYCE2 (ENSGALG00010003374) GCDH (ENSGALG00010003403) GMIP (ENSGALG00010003439) NXNL1 (ENSGALG00010002913) SLC27A1 (ENSGALG00010002914) PGLS (ENSGALG00010002917) ENSGALG00010002919 #22 ENSGALG00010002985 Chicken MODERN SPECIES 7 ENSGALG00010001604 CD1C (ENSGALG00010003250) CD1B (ENSGALG00010003836) LTB4R (ENSGALG00010003212) ENSGALG00010003205 CYP21A1 (ENSGALG00010003186) CENPA (ENSGALG00010003178) C4 (ENSGALG00010003170) BF2 (ENSGALG00010003817) ##29 TAP2 (ENSGALG00010003159) #15 TAP1 (ENSGALG00010003131) #17 BF1 (ENSGALG00010003110) ##29 DMB2 (ENSGALG00010003830) #19 DMB1 (ENSGALG00010003825) #19 DMA (ENSGALG00010003090) #21 BRD2 (ENSGALG00010003068) #22 BLB2 (ENSGALG00010003022) TAPBP (ENSGALG00010003019) #37 BLB1 (ENSGALG00010002991) BLEC2 (ENSGALG00010002960) BLEC1 (ENSGALG00010002955) BG1 (ENSGALG00010002940) ENSGALG00010002881 ENSGALG00010002866 RACK1 (ENSGALG00010002855) TRIM41 (ENSGALG00010002825) TRIM27.1 (ENSGALG00010002810) TRIM39.1 (ENSGALG00010002798) TRIM27.2 (ENSGALG00010002784) TRIM39.2 (ENSGALG00010002768) SLURP1 (ENSGALG00010002739) Turkey DUPLICATION Turkey MODERN SPECIES 1010 ENSMGAG00000008498 #22 Turkey MODERN SPECIES 1296 ENSMGAG00000007899 #22 Neognathae_b DUPLICATION Neognathae_b DUPLICATION Neognathae_b ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeriformes ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Passeroidea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.a #22 Common canary DUPLICATION Common canary MODERN SPECIES 264 ENSSCAG00000006885 #22 ENSSCAG00000006882 #22 Common canary MODERN SPECIES 264 ENSSCAG00000006885 #22 ENSSCAG00000006882 #22 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 66 ENSTGUG00000027443 #22 ENSTGUG00000024395 #22 Zebra finch MODERN SPECIES 66 ENSTGUG00000027443 #22 ENSTGUG00000024395 #22 Neognathae_b ANCESTRAL SPECIES 102 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000153385.b.a.b.k.b #22 Neognathae_c ANCESTRAL SPECIES 67 ENSGT00940000163974 ENSGT00390000010806 ENSGT00940000160381.a #19 ENSGT00940000160381.b #19 ENSGT00940000153385.b.a.b.k.b #22 ENSGT00940000160997.b #9 ENSGT00950000183127.b.g.d.a Golden eagle MODERN SPECIES 55 DDR1 (ENSACCG00020015301) ENSACCG00020015333 ENSACCG00020015360 ENSACCG00020015378 ENSACCG00020015738 SH3BP5L (ENSACCG00020016019) ENSACCG00020016031 ENSACCG00020016038 ENSACCG00020016047 ENSACCG00020016062 GABBR1 (ENSACCG00020016080) RNF225 (ENSACCG00020016108) RPS5 (ENSACCG00020016126) ENSACCG00020016176 #19 ENSACCG00020016198 #19 BRD2 (ENSACCG00020016208) #22 ENSACCG00020016250 ENSACCG00020016292 #9 ENSACCG00020016313 #9 Passeriformes ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Passeroidea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.k.b #22 Zebra finch MODERN SPECIES 99 ENSTGUG00000026921 #26 ENSTGUG00000024504 #9 ENSTGUG00000019166 ENSTGUG00000027041 ENSTGUG00000029470 ENSTGUG00000027795 ENSTGUG00000023468 ENSTGUG00000023450 ENSTGUG00000022923 #22 ENSTGUG00000019830 #22 ENSTGUG00000021345 ENSTGUG00000025871 ENSTGUG00000026581 ENSTGUG00000014649 ENSTGUG00000024543 #11 ENSTGUG00000028050 ENSTGUG00000021420 #9 ENSTGUG00000019551 ENSTGUG00000021774 ENSTGUG00000023669 #26 ENSTGUG00000020363 #25 ENSTGUG00000020800 #28 ENSTGUG00000020633 #30 RPS18 (ENSTGUG00000025738) #31 Neognathae_b ANCESTRAL SPECIES 100 ENSGT00940000153385.b.a.b.l #22 ENSGT00950000183127.b.g.d.a ENSGT00940000155371 #11 Neognathae_c ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Kakapo MODERN SPECIES 73 EPOR (ENSSHBG00005017367) ECSIT (ENSSHBG00005017349) CNN1 (ENSSHBG00005017346) ELOF1 (ENSSHBG00005017342) ACP5 (ENSSHBG00005017284) NFIX (ENSSHBG00005017275) ENSSHBG00005017272 ENSSHBG00005017270 ENSSHBG00005017267 CALR (ENSSHBG00005017266) ENSSHBG00005017257 ENSSHBG00005017252 WIZ (ENSSHBG00005017243) AKAP8L (ENSSHBG00005017237) AKAP8 (ENSSHBG00005017232) ENSSHBG00005017222 #22 AP1M2 (ENSSHBG00005017216) ENSSHBG00005017213 ENSSHBG00005017208 ENSSHBG00005017200 ILF3 (ENSSHBG00005017188) ENSSHBG00005017181 QTRT1 (ENSSHBG00005017179) DNM2 (ENSSHBG00005017137) TYK2 (ENSSHBG00005017119) RAVER1 (ENSSHBG00005017112) FDX2 (ENSSHBG00005017107) ENSSHBG00005017102 AURKB (ENSSHBG00005017096) PRKCSH (ENSSHBG00005017090) COLGALT1 (ENSSHBG00005017082) Passeriformes ANCESTRAL SPECIES 136 ENSGT00940000153385.b.a.b.l #22 ENSGT00950000183127.b.g.d.a ENSGT00940000155371 #11 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Passeroidea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.l #22 Zebra finch MODERN SPECIES 99 ENSTGUG00000026921 #26 ENSTGUG00000024504 #9 ENSTGUG00000019166 ENSTGUG00000027041 ENSTGUG00000029470 ENSTGUG00000027795 ENSTGUG00000023468 ENSTGUG00000023450 ENSTGUG00000022923 #22 ENSTGUG00000019830 #22 ENSTGUG00000021345 ENSTGUG00000025871 ENSTGUG00000026581 ENSTGUG00000014649 ENSTGUG00000024543 #11 ENSTGUG00000028050 ENSTGUG00000021420 #9 ENSTGUG00000019551 ENSTGUG00000021774 ENSTGUG00000023669 #26 ENSTGUG00000020363 #25 ENSTGUG00000020800 #28 ENSTGUG00000020633 #30 RPS18 (ENSTGUG00000025738) #31 ENSTGUG00000024100 #33 African ostrich DUPLICATION African ostrich MODERN SPECIES 608 RASAL3 (ENSSCUG00000009490) ENSSCUG00000009479 AKAP8L (ENSSCUG00000009472) AKAP8 (ENSSCUG00000009464) ENSSCUG00000009460 #22 ENSSCUG00000009457 ENSSCUG00000009450 African ostrich MODERN SPECIES 1055 ENSSCUG00000019012 ENSSCUG00000019013 ENSSCUG00000019014 ENSSCUG00000019015 ENSSCUG00000019016 ENSSCUG00000019017 BRD2 (ENSSCUG00000019018) #22 HLA-DRA (ENSSCUG00000019019) #9 Cryptodira ANCESTRAL SPECIES 65 ENSGT01100000263517.b.d ENSGT00940000160499 #15 ENSGT00940000157293 #16 ENSGT00940000159023 #17 ENSGT00940000159897 #18 ENSGT01100000263517.a.a ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00950000183127.b.h.a.a ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000007075 #33 ENSGT00940000161798 #32 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 ENSGT00940000160991 #36 Testudinoidea ANCESTRAL SPECIES 54 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847.c.a.a ENSGT00950000183127.b.h.a.a.a.a ENSGT00950000183127.b.h.a.a.b ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000007075 #33 ENSGT00940000161798 #32 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES 218 ENSGT00940000160381.c #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b.o #22 Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 969 ENSTMTG00000013710 #22 Three-toed box turtle MODERN SPECIES 1146 ENSTMTG00000017990 #22 painted turtle MODERN SPECIES 1219 ENSCPBG00000006733 ENSCPBG00000008241 #15 PSMB8 (ENSCPBG00000008280) #16 ENSCPBG00000008292 #17 ENSCPBG00000008306 #18 ENSCPBG00000008318 #17 ENSCPBG00000008324 #15 ENSCPBG00000008354 HLA-DMB (ENSCPBG00000008368) #19 HLA-DMA (ENSCPBG00000008372) #21 BRD2 (ENSCPBG00000008380) #22 Emydidae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.p #22 Three-toed box turtle MODERN SPECIES 3192 ENSTMTG00000014495 #22 Testudinidae ANCESTRAL SPECIES 71 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847.c.a.a ENSGT00950000183127.b.h.a.a.a.a ENSGT00950000183127.b.h.a.a.b ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00390000008815 #30 ENSGT00390000012691.c.b #31 ENSGT00390000007075 #33 ENSGT00940000161798 #32 ENSGT00390000010512 #34 ENSGT00940000161403 #35 ENSGT00940000159200 #37 Goode s thornscrub tortoise MODERN SPECIES 170 ENSGEVG00005020797 PSMB9 (ENSGEVG00005020791) #18 TAP1 (ENSGEVG00005020786) #17 PSMB8 (ENSGEVG00005020780) #16 TAP2 (ENSGEVG00005020773) #15 ENSGEVG00005020695 ENSGEVG00005020518 ENSGEVG00005020457 ENSGEVG00005020451 #10 ENSGEVG00005020447 #9 ENSGEVG00005020442 ENSGEVG00005020430 ENSGEVG00005020423 ENSGEVG00005020421 #19 HLA-DMA (ENSGEVG00005020420) #21 BRD2 (ENSGEVG00005020418) #22 ENSGEVG00005020408 ENSGEVG00005020389 ENSGEVG00005020378 #9 ENSGEVG00005020372 ENSGEVG00005020366 ENSGEVG00005020362 #24 RXRB (ENSGEVG00005020358) #25 ENSGEVG00005020353 ENSGEVG00005020345 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 497 ENSCABG00000013514 #22 ENSCABG00000013592 ENSCABG00000013594 NOTCH3 (ENSCABG00000013600) ENSCABG00000013621 ENSCABG00000013622 XAB2 (ENSCABG00000013624) PET100 (ENSCABG00000013626) Abingdon island giant tortoise MODERN SPECIES 2003 ENSCABG00000015631 #21 BRD2 (ENSCABG00000015628) #22 ENSCABG00000015626 #9 ENSCABG00000015625 ENSCABG00000015624 UCN3 (ENSCABG00000015623) ENSCABG00000015622 ENSCABG00000015620 ENSCABG00000015619 ENSCABG00000015618 NET1 (ENSCABG00000015617) CALML3 (ENSCABG00000015605) ENSCABG00000015602 ASB13 (ENSCABG00000015601) TASOR2 (ENSCABG00000015600) GDI2 (ENSCABG00000015598) ANKRD16 (ENSCABG00000015596) Lepidosauria ANCESTRAL SPECIES 78 ENSGT00940000159130 ENSGT00950000183036.b ENSGT00940000161507 ENSGT00940000158718 ENSGT00940000161423 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000154549.b ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a ENSGT00940000156233 ENSGT00940000164497 ENSGT00940000160234 ENSGT00980000198723 ENSGT00950000182975.a.b ENSGT00550000075140 ENSGT00390000016884 ENSGT00940000162025 ENSGT00940000160045 ENSGT00390000016177 ENSGT00940000157017.b ENSGT00940000162906.c.a ENSGT00390000000976 ENSGT00390000018759 tuatara MODERN SPECIES 208 ENSSPUG00000006464 #21 BRD2 (ENSSPUG00000006441) #22 Episquamata ANCESTRAL SPECIES 4 ENSGT00940000156854 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00730000111191 ENSGT00390000005730.a.a.f ENSGT00940000161207 ENSGT00940000170754 ENSGT00940000157510 ENSGT00940000155709 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000154549.b ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a ENSGT00940000156233 ENSGT00940000164497 ENSGT00940000160234 ENSGT00980000198723 ENSGT00950000182975.a.b ENSGT00550000075140 ENSGT00390000016884 ENSGT00940000162025 ENSGT00940000160045 ENSGT00390000016177.a.a ENSGT00940000157017.b ENSGT00390000000976 ENSGT00390000018759 ENSGT00950000182886.a.a.b Toxicofera ANCESTRAL SPECIES 97 ENSGT00940000159897 #18 ENSGT00940000159023 #17 ENSGT00940000157293 #16 ENSGT00940000160499 #15 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a Lizard DUPLICATION Lizard MODERN SPECIES 1667 ENSACAG00000004190 #22 ENSACAG00000044573 #22 ENSACAG00000004292 #34 ENSACAG00000038023 Lizard MODERN SPECIES 1667 ENSACAG00000004190 #22 ENSACAG00000044573 #22 ENSACAG00000004292 #34 ENSACAG00000038023 Elapidae ANCESTRAL SPECIES 118 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162790.a Elapidae_a ANCESTRAL SPECIES 289 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 Acanthophiinae ANCESTRAL SPECIES 272 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 Mainland tiger snake MODERN SPECIES 998 ENSNSUG00000009725 #21 BRD2 (ENSNSUG00000009724) #22 Eastern brown snake MODERN SPECIES 380 RXRB (ENSPTXG00000016800) #25 BRD2 (ENSPTXG00000016797) #22 Blue-lipped sea krait MODERN SPECIES 4206 ENSLLTG00000013032 #21 BRD2 (ENSLLTG00000013038) #22 Indian cobra DUPLICATION Indian cobra MODERN SPECIES 1 NDEL1 (ENSNNAG00000011630) RNF222 (ENSNNAG00000011593) ENSNNAG00000011582 PIRT (ENSNNAG00000011571) ENSNNAG00000011452 ENSNNAG00000011427 ENSNNAG00000011391 ELAC2 (ENSNNAG00000011075) FN3KRP (ENSNNAG00000010997) RAB40B (ENSNNAG00000010973) WDR45B (ENSNNAG00000010923) FOXK2 (ENSNNAG00000010859) WIZ (ENSNNAG00000010721) AKAP8L (ENSNNAG00000010673) AKAP8 (ENSNNAG00000010662) ENSNNAG00000010572 #22 ENSNNAG00000010557 ENSNNAG00000010532 ENSNNAG00000010481 ENSNNAG00000010419 ENSNNAG00000010384 STXBP2 (ENSNNAG00000010318) ENSNNAG00000010285 ENSNNAG00000010233 ENSNNAG00000010221 ENSNNAG00000010194 ENSNNAG00000010159 ENSNNAG00000010093 TRAPPC5 (ENSNNAG00000010073) NDUFB7 (ENSNNAG00000010053) TECR (ENSNNAG00000009971) Indian cobra MODERN SPECIES 1 ENSNNAG00000001342 ENSNNAG00000001323 ENSNNAG00000001305 ENSNNAG00000001279 ENSNNAG00000001259 ENSNNAG00000001252 ENSNNAG00000001229 ENSNNAG00000001217 ENSNNAG00000000800 ENSNNAG00000000714 ENSNNAG00000000697 ENSNNAG00000000471 ENSNNAG00000000357 ENSNNAG00000000325 HLA-DMA (ENSNNAG00000000283) #21 BRD2 (ENSNNAG00000002715) #22 ENSNNAG00000002706 ENSNNAG00000002701 #32 ENSNNAG00000002691 ENSNNAG00000002685 ENSNNAG00000002675 ENSNNAG00000002670 ENSNNAG00000002663 ENSNNAG00000002646 ENSNNAG00000002635 ENSNNAG00000002631 ENSNNAG00000002624 ENSNNAG00000002619 #32 WDR46 (ENSNNAG00000002604) #33 TAPBP (ENSNNAG00000002593) #37 ENSNNAG00000002588 #36 Laterata ANCESTRAL SPECIES 76 ENSGT00390000012691.c.b #31 ENSGT00390000008815 #30 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00940000160076 #26 ENSGT00940000160668 #27 ENSGT00940000161022 #28 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00950000183127.b.h.b.a.a Argentine black and white tegu MODERN SPECIES 162 ENSSMRG00000003732 ENSSMRG00000003731 ENSSMRG00000003728 #34 ENSSMRG00000003724 ENSSMRG00000003712 #31 VPS52 (ENSSMRG00000003699) #30 ENSSMRG00000003692 ENSSMRG00000003688 #24 RXRB (ENSSMRG00000003679) #25 SLC39A7 (ENSSMRG00000003675) #26 HSD17B8 (ENSSMRG00000003673) #27 RING1 (ENSSMRG00000003666) #28 HLA-DMB (ENSSMRG00000003665) #19 HLA-DMA (ENSSMRG00000003662) #21 BRD2 (ENSSMRG00000003659) #22 ENSSMRG00000003656 ENSSMRG00000003653 ENSSMRG00000003651 ENSSMRG00000003650 ENSSMRG00000003619 ENSSMRG00000003605 ENSSMRG00000003492 ENSSMRG00000003482 ENSSMRG00000003477 ENSSMRG00000003468 #10 ENSSMRG00000003461 ENSSMRG00000003458 ENSSMRG00000003450 ENSSMRG00000003440 ENSSMRG00000003437 Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 10 TMEM238L (ENSPMRG00000015839) ENSPMRG00000015865 PIRT (ENSPMRG00000015871) ENSPMRG00000015879 ENSPMRG00000015887 ENSPMRG00000016255 ELAC2 (ENSPMRG00000017772) ENSPMRG00000018175 FN3KRP (ENSPMRG00000018180) RAB40B (ENSPMRG00000018194) WDR45B (ENSPMRG00000018202) FOXK2 (ENSPMRG00000018210) WIZ (ENSPMRG00000018220) AKAP8L (ENSPMRG00000018229) AKAP8 (ENSPMRG00000018235) ENSPMRG00000018243 #22 ENSPMRG00000018269 ENSPMRG00000018332 ENSPMRG00000018342 NOTCH3 (ENSPMRG00000018759) CAMSAP3 (ENSPMRG00000021035) XAB2 (ENSPMRG00000021050) ENSPMRG00000021066 PCP2 (ENSPMRG00000021070) STXBP2 (ENSPMRG00000021082) ENSPMRG00000021107 ENSPMRG00000021116 ENSPMRG00000021125 ENSPMRG00000021134 TRAPPC5 (ENSPMRG00000021136) ENSPMRG00000021143 Common wall lizard MODERN SPECIES 10 ENSPMRG00000001602 ENSPMRG00000001577 ENSPMRG00000001553 ENSPMRG00000001536 RPS18 (ENSPMRG00000001512) ##31 VPS52 (ENSPMRG00000001358) #30 ENSPMRG00000001300 #24 ENSPMRG00000001290 #24 RXRB (ENSPMRG00000001268) #25 SLC39A7 (ENSPMRG00000001206) #26 HSD17B8 (ENSPMRG00000001176) #27 ENSPMRG00000001168 RING1 (ENSPMRG00000001157) #28 HLA-DMB (ENSPMRG00000001134) #19 ENSPMRG00000001116 #21 BRD2 (ENSPMRG00000001062) #22 ENSPMRG00000001024 ENSPMRG00000001014 ENSPMRG00000000998 ENSPMRG00000000989 ENSPMRG00000000964 ENSPMRG00000000946 ENSPMRG00000000925 ENSPMRG00000000909 ENSPMRG00000000899 ENSPMRG00000000878 ENSPMRG00000000845 ENSPMRG00000000821 ENSPMRG00000000769 ENSPMRG00000000727 ENSPMRG00000000707 #13 Anura ANCESTRAL SPECIES 33 ENSGT01100000263514.B ENSGT00940000161047 ENSGT00940000155739 ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00940000160293 ENSGT00940000175842 ENSGT00940000155431.b ENSGT00940000159023 #17 ENSGT00940000157293.rb #16 ENSGT00940000159897 #18 ENSGT00940000157293.sb #16 ENSGT00940000160381 #19 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000161847 ENSGT00950000183127.a.a ENSGT00950000183127.b ENSGT00940000159762.pb #24 ENSGT00940000159208.B #25 ENSGT00940000164565 ENSGT00390000009448 ENSGT00940000160991 #36 ENSGT00940000159200 #37 ENSGT00390000010512 #34 ENSGT00940000161798 #32 ENSGT00390000007075 #33 ENSGT00390000012691.d ##31 ENSGT00390000008815 #30 ENSGT00940000161022 #28 Leishan spiny toad MODERN SPECIES 12 ENSLLEG00000017795 ENSLLEG00000017898 ENSLLEG00000017953 ENSLLEG00000018030 ENSLLEG00000018106 ENSLLEG00000018208 ENSLLEG00000018274 ENSLLEG00000019270 #17 ENSLLEG00000020110 ENSLLEG00000020943 #16 ENSLLEG00000021029 #18 ENSLLEG00000021099 ENSLLEG00000021133 #19 ENSLLEG00000021209 #19 HLA-DMA (ENSLLEG00000021329) #21 BRD2 (ENSLLEG00000021438) #22 ENSLLEG00000021555 ENSLLEG00000021644 ENSLLEG00000021989 ENSLLEG00000022079 #24 ENSLLEG00000022230 #24 RXRB (ENSLLEG00000022477) #25 ENSLLEG00000022945 PFDN6 (ENSLLEG00000023220) #34 B3GALT4 (ENSLLEG00000023322) #32 WDR46 (ENSLLEG00000023371) #33 ENSLLEG00000024002 ##31 VPS52 (ENSLLEG00000024171) #30 RING1 (ENSLLEG00000024306) #28 HSD17B8 (ENSLLEG00000024356) #27 ENSLLEG00000024412 Frog DUPLICATION Frog MODERN SPECIES 4 hs2st1 (ENSXETG00000013450) lmo4.1 (ENSXETG00000023295) pkn2 (ENSXETG00000006092) gtf2b (ENSXETG00000006091) kyat3 (ENSXETG00000006090) LRRC8B (ENSXETG00000025190) lrrc8c (ENSXETG00000006089) lrrc8d (ENSXETG00000006088) ENSXETG00000046193 znf326 (ENSXETG00000006087) barhl2 (ENSXETG00000023986) znf644 (ENSXETG00000023985) hfm1 (ENSXETG00000029954) cdc7 (ENSXETG00000023034) tgfbr3 (ENSXETG00000023030) brdt (ENSXETG00000008571) #22 ephx4 (ENSXETG00000023020) btbd8 (ENSXETG00000023013) C1orf146 (ENSXETG00000035474) ENSXETG00000047613 glmn (ENSXETG00000023009) rpap2 (ENSXETG00000023007) gfi1 (ENSXETG00000023006) evi5 (ENSXETG00000023005) rpl5 (ENSXETG00000023004) XB964897 [provisional:lrrc8c] (ENSXETG00000023003) dipk1a (ENSXETG00000023002) mtf2 (ENSXETG00000023001) tmed5 (ENSXETG00000023000) ccdc18 (ENSXETG00000022999) XB1000829 [provisional] (ENSXETG00000022991) Frog MODERN SPECIES 8 rnf5 (ENSXETG00000027728) pbx2 (ENSXETG00000005223) ENSXETG00000035802 ENSXETG00000042143 notch4 (ENSXETG00000031777) ENSXETG00000043963 ENSXETG00000035563 #17 ENSXETG00000049057 #16 psmb9 (ENSXETG00000026029) #18 ENSXETG00000048187 ENSXETG00000046177 ENSXETG00000043651 hla-a (ENSXETG00000017065) HLA-DMB (ENSXETG00000034043) #19 mhc2a (ENSXETG00000017066) #21 brd2 (ENSXETG00000017067) #22 hla-dqa1 (ENSXETG00000047702) ENSXETG00000044382 ENSXETG00000047770 ENSXETG00000044487 ENSXETG00000045519 ENSXETG00000047473 XB5827395 [provisional] (ENSXETG00000025586) col11a2p1 (ENSXETG00000012724) #24 rxrb (ENSXETG00000040714) #25 MGC147402 (ENSXETG00000031644) kifc1 (ENSXETG00000020409) daxx (ENSXETG00000020372) zbtb22 (ENSXETG00000044063) #36 tapbp (ENSXETG00000020402) #37 rgl2 (ENSXETG00000020405) Coelacanth MODERN SPECIES 875 BRD2 (ENSLACG00000014457) #22 PSMB9 (ENSLACG00000014279) #18 ENSLACG00000014125 #17 PSMB8 (ENSLACG00000014047) #16 tap2a (ENSLACG00000013948) ENSLACG00000013487 ENSLACG00000013193 ENSLACG00000012848 HSD17B8 (ENSLACG00000012715) #27 VPS52 (ENSLACG00000012474) #30 ENSLACG00000012423 RING1 (ENSLACG00000012343) #28 ENSLACG00000012273 ENSLACG00000011364 ENSLACG00000011010 RPS18 (ENSLACG00000010919) #31 Actinopterygii ANCESTRAL SPECIES 338 ENSGT00940000155431.b ENSGT00940000159023 #17 ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 ENSGT00940000159208.B #25 ENSGT00920000149187 ENSGT00940000160798 ENSGT00390000008815 #30 ENSGT00390000012691 #31 Reedfish MODERN SPECIES 490 psmb9a (ENSECRG00000013994) #18 psmb8a (ENSECRG00000014016) #16 ENSECRG00000014037 #17 ENSECRG00000014155 ENSECRG00000014507 ENSECRG00000014638 ENSECRG00000014855 ENSECRG00000014893 ENSECRG00000014922 ENSECRG00000014956 #22 ENSECRG00000015028 ENSECRG00000015046 ENSECRG00000015062 ENSECRG00000015097 ENSECRG00000015161 ENSECRG00000015180 ENSECRG00000015235 ENSECRG00000015274 ENSECRG00000015418 Neopterygii ANCESTRAL SPECIES 356 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT01100000263475.g ENSGT01100000263531.G ENSGT00940000157293 #16 ENSGT00940000159897 #18 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #24 Osteoglossocephalai ANCESTRAL SPECIES 68 ENSGT01060000248594.e.b.a ENSGT00940000155313.g.b ENSGT00940000155739 ENSGT00940000158338 ENSGT00940000160991.b #36 ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000012691 #31 ENSGT00390000008815 #30 ENSGT01030000234974 ENSGT00940000160798 ENSGT00940000155188.A ENSGT00940000155565.b ENSGT00940000161047 ENSGT01100000263514.B Osteoglossiformes ANCESTRAL SPECIES 9 ENSGT01030000234534.B.a.a.b.c ENSGT00940000160567.o ENSGT00940000161280 ENSGT00940000158438.m ENSGT00950000183180.a.b.k ENSGT00940000160991.b #36 ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000012691 #31 ENSGT00390000008815 #30 ENSGT01030000234974 ENSGT00940000160798 ENSGT00940000155188.A.e.a ENSGT00940000155565.b ENSGT00940000161047 ENSGT01100000263514.B ENSGT00940000165771 ENSGT01100000263531.A P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 65 ENSPKIG00000009597 rbm8a (ENSPKIG00000009551) afp4 (ENSPKIG00000009538) ntrk1 (ENSPKIG00000009512) PAQR6 (ENSPKIG00000009491) smg5 (ENSPKIG00000009402) SYNGAP1 (ENSPKIG00000009301) PHF1 (ENSPKIG00000009103) rgl2 (ENSPKIG00000008901) dnase2 (ENSPKIG00000008826) ENSPKIG00000008802 pbx2 (ENSPKIG00000008747) ENSPKIG00000008714 TAP1 (ENSPKIG00000008682) #17 ENSPKIG00000008666 BRD2 (ENSPKIG00000008636) #22 ENSPKIG00000008618 P. kingsleyae MODERN SPECIES 528 ENSPKIG00000019207 #29 ENSPKIG00000019237 psmb8a (ENSPKIG00000019279) #16 psmb13a (ENSPKIG00000019313) psmb12 (ENSPKIG00000019337) psmb9a (ENSPKIG00000019363) #18 tap2a (ENSPKIG00000019664) tap2a (ENSPKIG00000019984) BRD2 (ENSPKIG00000020022) #22 hsd17b8 (ENSPKIG00000020097) #27 col11a2 (ENSPKIG00000020188) #24 rxrba (ENSPKIG00000020343) ##25 slc39a7 (ENSPKIG00000020415) #26 rps18 (ENSPKIG00000020447) #31 VPS52 (ENSPKIG00000020503) #30 Asian bonytongue MODERN SPECIES 15 SYNGAP1 (ENSSFOG00015009582) ENSSFOG00015009653 ENSSFOG00015030652 #36 kifc1 (ENSSFOG00015009879) zbtb22b (ENSSFOG00015009905) #36 daxx (ENSSFOG00015009918) ENSSFOG00015009924 #37 ENSSFOG00015010134 ENSSFOG00015011573 psmb8a (ENSSFOG00015015709) #16 psmb13a (ENSSFOG00015015744) psmb12 (ENSSFOG00015015893) psmb9a (ENSSFOG00015016116) #18 tap2a (ENSSFOG00015018890) tap2a (ENSSFOG00015018809) brd2a (ENSSFOG00015018750) #22 hsd17b8 (ENSSFOG00015026013) #27 ENSSFOG00015026562 rxrba (ENSSFOG00015032211) ##25 slc39a7 (ENSSFOG00015018484) #26 RING1 (ENSSFOG00015018475) #28 rps18 (ENSSFOG00015018455) #31 VPS52 (ENSSFOG00015018408) #30 ENSSFOG00015018393 ENSSFOG00015018313 ENSSFOG00015026771 ENSSFOG00015018269 psmb10 (ENSSFOG00015018237) selenoh (ENSSFOG00015018225) ENSSFOG00015018219 ENSSFOG00015017767 Clupeocephala DUPLICATION Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 52 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000012691 #31 ENSGT00390000008815 #30 ENSGT01030000234974 ENSGT00940000160798 ENSGT00940000155188.A ENSGT00940000155565.b ENSGT00940000161047 Otomorpha ANCESTRAL SPECIES 208 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.a.f ENSGT00940000156904.a.a ENSGT00940000164565 ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00910000144277 Otophysi ANCESTRAL SPECIES 207 ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.a.f ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b.db ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00910000144277 Cyprinoidei ANCESTRAL SPECIES 35 ENSGT00940000165364.a.b.f ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.a.f ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.q.b.b.a ENSGT00940000157293 #16 ENSGT00940000165504.x ENSGT00940000165375.z ENSGT00940000159897 #18 ENSGT00940000155431.b.db ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A.b ##25 ENSGT00980000199868 ENSGT00940000159208.A.a ##25 ENSGT00910000144277 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 55 ENSGT00940000156904.a.a.a ENSGT00940000173076 ENSGT00560000077232.A.a.f.a ENSGT00940000156904.a.a.b ENSGT00940000161735.c ENSGT00940000160991.a.a #36 ENSGT00390000009448.b ENSGT00940000159200 #37 ENSGT01100000263531.G.q.b.b.a.b.a.a ENSGT01100000263531.G.q.b.b.a.b.b ENSGT00940000157293.gb.a #16 ENSGT00940000165504.x ENSGT00940000165375.z.a ENSGT00940000159897 #18 ENSGT00940000155431.b.db.f ENSGT00940000153385.b.a.b.fd.a.a #22 ENSGT00940000160668 #27 ENSGT00940000159762.e.b #24 ENSGT00940000159208.A.a.a ##25 ENSGT00940000155488.m.a ENSGT00940000157880.g.b.c ENSGT00390000012690.b.f ENSGT00940000155721.b.a.b ENSGT00940000159459.db.b ENSGT00940000160576.l ENSGT00390000014107.a.b.ab ENSGT01100000263531.A.j.a ENSGT00940000160042.a.a ENSGT00940000154491.c.a.b.b ENSGT00390000014944.b.a ENSGT00950000183081.b.i.b.c Goldfish MODERN SPECIES 38 atp1a3a (ENSCARG00000031651) pvrl2l (ENSCARG00000033892) ENSCARG00000033944 FLOT1 (ENSCARG00000033983) znf384a (ENSCARG00000034182) kifc1 (ENSCARG00000034230) zbtb22b (ENSCARG00000034333) #36 daxx (ENSCARG00000034348) ENSCARG00000034393 #37 ENSCARG00000034474 ENSCARG00000034484 psmb8a (ENSCARG00000034496) #16 psmb13a (ENSCARG00000034534) psmb12 (ENSCARG00000034724) psmb9a (ENSCARG00000034741) #18 brd2a (ENSCARG00000034766) #22 hsd17b8 (ENSCARG00000034802) #27 rxrba (ENSCARG00000035079) ##25 sdha (ENSCARG00000035216) ccdc127b (ENSCARG00000035345) ccdc127b (ENSCARG00000035352) STT3B (ENSCARG00000035361) OSBPL10 (ENSCARG00000035399) ENSCARG00000035407 zdhhc3b (ENSCARG00000035408) ENSCARG00000035411 slc44a4 (ENSCARG00000035433) RNF5 (ENSCARG00000035873) ENSCARG00000035894 ENSCARG00000035914 ENSCARG00000035922 Cyprininae_a ANCESTRAL SPECIES 80 ENSGT00940000160115.a.b.c.a ENSGT00940000165134.a.a.b ENSGT00940000165364.a.b.f ENSGT00390000015391.a ENSGT00560000077232.A.a.f.a ENSGT00940000156904.a.a.b ENSGT00940000161735.c ENSGT00940000160991.a.a #36 ENSGT00390000009448.b ENSGT01100000263531.G.q.b.b.a.b.b ENSGT00940000157293.gb.a #16 ENSGT00940000165504.x ENSGT00940000165375.z.a ENSGT00940000159897.mb #18 ENSGT00940000155431.b.db.f ENSGT00940000153385.b.a.b.fd.a.a #22 ENSGT00940000160668 #27 ENSGT00940000159762.e.b #24 ENSGT00940000159208.A.a.a ##25 ENSGT00910000144277.g ENSGT00390000008818.q.a ENSGT00940000155488.m.a ENSGT00940000157880.g.b.c ENSGT00390000012690.b.f ENSGT00940000155721.b.a.b ENSGT00940000159459.db.b ENSGT00940000160576.l ENSGT00390000014107.a.b.ab ENSGT01100000263531.A.j.a ENSGT00940000160042.a.a ENSGT00940000154491.c.a.b.b Common carp reference MODERN SPECIES 31 atp1a3a (ENSCCRG00000069604) pvrl2l (ENSCCRG00000072848) ENSCCRG00000062427 ENSCCRG00000069789 znf384a (ENSCCRG00000063145) kifc1 (ENSCCRG00000078565) zbtb22b (ENSCCRG00000077449) #36 daxx (ENSCCRG00000006291) ENSCCRG00000057768 #37 ENSCCRG00000074580 psmb8a (ENSCCRG00000081832) #16 psmb13a (ENSCCRG00000007024) psmb12 (ENSCCRG00000007019) psmb9a (ENSCCRG00000006981) #18 tap2a (ENSCCRG00000020751) brd2a (ENSCCRG00000037698) #22 hsd17b8 (ENSCCRG00000077306) #27 col11a2 (ENSCCRG00000003106) #24 rxrba (ENSCCRG00000002913) ##25 sdha (ENSCCRG00000057684) ccdc127b (ENSCCRG00000043580) ENSCCRG00000028130 ENSCCRG00000003494 zdhhc3b (ENSCCRG00000077917) ENSCCRG00000060366 ehmt2 (ENSCCRG00000006702) ENSCCRG00000067978 ENSCCRG00000052800 slc44a4 (ENSCCRG00000031086) ENSCCRG00000021130 scrt1a (ENSCCRG00000079030) Golden-line barbel MODERN SPECIES 1085 psmb13a (ENSSGRG00000028579) psmb12 (ENSSGRG00000028577) PSMB9 (ENSSGRG00000028575) #18 tap2a (ENSSGRG00000028394) brd2a (ENSSGRG00000028388) #22 col11a2 (ENSSGRG00000028289) #24 rxrba (ENSSGRG00000028029) ##25 sdha (ENSSGRG00000027446) ccdc127b (ENSSGRG00000027434) STT3B (ENSSGRG00000027427) OSBPL10 (ENSSGRG00000027422) zdhhc3b (ENSSGRG00000027420) ehmt2 (ENSSGRG00000027005) slc44a4 (ENSSGRG00000026991) RNF5 (ENSSGRG00000026989) ENSSGRG00000026988 slc39a4 (ENSSGRG00000026987) scrt1a (ENSSGRG00000026986) zgc:63863 (ENSSGRG00000026985) dgat1a (ENSSGRG00000026984) Cyprininae ANCESTRAL SPECIES 572 ENSGT00940000155431.b.db.e ENSGT00940000153385.b.a.b.fd.a.b #22 ENSGT00950000183127.c.a ENSGT00940000159762.e.a #24 ENSGT00940000159208.A.a.b ##25 ENSGT00910000144277.h ENSGT00390000008818.q.b.a.b ENSGT00940000157880.g.b.d ENSGT00390000012690.b.e ENSGT00940000155721.b.a.a ENSGT00940000159459.db.a ENSGT00940000160576.k ENSGT00390000014107.a.b.`b ENSGT00940000160042.a.b ENSGT00940000154491.c.a.b.a ENSGT00390000014944.b.b ENSGT00950000183081.b.i.b.d Cyprininae_a ANCESTRAL SPECIES 43 ENSGT00390000005284.a ENSGT00560000077232.A.a.f.b ENSGT00940000156904.a.a.a ENSGT00940000173076 ENSGT00940000161735.d ENSGT00940000160991.a.b #36 ENSGT00390000009448.a ENSGT01100000263531.G.q.a ENSGT01100000263531.G.q.b.a.a.b ENSGT00940000159200.z #37 ENSGT01100000263531.G.q.b.b.a.a ENSGT00940000155431.b.eb ENSGT00940000159897.lb.a #18 ENSGT00940000165504.w ENSGT00940000157293.fb #16 ENSGT00940000153385.b.a.b.fd.a.b #22 ENSGT00950000183127.c.a ENSGT00940000159762.e.a #24 ENSGT00940000159208.A.a.b ##25 ENSGT00910000144277.h ENSGT00390000008818.q.b.a.a ENSGT00940000157880.g.b.d ENSGT00390000012690.b.e ENSGT00940000155721.b.a.a ENSGT00940000159459.db.a ENSGT00940000180503.a ENSGT00940000160576.k ENSGT00390000014107.a.b.`b ENSGT00940000160042.a.b ENSGT00940000154491.c.a.b.a ENSGT00390000014944.b.b Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 2426 brd2a (ENSSGRG00000010128) #22 ENSSGRG00000009698 hsd17b8 (ENSSGRG00000009637) #27 Golden-line barbel MODERN SPECIES 2849 ENSSGRG00000003534 #22 Common carp reference MODERN SPECIES 12 daxx (ENSCCRG00000015214) ENSCCRG00000040017 ENSCCRG00000037550 ENSCCRG00000064806 ENSCCRG00000048685 ENSCCRG00000014588 #37 ENSCCRG00000069025 ENSCCRG00000072071 #18 psmb8a (ENSCCRG00000073309) #16 tap2a (ENSCCRG00000029246) ENSCCRG00000078468 ENSCCRG00000046942 ENSCCRG00000069493 ENSCCRG00000072333 ENSCCRG00000055565 #16 brd2a (ENSCCRG00000080365) #22 ENSCCRG00000003637 col11a2 (ENSCCRG00000003584) #24 rxrba (ENSCCRG00000064707) ##25 sdha (ENSCCRG00000062819) ccdc127b (ENSCCRG00000075932) ENSCCRG00000053849 ENSCCRG00000003486 zdhhc3b (ENSCCRG00000076166) ehmt2 (ENSCCRG00000003434) ENSCCRG00000067561 slc44a4 (ENSCCRG00000020394) ENSCCRG00000066627 ENSCCRG00000057921 ENSCCRG00000054779 ENSCCRG00000021214 Goldfish DUPLICATION Goldfish MODERN SPECIES 1872 ENSCARG00000033910 psmb8a (ENSCARG00000033923) #16 tap2a (ENSCARG00000033991) brd2a (ENSCARG00000034476) #22 ENSCARG00000034546 Goldfish MODERN SPECIES 10 zc3h12ab (ENSCARG00000013835) LSM10 (ENSCARG00000013829) eva1bb (ENSCARG00000013820) thrap3b (ENSCARG00000013814) map7d1b (ENSCARG00000013800) stpg1 (ENSCARG00000013790) ENSCARG00000013783 ENSCARG00000013777 meaf6 (ENSCARG00000013724) ENSCARG00000013630 ENSCARG00000013613 ehmt2 (ENSCARG00000007556) zdhhc3b (ENSCARG00000007261) ENSCARG00000007227 tap2a (ENSCARG00000005599) brd2a (ENSCARG00000005514) #22 ENSCARG00000005471 col11a2 (ENSCARG00000005224) #24 rxrba (ENSCARG00000004767) ##25 sdha (ENSCARG00000003802) ccdc127b (ENSCARG00000003743) OSBPL10 (ENSCARG00000003706) ENSCARG00000003680 zdhhc3b (ENSCARG00000003674) zdhhc3b (ENSCARG00000003667) ehmt2 (ENSCARG00000002647) ENSCARG00000002570 slc44a4 (ENSCARG00000002408) RNF5 (ENSCARG00000002320) ENSCARG00000002308 ENSCARG00000002296 Zebrafish MODERN SPECIES 10 ENSDARG00000089953 FLOT1 (ENSDARG00000001710) znf384a (ENSDARG00000001015) kifc1 (ENSDARG00000001558) zbtb22b (ENSDARG00000003251) #36 daxx (ENSDARG00000000729) ENSDARG00000079402 #37 ENSDARG00000092731 tapbp.2 (ENSDARG00000045011) #37 mhc1uba (ENSDARG00000075963) psmb8a (ENSDARG00000001303) #16 psmb13a (ENSDARG00000001656) psmb12 (ENSDARG00000031885) psmb9a (ENSDARG00000000656) #18 tap2a (ENSDARG00000036787) brd2a (ENSDARG00000022280) #22 hsd17b8 (ENSDARG00000001169) #27 col11a2 (ENSDARG00000012422) #24 ENSDARG00000109804 rxrba (ENSDARG00000078954) ##25 sdha (ENSDARG00000016721) ccdc127b (ENSDARG00000008946) SQLE (ENSDARG00000063319) oxr1b (ENSDARG00000063310) naxe (ENSDARG00000058806) rab25a (ENSDARG00000058800) sf3b4 (ENSDARG00000018574) gabpb2a (ENSDARG00000007943) mllt11 (ENSDARG00000071026) mindy1 (ENSDARG00000004866) ENSDARG00000063258 Characiphysae ANCESTRAL SPECIES 151 ENSGT00940000157292.fc.a ENSGT00940000160115.a.b ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.a.f ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000155431.b.db ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00910000144277 Characiphysae_b ANCESTRAL SPECIES 61 ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.a.f ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b.db ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00910000144277 Characoidei ANCESTRAL SPECIES 82 ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.a.f ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b.db ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00910000144277 Red-bellied piranha MODERN SPECIES 141 atp1a3a (ENSPNAG00000010322) ENSPNAG00000010342 pvrl2l (ENSPNAG00000010374) ENSPNAG00000010402 ENSPNAG00000010440 FLOT1 (ENSPNAG00000010516) znf384a (ENSPNAG00000010552) kifc1 (ENSPNAG00000010590) zbtb22b (ENSPNAG00000010602) #36 daxx (ENSPNAG00000010609) ENSPNAG00000010653 #37 psmb8a (ENSPNAG00000010671) #16 psmb13a (ENSPNAG00000001427) psmb12 (ENSPNAG00000010717) psmb9a (ENSPNAG00000010735) #18 brd2a (ENSPNAG00000011082) #22 ENSPNAG00000001541 hsd17b8 (ENSPNAG00000011157) #27 col11a2 (ENSPNAG00000001681) #24 ENSPNAG00000001691 rxrba (ENSPNAG00000001719) ##25 sdha (ENSPNAG00000001724) ddx47 (ENSPNAG00000011435) ENSPNAG00000001755 ENSPNAG00000011493 ENSPNAG00000001763 ENSPNAG00000011507 ctdp1 (ENSPNAG00000001776) Mexicana tetra MODERN SPECIES 15 ENSAMXG00000032097 ENSAMXG00000029739 FLOT1 (ENSAMXG00000014240) znf384a (ENSAMXG00000035967) ENSAMXG00000014212 zbtb22b (ENSAMXG00000034704) #36 ENSAMXG00000033848 daxx (ENSAMXG00000014180) ENSAMXG00000014158 #37 psmb8a (ENSAMXG00000014118) #16 psmb13a (ENSAMXG00000014076) psmb12 (ENSAMXG00000014107) psmb9a (ENSAMXG00000014090) #18 tap2a (ENSAMXG00000014061) tap2a (ENSAMXG00000032662) brd2a (ENSAMXG00000014032) #22 hsd17b8 (ENSAMXG00000032734) #27 col11a2 (ENSAMXG00000013902) #24 rxrba (ENSAMXG00000019720) ##25 sdha (ENSAMXG00000013857) ctdp1 (ENSAMXG00000013841) ENSAMXG00000041095 SLC66A2 (ENSAMXG00000034877) srsf4 (ENSAMXG00000034811) ENSAMXG00000026321 EPB41 (ENSAMXG00000013797) ccn2b (ENSAMXG00000013786) STX12 (ENSAMXG00000041390) trnau1apa (ENSAMXG00000013750) sh3bgrl3 (ENSAMXG00000040190) paqr7a (ENSAMXG00000026320) Electric eel MODERN SPECIES 1051 brd2a (ENSEEEG00000016220) #22 hsd17b8 (ENSEEEG00000016219) #27 col11a2 (ENSEEEG00000016153) #24 Clupeiformes ANCESTRAL SPECIES 15 ENSGT00390000008161.a.b ENSGT00390000015984 ENSGT00940000158117 ENSGT00390000016823 ENSGT00940000163960.a ENSGT00390000010887.b ENSGT00940000166692 ENSGT00940000157740 ENSGT00940000154798.b ENSGT00530000063426.b.a ENSGT00940000164552 ENSGT00390000011115 ENSGT00390000008551 ENSGT00940000163648.b ENSGT00940000158729 ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00910000144277 ENSGT00390000008818 ENSGT00940000155187.B ENSGT00950000182893.a.a.a.b.d ENSGT00940000153769.F.m ENSGT00940000155778.A ENSGT00940000156034.b ENSGT00940000155167.b.a.b ENSGT00940000155112.B.b ENSGT00950000183108.a.d ENSGT00950000183156.a.b.b.b.b.a.c.b ENSGT00390000005809 Atlantic herring MODERN SPECIES 10 sdc2 (ENSCHAG00000001962) tpmt.1 (ENSCHAG00000001995) ENSCHAG00000002052 zgc:114119 (ENSCHAG00000002128) ENSCHAG00000002145 anxa14 (ENSCHAG00000002163) ENSCHAG00000002211 SQLE (ENSCHAG00000002382) ENSCHAG00000003838 ENSCHAG00000004037 ENSCHAG00000005305 cdca8 (ENSCHAG00000005628) c19h1orf109 (ENSCHAG00000005642) ENSCHAG00000005657 ago4 (ENSCHAG00000005849) brd2a (ENSCHAG00000011771) #22 hsd17b8 (ENSCHAG00000011805) #27 col11a2 (ENSCHAG00000011880) #24 ENSCHAG00000012417 rxrba (ENSCHAG00000012452) ##25 sdha (ENSCHAG00000013358) ccdc127b (ENSCHAG00000014626) ENSCHAG00000014639 ccdc127b (ENSCHAG00000014681) ccdc127b (ENSCHAG00000014709) oxr1b (ENSCHAG00000014759) ZHX2 (ENSCHAG00000015899) COL14A1 (ENSCHAG00000015921) ENPP2 (ENSCHAG00000016944) ENSCHAG00000020642 ENSCHAG00000022230 Denticle herring MODERN SPECIES 12 sdc2 (ENSDCDG00000034626) ENSDCDG00000034630 tpmt.1 (ENSDCDG00000034634) ENSDCDG00000034639 zgc:114119 (ENSDCDG00000034645) anxa14 (ENSDCDG00000034650) ENSDCDG00000034660 ENSDCDG00000034673 ENSDCDG00000034693 ENSDCDG00000034716 ENSDCDG00000034717 cdca8 (ENSDCDG00000034722) c19h1orf109 (ENSDCDG00000034725) ENSDCDG00000034726 ago4 (ENSDCDG00000034759) brd2a (ENSDCDG00000035175) #22 hsd17b8 (ENSDCDG00000035184) #27 col11a2 (ENSDCDG00000035209) #24 rxrba (ENSDCDG00000035254) ##25 myo1g (ENSDCDG00000035308) si:dkeyp-92c9.2 (ENSDCDG00000035424) illr1 (ENSDCDG00000035425) edn1 (ENSDCDG00000035426) HIVEP1 (ENSDCDG00000035429) TMEM170B (ENSDCDG00000035431) nedd9 (ENSDCDG00000035433) smim13 (ENSDCDG00000035434) zc3h12ab (ENSDCDG00000035435) oscp1a (ENSDCDG00000035436) LSM10 (ENSDCDG00000035437) eva1bb (ENSDCDG00000035438) Euteleosteomorpha ANCESTRAL SPECIES 72 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G ENSGT01100000263475.g.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00530000064569.a ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000012691 #31 ENSGT00390000008815 #30 ENSGT01030000234974 ENSGT00940000160798 ENSGT00940000155188.A ENSGT00940000180480 ENSGT00940000155565.b ENSGT00940000161047 Acanthomorphata ANCESTRAL SPECIES 157 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l ENSGT01100000263475.g.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 Euacanthomorphacea ANCESTRAL SPECIES 24 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l ENSGT01100000263475.g.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00950000183127.c.a ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00940000160076 #26 ENSGT00530000064569.a ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Percomorphaceae ANCESTRAL SPECIES 10 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l ENSGT01100000263475.g.b.i.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.a ENSGT00940000160076 #26 ENSGT00530000064569.a ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Tiger tail seahorse MODERN SPECIES 378 ENSHCOG00000001542 clk2a (ENSHCOG00000001553) ENSHCOG00000001556 dnajc8 (ENSHCOG00000001567) hnrnpr (ENSHCOG00000001582) ENSHCOG00000001593 ENSHCOG00000001599 ADGRB1 (ENSHCOG00000001610) zbtb22b (ENSHCOG00000001628) #36 kifc1 (ENSHCOG00000001646) znf384a (ENSHCOG00000001659) daxx (ENSHCOG00000001684) ENSHCOG00000001704 #37 psmb9a (ENSHCOG00000001707) #18 tap2a (ENSHCOG00000001771) brd2a (ENSHCOG00000001831) #22 Percomorphaceae_B ANCESTRAL SPECIES 15 ENSGT00940000179034 ENSGT01100000263475.g.b.i.b.b.a.a ENSGT01100000263475.g.b.i.b.b.a.b.a.a.b ENSGT00530000064569.a.c ENSGT00940000160076 #26 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT01100000263531.G.l.c.b.b ENSGT00980000199030 ENSGT01100000263531.G.l.c.b.a ENSGT01100000263531.G.l.c.a.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT00940000178142 ENSGT01050000244814.b.a ENSGT00940000159441.j ENSGT00940000162720.b.b.b Percomorphaceae_C ANCESTRAL SPECIES 15 ENSGT01100000263531.G.l.c.a.a ENSGT01100000263475.g.b.i.b.a ENSGT01100000263531.G.l.c.a.b.a.b ENSGT00940000179034 ENSGT01100000263475.g.b.i.b.b.a.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01100000263531.G.l.c.a.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT00940000178142 ENSGT01050000244814.b.a ENSGT00940000159441.j ENSGT00940000162720.b.b.b ENSGT00390000013183.d.b.b ENSGT00390000014743.i Percomorphaceae_D ANCESTRAL SPECIES 14 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a ENSGT01100000263475.g.b.i.b.b.b.c.a ENSGT01100000263491.a.a.c.b ENSGT01100000263475.g.b.i.b.a ENSGT01100000263531.G.l.c.a.b.a.b ENSGT01100000263475.g.b.i.b.b.a.b.a.a.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b Anabantaria ANCESTRAL SPECIES 16 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00940000179034 ENSGT01100000263475.g.b.i.b.b.a.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b ENSGT01030000234575.c.a.a.b ENSGT01000000214413.b.a.b.a.b ENSGT00390000013354.b.b ENSGT00950000182805.a.a.b.a.c.b Anabantoidei ANCESTRAL SPECIES 19 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00940000175658 ENSGT01100000263475.g.b.i.b.b.a.a.i ENSGT00940000179034 Climbing perch MODERN SPECIES 2 ENSATEG00000000227 ENSATEG00000000170 ENSATEG00000000165 kifc1 (ENSATEG00000000085) zbtb22b (ENSATEG00000025344) #36 daxx (ENSATEG00000000045) ENSATEG00000023943 #37 ENSATEG00000026662 ENSATEG00000021118 ENSATEG00000025934 psmb8a (ENSATEG00000020862) #16 psmb13a (ENSATEG00000020850) psmb12 (ENSATEG00000020837) psmb9a (ENSATEG00000020815) #18 tap2a (ENSATEG00000020695) brd2a (ENSATEG00000020651) #22 hsd17b8 (ENSATEG00000020634) #27 col11a2 (ENSATEG00000025364) #24 rxrba (ENSATEG00000020439) ##25 ENSATEG00000006638 ENSATEG00000002624 ENSATEG00000027101 ENSATEG00000020223 ENSATEG00000028455 ENSATEG00000027063 ENSATEG00000026869 ENSATEG00000027187 ENSATEG00000028969 ENSATEG00000019812 ENSATEG00000019671 ENSATEG00000019551 Siamese fighting fish MODERN SPECIES 2 ENSBSLG00000010415 FLOT1 (ENSBSLG00000010431) znf384a (ENSBSLG00000011079) kifc1 (ENSBSLG00000011098) zbtb22b (ENSBSLG00000011132) #36 daxx (ENSBSLG00000011135) ENSBSLG00000011142 #37 ENSBSLG00000011182 ENSBSLG00000012436 ENSBSLG00000012457 psmb8a (ENSBSLG00000013233) #16 psmb13a (ENSBSLG00000013100) psmb12 (ENSBSLG00000013288) psmb9a (ENSBSLG00000013381) #18 tap2a (ENSBSLG00000013432) brd2a (ENSBSLG00000013555) #22 hsd17b8 (ENSBSLG00000013605) #27 rxrba (ENSBSLG00000014708) ##25 ENSBSLG00000014953 ENSBSLG00000014965 ENSBSLG00000014974 ENSBSLG00000015030 ENSBSLG00000015033 ENSBSLG00000015042 ENSBSLG00000015134 ENSBSLG00000015139 ENSBSLG00000015140 ENSBSLG00000015234 ENSBSLG00000015650 ENSBSLG00000015736 slc39a7 (ENSBSLG00000016078) #26 Zig-zag eel MODERN SPECIES 2 ENSMAMG00000013950 ENSMAMG00000013990 ENSMAMG00000014019 ENSMAMG00000014051 ENSMAMG00000014076 zbtb22b (ENSMAMG00000014110) #36 daxx (ENSMAMG00000014117) ENSMAMG00000014125 #37 ENSMAMG00000014198 ENSMAMG00000014162 psmb8a (ENSMAMG00000014225) #16 psmb13a (ENSMAMG00000014245) psmb12 (ENSMAMG00000014269) psmb9a (ENSMAMG00000014286) #18 tap2a (ENSMAMG00000014321) brd2a (ENSMAMG00000014333) #22 hsd17b8 (ENSMAMG00000014386) #27 col11a2 (ENSMAMG00000014411) #24 rxrba (ENSMAMG00000014705) ##25 ENSMAMG00000014784 ENSMAMG00000014867 ENSMAMG00000016177 ENSMAMG00000014983 ENSMAMG00000027374 ENSMAMG00000016316 ENSMAMG00000018393 ENSMAMG00000018424 ENSMAMG00000018460 ENSMAMG00000018485 ENSMAMG00000018520 ENSMAMG00000027936 Carangaria ANCESTRAL SPECIES 14 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a ENSGT01100000263475.g.b.i.b.a ENSGT01100000263531.G.l.c.a.b.a.b ENSGT01100000263475.g.b.i.b.b.a.b.a.a.a ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a Carangaria_A ANCESTRAL SPECIES 36 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00940000175658 ENSGT01100000263475.g.b.i.b.b.a.a.n.a ENSGT01100000263475.g.b.i.b.a ENSGT01100000263531.G.l.c.a.b.a.b ENSGT01100000263475.g.b.i.b.b.a.b.a.a.a ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 Seriola ANCESTRAL SPECIES 175 ENSGT01100000263531.G.l.c.a.b.b.c.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 Greater amberjack MODERN SPECIES 289 ENSSDUG00000022940 psmb8a (ENSSDUG00000022932) #16 psmb13a (ENSSDUG00000022928) psmb12 (ENSSDUG00000022926) psmb9a (ENSSDUG00000022921) #18 tap2a (ENSSDUG00000022873) brd2a (ENSSDUG00000022856) #22 hsd17b8 (ENSSDUG00000022852) #27 col11a2 (ENSSDUG00000022818) #24 rxrba (ENSSDUG00000022795) ##25 ENSSDUG00000022150 Yellowtail amberjack MODERN SPECIES 2931 ENSSLDG00000014281 ENSSLDG00000014260 si:dkey-211g8.1 (ENSSLDG00000014250) ENSSLDG00000014227 ENSSLDG00000014192 slc39a7 (ENSSLDG00000014135) #26 ENSSLDG00000013923 ENSSLDG00000012788 ENSSLDG00000012552 ENSSLDG00000012491 psmb8a (ENSSLDG00000012460) #16 psmb13a (ENSSLDG00000012444) psmb12 (ENSSLDG00000012429) psmb9a (ENSSLDG00000012411) #18 tap2a (ENSSLDG00000012378) brd2a (ENSSLDG00000012321) #22 hsd17b8 (ENSSLDG00000012287) #27 col11a2 (ENSSLDG00000011802) #24 rxrba (ENSSLDG00000011656) ##25 ENSSLDG00000011592 Barramundi perch MODERN SPECIES 796 brd2a (ENSLCAG00010001588) #22 hsd17b8 (ENSLCAG00010001596) #27 Pleuronectoidei ANCESTRAL SPECIES 33 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b.f ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000175658 ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 Turbot MODERN SPECIES 14 ENSSMAG00000017532 ENSSMAG00000017526 ENSSMAG00000017501 kifc1 (ENSSMAG00000017488) zbtb22b (ENSSMAG00000017466) #36 daxx (ENSSMAG00000017448) ENSSMAG00000017420 #37 ENSSMAG00000034534 ENSSMAG00000033579 ENSSMAG00000017339 psmb8a (ENSSMAG00000017264) #16 psmb13a (ENSSMAG00000017232) psmb12 (ENSSMAG00000025754) psmb9a (ENSSMAG00000016444) #18 tap2a (ENSSMAG00000016419) brd2a (ENSSMAG00000016391) #22 ENSSMAG00000016373 rxrba (ENSSMAG00000016224) ##25 ENSSMAG00000016118 #24 hsd17b8 (ENSSMAG00000034900) #27 ccdc106b (ENSSMAG00000016070) cnot3b (ENSSMAG00000016031) ENSSMAG00000023995 dbpa (ENSSMAG00000015990) ENSSMAG00000035892 cacng7a (ENSSMAG00000012206) cacng8a (ENSSMAG00000012239) cacng6a (ENSSMAG00000012253) ENSSMAG00000012266 slc2a3a (ENSSMAG00000012273) ENSSMAG00000012309 Tongue sole MODERN SPECIES 9 si:dkey-211g8.1 (ENSCSEG00000019616) ENSCSEG00000019621 slc39a7 (ENSCSEG00000019631) #26 pvrl2l (ENSCSEG00000020115) TCF19 (ENSCSEG00000020123) ENSCSEG00000020130 ENSCSEG00000020132 rxrba (ENSCSEG00000020139) ##25 col11a2 (ENSCSEG00000020238) #24 ENSCSEG00000020317 ENSCSEG00000020334 erf (ENSCSEG00000020412) ENSCSEG00000020427 atp1a3a (ENSCSEG00000020433) ENSCSEG00000020439 brd2a (ENSCSEG00000020443) #22 zgc:91910 (ENSCSEG00000020446) bmp8a (ENSCSEG00000020450) ENSCSEG00000020455 ENSCSEG00000020457 ENSCSEG00000007715 ENSCSEG00000007727 ENSCSEG00000007737 ndufs5 (ENSCSEG00000007757) rnf19b (ENSCSEG00000007762) ak2 (ENSCSEG00000007777) ENSCSEG00000007792 ENSCSEG00000007809 ENSCSEG00000007824 ENSCSEG00000007833 sfpq (ENSCSEG00000007852) Eupercaria ANCESTRAL SPECIES 11 ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT01100000263475.g.b.i.b.b.a.a ENSGT01100000263475.g.b.i.b.a ENSGT01100000263475.g.b.i.b.b.a.b.a.a.a ENSGT01100000263531.G.l.c.a.b.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Tetraodontidae ANCESTRAL SPECIES 138 ENSGT01020000230438.B.a.a ENSGT00940000160076 #26 ENSGT01100000263475.g.b.i.b.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 Fugu MODERN SPECIES 3 ENSTRUG00000003327 #37 ENSTRUG00000030323 psmb8a (ENSTRUG00000026348) #16 ENSTRUG00000026807 psmb8a (ENSTRUG00000033329) #16 psmb8a (ENSTRUG00000029914) #16 ENSTRUG00000026896 psmb8a (ENSTRUG00000031792) #16 psmb8a (ENSTRUG00000031292) #16 ENSTRUG00000002296 psmb8 (ENSTRUG00000027947) #16 psmb13a (ENSTRUG00000002016) psmb12 (ENSTRUG00000003661) psmb9 (ENSTRUG00000024699) #18 tap2a (ENSTRUG00000003771) brd2a (ENSTRUG00000004723) #22 hsd17b8 (ENSTRUG00000005061) #27 col11a2 (ENSTRUG00000005534) #24 rxrba (ENSTRUG00000008509) ##25 ENSTRUG00000030249 ENSTRUG00000003539 psmb8a (ENSTRUG00000029732) #16 ENSTRUG00000032338 ENSTRUG00000032955 ENSTRUG00000032755 ENSTRUG00000032524 slc39a7 (ENSTRUG00000019578) #26 si:dkey-211g8.1 (ENSTRUG00000002779) ENSTRUG00000026791 RARB (ENSTRUG00000027704) top2b (ENSTRUG00000007059) Tetraodon MODERN SPECIES 26 cacng7a (ENSTNIG00000018192) cacng8a (ENSTNIG00000018191) cacng6a (ENSTNIG00000018190) ENSTNIG00000018189 slc2a3a (ENSTNIG00000018188) FLOT1 (ENSTNIG00000018187) znf384a (ENSTNIG00000000726) kifc1 (ENSTNIG00000018186) zbtb22b (ENSTNIG00000000019) #36 daxx (ENSTNIG00000018185) psmb8a (ENSTNIG00000018184) #16 psmb13a (ENSTNIG00000018183) psmb12 (ENSTNIG00000018182) psmb9a (ENSTNIG00000018181) #18 tap2a (ENSTNIG00000018180) brd2a (ENSTNIG00000018179) #22 hsd17b8 (ENSTNIG00000018178) #27 col11a2 (ENSTNIG00000018177) #24 rxrba (ENSTNIG00000018176) ##25 slc39a7 (ENSTNIG00000018175) #26 si:dkey-211g8.1 (ENSTNIG00000018174) RARB (ENSTNIG00000018173) top2b (ENSTNIG00000018172) ngly1 (ENSTNIG00000018171) OXSM (ENSTNIG00000018170) lrrc3b (ENSTNIG00000018169) eepd1 (ENSTNIG00000018168) MATCAP2 (ENSTNIG00000018167) anln (ENSTNIG00000018166) sdhaf3 (ENSTNIG00000018165) tac1 (ENSTNIG00000018164) Eupecaria_A ANCESTRAL SPECIES 12 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Ballan wrasse MODERN SPECIES 991 ENSLBEG00000024377 psmb8a (ENSLBEG00000024352) #16 psmb13a (ENSLBEG00000024329) psmb12 (ENSLBEG00000024163) tap2a (ENSLBEG00000024050) brd2a (ENSLBEG00000023987) #22 Eupecaria_B ANCESTRAL SPECIES 12 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.a.b ENSGT01100000263475.g.b.i.b.b.a.a ENSGT00940000179034 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a Perciformes ANCESTRAL SPECIES 11 ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Cottioidei ANCESTRAL SPECIES 16 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00940000160668 #27 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00390000001994 ENSGT00390000002457 ENSGT00390000010029 ENSGT00940000164651.a.a ENSGT00940000163195.A.d ENSGT00390000008029 ENSGT00390000003051 ENSGT00950000183046.b.b ENSGT00940000156923 ENSGT00950000182883.a.b.a ENSGT00940000155427.b Lumpfish MODERN SPECIES 2 atp1a3a (ENSCLMG00005006835) ENSCLMG00005006834 ENSCLMG00005006832 FLOT1 (ENSCLMG00005006713) znf384a (ENSCLMG00005006710) kifc1 (ENSCLMG00005006665) zbtb22b (ENSCLMG00005006664) #36 hsd17b8 (ENSCLMG00005006662) #27 daxx (ENSCLMG00005006661) ENSCLMG00005006658 #37 psmb8a (ENSCLMG00005006654) #16 psmb13a (ENSCLMG00005006648) psmb12 (ENSCLMG00005006642) psmb9a (ENSCLMG00005006636) #18 tap2a (ENSCLMG00005006548) brd2a (ENSCLMG00005006528) #22 ENSCLMG00005006516 rxrba (ENSCLMG00005005745) ##25 asns (ENSCLMG00005005596) tac1 (ENSCLMG00005005592) ENSCLMG00005005590 sdhaf3 (ENSCLMG00005005588) c1galt1a (ENSCLMG00005005586) rpa3 (ENSCLMG00005005584) umad1 (ENSCLMG00005005582) glcci1a (ENSCLMG00005005480) phf14 (ENSCLMG00005003998) nxph1 (ENSCLMG00005003990) ENSCLMG00005003989 thsd7aa (ENSCLMG00005003987) ilf2 (ENSCLMG00005003962) Stickleback MODERN SPECIES 468 psmb8a (ENSGACG00000000133) #16 psmb13a (ENSGACG00000000131) psmb12 (ENSGACG00000000130) psmb9a (ENSGACG00000000129) #18 tap2a (ENSGACG00000000128) psmb8a (ENSGACG00000000127) #16 ENSGACG00000000125 #37 ENSGACG00000000122 psmb8a (ENSGACG00000000118) #16 ENSGACG00000000117 #37 ENSGACG00000000116 psmb8a (ENSGACG00000000113) #16 psmb13a (ENSGACG00000000112) psmb12 (ENSGACG00000000110) psmb9a (ENSGACG00000000107) #18 brd2a (ENSGACG00000000103) #22 col11a2 (ENSGACG00000000099) #24 rxrba (ENSGACG00000000096) ##25 asns (ENSGACG00000000094) tac1 (ENSGACG00000000093) sdhaf3 (ENSGACG00000000092) c1galt1a (ENSGACG00000000091) ENSGACG00000000088 rpa3 (ENSGACG00000000085) umad1 (ENSGACG00000000083) glcci1a (ENSGACG00000000080) phf14 (ENSGACG00000000074) nxph1 (ENSGACG00000000071) thsd7aa (ENSGACG00000000067) Perciformes_a ANCESTRAL SPECIES 14 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.d ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.a.b ENSGT01100000263475.g.b.i.b.b.a.a ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00530000064569.a.d ENSGT01020000230438.B.a.a ENSGT01100000263571.i.a.b ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a Pike perch MODERN SPECIES 13 ENSSLUG00000004375 ENSSLUG00000004365 ENSSLUG00000004276 FLOT1 (ENSSLUG00000004212) znf384a (ENSSLUG00000004172) kifc1 (ENSSLUG00000003894) zbtb22b (ENSSLUG00000003858) #36 daxx (ENSSLUG00000003851) ENSSLUG00000003845 #37 ENSSLUG00000003829 psmb8a (ENSSLUG00000003790) #16 psmb13a (ENSSLUG00000003762) psmb12 (ENSSLUG00000003728) psmb9a (ENSSLUG00000003702) #18 tap2a (ENSSLUG00000003589) brd2a (ENSSLUG00000003513) #22 hsd17b8 (ENSSLUG00000003447) #27 col11a2 (ENSSLUG00000003134) #24 rxrba (ENSSLUG00000002724) ##25 ENSSLUG00000002694 ENSSLUG00000002692 ENSSLUG00000002682 ENSSLUG00000002679 ENSSLUG00000002674 ENSSLUG00000002656 Channel bull blenny MODERN SPECIES 2 ENSCGOG00000013844 ENSCGOG00000013843 ENSCGOG00000013817 FLOT1 (ENSCGOG00000013091) znf384a (ENSCGOG00000013052) kifc1 (ENSCGOG00000013039) zbtb22b (ENSCGOG00000013032) #36 daxx (ENSCGOG00000013025) ENSCGOG00000013015 #37 ENSCGOG00000013008 psmb8a (ENSCGOG00000012929) #16 psmb13a (ENSCGOG00000012849) psmb12 (ENSCGOG00000012825) psmb9a (ENSCGOG00000012765) #18 tap2a (ENSCGOG00000012500) brd2a (ENSCGOG00000012475) #22 hsd17b8 (ENSCGOG00000012472) #27 ENSCGOG00000012463 #24 ENSCGOG00000012455 #24 rxrba (ENSCGOG00000011174) ##25 ENSCGOG00000011143 ENSCGOG00000011136 #37 ENSCGOG00000011128 slc39a7 (ENSCGOG00000011123) #26 ENSCGOG00000011119 ENSCGOG00000011089 si:dkey-211g8.1 (ENSCGOG00000011085) ENSCGOG00000011083 ENSCGOG00000011080 ENSCGOG00000011064 necap1 (ENSCGOG00000011059) Eupecaria_C ANCESTRAL SPECIES 13 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.b ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.e.b Gilthead seabream MODERN SPECIES 17 ENSSAUG00010000261 zbtb22b (ENSSAUG00010000206) #36 daxx (ENSSAUG00010000185) ENSSAUG00010000163 #37 ENSSAUG00010020905 ENSSAUG00010020904 ENSSAUG00010020634 ENSSAUG00010020630 ENSSAUG00010020629 ENSSAUG00010020626 psmb8a (ENSSAUG00010020623) #16 psmb13a (ENSSAUG00010020621) psmb12 (ENSSAUG00010020617) psmb9a (ENSSAUG00010020612) #18 tap2a (ENSSAUG00010020600) brd2a (ENSSAUG00010020584) #22 hsd17b8 (ENSSAUG00010020578) #27 col11a2 (ENSSAUG00010020554) #24 rxrba (ENSSAUG00010020329) ##25 rcvrn3 (ENSSAUG00010020327) si:ch211-232m10.6 (ENSSAUG00010020326) epn1b (ENSSAUG00010020324) necap1 (ENSSAUG00010020320) ENSSAUG00010020319 ENSSAUG00010020317 si:dkey-211g8.1 (ENSSAUG00010020315) ENSSAUG00010020310 ENSSAUG00010020306 ENSSAUG00010020298 slc39a7 (ENSSAUG00010020291) #26 ENSSAUG00010020288 Eupercaria_incertae_sedis ANCESTRAL SPECIES 10 ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.e.b European seabass MODERN SPECIES 17 cdkn2c (ENSDLAG00005025808) TTC39A (ENSDLAG00005026927) EPS15 (ENSDLAG00005025713) calr (ENSDLAG00005033857) osbpl9 (ENSDLAG00005025558) abl2 (ENSDLAG00005025519) soat1 (ENSDLAG00005025506) ENSDLAG00005032223 ENSDLAG00005028491 ENSDLAG00005020938 ENSDLAG00005020583 psmb12 (ENSDLAG00005031475) psmb9a (ENSDLAG00005031842) #18 ENSDLAG00005033124 tap2a (ENSDLAG00005012408) brd2a (ENSDLAG00005027447) #22 hsd17b8 (ENSDLAG00005012500) #27 col11a2 (ENSDLAG00005012553) #24 rxrba (ENSDLAG00005013884) ##25 ENSDLAG00005014407 ENSDLAG00005034580 ENSDLAG00005030753 ENSDLAG00005033640 ENSDLAG00005029884 ENSDLAG00005031033 ENSDLAG00005034677 ENSDLAG00005003755 ENSDLAG00005027049 qsox1 (ENSDLAG00005020563) lhx4 (ENSDLAG00005020552) acbd6 (ENSDLAG00005020504) Large yellow croaker MODERN SPECIES 484 ENSLCRG00005006980 ENSLCRG00005006981 ENSLCRG00005006983 FLOT1 (ENSLCRG00005006989) znf384a (ENSLCRG00005007021) kifc1 (ENSLCRG00005007024) zbtb22b (ENSLCRG00005007212) #36 daxx (ENSLCRG00005007215) ENSLCRG00005007216 #37 mhc1uba (ENSLCRG00005007218) psmb8a (ENSLCRG00005007223) #16 psmb13a (ENSLCRG00005007234) psmb12 (ENSLCRG00005007350) psmb9a (ENSLCRG00005007355) #18 tap2a (ENSLCRG00005007358) brd2a (ENSLCRG00005007420) #22 hsd17b8 (ENSLCRG00005007428) #27 col11a2 (ENSLCRG00005007444) #24 rxrba (ENSLCRG00005007635) ##25 ENSLCRG00005008487 gdf6b (ENSLCRG00005008488) pkhd1l1.2 (ENSLCRG00005008489) ENSLCRG00005008497 nudcd1 (ENSLCRG00005008501) trhrb (ENSLCRG00005008507) TMEM74 (ENSLCRG00005008508) eif3eb (ENSLCRG00005008510) pleca (ENSLCRG00005008755) ENSLCRG00005009094 ENSLCRG00005009095 ENSLCRG00005009096 Ovalentaria ANCESTRAL SPECIES 12 ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b ENSGT00980000199030 ENSGT01100000263531.G.l.c.b.a ENSGT01100000263531.G.l.c.a.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.p ENSGT00940000179034 ENSGT01100000263475.g.b.i.b.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT01020000230438.B.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a Atherinomorphae ANCESTRAL SPECIES 12 ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.b.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT01020000230438.B.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Cyprinodontiformes ANCESTRAL SPECIES 10 ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT01020000230438.B.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Aplocheiloidei ANCESTRAL SPECIES 42 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000164565 ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.b.a ENSGT01100000263531.G.l.c.b.b.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT01020000230438.B.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j Mangrove rivulus MODERN SPECIES 103 ENSKMAG00000021605 FLOT1 (ENSKMAG00000021596) znf384a (ENSKMAG00000021584) ENSKMAG00000021568 zbtb22b (ENSKMAG00000021557) #36 daxx (ENSKMAG00000021552) ENSKMAG00000021543 #37 ENSKMAG00000021538 ENSKMAG00000021531 ENSKMAG00000021508 psmb8a (ENSKMAG00000021487) #16 psmb13a (ENSKMAG00000021478) psmb12 (ENSKMAG00000021471) psmb9a (ENSKMAG00000021464) #18 tap2a (ENSKMAG00000021448) brd2a (ENSKMAG00000021440) #22 hsd17b8 (ENSKMAG00000021426) #27 col11a2 (ENSKMAG00000021370) #24 ENSKMAG00000021349 rxrba (ENSKMAG00000021308) ##25 ENSKMAG00000020095 ENSKMAG00000019718 ENSKMAG00000019705 slc39a7 (ENSKMAG00000019682) #26 ENSKMAG00000019658 ENSKMAG00000019637 ENSKMAG00000019625 ENSKMAG00000019596 ENSKMAG00000019581 necap1 (ENSKMAG00000019560) epn1b (ENSKMAG00000019541) Turquoise killifish MODERN SPECIES 1628 ENSNFUG00015020373 pvrl2l (ENSNFUG00015020368) ENSNFUG00015020362 ENSNFUG00015020359 znf384a (ENSNFUG00015020357) FLOT1 (ENSNFUG00015019402) kifc1 (ENSNFUG00015018986) zbtb22b (ENSNFUG00015018976) #36 daxx (ENSNFUG00015018969) OLA.21318 (ENSNFUG00015018964) #37 ORLA-UAA (ENSNFUG00015018960) ENSNFUG00015018955 psmb8a (ENSNFUG00015018952) #16 PSMB10 (ENSNFUG00015018946) tap2a (ENSNFUG00015018409) brd2a (ENSNFUG00015018382) #22 rxrba (ENSNFUG00015017778) ##25 ENSNFUG00015017745 necap1 (ENSNFUG00015017743) epn1b (ENSNFUG00015017740) si:ch211-232m10.6 (ENSNFUG00015017736) rcvrn3 (ENSNFUG00015017733) RBM48 (ENSNFUG00015017728) pex1 (ENSNFUG00015017713) elmo1 (ENSNFUG00015017686) COX6B1 (ENSNFUG00015017670) ENSNFUG00015017669 slc2a3a (ENSNFUG00015017612) ENSNFUG00015017551 ENSNFUG00015017527 clcn1a (ENSNFUG00015015463) Cyprinodontoidei ANCESTRAL SPECIES 31 ENSGT00940000157292.fc.a ENSGT00940000160115.a.b ENSGT00940000177056.b ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.a.b.b.b.a ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT01020000230438.B.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j NAME_4 ANCESTRAL SPECIES 312 ENSGT01100000263531.G.l.c.b.b.a.b.a.b ENSGT00940000157293 #16 ENSGT00940000165504.a.b ENSGT00940000165504.a.a ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 Mummichog MODERN SPECIES 707 ENSFHEG00000011244 psmb8a (ENSFHEG00000011266) #16 psmb13a (ENSFHEG00000011287) psmb12 (ENSFHEG00000011294) psmb9a (ENSFHEG00000011307) #18 tap2a (ENSFHEG00000011535) brd2a (ENSFHEG00000011623) #22 hsd17b8 (ENSFHEG00000011697) #27 col11a2 (ENSFHEG00000011909) #24 rxrba (ENSFHEG00000011943) ##25 ENSFHEG00000011949 Sheepshead minnow MODERN SPECIES 1595 psmb13a (ENSCVAG00000009563) psmb12 (ENSCVAG00000009457) psmb9a (ENSCVAG00000009196) #18 tap2a (ENSCVAG00000009113) brd2a (ENSCVAG00000008493) #22 hsd17b8 (ENSCVAG00000008475) #27 col11a2 (ENSCVAG00000008318) #24 Poeciliinae ANCESTRAL SPECIES 24 ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.a.b.b.b.a.a ENSGT00940000165504.a.a ENSGT00940000165375.l.b ENSGT00940000159897.u.a #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.b.a ENSGT01100000263475.g.b.i.b.a.u.a.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.a.t.b ENSGT01100000263475.g.b.i.b.b.a.a.o.b.b ENSGT01100000263475.g.b.i.b.b.b.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c.a ENSGT00530000064569.a.c.b ENSGT01020000230438.B.a.a.d Poecilia ANCESTRAL SPECIES 38 ENSGT00940000160115.a.b ENSGT00940000177056.b ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.a.b.b.b.a.a ENSGT00940000159897.v #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.b.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.a.u.a.b ENSGT01100000263475.g.b.i.b.b.a.a.o.b.b.a ENSGT01100000263475.g.b.i.b.a.t.a ENSGT01100000263475.g.b.i.b.b.a.a.o.b.b.b ENSGT01100000263475.g.b.i.b.b.b.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c.a ENSGT00530000064569.a.c.b NAME_6 ANCESTRAL SPECIES 260 ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.a.b.b.b.a.a ENSGT01100000263531.G.l.c.b.b.a.a.a.b.a.a ENSGT01100000263531.G.l.c.b.b.a.b.b.a.b ENSGT00940000157293 #16 ENSGT00940000165504.a.a ENSGT00940000165375.l.b ENSGT00940000159897.u.a #18 ENSGT00940000159897.v #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00980000199868 ENSGT00940000159208.A ##25 Amazon molly MODERN SPECIES 408 znf384a (ENSPFOG00000001513) ENSPFOG00000001625 daxx (ENSPFOG00000001776) ENSPFOG00000001875 #37 ENSPFOG00000001963 ENSPFOG00000001994 ENSPFOG00000022893 ENSPFOG00000002477 ENSPFOG00000002483 ENSPFOG00000020410 psmb8a (ENSPFOG00000002515) #16 psmb13a (ENSPFOG00000002712) psmb12 (ENSPFOG00000002888) psmb9a (ENSPFOG00000002976) #18 tap2a (ENSPFOG00000003049) brd2a (ENSPFOG00000003172) #22 hsd17b8 (ENSPFOG00000003296) #27 col11a2 (ENSPFOG00000003376) #24 rxrba (ENSPFOG00000006042) ##25 ENSPFOG00000024841 ENSPFOG00000022915 ENSPFOG00000023255 ENSPFOG00000006289 ENSPFOG00000023830 ENSPFOG00000006305 ENSPFOG00000023303 ENSPFOG00000006308 ENSPFOG00000006309 ENSPFOG00000022409 ENSPFOG00000006312 ENSPFOG00000006366 Sailfin molly MODERN SPECIES 1439 brd2a (ENSPLAG00000010428) #22 hsd17b8 (ENSPLAG00000010360) #27 col11a2 (ENSPLAG00000010342) #24 ENSPLAG00000010069 rxrba (ENSPLAG00000010059) ##25 ENSPLAG00000010041 ENSPLAG00000010018 Guppy MODERN SPECIES 441 ENSPREG00000002583 #37 ENSPREG00000002595 ENSPREG00000002618 ENSPREG00000002651 ENSPREG00000002791 ENSPREG00000003751 ENSPREG00000004458 ENSPREG00000004474 ENSPREG00000004483 ENSPREG00000004501 psmb8a (ENSPREG00000004512) #16 psmb13a (ENSPREG00000004542) psmb12 (ENSPREG00000004559) psmb9a (ENSPREG00000004577) #18 tap2a (ENSPREG00000004588) brd2a (ENSPREG00000004637) #22 hsd17b8 (ENSPREG00000004683) #27 col11a2 (ENSPREG00000004962) #24 rxrba (ENSPREG00000006455) ##25 ENSPREG00000006476 ENSPREG00000006486 ENSPREG00000006499 ENSPREG00000006514 ENSPREG00000006542 ENSPREG00000006570 ENSPREG00000006633 ENSPREG00000006702 ak2 (ENSPREG00000006722) rnf19b (ENSPREG00000006750) ndufs5 (ENSPREG00000006768) ENSPREG00000006782 Platyfish MODERN SPECIES 4 ENSXMAG00000024529 ENSXMAG00000030051 ENSXMAG00000000946 ENSXMAG00000024499 ENSXMAG00000005036 ENSXMAG00000029030 ENSXMAG00000022363 ENSXMAG00000014656 ENSXMAG00000014655 psmb8a (ENSXMAG00000014653) #16 psmb13a (ENSXMAG00000014635) psmb12 (ENSXMAG00000014628) psmb9a (ENSXMAG00000014611) #18 ENSXMAG00000023438 tap2a (ENSXMAG00000014564) brd2a (ENSXMAG00000003412) #22 ENSXMAG00000022790 hsd17b8 (ENSXMAG00000014560) #27 col11a2 (ENSXMAG00000014307) #24 ENSXMAG00000021292 rxrba (ENSXMAG00000014275) ##25 ENSXMAG00000021175 ENSXMAG00000029060 ENSXMAG00000029328 ENSXMAG00000021966 ENSXMAG00000029353 ENSXMAG00000014271 ENSXMAG00000016596 ENSXMAG00000024984 ENSXMAG00000014268 ENSXMAG00000014253 Oryzias ANCESTRAL SPECIES 23 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.b.a.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT01100000263475.g.b.i.a.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.p ENSGT01030000234575.c.a.a.b ENSGT01000000214413.b.a.b.a.b ENSGT00390000013354.b.b ENSGT00950000182805.a.a.b.a.c.b ENSGT00940000153675.a.a.a.a.a.b.a.a ENSGT00940000155088.b.a.a ENSGT00940000164382.b.a ENSGT00510000046803.b.a.b ENSGT00390000000062.a ENSGT00950000183106.a.b.a ENSGT00940000157383.g.a Oryzias_a ANCESTRAL SPECIES 18 ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.b.a.b.c.b.b ENSGT00980000198488 #29 ENSGT01100000263531.G.l.c.b.b.b.a.b.d ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT01100000263475.g.b.i.a.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.p ENSGT01030000234575.c.a.a.b ENSGT01000000214413.b.a.b.a.b ENSGT00390000013354.b.b ENSGT00950000182805.a.a.b.a.c.b ENSGT00940000153675.a.a.a.a.a.b.a.a ENSGT00940000155088.b.a.a ENSGT00940000164382.b.a ENSGT00510000046803.b.a.b ENSGT00390000000062.a ENSGT00950000183106.a.b.a ENSGT00940000157383.g.a Chinese medaka MODERN SPECIES 1100 psmb9a (ENSOSIG00000007131) #18 tap2a (ENSOSIG00000007045) ENSOSIG00000007042 brd2a (ENSOSIG00000007041) #22 hsd17b8 (ENSOSIG00000007040) #27 col11a2 (ENSOSIG00000003116) #24 ENSOSIG00000000905 ENSOSIG00000000863 gnb3b (ENSOSIG00000000843) tpi1a (ENSOSIG00000000826) eno2 (ENSOSIG00000023779) cdc42l (ENSOSIG00000023771) chd4a (ENSOSIG00000023642) vamp1a (ENSOSIG00000023569) IFFO1 (ENSOSIG00000023568) sycp3 (ENSOSIG00000023567) ENSOSIG00000023566 clcn1a (ENSOSIG00000023230) ENSOSIG00000023077 Japanese Medaka HdrR MODERN SPECIES 2 ENSORLG00000006938 znf384a (ENSORLG00000006888) kifc1 (ENSORLG00000006878) zbtb22b (ENSORLG00000006852) #36 daxx (ENSORLG00000006837) tapbp.1 (ENSORLG00000006820) #37 orla-uba (ENSORLG00000006798) orla-uaa (ENSORLG00000006772) psmb8a (ENSORLG00000006783) #16 psmb13a (ENSORLG00000027659) psmb12 (ENSORLG00000006662) psmb9a (ENSORLG00000006646) #18 tap2a (ENSORLG00000006618) ENSORLG00000006575 ENSORLG00000023457 brd2a (ENSORLG00000006565) #22 hsd17b8 (ENSORLG00000006546) #27 col11a2 (ENSORLG00000006525) #24 rxrba (ENSORLG00000006476) ##25 ENSORLG00000006435 ENSORLG00000006423 gnb3b (ENSORLG00000006403) tpi1a (ENSORLG00000006391) eno2 (ENSORLG00000006369) ENSORLG00000006335 chd4a (ENSORLG00000006310) vamp1a (ENSORLG00000006193) ENSORLG00000006171 ENSORLG00000006147 ENSORLG00000006141 clcn1a (ENSORLG00000006134) Oryzias_b ANCESTRAL SPECIES 27 ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.b.a.b.a.a.a ENSGT01100000263531.G.l.c.b.b.b.a.b.a.b.b ENSGT01100000263531.G.l.c.b.b.b.a.a ENSGT00940000157293.m #16 ENSGT00940000165504 ENSGT00940000165375.j ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT01100000263475.g.b.i.a.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.p ENSGT01030000234575.c.a.a.b ENSGT01000000214413.b.a.b.a.b ENSGT00390000013354.b.b ENSGT00950000182805.a.a.b.a.c.b ENSGT00940000153675.a.a.a.a.a.b.a.a ENSGT00940000155088.b.a.a ENSGT00940000164382.b.a ENSGT00510000046803.b.a.b ENSGT00390000000062.a ENSGT00950000183106.a.b.a ENSGT00940000157383.g.a Indian medaka MODERN SPECIES 3 bmp8a (ENSOMEG00000017579) zgc:91910 (ENSOMEG00000017473) gsk3aa (ENSOMEG00000017463) erf (ENSOMEG00000017429) POU2F2 (ENSOMEG00000017387) atp1a3a (ENSOMEG00000017324) ENSOMEG00000017189 pvrl2l (ENSOMEG00000017177) ENSOMEG00000017142 psmb8a (ENSOMEG00000017126) #16 psmb13a (ENSOMEG00000017102) psmb12 (ENSOMEG00000017077) psmb9a (ENSOMEG00000017066) #18 tap2a (ENSOMEG00000017039) ENSOMEG00000016942 brd2a (ENSOMEG00000016921) #22 hsd17b8 (ENSOMEG00000016888) #27 col11a2 (ENSOMEG00000016833) #24 rxrba (ENSOMEG00000016683) ##25 ENSOMEG00000016603 ENSOMEG00000016597 gnb3b (ENSOMEG00000016580) tpi1a (ENSOMEG00000016550) eno2 (ENSOMEG00000016496) cdc42l (ENSOMEG00000016451) chd4a (ENSOMEG00000016394) vamp1a (ENSOMEG00000016268) IFFO1 (ENSOMEG00000016246) sycp3 (ENSOMEG00000016210) ENSOMEG00000016169 clcn1a (ENSOMEG00000016076) Javanese ricefish MODERN SPECIES 2 rps18 (ENSOJAG00000020363) #31 ENSOJAG00000020384 #30 kifc1 (ENSOJAG00000020394) zbtb22b (ENSOJAG00000020416) #36 daxx (ENSOJAG00000020425) ENSOJAG00000020441 #37 ENSOJAG00000020462 ENSOJAG00000020489 ENSOJAG00000020526 psmb8a (ENSOJAG00000020691) #16 psmb13a (ENSOJAG00000020701) psmb12 (ENSOJAG00000020756) psmb9a (ENSOJAG00000020812) #18 tap2a (ENSOJAG00000020861) ENSOJAG00000020957 brd2a (ENSOJAG00000020985) #22 hsd17b8 (ENSOJAG00000021033) #27 col11a2 (ENSOJAG00000021077) #24 rxrba (ENSOJAG00000021121) ##25 ENSOJAG00000021309 gnb3b (ENSOJAG00000021314) tpi1a (ENSOJAG00000021332) eno2 (ENSOJAG00000001771) cdc42l (ENSOJAG00000001852) chd4a (ENSOJAG00000001976) ENSOJAG00000002551 IFFO1 (ENSOJAG00000002626) sycp3 (ENSOJAG00000002637) ENSOJAG00000002666 clcn1a (ENSOJAG00000002727) ENSOJAG00000003000 Ovalentaria_B ANCESTRAL SPECIES 15 ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b ENSGT01100000263475.g.b.i.b.b.a.a.p.a ENSGT01100000263531.G.l.c.b.a ENSGT01100000263531.G.l.c.a.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.p.b ENSGT01100000263475.g.b.i.b.a ENSGT00940000179034 ENSGT01100000263475.g.b.i.b.b.a.a.o.a ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT01020000230438.B.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j Cichlidae ANCESTRAL SPECIES 7 ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b ENSGT01020000230438.B.a.a.h ENSGT01020000230438.B.a.a.g.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT00940000178142 ENSGT01050000244814.b.a ENSGT00940000159441.j ENSGT00940000162720.b.b.b ENSGT00390000013183.d.b.b Midas cichlid DUPLICATION Midas cichlid MODERN SPECIES 1335 brd2a (ENSACIG00000014202) #22 hsd17b8 (ENSACIG00000014220) #27 ENSACIG00000014247 #22 col11a2 (ENSACIG00000014261) #24 ENSACIG00000014315 #24 Midas cichlid MODERN SPECIES 1335 brd2a (ENSACIG00000014202) #22 hsd17b8 (ENSACIG00000014220) #27 ENSACIG00000014247 #22 col11a2 (ENSACIG00000014261) #24 ENSACIG00000014315 #24 Pseudocrenilabrinae ANCESTRAL SPECIES 12 ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT01100000263531.G.l.c.b.b.c.a.b.a.b.a ENSGT00940000157293 #16 ENSGT00940000165504.i.a ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.a ENSGT01020000230438.B.a.a.g.b.b ENSGT01020000230438.B.a.a.h ENSGT01020000230438.B.a.a.g.a.a.a ENSGT01020000230438.B.a.a.g.a.b.a.a ENSGT00390000007165.b ENSGT00940000167481 ENSGT00390000009359.a.a ENSGT00940000160411.j ENSGT01050000244814.b.a ENSGT00940000159441.j ENSGT00940000162720.b.b.b Nile tilapia MODERN SPECIES 13 ENSONIG00000012482 ENSONIG00000039848 ENSONIG00000012501 ENSONIG00000012484 ENSONIG00000032007 ENSONIG00000027769 ENSONIG00000020056 ENSONIG00000032482 ENSONIG00000020051 ENSONIG00000030599 psmb8a (ENSONIG00000020048) #16 psmb13a (ENSONIG00000020047) psmb12 (ENSONIG00000020045) psmb9a (ENSONIG00000020043) #18 tap2a (ENSONIG00000020042) brd2a (ENSONIG00000020040) #22 hsd17b8 (ENSONIG00000020036) #27 col11a2 (ENSONIG00000020011) #24 rxrba (ENSONIG00000020007) ##25 ENSONIG00000003548 ENSONIG00000020000 ENSONIG00000032431 ENSONIG00000020006 ENSONIG00000020001 ENSONIG00000042199 ENSONIG00000042028 ENSONIG00000042434 ENSONIG00000019997 ENSONIG00000034715 ENSONIG00000019998 ENSONIG00000007098 Pseudocrenilabrinae_A ANCESTRAL SPECIES 9 ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT01100000263531.G.l.c.b.b.c.a.b.a.b.a ENSGT00940000157293 #16 ENSGT00940000165504.i.b ENSGT00940000165375.r ENSGT00940000159897.hb.a #18 ENSGT00940000155431.b.s.a.a ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.a.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.b ENSGT01100000263475.g.b.i.b.b.a.b.a.b.f ENSGT01100000263475.g.b.i.b.b.a.b.a.b.e ENSGT00940000160076 #26 ENSGT01020000230438.B.a.a.h ENSGT01020000230438.B.a.a.g.a.a.a ENSGT01020000230438.B.a.a.g.a.a.b ENSGT01020000230438.B.a.a.g.a.b.a.a ENSGT01020000230438.B.a.a.g.b.a ENSGT00390000007165.b Haplochromini ANCESTRAL SPECIES 5 ENSGT00940000157292.fc.a ENSGT00940000160115.a.b ENSGT00940000165134.a.a ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00940000165504.i.a ENSGT00940000165375.s ENSGT00940000159897.ib #18 ENSGT00940000155431.b.t ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.a.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.a.b ENSGT01100000263475.g.b.i.b.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.a.b ENSGT01020000230438.B.a.a.g.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.b ENSGT01100000263475.g.b.i.b.b.a.b.a.b.f ENSGT01100000263475.g.b.i.b.b.a.b.a.b.e ENSGT00940000160076 #26 ENSGT01020000230438.B.a.a.h Haplochromini_A ANCESTRAL SPECIES 5 ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT01100000263489.a.a.b.a.a.b.a.a.a.b.b.d ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.c.a.b.a.b.b.b ENSGT01100000263475.g.b.i.b.b.a.a.p.a ENSGT01100000263531.G.l.c.b.b.c.b.b ENSGT01100000263531.G.l.c.b.a.a.c.a ENSGT01100000263531.G.l.c.b.b.c.a.b.b ENSGT00940000157293 #16 ENSGT00940000165504.i.a ENSGT00940000165375.s ENSGT00940000159897.ib #18 ENSGT00940000155431.b.t ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.a.b.b ENSGT01100000263475.g.b.i.b.b.a.b.b.b.a.a.b ENSGT01100000263475.g.b.i.b.b.a.b.b.b.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.a.a.b.a ENSGT01100000263475.g.b.i.b.b.a.b.b.a.a ENSGT01100000263475.g.b.i.b.b.a.b.b.b.a.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.a.a.b ENSGT01020000230438.B.a.a.g.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.b ENSGT01100000263475.g.b.i.b.b.a.b.a.b.f Haplochromini_B ANCESTRAL SPECIES 1 ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT01100000263489.a.a.b.a.a.b.a.a.a.b.b.d ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.b.b.c.a.b.a.b.b.b.a ENSGT01100000263531.G.l.c.b.b.c.a.b.a.a.a.a ENSGT00940000157293 #16 ENSGT00940000165504.j ENSGT00940000165375.s ENSGT00940000159897.ib #18 ENSGT00940000155431.b.t ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.b ENSGT00940000182499 ENSGT01100000263475.g.b.i.b.b.a.a.o.a.b.a.a ENSGT00940000164249.a.g.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.a.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.a.a.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.b.b.a ENSGT01100000263475.g.b.i.b.a ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.a.b ENSGT01020000230438.B.a.a.g.b.b ENSGT01100000263475.g.b.i.b.b.a.a.o.a.a.b.a.b.b ENSGT01100000263475.g.b.i.b.b.a.b.a.b.f Zebra mbuna MODERN SPECIES 1104 ENSMZEG00005025956 ENSMZEG00005025853 ENSMZEG00005025734 ENSMZEG00005025269 ENSMZEG00005025225 ENSMZEG00005025203 ENSMZEG00005025151 ENSMZEG00005025113 ENSMZEG00005023962 ENSMZEG00005023961 psmb8a (ENSMZEG00005023960) #16 psmb13a (ENSMZEG00005023959) psmb12 (ENSMZEG00005023958) psmb9a (ENSMZEG00005023957) #18 tap2a (ENSMZEG00005023956) brd2a (ENSMZEG00005023955) #22 hsd17b8 (ENSMZEG00005023954) #27 ENSMZEG00005023953 col11a2 (ENSMZEG00005023952) #24 rxrba (ENSMZEG00005023951) ##25 ENSMZEG00005023949 ENSMZEG00005023948 ENSMZEG00005023947 ENSMZEG00005023946 ENSMZEG00005023945 ENSMZEG00005023944 ENSMZEG00005023943 ENSMZEG00005023942 ENSMZEG00005023941 ENSMZEG00005023940 ENSMZEG00005023939 Eastern happy MODERN SPECIES 13 ENSACLG00000020554 ENSACLG00000020542 ENSACLG00000020527 FLOT1 (ENSACLG00000020490) znf384a (ENSACLG00000020430) kifc1 (ENSACLG00000020375) zbtb22b (ENSACLG00000020367) #36 ENSACLG00000020357 ENSACLG00000020333 daxx (ENSACLG00000020304) ENSACLG00000020250 #37 ENSACLG00000020081 ENSACLG00000019936 psmb9a (ENSACLG00000019881) #18 tap2a (ENSACLG00000019851) brd2a (ENSACLG00000019828) #22 hsd17b8 (ENSACLG00000019789) #27 col11a2 (ENSACLG00000019626) #24 rxrba (ENSACLG00000019530) ##25 ENSACLG00000019485 ENSACLG00000019472 ENSACLG00000019467 ENSACLG00000019346 ENSACLG00000019330 ENSACLG00000019310 ENSACLG00000019297 ENSACLG00000019278 ENSACLG00000019249 ENSACLG00000018355 ENSACLG00000017769 ENSACLG00000017727 P. nyererei MODERN SPECIES 603 ENSPNYG00000009779 ENSPNYG00000010434 psmb8a (ENSPNYG00000011734) #16 psmb13a (ENSPNYG00000011763) psmb12 (ENSPNYG00000011789) psmb9a (ENSPNYG00000011803) #18 tap2a (ENSPNYG00000011868) brd2a (ENSPNYG00000012119) #22 hsd17b8 (ENSPNYG00000012178) #27 ENSPNYG00000012320 #24 ENSPNYG00000012370 #24 rxrba (ENSPNYG00000012447) ##25 ENSPNYG00000012725 ENSPNYG00000013530 ENSPNYG00000013880 ENSPNYG00000014974 ENSPNYG00000015143 ENSPNYG00000015950 ENSPNYG00000016910 ENSPNYG00000017798 ENSPNYG00000018883 Burton s mouthbrooder MODERN SPECIES 803 ENSHBUG00000010781 ENSHBUG00000010770 psmb8a (ENSHBUG00000010761) #16 psmb13a (ENSHBUG00000010757) psmb12 (ENSHBUG00000010715) psmb9a (ENSHBUG00000000871) #18 tap2a (ENSHBUG00000010698) ENSHBUG00000010693 ENSHBUG00000010680 #22 ENSHBUG00000010665 rxrba (ENSHBUG00000010641) ##25 ENSHBUG00000010583 ENSHBUG00000010523 ENSHBUG00000009583 ENSHBUG00000009536 ENSHBUG00000009522 ENSHBUG00000009483 Lyretail cichlid MODERN SPECIES 322 zbtb22b (ENSNBRG00000018972) #36 ENSNBRG00000018993 ENSNBRG00000019004 daxx (ENSNBRG00000019025) ENSNBRG00000019042 #37 ENSNBRG00000019055 ENSNBRG00000019319 ENSNBRG00000020204 ENSNBRG00000020223 ENSNBRG00000020234 psmb8a (ENSNBRG00000020243) #16 psmb13a (ENSNBRG00000020297) psmb12 (ENSNBRG00000020575) psmb9a (ENSNBRG00000020771) #18 tap2a (ENSNBRG00000021055) brd2a (ENSNBRG00000021104) #22 hsd17b8 (ENSNBRG00000021387) #27 col11a2 (ENSNBRG00000021434) #24 rxrba (ENSNBRG00000021554) ##25 ENSNBRG00000021631 ENSNBRG00000021842 Pomacentridae ANCESTRAL SPECIES 88 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT01100000263475.g.b.i.b.b.a.a.p.a.a.a ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A.f ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00940000165419.b ENSGT00940000160112 ENSGT00390000009895 ENSGT00940000177479 ENSGT00940000167560 ENSGT00950000182907.a.a.ic.a ENSGT00530000063760.b.g.b ENSGT00970000193390.c.a.b.u.b ENSGT00940000168606 Bicolor damselfish MODERN SPECIES 2098 daxx (ENSSPAG00000020760) ENSSPAG00000020728 #37 ENSSPAG00000020718 ENSSPAG00000020714 ENSSPAG00000017254 psmb8a (ENSSPAG00000016903) #16 psmb13a (ENSSPAG00000016895) psmb12 (ENSSPAG00000016888) psmb9a (ENSSPAG00000016695) #18 tap2a (ENSSPAG00000016670) brd2a (ENSSPAG00000016605) #22 Pomacentridae_A ANCESTRAL SPECIES 73 ENSGT00390000005284.a ENSGT00940000154370.c.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.l.c.a.a ENSGT01100000263475.g.b.i.b.b.a.a.p.a.a.a ENSGT00940000157293.e #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A.f ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00940000165419.b ENSGT00940000160112 ENSGT00390000009895 ENSGT00940000167560 ENSGT00950000182907.a.a.ic.a ENSGT00530000063760.b.g.b ENSGT00970000193390.c.a.b.u.b ENSGT00940000168606 ENSGT00550000075028 Amphiprion ANCESTRAL SPECIES 107 ENSGT00940000165364.a.b ENSGT00390000015391 ENSGT00390000005284.a ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263475.g.b.i.b.b.a.a.p.a.a.a ENSGT00940000157293.e #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000178473 ENSGT00940000159762 #24 ENSGT00940000159208.A.f ##25 ENSGT01100000263475.g.b.i.b.b.a.b.a.b.a.a.b ENSGT01100000263475.g.b.i.b.b.a.b.a.b.b ENSGT00940000160076 #26 ENSGT00530000064569.a.c ENSGT00940000165419.b ENSGT00940000160112 ENSGT00390000009895 ENSGT00940000167560 ENSGT00950000182907.a.a.ic.a ENSGT00530000063760.b.g.b ENSGT00970000193390.c.a.b.u.b.b Clown anemonefish MODERN SPECIES 2524 ENSAOCG00000004438 ENSAOCG00000000161 psmb8a (ENSAOCG00000004464) #16 psmb13a (ENSAOCG00000004660) psmb12 (ENSAOCG00000000177) psmb9a (ENSAOCG00000000185) #18 tap2a (ENSAOCG00000004762) hsd17b8 (ENSAOCG00000004792) #27 brd2a (ENSAOCG00000004842) #22 ENSAOCG00000004863 col11a2 (ENSAOCG00000004956) #24 rxrba (ENSAOCG00000005008) ##25 ENSAOCG00000005273 pygl (ENSAOCG00000005360) ENSAOCG00000000251 NIN (ENSAOCG00000005435) sav1 (ENSAOCG00000005468) ENSAOCG00000005477 Orange clownfish MODERN SPECIES 8 ENSAPEG00000014834 FLOT1 (ENSAPEG00000014780) znf384a (ENSAPEG00000014757) kifc1 (ENSAPEG00000014745) zbtb22b (ENSAPEG00000014716) #36 daxx (ENSAPEG00000014704) ENSAPEG00000014653 #37 ENSAPEG00000014633 psmb8a (ENSAPEG00000014612) #16 psmb13a (ENSAPEG00000014602) psmb12 (ENSAPEG00000014587) psmb9a (ENSAPEG00000014578) #18 tap2a (ENSAPEG00000014527) ENSAPEG00000014499 ENSAPEG00000014487 brd2a (ENSAPEG00000014443) #22 hsd17b8 (ENSAPEG00000014330) #27 col11a2 (ENSAPEG00000014106) #24 rxrba (ENSAPEG00000014002) ##25 ENSAPEG00000012709 ENSAPEG00000012412 ENSAPEG00000012379 ENSAPEG00000012258 ENSAPEG00000012221 ENSAPEG00000012175 ENSAPEG00000012127 ENSAPEG00000012113 ENSAPEG00000012104 slc39a7 (ENSAPEG00000012091) #26 ENSAPEG00000012074 ENSAPEG00000012063 Spiny chromis DUPLICATION Spiny chromis MODERN SPECIES 1275 ENSAPOG00000011746 psmb8a (ENSAPOG00000011707) #16 psmb13a (ENSAPOG00000011687) psmb12 (ENSAPOG00000011668) tap2a (ENSAPOG00000011646) brd2a (ENSAPOG00000011383) #22 hsd17b8 (ENSAPOG00000011310) #27 col11a2 (ENSAPOG00000011284) #24 rxrba (ENSAPOG00000011036) ##25 Spiny chromis MODERN SPECIES 3566 brd2a (ENSAPOG00000006734) #22 Pinecone sodierfish MODERN SPECIES 2 ENSMMDG00005010100 ENSMMDG00005009964 ENSMMDG00005009475 ENSMMDG00005009044 ENSMMDG00005009032 ENSMMDG00005008992 ENSMMDG00005008986 ENSMMDG00005008878 ENSMMDG00005008763 ENSMMDG00005008757 psmb8a (ENSMMDG00005008752) #16 psmb13a (ENSMMDG00005008749) psmb12 (ENSMMDG00005008743) psmb9a (ENSMMDG00005008741) #18 tap2a (ENSMMDG00005007594) brd2a (ENSMMDG00005007560) #22 ENSMMDG00005007556 hsd17b8 (ENSMMDG00005007551) #27 ENSMMDG00005007540 #24 ENSMMDG00005007535 #24 rxrba (ENSMMDG00005007141) ##25 slc39a7 (ENSMMDG00005007129) #26 ENSMMDG00005007122 ENSMMDG00005007111 si:dkey-211g8.1 (ENSMMDG00005007107) ENSMMDG00005007104 ENSMMDG00005007100 necap1 (ENSMMDG00005007098) epn1b (ENSMMDG00005007097) si:ch211-232m10.6 (ENSMMDG00005007095) rcvrn3 (ENSMMDG00005007094) Cod MODERN SPECIES 14 ENSGMOG00000025307 ENSGMOG00000023965 ENSGMOG00000022674 ENSGMOG00000026579 ENSGMOG00000033871 ENSGMOG00000034716 ENSGMOG00000026571 ENSGMOG00000023973 ENSGMOG00000023596 ENSGMOG00000035573 ENSGMOG00000031534 ENSGMOG00000024348 ENSGMOG00000023818 ENSGMOG00000023365 ENSGMOG00000032068 brd2a (ENSGMOG00000002616) #22 hsd17b8 (ENSGMOG00000004151) #27 col11a2 (ENSGMOG00000002476) #24 ENSGMOG00000028048 rxrba (ENSGMOG00000010416) ##25 ENSGMOG00000027323 ENSGMOG00000016677 ENSGMOG00000024802 ENSGMOG00000029568 ENSGMOG00000027287 ENSGMOG00000028645 #26 ENSGMOG00000004372 pdia8 (ENSGMOG00000004407) ENSGMOG00000025290 ints3 (ENSGMOG00000004467) ENSGMOG00000036943 Protacanthopterygii ANCESTRAL SPECIES ENSGT00560000077232.A.b ENSGT00940000156904.a.a ENSGT00940000173076 ENSGT00940000161735 ENSGT00940000160991.a #36 ENSGT00390000009448 ENSGT00940000159200 #37 ENSGT01100000263531.G.m.a ENSGT01100000263475.g.b ENSGT01100000263531.G.m.b.b ENSGT00940000157293 #16 ENSGT00940000165504 ENSGT00940000165375 ENSGT00940000159897 #18 ENSGT00940000155431.b ENSGT00940000153385.b.a.b.fd.a #22 ENSGT00940000160668 #27 ENSGT00940000159762 #24 ENSGT00940000159208.A ##25 ENSGT00530000064569.a ENSGT00940000160076 #26 ENSGT00940000161022 #28 ENSGT00390000012691 #31 ENSGT00390000008815 #30 ENSGT01030000234974 ENSGT00940000160798 ENSGT00940000155188.A ENSGT00940000180480 ENSGT00940000155565.b ENSGT00940000161047 ENSGT00940000165771 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 93 ENSGT00940000156904.a.a.n ENSGT00940000161735 ENSGT00940000160991.a.n.a #36 ENSGT00390000009448.t ENSGT00940000159200.e #37 ENSGT01100000263531.G.m.b.b ENSGT01100000263531.G.m.a.b.b.b ENSGT00940000157293.`b.b #16 ENSGT00940000165504.s ENSGT00940000165375.a ENSGT00940000159897.n.b #18 ENSGT00940000155431.b.k.a ENSGT00940000157293.ab #16 ENSGT00940000159897.n.a #18 ENSGT00940000155431.b.k.b ENSGT00940000153385.b.a.b.fd.a.g #22 ENSGT00940000159762.ob #24 ENSGT01100000263531.G.m.a.b.b.a ENSGT00940000157293.`b.a #16 ENSGT00940000165504.t ENSGT00940000165375.b ENSGT00940000159897.m #18 ENSGT00940000155431.b.l ENSGT00940000153385.b.a.b.fd.a.h #22 ENSGT00940000160668 #27 ENSGT00940000159762.nb.b.b #24 ENSGT00940000159208.A.d ##25 ENSGT00530000064569.a ENSGT00940000160076.g #26 ENSGT01100000263531.G.m.b.a.b ENSGT00940000161022.n #28 Salmoninae_a ANCESTRAL SPECIES 5 ENSGT00940000161735 ENSGT00940000160991.a.n.a #36 ENSGT00390000009448.t ENSGT00940000159200.e #37 ENSGT01100000263531.G.m.b.b ENSGT01100000263531.G.m.a.b.b.b ENSGT01100000263531.G.m.b.a.a ENSGT00940000157293.`b.b #16 ENSGT00940000165504.s ENSGT00940000165375.a ENSGT00940000159897.n.b #18 ENSGT00940000155431.b.k.a ENSGT00940000157293.ab #16 ENSGT00940000159897.n.a #18 ENSGT00940000155431.b.k.b ENSGT00940000153385.b.a.b.fd.a.g #22 ENSGT00990000212860 ENSGT00940000159762.nb.b.a #24 ENSGT00940000159208.A.c ##25 ENSGT00940000160076.h #26 ENSGT00940000161022.m #28 ENSGT00390000012691.i.b #31 ENSGT00390000008815.o #30 ENSGT01030000234974.c ENSGT00940000160798.a ENSGT00940000155188.A.g.b ENSGT00940000180480.b ENSGT00940000155565.b.c ENSGT00940000161047.f ENSGT01100000263514.B.`b ENSGT00980000199469.c.a.a Oncorhynchus ANCESTRAL SPECIES 16 ENSGT00390000015391.d ENSGT00390000005284.a.g ENSGT00940000154370.d.b.c.a ENSGT00560000077232.A.b.o.a ENSGT00940000156904.a.a.n ENSGT00940000161735 ENSGT00940000160991.a.n.a #36 ENSGT00390000009448.t ENSGT00940000159200.e #37 ENSGT01100000263531.G.m.a.b.b.b ENSGT00940000157293.`b.b #16 ENSGT00940000165504.s ENSGT00940000165375.a ENSGT00940000159897.n.a #18 ENSGT00940000155431.b.k.b ENSGT00940000153385.b.a.b.fd.a.g #22 ENSGT00990000212860 ENSGT00940000159762.nb.b.a #24 ENSGT00940000159208.A.c ##25 ENSGT00940000160076.h #26 ENSGT00940000161022.m #28 ENSGT00390000012691.i.b #31 ENSGT00390000008815.o #30 ENSGT01030000234974.c ENSGT00940000160798.a ENSGT00940000155188.A.g.b ENSGT00940000180480.a ENSGT00940000155565.b.c ENSGT00940000161047.f ENSGT01100000263514.B.`b ENSGT00980000199469.c.a.a Oncorhynchus_a ANCESTRAL SPECIES 6 ENSGT00940000154370.d.b.c.a ENSGT00560000077232.A.b.o.a ENSGT00940000156904.a.a.n ENSGT00940000161735 ENSGT00940000160991.a.m #36 ENSGT00940000167703 ENSGT00940000160991.a.n.a #36 ENSGT00390000009448.t ENSGT00940000159200.e #37 ENSGT01100000263531.G.m.a.b.b.b ENSGT00940000157293.`b.b #16 ENSGT00940000165504.s ENSGT00940000165375.a ENSGT00940000159897.n.a #18 ENSGT00940000155431.b.k.b ENSGT00940000153385.b.a.b.fd.a.g #22 ENSGT00990000212860 ENSGT00940000159762.nb.b.a #24 ENSGT00940000159208.A.c ##25 ENSGT00940000160076.h #26 ENSGT00940000161022.m #28 ENSGT00390000012691.i.b #31 ENSGT00390000008815.o #30 ENSGT01030000234974.c ENSGT00940000160798.a ENSGT00940000155188.A.g.b ENSGT00940000180480.a ENSGT00940000155565.b.c ENSGT00940000161047.f ENSGT01100000263514.B.`b ENSGT00980000199469.c.a.a Chinook salmon MODERN SPECIES 4 ENSOTSG00005038841 ENSOTSG00005038839 ENSOTSG00005038511 znf384a (ENSOTSG00005038507) kifc1 (ENSOTSG00005038506) ENSOTSG00005038504 #36 zbtb22b (ENSOTSG00005038503) #36 daxx (ENSOTSG00005038502) ENSOTSG00005038501 #37 ENSOTSG00005038500 psmb8a (ENSOTSG00005038499) #16 psmb13a (ENSOTSG00005038489) psmb12 (ENSOTSG00005038477) psmb9a (ENSOTSG00005038475) #18 tap2a (ENSOTSG00005038182) brd2a (ENSOTSG00005038169) #22 ENSOTSG00005038167 col11a2 (ENSOTSG00005038152) #24 rxrba (ENSOTSG00005036537) ##25 slc39a7 (ENSOTSG00005036523) #26 RING1 (ENSOTSG00005036521) #28 rps18 (ENSOTSG00005036516) #31 VPS52 (ENSOTSG00005036444) #30 lgals17 (ENSOTSG00005036443) ENSOTSG00005036440 ENSOTSG00005036439 ENSOTSG00005036437 psmb10 (ENSOTSG00005036432) ENSOTSG00005036421 ENSOTSG00005036420 ENSOTSG00005036415 Coho salmon MODERN SPECIES 8 ENSOKIG00005048462 ENSOKIG00005048444 FLOT1 (ENSOKIG00005048402) znf384a (ENSOKIG00005048386) ENSOKIG00005048330 zbtb22b (ENSOKIG00005048313) #36 daxx (ENSOKIG00005048308) ENSOKIG00005048300 #37 ENSOKIG00005048298 ENSOKIG00005048286 psmb8a (ENSOKIG00005048281) #16 psmb13a (ENSOKIG00005048267) psmb12 (ENSOKIG00005048235) psmb9a (ENSOKIG00005048222) #18 tap2a (ENSOKIG00005048156) brd2a (ENSOKIG00005048135) #22 ENSOKIG00005048123 col11a2 (ENSOKIG00005047305) #24 rxrba (ENSOKIG00005046964) ##25 slc39a7 (ENSOKIG00005046931) #26 RING1 (ENSOKIG00005046917) #28 rps18 (ENSOKIG00005046892) #31 VPS52 (ENSOKIG00005046823) #30 ENSOKIG00005046802 ENSOKIG00005046755 ENSOKIG00005046747 ENSOKIG00005046743 ENSOKIG00005046730 PSMB10 (ENSOKIG00005046699) ENSOKIG00005046640 ENSOKIG00005046622 Rainbow trout MODERN SPECIES 9 ENSOMYG00000007164 ENSOMYG00000007427 znf384a (ENSOMYG00000007681) kifc1 (ENSOMYG00000007756) zbtb22b (ENSOMYG00000007787) #36 daxx (ENSOMYG00000007830) tapbp.1 (ENSOMYG00000007865) #37 ENSOMYG00000077564 OnmyUAA-OSU (ENSOMYG00000007954) ENSOMYG00000053559 PSMB10 (ENSOMYG00000008302) psb9 (ENSOMYG00000008514) psmb9a (ENSOMYG00000008548) #18 tap2a (ENSOMYG00000008958) ENSOMYG00000009982 #16 brd2a (ENSOMYG00000010084) #22 ENSOMYG00000010132 col11a2 (ENSOMYG00000011009) #24 rxrba (ENSOMYG00000015331) ##25 ENSOMYG00000015468 ENSOMYG00000015494 #28 ENSOMYG00000015513 #31 ENSOMYG00000015575 #30 ENSOMYG00000015725 ENSOMYG00000015753 ENSOMYG00000015865 ENSOMYG00000015832 ENSOMYG00000015921 ENSOMYG00000015999 ENSOMYG00000016010 ENSOMYG00000016039 Salmo ANCESTRAL SPECIES 40 ENSGT00940000154370.d.a.b ENSGT00940000154370.d.b.c.a ENSGT00560000077232.A.b.o.a ENSGT00940000156904.a.a.n ENSGT00940000173076 ENSGT00940000160991.a.n.a #36 ENSGT00390000009448.t ENSGT00940000159200.e #37 ENSGT01100000263531.G.m.b.b ENSGT01100000263531.G.m.b.a.a ENSGT00940000157293.`b.b #16 ENSGT00940000165504.s ENSGT00940000165375.b.b ENSGT00940000159897.n.a #18 ENSGT00940000155431.b.k.b ENSGT00940000153385.b.a.b.fd.a.g #22 ENSGT00990000212860 ENSGT00940000159762.nb.b.a #24 ENSGT00940000159208.A.c ##25 ENSGT00940000160076.h #26 ENSGT00940000163299.B.b.b.f.a.b ENSGT00940000161022.m #28 ENSGT00390000012691.i.b #31 ENSGT00390000008815.o #30 ENSGT01030000234974.c ENSGT01100000263531.A.tb.b.d ENSGT00940000160798.a ENSGT00940000155188.A.g.b ENSGT00940000180480.b ENSGT00940000155565.b.c ENSGT00940000161047.f River trout MODERN SPECIES 27 ENSSTUG00000032211 znf384a (ENSSTUG00000032242) ENSSTUG00000032276 zbtb22b (ENSSTUG00000032701) #36 daxx (ENSSTUG00000032708) ENSSTUG00000032719 #37 ENSSTUG00000032746 ENSSTUG00000032773 psmb8a (ENSSTUG00000032797) #16 psmb13a (ENSSTUG00000032818) psmb12 (ENSSTUG00000032883) ENSSTUG00000032935 psmb9a (ENSSTUG00000032944) #18 tap2a (ENSSTUG00000032985) ENSSTUG00000033339 brd2a (ENSSTUG00000033342) #22 ENSSTUG00000033349 col11a2 (ENSSTUG00000033381) #24 rxrba (ENSSTUG00000034427) ##25 slc39a7 (ENSSTUG00000035250) #26 ENSSTUG00000035296 RING1 (ENSSTUG00000035303) #28 rps18 (ENSSTUG00000035340) #31 VPS52 (ENSSTUG00000035423) #30 lgals17 (ENSSTUG00000035581) ENSSTUG00000035610 ENSSTUG00000035624 ENSSTUG00000035732 ENSSTUG00000035743 ENSSTUG00000035754 psmb10 (ENSSTUG00000035804) Atlantic salmon MODERN SPECIES 19 TBB5 (ENSSSAG00000077200) znf384a (ENSSSAG00000110443) ENSSSAG00000077337 zbtb22b (ENSSSAG00000077397) #36 daxx (ENSSSAG00000077402) ENSSSAG00000077407 #37 ENSSSAG00000077419 ENSSSAG00000099702 PSMB8a (ENSSSAG00000085574) #16 psmb13a (ENSSSAG00000077561) psmb12 (ENSSSAG00000077444) ENSSSAG00000105414 psmb9a (ENSSSAG00000096214) #18 abcb3 (ENSSSAG00000042201) PSB8 (ENSSSAG00000115503) #16 brd2a (ENSSSAG00000077713) #22 ENSSSAG00000077736 col11a2 (ENSSSAG00000077772) #24 ENSSSAG00000118876 rxrba (ENSSSAG00000043371) ##25 ENSSSAG00000117720 #26 ENSSSAG00000088289 ENSSSAG00000078608 #28 ENSSSAG00000078619 #31 vps52 (ENSSSAG00000078638) #30 ENSSSAG00000078726 ENSSSAG00000122113 ENSSSAG00000078746 ENSSSAG00000078766 ENSSSAG00000078775 ENSSSAG00000078781 Huchen MODERN SPECIES 2572 brd2a (ENSHHUG00000052647) #22 hsd17b8 (ENSHHUG00000052650) #27 col11a2 (ENSHHUG00000052652) #24 ENSHHUG00000052666 #24 rxrba (ENSHHUG00000052669) ##25 slc39a7 (ENSHHUG00000052675) #26 RING1 (ENSHHUG00000052676) #28 rps18 (ENSHHUG00000000045) #31 VPS52 (ENSHHUG00000000277) #30 Salmoninae ANCESTRAL SPECIES 93 ENSGT00940000165504.s ENSGT00940000165375.a ENSGT00940000159897.n.b #18 ENSGT00940000155431.b.k.a ENSGT00940000157293.ab #16 ENSGT00940000159897.n.a #18 ENSGT00940000155431.b.k.b ENSGT00940000153385.b.a.b.fd.a.g #22 ENSGT00940000159762.ob #24 ENSGT01100000263531.G.m.a.b.b.a ENSGT00940000157293.`b.a #16 ENSGT00940000165504.t ENSGT00940000165375.b ENSGT00940000159897.m #18 ENSGT00940000155431.b.l ENSGT00940000153385.b.a.b.fd.a.h #22 ENSGT00940000160668 #27 ENSGT00940000159762.nb.b.b #24 ENSGT00940000159208.A.d ##25 ENSGT00530000064569.a ENSGT00940000160076.g #26 ENSGT01100000263531.G.m.b.a.b ENSGT00940000161022.n #28 ENSGT00390000012691.i.a #31 ENSGT00390000008815.p #30 ENSGT01030000234974.d ENSGT00940000160798.b ENSGT00940000155188.A.g.a ENSGT00940000155565.b.d ENSGT00940000161047.e ENSGT01100000263514.B.ab Salmoninae_a ANCESTRAL SPECIES 48 ENSGT00940000154370.d.a.a ENSGT00560000077232.A.b.o.b ENSGT00940000156904.a.a.m ENSGT00940000164565 ENSGT00940000160991.a.n.b #36 ENSGT00390000009448.s ENSGT00940000159200.f #37 ENSGT01100000263531.G.m.a.b.a ENSGT01100000263475.g.b ENSGT01100000263531.G.m.a.b.b.a ENSGT00940000157293.`b.a #16 ENSGT00940000165504.t ENSGT00940000165375.b ENSGT00940000159897.m #18 ENSGT00940000155431.b.l ENSGT00940000153385.b.a.b.fd.a.h #22 ENSGT00940000160668 #27 ENSGT00940000159762.nb.b.b #24 ENSGT00940000159208.A.d ##25 ENSGT00530000064569.a ENSGT00940000160076.g #26 ENSGT01100000263531.G.m.b.a.b ENSGT00940000161022.n #28 ENSGT00390000012691.i.a #31 ENSGT00390000008815.p #30 ENSGT01030000234974.d ENSGT00940000160798.b ENSGT00940000155188.A.g.a ENSGT00940000155565.b.d ENSGT00940000161047.e ENSGT01100000263514.B.ab Salmo ANCESTRAL SPECIES 2 ENSGT00940000154370.d.a.a ENSGT00560000077232.A.b.o.b ENSGT00940000156904.a.a.m ENSGT00940000164565.a ENSGT00940000160991.a.n.b #36 ENSGT00390000009448.s ENSGT00940000159200.f #37 ENSGT01100000263531.G.m.a.b.a ENSGT00940000157293.`b.a #16 ENSGT00940000165504.t ENSGT00940000165375.b.a ENSGT00940000159897.n.b.a #18 ENSGT00940000155431.b.k.a ENSGT00940000157293.ab #16 ENSGT00940000155431.b.l ENSGT00940000153385.b.a.b.fd.a.h #22 ENSGT00940000160668 #27 ENSGT00940000159762.nb.b.b #24 ENSGT00940000159208.A.d ##25 ENSGT00940000160076.g #26 ENSGT01100000263531.G.m.b.a.b ENSGT00940000161022.n #28 ENSGT00390000012691.i.a #31 ENSGT00390000008815.p #30 ENSGT01030000234974.d ENSGT00940000160798.b ENSGT00940000155188.A.g.a ENSGT00940000155565.b.d ENSGT00940000161047.e ENSGT01100000263514.B.ab ENSGT00940000165771 Atlantic salmon MODERN SPECIES 5 ENSSSAG00000039288 tbb5 (ENSSSAG00000039318) ENSSSAG00000039396 znf384a (ENSSSAG00000077314) ENSSSAG00000040389 zbtb22b (ENSSSAG00000040686) #36 DAXX (ENSSSAG00000040701) ENSSSAG00000040723 #37 ENSSSAG00000040874 ENSSSAG00000106198 ENSSSAG00000113532 psmb8b (ENSSSAG00000041842) #16 psmb12 (ENSSSAG00000041924) PSMB10 (ENSSSAG00000085704) tap2a (ENSSSAG00000093386) brd2a (ENSSSAG00000042614) #22 HSD17B8 (ENSSSAG00000042779) #27 col11a2 (ENSSSAG00000042837) #24 rxrba (ENSSSAG00000098227) ##25 ENSSSAG00000085030 ENSSSAG00000048818 ENSSSAG00000094619 ENSSSAG00000110026 ENSSSAG00000121069 ke4 (ENSSSAG00000048841) #26 ENSSSAG00000048859 ENSSSAG00000048880 #28 ENSSSAG00000048938 ENSSSAG00000048981 ENSSSAG00000049458 ENSSSAG00000049471 River trout MODERN SPECIES 29 ENSSTUG00000022425 ENSSTUG00000022308 znf384a (ENSSTUG00000022253) ENSSTUG00000022192 zbtb22b (ENSSTUG00000022185) #36 daxx (ENSSTUG00000022170) ENSSTUG00000022129 #37 ENSSTUG00000022121 ENSSTUG00000021982 psmb8a (ENSSTUG00000021968) #16 psmb13a (ENSSTUG00000021918) psmb12 (ENSSTUG00000021891) psmb9a (ENSSTUG00000021885) #18 tap2a (ENSSTUG00000033121) ENSSTUG00000033105 brd2a (ENSSTUG00000033063) #22 hsd17b8 (ENSSTUG00000033017) #27 col11a2 (ENSSTUG00000032779) #24 rxrba (ENSSTUG00000032635) ##25 ENSSTUG00000032628 ENSSTUG00000032547 ENSSTUG00000032445 slc39a7 (ENSSTUG00000032339) #26 ENSSTUG00000032313 ENSSTUG00000032288 #28 rps18 (ENSSTUG00000032263) #31 ENSSTUG00000031954 #30 lgals17 (ENSSTUG00000031937) ENSSTUG00000031857 ENSSTUG00000031830 ENSSTUG00000031806 Oncorhynchus ANCESTRAL SPECIES 40 ENSGT00390000015391.c ENSGT00390000005284.a.h ENSGT00940000154370.d.a.a ENSGT00560000077232.A.b.o.b ENSGT00940000156904.a.a.m ENSGT00940000160991.a.n.b #36 ENSGT00390000009448.s ENSGT00940000159200.f #37 ENSGT01100000263531.G.m.a.b.a ENSGT01100000263475.g.b ENSGT00940000157293.`b.a #16 ENSGT00940000165504.t ENSGT00940000165375.b ENSGT00940000159897.m #18 ENSGT00940000155431.b.l ENSGT00940000153385.b.a.b.fd.a.h #22 ENSGT00940000160668 #27 ENSGT00940000159762.nb.b.b #24 ENSGT00940000159208.A.d ##25 ENSGT00530000064569.a ENSGT00940000160076.g #26 ENSGT01100000263531.G.m.b.a.b ENSGT00940000161022.n #28 ENSGT00390000012691.i.a #31 ENSGT00390000008815.p #30 ENSGT01030000234974.d ENSGT00940000160798.b ENSGT00940000155188.A.g.a ENSGT00940000155565.b.d ENSGT00940000161047.e ENSGT01100000263514.B.ab Oncorhynchus_a ANCESTRAL SPECIES 45 ENSGT00390000015391.c ENSGT00390000005284.a.h ENSGT00940000154370.d.a.a ENSGT00560000077232.A.b.o.b ENSGT00940000156904.a.a.m ENSGT00940000160991.a.n.b #36 ENSGT00390000009448.s ENSGT00940000159200.f #37 ENSGT01100000263531.G.m.a.b.a ENSGT01100000263475.g.b ENSGT00940000157293.`b.a #16 ENSGT00940000165504.t ENSGT00940000165375.b ENSGT00940000159897.m #18 ENSGT00940000155431.b.l ENSGT00940000153385.b.a.b.fd.a.h #22 ENSGT00940000160668 #27 ENSGT00940000159762.nb.b.b #24 ENSGT00940000159208.A.d ##25 ENSGT00530000064569.a ENSGT00940000160076.g #26 ENSGT01100000263531.G.m.b.a.b ENSGT00940000161022.n #28 ENSGT00390000012691.j #31 ENSGT00390000008815.p #30 ENSGT01030000234974.d ENSGT00940000160798.b ENSGT00940000155188.A.h ENSGT00940000155565.b.d ENSGT00940000161047.e ENSGT01100000263514.B.ab Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 45 ENSOTSG00005045406 FLOT1 (ENSOTSG00005045408) znf384a (ENSOTSG00005045423) zbtb22b (ENSOTSG00005045424) #36 daxx (ENSOTSG00005045425) ENSOTSG00005045426 #37 ENSOTSG00005045427 ENSOTSG00005045428 ENSOTSG00005045429 ENSOTSG00005045430 psmb8a (ENSOTSG00005045431) #16 psmb13a (ENSOTSG00005045432) psmb12 (ENSOTSG00005045433) psmb9a (ENSOTSG00005045435) #18 tap2a (ENSOTSG00005045436) brd2a (ENSOTSG00005045452) #22 hsd17b8 (ENSOTSG00005045453) #27 col11a2 (ENSOTSG00005045454) #24 ENSOTSG00005045464 rxrba (ENSOTSG00005045466) ##25 ENSOTSG00005045549 slc39a7 (ENSOTSG00005045550) #26 ENSOTSG00005045552 ENSOTSG00005045554 #28 rps18 (ENSOTSG00005045555) #31 ENSOTSG00005045556 #30 lgals17 (ENSOTSG00005045557) ENSOTSG00005045558 ENSOTSG00005045559 ENSOTSG00005045560 psmb10 (ENSOTSG00005045561) Chinook salmon MODERN SPECIES 24 ENSOTSG00005023306 ENSOTSG00005023208 znf384a (ENSOTSG00005023207) zbtb22b (ENSOTSG00005023206) #36 daxx (ENSOTSG00005023205) ENSOTSG00005023204 #37 ENSOTSG00005023201 ENSOTSG00005023200 ENSOTSG00005023199 ENSOTSG00005023198 psmb8a (ENSOTSG00005023197) #16 psmb13a (ENSOTSG00005023196) psmb12 (ENSOTSG00005023194) psmb9a (ENSOTSG00005023193) #18 tap2a (ENSOTSG00005023164) brd2a (ENSOTSG00005023163) #22 hsd17b8 (ENSOTSG00005023162) #27 col11a2 (ENSOTSG00005022918) #24 rxrba (ENSOTSG00005021733) ##25 slc39a7 (ENSOTSG00005021727) #26 ENSOTSG00005021725 ENSOTSG00005021723 #28 rps18 (ENSOTSG00005021721) #31 ENSOTSG00005021150 #30 lgals17 (ENSOTSG00005021142) ENSOTSG00005021139 ENSOTSG00005021135 ENSOTSG00005021133 psmb10 (ENSOTSG00005021055) ENSOTSG00005021049 ENSOTSG00005021046 Coho salmon MODERN SPECIES 5 ENSOKIG00005021949 ENSOKIG00005021956 FLOT1 (ENSOKIG00005021982) znf384a (ENSOKIG00005022098) zbtb22b (ENSOKIG00005022131) #36 daxx (ENSOKIG00005022143) ENSOKIG00005022169 #37 ENSOKIG00005022206 ENSOKIG00005022252 ENSOKIG00005022258 psmb8a (ENSOKIG00005022271) #16 psmb13a (ENSOKIG00005022292) psmb12 (ENSOKIG00005022395) psmb9a (ENSOKIG00005022436) #18 tap2a (ENSOKIG00005022488) brd2a (ENSOKIG00005022920) #22 hsd17b8 (ENSOKIG00005022958) #27 col11a2 (ENSOKIG00005023009) #24 rxrba (ENSOKIG00005023136) ##25 ENSOKIG00005023567 SLC39A7 (ENSOKIG00005023612) #26 ENSOKIG00005023631 RING1 (ENSOKIG00005023657) #28 RPS18 (ENSOKIG00005023665) #31 VPS52 (ENSOKIG00005023691) #30 lgals17 (ENSOKIG00005023966) ENSOKIG00005024019 ENSOKIG00005024076 ENSOKIG00005024100 psmb10 (ENSOKIG00005024141) selenoh (ENSOKIG00005004237) Rainbow trout MODERN SPECIES 24 ENSOMYG00000026058 ENSOMYG00000026021 ENSOMYG00000049286 pvrl2l (ENSOMYG00000025991) ENSOMYG00000025977 ENSOMYG00000025969 ENSOMYG00000060737 ENSOMYG00000025700 znf384a (ENSOMYG00000025586) zbtb22b (ENSOMYG00000025575) #36 daxx (ENSOMYG00000025553) ENSOMYG00000025425 #37 Onmy-UEA (ENSOMYG00000025251) psmb12 (ENSOMYG00000025035) tap2a (ENSOMYG00000024096) brd2a (ENSOMYG00000024994) #22 hsd17b8 (ENSOMYG00000024910) #27 col11a2 (ENSOMYG00000024581) #24 rxrba (ENSOMYG00000023835) ##25 ENSOMYG00000023726 ENSOMYG00000074310 ENSOMYG00000023665 #26 ENSOMYG00000023607 ENSOMYG00000023551 #28 ENSOMYG00000023520 #31 ENSOMYG00000023396 #30 ENSOMYG00000023348 ENSOMYG00000023292 ENSOMYG00000056776 ENSOMYG00000023218 ENSOMYG00000023189 Huchen MODERN SPECIES 428 psmb8a (ENSHHUG00000013034) #16 psmb13a (ENSHHUG00000012947) psmb12 (ENSHHUG00000012923) psmb9a (ENSHHUG00000012814) #18 tap2a (ENSHHUG00000012594) brd2a (ENSHHUG00000012576) #22 hsd17b8 (ENSHHUG00000012541) #27 ENSHHUG00000012537 #24 ENSHHUG00000012532 #24 ENSHHUG00000012525 #24 ENSHHUG00000012507 ENSHHUG00000012500 rxrba (ENSHHUG00000012390) ##25 ENSHHUG00000012376 ENSHHUG00000012361 ENSHHUG00000012353 slc39a7 (ENSHHUG00000012343) #26 ENSHHUG00000012337 ENSHHUG00000012332 #28 rps18 (ENSHHUG00000012176) #31 lgals17 (ENSHHUG00000012168) Northern pike MODERN SPECIES 9 ENSELUG00000001299 ENSELUG00000019818 ENSELUG00000024866 ENSELUG00000001659 ENSELUG00000001658 ENSELUG00000029848 ENSELUG00000001661 psmb8a (ENSELUG00000023299) #16 psmb12 (ENSELUG00000019666) psmb9a (ENSELUG00000019630) #18 tap2a (ENSELUG00000019545) psmb13a (ENSELUG00000023395) ENSELUG00000001175 ENSELUG00000029247 ENSELUG00000032943 brd2a (ENSELUG00000019493) #22 col11a2 (ENSELUG00000019412) #24 rxrba (ENSELUG00000000816) ##25 slc39a7 (ENSELUG00000019100) #26 ENSELUG00000018996 RING1 (ENSELUG00000019062) #28 rps18 (ENSELUG00000018975) #31 VPS52 (ENSELUG00000018883) #30 ENSELUG00000018818 ENSELUG00000018802 ENSELUG00000018783 ENSELUG00000018710 ENSELUG00000018643 psb7 (ENSELUG00000028849) cenpa (ENSELUG00000034011) ENSELUG00000018499 Clupeocephala ANCESTRAL SPECIES 27 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198621 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165550.a.b.b ENSGT00940000155168.a.a ENSGT00940000156196.a ENSGT00940000161037 ENSGT00940000154222.d.a Otomorpha ANCESTRAL SPECIES 8 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198621 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313.ib ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000155168.a.a ENSGT00940000154222.d.a ENSGT00940000178392 ENSGT00390000001883 Clupeiformes ANCESTRAL SPECIES 79 ENSGT00940000155168.a.a ENSGT00940000165550.a.b.b ENSGT00940000155985 ENSGT00940000160242.a ENSGT00940000154337.a.a ENSGT00390000004145.a ENSGT00390000008096.C.a ENSGT00940000155660.b ENSGT00940000156439.d ENSGT00530000063609.b.w ENSGT00390000009313.ib ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000159023 #17 ENSGT00980000198621 ENSGT00940000166527 ENSGT00940000166061.b ENSGT00390000002634.a.e.d ENSGT00940000167370 ENSGT00950000183180.a.b ENSGT00940000158438.n ENSGT00940000154566 ENSGT00940000160567 ENSGT00940000159412 ENSGT00760000119652 ENSGT00730000111185.db.a ENSGT00940000159172 ENSGT00940000160276 Atlantic herring MODERN SPECIES 2 pard6ga (ENSCHAG00000007948) zgc:136493 (ENSCHAG00000007941) JARID2 (ENSCHAG00000007527) dtnbp1a (ENSCHAG00000007452) ENSCHAG00000007434 ENSCHAG00000007407 ENSCHAG00000007395 UBE2E2 (ENSCHAG00000007375) si:dkey-82o10.4 (ENSCHAG00000007368) ENSCHAG00000007288 ENSCHAG00000007270 PLCL2 (ENSCHAG00000007265) ENSCHAG00000007216 ENSCHAG00000007206 ENSCHAG00000007176 BRD2 (ENSCHAG00000006857) #22 ENSCHAG00000006649 #17 pbx2 (ENSCHAG00000006602) ENSCHAG00000006588 ENSCHAG00000006550 rgl2 (ENSCHAG00000006474) ENSCHAG00000006133 SYNGAP1 (ENSCHAG00000005164) smg5 (ENSCHAG00000002837) PAQR6 (ENSCHAG00000002634) ntrk1 (ENSCHAG00000002438) ENSCHAG00000002411 ENSCHAG00000002343 ENSCHAG00000009602 ENSCHAG00000009551 ENSCHAG00000009521 Denticle herring MODERN SPECIES 15 ATXN1 (ENSDCDG00000016999) ENSDCDG00000016998 ENSDCDG00000016996 septin7b (ENSDCDG00000015781) nr1d2a (ENSDCDG00000015704) ube2e1 (ENSDCDG00000015667) ZNF385D (ENSDCDG00000015654) rab5ab (ENSDCDG00000015630) ENSDCDG00000015616 PLCL2 (ENSDCDG00000015602) ENSDCDG00000015435 ENSDCDG00000015381 ENSDCDG00000015373 ENSDCDG00000015367 ENSDCDG00000015353 BRD2 (ENSDCDG00000015347) #22 ENSDCDG00000015303 #17 ENSDCDG00000015280 pbx2 (ENSDCDG00000015258) ENSDCDG00000015247 ENSDCDG00000015240 rgl2 (ENSDCDG00000015216) PHF1 (ENSDCDG00000015004) SYNGAP1 (ENSDCDG00000014494) smg5 (ENSDCDG00000014414) PAQR6 (ENSDCDG00000014390) ntrk1 (ENSDCDG00000014373) rbm8a (ENSDCDG00000014349) otud7b (ENSDCDG00000014335) mtmr11 (ENSDCDG00000014305) SV2A (ENSDCDG00000014031) Otophysi ANCESTRAL SPECIES 1 ENSGT00940000164651.a.a.d ENSGT00940000163195.A.c ENSGT00390000001883 ENSGT00940000178392 ENSGT00940000154222.d.a ENSGT00920000149145 ENSGT00390000018094.l ENSGT00940000155549.a.b ENSGT00940000154655.a.i.a ENSGT00940000155321.d.a ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198621 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313.ib.a ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000176137 ENSGT01100000263535.b.a.b.bb ENSGT00990000203527.a.a.b ENSGT01050000244814.a.a.b.b.b.a.a.d.a ENSGT00940000167735.a ENSGT00390000009936 ENSGT00940000160704.a.a ENSGT00390000013999 ENSGT00940000160467 Characiphysae ANCESTRAL SPECIES 37 ENSGT01090000260131 ENSGT00940000164651.a.a.d ENSGT00940000163195.A.c ENSGT00390000001883 ENSGT00940000178392 ENSGT00940000154222.d.a ENSGT00920000149145 ENSGT00390000018094.l ENSGT00940000155549.a.b.e.a ENSGT00940000154655.a.i.a ENSGT00940000155321.d.a ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313.ib.a ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000155168.a.a ENSGT00940000161037 ENSGT01100000263535.b.a.b.bb ENSGT00990000203527.a.a.b Channel catfish MODERN SPECIES 15 ENSIPUG00000005827 ica1 (ENSIPUG00000005789) mios (ENSIPUG00000005746) col28a1b (ENSIPUG00000005698) ENSIPUG00000005674 septin7b (ENSIPUG00000005643) slc25a32 (ENSIPUG00000005619) CTHRC1 (ENSIPUG00000005595) CSMD3 (ENSIPUG00000005406) eif3ha (ENSIPUG00000005370) rad21a (ENSIPUG00000005316) ext1a (ENSIPUG00000005297) ENSIPUG00000005288 pbx2 (ENSIPUG00000005246) ABCB2 (ENSIPUG00000005210) #17 BRD2 (ENSIPUG00000005161) #22 VMO1 (ENSIPUG00000005135) RFTN1 (ENSIPUG00000005084) ENSIPUG00000005071 plcl2 (ENSIPUG00000005047) ENSIPUG00000023470 satb1 (ENSIPUG00000023428) efhb (ENSIPUG00000023422) rab5ab (ENSIPUG00000023392) znf385d (ENSIPUG00000023386) ube2e2 (ENSIPUG00000023378) Nr1d2 (ENSIPUG00000023370) nek10 (ENSIPUG00000023337) ENSIPUG00000023320 ENSIPUG00000023311 ENSIPUG00000023307 Characiphysae_b ANCESTRAL SPECIES 37 ENSGT00940000161647 ENSGT01090000260131 ENSGT00940000164651.a.a.d ENSGT00390000001883 ENSGT00940000178392 ENSGT00940000154222.d.a ENSGT00920000149145 ENSGT00390000018094.l ENSGT00940000155549.a.b.e.a ENSGT00940000154655.a.i.a ENSGT00940000155321.d.a ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313.ib.a ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000155168.a.a ENSGT00940000161037 Electric eel MODERN SPECIES 182 ENSEEEG00000004685 septin7b (ENSEEEG00000003349) slc25a32b (ENSEEEG00000003328) CTHRC1 (ENSEEEG00000003327) ENSEEEG00000003326 CSMD3 (ENSEEEG00000003272) EIF3H (ENSEEEG00000003063) rad21a (ENSEEEG00000003022) ext1a (ENSEEEG00000003012) ENSEEEG00000003010 pbx2 (ENSEEEG00000003007) ENSEEEG00000002995 #17 brd2b (ENSEEEG00000002992) #22 ENSEEEG00000002985 ENSEEEG00000002981 ENSEEEG00000002642 PLCL2 (ENSEEEG00000002606) ENSEEEG00000002600 efhb (ENSEEEG00000002592) rab5ab (ENSEEEG00000002562) ZNF385D (ENSEEEG00000002547) ube2e2 (ENSEEEG00000002544) nr1d2a (ENSEEEG00000002541) NEK10 (ENSEEEG00000002522) Characoidei ANCESTRAL SPECIES 34 ENSGT00940000161647 ENSGT01090000260131 ENSGT00940000164651.a.a.d ENSGT00390000001883 ENSGT00940000178392 ENSGT00940000154222.d.a ENSGT00920000149145 ENSGT00390000018094.l ENSGT00940000155549.a.b.e.a ENSGT00940000154655.a.i.a ENSGT00940000155321.d.a ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313.ib.a ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a Mexicana tetra DUPLICATION Mexicana tetra MODERN SPECIES 9 mios (ENSAMXG00000024638) col28a1b (ENSAMXG00000024639) ENSAMXG00000024640 ENSAMXG00000024641 ENSAMXG00000038736 septin7b (ENSAMXG00000024643) slc25a32b (ENSAMXG00000005337) CTHRC1 (ENSAMXG00000039302) CSMD3 (ENSAMXG00000036946) eif3ha (ENSAMXG00000016937) rad21a (ENSAMXG00000016960) ext1a (ENSAMXG00000016992) pbx2 (ENSAMXG00000017025) ENSAMXG00000017049 ENSAMXG00000017074 #17 brd2b (ENSAMXG00000040055) #22 ENSAMXG00000017090 #22 ENSAMXG00000033156 ENSAMXG00000036168 ENSAMXG00000043461 ENSAMXG00000031919 PLCL2 (ENSAMXG00000025896) ENSAMXG00000043380 efhb (ENSAMXG00000015119) rab5ab (ENSAMXG00000035919) ZNF385D (ENSAMXG00000036149) SLC9A1 (ENSAMXG00000015012) fam110d (ENSAMXG00000003113) C1orf232 (ENSAMXG00000038974) hmgn2 (ENSAMXG00000032165) dhdds (ENSAMXG00000001697) Mexicana tetra MODERN SPECIES 9 col28a1b (ENSAMXG00000024639) ENSAMXG00000024640 ENSAMXG00000024641 ENSAMXG00000038736 septin7b (ENSAMXG00000024643) slc25a32b (ENSAMXG00000005337) CTHRC1 (ENSAMXG00000039302) CSMD3 (ENSAMXG00000036946) eif3ha (ENSAMXG00000016937) rad21a (ENSAMXG00000016960) ext1a (ENSAMXG00000016992) pbx2 (ENSAMXG00000017025) ENSAMXG00000017049 ENSAMXG00000017074 #17 brd2b (ENSAMXG00000040055) #22 ENSAMXG00000017090 #22 ENSAMXG00000033156 ENSAMXG00000036168 ENSAMXG00000043461 ENSAMXG00000031919 PLCL2 (ENSAMXG00000025896) ENSAMXG00000043380 efhb (ENSAMXG00000015119) rab5ab (ENSAMXG00000035919) ZNF385D (ENSAMXG00000036149) SLC9A1 (ENSAMXG00000015012) fam110d (ENSAMXG00000003113) C1orf232 (ENSAMXG00000038974) hmgn2 (ENSAMXG00000032165) dhdds (ENSAMXG00000001697) ENSAMXG00000039413 Red-bellied piranha MODERN SPECIES 302 ENSPNAG00000028867 pbx2 (ENSPNAG00000028911) ENSPNAG00000028983 ENSPNAG00000004990 #17 brd2b (ENSPNAG00000029401) #22 ENSPNAG00000029458 ENSPNAG00000005402 ENSPNAG00000004609 ENSPNAG00000029548 PLCL2 (ENSPNAG00000029597) ENSPNAG00000029692 si:dkey-82o10.4 (ENSPNAG00000009393) efhb (ENSPNAG00000001316) rab5ab (ENSPNAG00000009496) ZNF385D (ENSPNAG00000009509) Cyprinoidei ANCESTRAL SPECIES 25 ENSGT00390000015038 ENSGT00940000163195.A.c ENSGT00940000164651.a.a.d ENSGT00390000001883 ENSGT00940000154222.d.a.k ENSGT00920000149145 ENSGT00390000018094.l ENSGT00940000155549.a.b ENSGT00940000154655.a.i.a ENSGT00940000155321.d.a ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198621 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a.d ENSGT00940000160242.a ENSGT01070000256195 ENSGT00940000155168.a.a ENSGT00940000161037 ENSGT00990000203527.a.a.b ENSGT01050000244814.a.a.b.b.b.a.a.d.a ENSGT00940000167735.a Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 84 ENSGT00950000182883.a.b.b.a.b ENSGT00390000005530.a.b.y ENSGT00950000183046.b.a.a ENSGT00390000015038.f ENSGT00390000001883 ENSGT00940000154222.d.a.k ENSGT00920000149145.m.a ENSGT00390000018094.l.a ENSGT00940000155549.a.b.c ENSGT00730000111042.`b.a ENSGT00940000154655.a.i.a.a ENSGT00940000155321.d.a.o.a ENSGT00940000166527.d ENSGT00980000198621 ENSGT00940000159023.w #17 ENSGT00940000153385.b.a.b.fd.b.c #22 ENSGT00940000161847.b.b.a ENSGT00530000063609.b.w.b ENSGT00940000156439.d ENSGT00940000155660.b.e ENSGT00390000008096.C.a.a.a ENSGT00390000004145.a ENSGT00940000154337.a.a.c ENSGT00940000160242.a.a ENSGT00940000165358 ENSGT00940000155168.a.a.b ENSGT00990000203527.a.a.b.c.a.b ENSGT00940000155168.a.a.a ENSGT00940000161037 ENSGT00990000203527.a.a.b.d ENSGT01050000244814.a.a.b.b.b.a.a.d.a.b Cyprininae_a ANCESTRAL SPECIES 78 ENSGT00390000005530.a.b.y ENSGT00950000183046.b.a.a ENSGT00390000015038.f ENSGT00390000001883 ENSGT00940000154222.d.a.k ENSGT00920000149145.m.a ENSGT00390000018094.l.a ENSGT00940000155549.a.b.c ENSGT00730000111042.`b.a ENSGT00940000154655.a.i.a.a ENSGT00940000155321.d.a.o.a ENSGT00940000166061.b ENSGT00940000166527.d ENSGT00980000198621 ENSGT00940000159023.w #17 ENSGT00940000153385.b.a.b.fd.b.c #22 ENSGT00940000161847.b.b.a ENSGT00530000063609.b.w.b ENSGT00980000198854.b ENSGT00940000155660.b.e ENSGT00390000008096.C.a.a.a ENSGT00390000004145.a ENSGT00940000154337.a.a.c ENSGT00940000160242.a.a ENSGT00940000155168.a.a.a ENSGT00940000161037 ENSGT00990000203527.a.a.b.d ENSGT01050000244814.a.a.b.b.b.a.a.d.a.b ENSGT00940000160704.a.a.c.b ENSGT00390000013999.f ENSGT00940000160467.e Common carp reference MODERN SPECIES 47 ENSCCRG00000037399 mios (ENSCCRG00000046225) col28a1b (ENSCCRG00000042004) ENSCCRG00000042019 septin7b (ENSCCRG00000078615) slc25a32b (ENSCCRG00000061846) ENSCCRG00000045364 ENSCCRG00000060477 ENSCCRG00000063405 eif3ha (ENSCCRG00000029880) rad21a (ENSCCRG00000046891) ext1a (ENSCCRG00000069191) pbx2 (ENSCCRG00000020815) ENSCCRG00000079153 ENSCCRG00000049924 #17 brd2b (ENSCCRG00000061806) #22 ENSCCRG00000030251 ENSCCRG00000063851 ENSCCRG00000075766 ENSCCRG00000073115 ENSCCRG00000082732 si:dkey-82o10.4 (ENSCCRG00000058795) ENSCCRG00000027259 ENSCCRG00000058788 ube2e2 (ENSCCRG00000055274) nr1d2a (ENSCCRG00000022043) ENSCCRG00000045886 ENSCCRG00000072242 lim2.5 (ENSCCRG00000030486) ENSCCRG00000054151 etfb (ENSCCRG00000054593) Golden-line barbel MODERN SPECIES 152 ENSSGRG00000048621 ICA1 (ENSSGRG00000048623) mios (ENSSGRG00000048627) col28a1b (ENSSGRG00000048643) ENSSGRG00000048647 ENSSGRG00000048648 ENSSGRG00000048675 slc25a32b (ENSSGRG00000049805) CTHRC1 (ENSSGRG00000049808) ENSSGRG00000049819 eif3ha (ENSSGRG00000049851) rad21a (ENSSGRG00000049870) ext1a (ENSSGRG00000049923) ENSSGRG00000050099 pbx2 (ENSSGRG00000050100) brd2b (ENSSGRG00000050102) #22 ENSSGRG00000050108 ENSSGRG00000050109 PLCL2 (ENSSGRG00000050110) Goldfish MODERN SPECIES 7 ENSCARG00000024110 mios (ENSCARG00000024080) col28a1b (ENSCARG00000024055) ENSCARG00000023971 septin7b (ENSCARG00000020970) slc25a32b (ENSCARG00000020867) CTHRC1 (ENSCARG00000020857) CSMD3 (ENSCARG00000020568) eif3ha (ENSCARG00000020453) rad21a (ENSCARG00000020411) ext1a (ENSCARG00000020369) ENSCARG00000020361 ENSCARG00000020353 pbx2 (ENSCARG00000020338) TAP1 (ENSCARG00000020234) #17 brd2b (ENSCARG00000020170) #22 ENSCARG00000020164 ENSCARG00000020159 ENSCARG00000020148 ENSCARG00000019495 PLCL2 (ENSCARG00000019453) ENSCARG00000019427 ENSCARG00000019416 RAB5A (ENSCARG00000019389) ZNF385D (ENSCARG00000019375) ube2e2 (ENSCARG00000019368) nr1d2a (ENSCARG00000019356) NEK10 (ENSCARG00000019329) ENSCARG00000019317 lim2.5 (ENSCARG00000019313) ENSCARG00000019305 Cyprininae ANCESTRAL SPECIES 691 ENSGT00940000166061.b ENSGT00940000166527.c ENSGT00940000159023.x #17 ENSGT00940000153385.b.a.b.fd.b.d #22 ENSGT00940000161847.b.b.b ENSGT00530000063609.b.w.a ENSGT00980000198854.a ENSGT00940000155660.b.f ENSGT00390000008096.C.a.a.b ENSGT00530000063528.A.b ENSGT00940000154337.a.a.d ENSGT00940000160242.a.b ENSGT01070000256195 Cyprininae_a ANCESTRAL SPECIES 254 ENSGT00940000178392 ENSGT00940000154222.d.a.l ENSGT00920000149145.m.b ENSGT00390000018094.l.b.b ENSGT00940000155549.a.b.d ENSGT00730000111042.`b.b ENSGT00940000154655.a.i.a.b ENSGT00940000155321.d.a.p ENSGT00940000166527.c ENSGT00940000159023.x #17 ENSGT00940000153385.b.a.b.fd.b.d #22 ENSGT00940000161847.b.b.b ENSGT00530000063609.b.w.a ENSGT00980000198854.a ENSGT00940000155660.b.f ENSGT00390000008096.C.a.a.b ENSGT00530000063528.A.b ENSGT00940000154337.a.a.d ENSGT00940000160242.a.b ENSGT00940000165358 ENSGT00940000155168.a.a.b ENSGT00990000203527.a.a.b.c.a.b ENSGT01050000244814.a.a.b.b.b.a.a.d.a.a ENSGT00390000009936.n ENSGT00940000160704.a.a.c.a.a ENSGT00390000013999.e Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 149 ENSSGRG00000053307 THSD7A (ENSSGRG00000053303) ENSSGRG00000053297 ENSSGRG00000053290 mios (ENSSGRG00000053286) ENSSGRG00000053284 septin7b (ENSSGRG00000052958) CTHRC1 (ENSSGRG00000052943) ENSSGRG00000052930 eif3ha (ENSSGRG00000052895) rad21a (ENSSGRG00000052859) EXT1 (ENSSGRG00000052834) ENSSGRG00000052832 pbx2 (ENSSGRG00000052830) ENSSGRG00000052823 #17 brd2b (ENSSGRG00000052821) #22 BRD2 (ENSSGRG00000052820) #22 ENSSGRG00000052817 ENSSGRG00000052816 ENSSGRG00000052815 PLCL2 (ENSSGRG00000052814) ENSSGRG00000052813 ENSSGRG00000052812 ENSSGRG00000052811 efhb (ENSSGRG00000052810) rab5ab (ENSSGRG00000052799) ZNF385D (ENSSGRG00000052781) ube2e2 (ENSSGRG00000052769) nr1d2a (ENSSGRG00000052762) ENSSGRG00000052761 Golden-line barbel MODERN SPECIES 149 THSD7A (ENSSGRG00000053303) ENSSGRG00000053297 ENSSGRG00000053290 mios (ENSSGRG00000053286) ENSSGRG00000053284 septin7b (ENSSGRG00000052958) CTHRC1 (ENSSGRG00000052943) ENSSGRG00000052930 eif3ha (ENSSGRG00000052895) rad21a (ENSSGRG00000052859) EXT1 (ENSSGRG00000052834) ENSSGRG00000052832 pbx2 (ENSSGRG00000052830) ENSSGRG00000052823 #17 brd2b (ENSSGRG00000052821) #22 BRD2 (ENSSGRG00000052820) #22 ENSSGRG00000052817 ENSSGRG00000052816 ENSSGRG00000052815 PLCL2 (ENSSGRG00000052814) ENSSGRG00000052813 ENSSGRG00000052812 ENSSGRG00000052811 efhb (ENSSGRG00000052810) rab5ab (ENSSGRG00000052799) ZNF385D (ENSSGRG00000052781) ube2e2 (ENSSGRG00000052769) nr1d2a (ENSSGRG00000052762) ENSSGRG00000052761 Common carp reference MODERN SPECIES 2 ENSCCRG00000047723 ENSCCRG00000076044 ENSCCRG00000082404 mios (ENSCCRG00000025187) ENSCCRG00000058022 ENSCCRG00000081747 slc25a32b (ENSCCRG00000075919) ENSCCRG00000078770 ENSCCRG00000064038 eif3ha (ENSCCRG00000023810) rad21a (ENSCCRG00000024578) ext1a (ENSCCRG00000019432) ENSCCRG00000010430 pbx2 (ENSCCRG00000010435) ENSCCRG00000081524 brd2b (ENSCCRG00000074838) #22 ENSCCRG00000020809 ENSCCRG00000005149 ENSCCRG00000030546 PLCL2 (ENSCCRG00000005178) ENSCCRG00000070874 rab5ab (ENSCCRG00000021082) efhb (ENSCCRG00000027291) ENSCCRG00000027215 ube2e2 (ENSCCRG00000034670) nr1d2a (ENSCCRG00000072521) ENSCCRG00000055231 lim2.5 (ENSCCRG00000020849) etfb (ENSCCRG00000076871) ENSCCRG00000060590 ENSCCRG00000007377 Goldfish DUPLICATION Goldfish MODERN SPECIES 177 pbx2 (ENSCARG00000027474) ENSCARG00000027462 ENSCARG00000027337 #17 brd2b (ENSCARG00000027270) #22 ENSCARG00000027262 Goldfish MODERN SPECIES 35 ENSCARG00000056399 ENSCARG00000056395 ENSCARG00000056387 ENSCARG00000056373 hamp (ENSCARG00000056351) USF2 (ENSCARG00000056331) etfb (ENSCARG00000056281) lim2.5 (ENSCARG00000056243) ENSCARG00000056223 ENSCARG00000056210 nr1d2a (ENSCARG00000056152) ENSCARG00000056127 pbx2 (ENSCARG00000056094) ENSCARG00000056078 ENSCARG00000055952 #17 brd2b (ENSCARG00000055873) #22 ENSCARG00000055850 ENSCARG00000055841 ENSCARG00000055824 PLCL2 (ENSCARG00000055805) ENSCARG00000055745 efhb (ENSCARG00000055707) ENSCARG00000055672 ZNF385D (ENSCARG00000055641) ENSCARG00000055624 ENSCARG00000055596 ENSCARG00000055569 TPPP (ENSCARG00000055551) ENSCARG00000055445 baalca (ENSCARG00000055426) atp6v1c1a (ENSCARG00000055128) Zebrafish MODERN SPECIES 7 ICA1 (ENSDARG00000042608) mios (ENSDARG00000102587) col28a1b (ENSDARG00000087087) ENSDARG00000099098 ENSDARG00000021849 septin7b (ENSDARG00000052673) slc25a32b (ENSDARG00000026835) CTHRC1 (ENSDARG00000001971) CSMD3 (ENSDARG00000077905) eif3ha (ENSDARG00000102452) rad21a (ENSDARG00000006092) ext1a (ENSDARG00000103155) pbx2 (ENSDARG00000019717) ENSDARG00000088308 TAP1 (ENSDARG00000079766) #17 brd2b (ENSDARG00000046087) #22 ENSDARG00000097239 ENSDARG00000098654 ENSDARG00000103034 PLCL2 (ENSDARG00000098826) ENSDARG00000111040 ENSDARG00000062621 si:dkey-82o10.4 (ENSDARG00000101526) efhb (ENSDARG00000069703) rab5ab (ENSDARG00000007257) ZNF385D (ENSDARG00000086162) ube2e2 (ENSDARG00000034670) nr1d2a (ENSDARG00000003820) NEK10 (ENSDARG00000025335) ENSDARG00000041292 lim2.5 (ENSDARG00000041295) Euteleosteomorpha ANCESTRAL SPECIES 13 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198621 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00390000017863 ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165550.a.b.b Protacanthopterygii ANCESTRAL SPECIES 12 ENSGT00940000160276 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154222.d.a ENSGT00940000178392 ENSGT00390000001883 ENSGT00940000163195.A.c ENSGT00390000015038 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 45 ENSGT00950000182940.b.a.b.a.a.c ENSGT00940000160276.h ENSGT00940000159172.g ENSGT00730000111185.eb.c ENSGT00760000119652.e.b ENSGT00940000159412.c ENSGT00940000160567.s ENSGT00940000154566.e ENSGT00940000158438.n ENSGT00950000183180.a.b.i ENSGT00940000167370.f ENSGT00390000002634.a.e.f ENSGT00940000166061.b.b ENSGT00940000166527.e ENSGT00980000198621.b ENSGT00940000153385.b.a.b.fd.b.e #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313.p.a ENSGT00530000063609.b.w.j ENSGT00940000156439.d.c ENSGT00940000155660.b.h ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a.a.a ENSGT00940000160242.a.c ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a.f ENSGT00940000156196.a.a Salmoninae_a ANCESTRAL SPECIES 43 ENSGT00940000159172.g ENSGT00730000111185.eb.c ENSGT00760000119652.e.b ENSGT00940000159412.c ENSGT00940000160567.s ENSGT00940000154566.e ENSGT00940000158438.n.e ENSGT00950000183180.a.b.i.a ENSGT00940000167370.f ENSGT00390000002634.a.e.f ENSGT00940000166061.b.b ENSGT00940000166527.e ENSGT00980000198621.b ENSGT00940000159023.z.b #17 ENSGT00940000159023.z.a.b #17 ENSGT00940000153385.b.a.b.fd.b.e #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313.p.a ENSGT00530000063609.b.w.j ENSGT00940000156439.d.c ENSGT00940000155660.b.h ENSGT00390000008096.C.a.d ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a.a.a ENSGT00390000017863.d ENSGT00940000160242.a.c ENSGT00940000165358 ENSGT00940000165550.a.b.a.b.e Oncorhynchus ANCESTRAL SPECIES 3 ENSGT00940000159172.g ENSGT00730000111185.eb.c ENSGT00760000119652.e.b ENSGT00940000159412.c ENSGT00940000160567.s ENSGT00940000154566.e ENSGT00940000158438.n.e ENSGT00950000183180.a.b.i.a ENSGT00940000167370.f ENSGT00390000002634.a.e.f ENSGT00940000166061.b.b ENSGT00940000166527.e ENSGT00980000198621.b ENSGT00940000159023.z.b #17 ENSGT00940000159023.z.a.b #17 ENSGT00940000153385.b.a.b.fd.b.e #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313.p.a ENSGT00530000063609.b.w.j ENSGT00940000156439.d.c ENSGT00940000155660.b.h ENSGT00390000008096.C.a.d ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a.a.a ENSGT00390000017863.d ENSGT00940000160242.a.c ENSGT00940000165358.i ENSGT00940000165550.a.b.a.b.e Oncorhynchus_a ANCESTRAL SPECIES 39 ENSGT00950000182940.b.a.b.a.a.c ENSGT00940000160276.h ENSGT00940000159172.g ENSGT00730000111185.eb.c ENSGT00760000119652.e.b ENSGT00940000159412.c ENSGT00940000160567.s ENSGT00940000154566.e ENSGT00940000158438.n.e ENSGT00950000183180.a.b.i.a ENSGT00940000167370.f ENSGT00390000002634.a.e.f ENSGT00940000166061.b.b ENSGT00940000166527.e ENSGT00940000159023.z.a.b #17 ENSGT00940000153385.b.a.b.fd.b.e #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313.p.a ENSGT00530000063609.b.w.j ENSGT00940000156439.d.c ENSGT00940000155660.b.h ENSGT00390000008096.C.a.d ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a.a.a ENSGT00390000017863.d ENSGT00940000160242.a.c ENSGT00940000165358.i ENSGT00940000165550.a.b.a.b.e Coho salmon MODERN SPECIES 11 ENSOKIG00005023731 SV2A (ENSOKIG00005023756) mtmr11 (ENSOKIG00005023835) otud7b (ENSOKIG00005023961) rbm8a (ENSOKIG00005024006) ENSOKIG00005024041 ntrk1 (ENSOKIG00005024065) PAQR6 (ENSOKIG00005024083) smg5 (ENSOKIG00005024109) SYNGAP1 (ENSOKIG00005024218) PHF1 (ENSOKIG00005026963) rgl2 (ENSOKIG00005027119) dnase2 (ENSOKIG00005027197) pbx2 (ENSOKIG00005027218) TAP1 (ENSOKIG00005027237) #17 BRD2 (ENSOKIG00005027339) #22 ENSOKIG00005027444 ENSOKIG00005027464 VMO1 (ENSOKIG00005027501) ENSOKIG00005027517 ENSOKIG00005027528 PLCL2 (ENSOKIG00005027545) ENSOKIG00005027557 si:dkey-82o10.4 (ENSOKIG00005027596) efhb (ENSOKIG00005027615) rab5ab (ENSOKIG00005027641) ENSOKIG00005027701 ube2e2 (ENSOKIG00005027719) nr1d2a (ENSOKIG00005027773) ENSOKIG00005027858 septin7b (ENSOKIG00005028076) Chinook salmon MODERN SPECIES 22 SV2A (ENSOTSG00005007461) mtmr11 (ENSOTSG00005007464) otud7b (ENSOTSG00005007467) rbm8a (ENSOTSG00005007474) ENSOTSG00005007475 ntrk1 (ENSOTSG00005007479) PAQR6 (ENSOTSG00005007482) smg5 (ENSOTSG00005007486) SYNGAP1 (ENSOTSG00005007737) PHF1 (ENSOTSG00005007739) rgl2 (ENSOTSG00005007742) dnase2 (ENSOTSG00005007746) ENSOTSG00005007748 pbx2 (ENSOTSG00005007758) ENSOTSG00005007759 #17 ENSOTSG00005007760 #22 VMO1 (ENSOTSG00005007762) ENSOTSG00005007783 ENSOTSG00005008511 ENSOTSG00005008512 ENSOTSG00005008513 ENSOTSG00005008515 ENSOTSG00005008524 si:dkey-82o10.4 (ENSOTSG00005008528) ENSOTSG00005008532 efhb (ENSOTSG00005008535) rab5ab (ENSOTSG00005011027) ENSOTSG00005011045 ZNF385D (ENSOTSG00005011047) ENSOTSG00005011059 ube2e2 (ENSOTSG00005011062) Rainbow trout MODERN SPECIES 21 ENSOMYG00000004956 ENSOMYG00000005084 ntrk1 (ENSOMYG00000005041) ENSOMYG00000053347 smg5 (ENSOMYG00000005422) ENSOMYG00000048396 ENSOMYG00000005694 ENSOMYG00000005982 rgl2 (ENSOMYG00000005901) ENSOMYG00000052233 dnase2 (ENSOMYG00000006034) ENSOMYG00000006056 pbx2 (ENSOMYG00000006078) ENSOMYG00000006114 ENSOMYG00000006200 #17 ENSOMYG00000006362 #22 ENSOMYG00000050780 ENSOMYG00000006489 ENSOMYG00000006578 ENSOMYG00000006586 ENSOMYG00000006632 ENSOMYG00000006928 si:dkey-82o10.4 (ENSOMYG00000006969) ENSOMYG00000006804 rab5ab (ENSOMYG00000007020) ENSOMYG00000007065 ube2e2 (ENSOMYG00000007159) ENSOMYG00000049425 nr1d2a (ENSOMYG00000007343) ENSOMYG00000052779 ENSOMYG00000075187 Salmo ANCESTRAL SPECIES 32 ENSGT00950000182940.b.a.b.a.a.c ENSGT00940000160276.h ENSGT00940000159172.g ENSGT00730000111185.eb.c ENSGT00760000119652.e.b ENSGT00940000159412.c ENSGT00940000160567.s ENSGT00940000154566.e ENSGT00940000158438.n.e ENSGT00950000183180.a.b.j.a ENSGT00940000167370.f ENSGT00390000002634.a.e.f ENSGT00940000166061.b.b ENSGT00940000166527.e ENSGT00980000198621.b ENSGT00940000153385.b.a.b.fd.b.e #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313.o ENSGT00530000063609.b.w.j.a ENSGT00530000063609.b.w.j.b ENSGT00940000156439.d.c ENSGT00940000155660.b.h ENSGT00390000008096.C.a.d ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a.a.a ENSGT00390000017863.d ENSGT00940000160242.a.c ENSGT00940000165550.a.a.b ENSGT00940000155168.a.a.f Atlantic salmon MODERN SPECIES 11 SV2A (ENSSSAG00000007246) mtmr11 (ENSSSAG00000072926) otud7b (ENSSSAG00000007068) ENSSSAG00000072959 rbm8a (ENSSSAG00000112907) ntrk1 (ENSSSAG00000072961) ENSSSAG00000082263 ENSSSAG00000089830 smg5 (ENSSSAG00000072976) ENSSSAG00000073247 ENSSSAG00000073965 rgl2 (ENSSSAG00000073947) dnase2 (ENSSSAG00000096026) pbx2 (ENSSSAG00000005841) ENSSSAG00000113663 ENSSSAG00000073985 #22 ENSSSAG00000074015 ENSSSAG00000074036 ENSSSAG00000074512 ENSSSAG00000005193 ENSSSAG00000074516 ENSSSAG00000110570 ENSSSAG00000074521 ENSSSAG00000074524 si:dkey-82o10.4 (ENSSSAG00000074533) efhb (ENSSSAG00000074537) ENSSSAG00000110150 ENSSSAG00000074544 ENSSSAG00000005076 ENSSSAG00000095170 ube2e2 (ENSSSAG00000104908) River trout MODERN SPECIES 30 bola1 (ENSSTUG00000038739) SV2A (ENSSTUG00000038754) mtmr11 (ENSSTUG00000038901) otud7b (ENSSTUG00000038974) rbm8a (ENSSTUG00000038984) ENSSTUG00000039005 ntrk1 (ENSSTUG00000039023) PAQR6 (ENSSTUG00000039052) smg5 (ENSSTUG00000039078) SYNGAP1 (ENSSTUG00000039408) ENSSTUG00000041867 rgl2 (ENSSTUG00000042149) dnase2 (ENSSTUG00000042334) ENSSTUG00000042362 pbx2 (ENSSTUG00000042384) BRD2 (ENSSTUG00000042401) #22 ENSSTUG00000042604 ENSSTUG00000042635 ENSSTUG00000042709 ENSSTUG00000042724 ENSSTUG00000042745 ENSSTUG00000042765 ENSSTUG00000042800 ENSSTUG00000042827 si:dkey-82o10.4 (ENSSTUG00000042900) efhb (ENSSTUG00000042934) rab5ab (ENSSTUG00000042995) ENSSTUG00000043045 ZNF385D (ENSSTUG00000043093) ENSSTUG00000043125 nr1d2a (ENSSTUG00000043201) Huchen MODERN SPECIES 445 SV2A (ENSHHUG00000040181) mtmr11 (ENSHHUG00000040147) otud7b (ENSHHUG00000040135) rbm8a (ENSHHUG00000040095) ENSHHUG00000040082 ENSHHUG00000040068 ntrk1 (ENSHHUG00000040059) PAQR6 (ENSHHUG00000040050) smg5 (ENSHHUG00000039950) PHF1 (ENSHHUG00000039873) rgl2 (ENSHHUG00000039841) dnase2 (ENSHHUG00000039834) ENSHHUG00000039829 pbx2 (ENSHHUG00000039805) ENSHHUG00000039797 ENSHHUG00000039762 #22 ENSHHUG00000038989 VMO1 (ENSHHUG00000038962) ENSHHUG00000038955 ENSHHUG00000038927 PLCL2 (ENSHHUG00000038915) Salmoninae ANCESTRAL SPECIES 27 ENSGT00940000160276.g ENSGT00940000159172.h ENSGT00730000111185.eb.d ENSGT00760000119652.e.a ENSGT00940000159412.d ENSGT00940000160567.t ENSGT00940000154566.f ENSGT00950000183180.a.b.j.b ENSGT00940000167370.e ENSGT00390000002634.a.e.e ENSGT00940000166061.b.a ENSGT00940000175842 ENSGT00940000166527.f ENSGT00980000198621.a ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b.f #22 ENSGT00940000178830 ENSGT00530000063609.b.w.i ENSGT00940000156439.d.d ENSGT00940000155660.b.g ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.a.a.a.b ENSGT00390000017863 ENSGT00940000160242.a.d ENSGT00940000155168.a.a.e ENSGT00940000156196.a.b ENSGT00940000161037 ENSGT00940000154222.d.a.i ENSGT00940000163195.A.c.b ENSGT00390000015038.i Salmoninae_a ANCESTRAL SPECIES 39 ENSGT00940000160276.g ENSGT00940000159172.h ENSGT00730000111185.eb.d ENSGT00760000119652.e.a ENSGT00940000159412.d ENSGT00940000160567.t ENSGT00940000154566.f ENSGT00940000158438.n.f ENSGT00950000183180.a.b.i.b.a ENSGT00940000167370.e ENSGT00390000002634.a.e.e ENSGT00940000166061.b.a ENSGT00940000166527.f ENSGT00980000198621.a ENSGT00940000159023.z.a.a #17 ENSGT00940000153385.b.a.b.fd.b.f #22 ENSGT00940000178830 ENSGT00530000063609.b.w.i ENSGT00940000156439.d.d ENSGT00940000155660.b.g ENSGT00390000008096.C.a.c ENSGT00940000168259 ENSGT00940000154337.a.a.a.b ENSGT00390000017863.c ENSGT00940000160242.a.d ENSGT00940000155168.a.a.e ENSGT00940000156196.a.b ENSGT00940000161037 ENSGT00940000154222.d.a.i ENSGT00390000001883.f ENSGT00940000163195.A.c.a.b.a.b Salmo ANCESTRAL SPECIES 1 ENSGT00950000182940.b.a.b.a.a.d ENSGT00940000160276.g ENSGT00940000159172.h ENSGT00730000111185.eb.d ENSGT00760000119652.e.a ENSGT00940000159412.d ENSGT00940000160567.t ENSGT00940000154566.f ENSGT00940000158438.n.f ENSGT00950000183180.a.b.i.b.a ENSGT00940000167370.e ENSGT00390000002634.a.e.e ENSGT00940000166061.b.a ENSGT00940000166527.f ENSGT00940000159023.z.a.a #17 ENSGT00940000153385.b.a.b.fd.b.f #22 ENSGT01060000253451 ENSGT00530000063609.b.w.i ENSGT00940000156439.d.d ENSGT00940000155660.b.g ENSGT00390000008096.C.a.c ENSGT00940000154337.a.a.a.b ENSGT00390000017863.c ENSGT00940000160242.a.d ENSGT00940000165358 ENSGT00940000165550.a.b.a.b.e ENSGT00940000155168.a.a.e ENSGT00940000156196.a.b ENSGT00940000161037 ENSGT00940000154222.d.a.i ENSGT00390000001883.f River trout MODERN SPECIES 22 mtmr11 (ENSSTUG00000037559) otud7b (ENSSTUG00000037519) ENSSTUG00000037511 rbm8a (ENSSTUG00000037492) ENSSTUG00000037480 ntrk1 (ENSSTUG00000037432) PAQR6 (ENSSTUG00000037418) smg5 (ENSSTUG00000036549) SYNGAP1 (ENSSTUG00000036422) PHF1 (ENSSTUG00000036207) rgl2 (ENSSTUG00000036123) dnase2 (ENSSTUG00000036111) ENSSTUG00000036100 pbx2 (ENSSTUG00000036084) TAP1 (ENSSTUG00000035704) #17 ENSSTUG00000035626 #22 ENSSTUG00000035621 ENSSTUG00000035613 ENSSTUG00000035603 ENSSTUG00000035590 PLCL2 (ENSSTUG00000035580) ENSSTUG00000035539 ENSSTUG00000035530 rab5ab (ENSSTUG00000035514) ENSSTUG00000035511 ZNF385D (ENSSTUG00000035505) nr1d2a (ENSSTUG00000035430) ENSSTUG00000035391 NEK10 (ENSSTUG00000035244) septin7b (ENSSTUG00000031833) ENSSTUG00000031716 Atlantic salmon MODERN SPECIES 24 otud7b (ENSSSAG00000109418) rbm8a (ENSSSAG00000007055) ENSSSAG00000007048 ntrk1 (ENSSSAG00000007032) ENSSSAG00000100845 smg5 (ENSSSAG00000006730) ENSSSAG00000006576 ENSSSAG00000005949 rgl2 (ENSSSAG00000005857) dnase2 (ENSSSAG00000073967) ENSSSAG00000119738 pbx2 (ENSSSAG00000073977) ENSSSAG00000005840 tap1 (ENSSSAG00000005352) #17 ENSSSAG00000097841 ENSSSAG00000005215 #22 ENSSSAG00000103460 ENSSSAG00000109004 ENSSSAG00000093757 ENSSSAG00000005169 ENSSSAG00000005140 rab5a (ENSSSAG00000005090) ENSSSAG00000005083 ZNF385D (ENSSSAG00000120560) ube2e2 (ENSSSAG00000110907) ENSSSAG00000005025 nr1d2a (ENSSSAG00000005012) ENSSSAG00000004993 ENSSSAG00000004894 septin7b (ENSSSAG00000003872) ENSSSAG00000003811 Oncorhynchus ANCESTRAL SPECIES 38 ENSGT00940000159172.h ENSGT00730000111185.eb.d ENSGT00760000119652.e.a ENSGT00940000159412.d ENSGT00940000160567.t ENSGT00940000154566.f ENSGT00940000158438.n.f ENSGT00950000183180.a.b.i.b.a ENSGT00940000167370.e ENSGT00390000002634.a.e.e ENSGT00940000175842 ENSGT00940000166061.b.a ENSGT00940000166527.f ENSGT00980000198621.a ENSGT00940000159023.z.a.a #17 ENSGT00940000153385.b.a.b.fd.b.f #22 ENSGT00940000178830 ENSGT00530000063609.b.w.i ENSGT00940000156439.d.d ENSGT00940000155660.b.g ENSGT00390000008096.C.a.c ENSGT00940000168259 ENSGT00940000154337.a.a.a.b ENSGT00390000017863.c ENSGT00940000160242.a.d ENSGT00940000165358.j ENSGT00940000155168.a.a.e ENSGT00940000156196.a.b ENSGT00940000161037 ENSGT00940000154222.d.a.i ENSGT00390000001883.f Rainbow trout MODERN SPECIES 11 rbm8a (ENSOMYG00000001267) ENSOMYG00000001191 ntrk1 (ENSOMYG00000001377) ENSOMYG00000001438 smg5 (ENSOMYG00000001694) ENSOMYG00000048746 ENSOMYG00000062449 ENSOMYG00000002081 ENSOMYG00000058879 ENSOMYG00000002193 rgl2 (ENSOMYG00000002302) dnase2 (ENSOMYG00000002329) ENSOMYG00000069826 pbx2 (ENSOMYG00000002362) ENSOMYG00000002497 #17 ENSOMYG00000002612 #22 ENSOMYG00000002664 ENSOMYG00000002677 ENSOMYG00000002704 ENSOMYG00000002719 ENSOMYG00000002798 ENSOMYG00000056184 ENSOMYG00000002829 rab5ab (ENSOMYG00000002847) ENSOMYG00000002864 ZNF385D (ENSOMYG00000002878) ube2e2 (ENSOMYG00000002946) nr1d2a (ENSOMYG00000002986) ENSOMYG00000065644 ENSOMYG00000057705 ENSOMYG00000003070 Oncorhynchus_a ANCESTRAL SPECIES 26 ENSGT00940000159172.h ENSGT00730000111185.eb.d ENSGT00760000119652.e.a ENSGT00940000159412.d ENSGT00940000160567.t ENSGT00940000154566.f ENSGT00940000158438.n.f ENSGT00950000183180.a.b.i.b.a ENSGT00940000167370.e ENSGT00390000002634.a.e.e ENSGT00940000166527.f.b ENSGT00940000166061.b.a ENSGT00940000166527.f.a ENSGT00980000198621.a ENSGT00940000159023.z.a.a #17 ENSGT00940000153385.b.a.b.fd.b.f #22 ENSGT00940000178830 ENSGT00530000063609.b.w.i ENSGT00940000156439.d.d ENSGT00940000155660.b.g ENSGT00390000008096.C.a.c ENSGT00940000154337.a.a.a.b ENSGT00390000017863.c ENSGT00940000160242.a.d ENSGT00940000155168.a.a.e ENSGT00940000156196.a.b ENSGT00940000161037 ENSGT00940000154222.d.a.i ENSGT00390000001883.f ENSGT00940000163195.A.c.b ENSGT00390000015038.i Chinook salmon MODERN SPECIES 15 otud7b (ENSOTSG00005016074) rbm8a (ENSOTSG00005016077) ENSOTSG00005016078 ntrk1 (ENSOTSG00005016082) PAQR6 (ENSOTSG00005016084) smg5 (ENSOTSG00005016088) SYNGAP1 (ENSOTSG00005016140) ENSOTSG00005016164 rgl2 (ENSOTSG00005016183) dnase2 (ENSOTSG00005016188) ENSOTSG00005016191 ENSOTSG00005016193 pbx2 (ENSOTSG00005016195) ENSOTSG00005016201 TAP1 (ENSOTSG00005016202) #17 ENSOTSG00005016740 #22 ENSOTSG00005016746 ENSOTSG00005016751 ENSOTSG00005016752 PLCL2 (ENSOTSG00005016753) ENSOTSG00005016757 rab5ab (ENSOTSG00005016759) ENSOTSG00005016760 ZNF385D (ENSOTSG00005016761) nr1d2a (ENSOTSG00005016764) ENSOTSG00005016781 NEK10 (ENSOTSG00005016788) septin7b (ENSOTSG00005016792) ENSOTSG00005021181 ENSOTSG00005021257 mios (ENSOTSG00005021329) Coho salmon MODERN SPECIES 4 SV2A (ENSOKIG00005029023) mtmr11 (ENSOKIG00005028972) otud7b (ENSOKIG00005028941) rbm8a (ENSOKIG00005028902) ENSOKIG00005028887 ntrk1 (ENSOKIG00005028828) PAQR6 (ENSOKIG00005028796) smg5 (ENSOKIG00005028698) SYNGAP1 (ENSOKIG00005028484) PHF1 (ENSOKIG00005028305) rgl2 (ENSOKIG00005028179) ENSOKIG00005028167 dnase2 (ENSOKIG00005028160) pbx2 (ENSOKIG00005028150) TAP1 (ENSOKIG00005027569) #17 BRD2 (ENSOKIG00005027190) #22 ENSOKIG00005027136 ENSOKIG00005027128 ENSOKIG00005027109 ENSOKIG00005027095 PLCL2 (ENSOKIG00005027082) ENSOKIG00005027076 ENSOKIG00005027009 rab5ab (ENSOKIG00005026922) ENSOKIG00005026888 ZNF385D (ENSOKIG00005026878) ENSOKIG00005026853 nr1d2a (ENSOKIG00005026836) ENSOKIG00005026775 NEK10 (ENSOKIG00005026735) septin7b (ENSOKIG00005025435) Huchen MODERN SPECIES 597 SV2A (ENSHHUG00000036379) mtmr11 (ENSHHUG00000036360) otud7b (ENSHHUG00000036354) rbm8a (ENSHHUG00000036306) ENSHHUG00000036298 ntrk1 (ENSHHUG00000036280) PAQR6 (ENSHHUG00000036265) smg5 (ENSHHUG00000036250) ENSHHUG00000036212 rgl2 (ENSHHUG00000036159) dnase2 (ENSHHUG00000036145) ENSHHUG00000036142 pbx2 (ENSHHUG00000036137) ENSHHUG00000036135 ENSHHUG00000035969 #17 ENSHHUG00000035919 #22 ENSHHUG00000035911 ENSHHUG00000035904 ENSHHUG00000035892 ENSHHUG00000035883 Northern pike MODERN SPECIES 19 ENSELUG00000012315 mtmr11 (ENSELUG00000012368) otud7b (ENSELUG00000000461) rbm8a (ENSELUG00000033507) ntrk1 (ENSELUG00000012483) PAQR6 (ENSELUG00000012518) smg5 (ENSELUG00000012585) SYNGAP1 (ENSELUG00000012732) PHF1 (ENSELUG00000012939) rgl2 (ENSELUG00000000473) dnase2 (ENSELUG00000013030) ENSELUG00000013047 pbx2 (ENSELUG00000013086) ENSELUG00000013110 ENSELUG00000013120 #17 BRD2 (ENSELUG00000013167) #22 ENSELUG00000013187 ENSELUG00000013226 ENSELUG00000013267 PLCL2 (ENSELUG00000013315) ENSELUG00000013387 efhb (ENSELUG00000013423) rab5ab (ENSELUG00000027339) ZNF385D (ENSELUG00000013443) ube2e2 (ENSELUG00000013551) nr1d2a (ENSELUG00000013653) ENSELUG00000013678 NEK10 (ENSELUG00000013730) septin7b (ENSELUG00000013781) ENSELUG00000013823 ENSELUG00000013795 Acanthomorphata ANCESTRAL SPECIES 34 ENSGT00940000160276 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000160276 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165550.a.b.b Pinecone sodierfish MODERN SPECIES 7 rbm8a (ENSMMDG00005003183) afp4 (ENSMMDG00005003187) ntrk1 (ENSMMDG00005003192) PAQR6 (ENSMMDG00005003200) smg5 (ENSMMDG00005003221) SYNGAP1 (ENSMMDG00005003258) ENSMMDG00005003308 rgl2 (ENSMMDG00005003337) dnase2 (ENSMMDG00005003346) ENSMMDG00005003352 pbx2 (ENSMMDG00005003360) ENSMMDG00005003364 ENSMMDG00005003366 her7 (ENSMMDG00005003368) ENSMMDG00005003376 #17 ENSMMDG00005003447 #22 VMO1 (ENSMMDG00005003449) ENSMMDG00005003451 ENSMMDG00005003466 ENSMMDG00005003470 ENSMMDG00005003475 ENSMMDG00005003479 ENSMMDG00005003507 PLCL2 (ENSMMDG00005005290) ENSMMDG00005005294 si:dkey-82o10.4 (ENSMMDG00005005298) efhb (ENSMMDG00005005303) ENSMMDG00005005310 ENSMMDG00005005335 ZNF385D (ENSMMDG00005005347) ENSMMDG00005005371 Percomorphaceae ANCESTRAL SPECIES ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 Tiger tail seahorse MODERN SPECIES 276 gpatch4 (ENSHCOG00000007016) ENSHCOG00000006996 tspan13a (ENSHCOG00000006990) bag6 (ENSHCOG00000006980) glrx3 (ENSHCOG00000006958) ENSHCOG00000000206 tnfb (ENSHCOG00000006938) GABBR1 (ENSHCOG00000006927) ENSHCOG00000006882 sh3bp5la (ENSHCOG00000006830) mgat1a (ENSHCOG00000006811) dhx16 (ENSHCOG00000006805) ppt2a.2 (ENSHCOG00000006744) ENSHCOG00000006658 ENSHCOG00000006651 #17 BRD2 (ENSHCOG00000006633) #22 ankmy2a (ENSHCOG00000006616) ankmy2a (ENSHCOG00000006604) crppa (ENSHCOG00000006568) sostdc1a (ENSHCOG00000006558) MEOX2 (ENSHCOG00000006546) agmo (ENSHCOG00000006529) DGKB (ENSHCOG00000006513) etv1 (ENSHCOG00000006468) arl4aa (ENSHCOG00000006452) ENSHCOG00000006416 seraf (ENSHCOG00000006340) tmem106ba (ENSHCOG00000006336) THSD7A (ENSHCOG00000006330) ENSHCOG00000006274 ICA1 (ENSHCOG00000006232) Percomorphaceae_B ANCESTRAL SPECIES 1 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000162790.a.v ENSGT00940000178830 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a Ovalentaria ANCESTRAL SPECIES 3 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000162790.a.v ENSGT00940000178830 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000168259 ENSGT00940000154337.b Ovalentaria_B ANCESTRAL SPECIES 1 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00940000178830 ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000174959 ENSGT00940000154337.b ENSGT00940000160242.a Pomacentridae ANCESTRAL SPECIES 25 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000178830 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000174959 ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000160242.a ENSGT00940000155985 Pomacentridae_A ANCESTRAL SPECIES 16 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00940000178830 ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000174959 ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000160242.a ENSGT00940000155985 Amphiprion ANCESTRAL SPECIES 1 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00940000178830 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000174959 ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000160242.a ENSGT00940000165358 Clown anemonefish MODERN SPECIES 1676 PAQR6 (ENSAOCG00000019386) smg5 (ENSAOCG00000019483) SYNGAP1 (ENSAOCG00000019546) PHF1 (ENSAOCG00000019699) rgl2 (ENSAOCG00000001455) dnase2 (ENSAOCG00000019835) ENSAOCG00000019871 pbx2 (ENSAOCG00000019915) ENSAOCG00000019947 ENSAOCG00000019968 ENSAOCG00000020009 ENSAOCG00000020033 #17 BRD2 (ENSAOCG00000020099) #22 ENSAOCG00000020138 ENSAOCG00000001493 ENSAOCG00000020167 Orange clownfish MODERN SPECIES 21 rbm8a (ENSAPEG00000022847) afp4 (ENSAPEG00000022859) ntrk1 (ENSAPEG00000022877) PAQR6 (ENSAPEG00000022918) smg5 (ENSAPEG00000022949) SYNGAP1 (ENSAPEG00000023032) PHF1 (ENSAPEG00000023049) rgl2 (ENSAPEG00000023146) dnase2 (ENSAPEG00000023208) ENSAPEG00000023227 pbx2 (ENSAPEG00000023234) her7 (ENSAPEG00000023260) ENSAPEG00000023287 ENSAPEG00000023290 ENSAPEG00000023306 #17 BRD2 (ENSAPEG00000023337) #22 ENSAPEG00000023344 ENSAPEG00000023356 ENSAPEG00000023398 ENSAPEG00000023414 ENSAPEG00000023425 ENSAPEG00000023435 PLCL2 (ENSAPEG00000023490) ENSAPEG00000023503 ENSAPEG00000023537 si:dkey-82o10.4 (ENSAPEG00000023551) ENSAPEG00000023557 rab5ab (ENSAPEG00000023587) ENSAPEG00000023616 ENSAPEG00000023643 ube2e2 (ENSAPEG00000023663) Spiny chromis MODERN SPECIES 374 PAQR6 (ENSAPOG00000019568) smg5 (ENSAPOG00000019690) SYNGAP1 (ENSAPOG00000019729) PHF1 (ENSAPOG00000019739) rgl2 (ENSAPOG00000019885) dnase2 (ENSAPOG00000001018) ENSAPOG00000019942 pbx2 (ENSAPOG00000000569) her7 (ENSAPOG00000019986) ENSAPOG00000019991 ENSAPOG00000020051 TAP1 (ENSAPOG00000020061) #17 BRD2 (ENSAPOG00000020121) #22 ENSAPOG00000020159 ENSAPOG00000020176 ENSAPOG00000020201 ENSAPOG00000020209 ENSAPOG00000020221 Bicolor damselfish MODERN SPECIES 461 PAQR6 (ENSSPAG00000014237) smg5 (ENSSPAG00000014266) SYNGAP1 (ENSSPAG00000014370) PHF1 (ENSSPAG00000014414) ENSSPAG00000014486 dnase2 (ENSSPAG00000014500) ENSSPAG00000014535 pbx2 (ENSSPAG00000014564) her7 (ENSSPAG00000014587) ENSSPAG00000014595 ENSSPAG00000014608 ENSSPAG00000014617 #17 ENSSPAG00000014641 #22 ENSSPAG00000014694 ENSSPAG00000014703 ENSSPAG00000014721 VMO1 (ENSSPAG00000014738) ENSSPAG00000014750 ENSSPAG00000014761 PLCL2 (ENSSPAG00000014771) Cichlidae ANCESTRAL SPECIES 9 ENSGT00940000160276 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488 ENSGT00940000177646 ENSGT01100000266356 Pseudocrenilabrinae ANCESTRAL SPECIES 2 ENSGT00940000160276 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488 ENSGT01100000266356 ENSGT00940000156196.a Nile tilapia MODERN SPECIES 2 mtmr11 (ENSONIG00000008602) otud7b (ENSONIG00000008603) rbm8a (ENSONIG00000008608) ntrk1 (ENSONIG00000008622) PAQR6 (ENSONIG00000008626) smg5 (ENSONIG00000008632) SYNGAP1 (ENSONIG00000008635) ENSONIG00000033348 rgl2 (ENSONIG00000008644) dnase2 (ENSONIG00000008649) pbx2 (ENSONIG00000008651) her7 (ENSONIG00000032325) ENSONIG00000043049 her7 (ENSONIG00000008659) tap1 (ENSONIG00000008663) #17 BRD2 (ENSONIG00000008676) #22 ENSONIG00000008684 ENSONIG00000033096 ENSONIG00000008685 PLCL2 (ENSONIG00000008687) ENSONIG00000008688 si:dkey-82o10.4 (ENSONIG00000008690) ENSONIG00000008692 rab5ab (ENSONIG00000008693) ENSONIG00000027430 ube2e2 (ENSONIG00000008694) ENSONIG00000040396 ube2e1 (ENSONIG00000008697) nr1d2a (ENSONIG00000008699) ENSONIG00000035927 ENSONIG00000035953 Pseudocrenilabrinae_A ANCESTRAL SPECIES 1 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g.c ENSGT00700000104815.g.d ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488.a ENSGT01100000266356 ENSGT00940000156196.a Haplochromini ANCESTRAL SPECIES 6 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g.c ENSGT00700000104815.g.d ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488.a ENSGT01100000266356 ENSGT00940000156196.a Haplochromini_A ANCESTRAL SPECIES 27 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g.c ENSGT00700000104815.g.d ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488.b ENSGT00940000163911.a.a.b.a.a.a.a.a.a ENSGT01030000234907.k P. nyererei DUPLICATION P. nyererei MODERN SPECIES 433 rbm8a (ENSPNYG00000013564) ntrk1 (ENSPNYG00000013517) PAQR6 (ENSPNYG00000013500) smg5 (ENSPNYG00000013397) SYNGAP1 (ENSPNYG00000013123) PHF1 (ENSPNYG00000013037) rgl2 (ENSPNYG00000012979) dnase2 (ENSPNYG00000012955) ENSPNYG00000012935 pbx2 (ENSPNYG00000012906) her7 (ENSPNYG00000012890) her7 (ENSPNYG00000012880) ENSPNYG00000012855 ENSPNYG00000012832 #17 brd2b (ENSPNYG00000012810) #22 BRD2 (ENSPNYG00000012798) #22 VMO1 (ENSPNYG00000012791) ENSPNYG00000012774 ENSPNYG00000012749 PLCL2 (ENSPNYG00000012715) ENSPNYG00000012678 si:dkey-82o10.4 (ENSPNYG00000012649) efhb (ENSPNYG00000012619) rab5ab (ENSPNYG00000012596) ZNF385D (ENSPNYG00000012576) ube2e2 (ENSPNYG00000012556) ube2e1 (ENSPNYG00000012540) nr1d2a (ENSPNYG00000012463) ENSPNYG00000012409 ENSPNYG00000012393 P. nyererei MODERN SPECIES 433 otud7b (ENSPNYG00000013585) rbm8a (ENSPNYG00000013564) ntrk1 (ENSPNYG00000013517) PAQR6 (ENSPNYG00000013500) smg5 (ENSPNYG00000013397) SYNGAP1 (ENSPNYG00000013123) PHF1 (ENSPNYG00000013037) rgl2 (ENSPNYG00000012979) dnase2 (ENSPNYG00000012955) ENSPNYG00000012935 pbx2 (ENSPNYG00000012906) her7 (ENSPNYG00000012890) her7 (ENSPNYG00000012880) ENSPNYG00000012855 ENSPNYG00000012832 #17 brd2b (ENSPNYG00000012810) #22 BRD2 (ENSPNYG00000012798) #22 VMO1 (ENSPNYG00000012791) ENSPNYG00000012774 ENSPNYG00000012749 PLCL2 (ENSPNYG00000012715) ENSPNYG00000012678 si:dkey-82o10.4 (ENSPNYG00000012649) efhb (ENSPNYG00000012619) rab5ab (ENSPNYG00000012596) ZNF385D (ENSPNYG00000012576) ube2e2 (ENSPNYG00000012556) ube2e1 (ENSPNYG00000012540) nr1d2a (ENSPNYG00000012463) ENSPNYG00000012409 ENSPNYG00000012393 Haplochromini_B ANCESTRAL SPECIES 6 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g.c ENSGT00700000104815.g.d ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488.a ENSGT00940000163911.a.a.b.a.a.a.a.a.a ENSGT01030000234907.k Zebra mbuna MODERN SPECIES 1093 NEK10 (ENSMZEG00005015752) ENSMZEG00005015774 ENSMZEG00005015798 ENSMZEG00005015805 smg5 (ENSMZEG00005015815) SYNGAP1 (ENSMZEG00005015849) PHF1 (ENSMZEG00005016144) rgl2 (ENSMZEG00005016157) dnase2 (ENSMZEG00005016176) ENSMZEG00005016184 pbx2 (ENSMZEG00005016188) her7 (ENSMZEG00005016194) her7 (ENSMZEG00005016198) ENSMZEG00005016203 ENSMZEG00005016207 #17 BRD2 (ENSMZEG00005016215) #22 VMO1 (ENSMZEG00005016227) ENSMZEG00005016237 ENSMZEG00005016241 PLCL2 (ENSMZEG00005016252) ENSMZEG00005016275 si:dkey-82o10.4 (ENSMZEG00005016280) efhb (ENSMZEG00005016283) rab5ab (ENSMZEG00005016286) ZNF385D (ENSMZEG00005016295) ENSMZEG00005016299 ube2e2 (ENSMZEG00005016306) ube2e1 (ENSMZEG00005016310) nr1d2a (ENSMZEG00005016315) ENSMZEG00005016322 rpz4 (ENSMZEG00005016332) Eastern happy MODERN SPECIES 2 rbm8a (ENSACLG00000009627) ntrk1 (ENSACLG00000009587) PAQR6 (ENSACLG00000009375) smg5 (ENSACLG00000009311) SYNGAP1 (ENSACLG00000008961) PHF1 (ENSACLG00000008933) rgl2 (ENSACLG00000008918) dnase2 (ENSACLG00000008911) ENSACLG00000008899 pbx2 (ENSACLG00000008881) her7 (ENSACLG00000008874) ENSACLG00000008872 ENSACLG00000008868 ENSACLG00000008848 ENSACLG00000008829 #17 BRD2 (ENSACLG00000008805) #22 VMO1 (ENSACLG00000008801) ENSACLG00000008793 ENSACLG00000008435 PLCL2 (ENSACLG00000008409) ENSACLG00000008402 ENSACLG00000007560 si:dkey-82o10.4 (ENSACLG00000007548) efhb (ENSACLG00000007516) rab5ab (ENSACLG00000007499) ZNF385D (ENSACLG00000007489) ube2e2 (ENSACLG00000007476) ube2e1 (ENSACLG00000007468) nr1d2a (ENSACLG00000007461) ENSACLG00000007452 ENSACLG00000007436 Burton s mouthbrooder MODERN SPECIES 327 otud7b (ENSHBUG00000008841) rbm8a (ENSHBUG00000008827) ntrk1 (ENSHBUG00000008795) PAQR6 (ENSHBUG00000000217) smg5 (ENSHBUG00000008654) SYNGAP1 (ENSHBUG00000008524) ENSHBUG00000008432 rgl2 (ENSHBUG00000008416) dnase2 (ENSHBUG00000008304) ENSHBUG00000001065 pbx2 (ENSHBUG00000008278) her7 (ENSHBUG00000008231) ENSHBUG00000008212 ENSHBUG00000008197 ENSHBUG00000008157 #17 BRD2 (ENSHBUG00000008131) #22 VMO1 (ENSHBUG00000008051) ENSHBUG00000008036 ENSHBUG00000008025 PLCL2 (ENSHBUG00000008003) ENSHBUG00000007961 ENSHBUG00000007886 si:dkey-82o10.4 (ENSHBUG00000007878) rab5ab (ENSHBUG00000007871) ENSHBUG00000007847 ube2e2 (ENSHBUG00000007782) ube2e1 (ENSHBUG00000007753) nr1d2a (ENSHBUG00000007724) ENSHBUG00000007676 Lyretail cichlid DUPLICATION Lyretail cichlid MODERN SPECIES 373 otud7b (ENSNBRG00000004572) rbm8a (ENSNBRG00000004541) ntrk1 (ENSNBRG00000004429) PAQR6 (ENSNBRG00000004397) smg5 (ENSNBRG00000004332) ENSNBRG00000004266 PHF1 (ENSNBRG00000004222) rgl2 (ENSNBRG00000004175) dnase2 (ENSNBRG00000004163) ENSNBRG00000004106 ENSNBRG00000004087 pbx2 (ENSNBRG00000004069) ENSNBRG00000004056 ENSNBRG00000004026 ENSNBRG00000003793 #17 brd2b (ENSNBRG00000003756) #22 BRD2 (ENSNBRG00000003729) #22 VMO1 (ENSNBRG00000003710) ENSNBRG00000003691 ENSNBRG00000003663 PLCL2 (ENSNBRG00000003643) ENSNBRG00000003602 si:dkey-82o10.4 (ENSNBRG00000003573) ENSNBRG00000003533 rab5ab (ENSNBRG00000003511) ENSNBRG00000003485 ube2e2 (ENSNBRG00000003465) ube2e1 (ENSNBRG00000003441) ENSNBRG00000003424 ENSNBRG00000003404 Lyretail cichlid MODERN SPECIES 373 rbm8a (ENSNBRG00000004541) ntrk1 (ENSNBRG00000004429) PAQR6 (ENSNBRG00000004397) smg5 (ENSNBRG00000004332) ENSNBRG00000004266 PHF1 (ENSNBRG00000004222) rgl2 (ENSNBRG00000004175) dnase2 (ENSNBRG00000004163) ENSNBRG00000004106 ENSNBRG00000004087 pbx2 (ENSNBRG00000004069) ENSNBRG00000004056 ENSNBRG00000004026 ENSNBRG00000003793 #17 brd2b (ENSNBRG00000003756) #22 BRD2 (ENSNBRG00000003729) #22 VMO1 (ENSNBRG00000003710) ENSNBRG00000003691 ENSNBRG00000003663 PLCL2 (ENSNBRG00000003643) ENSNBRG00000003602 si:dkey-82o10.4 (ENSNBRG00000003573) ENSNBRG00000003533 rab5ab (ENSNBRG00000003511) ENSNBRG00000003485 ube2e2 (ENSNBRG00000003465) ube2e1 (ENSNBRG00000003441) ENSNBRG00000003424 ENSNBRG00000003404 Midas cichlid MODERN SPECIES 299 ENSACIG00000001247 ntrk1 (ENSACIG00000001254) PAQR6 (ENSACIG00000001299) smg5 (ENSACIG00000001353) SYNGAP1 (ENSACIG00000001419) PHF1 (ENSACIG00000001474) rgl2 (ENSACIG00000001540) dnase2 (ENSACIG00000001586) ENSACIG00000001606 pbx2 (ENSACIG00000001624) her7 (ENSACIG00000001647) ENSACIG00000001660 ENSACIG00000001675 ENSACIG00000001709 #17 BRD2 (ENSACIG00000001934) #22 VMO1 (ENSACIG00000002148) ENSACIG00000002160 pcca (ENSACIG00000002187) ENSACIG00000002198 PLCL2 (ENSACIG00000002211) ENSACIG00000002221 si:dkey-82o10.4 (ENSACIG00000002250) ENSACIG00000002302 rab5ab (ENSACIG00000002327) ENSACIG00000002340 ube2e2 (ENSACIG00000002355) ube2e1 (ENSACIG00000002370) nr1d2a (ENSACIG00000002393) ENSACIG00000002436 ENSACIG00000002442 Atherinomorphae ANCESTRAL SPECIES ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000169840 ENSGT00940000163911.a.a.b.a.a.a.a.b ENSGT01030000234907 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000169840 ENSGT00940000163911.a.a.b.a.a.a.a.b ENSGT01030000234907 Aplocheiloidei ANCESTRAL SPECIES 2 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000154337.b ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000169840 ENSGT01030000234907 ENSGT00940000156196.a Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 193 otud7b (ENSKMAG00000014408) rbm8a (ENSKMAG00000014454) afp4 (ENSKMAG00000014474) ntrk1 (ENSKMAG00000014508) PAQR6 (ENSKMAG00000014542) smg5 (ENSKMAG00000014586) SYNGAP1 (ENSKMAG00000014642) ENSKMAG00000014670 rgl2 (ENSKMAG00000014716) dnase2 (ENSKMAG00000014776) ENSKMAG00000014786 pbx2 (ENSKMAG00000014820) ENSKMAG00000014855 ENSKMAG00000014864 ENSKMAG00000014892 #17 brd2b (ENSKMAG00000014926) #22 brd2b (ENSKMAG00000014941) #22 ENSKMAG00000014954 ENSKMAG00000014970 ENSKMAG00000014985 ENSKMAG00000015004 PLCL2 (ENSKMAG00000015032) Mangrove rivulus MODERN SPECIES 193 rbm8a (ENSKMAG00000014454) afp4 (ENSKMAG00000014474) ntrk1 (ENSKMAG00000014508) PAQR6 (ENSKMAG00000014542) smg5 (ENSKMAG00000014586) SYNGAP1 (ENSKMAG00000014642) ENSKMAG00000014670 rgl2 (ENSKMAG00000014716) dnase2 (ENSKMAG00000014776) ENSKMAG00000014786 pbx2 (ENSKMAG00000014820) ENSKMAG00000014855 ENSKMAG00000014864 ENSKMAG00000014892 #17 brd2b (ENSKMAG00000014926) #22 brd2b (ENSKMAG00000014941) #22 ENSKMAG00000014954 ENSKMAG00000014970 ENSKMAG00000014985 ENSKMAG00000015004 PLCL2 (ENSKMAG00000015032) Turquoise killifish MODERN SPECIES 1614 afp4 (ENSNFUG00015004984) NTRK1 (ENSNFUG00015005005) ENSNFUG00015005025 PAQR6 (ENSNFUG00015005029) SMG5 (ENSNFUG00015005066) SYNGAP1 (ENSNFUG00015005147) ENSNFUG00015005224 ENSNFUG00015005229 rgl2 (ENSNFUG00015005264) DNASE2 (ENSNFUG00015005306) ENSNFUG00015005318 PBX2 (ENSNFUG00015005329) ENSNFUG00015005346 ENSNFUG00015005354 ENSNFUG00015005368 #17 BRD2B (ENSNFUG00015005395) #22 VMO1 (ENSNFUG00015005415) RFTN1 (ENSNFUG00015005432) nod2 (ENSNFUG00015005451) ENSNFUG00015005483 PLCL2 (ENSNFUG00015005490) ENSNFUG00015009014 EFHB (ENSNFUG00015009106) RAB5AB (ENSNFUG00015009144) ZNF385D (ENSNFUG00015009166) ENSNFUG00015009177 UBE2E2 (ENSNFUG00015009191) OLA.21581 (ENSNFUG00015009220) ENSNFUG00015009246 nr1d2a (ENSNFUG00015009256) ENSNFUG00015009262 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00390000009726 ENSGT00940000161223.b ENSGT00390000013102.a.a ENSGT00940000161038 ENSGT01050000244971.C ENSGT00940000172196 ENSGT00390000015918 ENSGT00740000117171 ENSGT00610000087424 ENSGT00950000182929.B.b.b ENSGT00950000182929.B.a.a.f ENSGT00950000182929.B.a.a.e ENSGT00950000183111.b.b.l.a.b.b ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000169840 ENSGT00940000163911.a.a.b.a.a.a.a.b ENSGT01030000234907 Poeciliinae ANCESTRAL SPECIES ENSGT00390000009726 ENSGT00940000161223.b ENSGT00390000013102.a.a ENSGT00940000161038 ENSGT01050000244971.C ENSGT00940000172196 ENSGT00390000015918 ENSGT00740000117171 ENSGT00610000087424 ENSGT00950000182929.B.b.b ENSGT00950000182929.B.a.a.f ENSGT00950000182929.B.a.a.e ENSGT00950000183111.b.b.l.a.b.b ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000169840.f ENSGT01100000263473.a.b.g.b Poecilia ANCESTRAL SPECIES ENSGT00940000161223.b ENSGT00390000013102.a.a ENSGT00940000161038 ENSGT01050000244971.C ENSGT00940000172196 ENSGT00390000015918 ENSGT00740000117171 ENSGT00610000087424 ENSGT00950000182929.B.b.b ENSGT00950000182929.B.a.a.f ENSGT00950000182929.B.a.a.e ENSGT00950000183111.b.b.l.a.b.b.f ENSGT00950000183111.b.b.l.a.b.b.e ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT01100000263473.a.b.g.b ENSGT00940000156196.a NAME_6 ANCESTRAL SPECIES 336 ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 Amazon molly MODERN SPECIES 416 ENSPFOG00000007696 ENSPFOG00000007670 TAP1 (ENSPFOG00000007480) #17 BRD2 (ENSPFOG00000007315) #22 ENSPFOG00000007272 ENSPFOG00000007226 PLCL2 (ENSPFOG00000007151) Sailfin molly MODERN SPECIES 309 ENSPLAG00000019772 TAP1 (ENSPLAG00000019802) #17 ENSPLAG00000019813 #22 ENSPLAG00000019834 ENSPLAG00000019843 ENSPLAG00000019861 PLCL2 (ENSPLAG00000019879) ENSPLAG00000019909 Guppy MODERN SPECIES 446 ENSPREG00000004791 bcam (ENSPREG00000004719) ENSPREG00000004679 ENSPREG00000004661 apoa2 (ENSPREG00000004654) ENSPREG00000004646 ENSPREG00000004624 apoeb (ENSPREG00000004614) ENSPREG00000004600 ENSPREG00000004592 ENSPREG00000004528 ENSPREG00000004488 ENSPREG00000004372 ENSPREG00000004338 TAP1 (ENSPREG00000004235) #17 BRD2 (ENSPREG00000004149) #22 ENSPREG00000004130 ENSPREG00000004117 ENSPREG00000004098 PLCL2 (ENSPREG00000004061) ENSPREG00000003992 si:dkey-82o10.4 (ENSPREG00000003946) ENSPREG00000003912 rab5ab (ENSPREG00000003887) ENSPREG00000003866 ENSPREG00000003849 ENSPREG00000003838 tspan13a (ENSPREG00000003818) bag6 (ENSPREG00000003677) glrx3 (ENSPREG00000003648) ENSPREG00000003625 Platyfish MODERN SPECIES 17 taf12 (ENSXMAG00000014465) si:ch211-79k12.1 (ENSXMAG00000023036) cadm4 (ENSXMAG00000014459) rps19 (ENSXMAG00000024881) bcam (ENSXMAG00000018568) ENSXMAG00000018579 ENSXMAG00000026330 ENSXMAG00000025479 apoa2 (ENSXMAG00000018597) ENSXMAG00000029967 apoeb (ENSXMAG00000018601) ENSXMAG00000018603 ENSXMAG00000018608 ENSXMAG00000018613 TAP1 (ENSXMAG00000018614) #17 BRD2 (ENSXMAG00000018629) #22 ENSXMAG00000018653 ENSXMAG00000025035 ENSXMAG00000018655 PLCL2 (ENSXMAG00000018656) ENSXMAG00000018662 si:dkey-82o10.4 (ENSXMAG00000024846) ENSXMAG00000023769 rab5ab (ENSXMAG00000018687) ENSXMAG00000021593 ENSXMAG00000022169 ube2e2 (ENSXMAG00000018694) ube2e1 (ENSXMAG00000026946) nr1d2a (ENSXMAG00000018709) ENSXMAG00000021306 ENSXMAG00000021804 NAME_4 ANCESTRAL SPECIES 55 ENSGT00390000009726 ENSGT00940000161223.b ENSGT00390000013102.a.a ENSGT00940000161038 ENSGT01050000244971.C ENSGT00390000007913 ENSGT00390000015918 ENSGT00740000117171 ENSGT00610000087424 ENSGT00950000182929.B.b.b ENSGT00950000182929.B.a.a.f ENSGT00950000182929.B.a.a.e ENSGT00950000183111.b.b.l.a.b.b ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000174959 ENSGT00940000154337.b ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT01100000263473.a.b.g.b Mummichog DUPLICATION Mummichog MODERN SPECIES 2392 ENSFHEG00000007917 ENSFHEG00000008107 ENSFHEG00000000617 ENSFHEG00000008180 ENSFHEG00000008327 #17 ENSFHEG00000000573 #22 ENSFHEG00000008365 ENSFHEG00000008372 ENSFHEG00000008397 PLCL2 (ENSFHEG00000008421) ENSFHEG00000008485 si:dkey-82o10.4 (ENSFHEG00000008509) ENSFHEG00000008525 ENSFHEG00000008574 ZNF385D (ENSFHEG00000008669) ube2e2 (ENSFHEG00000008700) ube2e1 (ENSFHEG00000008719) nr1d2a (ENSFHEG00000008731) Mummichog MODERN SPECIES 70 ENSFHEG00000018172 #22 Sheepshead minnow MODERN SPECIES 178 ENSCVAG00000018412 ENSCVAG00000018429 lim2.5 (ENSCVAG00000018451) ENSCVAG00000018475 ENSCVAG00000018504 ENSCVAG00000018524 ENSCVAG00000018538 apoa2 (ENSCVAG00000018548) ENSCVAG00000018555 apoeb (ENSCVAG00000018559) ENSCVAG00000018568 ENSCVAG00000018584 ENSCVAG00000018601 ENSCVAG00000018708 ENSCVAG00000018733 #17 BRD2 (ENSCVAG00000018837) #22 ENSCVAG00000018940 ENSCVAG00000018955 ENSCVAG00000018971 ENSCVAG00000018996 PLCL2 (ENSCVAG00000019025) ENSCVAG00000019170 si:dkey-82o10.4 (ENSCVAG00000019192) ENSCVAG00000019219 rab5ab (ENSCVAG00000019248) ZNF385D (ENSCVAG00000019272) Oryzias ANCESTRAL SPECIES 2 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00510000051675.g.a ENSGT00510000051675.h.b.a ENSGT00510000051675.g.b ENSGT00390000006100 ENSGT00940000158230.b.a ENSGT00940000165149 ENSGT00940000166523 ENSGT00940000157244.a.b ENSGT00940000155333.B ENSGT00390000008765 ENSGT00940000177047.D ENSGT00940000167246.a ENSGT01030000234575.c.a.a.a.a.a.b.b.a ENSGT00940000167246.b ENSGT00940000157010.m Oryzias_b ANCESTRAL SPECIES 1 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT01000000218930.a.a ENSGT00700000104815.g ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00510000051675.g.a ENSGT00510000051675.h.b.a ENSGT00510000051675.g.b ENSGT00390000006100 ENSGT00940000158230.b.a ENSGT00940000165149 ENSGT00940000166523 ENSGT00940000157244.a.b ENSGT00940000155333.B ENSGT00390000008765 ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.a.b ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.b ENSGT01030000234575.c.a.a.a.a.a.b.b.a.h ENSGT00940000167246.b ENSGT00940000157010.m Javanese ricefish MODERN SPECIES 7 mtmr11 (ENSOJAG00000006618) otud7b (ENSOJAG00000006586) rbm8a (ENSOJAG00000006557) afp4 (ENSOJAG00000006529) ntrk1 (ENSOJAG00000006505) PAQR6 (ENSOJAG00000006479) smg5 (ENSOJAG00000005804) SYNGAP1 (ENSOJAG00000005637) PHF1 (ENSOJAG00000005536) rgl2 (ENSOJAG00000005407) dnase2 (ENSOJAG00000005393) pbx2 (ENSOJAG00000005367) ENSOJAG00000005348 ENSOJAG00000005345 ENSOJAG00000005333 ENSOJAG00000005309 #22 ENSOJAG00000005299 ENSOJAG00000005287 ENSOJAG00000005277 lamtor2 (ENSOJAG00000005223) rab25b (ENSOJAG00000005193) rab11al (ENSOJAG00000005141) ENSOJAG00000005130 lmna (ENSOJAG00000005058) ENSOJAG00000004929 gpatch4 (ENSOJAG00000004871) ENSOJAG00000004856 ENSOJAG00000004836 ENSOJAG00000004763 ENSOJAG00000004738 ENSOJAG00000004727 Indian medaka MODERN SPECIES 33 ntrk1 (ENSOMEG00000021500) PAQR6 (ENSOMEG00000021407) smg5 (ENSOMEG00000021330) SYNGAP1 (ENSOMEG00000021229) ENSOMEG00000021082 ENSOMEG00000021059 rgl2 (ENSOMEG00000020962) dnase2 (ENSOMEG00000020788) ENSOMEG00000020764 pbx2 (ENSOMEG00000020750) ENSOMEG00000020725 ENSOMEG00000020710 ENSOMEG00000000548 ENSOMEG00000020685 TAP1 (ENSOMEG00000020635) #17 BRD2 (ENSOMEG00000020558) #22 ENSOMEG00000020508 ENSOMEG00000020470 ENSOMEG00000020446 lamtor2 (ENSOMEG00000020398) rab25b (ENSOMEG00000020350) ENSOMEG00000020271 ENSOMEG00000020254 lmna (ENSOMEG00000020229) ENSOMEG00000020156 gpatch4 (ENSOMEG00000000529) ENSOMEG00000020092 ENSOMEG00000020082 ENSOMEG00000020071 ENSOMEG00000020059 ENSOMEG00000020042 Oryzias_a ANCESTRAL SPECIES 37 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000175842 ENSGT00940000166527 ENSGT00700000104815.g ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00510000051675.g.a ENSGT00510000051675.h.b.a ENSGT00510000051675.g.b ENSGT00390000006100 ENSGT00940000158230.b.a ENSGT00940000165149 ENSGT00940000166523 ENSGT00940000157244.a.b ENSGT00940000155333.B ENSGT00390000008765 ENSGT00940000177047.D.b ENSGT01030000234575.c.a.a.a.a.a.b.b.a.e ENSGT00940000167246.b ENSGT00940000157010.m ENSGT00390000016199.a Japanese Medaka HdrR MODERN SPECIES 7 otud7b (ENSORLG00000016275) rbm8a (ENSORLG00000016263) afp4 (ENSORLG00000016252) ntrk1 (ENSORLG00000023848) PAQR6 (ENSORLG00000016244) smg5 (ENSORLG00000016239) SYNGAP1 (ENSORLG00000016229) ENSORLG00000016201 rgl2 (ENSORLG00000016196) dnase2 (ENSORLG00000016180) ENSORLG00000022607 pbx2 (ENSORLG00000016171) her7 (ENSORLG00000016162) ENSORLG00000030036 TAP1 (ENSORLG00000016158) #17 ENSORLG00000016149 #22 ENSORLG00000027926 ENSORLG00000028393 ENSORLG00000027277 ENSORLG00000016141 ENSORLG00000026168 lamtor2 (ENSORLG00000016136) ENSORLG00000023550 rab25b (ENSORLG00000016135) rab11al (ENSORLG00000016126) ENSORLG00000024166 ENSORLG00000022707 lmna (ENSORLG00000016113) ENSORLG00000016110 ENSORLG00000016102 ENSORLG00000023907 Chinese medaka DUPLICATION Chinese medaka MODERN SPECIES 1244 bola1 (ENSOSIG00000012510) SV2A (ENSOSIG00000012528) mtmr11 (ENSOSIG00000013010) otud7b (ENSOSIG00000013015) afp4 (ENSOSIG00000013018) PAQR6 (ENSOSIG00000013020) smg5 (ENSOSIG00000013022) SYNGAP1 (ENSOSIG00000013041) ENSOSIG00000013187 rgl2 (ENSOSIG00000013189) dnase2 (ENSOSIG00000013192) ENSOSIG00000013193 pbx2 (ENSOSIG00000013197) ENSOSIG00000013200 TAP1 (ENSOSIG00000013202) #17 brd2b (ENSOSIG00000013328) #22 ENSOSIG00000013329 lamtor2 (ENSOSIG00000013332) rab25b (ENSOSIG00000013339) ENSOSIG00000013348 Chinese medaka MODERN SPECIES 2966 BRD2 (ENSOSIG00000003380) #22 Percomorphaceae_C ANCESTRAL SPECIES 2 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 Percomorphaceae_D ANCESTRAL SPECIES 2 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000160242.a ENSGT00940000165358 Anabantaria ANCESTRAL SPECIES 2 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488 ENSGT01100000263625.B ENSGT01030000235115 ENSGT00940000156196.a Anabantoidei ANCESTRAL SPECIES 3 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000177488 ENSGT01100000263625.B ENSGT00940000156196.a Climbing perch MODERN SPECIES 7 rbm8a (ENSATEG00000005630) afp4 (ENSATEG00000028682) ENSATEG00000025342 ntrk1 (ENSATEG00000005463) ENSATEG00000005447 smg5 (ENSATEG00000005348) ENSATEG00000005290 ENSATEG00000005287 rgl2 (ENSATEG00000005242) dnase2 (ENSATEG00000005230) ENSATEG00000005209 pbx2 (ENSATEG00000005174) ENSATEG00000005151 ENSATEG00000005138 ENSATEG00000005039 #17 ENSATEG00000005034 #22 ENSATEG00000005015 ENSATEG00000005007 ENSATEG00000004974 ENSATEG00000004933 ENSATEG00000004828 efhb (ENSATEG00000004785) rab5ab (ENSATEG00000004767) ZNF385D (ENSATEG00000004760) ube2e2 (ENSATEG00000004735) ENSATEG00000004685 nr1d2a (ENSATEG00000004676) ENSATEG00000004660 ENSATEG00000025528 ENSATEG00000004582 ENSATEG00000025964 Siamese fighting fish MODERN SPECIES 7 otud7b (ENSBSLG00000013769) rbm8a (ENSBSLG00000013774) ENSBSLG00000013786 ntrk1 (ENSBSLG00000014067) PAQR6 (ENSBSLG00000014162) smg5 (ENSBSLG00000014276) SYNGAP1 (ENSBSLG00000015193) PHF1 (ENSBSLG00000015396) rgl2 (ENSBSLG00000015431) dnase2 (ENSBSLG00000015520) ENSBSLG00000015526 pbx2 (ENSBSLG00000015536) her7 (ENSBSLG00000015560) ENSBSLG00000015571 ENSBSLG00000015596 #17 BRD2 (ENSBSLG00000016725) #22 ENSBSLG00000017090 ENSBSLG00000017112 ENSBSLG00000017164 PLCL2 (ENSBSLG00000017186) ENSBSLG00000017220 efhb (ENSBSLG00000017251) ENSBSLG00000017283 ENSBSLG00000017356 UBE2E2 (ENSBSLG00000017484) nr1d2a (ENSBSLG00000017637) ENSBSLG00000017661 ENSBSLG00000017676 ENSBSLG00000017696 ENSBSLG00000017841 ENSBSLG00000017854 Zig-zag eel MODERN SPECIES 7 otud7b (ENSMAMG00000028073) rbm8a (ENSMAMG00000010565) afp4 (ENSMAMG00000010579) ntrk1 (ENSMAMG00000010588) ENSMAMG00000010623 smg5 (ENSMAMG00000010683) ENSMAMG00000010739 ENSMAMG00000010747 rgl2 (ENSMAMG00000010763) dnase2 (ENSMAMG00000010809) ENSMAMG00000010815 pbx2 (ENSMAMG00000010824) ENSMAMG00000028340 ENSMAMG00000026570 ENSMAMG00000010898 #17 ENSMAMG00000010912 #22 ENSMAMG00000010935 ENSMAMG00000010947 ENSMAMG00000010962 ENSMAMG00000010974 ENSMAMG00000011041 ENSMAMG00000011147 rab5ab (ENSMAMG00000011160) ENSMAMG00000011172 ube2e2 (ENSMAMG00000011190) nr1d2a (ENSMAMG00000011205) ENSMAMG00000011233 ENSMAMG00000027740 ENSMAMG00000011302 ENSMAMG00000011311 ENSMAMG00000027493 Carangaria ANCESTRAL SPECIES 1 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000168259 ENSGT00940000154337.b ENSGT00940000160242.a ENSGT00940000165358 Carangaria_A ANCESTRAL SPECIES 27 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000158153.b ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a Seriola ANCESTRAL SPECIES 76 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 Greater amberjack MODERN SPECIES 44 dhx16 (ENSSDUG00000006948) ppt2a.1 (ENSSDUG00000007034) afp4 (ENSSDUG00000007059) ntrk1 (ENSSDUG00000007073) PAQR6 (ENSSDUG00000007108) smg5 (ENSSDUG00000007122) SYNGAP1 (ENSSDUG00000007196) ENSSDUG00000007232 rgl2 (ENSSDUG00000007256) dnase2 (ENSSDUG00000007284) pbx2 (ENSSDUG00000007301) her7 (ENSSDUG00000007329) her7 (ENSSDUG00000007342) ENSSDUG00000007346 TAP1 (ENSSDUG00000007363) #17 BRD2 (ENSSDUG00000007394) #22 ENSSDUG00000007409 ENSSDUG00000007420 VMO1 (ENSSDUG00000007441) Yellowtail amberjack MODERN SPECIES 2757 otud7b (ENSSLDG00000011700) rbm8a (ENSSLDG00000011664) afp4 (ENSSLDG00000011648) ntrk1 (ENSSLDG00000011591) PAQR6 (ENSSLDG00000011543) smg5 (ENSSLDG00000011418) SYNGAP1 (ENSSLDG00000011345) PHF1 (ENSSLDG00000011308) rgl2 (ENSSLDG00000011233) dnase2 (ENSSLDG00000011177) pbx2 (ENSSLDG00000011136) ENSSLDG00000011119 ENSSLDG00000011105 ENSSLDG00000011078 TAP1 (ENSSLDG00000011046) #17 BRD2 (ENSSLDG00000011021) #22 ENSSLDG00000010942 ENSSLDG00000010889 ENSSLDG00000010875 Barramundi perch MODERN SPECIES 104 rbm8a (ENSLCAG00010001353) afp4 (ENSLCAG00010001346) ntrk1 (ENSLCAG00010001325) PAQR6 (ENSLCAG00010001320) smg5 (ENSLCAG00010001297) SYNGAP1 (ENSLCAG00010001229) ENSLCAG00010001179 rgl2 (ENSLCAG00010001143) dnase2 (ENSLCAG00010001131) ENSLCAG00010001127 pbx2 (ENSLCAG00010001121) ENSLCAG00010001113 ENSLCAG00010001107 ENSLCAG00010001101 ENSLCAG00010001097 #17 BRD2 (ENSLCAG00010001091) #22 ENSLCAG00010001085 ENSLCAG00010000929 ENSLCAG00010000845 ENSLCAG00010000841 ENSLCAG00010000791 PLCL2 (ENSLCAG00010000764) ENSLCAG00010000751 si:dkey-82o10.4 (ENSLCAG00010000743) efhb (ENSLCAG00010000738) rab5ab (ENSLCAG00010000722) ENSLCAG00010000706 ENSLCAG00010000699 Pleuronectoidei ANCESTRAL SPECIES 3 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT01100000263473.a.b.g.b Tongue sole MODERN SPECIES 4 rps19 (ENSCSEG00000014287) ENSCSEG00000014276 ntrk1 (ENSCSEG00000014262) PAQR6 (ENSCSEG00000014255) smg5 (ENSCSEG00000014220) SYNGAP1 (ENSCSEG00000014158) ENSCSEG00000014136 rgl2 (ENSCSEG00000014118) dnase2 (ENSCSEG00000014110) ENSCSEG00000014105 pbx2 (ENSCSEG00000014086) ENSCSEG00000014079 ENSCSEG00000014075 ENSCSEG00000014068 ENSCSEG00000014028 #17 BRD2 (ENSCSEG00000014021) #22 ENSCSEG00000014015 ENSCSEG00000014011 ENSCSEG00000014009 ENSCSEG00000014007 ptpn23a (ENSCSEG00000013983) SCAP (ENSCSEG00000013928) elp6 (ENSCSEG00000013916) CSPG5 (ENSCSEG00000013884) ENSCSEG00000013849 ENSCSEG00000013843 dpy19l1l (ENSCSEG00000013809) tbx20 (ENSCSEG00000013797) herpud2 (ENSCSEG00000013788) ENSCSEG00000013778 ENSCSEG00000013772 Turbot MODERN SPECIES 7 rbm8a (ENSSMAG00000012998) afp4 (ENSSMAG00000032387) ntrk1 (ENSSMAG00000013025) ENSSMAG00000013042 smg5 (ENSSMAG00000013059) ENSSMAG00000013154 ENSSMAG00000013225 rgl2 (ENSSMAG00000013255) dnase2 (ENSSMAG00000013349) ENSSMAG00000013359 pbx2 (ENSSMAG00000013369) ENSSMAG00000013387 ENSSMAG00000031338 ENSSMAG00000028548 ENSSMAG00000013604 #17 ENSSMAG00000013629 #22 ENSSMAG00000013677 ENSSMAG00000034565 ENSSMAG00000013717 ENSSMAG00000013730 ENSSMAG00000013746 ENSSMAG00000013769 si:dkey-82o10.4 (ENSSMAG00000013812) ENSSMAG00000013816 ENSSMAG00000013833 ENSSMAG00000013846 ube2e2 (ENSSMAG00000013995) nr1d2a (ENSSMAG00000014016) ENSSMAG00000014030 ENSSMAG00000014046 ENSSMAG00000014146 Eupercaria ANCESTRAL SPECIES 1 ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000176137 ENSGT00390000004145.a ENSGT00940000174959 ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 Eupecaria_A ANCESTRAL SPECIES 2 ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198606 ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000176137 ENSGT00390000004145.a ENSGT00940000174959 ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 Ballan wrasse MODERN SPECIES 145 ntrk1 (ENSLBEG00000002004) PAQR6 (ENSLBEG00000002059) smg5 (ENSLBEG00000002145) SYNGAP1 (ENSLBEG00000002277) ENSLBEG00000002384 rgl2 (ENSLBEG00000002404) dnase2 (ENSLBEG00000002445) pbx2 (ENSLBEG00000002473) ENSLBEG00000002506 ENSLBEG00000002514 ENSLBEG00000002531 ENSLBEG00000002583 #17 BRD2 (ENSLBEG00000002606) #22 ENSLBEG00000002629 ENSLBEG00000002666 VMO1 (ENSLBEG00000002696) ENSLBEG00000002716 ENSLBEG00000002742 PLCL2 (ENSLBEG00000002768) ENSLBEG00000002834 si:dkey-82o10.4 (ENSLBEG00000002903) ENSLBEG00000002920 rab5ab (ENSLBEG00000002966) ZNF385D (ENSLBEG00000003004) ENSLBEG00000003057 ENSLBEG00000003105 ube2e2 (ENSLBEG00000003135) ube2e1 (ENSLBEG00000003170) Eupecaria_B ANCESTRAL SPECIES 4 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000176137 ENSGT00390000004145.a ENSGT00940000174959 ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 Perciformes ANCESTRAL SPECIES 3 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000168259 ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000158153.b ENSGT00940000165358 Cottioidei ANCESTRAL SPECIES 7 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000168259 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000165358 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000156196.a ENSGT00940000154222.d.a ENSGT00390000001883 Lumpfish MODERN SPECIES 17 otud7b (ENSCLMG00005019077) rbm8a (ENSCLMG00005019076) ntrk1 (ENSCLMG00005019075) PAQR6 (ENSCLMG00005019074) ENSCLMG00005019073 smg5 (ENSCLMG00005019063) SYNGAP1 (ENSCLMG00005019054) PHF1 (ENSCLMG00005019052) rgl2 (ENSCLMG00005019051) dnase2 (ENSCLMG00005019049) ENSCLMG00005019047 pbx2 (ENSCLMG00005019044) ENSCLMG00005019043 ENSCLMG00005019042 ENSCLMG00005019032 #17 BRD2 (ENSCLMG00005019025) #22 ENSCLMG00005019024 ENSCLMG00005019020 PLCL2 (ENSCLMG00005018976) ENSCLMG00005018973 ENSCLMG00005018970 rab5ab (ENSCLMG00005018968) ENSCLMG00005018967 ENSCLMG00005018963 nr1d2a (ENSCLMG00005018962) ENSCLMG00005018960 ENSCLMG00005018958 ENSCLMG00005018956 sdha (ENSCLMG00005018927) ccdc127a (ENSCLMG00005018925) ENSCLMG00005018923 Stickleback MODERN SPECIES 19 rbm8a (ENSGACG00000013157) afp4 (ENSGACG00000013154) ntrk1 (ENSGACG00000013150) PAQR6 (ENSGACG00000013148) smg5 (ENSGACG00000013142) SYNGAP1 (ENSGACG00000013133) PHF1 (ENSGACG00000013128) rgl2 (ENSGACG00000013112) dnase2 (ENSGACG00000013086) ENSGACG00000013084 pbx2 (ENSGACG00000013077) ENSGACG00000013074 ENSGACG00000013072 ENSGACG00000013070 ENSGACG00000013054 #17 ENSGACG00000013037 #22 VMO1 (ENSGACG00000013032) ENSGACG00000013026 PLCL2 (ENSGACG00000013021) ENSGACG00000013020 ENSGACG00000013013 ENSGACG00000013008 ENSGACG00000012989 ENSGACG00000012978 ube2e2 (ENSGACG00000012968) ube2e1 (ENSGACG00000012963) nr1d2a (ENSGACG00000012958) ENSGACG00000012955 septin7b (ENSGACG00000012939) ENSGACG00000012932 col28a1b (ENSGACG00000012913) Perciformes_a ANCESTRAL SPECIES 3 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00940000176137 ENSGT00390000004145.a ENSGT00530000063528.A.b ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000158153.b ENSGT00940000165358 ENSGT00940000155168.a.a Channel bull blenny MODERN SPECIES 7 mtmr11 (ENSCGOG00000005452) otud7b (ENSCGOG00000005461) rbm8a (ENSCGOG00000005468) ntrk1 (ENSCGOG00000005507) PAQR6 (ENSCGOG00000005522) smg5 (ENSCGOG00000005537) SYNGAP1 (ENSCGOG00000005962) SYNGAP1 (ENSCGOG00000005965) PHF1 (ENSCGOG00000006000) rgl2 (ENSCGOG00000006053) dnase2 (ENSCGOG00000006074) ENSCGOG00000006086 pbx2 (ENSCGOG00000006093) ENSCGOG00000006180 ENSCGOG00000006190 #17 BRD2 (ENSCGOG00000006342) #22 ENSCGOG00000006356 ENSCGOG00000006358 ENSCGOG00000006365 ENSCGOG00000006375 ENSCGOG00000006379 PLCL2 (ENSCGOG00000006389) ENSCGOG00000006390 ENSCGOG00000006391 si:dkey-82o10.4 (ENSCGOG00000006392) ENSCGOG00000006394 rab5ab (ENSCGOG00000006398) ZNF385D (ENSCGOG00000006444) ENSCGOG00000006480 ube2e2 (ENSCGOG00000006482) nr1d2a (ENSCGOG00000006531) Pike perch MODERN SPECIES 50 afp4 (ENSSLUG00000011739) ntrk1 (ENSSLUG00000011736) PAQR6 (ENSSLUG00000011725) smg5 (ENSSLUG00000011694) SYNGAP1 (ENSSLUG00000011626) PHF1 (ENSSLUG00000011514) rgl2 (ENSSLUG00000011493) dnase2 (ENSSLUG00000011488) ENSSLUG00000011483 pbx2 (ENSSLUG00000011463) ENSSLUG00000011452 ENSSLUG00000011448 ENSSLUG00000011444 ENSSLUG00000011438 TAP1 (ENSSLUG00000011387) #17 BRD2 (ENSSLUG00000011362) #22 ENSSLUG00000011353 ENSSLUG00000011306 VMO1 (ENSSLUG00000011297) ENSSLUG00000011291 ENSSLUG00000011288 PLCL2 (ENSSLUG00000011282) ENSSLUG00000011280 ENSSLUG00000011275 ENSSLUG00000011271 si:dkey-82o10.4 (ENSSLUG00000011267) efhb (ENSSLUG00000011257) rab5ab (ENSSLUG00000011253) ENSSLUG00000011239 ZNF385D (ENSSLUG00000011226) ube2e2 (ENSSLUG00000011214) Eupecaria_C ANCESTRAL SPECIES 2 ENSGT00940000159172 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00940000161847.b.b ENSGT00950000183127.c.a ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d.f ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000174959 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000163911.b.d Gilthead seabream MODERN SPECIES 8 otud7b (ENSSAUG00010014181) rbm8a (ENSSAUG00010014183) afp4 (ENSSAUG00010014184) ntrk1 (ENSSAUG00010014186) PAQR6 (ENSSAUG00010014187) smg5 (ENSSAUG00010014205) SYNGAP1 (ENSSAUG00010015441) PHF1 (ENSSAUG00010015488) rgl2 (ENSSAUG00010015490) dnase2 (ENSSAUG00010015495) ENSSAUG00010015496 pbx2 (ENSSAUG00010015497) ENSSAUG00010015499 ENSSAUG00010015501 ENSSAUG00010015502 #17 BRD2 (ENSSAUG00010015549) #22 ENSSAUG00010015551 ENSSAUG00010015553 VMO1 (ENSSAUG00010015935) ENSSAUG00010015940 ENSSAUG00010015945 ENSSAUG00010015948 PLCL2 (ENSSAUG00010015951) ENSSAUG00010015952 efhb (ENSSAUG00010015955) ENSSAUG00010015957 ENSSAUG00010015960 ZNF385D (ENSSAUG00010015964) ube2e2 (ENSSAUG00010015970) nr1d2a (ENSSAUG00010015973) ENSSAUG00010015976 Eupercaria_incertae_sedis ANCESTRAL SPECIES 2 ENSGT00730000111185.eb ENSGT00760000119652 ENSGT00940000159412 ENSGT00940000160567 ENSGT00940000154566 ENSGT00940000158438.n ENSGT00950000183180.a.b ENSGT00940000167370 ENSGT00390000002634.a.e ENSGT00940000166061.b ENSGT00940000166527 ENSGT00700000104815.g ENSGT00700000104815.h ENSGT00980000198621 ENSGT00940000159023 #17 ENSGT00940000153385.b.a.b.fd.b #22 ENSGT00390000009313 ENSGT00530000063609.b.w ENSGT00940000156439.d.f ENSGT00940000155660.b ENSGT00390000008096.C.a ENSGT00390000004145.a ENSGT00940000174959 ENSGT00940000154337.a.a ENSGT00940000160242.a ENSGT00940000155985 ENSGT00940000165550.a.b.a.b ENSGT00940000155168.a.a ENSGT00940000163911.b.d ENSGT01100000264199 ENSGT00940000156196.a European seabass MODERN SPECIES 6 mtmr11 (ENSDLAG00005009208) otud7b (ENSDLAG00005009187) afp4 (ENSDLAG00005009173) ntrk1 (ENSDLAG00005009140) ENSDLAG00005008726 smg5 (ENSDLAG00005007093) ENSDLAG00005006852 ENSDLAG00005006830 dnase2 (ENSDLAG00005006794) ENSDLAG00005006786 rgl2 (ENSDLAG00005006798) pbx2 (ENSDLAG00005029739) ENSDLAG00005006778 ENSDLAG00005006777 ENSDLAG00005006626 #17 ENSDLAG00005006608 #22 ENSDLAG00005006588 ENSDLAG00005006573 ENSDLAG00005006566 ENSDLAG00005006563 ENSDLAG00005006541 si:dkey-82o10.4 (ENSDLAG00005027369) ENSDLAG00005006486 rab5ab (ENSDLAG00005006454) ENSDLAG00005006428 ENSDLAG00005029927 nr1d2a (ENSDLAG00005006356) ENSDLAG00005006346 ENSDLAG00005030257 ENSDLAG00005002483 ENSDLAG00005032492 Large yellow croaker MODERN SPECIES 484 PAQR6 (ENSLCRG00005002751) smg5 (ENSLCRG00005002757) SYNGAP1 (ENSLCRG00005002796) PHF1 (ENSLCRG00005002907) ENSLCRG00005002911 rgl2 (ENSLCRG00005002916) dnase2 (ENSLCRG00005002931) ENSLCRG00005002934 pbx2 (ENSLCRG00005002936) ENSLCRG00005002941 ENSLCRG00005002943 ENSLCRG00005002946 ENSLCRG00005002949 ENSLCRG00005002952 ENSLCRG00005002961 #17 BRD2 (ENSLCRG00005003074) #22 ENSLCRG00005003077 ENSLCRG00005003086 VMO1 (ENSLCRG00005003089) ENSLCRG00005003090 ENSLCRG00005003098 PLCL2 (ENSLCRG00005003317) ENSLCRG00005003322 si:dkey-82o10.4 (ENSLCRG00005003333) rab5ab (ENSLCRG00005003337) ZNF385D (ENSLCRG00005003348) UBE2E2 (ENSLCRG00005003357) nr1d2a (ENSLCRG00005003368) ENSLCRG00005003370 ENSLCRG00005003371 ENSLCRG00005003373 Cod MODERN SPECIES 2 mtmr11 (ENSGMOG00000007368) otud7b (ENSGMOG00000036601) rbm8a (ENSGMOG00000007353) ntrk1 (ENSGMOG00000007339) ENSGMOG00000007332 smg5 (ENSGMOG00000007310) ENSGMOG00000007288 ENSGMOG00000007276 rgl2 (ENSGMOG00000007259) dnase2 (ENSGMOG00000031075) pbx2 (ENSGMOG00000007244) ENSGMOG00000007235 ENSGMOG00000032996 ENSGMOG00000024630 ENSGMOG00000007212 #17 ENSGMOG00000007204 #22 ENSGMOG00000026058 ENSGMOG00000037236 ENSGMOG00000007190 ENSGMOG00000007186 ENSGMOG00000026649 si:dkey-82o10.4 (ENSGMOG00000007169) ENSGMOG00000007130 rab5ab (ENSGMOG00000007127) ENSGMOG00000006299 ENSGMOG00000036598 ENSGMOG00000003473 ENSGMOG00000025578 ENSGMOG00000003450 ENSGMOG00000003465 ENSGMOG00000032761 Clupeocephala ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Atherinomorphae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 NAME_4 ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.gd #22 Sheepshead minnow MODERN SPECIES 454 ENSCVAG00000011527 #22 EPHX4 (ENSCVAG00000011534) ENSCVAG00000011543 C1orf146 (ENSCVAG00000011558) glmnb (ENSCVAG00000011788) gfi1ab (ENSCVAG00000011828) EVI5 (ENSCVAG00000012066) rpl5b (ENSCVAG00000012116) DIPK1A (ENSCVAG00000012149) ENSCVAG00000012160 scinla (ENSCVAG00000012206) zgc:109982 (ENSCVAG00000012238) dr1 (ENSCVAG00000012251) GNG12 (ENSCVAG00000012260) gadd45ab (ENSCVAG00000012278) ENSCVAG00000012301 Elephant shark MODERN SPECIES 1562 ENSCMIG00000014897 wdr5 (ENSCMIG00000014900) brd2a (ENSCMIG00000014906) #22 VAV2 (ENSCMIG00000014922) sardh (ENSCMIG00000015038) FAM163B (ENSCMIG00000015041) dbh (ENSCMIG00000015042) ADAMTSL2 (ENSCMIG00000015047) mymk (ENSCMIG00000015058) ENSCMIG00000015060 ENSCMIG00000015067 mrps2 (ENSCMIG00000015072) dipk1b (ENSCMIG00000015079) AGPAT1 (ENSCMIG00000015082) pole3 (ENSCMIG00000015083) rpl12 (ENSCMIG00000015085) lrsam1 (ENSCMIG00000015087) FKBP15 (ENSCMIG00000015100)