Glires ANCESTRAL SPECIES 5 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000155371 #10 ENSGT00940000154993 #9 ENSGT00940000162892 ENSGT00940000154723.b #14 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 ENSGT00940000161403 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 ENSGT00940000161403 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000160997 #8 ENSGT00940000154993.k.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.l ##9 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 ENSGT00940000161403 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 ENSGT00940000161403 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 ENSGT00940000161403 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 ENSGT00940000161403 Cricetidae ANCESTRAL SPECIES 9 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b ##31 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT01030000234972 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.l ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a ##31 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Northern American deer mouse MODERN SPECIES 13 Btnl2 (ENSPEMG00000007431) #7 H2-Ea (ENSPEMG00000008261) #8 H2-Eb2 (ENSPEMG00000006456) #9 H2-Eb1 (ENSPEMG00000002889) #10 ENSPEMG00000012679 #11 ENSPEMG00000015401 #12 ENSPEMG00000007095 #13 ENSPEMG00000012719 #14 H2-Ob (ENSPEMG00000001796) #15 Tap2 (ENSPEMG00000010503) #16 Psmb8 (ENSPEMG00000012170) #17 Tap1 (ENSPEMG00000012461) #18 Psmb9 (ENSPEMG00000009609) #19 ENSPEMG00000018040 #20 H2-DMa (ENSPEMG00000013203) #21 Brd2 (ENSPEMG00000018138) #22 H2-Oa (ENSPEMG00000011158) #23 ENSPEMG00000015442 #24 ENSPEMG00000026148 #25 Col11a2 (ENSPEMG00000016918) #26 Rxrb (ENSPEMG00000018454) #27 Slc39a7 (ENSPEMG00000003403) #28 Hsd17b8 (ENSPEMG00000012925) #29 Ring1 (ENSPEMG00000019238) #30 ENSPEMG00000024622 #31 ENSPEMG00000030975 #32 ENSPEMG00000030319 #33 Rps18 (ENSPEMG00000005058) #34 B3galt4 (ENSPEMG00000004762) #35 Wdr46 (ENSPEMG00000019179) #36 Pfdn6 (ENSPEMG00000005228) #37 Prairie vole MODERN SPECIES 352 ENSMOCG00000011431 Btnl1 (ENSMOCG00000018715) Btnl2 (ENSMOCG00000014437) #7 H2-Ea (ENSMOCG00000008786) #8 ENSMOCG00000019721 #10 ENSMOCG00000017941 ##9 ENSMOCG00000013355 #13 H2-Ab1 (ENSMOCG00000008439) #14 H2-Ob (ENSMOCG00000008562) #15 Tap2 (ENSMOCG00000022898) #16 Psmb8 (ENSMOCG00000014719) #17 Tap1 (ENSMOCG00000019762) #18 Psmb9 (ENSMOCG00000005369) #19 ENSMOCG00000022309 #20 H2-DMa (ENSMOCG00000002744) #21 Brd2 (ENSMOCG00000016368) #22 H2-Oa (ENSMOCG00000020236) #23 ENSMOCG00000010963 #24 Col11a2 (ENSMOCG00000016852) #26 Rxrb (ENSMOCG00000000374) #27 Slc39a7 (ENSMOCG00000019993) #28 Hsd17b8 (ENSMOCG00000001695) #29 Ring1 (ENSMOCG00000020973) #30 ENSMOCG00000014473 ##31 Vps52 (ENSMOCG00000004229) Rps18 (ENSMOCG00000018024) #34 B3galt4 (ENSMOCG00000011979) #35 Wdr46 (ENSMOCG00000014412) #36 Pfdn6 (ENSMOCG00000022424) #37 Rgl2 (ENSMOCG00000022698) Tapbp (ENSMOCG00000010072) Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000154993.k.b.b #9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 Chinese hamster chok1gshd MODERN SPECIES 303 ENSCGRG00001001955 #10 Btnl1 (ENSCGRG00001017970) Btnl2 (ENSCGRG00001016923) #7 H2-Ea (ENSCGRG00001015369) #8 ENSCGRG00001015049 #10 ENSCGRG00001021279 ##9 H2-Aa (ENSCGRG00001020824) #13 H2-Ab1 (ENSCGRG00001020630) #14 H2-Ob (ENSCGRG00001020078) #15 ENSCGRG00001019448 Psmb8 (ENSCGRG00001018009) #17 Tap1 (ENSCGRG00001009114) #18 Psmb9 (ENSCGRG00001007415) #19 ENSCGRG00001001555 #20 H2-DMa (ENSCGRG00001000682) #21 Brd2 (ENSCGRG00001018148) #22 H2-Oa (ENSCGRG00001013616) #23 ENSCGRG00001009189 #24 ENSCGRG00001007476 #25 Col11a2 (ENSCGRG00001016209) #26 Rxrb (ENSCGRG00001000192) #27 Slc39a7 (ENSCGRG00001022298) #28 Hsd17b8 (ENSCGRG00001003834) #29 Ring1 (ENSCGRG00001001992) #30 ENSCGRG00001000484 ##31 ENSCGRG00001000045 ENSCGRG00001001839 ENSCGRG00001020054 ##31 ENSCGRG00001018024 ##31 ENSCGRG00001013282 ##31 ENSCGRG00001018149 ##31 Golden Hamster MODERN SPECIES 856 Notch4 (ENSMAUG00000015895) ENSMAUG00000009410 ENSMAUG00000015609 Btnl1 (ENSMAUG00000016817) Btnl2 (ENSMAUG00000003530) #7 H2-Eb2 (ENSMAUG00000018151) #9 H2-Aa (ENSMAUG00000003363) #13 H2-Ab1 (ENSMAUG00000020395) #14 H2-Ob (ENSMAUG00000007698) #15 Tap2 (ENSMAUG00000015081) #16 Psmb8 (ENSMAUG00000003396) #17 Tap1 (ENSMAUG00000017718) #18 Psmb9 (ENSMAUG00000007584) #19 ENSMAUG00000008923 #20 H2-DMa (ENSMAUG00000000861) #21 Brd2 (ENSMAUG00000006799) #22 Col11a2 (ENSMAUG00000021348) #26 Rxrb (ENSMAUG00000009043) #27 Slc39a7 (ENSMAUG00000015255) #28 Hsd17b8 (ENSMAUG00000013407) #29 Ring1 (ENSMAUG00000012254) #30 Murinae ANCESTRAL SPECIES 18 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Mus ANCESTRAL SPECIES 16 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c #31 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Mus_A ANCESTRAL SPECIES 10 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #31 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Mus_B ANCESTRAL SPECIES 9 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a #31 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512.`b #37 ENSGT00940000161403 ENSGT00940000159200 Mouse MODERN SPECIES 8 Btnl1 (ENSMUSG00000062638) Btnl2 (ENSMUSG00000024340) #7 H2-Ea (ENSMUSG00000036322) #8 H2-Eb2 (ENSMUSG00000067341) #9 H2-Eb1 (ENSMUSG00000060586) #10 H2-Aa (ENSMUSG00000036594) #13 H2-Ab1 (ENSMUSG00000073421) #14 H2-Ob (ENSMUSG00000041538) #15 Tap2 (ENSMUSG00000024339) #16 Psmb8 (ENSMUSG00000024338) #17 Tap1 (ENSMUSG00000037321) #18 Psmb9 (ENSMUSG00000096727) #19 H2-DMb1 (ENSMUSG00000079547) #20 H2-DMb2 (ENSMUSG00000037548) #20 H2-DMa (ENSMUSG00000037649) #21 Brd2 (ENSMUSG00000024335) #22 H2-Oa (ENSMUSG00000024334) #23 Col11a2 (ENSMUSG00000024330) #26 Rxrb (ENSMUSG00000039656) #27 Slc39a7 (ENSMUSG00000024327) #28 Hsd17b8 (ENSMUSG00000073422) #29 Ring1 (ENSMUSG00000024325) #30 H2-K1 (ENSMUSG00000061232) #31 Vps52 (ENSMUSG00000024319) Rps18 (ENSMUSG00000008668) #34 B3galt4 (ENSMUSG00000067370) #35 Wdr46 (ENSMUSG00000024312) #36 Pfdn6 (ENSMUSG00000024309) #37 Rgl2 (ENSMUSG00000041354) Zbtb22 (ENSMUSG00000051390) Tapbp (ENSMUSG00000024308) Mus_C ANCESTRAL SPECIES 9 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b.b #9 ENSGT00940000155371 #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381.h #20 ENSGT00940000160381.g #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a #31 ENSGT00390000008815 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512.`b #37 ENSGT00940000161403 ENSGT00940000159200 Steppe mouse MODERN SPECIES 2564 Btnl1 (ENSMSIG00000010748) Btnl2 (ENSMSIG00000010760) #7 H2-Ea (ENSMSIG00000010776) #8 H2-Eb2 (ENSMSIG00000010788) #9 ENSMSIG00000010807 #10 H2-Aa (ENSMSIG00000010823) #13 ENSMSIG00000010843 #14 H2-Ob (ENSMSIG00000010868) #15 Tap2 (ENSMSIG00000010919) #16 ENSMSIG00000010972 Psmb8 (ENSMSIG00000010986) #17 ENSMSIG00000011012 #18 Psmb9 (ENSMSIG00000011042) #19 H2-DMb1 (ENSMSIG00000011055) #20 H2-DMa (ENSMSIG00000011088) #21 Brd2 (ENSMSIG00000011118) #22 H2-Oa (ENSMSIG00000011198) #23 ENSMSIG00000011214 #24 Col11a2 (ENSMSIG00000011347) #26 Rxrb (ENSMSIG00000012091) #27 Slc39a7 (ENSMSIG00000012137) #28 ENSMSIG00000012153 #29 Ring1 (ENSMSIG00000012190) #30 ENSMSIG00000012243 ENSMSIG00000012249 #31 Vps52 (ENSMSIG00000012295) Rps18 (ENSMSIG00000012382) #34 B3galt4 (ENSMSIG00000012406) #35 Wdr46 (ENSMSIG00000012419) #36 Pfdn6 (ENSMSIG00000012469) #37 Rgl2 (ENSMSIG00000012505) spretus MODERN SPECIES 8 Btnl1 (MGP_SPRETEiJ_G0022363) Btnl2 (MGP_SPRETEiJ_G0022362) #7 H2-Eb2 (MGP_SPRETEiJ_G0022361) #9 MGP_SPRETEiJ_G0022360 #10 H2-Aa (MGP_SPRETEiJ_G0022359) #13 H2-Ab1 (MGP_SPRETEiJ_G0022358) #14 H2-Ob (MGP_SPRETEiJ_G0022357) #15 MGP_SPRETEiJ_G0022356 Tap2 (MGP_SPRETEiJ_G0022355) #16 Psmb8 (MGP_SPRETEiJ_G0022354) #17 Tap1 (MGP_SPRETEiJ_G0022353) #18 Psmb9 (MGP_SPRETEiJ_G0022352) #19 H2-DMb2 (MGP_SPRETEiJ_G0022351) #20 MGP_SPRETEiJ_G0022350 #20 H2-DMa (MGP_SPRETEiJ_G0022349) #21 Brd2 (MGP_SPRETEiJ_G0022348) #22 H2-Oa (MGP_SPRETEiJ_G0022347) #23 Col11a2 (MGP_SPRETEiJ_G0022346) #26 Rxrb (MGP_SPRETEiJ_G0022345) #27 Slc39a7 (MGP_SPRETEiJ_G0022344) #28 Hsd17b8 (MGP_SPRETEiJ_G0022343) #29 Ring1 (MGP_SPRETEiJ_G0022342) #30 MGP_SPRETEiJ_G0022340 ##34 B3galt4 (MGP_SPRETEiJ_G0022339) #35 Wdr46 (MGP_SPRETEiJ_G0022338) #36 Pfdn6 (MGP_SPRETEiJ_G0022337) #37 Rgl2 (MGP_SPRETEiJ_G0022336) Zbtb22 (MGP_SPRETEiJ_G0022335) Tapbp (MGP_SPRETEiJ_G0022334) Daxx (MGP_SPRETEiJ_G0022333) Cd320 (MGP_SPRETEiJ_G0022332) Ryukyu mouse MODERN SPECIES 8 Btnl1 (MGP_CAROLIEiJ_G0021457) Btnl2 (MGP_CAROLIEiJ_G0021456) #7 H2-Eb2 (MGP_CAROLIEiJ_G0021455) #9 MGP_CAROLIEiJ_G0021454 #10 H2-Aa (MGP_CAROLIEiJ_G0021453) #13 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #14 H2-Ob (MGP_CAROLIEiJ_G0021451) #15 MGP_CAROLIEiJ_G0021450 Tap2 (MGP_CAROLIEiJ_G0021449) #16 Psmb8 (MGP_CAROLIEiJ_G0021448) #17 Tap1 (MGP_CAROLIEiJ_G0021447) #18 Psmb9 (MGP_CAROLIEiJ_G0021446) #19 MGP_CAROLIEiJ_G0021445 #20 MGP_CAROLIEiJ_G0021444 #20 H2-DMa (MGP_CAROLIEiJ_G0021443) #21 Brd2 (MGP_CAROLIEiJ_G0021442) #22 H2-Oa (MGP_CAROLIEiJ_G0021441) #23 Col11a2 (MGP_CAROLIEiJ_G0021440) #26 Rxrb (MGP_CAROLIEiJ_G0021439) #27 Slc39a7 (MGP_CAROLIEiJ_G0021438) #28 Hsd17b8 (MGP_CAROLIEiJ_G0021437) #29 Ring1 (MGP_CAROLIEiJ_G0021436) #30 MGP_CAROLIEiJ_G0021435 #31 MGP_CAROLIEiJ_G0021434 #31 MGP_CAROLIEiJ_G0021432 MGP_CAROLIEiJ_G0021431 MGP_CAROLIEiJ_G0021430 ##31 MGP_CAROLIEiJ_G0021429 ##31 Rps18 (MGP_CAROLIEiJ_G0021428) #34 B3galt4 (MGP_CAROLIEiJ_G0021427) #35 Wdr46 (MGP_CAROLIEiJ_G0021426) #36 Shrew mouse MODERN SPECIES 9 MGP_PahariEiJ_G0020455 Tsbp1 (MGP_PahariEiJ_G0020454) Btnl1 (MGP_PahariEiJ_G0020453) Btnl2 (MGP_PahariEiJ_G0020452) #7 H2-Eb2 (MGP_PahariEiJ_G0020451) #9 MGP_PahariEiJ_G0020450 #10 H2-Aa (MGP_PahariEiJ_G0020449) #13 H2-Ab1 (MGP_PahariEiJ_G0020448) #14 H2-Ob (MGP_PahariEiJ_G0020447) #15 MGP_PahariEiJ_G0020446 Tap2 (MGP_PahariEiJ_G0020445) #16 Psmb8 (MGP_PahariEiJ_G0020444) #17 Tap1 (MGP_PahariEiJ_G0020443) #18 Psmb9 (MGP_PahariEiJ_G0020442) #19 H2-DMa (MGP_PahariEiJ_G0020441) #21 Brd2 (MGP_PahariEiJ_G0020440) #22 H2-Oa (MGP_PahariEiJ_G0020439) #23 Col11a2 (MGP_PahariEiJ_G0020438) #26 Rxrb (MGP_PahariEiJ_G0020437) #27 Slc39a7 (MGP_PahariEiJ_G0020436) #28 Hsd17b8 (MGP_PahariEiJ_G0020435) #29 Ring1 (MGP_PahariEiJ_G0020434) #30 MGP_PahariEiJ_G0020433 #34 B3galt4 (MGP_PahariEiJ_G0020432) #35 Wdr46 (MGP_PahariEiJ_G0020431) #36 Pfdn6 (MGP_PahariEiJ_G0020430) #37 Rgl2 (MGP_PahariEiJ_G0020429) Zbtb22 (MGP_PahariEiJ_G0020428) Tapbp (MGP_PahariEiJ_G0020427) Daxx (MGP_PahariEiJ_G0020426) Cd320 (MGP_PahariEiJ_G0020425) Rat MODERN SPECIES 12 Tsbp1 (ENSRNOG00000039398) Btnl3 (ENSRNOG00000039396) Btnl2 (ENSRNOG00000028541) #7 RT1-Da (ENSRNOG00000032844) #8 RT1-Db2 (ENSRNOG00000030431) #10 RT1-Db1 (ENSRNOG00000033215) #10 RT1-Ba (ENSRNOG00000000451) #13 RT1-Bb (ENSRNOG00000032708) #14 RT1-DOb (ENSRNOG00000000454) #15 Tap2 (ENSRNOG00000000455) #16 Psmb8 (ENSRNOG00000000456) #17 Tap1 (ENSRNOG00000000457) #18 Psmb9 (ENSRNOG00000000459) #19 RT1-DMb (ENSRNOG00000049491) #20 RT1-DMa (ENSRNOG00000066773) #21 Brd2 (ENSRNOG00000000461) #22 RT1-DOa (ENSRNOG00000026762) #23 RT1-Ha (ENSRNOG00000045908) #24 RT1-Hb-ps1 (ENSRNOG00000061936) #25 Col11a2 (ENSRNOG00000000463) #26 Rxrb (ENSRNOG00000000464) #27 Slc39a7 (ENSRNOG00000000465) #28 Hsd17b8 (ENSRNOG00000000466) #29 Ring1 (ENSRNOG00000000467) #30 Vps52 (ENSRNOG00000000470) ENSRNOG00000062487 ENSRNOG00000069209 B3galt4 (ENSRNOG00000000471) #35 Wdr46 (ENSRNOG00000031171) #36 Pfdn6 (ENSRNOG00000000473) #37 Rgl2 (ENSRNOG00000000474) Upper Galilee mountains blind mole rat MODERN SPECIES 369 Psmb8 (ENSNGAG00000001376) #17 Tap1 (ENSNGAG00000012692) #18 Psmb9 (ENSNGAG00000022287) #19 ENSNGAG00000015143 #20 H2-DMa (ENSNGAG00000022770) #21 Brd2 (ENSNGAG00000022459) #22 H2-Oa (ENSNGAG00000015259) #23 ENSNGAG00000014641 #25 Lesser Egyptian jerboa MODERN SPECIES 41 H2-Ob (ENSJJAG00000022338) #15 ENSJJAG00000003836 Tap2 (ENSJJAG00000004300) #16 Psmb8 (ENSJJAG00000023598) #17 Tap1 (ENSJJAG00000022861) #18 Psmb9 (ENSJJAG00000022884) #19 ENSJJAG00000004664 #20 H2-DMa (ENSJJAG00000012555) #21 Brd2 (ENSJJAG00000010183) #22 H2-Oa (ENSJJAG00000000542) #23 ENSJJAG00000023713 #25 Col11a2 (ENSJJAG00000010448) #26 Rxrb (ENSJJAG00000004710) #27 Slc39a7 (ENSJJAG00000014121) #28 Hsd17b8 (ENSJJAG00000021794) #29 Ring1 (ENSJJAG00000022246) #30 Vps52 (ENSJJAG00000020884) Rps18 (ENSJJAG00000018899) #34 Wdr46 (ENSJJAG00000021960) #36 Pfdn6 (ENSJJAG00000009874) #37 ENSJJAG00000023644 ENSJJAG00000021860 ENSJJAG00000000854 Daxx (ENSJJAG00000022212) Kangaroo rat MODERN SPECIES 519 Gpsm3 (ENSDORG00000025609) ENSDORG00000009936 ENSDORG00000028297 H2-Ea (ENSDORG00000014782) #8 ENSDORG00000024908 #10 ENSDORG00000029602 ##9 ENSDORG00000006991 ##9 ENSDORG00000011904 #10 ENSDORG00000008310 #15 Tap2 (ENSDORG00000008311) #16 Psmb8 (ENSDORG00000028592) #17 Tap1 (ENSDORG00000029698) #18 Psmb9 (ENSDORG00000006231) #19 ENSDORG00000005172 #20 ENSDORG00000005173 #21 Brd2 (ENSDORG00000004497) #22 H2-Oa (ENSDORG00000004499) #23 ENSDORG00000004500 #24 ENSDORG00000024606 #25 Col11a2 (ENSDORG00000013815) #26 Rxrb (ENSDORG00000013816) #27 Slc39a7 (ENSDORG00000013818) #28 Hsd17b8 (ENSDORG00000013819) #29 Ring1 (ENSDORG00000013820) #30 Vps52 (ENSDORG00000013822) ENSDORG00000013825 #34 B3galt4 (ENSDORG00000013826) #35 Wdr46 (ENSDORG00000013827) #36 ENSDORG00000013828 #37 Rgl2 (ENSDORG00000013829) Tapbp (ENSDORG00000013835) Rodentia_A ANCESTRAL SPECIES 8 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000162892 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00940000162450 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00390000012691.c.b.p #34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00980000198621 ENSGT00940000162450 ENSGT00940000162079 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000155371 #10 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d.o ##34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Long-tailed chinchilla MODERN SPECIES 144 ENSCLAG00000011744 ENSCLAG00000015677 BTNL2 (ENSCLAG00000007142) #7 HLA-DRA (ENSCLAG00000009768) #8 ENSCLAG00000013098 #10 ENSCLAG00000016042 #10 ENSCLAG00000009507 #13 HLA-DQB2 (ENSCLAG00000011869) #14 HLA-DOB (ENSCLAG00000011735) #15 TAP2 (ENSCLAG00000012654) #16 PSMB8 (ENSCLAG00000006990) #17 TAP1 (ENSCLAG00000008052) #18 PSMB9 (ENSCLAG00000007918) #19 HLA-DMB (ENSCLAG00000008468) #20 HLA-DMA (ENSCLAG00000014679) #21 BRD2 (ENSCLAG00000009750) #22 HLA-DOA (ENSCLAG00000011531) #23 HLA-DPB1 (ENSCLAG00000013126) #25 HLA-DPA1 (ENSCLAG00000010668) #24 COL11A2 (ENSCLAG00000007783) #26 RXRB (ENSCLAG00000013699) #27 SLC39A7 (ENSCLAG00000014475) #28 HSD17B8 (ENSCLAG00000007885) #29 RING1 (ENSCLAG00000009149) #30 VPS52 (ENSCLAG00000008115) RPS18 (ENSCLAG00000008982) ##34 WDR46 (ENSCLAG00000007512) #36 PFDN6 (ENSCLAG00000010475) #37 RGL2 (ENSCLAG00000009780) TAPBP (ENSCLAG00000010992) DAXX (ENSCLAG00000010016) Degu MODERN SPECIES 46 ENSODEG00000017653 ENSODEG00000017401 ENSODEG00000017414 #7 ENSODEG00000017398 ENSODEG00000017435 #9 ENSODEG00000017402 ##9 ENSODEG00000017510 #13 ENSODEG00000017249 #14 HLA-DOB (ENSODEG00000017495) #15 TAP1 (ENSODEG00000017484) #18 PSMB9 (ENSODEG00000017656) #19 TAP2 (ENSODEG00000017797) #16 PSMB8 (ENSODEG00000017662) #17 HLA-DMB (ENSODEG00000017802) #20 ENSODEG00000017381 #21 BRD2 (ENSODEG00000017239) #22 HLA-DOA (ENSODEG00000017569) #23 HLA-DPA1 (ENSODEG00000017716) #24 COL11A2 (ENSODEG00000017513) #26 RXRB (ENSODEG00000017146) #27 SLC39A7 (ENSODEG00000017361) #28 HSD17B8 (ENSODEG00000017486) #29 RING1 (ENSODEG00000017691) #30 VPS52 (ENSODEG00000017744) ENSODEG00000017344 ##34 B3GALT4 (ENSODEG00000017281) #35 WDR46 (ENSODEG00000017342) #36 ENSODEG00000017649 #37 RGL2 (ENSODEG00000017326) TAPBP (ENSODEG00000017301) DAXX (ENSODEG00000017044) Guinea pig MODERN SPECIES 15 ENSCPOG00000023019 BTNL2 (ENSCPOG00000004277) #7 HLA-DRA (ENSCPOG00000012309) #8 ENSCPOG00000036465 #10 ENSCPOG00000003574 ##9 ENSCPOG00000040083 ##9 ENSCPOG00000014463 HLA-DQB2 (ENSCPOG00000038606) #14 HLA-DOB (ENSCPOG00000033895) #15 TAP2 (ENSCPOG00000038951) #16 PSMB8 (ENSCPOG00000000729) #17 TAP1 (ENSCPOG00000026988) #18 PSMB9 (ENSCPOG00000002121) #19 HLA-DMB (ENSCPOG00000002810) #20 HLA-DMA (ENSCPOG00000015044) #21 BRD2 (ENSCPOG00000002811) #22 HLA-DOA (ENSCPOG00000012562) #23 ENSCPOG00000002427 #24 ENSCPOG00000032859 #25 ENSCPOG00000024142 #25 ENSCPOG00000035477 #24 COL11A2 (ENSCPOG00000020466) #26 RXRB (ENSCPOG00000013936) #27 SLC39A7 (ENSCPOG00000023790) #28 HSD17B8 (ENSCPOG00000013940) #29 RING1 (ENSCPOG00000013943) #30 VPS52 (ENSCPOG00000013947) RPS18 (ENSCPOG00000019675) #34 B3GALT4 (ENSCPOG00000012731) #35 WDR46 (ENSCPOG00000012733) #36 PFDN6 (ENSCPOG00000019520) #37 Naked mole-rat female MODERN SPECIES 4 GPSM3 (ENSHGLG00000012807) HLA-DRA (ENSHGLG00000012243) #8 ENSHGLG00000012074 #9 ENSHGLG00000011873 ##9 ENSHGLG00000011613 ##9 ENSHGLG00000011398 ENSHGLG00000043086 HLA-DQB2 (ENSHGLG00000038840) #14 HLA-DOB (ENSHGLG00000016652) #15 TAP2 (ENSHGLG00000019356) #16 PSMB8 (ENSHGLG00000017087) #17 TAP1 (ENSHGLG00000017081) #18 PSMB9 (ENSHGLG00000036914) #19 HLA-DMB (ENSHGLG00000017060) #20 HLA-DMA (ENSHGLG00000017048) #21 BRD2 (ENSHGLG00000019334) #22 HLA-DOA (ENSHGLG00000019255) #23 HLA-DPA1 (ENSHGLG00000019266) #24 HLA-DPB1 (ENSHGLG00000019389) #25 COL11A2 (ENSHGLG00000018531) #26 RXRB (ENSHGLG00000018456) #27 SLC39A7 (ENSHGLG00000018434) #28 HSD17B8 (ENSHGLG00000019497) #29 RING1 (ENSHGLG00000019474) #30 VPS52 (ENSHGLG00000017226) B3GALT4 (ENSHGLG00000046221) #35 WDR46 (ENSHGLG00000017190) #36 PFDN6 (ENSHGLG00000017170) #37 RGL2 (ENSHGLG00000017158) TAPBP (ENSHGLG00000017138) ZBTB22 (ENSHGLG00000017146) Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b #9 ENSGT00940000155371 #10 ENSGT00940000154993.k.a ##9 ENSGT00940000161821 #13 ENSGT00940000154723.b #14 ENSGT00940000162353 #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Eurasian red squirrel MODERN SPECIES 16 HLA-DRA (ENSSVLG00005007588) #8 ENSSVLG00005007546 #9 ENSSVLG00005007511 #10 ENSSVLG00005007482 ##9 ENSSVLG00005007455 #13 HLA-DQB2 (ENSSVLG00005007368) #14 ENSSVLG00005007173 #13 ENSSVLG00005006864 #14 HLA-DOB (ENSSVLG00005006746) #15 TAP2 (ENSSVLG00005006696) #16 PSMB8 (ENSSVLG00005006647) #17 TAP1 (ENSSVLG00005006618) #18 PSMB9 (ENSSVLG00005006563) #19 HLA-DMB (ENSSVLG00005006515) #20 HLA-DMA (ENSSVLG00005006465) #21 BRD2 (ENSSVLG00005006374) #22 HLA-DOA (ENSSVLG00005006335) #23 HLA-DPA1 (ENSSVLG00005006304) #24 HLA-DPB1 (ENSSVLG00005006269) #25 COL11A2 (ENSSVLG00005005202) #26 RXRB (ENSSVLG00005004952) #27 SLC39A7 (ENSSVLG00005004925) #28 HSD17B8 (ENSSVLG00005004902) #29 RING1 (ENSSVLG00005004804) #30 ENSSVLG00005004778 VPS52 (ENSSVLG00005004757) RPS18 (ENSSVLG00005004721) #34 B3GALT4 (ENSSVLG00005004704) #35 WDR46 (ENSSVLG00005004694) #36 ENSSVLG00005004670 #37 RGL2 (ENSSVLG00005004647) Marmotini ANCESTRAL SPECIES 18 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000154993.k.b #9 ENSGT00940000154993.k.a ##9 ENSGT00940000161821.k #13 ENSGT00940000154723.b #14 ENSGT00940000161821.l.a #13 ENSGT00940000162353.i #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00940000162353.i #15 ENSGT00860000136204 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162498 #24 ENSGT00940000162390 #25 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Arctic ground squirrel MODERN SPECIES 25 HLA-DMB (ENSUPAG00010005014) #20 HLA-DMA (ENSUPAG00010005022) #21 BRD2 (ENSUPAG00010005033) #22 HLA-DOA (ENSUPAG00010005068) #23 HLA-DPB1 (ENSUPAG00010005123) #25 HLA-DPA1 (ENSUPAG00010012558) #24 COL11A2 (ENSUPAG00010012591) #26 RXRB (ENSUPAG00010013376) #27 SLC39A7 (ENSUPAG00010013405) #28 HSD17B8 (ENSUPAG00010013412) #29 RING1 (ENSUPAG00010013424) #30 VPS52 (ENSUPAG00010013433) ENSUPAG00010013506 ##34 B3GALT4 (ENSUPAG00010013513) #35 WDR46 (ENSUPAG00010013516) #36 PFDN6 (ENSUPAG00010013562) #37 RGL2 (ENSUPAG00010013583) TAPBP (ENSUPAG00010013596) Squirrel MODERN SPECIES 76 ENSSTOG00000028098 ##31 HLA-DOB (ENSSTOG00000003405) #15 ENSSTOG00000030715 TAP2 (ENSSTOG00000003413) #16 PSMB8 (ENSSTOG00000019724) #17 TAP1 (ENSSTOG00000003451) #18 PSMB9 (ENSSTOG00000003475) #19 HLA-DMB (ENSSTOG00000019821) #20 HLA-DMA (ENSSTOG00000009246) #21 BRD2 (ENSSTOG00000010807) #22 HLA-DOA (ENSSTOG00000010820) #23 HLA-DPA1 (ENSSTOG00000003558) #24 HLA-DPB1 (ENSSTOG00000003567) #25 COL11A2 (ENSSTOG00000003578) #26 RXRB (ENSSTOG00000027099) #27 SLC39A7 (ENSSTOG00000014304) #28 HSD17B8 (ENSSTOG00000020853) #29 RING1 (ENSSTOG00000026166) #30 VPS52 (ENSSTOG00000002397) ENSSTOG00000002417 ##34 B3GALT4 (ENSSTOG00000024877) #35 WDR46 (ENSSTOG00000002433) #36 PFDN6 (ENSSTOG00000027428) #37 RGL2 (ENSSTOG00000024728) TAPBP (ENSSTOG00000025004) Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 24 ENSMMMG00000023121 RAB8A (ENSMMMG00000023118) TPM4 (ENSMMMG00000022621) ENSMMMG00000022612 ENSMMMG00000022610 ENSMMMG00000022564 ENSMMMG00000022557 CYP4F2 (ENSMMMG00000022533) CYP4F8 (ENSMMMG00000022511) CYP4F22 (ENSMMMG00000022504) PGLYRP2 (ENSMMMG00000022496) RASAL3 (ENSMMMG00000022474) ENSMMMG00000022459 AKAP8L (ENSMMMG00000022438) AKAP8 (ENSMMMG00000022416) ENSMMMG00000022411 #22 ENSMMMG00000022407 EPHX3 (ENSMMMG00000022401) NOTCH3 (ENSMMMG00000022356) ENSMMMG00000022351 ILVBL (ENSMMMG00000022300) SYDE1 (ENSMMMG00000022294) OR1I1 (ENSMMMG00000022293) CASP14 (ENSMMMG00000022289) CCDC105 (ENSMMMG00000022286) SLC1A6 (ENSMMMG00000022279) ENSMMMG00000022278 ENSMMMG00000022277 ENSMMMG00000022259 ENSMMMG00000022258 ENSMMMG00000022253 Alpin marmot MODERN SPECIES 20 ENSMMMG00000018777 #9 ENSMMMG00000018780 ##9 ENSMMMG00000018785 #13 ENSMMMG00000018797 ENSMMMG00000018808 #14 ENSMMMG00000020395 ##31 ENSMMMG00000024056 #14 ENSMMMG00000024215 ##31 HLA-DOB (ENSMMMG00000024217) #15 TAP2 (ENSMMMG00000024218) #16 PSMB8 (ENSMMMG00000024220) #17 TAP1 (ENSMMMG00000024221) #18 PSMB9 (ENSMMMG00000024222) #19 HLA-DMB (ENSMMMG00000024223) #20 HLA-DMA (ENSMMMG00000024224) #21 BRD2 (ENSMMMG00000024225) #22 HLA-DOA (ENSMMMG00000024226) #23 HLA-DPA1 (ENSMMMG00000024227) #24 HLA-DPB1 (ENSMMMG00000024228) #25 COL11A2 (ENSMMMG00000024229) #26 RXRB (ENSMMMG00000024230) #27 SLC39A7 (ENSMMMG00000024231) #28 HSD17B8 (ENSMMMG00000024232) #29 RING1 (ENSMMMG00000024233) #30 VPS52 (ENSMMMG00000024234) ENSMMMG00000024235 ##34 B3GALT4 (ENSMMMG00000024236) #35 WDR46 (ENSMMMG00000024237) #36 PFDN6 (ENSMMMG00000024238) #37 RGL2 (ENSMMMG00000024239) TAPBP (ENSMMMG00000024240) Lagomorpha ANCESTRAL SPECIES 2 ENSGT00940000164957 ENSGT00940000162484 #7 ENSGT00940000160997 #8 ENSGT00940000155371 #10 ENSGT00940000154723.b #14 ENSGT00940000154993 #9 ENSGT00940000161821 #13 ENSGT00940000162353 #15 ENSGT00940000160499 #16 ENSGT00940000157293 #17 ENSGT00940000159023 #18 ENSGT00940000159897 #19 ENSGT00940000160381 #20 ENSGT00940000161157 #21 ENSGT00940000153385.b.a.b #22 ENSGT00940000162112 #23 ENSGT00940000162390 #25 ENSGT00940000162498 #24 ENSGT00940000159762 #26 ENSGT00940000159208.B #27 ENSGT00940000160076 #28 ENSGT00940000160668 #29 ENSGT00940000161022 #30 ENSGT00390000008815 ENSGT00390000012691.d ##34 ENSGT00940000161798 #35 ENSGT00390000007075 #36 ENSGT00390000010512 #37 ENSGT00940000161403 ENSGT00940000159200 Rabbit MODERN SPECIES 3 ENSOCUG00000021762 ENSOCUG00000006769 #7 ENSOCUG00000025822 HLA-DRA (ENSOCUG00000009103) #8 ENSOCUG00000029731 #9 ENSOCUG00000030453 #10 HLA-DQB1 (ENSOCUG00000002485) #14 ENSOCUG00000002480 #13 HLA-DOB (ENSOCUG00000029437) #15 TAP2 (ENSOCUG00000002489) #16 PSMB8 (ENSOCUG00000002131) #17 TAP1 (ENSOCUG00000002135) #18 ENSOCUG00000002139 #19 HLA-DMB (ENSOCUG00000026567) #20 HLA-DMA (ENSOCUG00000022573) #21 BRD2 (ENSOCUG00000003097) #22 ENSOCUG00000003319 #23 HLA-DPB1 (ENSOCUG00000008721) #25 COL11A2 (ENSOCUG00000016497) #26 RXRB (ENSOCUG00000011590) #27 SLC39A7 (ENSOCUG00000011598) #28 HSD17B8 (ENSOCUG00000020995) #29 VPS52 (ENSOCUG00000010533) ENSOCUG00000010546 ##34 B3GALT4 (ENSOCUG00000010550) #35 ENSOCUG00000010554 #36 PFDN6 (ENSOCUG00000010559) #37 RGL2 (ENSOCUG00000026930) TAPBP (ENSOCUG00000010563) DAXX (ENSOCUG00000010574) SMIM40 (ENSOCUG00000037016) Pika MODERN SPECIES 3165 ENSOPRG00000007415 #20 HLA-DMA (ENSOPRG00000007424) #21 BRD2 (ENSOPRG00000007431) #22 HLA-DOA (ENSOPRG00000007456) #23 ENSOPRG00000007464 #24