Theria ANCESTRAL SPECIES 4 ENSGT00940000160798 ENSGT00920000149187 ENSGT00940000162382 ENSGT00940000155779.a.b ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00980000198488.n ##30 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 ENSGT00920000150736 Eutheria ANCESTRAL SPECIES 9 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000161847 ENSGT00940000155371 #11 ENSGT00940000154993 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993 #12 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993 #12 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Glires ANCESTRAL SPECIES 5 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993 #12 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.l #12 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Cricetidae ANCESTRAL SPECIES 9 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b ##30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.l #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Prairie vole MODERN SPECIES 352 ENSMOCG00000011431 #7 Btnl1 (ENSMOCG00000018715) #8 Btnl2 (ENSMOCG00000014437) #9 H2-Ea (ENSMOCG00000008786) #10 ENSMOCG00000019721 #11 ENSMOCG00000017941 #12 ENSMOCG00000013355 #13 H2-Ab1 (ENSMOCG00000008439) #14 H2-Ob (ENSMOCG00000008562) #15 Tap2 (ENSMOCG00000022898) #16 Psmb8 (ENSMOCG00000014719) #17 Tap1 (ENSMOCG00000019762) #18 Psmb9 (ENSMOCG00000005369) #19 ENSMOCG00000022309 #20 H2-DMa (ENSMOCG00000002744) #21 Brd2 (ENSMOCG00000016368) #22 H2-Oa (ENSMOCG00000020236) #23 ENSMOCG00000010963 #24 Col11a2 (ENSMOCG00000016852) #25 Rxrb (ENSMOCG00000000374) #26 Slc39a7 (ENSMOCG00000019993) #27 Hsd17b8 (ENSMOCG00000001695) #28 Ring1 (ENSMOCG00000020973) #29 ENSMOCG00000014473 #30 Vps52 (ENSMOCG00000004229) #31 Rps18 (ENSMOCG00000018024) #32 B3galt4 (ENSMOCG00000011979) #33 Wdr46 (ENSMOCG00000014412) #34 Pfdn6 (ENSMOCG00000022424) #35 Rgl2 (ENSMOCG00000022698) #36 Tapbp (ENSMOCG00000010072) #37 Northern American deer mouse MODERN SPECIES 13 Btnl2 (ENSPEMG00000007431) #9 H2-Ea (ENSPEMG00000008261) #10 H2-Eb2 (ENSPEMG00000006456) ##12 H2-Eb1 (ENSPEMG00000002889) #11 ENSPEMG00000012679 #13 ENSPEMG00000015401 #14 ENSPEMG00000007095 #13 ENSPEMG00000012719 #14 H2-Ob (ENSPEMG00000001796) #15 Tap2 (ENSPEMG00000010503) #16 Psmb8 (ENSPEMG00000012170) #17 Tap1 (ENSPEMG00000012461) #18 Psmb9 (ENSPEMG00000009609) #19 ENSPEMG00000018040 #20 H2-DMa (ENSPEMG00000013203) #21 Brd2 (ENSPEMG00000018138) #22 H2-Oa (ENSPEMG00000011158) #23 ENSPEMG00000015442 #24 ENSPEMG00000026148 Col11a2 (ENSPEMG00000016918) #25 Rxrb (ENSPEMG00000018454) #26 Slc39a7 (ENSPEMG00000003403) #27 Hsd17b8 (ENSPEMG00000012925) #28 Ring1 (ENSPEMG00000019238) #29 ENSPEMG00000024622 ##30 ENSPEMG00000030975 ENSPEMG00000030319 Rps18 (ENSPEMG00000005058) #32 B3galt4 (ENSPEMG00000004762) #33 Wdr46 (ENSPEMG00000019179) #34 Pfdn6 (ENSPEMG00000005228) #35 Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000154993.k.b.b ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 Chinese hamster chok1gshd MODERN SPECIES 303 ENSCGRG00001001955 #11 Btnl1 (ENSCGRG00001017970) #8 Btnl2 (ENSCGRG00001016923) #9 H2-Ea (ENSCGRG00001015369) #10 ENSCGRG00001015049 #11 ENSCGRG00001021279 ##12 H2-Aa (ENSCGRG00001020824) #13 H2-Ab1 (ENSCGRG00001020630) #14 H2-Ob (ENSCGRG00001020078) #15 ENSCGRG00001019448 Psmb8 (ENSCGRG00001018009) #17 Tap1 (ENSCGRG00001009114) #18 Psmb9 (ENSCGRG00001007415) #19 ENSCGRG00001001555 #20 H2-DMa (ENSCGRG00001000682) #21 Brd2 (ENSCGRG00001018148) #22 H2-Oa (ENSCGRG00001013616) #23 ENSCGRG00001009189 #24 ENSCGRG00001007476 Col11a2 (ENSCGRG00001016209) #25 Rxrb (ENSCGRG00001000192) #26 Slc39a7 (ENSCGRG00001022298) #27 Hsd17b8 (ENSCGRG00001003834) #28 Ring1 (ENSCGRG00001001992) #29 ENSCGRG00001000484 ##30 ENSCGRG00001000045 ENSCGRG00001001839 ENSCGRG00001020054 ##30 ENSCGRG00001018024 ##30 ENSCGRG00001013282 ##30 ENSCGRG00001018149 ##30 Golden Hamster MODERN SPECIES 856 Notch4 (ENSMAUG00000015895) ENSMAUG00000009410 ENSMAUG00000015609 #7 Btnl1 (ENSMAUG00000016817) #8 Btnl2 (ENSMAUG00000003530) #9 H2-Eb2 (ENSMAUG00000018151) ##12 H2-Aa (ENSMAUG00000003363) #13 H2-Ab1 (ENSMAUG00000020395) #14 H2-Ob (ENSMAUG00000007698) #15 Tap2 (ENSMAUG00000015081) #16 Psmb8 (ENSMAUG00000003396) #17 Tap1 (ENSMAUG00000017718) #18 Psmb9 (ENSMAUG00000007584) #19 ENSMAUG00000008923 #20 H2-DMa (ENSMAUG00000000861) #21 Brd2 (ENSMAUG00000006799) #22 Col11a2 (ENSMAUG00000021348) #25 Rxrb (ENSMAUG00000009043) #26 Slc39a7 (ENSMAUG00000015255) #27 Hsd17b8 (ENSMAUG00000013407) #28 Ring1 (ENSMAUG00000012254) #29 Murinae ANCESTRAL SPECIES 18 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mus ANCESTRAL SPECIES 16 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00980000198488.m.a.b.a.b.a.a.a.c #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mus_A ANCESTRAL SPECIES 10 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mus_B ANCESTRAL SPECIES 9 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.`b #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mouse MODERN SPECIES 8 Btnl1 (ENSMUSG00000062638) #8 Btnl2 (ENSMUSG00000024340) #9 H2-Ea (ENSMUSG00000036322) #10 H2-Eb2 (ENSMUSG00000067341) ##12 H2-Eb1 (ENSMUSG00000060586) #11 H2-Aa (ENSMUSG00000036594) #13 H2-Ab1 (ENSMUSG00000073421) #14 H2-Ob (ENSMUSG00000041538) #15 Tap2 (ENSMUSG00000024339) #16 Psmb8 (ENSMUSG00000024338) #17 Tap1 (ENSMUSG00000037321) #18 Psmb9 (ENSMUSG00000096727) #19 H2-DMb1 (ENSMUSG00000079547) #20 H2-DMb2 (ENSMUSG00000037548) #20 H2-DMa (ENSMUSG00000037649) #21 Brd2 (ENSMUSG00000024335) #22 H2-Oa (ENSMUSG00000024334) #23 Col11a2 (ENSMUSG00000024330) #25 Rxrb (ENSMUSG00000039656) #26 Slc39a7 (ENSMUSG00000024327) #27 Hsd17b8 (ENSMUSG00000073422) #28 Ring1 (ENSMUSG00000024325) #29 H2-K1 (ENSMUSG00000061232) #30 Vps52 (ENSMUSG00000024319) #31 Rps18 (ENSMUSG00000008668) #32 B3galt4 (ENSMUSG00000067370) #33 Wdr46 (ENSMUSG00000024312) #34 Pfdn6 (ENSMUSG00000024309) #35 Rgl2 (ENSMUSG00000041354) #36 Zbtb22 (ENSMUSG00000051390) Tapbp (ENSMUSG00000024308) #37 Mus_C ANCESTRAL SPECIES 9 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b.b ##12 ENSGT00940000155371 #11 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a #30 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.`b #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Steppe mouse MODERN SPECIES 2564 Btnl1 (ENSMSIG00000010748) #8 Btnl2 (ENSMSIG00000010760) #9 H2-Ea (ENSMSIG00000010776) #10 H2-Eb2 (ENSMSIG00000010788) ##12 ENSMSIG00000010807 #11 H2-Aa (ENSMSIG00000010823) #13 ENSMSIG00000010843 #14 H2-Ob (ENSMSIG00000010868) #15 Tap2 (ENSMSIG00000010919) #16 ENSMSIG00000010972 Psmb8 (ENSMSIG00000010986) #17 ENSMSIG00000011012 #18 Psmb9 (ENSMSIG00000011042) #19 H2-DMb1 (ENSMSIG00000011055) #20 H2-DMa (ENSMSIG00000011088) #21 Brd2 (ENSMSIG00000011118) #22 H2-Oa (ENSMSIG00000011198) #23 ENSMSIG00000011214 #24 Col11a2 (ENSMSIG00000011347) #25 Rxrb (ENSMSIG00000012091) #26 Slc39a7 (ENSMSIG00000012137) #27 ENSMSIG00000012153 #28 Ring1 (ENSMSIG00000012190) #29 ENSMSIG00000012243 ENSMSIG00000012249 #30 Vps52 (ENSMSIG00000012295) #31 Rps18 (ENSMSIG00000012382) #32 B3galt4 (ENSMSIG00000012406) #33 Wdr46 (ENSMSIG00000012419) #34 Pfdn6 (ENSMSIG00000012469) #35 Rgl2 (ENSMSIG00000012505) #36 spretus MODERN SPECIES 8 Btnl1 (MGP_SPRETEiJ_G0022363) #8 Btnl2 (MGP_SPRETEiJ_G0022362) #9 H2-Eb2 (MGP_SPRETEiJ_G0022361) ##12 MGP_SPRETEiJ_G0022360 #11 H2-Aa (MGP_SPRETEiJ_G0022359) #13 H2-Ab1 (MGP_SPRETEiJ_G0022358) #14 H2-Ob (MGP_SPRETEiJ_G0022357) #15 MGP_SPRETEiJ_G0022356 Tap2 (MGP_SPRETEiJ_G0022355) #16 Psmb8 (MGP_SPRETEiJ_G0022354) #17 Tap1 (MGP_SPRETEiJ_G0022353) #18 Psmb9 (MGP_SPRETEiJ_G0022352) #19 H2-DMb2 (MGP_SPRETEiJ_G0022351) #20 MGP_SPRETEiJ_G0022350 #20 H2-DMa (MGP_SPRETEiJ_G0022349) #21 Brd2 (MGP_SPRETEiJ_G0022348) #22 H2-Oa (MGP_SPRETEiJ_G0022347) #23 Col11a2 (MGP_SPRETEiJ_G0022346) #25 Rxrb (MGP_SPRETEiJ_G0022345) #26 Slc39a7 (MGP_SPRETEiJ_G0022344) #27 Hsd17b8 (MGP_SPRETEiJ_G0022343) #28 Ring1 (MGP_SPRETEiJ_G0022342) #29 MGP_SPRETEiJ_G0022340 ##32 B3galt4 (MGP_SPRETEiJ_G0022339) #33 Wdr46 (MGP_SPRETEiJ_G0022338) #34 Pfdn6 (MGP_SPRETEiJ_G0022337) #35 Rgl2 (MGP_SPRETEiJ_G0022336) #36 Zbtb22 (MGP_SPRETEiJ_G0022335) Tapbp (MGP_SPRETEiJ_G0022334) #37 Daxx (MGP_SPRETEiJ_G0022333) Cd320 (MGP_SPRETEiJ_G0022332) Ryukyu mouse MODERN SPECIES 8 Btnl1 (MGP_CAROLIEiJ_G0021457) #8 Btnl2 (MGP_CAROLIEiJ_G0021456) #9 H2-Eb2 (MGP_CAROLIEiJ_G0021455) ##12 MGP_CAROLIEiJ_G0021454 #11 H2-Aa (MGP_CAROLIEiJ_G0021453) #13 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #14 H2-Ob (MGP_CAROLIEiJ_G0021451) #15 MGP_CAROLIEiJ_G0021450 Tap2 (MGP_CAROLIEiJ_G0021449) #16 Psmb8 (MGP_CAROLIEiJ_G0021448) #17 Tap1 (MGP_CAROLIEiJ_G0021447) #18 Psmb9 (MGP_CAROLIEiJ_G0021446) #19 MGP_CAROLIEiJ_G0021445 #20 MGP_CAROLIEiJ_G0021444 #20 H2-DMa (MGP_CAROLIEiJ_G0021443) #21 Brd2 (MGP_CAROLIEiJ_G0021442) #22 H2-Oa (MGP_CAROLIEiJ_G0021441) #23 Col11a2 (MGP_CAROLIEiJ_G0021440) #25 Rxrb (MGP_CAROLIEiJ_G0021439) #26 Slc39a7 (MGP_CAROLIEiJ_G0021438) #27 Hsd17b8 (MGP_CAROLIEiJ_G0021437) #28 Ring1 (MGP_CAROLIEiJ_G0021436) #29 MGP_CAROLIEiJ_G0021435 #30 MGP_CAROLIEiJ_G0021434 #30 MGP_CAROLIEiJ_G0021432 MGP_CAROLIEiJ_G0021431 MGP_CAROLIEiJ_G0021430 ##30 MGP_CAROLIEiJ_G0021429 ##30 Rps18 (MGP_CAROLIEiJ_G0021428) #32 B3galt4 (MGP_CAROLIEiJ_G0021427) #33 Wdr46 (MGP_CAROLIEiJ_G0021426) #34 Shrew mouse MODERN SPECIES 9 MGP_PahariEiJ_G0020455 #7 Tsbp1 (MGP_PahariEiJ_G0020454) Btnl1 (MGP_PahariEiJ_G0020453) #8 Btnl2 (MGP_PahariEiJ_G0020452) #9 H2-Eb2 (MGP_PahariEiJ_G0020451) ##12 MGP_PahariEiJ_G0020450 #11 H2-Aa (MGP_PahariEiJ_G0020449) #13 H2-Ab1 (MGP_PahariEiJ_G0020448) #14 H2-Ob (MGP_PahariEiJ_G0020447) #15 MGP_PahariEiJ_G0020446 Tap2 (MGP_PahariEiJ_G0020445) #16 Psmb8 (MGP_PahariEiJ_G0020444) #17 Tap1 (MGP_PahariEiJ_G0020443) #18 Psmb9 (MGP_PahariEiJ_G0020442) #19 H2-DMa (MGP_PahariEiJ_G0020441) #21 Brd2 (MGP_PahariEiJ_G0020440) #22 H2-Oa (MGP_PahariEiJ_G0020439) #23 Col11a2 (MGP_PahariEiJ_G0020438) #25 Rxrb (MGP_PahariEiJ_G0020437) #26 Slc39a7 (MGP_PahariEiJ_G0020436) #27 Hsd17b8 (MGP_PahariEiJ_G0020435) #28 Ring1 (MGP_PahariEiJ_G0020434) #29 MGP_PahariEiJ_G0020433 #32 B3galt4 (MGP_PahariEiJ_G0020432) #33 Wdr46 (MGP_PahariEiJ_G0020431) #34 Pfdn6 (MGP_PahariEiJ_G0020430) #35 Rgl2 (MGP_PahariEiJ_G0020429) #36 Zbtb22 (MGP_PahariEiJ_G0020428) Tapbp (MGP_PahariEiJ_G0020427) #37 Daxx (MGP_PahariEiJ_G0020426) Cd320 (MGP_PahariEiJ_G0020425) Rat MODERN SPECIES 12 Tsbp1 (ENSRNOG00000039398) Btnl3 (ENSRNOG00000039396) #8 Btnl2 (ENSRNOG00000028541) #9 RT1-Da (ENSRNOG00000032844) #10 RT1-Db2 (ENSRNOG00000030431) #11 RT1-Db1 (ENSRNOG00000033215) #11 RT1-Ba (ENSRNOG00000000451) #13 RT1-Bb (ENSRNOG00000032708) #14 RT1-DOb (ENSRNOG00000000454) #15 Tap2 (ENSRNOG00000000455) #16 Psmb8 (ENSRNOG00000000456) #17 Tap1 (ENSRNOG00000000457) #18 Psmb9 (ENSRNOG00000000459) #19 RT1-DMb (ENSRNOG00000049491) #20 RT1-DMa (ENSRNOG00000066773) #21 Brd2 (ENSRNOG00000000461) #22 RT1-DOa (ENSRNOG00000026762) #23 RT1-Ha (ENSRNOG00000045908) #24 RT1-Hb-ps1 (ENSRNOG00000061936) Col11a2 (ENSRNOG00000000463) #25 Rxrb (ENSRNOG00000000464) #26 Slc39a7 (ENSRNOG00000000465) #27 Hsd17b8 (ENSRNOG00000000466) #28 Ring1 (ENSRNOG00000000467) #29 Vps52 (ENSRNOG00000000470) #31 ENSRNOG00000062487 ENSRNOG00000069209 B3galt4 (ENSRNOG00000000471) #33 Wdr46 (ENSRNOG00000031171) #34 Pfdn6 (ENSRNOG00000000473) #35 Rgl2 (ENSRNOG00000000474) #36 Upper Galilee mountains blind mole rat MODERN SPECIES 369 Psmb8 (ENSNGAG00000001376) #17 Tap1 (ENSNGAG00000012692) #18 Psmb9 (ENSNGAG00000022287) #19 ENSNGAG00000015143 #20 H2-DMa (ENSNGAG00000022770) #21 Brd2 (ENSNGAG00000022459) #22 H2-Oa (ENSNGAG00000015259) #23 ENSNGAG00000014641 Lesser Egyptian jerboa MODERN SPECIES 41 H2-Ob (ENSJJAG00000022338) #15 ENSJJAG00000003836 Tap2 (ENSJJAG00000004300) #16 Psmb8 (ENSJJAG00000023598) #17 Tap1 (ENSJJAG00000022861) #18 Psmb9 (ENSJJAG00000022884) #19 ENSJJAG00000004664 #20 H2-DMa (ENSJJAG00000012555) #21 Brd2 (ENSJJAG00000010183) #22 H2-Oa (ENSJJAG00000000542) #23 ENSJJAG00000023713 Col11a2 (ENSJJAG00000010448) #25 Rxrb (ENSJJAG00000004710) #26 Slc39a7 (ENSJJAG00000014121) #27 Hsd17b8 (ENSJJAG00000021794) #28 Ring1 (ENSJJAG00000022246) #29 Vps52 (ENSJJAG00000020884) #31 Rps18 (ENSJJAG00000018899) #32 Wdr46 (ENSJJAG00000021960) #34 Pfdn6 (ENSJJAG00000009874) #35 ENSJJAG00000023644 ENSJJAG00000021860 #36 ENSJJAG00000000854 #37 Daxx (ENSJJAG00000022212) Kangaroo rat MODERN SPECIES 519 Gpsm3 (ENSDORG00000025609) ENSDORG00000009936 ENSDORG00000028297 H2-Ea (ENSDORG00000014782) #10 ENSDORG00000024908 #11 ENSDORG00000029602 #12 ENSDORG00000006991 #12 ENSDORG00000011904 #11 ENSDORG00000008310 #15 Tap2 (ENSDORG00000008311) #16 Psmb8 (ENSDORG00000028592) #17 Tap1 (ENSDORG00000029698) #18 Psmb9 (ENSDORG00000006231) #19 ENSDORG00000005172 #20 ENSDORG00000005173 #21 Brd2 (ENSDORG00000004497) #22 H2-Oa (ENSDORG00000004499) #23 ENSDORG00000004500 #24 ENSDORG00000024606 Col11a2 (ENSDORG00000013815) #25 Rxrb (ENSDORG00000013816) #26 Slc39a7 (ENSDORG00000013818) #27 Hsd17b8 (ENSDORG00000013819) #28 Ring1 (ENSDORG00000013820) #29 Vps52 (ENSDORG00000013822) #31 ENSDORG00000013825 #32 B3galt4 (ENSDORG00000013826) #33 Wdr46 (ENSDORG00000013827) #34 ENSDORG00000013828 #35 Rgl2 (ENSDORG00000013829) #36 Tapbp (ENSDORG00000013835) #37 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000162892 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00940000162450 #7 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b.p #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00980000198621 ENSGT00940000162450 #7 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d.o ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Long-tailed chinchilla MODERN SPECIES 144 ENSCLAG00000011744 #7 ENSCLAG00000015677 #8 BTNL2 (ENSCLAG00000007142) #9 HLA-DRA (ENSCLAG00000009768) #10 ENSCLAG00000013098 #11 ENSCLAG00000016042 #11 ENSCLAG00000009507 #13 HLA-DQB2 (ENSCLAG00000011869) #14 HLA-DOB (ENSCLAG00000011735) #15 TAP2 (ENSCLAG00000012654) #16 PSMB8 (ENSCLAG00000006990) #17 TAP1 (ENSCLAG00000008052) #18 PSMB9 (ENSCLAG00000007918) #19 HLA-DMB (ENSCLAG00000008468) #20 HLA-DMA (ENSCLAG00000014679) #21 BRD2 (ENSCLAG00000009750) #22 HLA-DOA (ENSCLAG00000011531) #23 HLA-DPB1 (ENSCLAG00000013126) HLA-DPA1 (ENSCLAG00000010668) #24 COL11A2 (ENSCLAG00000007783) #25 RXRB (ENSCLAG00000013699) #26 SLC39A7 (ENSCLAG00000014475) #27 HSD17B8 (ENSCLAG00000007885) #28 RING1 (ENSCLAG00000009149) #29 VPS52 (ENSCLAG00000008115) #31 RPS18 (ENSCLAG00000008982) ##32 WDR46 (ENSCLAG00000007512) #34 PFDN6 (ENSCLAG00000010475) #35 RGL2 (ENSCLAG00000009780) #36 TAPBP (ENSCLAG00000010992) #37 DAXX (ENSCLAG00000010016) Degu MODERN SPECIES 46 ENSODEG00000017653 ENSODEG00000017401 ENSODEG00000017414 #9 ENSODEG00000017398 ENSODEG00000017435 ##12 ENSODEG00000017402 ##12 ENSODEG00000017510 #13 ENSODEG00000017249 #14 HLA-DOB (ENSODEG00000017495) #15 TAP1 (ENSODEG00000017484) #18 PSMB9 (ENSODEG00000017656) #19 TAP2 (ENSODEG00000017797) #16 PSMB8 (ENSODEG00000017662) #17 HLA-DMB (ENSODEG00000017802) #20 ENSODEG00000017381 #21 BRD2 (ENSODEG00000017239) #22 HLA-DOA (ENSODEG00000017569) #23 HLA-DPA1 (ENSODEG00000017716) #24 COL11A2 (ENSODEG00000017513) #25 RXRB (ENSODEG00000017146) #26 SLC39A7 (ENSODEG00000017361) #27 HSD17B8 (ENSODEG00000017486) #28 RING1 (ENSODEG00000017691) #29 VPS52 (ENSODEG00000017744) #31 ENSODEG00000017344 ##32 B3GALT4 (ENSODEG00000017281) #33 WDR46 (ENSODEG00000017342) #34 ENSODEG00000017649 #35 RGL2 (ENSODEG00000017326) #36 TAPBP (ENSODEG00000017301) #37 DAXX (ENSODEG00000017044) Guinea pig MODERN SPECIES 15 ENSCPOG00000023019 #8 BTNL2 (ENSCPOG00000004277) #9 HLA-DRA (ENSCPOG00000012309) #10 ENSCPOG00000036465 #11 ENSCPOG00000003574 ##12 ENSCPOG00000040083 ##12 ENSCPOG00000014463 HLA-DQB2 (ENSCPOG00000038606) #14 HLA-DOB (ENSCPOG00000033895) #15 TAP2 (ENSCPOG00000038951) #16 PSMB8 (ENSCPOG00000000729) #17 TAP1 (ENSCPOG00000026988) #18 PSMB9 (ENSCPOG00000002121) #19 HLA-DMB (ENSCPOG00000002810) #20 HLA-DMA (ENSCPOG00000015044) #21 BRD2 (ENSCPOG00000002811) #22 HLA-DOA (ENSCPOG00000012562) #23 ENSCPOG00000002427 #24 ENSCPOG00000032859 ENSCPOG00000024142 ENSCPOG00000035477 #24 COL11A2 (ENSCPOG00000020466) #25 RXRB (ENSCPOG00000013936) #26 SLC39A7 (ENSCPOG00000023790) #27 HSD17B8 (ENSCPOG00000013940) #28 RING1 (ENSCPOG00000013943) #29 VPS52 (ENSCPOG00000013947) #31 RPS18 (ENSCPOG00000019675) #32 B3GALT4 (ENSCPOG00000012731) #33 WDR46 (ENSCPOG00000012733) #34 PFDN6 (ENSCPOG00000019520) #35 Naked mole-rat female MODERN SPECIES 4 GPSM3 (ENSHGLG00000012807) HLA-DRA (ENSHGLG00000012243) #10 ENSHGLG00000012074 ##12 ENSHGLG00000011873 ##12 ENSHGLG00000011613 ##12 ENSHGLG00000011398 ENSHGLG00000043086 HLA-DQB2 (ENSHGLG00000038840) #14 HLA-DOB (ENSHGLG00000016652) #15 TAP2 (ENSHGLG00000019356) #16 PSMB8 (ENSHGLG00000017087) #17 TAP1 (ENSHGLG00000017081) #18 PSMB9 (ENSHGLG00000036914) #19 HLA-DMB (ENSHGLG00000017060) #20 HLA-DMA (ENSHGLG00000017048) #21 BRD2 (ENSHGLG00000019334) #22 HLA-DOA (ENSHGLG00000019255) #23 HLA-DPA1 (ENSHGLG00000019266) #24 HLA-DPB1 (ENSHGLG00000019389) COL11A2 (ENSHGLG00000018531) #25 RXRB (ENSHGLG00000018456) #26 SLC39A7 (ENSHGLG00000018434) #27 HSD17B8 (ENSHGLG00000019497) #28 RING1 (ENSHGLG00000019474) #29 VPS52 (ENSHGLG00000017226) #31 B3GALT4 (ENSHGLG00000046221) #33 WDR46 (ENSHGLG00000017190) #34 PFDN6 (ENSHGLG00000017170) #35 RGL2 (ENSHGLG00000017158) #36 TAPBP (ENSHGLG00000017138) #37 ZBTB22 (ENSHGLG00000017146) Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ##12 ENSGT00940000155371 #11 ENSGT00940000154993.k.a ##12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Eurasian red squirrel MODERN SPECIES 16 HLA-DRA (ENSSVLG00005007588) #10 ENSSVLG00005007546 ##12 ENSSVLG00005007511 #11 ENSSVLG00005007482 ##12 ENSSVLG00005007455 #13 HLA-DQB2 (ENSSVLG00005007368) #14 ENSSVLG00005007173 #13 ENSSVLG00005006864 #14 HLA-DOB (ENSSVLG00005006746) #15 TAP2 (ENSSVLG00005006696) #16 PSMB8 (ENSSVLG00005006647) #17 TAP1 (ENSSVLG00005006618) #18 PSMB9 (ENSSVLG00005006563) #19 HLA-DMB (ENSSVLG00005006515) #20 HLA-DMA (ENSSVLG00005006465) #21 BRD2 (ENSSVLG00005006374) #22 HLA-DOA (ENSSVLG00005006335) #23 HLA-DPA1 (ENSSVLG00005006304) #24 HLA-DPB1 (ENSSVLG00005006269) COL11A2 (ENSSVLG00005005202) #25 RXRB (ENSSVLG00005004952) #26 SLC39A7 (ENSSVLG00005004925) #27 HSD17B8 (ENSSVLG00005004902) #28 RING1 (ENSSVLG00005004804) #29 ENSSVLG00005004778 VPS52 (ENSSVLG00005004757) #31 RPS18 (ENSSVLG00005004721) #32 B3GALT4 (ENSSVLG00005004704) #33 WDR46 (ENSSVLG00005004694) #34 ENSSVLG00005004670 #35 RGL2 (ENSSVLG00005004647) #36 Marmotini ANCESTRAL SPECIES 18 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.k.b ##12 ENSGT00940000154993.k.a ##12 ENSGT00940000161821.k #13 ENSGT00940000154723.b #14 ENSGT00940000161821.l.a #13 ENSGT00940000162353.i #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00940000162353.i #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Arctic ground squirrel MODERN SPECIES 25 HLA-DMB (ENSUPAG00010005014) #20 HLA-DMA (ENSUPAG00010005022) #21 BRD2 (ENSUPAG00010005033) #22 HLA-DOA (ENSUPAG00010005068) #23 HLA-DPB1 (ENSUPAG00010005123) HLA-DPA1 (ENSUPAG00010012558) #24 COL11A2 (ENSUPAG00010012591) #25 RXRB (ENSUPAG00010013376) #26 SLC39A7 (ENSUPAG00010013405) #27 HSD17B8 (ENSUPAG00010013412) #28 RING1 (ENSUPAG00010013424) #29 VPS52 (ENSUPAG00010013433) #31 ENSUPAG00010013506 ##32 B3GALT4 (ENSUPAG00010013513) #33 WDR46 (ENSUPAG00010013516) #34 PFDN6 (ENSUPAG00010013562) #35 RGL2 (ENSUPAG00010013583) #36 TAPBP (ENSUPAG00010013596) #37 Squirrel MODERN SPECIES 76 ENSSTOG00000028098 ##30 HLA-DOB (ENSSTOG00000003405) #15 ENSSTOG00000030715 TAP2 (ENSSTOG00000003413) #16 PSMB8 (ENSSTOG00000019724) #17 TAP1 (ENSSTOG00000003451) #18 PSMB9 (ENSSTOG00000003475) #19 HLA-DMB (ENSSTOG00000019821) #20 HLA-DMA (ENSSTOG00000009246) #21 BRD2 (ENSSTOG00000010807) #22 HLA-DOA (ENSSTOG00000010820) #23 HLA-DPA1 (ENSSTOG00000003558) #24 HLA-DPB1 (ENSSTOG00000003567) COL11A2 (ENSSTOG00000003578) #25 RXRB (ENSSTOG00000027099) #26 SLC39A7 (ENSSTOG00000014304) #27 HSD17B8 (ENSSTOG00000020853) #28 RING1 (ENSSTOG00000026166) #29 VPS52 (ENSSTOG00000002397) #31 ENSSTOG00000002417 ##32 B3GALT4 (ENSSTOG00000024877) #33 WDR46 (ENSSTOG00000002433) #34 PFDN6 (ENSSTOG00000027428) #35 RGL2 (ENSSTOG00000024728) #36 TAPBP (ENSSTOG00000025004) #37 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 24 ENSMMMG00000023121 RAB8A (ENSMMMG00000023118) TPM4 (ENSMMMG00000022621) ENSMMMG00000022612 ENSMMMG00000022610 ENSMMMG00000022564 ENSMMMG00000022557 CYP4F2 (ENSMMMG00000022533) CYP4F8 (ENSMMMG00000022511) CYP4F22 (ENSMMMG00000022504) PGLYRP2 (ENSMMMG00000022496) RASAL3 (ENSMMMG00000022474) ENSMMMG00000022459 AKAP8L (ENSMMMG00000022438) AKAP8 (ENSMMMG00000022416) ENSMMMG00000022411 #22 ENSMMMG00000022407 EPHX3 (ENSMMMG00000022401) NOTCH3 (ENSMMMG00000022356) ENSMMMG00000022351 ILVBL (ENSMMMG00000022300) SYDE1 (ENSMMMG00000022294) OR1I1 (ENSMMMG00000022293) CASP14 (ENSMMMG00000022289) CCDC105 (ENSMMMG00000022286) SLC1A6 (ENSMMMG00000022279) ENSMMMG00000022278 ENSMMMG00000022277 ENSMMMG00000022259 ENSMMMG00000022258 ENSMMMG00000022253 Alpin marmot MODERN SPECIES 20 ENSMMMG00000018777 ##12 ENSMMMG00000018780 ##12 ENSMMMG00000018785 #13 ENSMMMG00000018797 ENSMMMG00000018808 #14 ENSMMMG00000020395 ##30 ENSMMMG00000024056 #14 ENSMMMG00000024215 ##30 HLA-DOB (ENSMMMG00000024217) #15 TAP2 (ENSMMMG00000024218) #16 PSMB8 (ENSMMMG00000024220) #17 TAP1 (ENSMMMG00000024221) #18 PSMB9 (ENSMMMG00000024222) #19 HLA-DMB (ENSMMMG00000024223) #20 HLA-DMA (ENSMMMG00000024224) #21 BRD2 (ENSMMMG00000024225) #22 HLA-DOA (ENSMMMG00000024226) #23 HLA-DPA1 (ENSMMMG00000024227) #24 HLA-DPB1 (ENSMMMG00000024228) COL11A2 (ENSMMMG00000024229) #25 RXRB (ENSMMMG00000024230) #26 SLC39A7 (ENSMMMG00000024231) #27 HSD17B8 (ENSMMMG00000024232) #28 RING1 (ENSMMMG00000024233) #29 VPS52 (ENSMMMG00000024234) #31 ENSMMMG00000024235 ##32 B3GALT4 (ENSMMMG00000024236) #33 WDR46 (ENSMMMG00000024237) #34 PFDN6 (ENSMMMG00000024238) #35 RGL2 (ENSMMMG00000024239) #36 TAPBP (ENSMMMG00000024240) #37 Lagomorpha ANCESTRAL SPECIES 2 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154723.b #14 ENSGT00940000154993 #12 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Rabbit MODERN SPECIES 3 ENSOCUG00000021762 ENSOCUG00000006769 #9 ENSOCUG00000025822 #8 HLA-DRA (ENSOCUG00000009103) #10 ENSOCUG00000029731 #12 ENSOCUG00000030453 #11 HLA-DQB1 (ENSOCUG00000002485) #14 ENSOCUG00000002480 #13 HLA-DOB (ENSOCUG00000029437) #15 TAP2 (ENSOCUG00000002489) #16 PSMB8 (ENSOCUG00000002131) #17 TAP1 (ENSOCUG00000002135) #18 ENSOCUG00000002139 #19 HLA-DMB (ENSOCUG00000026567) #20 HLA-DMA (ENSOCUG00000022573) #21 BRD2 (ENSOCUG00000003097) #22 ENSOCUG00000003319 #23 HLA-DPB1 (ENSOCUG00000008721) COL11A2 (ENSOCUG00000016497) #25 RXRB (ENSOCUG00000011590) #26 SLC39A7 (ENSOCUG00000011598) #27 HSD17B8 (ENSOCUG00000020995) #28 VPS52 (ENSOCUG00000010533) #31 ENSOCUG00000010546 ##32 B3GALT4 (ENSOCUG00000010550) #33 ENSOCUG00000010554 #34 PFDN6 (ENSOCUG00000010559) #35 RGL2 (ENSOCUG00000026930) #36 TAPBP (ENSOCUG00000010563) #37 DAXX (ENSOCUG00000010574) SMIM40 (ENSOCUG00000037016) Pika MODERN SPECIES 3165 ENSOPRG00000007415 #20 HLA-DMA (ENSOPRG00000007424) #21 BRD2 (ENSOPRG00000007431) #22 HLA-DOA (ENSOPRG00000007456) #23 ENSOPRG00000007464 #24 Tree shrew MODERN SPECIES 5170 HLA-DMB (ENSTBEG00000016414) #20 BRD2 (ENSTBEG00000016659) #22 Primates ANCESTRAL SPECIES 5 ENSGT00530000064839 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000163287 ENSGT00530000064839 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Tarsier DUPLICATION Tarsier MODERN SPECIES 1195 BRD2 (ENSTSYG00000004390) #22 HLA-DOA (ENSTSYG00000005170) #23 HLA-DPA1 (ENSTSYG00000013384) #24 HLA-DPB1 (ENSTSYG00000009782) COL11A2 (ENSTSYG00000027190) #25 RXRB (ENSTSYG00000033111) #26 SLC39A7 (ENSTSYG00000026087) #27 HSD17B8 (ENSTSYG00000029416) #28 RING1 (ENSTSYG00000036469) #29 VPS52 (ENSTSYG00000012493) #31 RPS18 (ENSTSYG00000012508) #32 WDR46 (ENSTSYG00000028390) #34 ENSTSYG00000037267 #35 ENSTSYG00000006290 TAPBP (ENSTSYG00000036113) #37 DAXX (ENSTSYG00000029920) Tarsier MODERN SPECIES 1411 CRHR2 (ENSTSYG00000001674) GARS (ENSTSYG00000008538) ENSTSYG00000025595 #22 GGCT (ENSTSYG00000001156) NOD1 (ENSTSYG00000001155) Simiiformes ANCESTRAL SPECIES 5 ENSGT00530000064839 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES 2 ENSGT00940000154723.b.k #14 ENSGT00940000154993.n #12 ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #14 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.b #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cebidae ANCESTRAL SPECIES 5 ENSGT00940000154993.n.a #12 ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #14 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.b #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Cebidae_a ANCESTRAL SPECIES 25 ENSGT00940000154993.n.a.b #12 ENSGT00940000162892.a.a.c ENSGT00940000154723.b.l.a.b #14 ENSGT00940000162892.a.a.d ENSGT00940000154723.b.l.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.lc #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.b #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Capuchin MODERN SPECIES 24 HLA-DRA (ENSCCAG00000027271) #10 ENSCCAG00000033580 #12 ENSCCAG00000024284 #12 HLA-DRB1 (ENSCCAG00000025004) #12 HLA-DQA2 (ENSCCAG00000023549) ENSCCAG00000025088 #14 ENSCCAG00000023824 ENSCCAG00000028168 #14 HLA-DOB (ENSCCAG00000034021) #15 TAP2 (ENSCCAG00000035497) #16 PSMB8 (ENSCCAG00000026335) #17 TAP1 (ENSCCAG00000024218) #18 PSMB9 (ENSCCAG00000036808) #19 HLA-DMB (ENSCCAG00000030904) #20 HLA-DMA (ENSCCAG00000031122) #21 ENSCCAG00000016930 #22 HLA-DOA (ENSCCAG00000024211) #23 HLA-DPA1 (ENSCCAG00000035048) #24 HLA-DPB1 (ENSCCAG00000036491) COL11A2 (ENSCCAG00000021086) #25 RXRB (ENSCCAG00000015878) #26 SLC39A7 (ENSCCAG00000021481) #27 HSD17B8 (ENSCCAG00000034063) #28 RING1 (ENSCCAG00000020672) #29 VPS52 (ENSCCAG00000029806) #31 RPS18 (ENSCCAG00000023639) #32 WDR46 (ENSCCAG00000029352) #34 PFDN6 (ENSCCAG00000027108) #35 RGL2 (ENSCCAG00000036457) #36 TAPBP (ENSCCAG00000030579) #37 ZBTB22 (ENSCCAG00000019414) Bolivian squirrel monkey MODERN SPECIES 49 DEFB110 (ENSSBOG00000019583) DEFB112 (ENSSBOG00000031354) TFAP2D (ENSSBOG00000033191) TFAP2B (ENSSBOG00000021734) ENSSBOG00000033280 PKHD1 (ENSSBOG00000026830) IL17A (ENSSBOG00000031117) IL17F (ENSSBOG00000022387) MCM3 (ENSSBOG00000019946) PAQR8 (ENSSBOG00000008561) EFHC1 (ENSSBOG00000023512) TRAM2 (ENSSBOG00000033153) HLA-DMB (ENSSBOG00000028499) #20 HLA-DMA (ENSSBOG00000020585) #21 ENSSBOG00000034712 ENSSBOG00000033070 #22 HLA-DOA (ENSSBOG00000022957) #23 HLA-DPA1 (ENSSBOG00000026139) #24 HLA-DPB1 (ENSSBOG00000023374) COL11A2 (ENSSBOG00000030814) #25 RXRB (ENSSBOG00000028234) #26 SLC39A7 (ENSSBOG00000027575) #27 HSD17B8 (ENSSBOG00000033905) #28 ENSSBOG00000021715 #29 VPS52 (ENSSBOG00000034931) #31 ENSSBOG00000034369 ##32 WDR46 (ENSSBOG00000032568) #34 PFDN6 (ENSSBOG00000034801) #35 RGL2 (ENSSBOG00000031644) #36 TAPBP (ENSSBOG00000031122) #37 ZBTB22 (ENSSBOG00000018285) Marmoset MODERN SPECIES 16 ENSCJAG00000072632 ENSCJAG00000042232 ENSCJAG00000044447 ENSCJAG00000046350 ENSCJAG00000082318 ENSCJAG00000073641 ENSCJAG00000043141 ENSCJAG00000072040 ENSCJAG00000021548 #14 ENSCJAG00000045515 HLA-DOB (ENSCJAG00000035217) #15 TAP2 (ENSCJAG00000021550) #16 TAP1 (ENSCJAG00000021552) #18 PSMB9 (ENSCJAG00000021553) #19 HLA-DMA (ENSCJAG00000021558) #21 ENSCJAG00000021566 #22 HLA-DOA (ENSCJAG00000021571) #23 HLA-DPA1 (ENSCJAG00000057301) #24 HLA-DPB1 (ENSCJAG00000021575) COL11A2 (ENSCJAG00000021577) #25 RXRB (ENSCJAG00000021619) #26 SLC39A7 (ENSCJAG00000021622) #27 ENSCJAG00000021632 #28 RING1 (ENSCJAG00000081691) #29 VPS52 (ENSCJAG00000021644) #31 ENSCJAG00000021650 #32 B3GALT4 (ENSCJAG00000043225) #33 WDR46 (ENSCJAG00000021659) #34 PFDN6 (ENSCJAG00000021665) #35 RGL2 (ENSCJAG00000021668) #36 TAPBP (ENSCJAG00000021675) #37 Mas night monkey MODERN SPECIES 1006 ENSANAG00000025439 ENSANAG00000023444 #14 HLA-DQA2 (ENSANAG00000023973) HLA-DQB2 (ENSANAG00000025105) #14 TAP2 (ENSANAG00000023266) #16 PSMB8 (ENSANAG00000023214) #17 TAP1 (ENSANAG00000025374) #18 PSMB9 (ENSANAG00000018195) #19 ENSANAG00000029686 HLA-DMB (ENSANAG00000031322) #20 HLA-DMA (ENSANAG00000024515) #21 ENSANAG00000022510 BRD2 (ENSANAG00000025054) #22 HLA-DOA (ENSANAG00000023738) #23 ENSANAG00000020251 ENSANAG00000021916 HLA-DPA1 (ENSANAG00000025586) #24 Platyrrhini ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.mc #22 Cebidae ANCESTRAL SPECIES 1 ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338 ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e ENSGT00940000156746 ENSGT00940000155661 Cebidae_a ANCESTRAL SPECIES ENSGT00510000049371.a ENSGT00390000007658.h ENSGT00390000015471 ENSGT00390000008338.i ENSGT00390000007464 ENSGT00390000008549 ENSGT00490000043472 ENSGT00940000159474 ENSGT00940000154674.i.b ENSGT00940000156450 ENSGT00940000156945 ENSGT00530000063460.A.a ENSGT00940000160126 ENSGT00940000160247 ENSGT00940000158038 ENSGT00940000153385.b.a.b.mc #22 ENSGT00390000007027 ENSGT00390000018245.d ENSGT00940000157721 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417 ENSGT00390000008678 ENSGT00950000182916.a.b.a.a.a.a ENSGT00910000147158 ENSGT00940000157668.e ENSGT00940000155136 ENSGT00940000158468 ENSGT00910000144243.e.a ENSGT00940000156746 ENSGT00940000155661 Capuchin MODERN SPECIES 163 TTC22 (ENSCCAG00000033419) LEXM (ENSCCAG00000027952) ENSCCAG00000028192 TMEM61 (ENSCCAG00000024822) BSND (ENSCCAG00000021350) ENSCCAG00000030255 PCSK9 (ENSCCAG00000036131) USP24 (ENSCCAG00000027655) ENSCCAG00000022168 PLPP3 (ENSCCAG00000001330) PRKAA2 (ENSCCAG00000035336) FYB2 (ENSCCAG00000027589) C8A (ENSCCAG00000024662) C8B (ENSCCAG00000031384) DAB1 (ENSCCAG00000024787) ENSCCAG00000022246 #22 OMA1 (ENSCCAG00000022811) TACSTD2 (ENSCCAG00000032228) MYSM1 (ENSCCAG00000029058) FGGY (ENSCCAG00000033989) ENSCCAG00000025106 HOOK1 (ENSCCAG00000006471) CYP2J2 (ENSCCAG00000027549) C1orf87 (ENSCCAG00000027605) Bolivian squirrel monkey MODERN SPECIES 45 TTC4 (ENSSBOG00000032224) TTC22 (ENSSBOG00000026280) LEXM (ENSSBOG00000006931) DHCR24 (ENSSBOG00000025550) TMEM61 (ENSSBOG00000013875) BSND (ENSSBOG00000035713) PCSK9 (ENSSBOG00000029957) USP24 (ENSSBOG00000022906) ENSSBOG00000031773 PLPP3 (ENSSBOG00000021254) PRKAA2 (ENSSBOG00000036202) FYB2 (ENSSBOG00000024468) C8A (ENSSBOG00000023783) C8B (ENSSBOG00000034357) DAB1 (ENSSBOG00000030885) ENSSBOG00000024749 #22 OMA1 (ENSSBOG00000023199) TACSTD2 (ENSSBOG00000024148) MYSM1 (ENSSBOG00000031552) ENSSBOG00000029734 FGGY (ENSSBOG00000031213) HOOK1 (ENSSBOG00000032069) CYP2J2 (ENSSBOG00000033096) C1orf87 (ENSSBOG00000033425) ENSSBOG00000024205 NFIA (ENSSBOG00000030190) ENSSBOG00000028260 ENSSBOG00000028010 PATJ (ENSSBOG00000022857) KANK4 (ENSSBOG00000020644) USP1 (ENSSBOG00000020735) Marmoset MODERN SPECIES 19 TTC4 (ENSCJAG00000015611) TTC22 (ENSCJAG00000015639) LEXM (ENSCJAG00000015646) DHCR24 (ENSCJAG00000015653) TMEM61 (ENSCJAG00000015669) BSND (ENSCJAG00000042101) PCSK9 (ENSCJAG00000015682) USP24 (ENSCJAG00000015739) PLPP3 (ENSCJAG00000015880) ENSCJAG00000054878 PRKAA2 (ENSCJAG00000015889) FYB2 (ENSCJAG00000015907) C8A (ENSCJAG00000015926) C8B (ENSCJAG00000015932) DAB1 (ENSCJAG00000015941) ENSCJAG00000022997 #22 ENSCJAG00000070548 ENSCJAG00000084546 OMA1 (ENSCJAG00000016000) ENSCJAG00000074487 TACSTD2 (ENSCJAG00000016017) MYSM1 (ENSCJAG00000016020) FGGY (ENSCJAG00000016043) ENSCJAG00000022957 HOOK1 (ENSCJAG00000016077) CYP2J2 (ENSCJAG00000016130) C1orf87 (ENSCJAG00000016137) ENSCJAG00000053189 ENSCJAG00000022998 NFIA (ENSCJAG00000016165) ENSCJAG00000078946 Catarrhini ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b #12 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b #12 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Hominidae ANCESTRAL SPECIES 5 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.a #12 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a #32 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000154993.m.a.b #12 ENSGT00940000154993.m.a.a #12 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a #32 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Gorilla MODERN SPECIES 19 BTNL2 (ENSGGOG00000009855) #9 HLA-DRA (ENSGGOG00000009861) #10 HLA-DRB5 (ENSGGOG00000037929) #12 ENSGGOG00000000700 #12 HLA-DQA1 (ENSGGOG00000013538) HLA-DQB1 (ENSGGOG00000004252) #14 ENSGGOG00000037744 HLA-DQB2 (ENSGGOG00000014413) #14 HLA-DOB (ENSGGOG00000043194) #15 TAP2 (ENSGGOG00000010941) #16 PSMB8 (ENSGGOG00000010953) #17 TAP1 (ENSGGOG00000010958) #18 PSMB9 (ENSGGOG00000010965) #19 HLA-DMB (ENSGGOG00000022404) #20 ENSGGOG00000005835 #21 BRD2 (ENSGGOG00000043461) #22 ENSGGOG00000005838 HLA-DOA (ENSGGOG00000010653) #23 HLA-DPA1 (ENSGGOG00000013625) #24 HLA-DPB1 (ENSGGOG00000013630) COL11A2 (ENSGGOG00000009799) #25 RXRB (ENSGGOG00000009823) #26 SLC39A7 (ENSGGOG00000009830) #27 HSD17B8 (ENSGGOG00000009838) #28 RING1 (ENSGGOG00000009842) #29 VPS52 (ENSGGOG00000006565) #31 RPS18 (ENSGGOG00000006571) #32 WDR46 (ENSGGOG00000006578) #34 PFDN6 (ENSGGOG00000006583) #35 RGL2 (ENSGGOG00000006585) #36 TAPBP (ENSGGOG00000006593) #37 Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000154993.m.a.b #12 ENSGT00940000154993.m.a.a #12 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a #32 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Pan ANCESTRAL SPECIES 5 ENSGT00940000154993.m.b #12 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a ENSGT00940000154723.b.m.a #14 ENSGT00940000162892.a.b ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.a #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Chimpanzee MODERN SPECIES 19 PATR-DRA (ENSPTRG00000018016) #10 PATR-DRB5 (ENSPTRG00000023735) #12 ENSPTRG00000051243 #12 PATR-DQB1 (ENSPTRG00000018001) #12 HLA-DQA1 (ENSPTRG00000018017) HLA-DQB1 (ENSPTRG00000018018) #14 HLA-DQA2 (ENSPTRG00000034186) HLA-DQB2 (ENSPTRG00000023404) #14 PATR-DOB (ENSPTRG00000018020) #15 TAP2 (ENSPTRG00000018021) #16 PSMB8 (ENSPTRG00000018022) #17 TAP1 (ENSPTRG00000018023) #18 PSMB9 (ENSPTRG00000018024) #19 PATR-DMB (ENSPTRG00000018025) #20 ENSPTRG00000018026 #21 BRD2 (ENSPTRG00000042676) #22 ENSPTRG00000018027 HLA-DOA (ENSPTRG00000018028) #23 HLA-DPA1 (ENSPTRG00000018029) #24 HLA-DPB1 (ENSPTRG00000018030) COL11A2 (ENSPTRG00000018033) #25 RXRB (ENSPTRG00000018034) #26 SLC39A7 (ENSPTRG00000018035) #27 HSD17B8 (ENSPTRG00000018036) #28 RING1 (ENSPTRG00000018037) #29 VPS52 (ENSPTRG00000018038) #31 RPS18 (ENSPTRG00000018039) #32 WDR46 (ENSPTRG00000018040) #34 PFDN6 (ENSPTRG00000018041) #35 RGL2 (ENSPTRG00000018042) #36 TAPBP (ENSPTRG00000018043) #37 Bonobo MODERN SPECIES 19 ENSPPAG00000036652 #12 ENSPPAG00000039594 #12 ENSPPAG00000019881 HLA-DQB1 (ENSPPAG00000041275) #14 HLA-DQA2 (ENSPPAG00000038014) HLA-DQB2 (ENSPPAG00000041341) #14 HLA-DOB (ENSPPAG00000027428) #15 TAP2 (ENSPPAG00000033938) #16 PSMB8 (ENSPPAG00000042377) #17 TAP1 (ENSPPAG00000029436) #18 PSMB9 (ENSPPAG00000038623) #19 ENSPPAG00000033020 HLA-DMB (ENSPPAG00000037856) #20 HLA-DMA (ENSPPAG00000041639) #21 ENSPPAG00000027710 BRD2 (ENSPPAG00000016843) #22 HLA-DOA (ENSPPAG00000036361) #23 HLA-DPA1 (ENSPPAG00000031863) #24 HLA-DPB1 (ENSPPAG00000041449) COL11A2 (ENSPPAG00000013099) #25 RXRB (ENSPPAG00000038590) #26 SLC39A7 (ENSPPAG00000028225) #27 HSD17B8 (ENSPPAG00000032286) #28 RING1 (ENSPPAG00000001290) #29 VPS52 (ENSPPAG00000039628) #31 RPS18 (ENSPPAG00000037432) #32 B3GALT4 (ENSPPAG00000040442) #33 WDR46 (ENSPPAG00000029606) #34 PFDN6 (ENSPPAG00000026096) #35 RGL2 (ENSPPAG00000030717) #36 TAPBP (ENSPPAG00000024524) #37 Human MODERN SPECIES 18 HLA-DRB5 (ENSG00000198502) #12 HLA-DRB1 (ENSG00000196126) #12 HLA-DQA1 (ENSG00000196735) HLA-DQB1 (ENSG00000179344) #14 HLA-DQA2 (ENSG00000237541) HLA-DQB2 (ENSG00000232629) #14 HLA-DOB (ENSG00000241106) #15 ENSG00000250264 TAP2 (ENSG00000204267) #16 PSMB8 (ENSG00000204264) #17 PSMB9 (ENSG00000240065) #19 TAP1 (ENSG00000168394) #18 HLA-DMB (ENSG00000242574) #20 ENSG00000248993 HLA-DMA (ENSG00000204257) #21 BRD2 (ENSG00000204256) #22 HLA-DOA (ENSG00000204252) #23 HLA-DPA1 (ENSG00000231389) #24 HLA-DPB1 (ENSG00000223865) COL11A2 (ENSG00000204248) #25 RXRB (ENSG00000204231) #26 SLC39A7 (ENSG00000112473) #27 HSD17B8 (ENSG00000204228) #28 RING1 (ENSG00000204227) #29 VPS52 (ENSG00000223501) #31 RPS18 (ENSG00000231500) #32 B3GALT4 (ENSG00000235863) #33 WDR46 (ENSG00000227057) #34 PFDN6 (ENSG00000204220) #35 RGL2 (ENSG00000237441) #36 TAPBP (ENSG00000231925) #37 Orangutan MODERN SPECIES 19 TSBP1 (ENSPPYG00000016489) BTNL2 (ENSPPYG00000017215) #9 HLA-DRA (ENSPPYG00000017234) #10 HLA-DRB1 (ENSPPYG00000016490) #12 ENSPPYG00000017216 #12 HLA-DQA2 (ENSPPYG00000017219) HLA-DQB2 (ENSPPYG00000017220) #14 HLA-DOB (ENSPPYG00000017221) #15 TAP2 (ENSPPYG00000017222) #16 PSMB8 (ENSPPYG00000017223) #17 TAP1 (ENSPPYG00000017224) #18 PSMB9 (ENSPPYG00000017225) #19 HLA-DMB (ENSPPYG00000017226) #20 ENSPPYG00000017227 #21 ENSPPYG00000031820 BRD2 (ENSPPYG00000017228) #22 HLA-DOA (ENSPPYG00000016495) #23 ENSPPYG00000029571 HLA-DPA1 (ENSPPYG00000017229) #24 COL11A2 (ENSPPYG00000017238) #25 RXRB (ENSPPYG00000017239) #26 SLC39A7 (ENSPPYG00000017240) #27 HSD17B8 (ENSPPYG00000017241) #28 RING1 (ENSPPYG00000017242) #29 VPS52 (ENSPPYG00000017243) #31 ENSPPYG00000025953 ##32 B3GALT4 (ENSPPYG00000017244) #33 WDR46 (ENSPPYG00000017245) #34 PFDN6 (ENSPPYG00000038269) #35 RGL2 (ENSPPYG00000017247) #36 TAPBP (ENSPPYG00000017248) #37 Gibbon MODERN SPECIES 10 HLA-DRA (ENSNLEG00000006686) #10 ENSNLEG00000032832 #12 HLA-DQA1 (ENSNLEG00000032515) HLA-DQB1 (ENSNLEG00000006693) #14 HLA-DQA2 (ENSNLEG00000027015) HLA-DQB2 (ENSNLEG00000006713) #14 HLA-DOB (ENSNLEG00000027543) #15 TAP2 (ENSNLEG00000006714) #16 PSMB8 (ENSNLEG00000006733) #17 TAP1 (ENSNLEG00000006738) #18 PSMB9 (ENSNLEG00000006757) #19 ENSNLEG00000032895 HLA-DMB (ENSNLEG00000006770) #20 HLA-DMA (ENSNLEG00000006775) #21 ENSNLEG00000032110 BRD2 (ENSNLEG00000006782) #22 ENSNLEG00000031675 #23 HLA-DPA1 (ENSNLEG00000034417) #24 HLA-DPB1 (ENSNLEG00000006801) ENSNLEG00000030023 #25 RXRB (ENSNLEG00000006809) #26 SLC39A7 (ENSNLEG00000006815) #27 HSD17B8 (ENSNLEG00000006824) #28 RING1 (ENSNLEG00000006830) #29 VPS52 (ENSNLEG00000006832) #31 RPS18 (ENSNLEG00000006840) #32 B3GALT4 (ENSNLEG00000006841) #33 ENSNLEG00000006842 #34 PFDN6 (ENSNLEG00000034338) #35 RGL2 (ENSNLEG00000006847) #36 ENSNLEG00000006852 #37 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000154993.m.b #12 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 177 ENSGT00940000154993.m.a.a #12 ENSGT00940000154993.m.b #12 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000154723.b.n #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.nc #22 ENSGT00940000162112 #23 Golden snub-nosed monkey MODERN SPECIES 1416 TAP2 (ENSRROG00000033497) #16 PSMB8 (ENSRROG00000019326) #17 TAP1 (ENSRROG00000021353) #18 PSMB9 (ENSRROG00000005028) #19 ENSRROG00000012955 HLA-DMB (ENSRROG00000039771) #20 HLA-DMA (ENSRROG00000037828) #21 ENSRROG00000034857 ENSRROG00000012557 #22 HLA-DOA (ENSRROG00000000054) #23 Black snub-nosed monkey MODERN SPECIES 1396 HLA-DQA1 (ENSRBIG00000031838) ENSRBIG00000031872 #14 HLA-DOB (ENSRBIG00000039119) #15 TAP2 (ENSRBIG00000042752) #16 PSMB8 (ENSRBIG00000032621) #17 TAP1 (ENSRBIG00000038729) #18 PSMB9 (ENSRBIG00000042419) #19 ENSRBIG00000031206 HLA-DMB (ENSRBIG00000031730) #20 HLA-DMA (ENSRBIG00000027897) #21 ENSRBIG00000033102 ENSRBIG00000044329 #22 HLA-DOA (ENSRBIG00000041291) #23 Rhinopithecus ANCESTRAL SPECIES 229 ENSGT01010000222336.a.a.a.ob.a.a.o ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b ENSGT00390000000083.a ENSGT00390000013207 ENSGT00940000153385.b.a.b.oc #22 ENSGT00940000156005 ENSGT00940000156891 ENSGT00940000158751 ENSGT00730000111019 ENSGT00390000016097 ENSGT00390000009546.a ENSGT00910000147388 ENSGT00860000135749 ENSGT00940000159153 ENSGT00940000157159 ENSGT00940000155944 ENSGT00940000153222.a.b.b.b.b.k.b ENSGT00940000157417 ENSGT00940000158243 ENSGT00940000161472 Black snub-nosed monkey MODERN SPECIES 713 ENSRBIG00000023969 ENSRBIG00000031681 RIOX1 (ENSRBIG00000017859) HEATR4 (ENSRBIG00000041847) ENSRBIG00000015372 #22 NUMB (ENSRBIG00000043156) PAPLN (ENSRBIG00000033248) PSEN1 (ENSRBIG00000019293) RBM25 (ENSRBIG00000039904) ZFYVE1 (ENSRBIG00000036107) DCAF4 (ENSRBIG00000041818) ENSRBIG00000040543 ENSRBIG00000038609 DPF3 (ENSRBIG00000021314) RGS6 (ENSRBIG00000038422) SIPA1L1 (ENSRBIG00000013622) ENSRBIG00000033864 PCNX1 (ENSRBIG00000027567) MAP3K9 (ENSRBIG00000031048) TTC9 (ENSRBIG00000041695) Golden snub-nosed monkey MODERN SPECIES 797 ENSRROG00000036776 ENSRROG00000039724 RIOX1 (ENSRROG00000010218) HEATR4 (ENSRROG00000040469) ENSRROG00000035725 #22 NUMB (ENSRROG00000039499) PAPLN (ENSRROG00000032324) PSEN1 (ENSRROG00000023023) RBM25 (ENSRROG00000035556) ENSRROG00000028901 ZFYVE1 (ENSRROG00000037742) DCAF4 (ENSRROG00000035960) ENSRROG00000044529 ENSRROG00000045287 DPF3 (ENSRROG00000039384) RGS6 (ENSRROG00000040751) Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Macaca ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.pc #22 Macaca_a ANCESTRAL SPECIES 1 ENSGT00940000157246 ENSGT01030000234542.b.b.a.a.a.b.u ENSGT01060000248581.A.b.l ENSGT00940000164421.c ENSGT01100000263561.C.d.a.a ENSGT01100000263561.C.d.a.b.a ENSGT00940000164421.d ENSGT01060000248581.A.b.k ENSGT00940000154646.C.n.a ENSGT00940000161507 ENSGT00940000158718 ENSGT00940000161423 ENSGT00940000159979 ENSGT00530000063777.a.a.a ENSGT00530000063777.a.a.b ENSGT00940000153385.b.a.b.pc #22 ENSGT00940000162790.a ENSGT00940000162086 ENSGT00940000160234 ENSGT00940000158035 ENSGT01030000234635.a.a.a.b ENSGT00940000162852.a ENSGT00940000162117 ENSGT00390000003207.a ENSGT00940000159972 ENSGT00940000162084 ENSGT00940000153523.j ENSGT00950000183216.d ENSGT00940000153523.i.b ENSGT00940000162597 ENSGT00940000163161 Crab-eating macaque MODERN SPECIES 10 RAB8A (ENSMFAG00000035674) ENSMFAG00000042469 ENSMFAG00000018623 CYP4F11 (ENSMFAG00000039188) OR10H5 (ENSMFAG00000054868) ENSMFAG00000054713 CYP4F57 (ENSMFAG00000045394) ENSMFAG00000052137 ENSMFAG00000053879 CYP4F22 (ENSMFAG00000043198) PGLYRP2 (ENSMFAG00000024296) WIZ (ENSMFAG00000039361) ENSMFAG00000051652 AKAP8L (ENSMFAG00000045237) AKAP8 (ENSMFAG00000042432) ENSMFAG00000030806 #22 EPHX3 (ENSMFAG00000001020) ILVBL (ENSMFAG00000030909) SYDE1 (ENSMFAG00000037133) OR1I1 (ENSMFAG00000049100) CASP14 (ENSMFAG00000045231) CCDC105 (ENSMFAG00000039156) SLC1A6 (ENSMFAG00000003076) OR7C2 (ENSMFAG00000034243) ENSMFAG00000057232 ENSMFAG00000047405 ENSMFAG00000058125 ZNF333 (ENSMFAG00000035483) ADGRE2 (ENSMFAG00000038126) CLEC17A (ENSMFAG00000043558) NDUFB7 (ENSMFAG00000043529) Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a #22 Cercopithecinae_d DUPLICATION Cercopithecinae_d ANCESTRAL SPECIES 68 ENSGT00390000004799 ENSGT00390000018900 ENSGT00940000153165.a.b.a ENSGT00940000164696 ENSGT00940000164691.a.b ENSGT00940000164793 ENSGT00940000154251.A.b.a.b.a ENSGT00950000183206.b.c.a.b.a.a ENSGT00940000161967 ENSGT00940000162415 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000158134.A ENSGT00940000162666 ENSGT00940000162246 ENSGT01090000259995.b.b.b ENSGT00940000153385.b.a.b.qc.a.a #22 ENSGT01090000259995.b.b.a.b.o ENSGT01090000259995.b.b.a.a.b.o.a.b ENSGT01090000259995.b.b.a.a.b.p.a Drill MODERN SPECIES 279 TRIM58 (ENSMLEG00000030196) OR2AJ1 (ENSMLEG00000005755) ENSMLEG00000031562 #22 ENSMLEG00000011380 ENSMLEG00000037918 ENSMLEG00000027254 Sooty mangabey MODERN SPECIES 301 ENSCATG00000030246 ZNF124 (ENSCATG00000035310) ENSCATG00000038074 ENSCATG00000005868 ZNF496 (ENSCATG00000031929) NLRP3 (ENSCATG00000029371) OR2B11 (ENSCATG00000043410) GCSAML (ENSCATG00000030752) OR13G1 (ENSCATG00000043354) TRIM58 (ENSCATG00000038759) ENSCATG00000030481 ENSCATG00000039502 #22 ENSCATG00000034652 ENSCATG00000017262 ENSCATG00000015507 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000153385.b.a.b.qc.a.b #22 Sooty mangabey MODERN SPECIES 333 SMTNL1 (ENSCATG00000009203) TIMM10 (ENSCATG00000030369) SLC43A1 (ENSCATG00000036597) RTN4RL2 (ENSCATG00000029746) SLC43A3 (ENSCATG00000031268) PRG2 (ENSCATG00000039658) PRG3 (ENSCATG00000011827) P2RX3 (ENSCATG00000028693) SSRP1 (ENSCATG00000041377) TNKS1BP1 (ENSCATG00000037546) APLNR (ENSCATG00000019437) LRRC55 (ENSCATG00000010960) ENSCATG00000013388 OR9G4 (ENSCATG00000019474) ENSCATG00000019867 ENSCATG00000031014 #22 OR5M9 (ENSCATG00000020470) OR8J1 (ENSCATG00000014575) OR8K1 (ENSCATG00000018484) ENSCATG00000029525 ENSCATG00000018722 OR5I1 (ENSCATG00000016816) OR4S2 (ENSCATG00000018258) ENSCATG00000039191 OR4A8 (ENSCATG00000000891) Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000154993.m.a.a.a #12 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Vervet Monkey MODERN SPECIES 8 AGER (ENSCSAG00000009312) PBX2 (ENSCSAG00000009322) GPSM3 (ENSCSAG00000009326) NOTCH4 (ENSCSAG00000009351) HLA-DRA (ENSCSAG00000009368) #10 ENSCSAG00000009375 HLA-DRB1 (ENSCSAG00000009383) #12 HLA-DQA1 (ENSCSAG00000009389) HLA-DQB1 (ENSCSAG00000009394) #14 HLA-DOB (ENSCSAG00000009402) #15 PSMB8 (ENSCSAG00000009409) #17 TAP1 (ENSCSAG00000009417) #18 PSMB9 (ENSCSAG00000009427) #19 HLA-DMB (ENSCSAG00000009430) #20 HLA-DMA (ENSCSAG00000009436) #21 BRD2 (ENSCSAG00000009445) #22 HLA-DOA (ENSCSAG00000009452) #23 ENSCSAG00000009455 #24 ENSCSAG00000009461 COL11A2 (ENSCSAG00000009488) #25 RXRB (ENSCSAG00000009510) #26 SLC39A7 (ENSCSAG00000009519) #27 HSD17B8 (ENSCSAG00000009530) #28 RING1 (ENSCSAG00000009538) #29 VPS52 (ENSCSAG00000009546) #31 B3GALT4 (ENSCSAG00000019308) #33 WDR46 (ENSCSAG00000009552) #34 PFDN6 (ENSCSAG00000009556) #35 RGL2 (ENSCSAG00000009562) #36 TAPBP (ENSCSAG00000009568) #37 ZBTB22 (ENSCSAG00000019307) Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000154993.m.a.b #12 ENSGT00940000162892.a.a.a ENSGT00940000154723.b.m.b #14 ENSGT00940000154993.m.a.a.a #12 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00910000147736 Macaca ANCESTRAL SPECIES 9 ENSGT00530000064839 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.a.b.b #12 ENSGT00940000154993.m.b.a.b #12 ENSGT00940000154993.m.a.a.a #12 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00910000147736 Pig-tailed macaque MODERN SPECIES 528 ENSMNEG00000020869 #12 ENSMNEG00000018617 ENSMNEG00000044119 #12 HLA-DQA1 (ENSMNEG00000038603) HLA-DQB1 (ENSMNEG00000027969) #14 HLA-DOB (ENSMNEG00000043598) #15 TAP2 (ENSMNEG00000041413) #16 PSMB8 (ENSMNEG00000044942) #17 TAP1 (ENSMNEG00000041518) #18 PSMB9 (ENSMNEG00000038721) #19 ENSMNEG00000036723 ENSMNEG00000035658 HLA-DMB (ENSMNEG00000044507) #20 HLA-DMA (ENSMNEG00000032904) #21 ENSMNEG00000039758 BRD2 (ENSMNEG00000030743) #22 HLA-DOA (ENSMNEG00000008508) #23 HLA-DPA1 (ENSMNEG00000040889) #24 HLA-DPB1 (ENSMNEG00000029725) ENSMNEG00000010287 COL11A2 (ENSMNEG00000022236) #25 RXRB (ENSMNEG00000034252) #26 SLC39A7 (ENSMNEG00000034647) #27 HSD17B8 (ENSMNEG00000036244) #28 RING1 (ENSMNEG00000042339) #29 VPS52 (ENSMNEG00000038741) #31 ENSMNEG00000045500 #32 WDR46 (ENSMNEG00000034609) #34 PFDN6 (ENSMNEG00000030272) #35 RGL2 (ENSMNEG00000039053) #36 ENSMNEG00000013214 Macaca_a ANCESTRAL SPECIES 9 ENSGT00890000139566 ENSGT00940000160293 ENSGT00390000002471 ENSGT00940000163287 ENSGT00950000183123.h.b ENSGT00530000064839 ENSGT00940000160997 #10 ENSGT00940000154993.m.a.b #12 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.k #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160668 #28 ENSGT00940000160076 #27 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.m.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Crab-eating macaque MODERN SPECIES 14 ENSMFAG00000033054 ENSMFAG00000049929 ENSMFAG00000033140 HLA-DRA (ENSMFAG00000032157) #10 ENSMFAG00000058962 #12 HLA-DRB5 (ENSMFAG00000000676) #12 ENSMFAG00000054107 HLA-DQA1 (ENSMFAG00000002949) HLA-DOB (ENSMFAG00000003652) #15 TAP2 (ENSMFAG00000037139) #16 TAP1 (ENSMFAG00000041369) #18 PSMB9 (ENSMFAG00000038128) #19 HLA-DMB (ENSMFAG00000004018) #20 HLA-DMA (ENSMFAG00000042109) #21 ENSMFAG00000060572 BRD2 (ENSMFAG00000037520) #22 HLA-DOA (ENSMFAG00000058905) #23 RXRB (ENSMFAG00000003583) #26 HSD17B8 (ENSMFAG00000037332) #28 SLC39A7 (ENSMFAG00000038848) #27 RING1 (ENSMFAG00000002610) #29 COL11A2 (ENSMFAG00000017491) #25 RPS18 (ENSMFAG00000032199) #32 B3GALT4 (ENSMFAG00000041942) #33 WDR46 (ENSMFAG00000000475) #34 PFDN6 (ENSMFAG00000041216) #35 RGL2 (ENSMFAG00000039597) #36 TAPBP (ENSMFAG00000000942) #37 ZBTB22 (ENSMFAG00000011344) DAXX (ENSMFAG00000038728) ENSMFAG00000058856 Rhesus MODERN SPECIES 14 RNF5 (ENSMMUG00000018438) AGER (ENSMMUG00000018442) PBX2 (ENSMMUG00000018456) GPSM3 (ENSMMUG00000018459) NOTCH4 (ENSMMUG00000018461) ENSMMUG00000029402 TSBP1 (ENSMMUG00000018425) MAMU-DRA (ENSMMUG00000039082) #10 MAMU-DRB1 (ENSMMUG00000029799) #12 ENSMMUG00000054826 MAMU-DOB (ENSMMUG00000011293) #16 PSMB8 (ENSMMUG00000011301) #18 PSMB9 (ENSMMUG00000011304) #19 ENSMMUG00000063291 MAMU-DMB (ENSMMUG00000022626) #20 BRD2 (ENSMMUG00000023138) #22 MAMU-DOA (ENSMMUG00000015734) #23 ENSMMUG00000041095 ENSMMUG00000019371 #24 COL11A2 (ENSMMUG00000003850) #25 RXRB (ENSMMUG00000003858) #26 HSD17B8 (ENSMMUG00000003861) #28 SLC39A7 (ENSMMUG00000003859) #27 RING1 (ENSMMUG00000003863) #29 ENSMMUG00000003867 #32 VPS52 (ENSMMUG00000003864) #31 B3GALT4 (ENSMMUG00000064507) #33 WDR46 (ENSMMUG00000003869) #34 PFDN6 (ENSMMUG00000003871) #35 RGL2 (ENSMMUG00000003872) #36 TAPBP (ENSMMUG00000003875) #37 Cercopithecinae_b ANCESTRAL SPECIES 18 ENSGT00530000064866 ENSGT00940000153251.b.a ENSGT00390000015391 ENSGT00940000155046.t ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353.h #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n #24 ENSGT00940000162498.m #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.n #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Cercopithecinae_d ANCESTRAL SPECIES 197 ENSGT00940000162892.a.a.b ENSGT00940000154723.b.m.a #14 ENSGT00940000162353.h #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00390000004757.`b.a ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b.qc.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.n #24 ENSGT00940000162390 Drill MODERN SPECIES 1605 HLA-DOB (ENSMLEG00000044332) #15 TAP2 (ENSMLEG00000040111) #16 PSMB8 (ENSMLEG00000028732) #17 TAP1 (ENSMLEG00000042023) #18 PSMB9 (ENSMLEG00000009919) #19 ENSMLEG00000033307 HLA-DMB (ENSMLEG00000032921) #20 HLA-DMA (ENSMLEG00000039758) #21 ENSMLEG00000035779 ENSMLEG00000042296 #22 HLA-DOA (ENSMLEG00000037836) #23 ENSMLEG00000035946 #24 Sooty mangabey MODERN SPECIES 451 HLA-DQA1 (ENSCATG00000012156) HLA-DQB1 (ENSCATG00000030073) #14 ENSCATG00000036138 #15 TAP2 (ENSCATG00000038838) #16 PSMB8 (ENSCATG00000024878) #17 TAP1 (ENSCATG00000033980) #18 PSMB9 (ENSCATG00000041856) #19 ENSCATG00000037243 HLA-DMB (ENSCATG00000024024) #20 HLA-DMA (ENSCATG00000030669) #21 ENSCATG00000037729 ENSCATG00000034965 #22 HLA-DOA (ENSCATG00000035917) #23 ENSCATG00000024393 #24 HLA-DPB1 (ENSCATG00000038170) Olive baboon MODERN SPECIES 16 CDSN (ENSPANG00000047914) PSORS1C2 (ENSPANG00000024487) ENSPANG00000049186 CCHCR1 (ENSPANG00000017010) TCF19 (ENSPANG00000024035) ENSPANG00000007627 ENSPANG00000044498 HLA-DOB (ENSPANG00000016388) #15 TAP2 (ENSPANG00000015103) #16 PSMB8 (ENSPANG00000016588) #17 TAP1 (ENSPANG00000024178) #18 PSMB9 (ENSPANG00000033974) #19 HLA-DMB (ENSPANG00000019593) #20 HLA-DMA (ENSPANG00000026492) #21 ENSPANG00000035618 BRD2 (ENSPANG00000019626) #22 HLA-DOA (ENSPANG00000031879) #23 HLA-DPA1 (ENSPANG00000018967) #24 HLA-DPB1 (ENSPANG00000005764) COL11A2 (ENSPANG00000009194) #25 RXRB (ENSPANG00000018527) #26 SLC39A7 (ENSPANG00000023633) #27 HSD17B8 (ENSPANG00000023634) #28 RING1 (ENSPANG00000023635) #29 VPS52 (ENSPANG00000026491) #31 RPS18 (ENSPANG00000029306) #32 B3GALT4 (ENSPANG00000040674) #33 WDR46 (ENSPANG00000009193) #34 PFDN6 (ENSPANG00000025458) #35 RGL2 (ENSPANG00000023572) #36 TAPBP (ENSPANG00000022348) #37 Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00940000162450 #7 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000161821 #13 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Lemuriformes_a ANCESTRAL SPECIES 76 ENSGT00940000163287 ENSGT00940000162079 #8 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 872 HLA-DQB1 (ENSPCOG00000014494) #14 HLA-DOB (ENSPCOG00000022286) #15 TAP2 (ENSPCOG00000014799) #16 PSMB8 (ENSPCOG00000028091) #17 TAP1 (ENSPCOG00000019389) #18 PSMB9 (ENSPCOG00000017686) #19 HLA-DMB (ENSPCOG00000018934) #20 HLA-DMA (ENSPCOG00000022072) #21 ENSPCOG00000016191 ENSPCOG00000018456 #22 ENSPCOG00000018880 HLA-DOA (ENSPCOG00000014372) #23 HLA-DPA1 (ENSPCOG00000015236) #24 Coquerels sifaka MODERN SPECIES 611 CPZ (ENSPCOG00000018885) TRMT44 (ENSPCOG00000028809) ACOX3 (ENSPCOG00000015967) HTRA3 (ENSPCOG00000015549) NANP (ENSPCOG00000022703) ENSPCOG00000014381 NINL (ENSPCOG00000019338) GINS1 (ENSPCOG00000016034) ABHD12 (ENSPCOG00000022073) PYGB (ENSPCOG00000021348) ENTPD6 (ENSPCOG00000022862) VSX1 (ENSPCOG00000013919) ACSS1 (ENSPCOG00000018745) APMAP (ENSPCOG00000023592) CST7 (ENSPCOG00000019725) ENSPCOG00000023905 #22 SYNDIG1 (ENSPCOG00000003880) ENSPCOG00000021349 Greater bamboo lemur MODERN SPECIES 650 ENSPSMG00000007220 #8 ENSPSMG00000007226 #9 HLA-DRA (ENSPSMG00000007272) #10 ENSPSMG00000007912 #11 ENSPSMG00000008349 HLA-DQB1 (ENSPSMG00000008743) #14 HLA-DOB (ENSPSMG00000008851) #15 TAP2 (ENSPSMG00000008940) #16 PSMB8 (ENSPSMG00000009083) #17 TAP1 (ENSPSMG00000009102) #18 PSMB9 (ENSPSMG00000009117) #19 HLA-DMB (ENSPSMG00000009134) #20 HLA-DMA (ENSPSMG00000009171) #21 BRD2 (ENSPSMG00000009223) #22 ENSPSMG00000009252 HLA-DOA (ENSPSMG00000009261) #23 HLA-DPA1 (ENSPSMG00000009402) #24 HLA-DPB1 (ENSPSMG00000009639) ENSPSMG00000009792 #24 Mouse lemur MODERN SPECIES 28 CYP21A2 (ENSMICG00000016652) ENSMICG00000046247 ENSMICG00000016667 ATF6B (ENSMICG00000047519) PRRT1 (ENSMICG00000032288) PPT2 (ENSMICG00000001807) EGFL8 (ENSMICG00000042415) AGPAT1 (ENSMICG00000001813) RNF5 (ENSMICG00000048108) AGER (ENSMICG00000001823) PBX2 (ENSMICG00000001829) GPSM3 (ENSMICG00000026321) NOTCH4 (ENSMICG00000001835) HLA-DMB (ENSMICG00000043729) #20 HLA-DMA (ENSMICG00000010132) #21 BRD2 (ENSMICG00000003693) #22 HLA-DOA (ENSMICG00000047683) #23 HLA-DPA1 (ENSMICG00000003711) #24 HLA-DPB1 (ENSMICG00000030867) ENSMICG00000001373 COL11A2 (ENSMICG00000000879) #25 RXRB (ENSMICG00000000899) #26 SLC39A7 (ENSMICG00000000905) #27 HSD17B8 (ENSMICG00000000908) #28 RING1 (ENSMICG00000030050) #29 VPS52 (ENSMICG00000027900) #31 ENSMICG00000035485 #32 WDR46 (ENSMICG00000000916) #34 PFDN6 (ENSMICG00000000922) #35 RGL2 (ENSMICG00000000926) #36 TAPBP (ENSMICG00000042293) #37 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 220 ENSOGAG00000015917 ENSOGAG00000033148 CYP4F115 (ENSOGAG00000011748) CYP4F113 (ENSOGAG00000007410) ENSOGAG00000028565 CYP4F112 (ENSOGAG00000031204) CYP4F111 (ENSOGAG00000002017) CYP4F3 (ENSOGAG00000032860) CYP4F22 (ENSOGAG00000030936) ENSOGAG00000024112 PGLYRP2 (ENSOGAG00000026199) RASAL3 (ENSOGAG00000033656) WIZ (ENSOGAG00000010952) AKAP8L (ENSOGAG00000010943) AKAP8 (ENSOGAG00000029564) ENSOGAG00000000840 #22 EPHX3 (ENSOGAG00000006687) NOTCH3 (ENSOGAG00000006680) ENSOGAG00000024942 ILVBL (ENSOGAG00000014020) SYDE1 (ENSOGAG00000014015) OR1I1 (ENSOGAG00000003203) CASP14 (ENSOGAG00000024750) CCDC105 (ENSOGAG00000011860) SLC1A6 (ENSOGAG00000029166) ENSOGAG00000033292 OR7C2 (ENSOGAG00000031212) ENSOGAG00000025389 ENSOGAG00000028478 ENSOGAG00000026639 Bushbaby MODERN SPECIES 146 ENSOGAG00000013069 #12 ENSOGAG00000025050 #8 BTNL2 (ENSOGAG00000008396) #9 HLA-DRA (ENSOGAG00000008398) #10 ENSOGAG00000009732 #12 ENSOGAG00000030012 ENSOGAG00000008401 #13 HLA-DQB1 (ENSOGAG00000005662) #14 ENSOGAG00000031343 #16 PSMB8 (ENSOGAG00000013830) #17 TAP1 (ENSOGAG00000013836) #18 PSMB9 (ENSOGAG00000013846) #19 ENSOGAG00000013823 #16 HLA-DMB (ENSOGAG00000032749) #20 HLA-DMA (ENSOGAG00000006029) #21 BRD2 (ENSOGAG00000006473) #22 HLA-DOA (ENSOGAG00000014685) #23 HLA-DPA1 (ENSOGAG00000006476) #24 ENSOGAG00000016138 ENSOGAG00000034269 COL11A2 (ENSOGAG00000025975) #25 RXRB (ENSOGAG00000011689) #26 SLC39A7 (ENSOGAG00000030006) #27 HSD17B8 (ENSOGAG00000006214) #28 RING1 (ENSOGAG00000006220) #29 VPS52 (ENSOGAG00000006222) #31 RPS18 (ENSOGAG00000006225) #32 B3GALT4 (ENSOGAG00000006228) #33 WDR46 (ENSOGAG00000006230) #34 ENSOGAG00000028341 #35 RGL2 (ENSOGAG00000003996) #36 Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154993 #12 ENSGT00940000155371.m.a #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Eulipotyphla ANCESTRAL SPECIES 124 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 Common shrew MODERN SPECIES 6707 HLA-DMB (ENSSARG00000006772) #20 HLA-DMA (ENSSARG00000006783) #21 BRD2 (ENSSARG00000006789) #22 Hedgehog MODERN SPECIES 8504 ENSEEUG00000010670 #20 BRD2 (ENSEEUG00000010734) #22 COL11A2 (ENSEEUG00000010805) #25 RXRB (ENSEEUG00000012064) #26 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154993 #12 ENSGT00940000155371.m.a #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000154993 #12 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT01030000234972 ENSGT00940000161403 #36 Artiodactyla_a ANCESTRAL SPECIES 19 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000155371.m.b #11 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000154993 #12 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Camelidae ANCESTRAL SPECIES 13 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371.m.a.b.a #11 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b.ib #14 ENSGT00940000155371.m.b #11 ENSGT00940000154723.b.jb #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Alpaca MODERN SPECIES 2774 ENSVPAG00000008046 #20 BRD2 (ENSVPAG00000008048) #22 HLA-DOA (ENSVPAG00000008049) #23 HLA-DPA1 (ENSVPAG00000008050) #24 ENSVPAG00000008051 Arabian camel MODERN SPECIES 12 ENSCDRG00005021434 #11 ENSCDRG00005021439 #11 ENSCDRG00005021448 #13 ENSCDRG00005021452 #14 ENSCDRG00005021455 #14 TAP2 (ENSCDRG00005021460) #16 ENSCDRG00005021466 #11 ENSCDRG00005021469 #13 ENSCDRG00005021472 #14 HLA-DOB (ENSCDRG00005021474) #15 PSMB8 (ENSCDRG00005021475) #17 TAP1 (ENSCDRG00005021477) #18 PSMB9 (ENSCDRG00005021480) #19 HLA-DMB (ENSCDRG00005021484) #20 HLA-DMA (ENSCDRG00005021489) #21 BRD2 (ENSCDRG00005021496) #22 HLA-DOA (ENSCDRG00005021502) #23 HLA-DPA1 (ENSCDRG00005021505) #24 HLA-DPB1 (ENSCDRG00005021506) COL11A2 (ENSCDRG00005021542) #25 RXRB (ENSCDRG00005021632) #26 SLC39A7 (ENSCDRG00005021641) #27 HSD17B8 (ENSCDRG00005021643) #28 RING1 (ENSCDRG00005021646) #29 VPS52 (ENSCDRG00005021653) #31 RPS18 (ENSCDRG00005021659) #32 B3GALT4 (ENSCDRG00005021661) #33 WDR46 (ENSCDRG00005021663) #34 PFDN6 (ENSCDRG00005021673) #35 RGL2 (ENSCDRG00005021678) #36 TAPBP (ENSCDRG00005021686) #37 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d #13 ENSGT00940000155371.m.a.a #11 ENSGT00940000154993 #12 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000161821.c.b #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Pecora ANCESTRAL SPECIES 21 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d #13 ENSGT00940000155371.m.a.b.a #11 ENSGT00940000155371.m.a.b.b #11 ENSGT00940000154993 #12 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.c.b #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Yarkand deer MODERN SPECIES 30 MLIP (ENSCHYG00000004113) TINAG (ENSCHYG00000004199) LRRC1 (ENSCHYG00000004239) KLHL31 (ENSCHYG00000004258) GCLC (ENSCHYG00000004293) ENSCHYG00000004336 #11 ENSCHYG00000004358 #13 ENSCHYG00000004368 #14 HLA-DOB (ENSCHYG00000004391) #15 TAP2 (ENSCHYG00000004426) #16 PSMB8 (ENSCHYG00000004467) #17 TAP1 (ENSCHYG00000004483) #18 ENSCHYG00000004500 #19 HLA-DMB (ENSCHYG00000004514) #20 HLA-DMA (ENSCHYG00000004520) #21 BRD2 (ENSCHYG00000004539) #22 HLA-DOA (ENSCHYG00000004561) #23 COL11A2 (ENSCHYG00000004624) #25 RING1 (ENSCHYG00000004682) #29 VPS52 (ENSCHYG00000004695) #31 RPS18 (ENSCHYG00000004733) #32 B3GALT4 (ENSCHYG00000004743) #33 WDR46 (ENSCHYG00000004759) #34 PFDN6 (ENSCHYG00000004871) #35 RGL2 (ENSCHYG00000004896) #36 TAPBP (ENSCHYG00000004933) #37 ZBTB22 (ENSCHYG00000004990) DAXX (ENSCHYG00000005013) SMIM40 (ENSCHYG00000005026) KIFC1 (ENSCHYG00000005051) PHF1 (ENSCHYG00000005145) Percora_a ANCESTRAL SPECIES 12 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Siberian musk deer MODERN SPECIES 355 FAM83B (ENSMMSG00000020897) TINAG (ENSMMSG00000020918) MLIP (ENSMMSG00000021042) LRRC1 (ENSMMSG00000021202) KLHL31 (ENSMMSG00000021339) GCLC (ENSMMSG00000021373) ENSMMSG00000021536 #11 ENSMMSG00000022087 #13 ENSMMSG00000022107 #14 HLA-DOB (ENSMMSG00000022133) #15 TAP1 (ENSMMSG00000022156) #18 PSMB8 (ENSMMSG00000022217) #17 PSMB9 (ENSMMSG00000022236) #19 HLA-DMB (ENSMMSG00000022257) #20 HLA-DMA (ENSMMSG00000022283) #21 BRD2 (ENSMMSG00000022334) #22 HLA-DOA (ENSMMSG00000022389) #23 COL11A2 (ENSMMSG00000022475) #25 RXRB (ENSMMSG00000023046) #26 SLC39A7 (ENSMMSG00000023058) #27 HSD17B8 (ENSMMSG00000023067) #28 RING1 (ENSMMSG00000023081) #29 VPS52 (ENSMMSG00000023094) #31 RPS18 (ENSMMSG00000023117) #32 B3GALT4 (ENSMMSG00000023125) #33 WDR46 (ENSMMSG00000023133) #34 ENSMMSG00000023143 #35 RGL2 (ENSMMSG00000023157) #36 TAPBP (ENSMMSG00000023185) #37 ZBTB22 (ENSMMSG00000023203) DAXX (ENSMMSG00000023208) Bovidae ANCESTRAL SPECIES 13 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b.nb #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Caprinae ANCESTRAL SPECIES 16 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b.nb #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Goat MODERN SPECIES 15 ENSCHIG00000020109 LRRC1 (ENSCHIG00000021002) KLHL31 (ENSCHIG00000003573) GCLC (ENSCHIG00000013397) ENSCHIG00000009662 #11 ENSCHIG00000022158 #13 ENSCHIG00000013102 #14 HLA-DOB (ENSCHIG00000010527) #15 ENSCHIG00000019853 TAP2 (ENSCHIG00000017732) #16 PSMB8 (ENSCHIG00000012829) #17 TAP1 (ENSCHIG00000021983) #18 PSMB9 (ENSCHIG00000021513) #19 HLA-DMB (ENSCHIG00000026519) #20 HLA-DMA (ENSCHIG00000009464) #21 BRD2 (ENSCHIG00000013946) #22 HLA-DOA (ENSCHIG00000014302) #23 COL11A2 (ENSCHIG00000012269) #25 RXRB (ENSCHIG00000010266) #26 SLC39A7 (ENSCHIG00000024209) #27 HSD17B8 (ENSCHIG00000017839) #28 RING1 (ENSCHIG00000015685) #29 VPS52 (ENSCHIG00000023524) #31 RPS18 (ENSCHIG00000025263) ##32 B3GALT4 (ENSCHIG00000013295) #33 WDR46 (ENSCHIG00000017786) #34 ENSCHIG00000021078 #35 RGL2 (ENSCHIG00000009307) #36 TAPBP (ENSCHIG00000010108) #37 ZBTB22 (ENSCHIG00000003375) ENSCHIG00000013938 Rambouillet Sheep MODERN SPECIES 12 GCLC (ENSOARG00020024970) ENSOARG00020025012 #11 ENSOARG00020025022 #13 ENSOARG00020025038 #13 ENSOARG00020025077 #14 DYA (ENSOARG00020025089) #13 ENSOARG00020025100 ENSOARG00020025111 #14 HLA-DOB (ENSOARG00020025120) #15 TAP2 (ENSOARG00020025129) #16 PSMB8 (ENSOARG00020025156) #17 TAP1 (ENSOARG00020025187) #18 ENSOARG00020025249 #19 HLA-DMB (ENSOARG00020025272) #20 HLA-DMA (ENSOARG00020025286) #21 BRD2 (ENSOARG00020011534) #22 HLA-DOA (ENSOARG00020011582) #23 COL11A2 (ENSOARG00020011636) #25 RXRB (ENSOARG00020011980) #26 SLC39A7 (ENSOARG00020012152) #27 HSD17B8 (ENSOARG00020012212) #28 RING1 (ENSOARG00020012299) #29 VPS52 (ENSOARG00020012385) #31 RPS18 (ENSOARG00020012536) #32 B3GALT4 (ENSOARG00020012594) #33 WDR46 (ENSOARG00020012626) #34 PFDN6 (ENSOARG00020012726) #35 RGL2 (ENSOARG00020012842) #36 TAPBP (ENSOARG00020013171) #37 ZBTB22 (ENSOARG00020013358) DAXX (ENSOARG00020013385) Bovinae ANCESTRAL SPECIES 9 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b.nb.d #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 American bison MODERN SPECIES 3186 MLIP (ENSBBBG00000016140) LRRC1 (ENSBBBG00000016027) KLHL31 (ENSBBBG00000002569) GCLC (ENSBBBG00000015998) ENSBBBG00000015836 #11 ENSBBBG00000015297 #13 ENSBBBG00000015280 #14 HLA-DOB (ENSBBBG00000015275) #15 TAP2 (ENSBBBG00000015257) #16 PSMB8 (ENSBBBG00000015244) #17 TAP1 (ENSBBBG00000015234) #18 PSMB9 (ENSBBBG00000003777) #19 ENSBBBG00000015200 HLA-DMB (ENSBBBG00000008914) #20 HLA-DMA (ENSBBBG00000015169) #21 BRD2 (ENSBBBG00000002785) #22 HLA-DOA (ENSBBBG00000015112) #23 ENSBBBG00000003746 #25 RXRB (ENSBBBG00000015089) #26 SLC39A7 (ENSBBBG00000014969) #27 HSD17B8 (ENSBBBG00000003696) #28 RING1 (ENSBBBG00000003692) #29 VPS52 (ENSBBBG00000003598) #31 RPS18 (ENSBBBG00000003625) #32 B3GALT4 (ENSBBBG00000003638) #33 WDR46 (ENSBBBG00000014933) #34 PFDN6 (ENSBBBG00000014925) #35 RGL2 (ENSBBBG00000000845) #36 TAPBP (ENSBBBG00000000871) #37 ZBTB22 (ENSBBBG00000000917) DAXX (ENSBBBG00000000938) Bos ANCESTRAL SPECIES 17 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b.nb.d #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Bos_b ANCESTRAL SPECIES 8 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b.nb.d #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Hybrid Bos Indicus MODERN SPECIES 15 ENSBIXG00005015134 LRRC1 (ENSBIXG00005002222) KLHL31 (ENSBIXG00005007502) GCLC (ENSBIXG00005015026) ENSBIXG00005014945 #11 ENSBIXG00005014931 #13 ENSBIXG00005007128 #14 HLA-DOB (ENSBIXG00005014905) #15 TAP2 (ENSBIXG00005014872) #16 PSMB8 (ENSBIXG00005014824) #17 TAP1 (ENSBIXG00005014801) #18 PSMB9 (ENSBIXG00005014787) #19 ENSBIXG00005014770 HLA-DMB (ENSBIXG00005014762) #20 HLA-DMA (ENSBIXG00005014743) #21 BRD2 (ENSBIXG00005014704) #22 HLA-DOA (ENSBIXG00005014640) #23 COL11A2 (ENSBIXG00005014598) #25 RXRB (ENSBIXG00005014520) #26 SLC39A7 (ENSBIXG00005014473) #27 HSD17B8 (ENSBIXG00005001937) #28 RING1 (ENSBIXG00005006128) #29 VPS52 (ENSBIXG00005014413) #31 RPS18 (ENSBIXG00005006736) ##32 B3GALT4 (ENSBIXG00005014338) #33 WDR46 (ENSBIXG00005014304) #34 PFDN6 (ENSBIXG00005014270) #35 RGL2 (ENSBIXG00005014224) #36 TAPBP (ENSBIXG00005006125) #37 ZBTB22 (ENSBIXG00005014096) DAXX (ENSBIXG00005001833) Cow MODERN SPECIES 15 MLIP (ENSBTAG00000014581) LRRC1 (ENSBTAG00000017533) KLHL31 (ENSBTAG00000018167) GCLC (ENSBTAG00000015571) DSB (ENSBTAG00000050757) #11 BOLA-DYA (ENSBTAG00000002581) #13 BOLA-DYB (ENSBTAG00000045923) #14 BOLA-DOB (ENSBTAG00000047707) #15 TAP2 (ENSBTAG00000003038) #16 PSMB8 (ENSBTAG00000003039) #17 TAP1 (ENSBTAG00000008953) #18 PSMB9 (ENSBTAG00000008954) #19 H2B (ENSBTAG00000051545) BOLA-DMB (ENSBTAG00000012451) #20 BOLA-DMA (ENSBTAG00000015730) #21 BRD2 (ENSBTAG00000011074) #22 BOLA-DOA (ENSBTAG00000006490) #23 COL11A2 (ENSBTAG00000000601) #25 RXRB (ENSBTAG00000000602) #26 SLC39A7 (ENSBTAG00000008191) #27 HSD17B8 (ENSBTAG00000020927) #28 RING1 (ENSBTAG00000018884) #29 VPS52 (ENSBTAG00000002643) #31 RPS18 (ENSBTAG00000002648) ##32 B3GALT4 (ENSBTAG00000025669) #33 WDR46 (ENSBTAG00000016824) #34 PFDN6 (ENSBTAG00000010723) #35 RGL2 (ENSBTAG00000016827) #36 TAPBP (ENSBTAG00000016828) #37 ZBTB22 (ENSBTAG00000016829) DAXX (ENSBTAG00000016830) Bos_a ANCESTRAL SPECIES 11 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000161821.d.f #13 ENSGT00940000154723.b.nb.d #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.o.a #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Domestic yak DUPLICATION Domestic yak MODERN SPECIES 27 ENSBGRG00000024308 ENSBGRG00000024300 ENSBGRG00000024282 ENSBGRG00000024273 ENSBGRG00000024190 ENSBGRG00000024011 ENSBGRG00000023854 ENSBGRG00000023633 ENSBGRG00000022876 CYP4F22 (ENSBGRG00000022745) PGLYRP2 (ENSBGRG00000022693) RASAL3 (ENSBGRG00000022665) WIZ (ENSBGRG00000022240) AKAP8L (ENSBGRG00000022043) AKAP8 (ENSBGRG00000021898) ENSBGRG00000021854 #22 ENSBGRG00000021799 EPHX3 (ENSBGRG00000021673) NOTCH3 (ENSBGRG00000018066) ENSBGRG00000017844 ILVBL (ENSBGRG00000017727) SYDE1 (ENSBGRG00000017591) ENSBGRG00000017568 ENSBGRG00000017455 CASP14 (ENSBGRG00000017337) CCDC105 (ENSBGRG00000017152) SLC1A6 (ENSBGRG00000016741) ENSBGRG00000016668 ENSBGRG00000016627 ENSBGRG00000016606 ENSBGRG00000016595 Domestic yak MODERN SPECIES 16 MLIP (ENSBGRG00000023693) LRRC1 (ENSBGRG00000023507) KLHL31 (ENSBGRG00000023447) GCLC (ENSBGRG00000022619) ENSBGRG00000022571 ENSBGRG00000022508 #11 ENSBGRG00000022452 #13 ENSBGRG00000022408 #14 HLA-DOB (ENSBGRG00000022347) #15 TAP2 (ENSBGRG00000022189) #16 PSMB8 (ENSBGRG00000022108) #17 TAP1 (ENSBGRG00000022060) #18 ENSBGRG00000021991 #19 HLA-DMB (ENSBGRG00000021922) #20 HLA-DMA (ENSBGRG00000021851) #21 BRD2 (ENSBGRG00000021629) #22 HLA-DOA (ENSBGRG00000021588) #23 COL11A2 (ENSBGRG00000019137) #25 RXRB (ENSBGRG00000019018) #26 SLC39A7 (ENSBGRG00000018980) #27 HSD17B8 (ENSBGRG00000018839) #28 RING1 (ENSBGRG00000018754) #29 VPS52 (ENSBGRG00000018459) #31 B3GALT4 (ENSBGRG00000018285) #33 WDR46 (ENSBGRG00000017950) #34 PFDN6 (ENSBGRG00000017800) #35 RGL2 (ENSBGRG00000017715) #36 TAPBP (ENSBGRG00000017312) #37 ZBTB22 (ENSBGRG00000017270) DAXX (ENSBGRG00000017181) SMIM40 (ENSBGRG00000017145) Wild yak DUPLICATION Wild yak MODERN SPECIES 1619 ENSBMUG00000011458 ENSBMUG00000011482 ENSBMUG00000011515 ENSBMUG00000011552 ENSBMUG00000011627 ENSBMUG00000011731 ENSBMUG00000011774 ENSBMUG00000011822 ENSBMUG00000011875 CYP4F22 (ENSBMUG00000011890) PGLYRP2 (ENSBMUG00000011932) RASAL3 (ENSBMUG00000011972) WIZ (ENSBMUG00000012029) AKAP8L (ENSBMUG00000012103) AKAP8 (ENSBMUG00000012119) ENSBMUG00000012134 #22 ENSBMUG00000012143 EPHX3 (ENSBMUG00000012149) NOTCH3 (ENSBMUG00000013018) ENSBMUG00000013201 ILVBL (ENSBMUG00000013223) ENSBMUG00000013242 ENSBMUG00000013258 ENSBMUG00000013277 ENSBMUG00000013302 CASP14 (ENSBMUG00000013317) CCDC105 (ENSBMUG00000013339) ENSBMUG00000013356 ENSBMUG00000013368 ENSBMUG00000013377 ENSBMUG00000013410 Wild yak MODERN SPECIES 401 LRRC1 (ENSBMUG00000005342) KLHL31 (ENSBMUG00000005354) GCLC (ENSBMUG00000005430) ENSBMUG00000006036 #11 ENSBMUG00000007873 #13 ENSBMUG00000007890 #14 HLA-DOB (ENSBMUG00000007908) #15 TAP2 (ENSBMUG00000007931) #16 PSMB8 (ENSBMUG00000007942) #17 TAP1 (ENSBMUG00000007967) #18 PSMB9 (ENSBMUG00000007982) #19 ENSBMUG00000007993 HLA-DMB (ENSBMUG00000008003) #20 HLA-DMA (ENSBMUG00000008047) #21 BRD2 (ENSBMUG00000008066) #22 HLA-DOA (ENSBMUG00000008090) #23 COL11A2 (ENSBMUG00000008342) #25 RXRB (ENSBMUG00000008461) #26 SLC39A7 (ENSBMUG00000008706) #27 HSD17B8 (ENSBMUG00000008752) #28 RING1 (ENSBMUG00000008786) #29 VPS52 (ENSBMUG00000008802) #31 ENSBMUG00000008818 #32 B3GALT4 (ENSBMUG00000008835) #33 WDR46 (ENSBMUG00000008867) #34 PFDN6 (ENSBMUG00000008885) #35 RGL2 (ENSBMUG00000008900) #36 TAPBP (ENSBMUG00000008952) #37 ZBTB22 (ENSBMUG00000008980) DAXX (ENSBMUG00000008993) Cetacea ANCESTRAL SPECIES 7 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.g #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Blue whale MODERN SPECIES 2 HCRTR2 (ENSBMSG00010011945) FAM83B (ENSBMSG00010011937) TINAG (ENSBMSG00010011903) MLIP (ENSBMSG00010011840) LRRC1 (ENSBMSG00010011758) KLHL31 (ENSBMSG00010011739) GCLC (ENSBMSG00010011645) ENSBMSG00010011564 #11 HLA-DOB (ENSBMSG00010011526) #15 TAP2 (ENSBMSG00010011505) #16 PSMB8 (ENSBMSG00010011493) #17 TAP1 (ENSBMSG00010011477) #18 PSMB9 (ENSBMSG00010011462) #19 HLA-DMB (ENSBMSG00010011446) #20 HLA-DMA (ENSBMSG00010011432) #21 BRD2 (ENSBMSG00010011399) #22 HLA-DOA (ENSBMSG00010011380) #23 ENSBMSG00010011366 COL11A2 (ENSBMSG00010010982) #25 RXRB (ENSBMSG00010010818) #26 SLC39A7 (ENSBMSG00010010802) #27 HSD17B8 (ENSBMSG00010010786) #28 ENSBMSG00010010769 #29 VPS52 (ENSBMSG00010010756) #31 RPS18 (ENSBMSG00010010743) #32 B3GALT4 (ENSBMSG00010010736) #33 WDR46 (ENSBMSG00010010725) #34 ENSBMSG00010010714 #35 RGL2 (ENSBMSG00010010689) #36 TAPBP (ENSBMSG00010010652) #37 ZBTB22 (ENSBMSG00010010638) Odontoceti ANCESTRAL SPECIES 5 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.g #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.g #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Odontoceti_b ANCESTRAL SPECIES 6 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000154732.q.b.a ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.g #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Monodontidae ANCESTRAL SPECIES 4 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 ENSGT00390000011908 ENSGT00940000155371.m.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000154732.q.b.a ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022.g #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Narwhal MODERN SPECIES 310 FAM83B (ENSMMNG00015013752) TINAG (ENSMMNG00015013728) ENSMMNG00015013701 MLIP (ENSMMNG00015013648) LRRC1 (ENSMMNG00015013594) KLHL31 (ENSMMNG00015013579) GCLC (ENSMMNG00015013551) ENSMMNG00015013533 #11 HLA-DOB (ENSMMNG00015013519) #15 TAP2 (ENSMMNG00015013343) #16 PSMB8 (ENSMMNG00015013325) #17 TAP1 (ENSMMNG00015013311) #18 PSMB9 (ENSMMNG00015013288) #19 HLA-DMB (ENSMMNG00015013276) #20 HLA-DMA (ENSMMNG00015013256) #21 BRD2 (ENSMMNG00015013179) #22 ENSMMNG00015013152 HLA-DOA (ENSMMNG00015013123) #23 ENSMMNG00015013117 COL11A2 (ENSMMNG00015012846) #25 RXRB (ENSMMNG00015012697) #26 SLC39A7 (ENSMMNG00015012682) #27 HSD17B8 (ENSMMNG00015012658) #28 ENSMMNG00015012638 #29 VPS52 (ENSMMNG00015012607) #31 ENSMMNG00015012591 #32 B3GALT4 (ENSMMNG00015012584) #33 WDR46 (ENSMMNG00015012564) #34 PFDN6 (ENSMMNG00015012541) #35 RGL2 (ENSMMNG00015012522) #36 TAPBP (ENSMMNG00015012480) #37 Beluga whale MODERN SPECIES 8 FAM83B (ENSDLEG00000021984) TINAG (ENSDLEG00000021985) ENSDLEG00000021986 MLIP (ENSDLEG00000021987) LRRC1 (ENSDLEG00000021988) ENSDLEG00000021989 KLHL31 (ENSDLEG00000021990) GCLC (ENSDLEG00000021991) ENSDLEG00000021992 #11 TAP2 (ENSDLEG00000021994) #16 PSMB8 (ENSDLEG00000021995) #17 TAP1 (ENSDLEG00000021996) #18 PSMB9 (ENSDLEG00000008143) #19 HLA-DMB (ENSDLEG00000008166) #20 HLA-DMA (ENSDLEG00000008210) #21 BRD2 (ENSDLEG00000008248) #22 ENSDLEG00000008322 HLA-DOA (ENSDLEG00000008482) #23 COL11A2 (ENSDLEG00000008562) #25 RXRB (ENSDLEG00000008760) #26 SLC39A7 (ENSDLEG00000008789) #27 HSD17B8 (ENSDLEG00000008819) #28 RING1 (ENSDLEG00000008919) #29 VPS52 (ENSDLEG00000008948) #31 RPS18 (ENSDLEG00000009077) #32 B3GALT4 (ENSDLEG00000009097) #33 WDR46 (ENSDLEG00000009126) #34 PFDN6 (ENSDLEG00000009394) #35 RGL2 (ENSDLEG00000009432) #36 ENSDLEG00000009529 TAPBP (ENSDLEG00000009539) #37 Vaquita MODERN SPECIES 2 HCRTR2 (ENSPSNG00000016655) FAM83B (ENSPSNG00000016755) TINAG (ENSPSNG00000016830) MLIP (ENSPSNG00000017046) ENSPSNG00000017462 KLHL31 (ENSPSNG00000017492) GCLC (ENSPSNG00000017555) ENSPSNG00000017762 #11 HLA-DOB (ENSPSNG00000017969) #15 TAP2 (ENSPSNG00000018051) #16 PSMB8 (ENSPSNG00000018160) #17 TAP1 (ENSPSNG00000018201) #18 PSMB9 (ENSPSNG00000018232) #19 HLA-DMB (ENSPSNG00000018284) #20 HLA-DMA (ENSPSNG00000018364) #21 BRD2 (ENSPSNG00000018549) #22 ENSPSNG00000018620 HLA-DOA (ENSPSNG00000018672) #23 ENSPSNG00000018732 COL11A2 (ENSPSNG00000019010) #25 RXRB (ENSPSNG00000020305) #26 SLC39A7 (ENSPSNG00000020344) #27 HSD17B8 (ENSPSNG00000020389) #28 RING1 (ENSPSNG00000020433) #29 VPS52 (ENSPSNG00000020483) #31 B3GALT4 (ENSPSNG00000020525) #33 WDR46 (ENSPSNG00000020574) #34 PFDN6 (ENSPSNG00000020614) #35 RGL2 (ENSPSNG00000011206) #36 TAPBP (ENSPSNG00000011408) #37 ZBTB22 (ENSPSNG00000011484) Dolphin MODERN SPECIES 2738 HLA-DOB (ENSTTRG00000004249) #15 TAP2 (ENSTTRG00000004254) #16 PSMB8 (ENSTTRG00000004259) #17 TAP1 (ENSTTRG00000004264) #18 PSMB9 (ENSTTRG00000004272) #19 HLA-DMB (ENSTTRG00000004276) #20 HLA-DMA (ENSTTRG00000004277) #21 BRD2 (ENSTTRG00000004278) #22 HLA-DOA (ENSTTRG00000004282) #23 COL11A2 (ENSTTRG00000004283) #25 RXRB (ENSTTRG00000004291) #26 SLC39A7 (ENSTTRG00000004293) #27 HSD17B8 (ENSTTRG00000004294) #28 RING1 (ENSTTRG00000004296) #29 VPS52 (ENSTTRG00000004298) #31 RPS18 (ENSTTRG00000004302) #32 WDR46 (ENSTTRG00000004304) #34 PFDN6 (ENSTTRG00000004306) #35 RGL2 (ENSTTRG00000004307) #36 TAPBP (ENSTTRG00000004309) #37 ZBTB22 (ENSTTRG00000004311) DAXX (ENSTTRG00000004312) Sperm whale DUPLICATION Sperm whale MODERN SPECIES 9 GFRAL (ENSPCTG00005020543) HCRTR2 (ENSPCTG00005020624) FAM83B (ENSPCTG00005020744) TINAG (ENSPCTG00005020766) MLIP (ENSPCTG00005020921) LRRC1 (ENSPCTG00005021134) KLHL31 (ENSPCTG00005021169) GCLC (ENSPCTG00005021190) ENSPCTG00005021294 HLA-DOB (ENSPCTG00005021383) #15 TAP2 (ENSPCTG00005021415) #16 PSMB8 (ENSPCTG00005021456) #17 TAP1 (ENSPCTG00005021480) #18 PSMB9 (ENSPCTG00005008969) #19 HLA-DMB (ENSPCTG00005009080) #20 ENSPCTG00005009114 #22 HLA-DOA (ENSPCTG00005009319) #23 COL11A2 (ENSPCTG00005009478) #25 RXRB (ENSPCTG00005011572) #26 SLC39A7 (ENSPCTG00005011775) #27 HSD17B8 (ENSPCTG00005011876) #28 RING1 (ENSPCTG00005011923) #29 ENSPCTG00005011963 KIFC1 (ENSPCTG00005012002) PHF1 (ENSPCTG00005012052) CUTA (ENSPCTG00005012115) SYNGAP1 (ENSPCTG00005012336) ENSPCTG00005014008 ZBTB9 (ENSPCTG00005014057) BAK1 (ENSPCTG00005014079) ENSPCTG00005014198 Sperm whale MODERN SPECIES 603 ENSPCTG00005016431 #21 ENSPCTG00005016571 #22 Suina ANCESTRAL SPECIES 17 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000155371.n #11 ENSGT00940000155371.m.a.a #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00940000158644 ENSGT00940000159467 ENSGT00730000111274 ENSGT01070000253744.a.a.b.b ENSGT00940000157889 ENSGT00940000161065 ENSGT00390000015862 ENSGT00940000154025.b ENSGT00940000158352 Pig MODERN SPECIES 15 ENSSSCG00000031336 #11 ENSSSCG00000061569 #11 ENSSSCG00000001455 #11 ENSSSCG00000001456 #13 SLA-DQB1 (ENSSSCG00000001457) #14 ENSSSCG00000043413 ENSSSCG00000001458 #11 ENSSSCG00000063263 #14 HLA-DOB (ENSSSCG00000001459) #15 TAP2 (ENSSSCG00000025593) #16 PSMB8 (ENSSSCG00000026951) #17 PSMB9 (ENSSSCG00000001463) #19 TAP1 (ENSSSCG00000025618) #18 SLA-DMB (ENSSSCG00000001469) #20 SLA-DMA (ENSSSCG00000001470) #21 BRD2 (ENSSSCG00000001471) #22 SLA-DOA (ENSSSCG00000001472) #23 COL11A2 (ENSSSCG00000001473) #25 RXRB (ENSSSCG00000001474) #26 SLC39A7 (ENSSSCG00000001475) #27 HSD17B8 (ENSSSCG00000001476) #28 RING1 (ENSSSCG00000001477) #29 BMP5 (ENSSSCG00000001478) HMGCLL1 (ENSSSCG00000001479) GFRAL (ENSSSCG00000001480) HCRTR2 (ENSSSCG00000001481) FAM83B (ENSSSCG00000001483) TINAG (ENSSSCG00000001484) MLIP (ENSSSCG00000001485) LRRC1 (ENSSSCG00000001486) KLHL31 (ENSSSCG00000001487) Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 769 TPM4 (ENSCWAG00000008256) ENSCWAG00000008234 ENSCWAG00000008205 ENSCWAG00000008182 ENSCWAG00000008119 ENSCWAG00000008036 CYP4F3 (ENSCWAG00000007816) ENSCWAG00000009707 ENSCWAG00000009689 CYP4F22 (ENSCWAG00000009588) PGLYRP2 (ENSCWAG00000009528) RASAL3 (ENSCWAG00000009433) WIZ (ENSCWAG00000009199) AKAP8L (ENSCWAG00000009126) AKAP8 (ENSCWAG00000009086) ENSCWAG00000009037 #22 ENSCWAG00000008990 EPHX3 (ENSCWAG00000008924) ENSCWAG00000008892 NOTCH3 (ENSCWAG00000008816) ILVBL (ENSCWAG00000008774) SYDE1 (ENSCWAG00000008680) OR1I1 (ENSCWAG00000008665) CASP14 (ENSCWAG00000008585) CCDC105 (ENSCWAG00000008495) SLC1A6 (ENSCWAG00000008123) ENSCWAG00000008078 ENSCWAG00000008055 ENSCWAG00000007999 ENSCWAG00000007986 ENSCWAG00000007935 Chacoan peccary MODERN SPECIES 782 ENSCWAG00000017173 BTNL2 (ENSCWAG00000017038) #9 HLA-DRA (ENSCWAG00000016997) #10 ENSCWAG00000016954 #12 ENSCWAG00000016932 #11 ENSCWAG00000016903 #13 HLA-DQB1 (ENSCWAG00000016835) #14 ENSCWAG00000016773 #15 ENSCWAG00000016717 #15 TAP2 (ENSCWAG00000016671) #16 PSMB8 (ENSCWAG00000016617) #17 TAP1 (ENSCWAG00000016313) #18 PSMB9 (ENSCWAG00000016225) #19 HLA-DMB (ENSCWAG00000016177) #20 HLA-DMA (ENSCWAG00000016104) #21 BRD2 (ENSCWAG00000015939) #22 HLA-DOA (ENSCWAG00000015899) #23 COL11A2 (ENSCWAG00000013860) #25 SLC39A7 (ENSCWAG00000013691) #27 HSD17B8 (ENSCWAG00000013599) #28 RING1 (ENSCWAG00000013538) #29 BMP5 (ENSCWAG00000013472) HMGCLL1 (ENSCWAG00000012792) GFRAL (ENSCWAG00000012676) HCRTR2 (ENSCWAG00000012598) FAM83B (ENSCWAG00000012542) TINAG (ENSCWAG00000012390) MLIP (ENSCWAG00000011825) LRRC1 (ENSCWAG00000011723) KLHL31 (ENSCWAG00000011695) GCLC (ENSCWAG00000011415) Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000154993 #12 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Carnivora ANCESTRAL SPECIES 4 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Caniformia ANCESTRAL SPECIES 3 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Canidae ANCESTRAL SPECIES 6 ENSGT00940000162450.p #7 ENSGT00940000162079 #8 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815.g.b #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Red fox DUPLICATION Red fox MODERN SPECIES 5 ENSVVUG00000020319 ENSVVUG00000020321 ENSVVUG00000020322 ENSVVUG00000020323 ENSVVUG00000020324 ENSVVUG00000020325 ENSVVUG00000020329 CYP4F2 (ENSVVUG00000020330) CYP4F8 (ENSVVUG00000020339) CYP4F22 (ENSVVUG00000020345) PGLYRP2 (ENSVVUG00000020368) RASAL3 (ENSVVUG00000020370) WIZ (ENSVVUG00000020383) AKAP8L (ENSVVUG00000020394) AKAP8 (ENSVVUG00000020457) ENSVVUG00000020467 #22 EPHX3 (ENSVVUG00000020533) NOTCH3 (ENSVVUG00000020620) ILVBL (ENSVVUG00000021444) SYDE1 (ENSVVUG00000021449) ENSVVUG00000021453 CASP14 (ENSVVUG00000021454) CCDC105 (ENSVVUG00000021459) SLC1A6 (ENSVVUG00000021456) OR7C2 (ENSVVUG00000021463) ENSVVUG00000021464 ENSVVUG00000021466 ENSVVUG00000021467 ENSVVUG00000021468 ENSVVUG00000021469 ENSVVUG00000021470 Red fox MODERN SPECIES 7 ENSVVUG00000025071 #14 HLA-DOB (ENSVVUG00000025078) #15 TAP2 (ENSVVUG00000025111) #16 PSMB8 (ENSVVUG00000025115) #17 TAP1 (ENSVVUG00000025116) #18 PSMB9 (ENSVVUG00000025119) #19 HLA-DMB (ENSVVUG00000025122) #20 HLA-DMA (ENSVVUG00000025127) #21 BRD2 (ENSVVUG00000025130) #22 HLA-DOA (ENSVVUG00000025133) #23 HLA-DPA1 (ENSVVUG00000025137) #24 ENSVVUG00000025174 RXRB (ENSVVUG00000025262) #26 SLC39A7 (ENSVVUG00000025265) #27 HSD17B8 (ENSVVUG00000025268) #28 RING1 (ENSVVUG00000025271) #29 ENSVVUG00000025286 #31 RPS18 (ENSVVUG00000025443) #32 B3GALT4 (ENSVVUG00000025447) #33 WDR46 (ENSVVUG00000025460) #34 PFDN6 (ENSVVUG00000025545) #35 RGL2 (ENSVVUG00000025551) #36 TAPBP (ENSVVUG00000025586) #37 ZBTB22 (ENSVVUG00000025590) Canis_lupus ANCESTRAL SPECIES 11 ENSGT00940000162450.o #7 ENSGT00940000162079 #8 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815.g.b #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.e.b #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 Dingo DUPLICATION Dingo MODERN SPECIES 112 ENSCAFG00020009647 ENSCAFG00020009643 ENSCAFG00020009639 ENSCAFG00020009635 ENSCAFG00020009625 ENSCAFG00020009621 ENSCAFG00020009613 ENSCAFG00020009611 CYP4F8 (ENSCAFG00020009605) CYP4F22 (ENSCAFG00020009588) PGLYRP2 (ENSCAFG00020009549) RASAL3 (ENSCAFG00020009538) WIZ (ENSCAFG00020009522) AKAP8L (ENSCAFG00020009405) AKAP8 (ENSCAFG00020009384) ENSCAFG00020009378 #22 ENSCAFG00020009367 EPHX3 (ENSCAFG00020009361) NOTCH3 (ENSCAFG00020008048) ILVBL (ENSCAFG00020007952) SYDE1 (ENSCAFG00020007950) CASP14 (ENSCAFG00020007940) CCDC105 (ENSCAFG00020007933) SLC1A6 (ENSCAFG00020007848) OR1I1 (ENSCAFG00020007835) ENSCAFG00020007829 ENSCAFG00020007824 ENSCAFG00020007823 ENSCAFG00020007818 ENSCAFG00020007812 ENSCAFG00020007803 Dingo MODERN SPECIES 276 ENSCAFG00020001614 BTNL2 (ENSCAFG00020001628) #9 ENSCAFG00020001656 HLA-DRA (ENSCAFG00020001663) #10 ENSCAFG00020001671 #11 ENSCAFG00020001673 #13 HLA-DQB1 (ENSCAFG00020001679) #14 ENSCAFG00020001685 #14 HLA-DOB (ENSCAFG00020001693) #15 TAP2 (ENSCAFG00020001827) #16 PSMB8 (ENSCAFG00020002521) #17 TAP1 (ENSCAFG00020002523) #18 PSMB9 (ENSCAFG00020002528) #19 HLA-DMB (ENSCAFG00020002532) #20 HLA-DMA (ENSCAFG00020002536) #21 BRD2 (ENSCAFG00020002542) #22 HLA-DOA (ENSCAFG00020002545) #23 ENSCAFG00020002592 ENSCAFG00020003072 #25 ENSCAFG00020003093 #25 RXRB (ENSCAFG00020003098) #26 SLC39A7 (ENSCAFG00020003166) #27 HSD17B8 (ENSCAFG00020003175) #28 RING1 (ENSCAFG00020003221) #29 ENSCAFG00020003224 #31 RPS18 (ENSCAFG00020003254) #32 B3GALT4 (ENSCAFG00020003269) #33 WDR46 (ENSCAFG00020003271) #34 ENSCAFG00020003316 #35 RGL2 (ENSCAFG00020003330) #36 TAPBP (ENSCAFG00020003337) #37 Dog DUPLICATION Dog MODERN SPECIES 12 ENSCAFG00845015378 ENSCAFG00845015399 OR10H4D (ENSCAFG00845015413) ENSCAFG00845015428 OR10H4C (ENSCAFG00845015442) OR10H1E (ENSCAFG00845015463) OR10H5B (ENSCAFG00845015484) ENSCAFG00845015502 ENSCAFG00845015524 ENSCAFG00845015783 ENSCAFG00845016360 PGLYRP2 (ENSCAFG00845016433) RASAL3 (ENSCAFG00845016503) WIZ (ENSCAFG00845017125) AKAP8 (ENSCAFG00845017790) BRD4 (ENSCAFG00845018129) #22 EPHX3 (ENSCAFG00845018546) NOTCH3 (ENSCAFG00845018638) ILVBL (ENSCAFG00845018872) SYDE1 (ENSCAFG00845019022) OR1I1 (ENSCAFG00845019109) CASP14 (ENSCAFG00845019146) ENSCAFG00845019211 CCDC105 (ENSCAFG00845019260) SLC1A6 (ENSCAFG00845019363) OR7C19 (ENSCAFG00845019569) OR7A26 (ENSCAFG00845019591) ENSCAFG00845019620 OR7A56 (ENSCAFG00845019791) OR7A71 (ENSCAFG00845019809) ENSCAFG00845019840 Dog MODERN SPECIES 3 ENSCAFG00845016762 #7 ENSCAFG00845016831 ENSCAFG00845016861 ENSCAFG00845016990 #8 ENSCAFG00845017104 BTNL2 (ENSCAFG00845017222) #9 ENSCAFG00845017367 DLA-DRA (ENSCAFG00845017467) #10 DLA-DQA1 (ENSCAFG00845017728) #13 HLA-DQB2 (ENSCAFG00845017781) #14 TAP2 (ENSCAFG00845017879) #16 PSMB8 (ENSCAFG00845018353) #18 PSMB9 (ENSCAFG00845018485) #19 DLA-DMB (ENSCAFG00845018536) #20 DLA-DMA (ENSCAFG00845018613) #21 BRD2 (ENSCAFG00845018726) #22 DLA-DOA (ENSCAFG00845018933) #23 ENSCAFG00845019114 COL11A2 (ENSCAFG00845019587) #25 RXRB (ENSCAFG00845020447) #26 SLC39A7 (ENSCAFG00845020536) #27 HSD17B8 (ENSCAFG00845020603) #28 RING1 (ENSCAFG00845020668) #29 VPS52 (ENSCAFG00845020730) #31 RPS18 (ENSCAFG00845020845) ##32 B3GALT4 (ENSCAFG00845020962) #33 WDR46 (ENSCAFG00845021010) #34 PFDN6 (ENSCAFG00845021180) #35 RGL2 (ENSCAFG00845021267) #36 TAPBP (ENSCAFG00845021421) #37 ZBTB22 (ENSCAFG00845021534) Caniformia_b ANCESTRAL SPECIES 6 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Mustelinae ANCESTRAL SPECIES 65 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Ferret MODERN SPECIES 318 ENSMPUG00000001924 #15 ENSMPUG00000001931 #16 PSMB8 (ENSMPUG00000001933) #17 TAP1 (ENSMPUG00000001935) #18 PSMB9 (ENSMPUG00000001940) #19 HLA-DMB (ENSMPUG00000001943) #20 HLA-DMA (ENSMPUG00000001944) #21 ENSMPUG00000001954 BRD2 (ENSMPUG00000001955) #22 HLA-DOA (ENSMPUG00000001958) #23 ENSMPUG00000001959 HLA-DPA1 (ENSMPUG00000001961) #24 ENSMPUG00000001964 COL11A2 (ENSMPUG00000001968) #25 RXRB (ENSMPUG00000002273) #26 SLC39A7 (ENSMPUG00000002276) #27 RING1 (ENSMPUG00000002279) #29 VPS52 (ENSMPUG00000002300) #31 RPS18 (ENSMPUG00000002306) ##32 B3GALT4 (ENSMPUG00000018786) #33 ENSMPUG00000002317 #34 PFDN6 (ENSMPUG00000002364) #35 RGL2 (ENSMPUG00000002376) #36 TAPBP (ENSMPUG00000002383) #37 American mink DUPLICATION American mink MODERN SPECIES 58 ENSNVIG00000012069 ENSNVIG00000012064 ENSNVIG00000012057 ENSNVIG00000012037 ENSNVIG00000012034 ENSNVIG00000012029 ENSNVIG00000011997 CYP4F8 (ENSNVIG00000011913) CYP4F22 (ENSNVIG00000011878) PGLYRP2 (ENSNVIG00000011872) ENSNVIG00000011832 ENSNVIG00000011824 WIZ (ENSNVIG00000011787) AKAP8L (ENSNVIG00000011745) AKAP8 (ENSNVIG00000011718) ENSNVIG00000011695 #22 ENSNVIG00000011673 EPHX3 (ENSNVIG00000011630) NOTCH3 (ENSNVIG00000011559) ILVBL (ENSNVIG00000011526) SYDE1 (ENSNVIG00000011499) OR1I1 (ENSNVIG00000011479) CASP14 (ENSNVIG00000011472) CCDC105 (ENSNVIG00000011457) SLC1A6 (ENSNVIG00000011419) OR7C2 (ENSNVIG00000011412) ENSNVIG00000011407 ENSNVIG00000011405 American mink MODERN SPECIES 609 HLA-DOB (ENSNVIG00000004582) #15 TAP2 (ENSNVIG00000004605) #16 PSMB8 (ENSNVIG00000004658) #17 TAP1 (ENSNVIG00000004678) #18 PSMB9 (ENSNVIG00000004695) #19 HLA-DMB (ENSNVIG00000004727) #20 HLA-DMA (ENSNVIG00000004747) #21 BRD2 (ENSNVIG00000004773) #22 HLA-DOA (ENSNVIG00000004843) #23 HLA-DPA1 (ENSNVIG00000004863) #24 ENSNVIG00000004899 COL11A2 (ENSNVIG00000006062) #25 RXRB (ENSNVIG00000006480) #26 SLC39A7 (ENSNVIG00000006519) #27 HSD17B8 (ENSNVIG00000006535) #28 Ursidae ANCESTRAL SPECIES 37 ENSGT00940000164957 ENSGT00940000162484.d #9 ENSGT00940000160997 #10 ENSGT00940000161847 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00950000183198.c.a.b.b.j ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.w #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.d #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Giant Panda MODERN SPECIES 15 ENSAMEG00000024700 ENSAMEG00000002434 #8 ENSAMEG00000002462 BTNL2 (ENSAMEG00000002403) #9 HLA-DRA (ENSAMEG00000002390) #10 ENSAMEG00000002342 #11 ENSAMEG00000024677 ENSAMEG00000026802 #14 HLA-DOB (ENSAMEG00000029901) #15 TAP2 (ENSAMEG00000002044) #16 PSMB8 (ENSAMEG00000002026) #17 TAP1 (ENSAMEG00000001976) #18 PSMB9 (ENSAMEG00000001961) #19 ENSAMEG00000027435 HLA-DMB (ENSAMEG00000001952) #20 BRD2 (ENSAMEG00000001926) #22 HLA-DOA (ENSAMEG00000001908) #23 HLA-DPA1 (ENSAMEG00000001901) #24 ENSAMEG00000001900 COL11A2 (ENSAMEG00000001744) #25 RXRB (ENSAMEG00000001719) #26 SLC39A7 (ENSAMEG00000001707) #27 HSD17B8 (ENSAMEG00000001698) #28 RING1 (ENSAMEG00000001680) #29 VPS52 (ENSAMEG00000001640) #31 RPS18 (ENSAMEG00000001623) #32 B3GALT4 (ENSAMEG00000019752) #33 WDR46 (ENSAMEG00000001583) #34 PFDN6 (ENSAMEG00000001576) #35 RGL2 (ENSAMEG00000001533) #36 TAPBP (ENSAMEG00000001518) #37 Ursus ANCESTRAL SPECIES 53 ENSGT00940000162484.d #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00950000183198.c.a.b.b.j ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b.w #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512.d #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 American black bear DUPLICATION American black bear MODERN SPECIES 3208 ENSUAMG00000027235 #22 American black bear MODERN SPECIES 7213 HLA-DMB (ENSUAMG00000010123) #20 HLA-DMA (ENSUAMG00000010122) #21 BRD2 (ENSUAMG00000010121) #22 Polar bear DUPLICATION Polar bear MODERN SPECIES 291 ENSUMAG00000001172 ENSUMAG00000001184 ENSUMAG00000001197 ENSUMAG00000001207 ENSUMAG00000001217 ENSUMAG00000001240 ENSUMAG00000001258 ENSUMAG00000001272 CYP4F3 (ENSUMAG00000001302) CYP4F22 (ENSUMAG00000001342) PGLYRP2 (ENSUMAG00000001695) RASAL3 (ENSUMAG00000001780) ENSUMAG00000001868 AKAP8L (ENSUMAG00000001892) AKAP8 (ENSUMAG00000001928) ENSUMAG00000001954 #22 EPHX3 (ENSUMAG00000002156) NOTCH3 (ENSUMAG00000002388) ILVBL (ENSUMAG00000003567) OR1I1 (ENSUMAG00000003584) CASP14 (ENSUMAG00000003591) CCDC105 (ENSUMAG00000003609) SLC1A6 (ENSUMAG00000003627) Polar bear MODERN SPECIES 184 HLA-DRA (ENSUMAG00000012775) #10 ENSUMAG00000012771 #11 ENSUMAG00000012768 #13 HLA-DQB2 (ENSUMAG00000012766) #14 ENSUMAG00000012761 ENSUMAG00000012755 #11 HLA-DOB (ENSUMAG00000012747) #15 TAP2 (ENSUMAG00000012745) #16 PSMB8 (ENSUMAG00000012731) #17 TAP1 (ENSUMAG00000012701) #18 PSMB9 (ENSUMAG00000012694) #19 ENSUMAG00000012692 HLA-DMB (ENSUMAG00000012688) #20 HLA-DMA (ENSUMAG00000012683) #21 ENSUMAG00000012662 #22 ENSUMAG00000012634 #22 HLA-DOA (ENSUMAG00000012626) #23 ENSUMAG00000012616 #24 ENSUMAG00000012592 #25 RXRB (ENSUMAG00000012569) #26 SLC39A7 (ENSUMAG00000012560) #27 HSD17B8 (ENSUMAG00000012548) #28 RING1 (ENSUMAG00000012543) #29 VPS52 (ENSUMAG00000012525) #31 RPS18 (ENSUMAG00000012521) #32 WDR46 (ENSUMAG00000012375) #34 PFDN6 (ENSUMAG00000012363) #35 RGL2 (ENSUMAG00000012351) #36 TAPBP (ENSUMAG00000012349) #37 ZBTB22 (ENSUMAG00000012348) DAXX (ENSUMAG00000012343) Polar bear MODERN SPECIES 184 ENSUMAG00000012781 #9 HLA-DRA (ENSUMAG00000012775) #10 ENSUMAG00000012771 #11 ENSUMAG00000012768 #13 HLA-DQB2 (ENSUMAG00000012766) #14 ENSUMAG00000012761 ENSUMAG00000012755 #11 HLA-DOB (ENSUMAG00000012747) #15 TAP2 (ENSUMAG00000012745) #16 PSMB8 (ENSUMAG00000012731) #17 TAP1 (ENSUMAG00000012701) #18 PSMB9 (ENSUMAG00000012694) #19 ENSUMAG00000012692 HLA-DMB (ENSUMAG00000012688) #20 HLA-DMA (ENSUMAG00000012683) #21 ENSUMAG00000012662 #22 ENSUMAG00000012634 #22 HLA-DOA (ENSUMAG00000012626) #23 ENSUMAG00000012616 #24 ENSUMAG00000012592 #25 RXRB (ENSUMAG00000012569) #26 SLC39A7 (ENSUMAG00000012560) #27 HSD17B8 (ENSUMAG00000012548) #28 RING1 (ENSUMAG00000012543) #29 VPS52 (ENSUMAG00000012525) #31 RPS18 (ENSUMAG00000012521) #32 WDR46 (ENSUMAG00000012375) #34 PFDN6 (ENSUMAG00000012363) #35 RGL2 (ENSUMAG00000012351) #36 TAPBP (ENSUMAG00000012349) #37 ZBTB22 (ENSUMAG00000012348) Felidae ANCESTRAL SPECIES 5 ENSGT00940000162079 #8 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993 #12 ENSGT00940000155371.n.a.a #11 ENSGT00940000155371.n.a.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390.p ENSGT00940000162390.q ENSGT00940000159762.cc #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798.h #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Cat DUPLICATION Cat MODERN SPECIES 236 ENSFCAG00000043390 #37 ENSFCAG00000049571 DAXX (ENSFCAG00000004020) ENSFCAG00000053744 ENSFCAG00000052131 ENSFCAG00000041443 ENSFCAG00000040474 #15 ENSFCAG00000009202 #11 ENSFCAG00000045700 #16 ENSFCAG00000043821 #17 ENSFCAG00000042456 #18 ENSFCAG00000044069 #19 ENSFCAG00000050701 ENSFCAG00000045369 #20 ENSFCAG00000009442 #21 ENSFCAG00000042841 #22 ENSFCAG00000042732 #23 ENSFCAG00000044012 #24 ENSFCAG00000041258 COL11A2 (ENSFCAG00000004005) #25 ENSFCAG00000006981 #26 ENSFCAG00000006984 #27 ENSFCAG00000043560 #31 ENSFCAG00000004010 #29 ENSFCAG00000045696 #32 B3GALT4 (ENSFCAG00000004015) #33 WDR46 (ENSFCAG00000004016) #34 ENSFCAG00000046037 #35 ENSFCAG00000042019 #36 ENSFCAG00000004017 #37 ENSFCAG00000050206 Cat MODERN SPECIES 236 ENSFCAG00000037191 ENSFCAG00000045335 #7 ENSFCAG00000024834 #8 ENSFCAG00000028529 BTNL2 (ENSFCAG00000001685) #9 ENSFCAG00000029158 #10 ENSFCAG00000046253 #11 ENSFCAG00000041575 #15 ENSFCAG00000035701 #16 ENSFCAG00000023131 #17 ENSFCAG00000042806 #18 ENSFCAG00000030632 #19 ENSFCAG00000051485 ENSFCAG00000040910 #20 ENSFCAG00000041486 #21 ENSFCAG00000009696 #22 ENSFCAG00000009697 #23 ENSFCAG00000012247 #24 ENSFCAG00000041523 ENSFCAG00000047214 #25 ENSFCAG00000046454 #25 ENSFCAG00000042526 #26 ENSFCAG00000050544 ENSFCAG00000046098 #27 HSD17B8 (ENSFCAG00000006986) #28 ENSFCAG00000041942 #29 VPS52 (ENSFCAG00000004011) #31 ENSFCAG00000041843 #32 ENSFCAG00000052529 #33 ENSFCAG00000051171 #34 ENSFCAG00000028199 #35 Panthera ANCESTRAL SPECIES 7 ENSGT00940000162079 #8 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000154993.a.a #12 ENSGT00940000155371.n.a.a #11 ENSGT00940000155371.n.a.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390.p ENSGT00940000159762.cc #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798.h #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Tiger MODERN SPECIES 415 ENSPTIG00000006752 #8 ENSPTIG00000006731 BTNL2 (ENSPTIG00000006701) #9 ENSPTIG00000006461 #12 HLA-DRA (ENSPTIG00000006439) #10 ENSPTIG00000006308 #11 ENSPTIG00000006266 #11 HLA-DOB (ENSPTIG00000006225) #15 TAP2 (ENSPTIG00000006162) #16 PSMB8 (ENSPTIG00000006141) #17 TAP1 (ENSPTIG00000006078) #18 PSMB9 (ENSPTIG00000006050) #19 HLA-DMB (ENSPTIG00000006035) #20 HLA-DMA (ENSPTIG00000006011) #21 ENSPTIG00000006002 BRD2 (ENSPTIG00000005977) #22 HLA-DOA (ENSPTIG00000005964) #23 HLA-DPA1 (ENSPTIG00000005948) #24 HLA-DPB1 (ENSPTIG00000005931) COL11A2 (ENSPTIG00000005735) #25 RXRB (ENSPTIG00000005607) #26 SLC39A7 (ENSPTIG00000005581) #27 HSD17B8 (ENSPTIG00000005554) #28 RING1 (ENSPTIG00000005545) #29 VPS52 (ENSPTIG00000005504) #31 RPS18 (ENSPTIG00000005481) ##32 B3GALT4 (ENSPTIG00000005451) #33 WDR46 (ENSPTIG00000005439) #34 PFDN6 (ENSPTIG00000005409) #35 RGL2 (ENSPTIG00000005355) #36 TAPBP (ENSPTIG00000005317) #37 Panthera_a ANCESTRAL SPECIES 4 ENSGT00940000155371.n.a.a #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390.p ENSGT00940000159762.cc #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798.h #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 leopard DUPLICATION leopard MODERN SPECIES 68 ENSPPRG00000020871 ENSPPRG00000020886 ENSPPRG00000020898 ENSPPRG00000022821 ENSPPRG00000020913 ENSPPRG00000000160 CYP4F3 (ENSPPRG00000001769) ENSPPRG00000002280 ENSPPRG00000002620 CYP4F22 (ENSPPRG00000002745) ENSPPRG00000003320 RASAL3 (ENSPPRG00000004906) ENSPPRG00000006238 AKAP8L (ENSPPRG00000009539) AKAP8 (ENSPPRG00000010081) ENSPPRG00000010955 #22 ENSPPRG00000011126 EPHX3 (ENSPPRG00000012477) NOTCH3 (ENSPPRG00000014001) ILVBL (ENSPPRG00000014803) SYDE1 (ENSPPRG00000017777) CASP14 (ENSPPRG00000021751) CCDC105 (ENSPPRG00000022023) SLC1A6 (ENSPPRG00000024748) ENSPPRG00000021678 ENSPPRG00000021692 ENSPPRG00000021715 ENSPPRG00000021727 ENSPPRG00000021739 ENSPPRG00000024155 ENSPPRG00000023301 leopard MODERN SPECIES 30 HLA-DOB (ENSPPRG00000010507) #15 TAP2 (ENSPPRG00000010234) #16 PSMB8 (ENSPPRG00000010024) #17 TAP1 (ENSPPRG00000009806) #18 PSMB9 (ENSPPRG00000008776) #19 HLA-DMB (ENSPPRG00000004964) #20 HLA-DMA (ENSPPRG00000004582) #21 ENSPPRG00000003175 ENSPPRG00000003003 #22 ENSPPRG00000002715 #22 HLA-DOA (ENSPPRG00000002484) #23 HLA-DPA1 (ENSPPRG00000002267) #24 HLA-DPB1 (ENSPPRG00000002022) COL11A2 (ENSPPRG00000001194) #25 RXRB (ENSPPRG00000010222) #26 SLC39A7 (ENSPPRG00000009227) #27 HSD17B8 (ENSPPRG00000008960) #28 RING1 (ENSPPRG00000008873) #29 VPS52 (ENSPPRG00000007986) #31 RPS18 (ENSPPRG00000006936) #32 B3GALT4 (ENSPPRG00000006033) #33 WDR46 (ENSPPRG00000005881) #34 PFDN6 (ENSPPRG00000005109) #35 RGL2 (ENSPPRG00000004409) #36 leopard MODERN SPECIES 30 HLA-DOB (ENSPPRG00000010507) #15 TAP2 (ENSPPRG00000010234) #16 PSMB8 (ENSPPRG00000010024) #17 TAP1 (ENSPPRG00000009806) #18 PSMB9 (ENSPPRG00000008776) #19 HLA-DMB (ENSPPRG00000004964) #20 HLA-DMA (ENSPPRG00000004582) #21 ENSPPRG00000003175 ENSPPRG00000003003 #22 ENSPPRG00000002715 #22 HLA-DOA (ENSPPRG00000002484) #23 HLA-DPA1 (ENSPPRG00000002267) #24 HLA-DPB1 (ENSPPRG00000002022) COL11A2 (ENSPPRG00000001194) #25 RXRB (ENSPPRG00000010222) #26 SLC39A7 (ENSPPRG00000009227) #27 HSD17B8 (ENSPPRG00000008960) #28 RING1 (ENSPPRG00000008873) #29 VPS52 (ENSPPRG00000007986) #31 RPS18 (ENSPPRG00000006936) #32 B3GALT4 (ENSPPRG00000006033) #33 WDR46 (ENSPPRG00000005881) #34 PFDN6 (ENSPPRG00000005109) #35 RGL2 (ENSPPRG00000004409) #36 TAPBP (ENSPPRG00000003578) #37 lion DUPLICATION lion MODERN SPECIES 2 ENSPLOG00000001031 ENSPLOG00000001019 ENSPLOG00000001003 ENSPLOG00000000987 ENSPLOG00000000975 ENSPLOG00000000957 ENSPLOG00000000908 ENSPLOG00000000866 ENSPLOG00000000847 CYP4F22 (ENSPLOG00000000828) PGLYRP2 (ENSPLOG00000000711) RASAL3 (ENSPLOG00000000606) WIZ (ENSPLOG00000000541) AKAP8L (ENSPLOG00000000459) AKAP8 (ENSPLOG00000000489) ENSPLOG00000000417 #22 ENSPLOG00000000383 EPHX3 (ENSPLOG00000000351) NOTCH3 (ENSPLOG00000000296) ILVBL (ENSPLOG00000000240) SYDE1 (ENSPLOG00000000218) CASP14 (ENSPLOG00000000190) CCDC105 (ENSPLOG00000000174) SLC1A6 (ENSPLOG00000000144) ENSPLOG00000000117 ENSPLOG00000000103 ENSPLOG00000000099 ENSPLOG00000000090 OR7C1 (ENSPLOG00000000087) ENSPLOG00000000082 ENSPLOG00000000064 lion MODERN SPECIES 5 ENSPLOG00000006575 #11 HLA-DOB (ENSPLOG00000006603) #15 TAP2 (ENSPLOG00000006623) #16 PSMB8 (ENSPLOG00000006662) #17 TAP1 (ENSPLOG00000006688) #18 PSMB9 (ENSPLOG00000006713) #19 ENSPLOG00000006735 HLA-DMB (ENSPLOG00000006753) #20 HLA-DMA (ENSPLOG00000006786) #21 BRD2 (ENSPLOG00000006871) #22 HLA-DOA (ENSPLOG00000006926) #23 HLA-DPA1 (ENSPLOG00000006949) #24 ENSPLOG00000007166 COL11A2 (ENSPLOG00000007928) #25 RXRB (ENSPLOG00000009094) #26 SLC39A7 (ENSPLOG00000009206) #27 HSD17B8 (ENSPLOG00000009241) #28 RING1 (ENSPLOG00000009313) #29 VPS52 (ENSPLOG00000009344) #31 RPS18 (ENSPLOG00000009471) #32 B3GALT4 (ENSPLOG00000009525) #33 WDR46 (ENSPLOG00000009542) #34 PFDN6 (ENSPLOG00000009614) #35 RGL2 (ENSPLOG00000009682) #36 TAPBP (ENSPLOG00000009777) #37 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT00530000064839 ENSGT00940000162079.d #8 ENSGT00940000164957 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.c.a #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Equus ANCESTRAL SPECIES 10 ENSGT00940000155371.n.g.a #11 ENSGT00940000161821.c.a #13 ENSGT00940000154723.b.z.a #14 ENSGT00940000161821.c.b #13 ENSGT00940000154723.b.y #14 ENSGT00940000155371.n.h #11 ENSGT00940000155371.n.g.b #11 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00860000136081 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Donkey MODERN SPECIES 28 ENSEASG00005003380 #14 HLA-DQB1 (ENSEASG00005012362) #14 ENSEASG00005031301 #13 ENSEASG00005020693 #11 ENSEASG00005014836 #13 ENSEASG00005033717 #15 ENSEASG00005017377 #11 ENSEASG00005020739 #15 TAP2 (ENSEASG00005020743) #16 PSMB8 (ENSEASG00005020748) #17 TAP1 (ENSEASG00005020750) #18 PSMB9 (ENSEASG00005020754) #19 HLA-DMB (ENSEASG00005020759) #20 HLA-DMA (ENSEASG00005020764) #21 ENSEASG00005032605 BRD2 (ENSEASG00005020770) #22 HLA-DOA (ENSEASG00005020773) #23 COL11A2 (ENSEASG00005030115) #25 RXRB (ENSEASG00005020792) #26 SLC39A7 (ENSEASG00005020798) #27 RING1 (ENSEASG00005020805) #29 VPS52 (ENSEASG00005020809) #31 RPS18 (ENSEASG00005020817) #32 B3GALT4 (ENSEASG00005035058) #33 WDR46 (ENSEASG00005020823) #34 PFDN6 (ENSEASG00005035417) #35 RGL2 (ENSEASG00005020835) #36 ZBTB22 (ENSEASG00005020850) DAXX (ENSEASG00005020852) SMIM40 (ENSEASG00005020856) KIFC1 (ENSEASG00005020860) Horse DUPLICATION Horse MODERN SPECIES 13 FAM32A (ENSECAG00000017554) HSH2D (ENSECAG00000016757) TPM4 (ENSECAG00000022254) RAB8A (ENSECAG00000053880) CYP4F127P (ENSECAG00000019543) ENSECAG00000058777 ENSECAG00000046973 CYP4F119 (ENSECAG00000019949) ENSECAG00000034511 ENSECAG00000046401 CYP4F22 (ENSECAG00000012358) RASAL3 (ENSECAG00000009236) WIZ (ENSECAG00000008043) AKAP8L (ENSECAG00000023532) AKAP8 (ENSECAG00000015084) BRD4 (ENSECAG00000030438) #22 EPHX3 (ENSECAG00000018245) ENSECAG00000037674 NOTCH3 (ENSECAG00000021331) ENSECAG00000054944 ENSECAG00000058722 ILVBL (ENSECAG00000017231) SYDE1 (ENSECAG00000016064) OR1I5 (ENSECAG00000004718) CASP14 (ENSECAG00000012619) CCDC105 (ENSECAG00000008463) SLC1A6 (ENSECAG00000018959) OR7A188 (ENSECAG00000037266) ENSECAG00000047702 ENSECAG00000056254 OR5T40 (ENSECAG00000030841) Horse MODERN SPECIES 12 ENSECAG00000022072 #11 Eqca-DQA1 (ENSECAG00000024259) #13 ENSECAG00000017143 #14 ENSECAG00000009142 #13 ENSECAG00000052533 #14 ENSECAG00000020358 #11 ENSECAG00000012933 #11 HLA-DOB (ENSECAG00000020976) #15 TAP2 (ENSECAG00000007152) #16 PSMB9 (ENSECAG00000016898) #19 PSMB8 (ENSECAG00000018887) #17 TAP1 (ENSECAG00000022610) #18 HLA-DMB (ENSECAG00000021796) #20 HLA-DMA (ENSECAG00000003669) #21 ENSECAG00000042051 BRD2 (ENSECAG00000012089) #22 HLA-DOA (ENSECAG00000006603) #23 COL11A2 (ENSECAG00000029028) #25 RXRB (ENSECAG00000023041) #26 SLC39A7 (ENSECAG00000004794) #27 HSD17B8 (ENSECAG00000058465) #28 RING1 (ENSECAG00000013736) #29 VPS52 (ENSECAG00000019702) #31 B3GALT4 (ENSECAG00000052593) #33 WDR46 (ENSECAG00000016548) #34 PFDN6 (ENSECAG00000055205) #35 RGL2 (ENSECAG00000000906) #36 TAPBP (ENSECAG00000015448) #37 ZBTB22 (ENSECAG00000019536) DAXX (ENSECAG00000021055) KIFC1 (ENSECAG00000024196) Chiroptera ANCESTRAL SPECIES 3 ENSGT00940000162079.d #8 ENSGT00940000164957 ENSGT00940000162484.f #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162892 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Megabat MODERN SPECIES 3232 HLA-DMB (ENSPVAG00000012007) #20 HLA-DMA (ENSPVAG00000012008) #21 BRD2 (ENSPVAG00000012010) #22 HLA-DOA (ENSPVAG00000012013) #23 Microchiroptera ANCESTRAL SPECIES 4 ENSGT00940000162079.d #8 ENSGT00940000164957 ENSGT00940000162484.f #9 ENSGT00940000160997 #10 ENSGT00940000155371.n #11 ENSGT00940000161821.d #13 ENSGT00940000154723.b #14 ENSGT00940000162892 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Greater horseshoe bat MODERN SPECIES 21 ENSRFEG00010010130 HLA-DRA (ENSRFEG00010010177) #10 ENSRFEG00010010222 #11 ENSRFEG00010010287 #13 HLA-DQB2 (ENSRFEG00010010410) #14 ENSRFEG00010010549 #13 ENSRFEG00010010765 #14 ENSRFEG00010012374 ##30 ENSRFEG00010012490 HLA-DOB (ENSRFEG00010012534) #15 TAP2 (ENSRFEG00010012594) #16 PSMB8 (ENSRFEG00010012709) #17 TAP1 (ENSRFEG00010012779) #18 PSMB9 (ENSRFEG00010012800) #19 ENSRFEG00010012948 #21 BRD2 (ENSRFEG00010013276) #22 HLA-DOA (ENSRFEG00010013359) #23 HLA-DPA1 (ENSRFEG00010013424) #24 HLA-DPB1 (ENSRFEG00010013529) COL11A2 (ENSRFEG00010013940) #25 RXRB (ENSRFEG00010014125) #26 SLC39A7 (ENSRFEG00010014223) #27 HSD17B8 (ENSRFEG00010014277) #28 RING1 (ENSRFEG00010014424) #29 VPS52 (ENSRFEG00010014510) #31 ENSRFEG00010014573 #32 B3GALT4 (ENSRFEG00010014737) #33 WDR46 (ENSRFEG00010014756) #34 ENSRFEG00010014998 #35 RGL2 (ENSRFEG00010015178) #36 TAPBP (ENSRFEG00010015262) #37 Microbat DUPLICATION Microbat MODERN SPECIES 1217 RAB8A (ENSMLUG00000006982) ENSMLUG00000016177 ENSMLUG00000009960 ENSMLUG00000017518 ENSMLUG00000029631 ENSMLUG00000026342 ENSMLUG00000028047 ENSMLUG00000023349 CYP4F8 (ENSMLUG00000024967) CYP4F22 (ENSMLUG00000005489) PGLYRP2 (ENSMLUG00000005486) RASAL3 (ENSMLUG00000027885) WIZ (ENSMLUG00000005482) AKAP8L (ENSMLUG00000005469) ENSMLUG00000027375 ENSMLUG00000004852 #22 EPHX3 (ENSMLUG00000029171) NOTCH3 (ENSMLUG00000004827) ILVBL (ENSMLUG00000004813) SYDE1 (ENSMLUG00000004803) OR1I1 (ENSMLUG00000015963) CASP14 (ENSMLUG00000025660) CCDC105 (ENSMLUG00000014791) SLC1A6 (ENSMLUG00000009325) OR7C2 (ENSMLUG00000009312) ENSMLUG00000025485 ENSMLUG00000029596 ENSMLUG00000029177 ENSMLUG00000025146 ENSMLUG00000027873 Microbat MODERN SPECIES 697 ENSMLUG00000009919 #22 Atlantogenata ANCESTRAL SPECIES 3 ENSGT00940000162484 #9 ENSGT00940000160997 #10 ENSGT00940000155371 #11 ENSGT00940000154993 #12 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Xenarthra ANCESTRAL SPECIES 66 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000161735 ENSGT00390000017030.b.b ENSGT00950000183180.a.b Armadillo MODERN SPECIES 4056 TAP2 (ENSDNOG00000034243) #16 PSMB8 (ENSDNOG00000045248) #17 TAP1 (ENSDNOG00000024030) #18 PSMB9 (ENSDNOG00000035353) #19 HLA-DMB (ENSDNOG00000045752) #20 HLA-DMA (ENSDNOG00000002005) #21 BRD2 (ENSDNOG00000006186) #22 HLA-DOA (ENSDNOG00000030617) #23 HLA-DPA1 (ENSDNOG00000043328) #24 ENSDNOG00000045287 ENSDNOG00000037384 COL11A2 (ENSDNOG00000047004) #25 RXRB (ENSDNOG00000015431) #26 SLC39A7 (ENSDNOG00000015430) #27 RING1 (ENSDNOG00000019606) #29 ENSDNOG00000041084 VPS52 (ENSDNOG00000012056) #31 RPS18 (ENSDNOG00000012084) #32 WDR46 (ENSDNOG00000011191) #34 RGL2 (ENSDNOG00000011897) #36 ENSDNOG00000049289 KIFC1 (ENSDNOG00000016407) Sloth MODERN SPECIES 7529 BRD2 (ENSCHOG00000006027) #22 Afrotheria ANCESTRAL SPECIES 83 ENSGT00940000162484 #9 ENSGT00940000160997.m #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 Afrotheria_a ANCESTRAL SPECIES 84 ENSGT00940000162484 #9 ENSGT00940000160997.m #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498.r #24 ENSGT00940000162390 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00390000012691.d ##32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 Hyrax MODERN SPECIES 8416 BRD2 (ENSPCAG00000009077) #22 HLA-DOA (ENSPCAG00000009144) #23 Elephant DUPLICATION Elephant MODERN SPECIES 270 ENSLAFG00000030136 ENSLAFG00000027993 ENSLAFG00000031874 ENSLAFG00000026585 ENSLAFG00000030034 ENSLAFG00000003300 ENSLAFG00000029003 ENSLAFG00000029960 ENSLAFG00000030083 CYP4F22 (ENSLAFG00000023092) ENSLAFG00000008772 RASAL3 (ENSLAFG00000020948) WIZ (ENSLAFG00000004604) AKAP8L (ENSLAFG00000004599) AKAP8 (ENSLAFG00000026120) ENSLAFG00000030134 #22 EPHX3 (ENSLAFG00000000695) NOTCH3 (ENSLAFG00000031040) ENSLAFG00000031179 ENSLAFG00000025846 ILVBL (ENSLAFG00000003259) ENSLAFG00000030501 OR1I1 (ENSLAFG00000032391) CASP14 (ENSLAFG00000031913) CCDC105 (ENSLAFG00000000999) SLC1A6 (ENSLAFG00000011311) ENSLAFG00000032506 ENSLAFG00000002220 ENSLAFG00000027481 ENSLAFG00000026701 ENSLAFG00000029250 Elephant MODERN SPECIES 14 BTNL2 (ENSLAFG00000001025) #9 ENSLAFG00000001026 #10 ENSLAFG00000031292 #13 ENSLAFG00000018482 #14 ENSLAFG00000030016 #14 ENSLAFG00000029261 #14 HLA-DOB (ENSLAFG00000004052) #15 TAP2 (ENSLAFG00000028298) #16 PSMB8 (ENSLAFG00000003213) #17 TAP1 (ENSLAFG00000003214) #18 PSMB9 (ENSLAFG00000025736) #19 HLA-DMB (ENSLAFG00000004768) #20 HLA-DMA (ENSLAFG00000005738) #21 BRD2 (ENSLAFG00000016104) #22 HLA-DOA (ENSLAFG00000014863) #23 ENSLAFG00000029575 COL11A2 (ENSLAFG00000009548) #25 RXRB (ENSLAFG00000002141) #26 SLC39A7 (ENSLAFG00000002138) #27 HSD17B8 (ENSLAFG00000030087) #28 RING1 (ENSLAFG00000021706) #29 VPS52 (ENSLAFG00000004472) #31 ENSLAFG00000032173 ##32 B3GALT4 (ENSLAFG00000025898) #33 WDR46 (ENSLAFG00000012958) #34 PFDN6 (ENSLAFG00000012967) #35 RGL2 (ENSLAFG00000022913) #36 TAPBP (ENSLAFG00000032520) #37 ZBTB22 (ENSLAFG00000018510) Tenrec DUPLICATION Tenrec MODERN SPECIES 797 ENSETEG00000007267 #22 EPHX3 (ENSETEG00000007262) Tenrec MODERN SPECIES 8430 BRD2 (ENSETEG00000008209) #22 Marsupialia ANCESTRAL SPECIES 2 ENSGT00940000160997 #10 ENSGT00940000154723.a.a ##14 ENSGT00940000161847.k ENSGT00950000183127.b.c.a ENSGT00980000198488.n.y.b.a ##30 ENSGT00940000160499.l #16 ENSGT01100000263562.b.a.a.c.b ENSGT00940000160499.k #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00980000198488.n.y.a.a ##30 ENSGT00980000198488.n.y.b.b ##30 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Marsupialia_b ANCESTRAL SPECIES 1 ENSGT00920000149187 ENSGT00940000162382 ENSGT00940000155779.a.b ENSGT00940000162975 ENSGT00390000008726.h.b ENSGT00390000014107.a.b ENSGT00890000139566 ENSGT00940000162079.g.b #8 ENSGT00950000183127.b.c.b ENSGT00940000162498 #24 ENSGT00940000164042.b ENSGT00940000160997 #10 ENSGT00980000198488.n.y.b.b ##30 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Tasmanian devil MODERN SPECIES 3 CYP21A2 (ENSSHAG00000009476) TNXB (ENSSHAG00000009524) ATF6B (ENSSHAG00000010010) FKBPL (ENSSHAG00000021705) ENSSHAG00000024676 PPT2 (ENSSHAG00000010290) EGFL8 (ENSSHAG00000010328) AGPAT1 (ENSSHAG00000010364) RNF5 (ENSSHAG00000030853) AGER (ENSSHAG00000022656) PBX2 (ENSSHAG00000030132) ENSSHAG00000003189 #10 ENSSHAG00000001982 ##30 HLA-DMA (ENSSHAG00000003851) #21 HLA-DMB (ENSSHAG00000003762) #20 BRD2 (ENSSHAG00000001150) #22 COL11A2 (ENSSHAG00000005537) #25 RXRB (ENSSHAG00000006089) #26 ENSSHAG00000022792 #28 ENSSHAG00000030383 ##32 ENSSHAG00000023999 #35 RGL2 (ENSSHAG00000007263) #36 TAPBP (ENSSHAG00000025584) #37 ZBTB22 (ENSSHAG00000007426) DAXX (ENSSHAG00000007459) PHF1 (ENSSHAG00000021541) ENSSHAG00000001198 CUTA (ENSSHAG00000002227) SYNGAP1 (ENSSHAG00000002507) ZBTB9 (ENSSHAG00000027893) BAK1 (ENSSHAG00000028586) Diprotodontia ANCESTRAL SPECIES 44 ENSGT00980000198488.n.y.b.b ##30 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160076 #27 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT01100000263519.A.b.a.b ENSGT00390000008815 #31 ENSGT00390000012691.c.b #32 ENSGT00940000161798 #33 ENSGT00390000007075 #34 ENSGT00390000010512 #35 ENSGT00940000161403 #36 ENSGT00940000159200 #37 ENSGT00940000160991 ENSGT00390000009448 Wallaby MODERN SPECIES 10052 ENSMEUG00000015257 #22 Diprotodontia_a ANCESTRAL SPECIES 101 ENSGT00980000198488.n.y.b.b ##30 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000159762 #25 ENSGT00940000159208.B #26 ENSGT00940000160668 #28 ENSGT00940000161022 #29 ENSGT01100000263519.A.b.a.b koala DUPLICATION koala MODERN SPECIES 190 ENSPCIG00000035109 ENSPCIG00000034279 ENSPCIG00000004796 ENSPCIG00000004785 ENSPCIG00000032799 ENSPCIG00000005143 ENSPCIG00000024857 CYP4F22 (ENSPCIG00000004755) ENSPCIG00000004728 ENSPCIG00000004722 RASAL3 (ENSPCIG00000004702) ENSPCIG00000004692 ENSPCIG00000004684 AKAP8L (ENSPCIG00000004037) AKAP8 (ENSPCIG00000004006) ENSPCIG00000003344 #22 ENSPCIG00000034860 EPHX3 (ENSPCIG00000003286) NOTCH3 (ENSPCIG00000026508) ENSPCIG00000026509 ILVBL (ENSPCIG00000003271) SYDE1 (ENSPCIG00000003261) OR1I1 (ENSPCIG00000003241) CASP14 (ENSPCIG00000003224) ENSPCIG00000003213 CCDC105 (ENSPCIG00000003198) SLC1A6 (ENSPCIG00000003178) ENSPCIG00000011974 ENSPCIG00000031404 ENSPCIG00000032437 ENSPCIG00000027489 koala MODERN SPECIES 254 ENSPCIG00000008629 #18 ENSPCIG00000009007 #16 ENSPCIG00000001719 ##30 ENSPCIG00000001804 ENSPCIG00000001868 #17 ENSPCIG00000005091 #18 ENSPCIG00000034822 ##30 ENSPCIG00000001943 ENSPCIG00000001956 #16 ENSPCIG00000008486 #17 ENSPCIG00000034298 #18 PSMB9 (ENSPCIG00000022552) #19 ENSPCIG00000036230 ##30 Phci-DMB (ENSPCIG00000019944) #20 HLA-DMA (ENSPCIG00000001972) #21 BRD2 (ENSPCIG00000002017) #22 COL11A2 (ENSPCIG00000031838) #25 RXRB (ENSPCIG00000002153) #26 ENSPCIG00000002180 HSD17B8 (ENSPCIG00000002203) #28 RING1 (ENSPCIG00000002578) #29 ENSPCIG00000036920 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 580 ENSVURG00010024921 ENSVURG00010024920 ENSVURG00010024919 ENSVURG00010024918 ENSVURG00010024917 ENSVURG00010024916 ENSVURG00010024909 ENSVURG00010024897 CYP4F22 (ENSVURG00010024894) PGLYRP2 (ENSVURG00010024892) RASAL3 (ENSVURG00010024888) WIZ (ENSVURG00010024884) AKAP8L (ENSVURG00010024874) AKAP8 (ENSVURG00010024869) ENSVURG00010024866 #22 ENSVURG00010024864 EPHX3 (ENSVURG00010024863) ENSVURG00010024861 NOTCH3 (ENSVURG00010024859) ENSVURG00010024857 ILVBL (ENSVURG00010024855) SYDE1 (ENSVURG00010024852) OR1I1 (ENSVURG00010024850) CASP14 (ENSVURG00010024849) ENSVURG00010024848 SLC1A6 (ENSVURG00010024846) ENSVURG00010024843 ENSVURG00010024842 ENSVURG00010024841 ENSVURG00010024840 Common wonbat MODERN SPECIES 1047 ENSVURG00010006216 #16 ENSVURG00010006448 ##30 ENSVURG00010006462 #16 ENSVURG00010006484 ENSVURG00010006738 ##30 PSMB8 (ENSVURG00010012199) #17 ENSVURG00010012252 #18 ENSVURG00010012508 #19 ENSVURG00010012584 ##30 ENSVURG00010014250 OSCAR (ENSVURG00010014253) ENSVURG00010014277 #16 ENSVURG00010014320 #18 HLA-DMB (ENSVURG00010014847) #20 HLA-DMA (ENSVURG00010014861) #21 BRD2 (ENSVURG00010014869) #22 ENSVURG00010014883 #25 RXRB (ENSVURG00010014890) #26 ENSVURG00010014948 RING1 (ENSVURG00010014982) #29 VPS52 (ENSVURG00010015001) #31 RPS18 (ENSVURG00010015031) ##32 B3GALT4 (ENSVURG00010015041) #33 WDR46 (ENSVURG00010015047) #34 PFDN6 (ENSVURG00010015063) #35 RGL2 (ENSVURG00010015079) #36 ENSVURG00010015107 #37 ZBTB22 (ENSVURG00010015135) DAXX (ENSVURG00010015143) SMIM40 (ENSVURG00010015158) ENSVURG00010015167 Opossum DUPLICATION Opossum MODERN SPECIES 2 ENSMODG00000014822 ENSMODG00000023817 ENSMODG00000039842 ENSMODG00000047513 ENSMODG00000029440 CYP4F8 (ENSMODG00000014754) ENSMODG00000014717 ENSMODG00000023822 ENSMODG00000014674 ENSMODG00000014425 CYP4F22 (ENSMODG00000014622) PGLYRP2 (ENSMODG00000014610) WIZ (ENSMODG00000014589) AKAP8L (ENSMODG00000014581) AKAP8 (ENSMODG00000014573) ENSMODG00000040284 #22 ENSMODG00000014558 EPHX3 (ENSMODG00000041517) NOTCH3 (ENSMODG00000014540) ENSMODG00000050252 ILVBL (ENSMODG00000014519) SYDE1 (ENSMODG00000014508) ENSMODG00000048274 OR1I1 (ENSMODG00000014497) CASP14 (ENSMODG00000039253) ENSMODG00000014485 SLC1A6 (ENSMODG00000014481) ENSMODG00000014469 ENSMODG00000036910 ENSMODG00000044017 ENSMODG00000039698 Opossum MODERN SPECIES 1 OSCAR (ENSMODG00000010599) ENSMODG00000043833 #16 MHC-I (ENSMODG00000042965) ##30 ENSMODG00000047889 #13 ENSMODG00000010560 #16 ENSMODG00000044001 ##30 ENSMODG00000038708 ##30 PSMB8 (ENSMODG00000014366) #17 TAP1 (ENSMODG00000014352) #18 PSMB9 (ENSMODG00000046870) #19 ENSMODG00000050241 ##30 MODO-UK (ENSMODG00000014336) ##30 ENSMODG00000039629 ##30 HLA-DMB (ENSMODG00000014310) #20 ENSMODG00000029544 #21 BRD2 (ENSMODG00000014295) #22 RXRB (ENSMODG00000014249) #26 ENSMODG00000014239 HSD17B8 (ENSMODG00000014232) #28 RING1 (ENSMODG00000014169) #29 ENSMODG00000044597 ENSMODG00000029559 RPS18 (ENSMODG00000014210) #32 B3GALT4 (ENSMODG00000023738) #33 WDR46 (ENSMODG00000014202) #34 PFDN6 (ENSMODG00000014191) #35 RGL2 (ENSMODG00000014185) #36 TAPBP (ENSMODG00000014159) #37 ZBTB22 (ENSMODG00000014152) DAXX (ENSMODG00000014146) SMIM40 (ENSMODG00000041725)