Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000154993	ENSGT00940000162892	ENSGT00940000154723.b	ENSGT00940000161821	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Glires	ANCESTRAL SPECIES	5	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000154993	ENSGT00940000162892	ENSGT00940000154723.b	ENSGT00940000161821	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Lagomorpha	ANCESTRAL SPECIES	2		ENSGT00940000164957	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000154723.b	ENSGT00940000154993	ENSGT00940000161821	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162390	ENSGT00940000162498 #24	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Pika	MODERN SPECIES	3165														ENSOPRG00000007415 #20	HLA-DMA (ENSOPRG00000007424) #21	BRD2 (ENSOPRG00000007431) #22	HLA-DOA (ENSOPRG00000007456) #23	ENSOPRG00000007464 #24
Rabbit	MODERN SPECIES	3	ENSOCUG00000021762	ENSOCUG00000006769	ENSOCUG00000025822	HLA-DRA (ENSOCUG00000009103)	ENSOCUG00000029731	ENSOCUG00000030453	HLA-DQB1 (ENSOCUG00000002485)	ENSOCUG00000002480	HLA-DOB (ENSOCUG00000029437)	TAP2 (ENSOCUG00000002489)	PSMB8 (ENSOCUG00000002131)	TAP1 (ENSOCUG00000002135)	ENSOCUG00000002139	HLA-DMB (ENSOCUG00000026567) #20	HLA-DMA (ENSOCUG00000022573) #21	BRD2 (ENSOCUG00000003097) #22	ENSOCUG00000003319 #23	HLA-DPB1 (ENSOCUG00000008721)	COL11A2 (ENSOCUG00000016497)	RXRB (ENSOCUG00000011590)	SLC39A7 (ENSOCUG00000011598)	HSD17B8 (ENSOCUG00000020995)	VPS52 (ENSOCUG00000010533)	ENSOCUG00000010546	B3GALT4 (ENSOCUG00000010550)	ENSOCUG00000010554	PFDN6 (ENSOCUG00000010559)	RGL2 (ENSOCUG00000026930)	TAPBP (ENSOCUG00000010563)	DAXX (ENSOCUG00000010574)	SMIM40 (ENSOCUG00000037016)
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000160997	ENSGT00940000154993.k.b	ENSGT00940000155371	ENSGT00940000154993.l	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Muroidea	ANCESTRAL SPECIES	15	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972	ENSGT00940000161403
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT01030000234972
Cricetinae	ANCESTRAL SPECIES	43	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000154993.k.b.b	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022
Chinese hamster chok1gshd	MODERN SPECIES	303	ENSCGRG00001001955	Btnl1 (ENSCGRG00001017970)	Btnl2 (ENSCGRG00001016923)	H2-Ea (ENSCGRG00001015369)	ENSCGRG00001015049	ENSCGRG00001021279	H2-Aa (ENSCGRG00001020824)	H2-Ab1 (ENSCGRG00001020630)	H2-Ob (ENSCGRG00001020078)	ENSCGRG00001019448	Psmb8 (ENSCGRG00001018009)	Tap1 (ENSCGRG00001009114)	Psmb9 (ENSCGRG00001007415)	ENSCGRG00001001555 #20	H2-DMa (ENSCGRG00001000682) #21	Brd2 (ENSCGRG00001018148) #22	H2-Oa (ENSCGRG00001013616) #23	ENSCGRG00001009189 #24	ENSCGRG00001007476	Col11a2 (ENSCGRG00001016209)	Rxrb (ENSCGRG00001000192)	Slc39a7 (ENSCGRG00001022298)	Hsd17b8 (ENSCGRG00001003834)	Ring1 (ENSCGRG00001001992)	ENSCGRG00001000484	ENSCGRG00001000045	ENSCGRG00001001839	ENSCGRG00001020054	ENSCGRG00001018024	ENSCGRG00001013282	ENSCGRG00001018149
Golden Hamster	MODERN SPECIES	856	Notch4 (ENSMAUG00000015895)	ENSMAUG00000009410	ENSMAUG00000015609	Btnl1 (ENSMAUG00000016817)	Btnl2 (ENSMAUG00000003530)	H2-Eb2 (ENSMAUG00000018151)	H2-Aa (ENSMAUG00000003363)	H2-Ab1 (ENSMAUG00000020395)	H2-Ob (ENSMAUG00000007698)	Tap2 (ENSMAUG00000015081)	Psmb8 (ENSMAUG00000003396)	Tap1 (ENSMAUG00000017718)	Psmb9 (ENSMAUG00000007584)	ENSMAUG00000008923 #20	H2-DMa (ENSMAUG00000000861) #21	Brd2 (ENSMAUG00000006799) #22	Col11a2 (ENSMAUG00000021348)	Rxrb (ENSMAUG00000009043)	Slc39a7 (ENSMAUG00000015255)	Hsd17b8 (ENSMAUG00000013407)	Ring1 (ENSMAUG00000012254)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000154993.l	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Northern American deer mouse	MODERN SPECIES	13	Btnl2 (ENSPEMG00000007431)	H2-Ea (ENSPEMG00000008261)	H2-Eb2 (ENSPEMG00000006456)	H2-Eb1 (ENSPEMG00000002889)	ENSPEMG00000012679	ENSPEMG00000015401	ENSPEMG00000007095	ENSPEMG00000012719	H2-Ob (ENSPEMG00000001796)	Tap2 (ENSPEMG00000010503)	Psmb8 (ENSPEMG00000012170)	Tap1 (ENSPEMG00000012461)	Psmb9 (ENSPEMG00000009609)	ENSPEMG00000018040 #20	H2-DMa (ENSPEMG00000013203) #21	Brd2 (ENSPEMG00000018138) #22	H2-Oa (ENSPEMG00000011158) #23	ENSPEMG00000015442 #24	ENSPEMG00000026148	Col11a2 (ENSPEMG00000016918)	Rxrb (ENSPEMG00000018454)	Slc39a7 (ENSPEMG00000003403)	Hsd17b8 (ENSPEMG00000012925)	Ring1 (ENSPEMG00000019238)	ENSPEMG00000024622	ENSPEMG00000030975	ENSPEMG00000030319	Rps18 (ENSPEMG00000005058)	B3galt4 (ENSPEMG00000004762)	Wdr46 (ENSPEMG00000019179)	Pfdn6 (ENSPEMG00000005228)
Prairie vole	MODERN SPECIES	352	ENSMOCG00000011431	Btnl1 (ENSMOCG00000018715)	Btnl2 (ENSMOCG00000014437)	H2-Ea (ENSMOCG00000008786)	ENSMOCG00000019721	ENSMOCG00000017941	ENSMOCG00000013355	H2-Ab1 (ENSMOCG00000008439)	H2-Ob (ENSMOCG00000008562)	Tap2 (ENSMOCG00000022898)	Psmb8 (ENSMOCG00000014719)	Tap1 (ENSMOCG00000019762)	Psmb9 (ENSMOCG00000005369)	ENSMOCG00000022309 #20	H2-DMa (ENSMOCG00000002744) #21	Brd2 (ENSMOCG00000016368) #22	H2-Oa (ENSMOCG00000020236) #23	ENSMOCG00000010963 #24	Col11a2 (ENSMOCG00000016852)	Rxrb (ENSMOCG00000000374)	Slc39a7 (ENSMOCG00000019993)	Hsd17b8 (ENSMOCG00000001695)	Ring1 (ENSMOCG00000020973)	ENSMOCG00000014473	Vps52 (ENSMOCG00000004229)	Rps18 (ENSMOCG00000018024)	B3galt4 (ENSMOCG00000011979)	Wdr46 (ENSMOCG00000014412)	Pfdn6 (ENSMOCG00000022424)	Rgl2 (ENSMOCG00000022698)	Tapbp (ENSMOCG00000010072)
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Mus	ANCESTRAL SPECIES	16	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00980000198488.m.a.b.a.b.a.a.a.c	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381.h #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381.h #20	ENSGT00940000160381.g #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512.`b	ENSGT00940000161403	ENSGT00940000159200
Mouse	MODERN SPECIES	8	Btnl1 (ENSMUSG00000062638)	Btnl2 (ENSMUSG00000024340)	H2-Ea (ENSMUSG00000036322)	H2-Eb2 (ENSMUSG00000067341)	H2-Eb1 (ENSMUSG00000060586)	H2-Aa (ENSMUSG00000036594)	H2-Ab1 (ENSMUSG00000073421)	H2-Ob (ENSMUSG00000041538)	Tap2 (ENSMUSG00000024339)	Psmb8 (ENSMUSG00000024338)	Tap1 (ENSMUSG00000037321)	Psmb9 (ENSMUSG00000096727)	H2-DMb1 (ENSMUSG00000079547) #20	H2-DMb2 (ENSMUSG00000037548) #20	H2-DMa (ENSMUSG00000037649) #21	Brd2 (ENSMUSG00000024335) #22	H2-Oa (ENSMUSG00000024334) #23	Col11a2 (ENSMUSG00000024330)	Rxrb (ENSMUSG00000039656)	Slc39a7 (ENSMUSG00000024327)	Hsd17b8 (ENSMUSG00000073422)	Ring1 (ENSMUSG00000024325)	H2-K1 (ENSMUSG00000061232)	Vps52 (ENSMUSG00000024319)	Rps18 (ENSMUSG00000008668)	B3galt4 (ENSMUSG00000067370)	Wdr46 (ENSMUSG00000024312)	Pfdn6 (ENSMUSG00000024309)	Rgl2 (ENSMUSG00000041354)	Zbtb22 (ENSMUSG00000051390)	Tapbp (ENSMUSG00000024308)
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b.b	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381.h #20	ENSGT00940000160381.g #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a	ENSGT00390000008815	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512.`b	ENSGT00940000161403	ENSGT00940000159200
Steppe mouse	MODERN SPECIES	2564	Btnl1 (ENSMSIG00000010748)	Btnl2 (ENSMSIG00000010760)	H2-Ea (ENSMSIG00000010776)	H2-Eb2 (ENSMSIG00000010788)	ENSMSIG00000010807	H2-Aa (ENSMSIG00000010823)	ENSMSIG00000010843	H2-Ob (ENSMSIG00000010868)	Tap2 (ENSMSIG00000010919)	ENSMSIG00000010972	Psmb8 (ENSMSIG00000010986)	ENSMSIG00000011012	Psmb9 (ENSMSIG00000011042)	H2-DMb1 (ENSMSIG00000011055) #20	H2-DMa (ENSMSIG00000011088) #21	Brd2 (ENSMSIG00000011118) #22	H2-Oa (ENSMSIG00000011198) #23	ENSMSIG00000011214 #24	Col11a2 (ENSMSIG00000011347)	Rxrb (ENSMSIG00000012091)	Slc39a7 (ENSMSIG00000012137)	ENSMSIG00000012153	Ring1 (ENSMSIG00000012190)	ENSMSIG00000012243	ENSMSIG00000012249	Vps52 (ENSMSIG00000012295)	Rps18 (ENSMSIG00000012382)	B3galt4 (ENSMSIG00000012406)	Wdr46 (ENSMSIG00000012419)	Pfdn6 (ENSMSIG00000012469)	Rgl2 (ENSMSIG00000012505)
spretus	MODERN SPECIES	8	Btnl1 (MGP_SPRETEiJ_G0022363)	Btnl2 (MGP_SPRETEiJ_G0022362)	H2-Eb2 (MGP_SPRETEiJ_G0022361)	MGP_SPRETEiJ_G0022360	H2-Aa (MGP_SPRETEiJ_G0022359)	H2-Ab1 (MGP_SPRETEiJ_G0022358)	H2-Ob (MGP_SPRETEiJ_G0022357)	MGP_SPRETEiJ_G0022356	Tap2 (MGP_SPRETEiJ_G0022355)	Psmb8 (MGP_SPRETEiJ_G0022354)	Tap1 (MGP_SPRETEiJ_G0022353)	Psmb9 (MGP_SPRETEiJ_G0022352)	H2-DMb2 (MGP_SPRETEiJ_G0022351) #20	MGP_SPRETEiJ_G0022350 #20	H2-DMa (MGP_SPRETEiJ_G0022349) #21	Brd2 (MGP_SPRETEiJ_G0022348) #22	H2-Oa (MGP_SPRETEiJ_G0022347) #23	Col11a2 (MGP_SPRETEiJ_G0022346)	Rxrb (MGP_SPRETEiJ_G0022345)	Slc39a7 (MGP_SPRETEiJ_G0022344)	Hsd17b8 (MGP_SPRETEiJ_G0022343)	Ring1 (MGP_SPRETEiJ_G0022342)	MGP_SPRETEiJ_G0022340	B3galt4 (MGP_SPRETEiJ_G0022339)	Wdr46 (MGP_SPRETEiJ_G0022338)	Pfdn6 (MGP_SPRETEiJ_G0022337)	Rgl2 (MGP_SPRETEiJ_G0022336)	Zbtb22 (MGP_SPRETEiJ_G0022335)	Tapbp (MGP_SPRETEiJ_G0022334)	Daxx (MGP_SPRETEiJ_G0022333)	Cd320 (MGP_SPRETEiJ_G0022332)
Ryukyu mouse	MODERN SPECIES	8	Btnl1 (MGP_CAROLIEiJ_G0021457)	Btnl2 (MGP_CAROLIEiJ_G0021456)	H2-Eb2 (MGP_CAROLIEiJ_G0021455)	MGP_CAROLIEiJ_G0021454	H2-Aa (MGP_CAROLIEiJ_G0021453)	H2-Ab1 (MGP_CAROLIEiJ_G0021452)	H2-Ob (MGP_CAROLIEiJ_G0021451)	MGP_CAROLIEiJ_G0021450	Tap2 (MGP_CAROLIEiJ_G0021449)	Psmb8 (MGP_CAROLIEiJ_G0021448)	Tap1 (MGP_CAROLIEiJ_G0021447)	Psmb9 (MGP_CAROLIEiJ_G0021446)	MGP_CAROLIEiJ_G0021445 #20	MGP_CAROLIEiJ_G0021444 #20	H2-DMa (MGP_CAROLIEiJ_G0021443) #21	Brd2 (MGP_CAROLIEiJ_G0021442) #22	H2-Oa (MGP_CAROLIEiJ_G0021441) #23	Col11a2 (MGP_CAROLIEiJ_G0021440)	Rxrb (MGP_CAROLIEiJ_G0021439)	Slc39a7 (MGP_CAROLIEiJ_G0021438)	Hsd17b8 (MGP_CAROLIEiJ_G0021437)	Ring1 (MGP_CAROLIEiJ_G0021436)	MGP_CAROLIEiJ_G0021435	MGP_CAROLIEiJ_G0021434	MGP_CAROLIEiJ_G0021432	MGP_CAROLIEiJ_G0021431	MGP_CAROLIEiJ_G0021430	MGP_CAROLIEiJ_G0021429	Rps18 (MGP_CAROLIEiJ_G0021428)	B3galt4 (MGP_CAROLIEiJ_G0021427)	Wdr46 (MGP_CAROLIEiJ_G0021426)
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020455	Tsbp1 (MGP_PahariEiJ_G0020454)	Btnl1 (MGP_PahariEiJ_G0020453)	Btnl2 (MGP_PahariEiJ_G0020452)	H2-Eb2 (MGP_PahariEiJ_G0020451)	MGP_PahariEiJ_G0020450	H2-Aa (MGP_PahariEiJ_G0020449)	H2-Ab1 (MGP_PahariEiJ_G0020448)	H2-Ob (MGP_PahariEiJ_G0020447)	MGP_PahariEiJ_G0020446	Tap2 (MGP_PahariEiJ_G0020445)	Psmb8 (MGP_PahariEiJ_G0020444)	Tap1 (MGP_PahariEiJ_G0020443)	Psmb9 (MGP_PahariEiJ_G0020442)	H2-DMa (MGP_PahariEiJ_G0020441) #21	Brd2 (MGP_PahariEiJ_G0020440) #22	H2-Oa (MGP_PahariEiJ_G0020439) #23	Col11a2 (MGP_PahariEiJ_G0020438)	Rxrb (MGP_PahariEiJ_G0020437)	Slc39a7 (MGP_PahariEiJ_G0020436)	Hsd17b8 (MGP_PahariEiJ_G0020435)	Ring1 (MGP_PahariEiJ_G0020434)	MGP_PahariEiJ_G0020433	B3galt4 (MGP_PahariEiJ_G0020432)	Wdr46 (MGP_PahariEiJ_G0020431)	Pfdn6 (MGP_PahariEiJ_G0020430)	Rgl2 (MGP_PahariEiJ_G0020429)	Zbtb22 (MGP_PahariEiJ_G0020428)	Tapbp (MGP_PahariEiJ_G0020427)	Daxx (MGP_PahariEiJ_G0020426)	Cd320 (MGP_PahariEiJ_G0020425)
Rat	MODERN SPECIES	12	Tsbp1 (ENSRNOG00000039398)	Btnl3 (ENSRNOG00000039396)	Btnl2 (ENSRNOG00000028541)	RT1-Da (ENSRNOG00000032844)	RT1-Db2 (ENSRNOG00000030431)	RT1-Db1 (ENSRNOG00000033215)	RT1-Ba (ENSRNOG00000000451)	RT1-Bb (ENSRNOG00000032708)	RT1-DOb (ENSRNOG00000000454)	Tap2 (ENSRNOG00000000455)	Psmb8 (ENSRNOG00000000456)	Tap1 (ENSRNOG00000000457)	Psmb9 (ENSRNOG00000000459)	RT1-DMb (ENSRNOG00000049491) #20	RT1-DMa (ENSRNOG00000066773) #21	Brd2 (ENSRNOG00000000461) #22	RT1-DOa (ENSRNOG00000026762) #23	RT1-Ha (ENSRNOG00000045908) #24	RT1-Hb-ps1 (ENSRNOG00000061936)	Col11a2 (ENSRNOG00000000463)	Rxrb (ENSRNOG00000000464)	Slc39a7 (ENSRNOG00000000465)	Hsd17b8 (ENSRNOG00000000466)	Ring1 (ENSRNOG00000000467)	Vps52 (ENSRNOG00000000470)	ENSRNOG00000062487	ENSRNOG00000069209	B3galt4 (ENSRNOG00000000471)	Wdr46 (ENSRNOG00000031171)	Pfdn6 (ENSRNOG00000000473)	Rgl2 (ENSRNOG00000000474)
Upper Galilee mountains blind mole rat	MODERN SPECIES	369											Psmb8 (ENSNGAG00000001376)	Tap1 (ENSNGAG00000012692)	Psmb9 (ENSNGAG00000022287)	ENSNGAG00000015143 #20	H2-DMa (ENSNGAG00000022770) #21	Brd2 (ENSNGAG00000022459) #22	H2-Oa (ENSNGAG00000015259) #23	ENSNGAG00000014641
Lesser Egyptian jerboa	MODERN SPECIES	41								H2-Ob (ENSJJAG00000022338)	ENSJJAG00000003836	Tap2 (ENSJJAG00000004300)	Psmb8 (ENSJJAG00000023598)	Tap1 (ENSJJAG00000022861)	Psmb9 (ENSJJAG00000022884)	ENSJJAG00000004664 #20	H2-DMa (ENSJJAG00000012555) #21	Brd2 (ENSJJAG00000010183) #22	H2-Oa (ENSJJAG00000000542) #23	ENSJJAG00000023713	Col11a2 (ENSJJAG00000010448)	Rxrb (ENSJJAG00000004710)	Slc39a7 (ENSJJAG00000014121)	Hsd17b8 (ENSJJAG00000021794)	Ring1 (ENSJJAG00000022246)	Vps52 (ENSJJAG00000020884)	Rps18 (ENSJJAG00000018899)	Wdr46 (ENSJJAG00000021960)	Pfdn6 (ENSJJAG00000009874)	ENSJJAG00000023644	ENSJJAG00000021860	ENSJJAG00000000854	Daxx (ENSJJAG00000022212)
Kangaroo rat	MODERN SPECIES	519	Gpsm3 (ENSDORG00000025609)	ENSDORG00000009936	ENSDORG00000028297	H2-Ea (ENSDORG00000014782)	ENSDORG00000024908	ENSDORG00000029602	ENSDORG00000006991	ENSDORG00000011904	ENSDORG00000008310	Tap2 (ENSDORG00000008311)	Psmb8 (ENSDORG00000028592)	Tap1 (ENSDORG00000029698)	Psmb9 (ENSDORG00000006231)	ENSDORG00000005172 #20	ENSDORG00000005173 #21	Brd2 (ENSDORG00000004497) #22	H2-Oa (ENSDORG00000004499) #23	ENSDORG00000004500 #24	ENSDORG00000024606	Col11a2 (ENSDORG00000013815)	Rxrb (ENSDORG00000013816)	Slc39a7 (ENSDORG00000013818)	Hsd17b8 (ENSDORG00000013819)	Ring1 (ENSDORG00000013820)	Vps52 (ENSDORG00000013822)	ENSDORG00000013825	B3galt4 (ENSDORG00000013826)	Wdr46 (ENSDORG00000013827)	ENSDORG00000013828	Rgl2 (ENSDORG00000013829)	Tapbp (ENSDORG00000013835)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000162892	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00940000162450	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00390000012691.c.b.p	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00980000198621	ENSGT00940000162450	ENSGT00940000162079	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000155371	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d.o	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Long-tailed chinchilla	MODERN SPECIES	144	ENSCLAG00000011744	ENSCLAG00000015677	BTNL2 (ENSCLAG00000007142)	HLA-DRA (ENSCLAG00000009768)	ENSCLAG00000013098	ENSCLAG00000016042	ENSCLAG00000009507	HLA-DQB2 (ENSCLAG00000011869)	HLA-DOB (ENSCLAG00000011735)	TAP2 (ENSCLAG00000012654)	PSMB8 (ENSCLAG00000006990)	TAP1 (ENSCLAG00000008052)	PSMB9 (ENSCLAG00000007918)	HLA-DMB (ENSCLAG00000008468) #20	HLA-DMA (ENSCLAG00000014679) #21	BRD2 (ENSCLAG00000009750) #22	HLA-DOA (ENSCLAG00000011531) #23	HLA-DPB1 (ENSCLAG00000013126)	HLA-DPA1 (ENSCLAG00000010668) #24	COL11A2 (ENSCLAG00000007783)	RXRB (ENSCLAG00000013699)	SLC39A7 (ENSCLAG00000014475)	HSD17B8 (ENSCLAG00000007885)	RING1 (ENSCLAG00000009149)	VPS52 (ENSCLAG00000008115)	RPS18 (ENSCLAG00000008982)	WDR46 (ENSCLAG00000007512)	PFDN6 (ENSCLAG00000010475)	RGL2 (ENSCLAG00000009780)	TAPBP (ENSCLAG00000010992)	DAXX (ENSCLAG00000010016)
Degu	MODERN SPECIES	46	ENSODEG00000017653	ENSODEG00000017401	ENSODEG00000017414	ENSODEG00000017398	ENSODEG00000017435	ENSODEG00000017402	ENSODEG00000017510	ENSODEG00000017249	HLA-DOB (ENSODEG00000017495)	TAP1 (ENSODEG00000017484)	PSMB9 (ENSODEG00000017656)	TAP2 (ENSODEG00000017797)	PSMB8 (ENSODEG00000017662)	HLA-DMB (ENSODEG00000017802) #20	ENSODEG00000017381 #21	BRD2 (ENSODEG00000017239) #22	HLA-DOA (ENSODEG00000017569) #23	HLA-DPA1 (ENSODEG00000017716) #24	COL11A2 (ENSODEG00000017513)	RXRB (ENSODEG00000017146)	SLC39A7 (ENSODEG00000017361)	HSD17B8 (ENSODEG00000017486)	RING1 (ENSODEG00000017691)	VPS52 (ENSODEG00000017744)	ENSODEG00000017344	B3GALT4 (ENSODEG00000017281)	WDR46 (ENSODEG00000017342)	ENSODEG00000017649	RGL2 (ENSODEG00000017326)	TAPBP (ENSODEG00000017301)	DAXX (ENSODEG00000017044)
Guinea pig	MODERN SPECIES	15	ENSCPOG00000023019	BTNL2 (ENSCPOG00000004277)	HLA-DRA (ENSCPOG00000012309)	ENSCPOG00000036465	ENSCPOG00000003574	ENSCPOG00000040083	ENSCPOG00000014463	HLA-DQB2 (ENSCPOG00000038606)	HLA-DOB (ENSCPOG00000033895)	TAP2 (ENSCPOG00000038951)	PSMB8 (ENSCPOG00000000729)	TAP1 (ENSCPOG00000026988)	PSMB9 (ENSCPOG00000002121)	HLA-DMB (ENSCPOG00000002810) #20	HLA-DMA (ENSCPOG00000015044) #21	BRD2 (ENSCPOG00000002811) #22	HLA-DOA (ENSCPOG00000012562) #23	ENSCPOG00000002427 #24	ENSCPOG00000032859	ENSCPOG00000024142	ENSCPOG00000035477 #24	COL11A2 (ENSCPOG00000020466)	RXRB (ENSCPOG00000013936)	SLC39A7 (ENSCPOG00000023790)	HSD17B8 (ENSCPOG00000013940)	RING1 (ENSCPOG00000013943)	VPS52 (ENSCPOG00000013947)	RPS18 (ENSCPOG00000019675)	B3GALT4 (ENSCPOG00000012731)	WDR46 (ENSCPOG00000012733)	PFDN6 (ENSCPOG00000019520)
Naked mole-rat female	MODERN SPECIES	4	GPSM3 (ENSHGLG00000012807)	HLA-DRA (ENSHGLG00000012243)	ENSHGLG00000012074	ENSHGLG00000011873	ENSHGLG00000011613	ENSHGLG00000011398	ENSHGLG00000043086	HLA-DQB2 (ENSHGLG00000038840)	HLA-DOB (ENSHGLG00000016652)	TAP2 (ENSHGLG00000019356)	PSMB8 (ENSHGLG00000017087)	TAP1 (ENSHGLG00000017081)	PSMB9 (ENSHGLG00000036914)	HLA-DMB (ENSHGLG00000017060) #20	HLA-DMA (ENSHGLG00000017048) #21	BRD2 (ENSHGLG00000019334) #22	HLA-DOA (ENSHGLG00000019255) #23	HLA-DPA1 (ENSHGLG00000019266) #24	HLA-DPB1 (ENSHGLG00000019389)	COL11A2 (ENSHGLG00000018531)	RXRB (ENSHGLG00000018456)	SLC39A7 (ENSHGLG00000018434)	HSD17B8 (ENSHGLG00000019497)	RING1 (ENSHGLG00000019474)	VPS52 (ENSHGLG00000017226)	B3GALT4 (ENSHGLG00000046221)	WDR46 (ENSHGLG00000017190)	PFDN6 (ENSHGLG00000017170)	RGL2 (ENSHGLG00000017158)	TAPBP (ENSHGLG00000017138)	ZBTB22 (ENSHGLG00000017146)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b	ENSGT00940000155371	ENSGT00940000154993.k.a	ENSGT00940000161821	ENSGT00940000154723.b	ENSGT00940000162353	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Eurasian red squirrel	MODERN SPECIES	16	HLA-DRA (ENSSVLG00005007588)	ENSSVLG00005007546	ENSSVLG00005007511	ENSSVLG00005007482	ENSSVLG00005007455	HLA-DQB2 (ENSSVLG00005007368)	ENSSVLG00005007173	ENSSVLG00005006864	HLA-DOB (ENSSVLG00005006746)	TAP2 (ENSSVLG00005006696)	PSMB8 (ENSSVLG00005006647)	TAP1 (ENSSVLG00005006618)	PSMB9 (ENSSVLG00005006563)	HLA-DMB (ENSSVLG00005006515) #20	HLA-DMA (ENSSVLG00005006465) #21	BRD2 (ENSSVLG00005006374) #22	HLA-DOA (ENSSVLG00005006335) #23	HLA-DPA1 (ENSSVLG00005006304) #24	HLA-DPB1 (ENSSVLG00005006269)	COL11A2 (ENSSVLG00005005202)	RXRB (ENSSVLG00005004952)	SLC39A7 (ENSSVLG00005004925)	HSD17B8 (ENSSVLG00005004902)	RING1 (ENSSVLG00005004804)	ENSSVLG00005004778	VPS52 (ENSSVLG00005004757)	RPS18 (ENSSVLG00005004721)	B3GALT4 (ENSSVLG00005004704)	WDR46 (ENSSVLG00005004694)	ENSSVLG00005004670	RGL2 (ENSSVLG00005004647)
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000162484	ENSGT00940000160997	ENSGT00940000154993.k.b	ENSGT00940000154993.k.a	ENSGT00940000161821.k	ENSGT00940000154723.b	ENSGT00940000161821.l.a	ENSGT00940000162353.i	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Marmotini_b	ANCESTRAL SPECIES	8								ENSGT00940000162353.i	ENSGT00860000136204	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023	ENSGT00940000159897	ENSGT00940000160381 #20	ENSGT00940000161157 #21	ENSGT00940000153385.b.a.b #22	ENSGT00940000162112 #23	ENSGT00940000162498 #24	ENSGT00940000162390	ENSGT00940000159762	ENSGT00940000159208.B	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000161022	ENSGT00390000008815	ENSGT00390000012691.d	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000010512	ENSGT00940000161403	ENSGT00940000159200
Arctic ground squirrel	MODERN SPECIES	25														HLA-DMB (ENSUPAG00010005014) #20	HLA-DMA (ENSUPAG00010005022) #21	BRD2 (ENSUPAG00010005033) #22	HLA-DOA (ENSUPAG00010005068) #23	HLA-DPB1 (ENSUPAG00010005123)	HLA-DPA1 (ENSUPAG00010012558) #24	COL11A2 (ENSUPAG00010012591)	RXRB (ENSUPAG00010013376)	SLC39A7 (ENSUPAG00010013405)	HSD17B8 (ENSUPAG00010013412)	RING1 (ENSUPAG00010013424)	VPS52 (ENSUPAG00010013433)	ENSUPAG00010013506	B3GALT4 (ENSUPAG00010013513)	WDR46 (ENSUPAG00010013516)	PFDN6 (ENSUPAG00010013562)	RGL2 (ENSUPAG00010013583)	TAPBP (ENSUPAG00010013596)
Squirrel	MODERN SPECIES	76							ENSSTOG00000028098	HLA-DOB (ENSSTOG00000003405)	ENSSTOG00000030715	TAP2 (ENSSTOG00000003413)	PSMB8 (ENSSTOG00000019724)	TAP1 (ENSSTOG00000003451)	PSMB9 (ENSSTOG00000003475)	HLA-DMB (ENSSTOG00000019821) #20	HLA-DMA (ENSSTOG00000009246) #21	BRD2 (ENSSTOG00000010807) #22	HLA-DOA (ENSSTOG00000010820) #23	HLA-DPA1 (ENSSTOG00000003558) #24	HLA-DPB1 (ENSSTOG00000003567)	COL11A2 (ENSSTOG00000003578)	RXRB (ENSSTOG00000027099)	SLC39A7 (ENSSTOG00000014304)	HSD17B8 (ENSSTOG00000020853)	RING1 (ENSSTOG00000026166)	VPS52 (ENSSTOG00000002397)	ENSSTOG00000002417	B3GALT4 (ENSSTOG00000024877)	WDR46 (ENSSTOG00000002433)	PFDN6 (ENSSTOG00000027428)	RGL2 (ENSSTOG00000024728)	TAPBP (ENSSTOG00000025004)
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	24	ENSMMMG00000023121	RAB8A (ENSMMMG00000023118)	TPM4 (ENSMMMG00000022621)	ENSMMMG00000022612	ENSMMMG00000022610	ENSMMMG00000022564	ENSMMMG00000022557	CYP4F2 (ENSMMMG00000022533)	CYP4F8 (ENSMMMG00000022511)	CYP4F22 (ENSMMMG00000022504)	PGLYRP2 (ENSMMMG00000022496)	RASAL3 (ENSMMMG00000022474)	ENSMMMG00000022459	AKAP8L (ENSMMMG00000022438)	AKAP8 (ENSMMMG00000022416)	ENSMMMG00000022411 #22	ENSMMMG00000022407	EPHX3 (ENSMMMG00000022401)	NOTCH3 (ENSMMMG00000022356)	ENSMMMG00000022351	ILVBL (ENSMMMG00000022300)	SYDE1 (ENSMMMG00000022294)	OR1I1 (ENSMMMG00000022293)	CASP14 (ENSMMMG00000022289)	CCDC105 (ENSMMMG00000022286)	SLC1A6 (ENSMMMG00000022279)	ENSMMMG00000022278	ENSMMMG00000022277	ENSMMMG00000022259	ENSMMMG00000022258	ENSMMMG00000022253
Alpin marmot	MODERN SPECIES	20	ENSMMMG00000018777	ENSMMMG00000018780	ENSMMMG00000018785	ENSMMMG00000018797	ENSMMMG00000018808	ENSMMMG00000020395	ENSMMMG00000024056	ENSMMMG00000024215	HLA-DOB (ENSMMMG00000024217)	TAP2 (ENSMMMG00000024218)	PSMB8 (ENSMMMG00000024220)	TAP1 (ENSMMMG00000024221)	PSMB9 (ENSMMMG00000024222)	HLA-DMB (ENSMMMG00000024223) #20	HLA-DMA (ENSMMMG00000024224) #21	BRD2 (ENSMMMG00000024225) #22	HLA-DOA (ENSMMMG00000024226) #23	HLA-DPA1 (ENSMMMG00000024227) #24	HLA-DPB1 (ENSMMMG00000024228)	COL11A2 (ENSMMMG00000024229)	RXRB (ENSMMMG00000024230)	SLC39A7 (ENSMMMG00000024231)	HSD17B8 (ENSMMMG00000024232)	RING1 (ENSMMMG00000024233)	VPS52 (ENSMMMG00000024234)	ENSMMMG00000024235	B3GALT4 (ENSMMMG00000024236)	WDR46 (ENSMMMG00000024237)	PFDN6 (ENSMMMG00000024238)	RGL2 (ENSMMMG00000024239)	TAPBP (ENSMMMG00000024240)
Tree shrew	MODERN SPECIES	5170															HLA-DMB (ENSTBEG00000016414) #20	BRD2 (ENSTBEG00000016659) #22