Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000183135.B #22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000183135.B #22
Vertebrata	ANCESTRAL SPECIES	197																ENSGT00950000183135.B #22	ENSGT00730000111063 #23	ENSGT00940000164222
Gnathostomata	ANCESTRAL SPECIES	132		ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000155068	ENSGT00940000161152 #14	ENSGT00940000165789	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000003967	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES	4	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000155068.a.b	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702 #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Sarcopterygii	ANCESTRAL SPECIES	13	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702 #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Tetrapoda	ANCESTRAL SPECIES	17	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702 #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Amniota	ANCESTRAL SPECIES	10	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Mammalia	ANCESTRAL SPECIES	14	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Theria	ANCESTRAL SPECIES	26	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Eutheria	ANCESTRAL SPECIES	13	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000166688	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000166688	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Pecora	ANCESTRAL SPECIES	12	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00940000166688	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000169826	ENSGT00390000004068 #35
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000169826	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000169826	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Bovinae	ANCESTRAL SPECIES	22	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00960000193053	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000169826	ENSGT00390000004068 #35
Bos	ANCESTRAL SPECIES	23	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000169826	ENSGT00390000004068 #35
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000169826	ENSGT00390000004068 #35
Hybrid Bos Indicus	MODERN SPECIES	18	PNLIP (ENSBIXG00005006589) #7	ENSBIXG00005019117 #8	PNLIPRP2 (ENSBIXG00005007337) #9	C10orf82 (ENSBIXG00005019183) #10	HSPA12A (ENSBIXG00005019246) #11	ENO4 (ENSBIXG00005019425) #12	SHTN1 (ENSBIXG00005019502) #13	VAX1 (ENSBIXG00005019565) #14	KCNK18 (ENSBIXG00005006609) #15	SLC18A2 (ENSBIXG00005019615) #16	PDZD8 (ENSBIXG00005019643) #17	EMX2 (ENSBIXG00005019671) #18	RAB11FIP2 (ENSBIXG00005003218) #19	FAM204A (ENSBIXG00005019733) #20	CACUL1 (ENSBIXG00005019793) #21	NANOS1 (ENSBIXG00005019834) #22	EIF3A (ENSBIXG00005019889) #23	DENND10 (ENSBIXG00005019929) #24	SFXN4 (ENSBIXG00005019982) #25	PRDX3 (ENSBIXG00005020003) #26	GRK5 (ENSBIXG00005020062) #27	RGS10 (ENSBIXG00005020105) #28	TIAL1 (ENSBIXG00005003333) #29	BAG3 (ENSBIXG00005020191) #30	INPP5F (ENSBIXG00005020287) #31	MCMBP (ENSBIXG00005020337) #32	SEC23IP (ENSBIXG00005003449) #33	PLPP4 (ENSBIXG00005020504) #34	WDR11 (ENSBIXG00005003481) #35	FGFR2 (ENSBIXG00005003546) #36	ATE1 (ENSBIXG00005021194) #37
Cow	MODERN SPECIES	18	PNLIPRP1 (ENSBTAG00000052800) #8	PNLIPRP2 (ENSBTAG00000000765) #9	C26H10orf82 (ENSBTAG00000013763) #10	HSPA12A (ENSBTAG00000013779) #11	ENO4 (ENSBTAG00000004330) #12	SHTN1 (ENSBTAG00000007578) #13	VAX1 (ENSBTAG00000013875) #14	KCNK18 (ENSBTAG00000015062) #15	SLC18A2 (ENSBTAG00000004739) #16	PDZD8 (ENSBTAG00000011401) #17	EMX2 (ENSBTAG00000003027) #18	RAB11FIP2 (ENSBTAG00000007460) #19	FAM204A (ENSBTAG00000005057) #20	PRLHR (ENSBTAG00000047842)	CACUL1 (ENSBTAG00000022808) #21	NANOS1 (ENSBTAG00000052883) #22	EIF3A (ENSBTAG00000002528) #23	DENND10 (ENSBTAG00000008729) #24	SFXN4 (ENSBTAG00000008730) #25	PRDX3 (ENSBTAG00000008731) #26	GRK5 (ENSBTAG00000007981) #27	RGS10 (ENSBTAG00000002647) #28	TIAL1 (ENSBTAG00000004080) #29	BAG3 (ENSBTAG00000013641) #30	INPP5F (ENSBTAG00000021801) #31	MCMBP (ENSBTAG00000009877) #32	ENSBTAG00000048455	SEC23IP (ENSBTAG00000007441) #33	PLPP4 (ENSBTAG00000032106) #34	ENSBTAG00000049781	WDR11 (ENSBTAG00000021540) #35
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Domestic yak	MODERN SPECIES	17	PNLIPRP2 (ENSBGRG00000016970) #9	C10orf82 (ENSBGRG00000017138) #10	HSPA12A (ENSBGRG00000017231) #11	ENO4 (ENSBGRG00000017722) #12	SHTN1 (ENSBGRG00000018522) #13	VAX1 (ENSBGRG00000019107) #14	KCNK18 (ENSBGRG00000019135) #15	SLC18A2 (ENSBGRG00000019173) #16	PDZD8 (ENSBGRG00000019307) #17	EMX2 (ENSBGRG00000019351) #18	ENSBGRG00000019389	RAB11FIP2 (ENSBGRG00000019403) #19	FAM204A (ENSBGRG00000019441) #20	PRLHR (ENSBGRG00000019512)	CACUL1 (ENSBGRG00000019540) #21	NANOS1 (ENSBGRG00000019738) #22	EIF3A (ENSBGRG00000019771) #23	DENND10 (ENSBGRG00000020185) #24	SFXN4 (ENSBGRG00000020303) #25	PRDX3 (ENSBGRG00000020425) #26	GRK5 (ENSBGRG00000020547) #27	RGS10 (ENSBGRG00000021293) #28	TIAL1 (ENSBGRG00000021417) #29	BAG3 (ENSBGRG00000021665) #30	INPP5F (ENSBGRG00000021737) #31	MCMBP (ENSBGRG00000022255) #32	ENSBGRG00000022579	SEC23IP (ENSBGRG00000022602) #33	ENSBGRG00000022938 #34	WDR11 (ENSBGRG00000023025) #35	FGFR2 (ENSBGRG00000023230) #36
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068.o #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Goat	MODERN SPECIES	18	PNLIPRP1 (ENSCHIG00000000787) #8	PNLIPRP2 (ENSCHIG00000011772) #9	C10orf82 (ENSCHIG00000021577) #10	HSPA12A (ENSCHIG00000002992) #11	ENO4 (ENSCHIG00000019329) #12	SHTN1 (ENSCHIG00000001689) #13	VAX1 (ENSCHIG00000001536) #14	KCNK18 (ENSCHIG00000013853) #15	SLC18A2 (ENSCHIG00000024050) #16	PDZD8 (ENSCHIG00000014429) #17	EMX2 (ENSCHIG00000023641) #18	RAB11FIP2 (ENSCHIG00000014924) #19	FAM204A (ENSCHIG00000022183) #20	PRLHR (ENSCHIG00000010388)	CACUL1 (ENSCHIG00000012763) #21	NANOS1 (ENSCHIG00000004298) #22	EIF3A (ENSCHIG00000016597) #23	DENND10 (ENSCHIG00000020782) #24	SFXN4 (ENSCHIG00000011807) #25	PRDX3 (ENSCHIG00000018632) #26	GRK5 (ENSCHIG00000003897) #27	RGS10 (ENSCHIG00000011045) #28	TIAL1 (ENSCHIG00000020810) #29	BAG3 (ENSCHIG00000019195) #30	INPP5F (ENSCHIG00000013653) #31	MCMBP (ENSCHIG00000016174) #32	SEC23IP (ENSCHIG00000014446) #33	ENSCHIG00000016797	PLPP4 (ENSCHIG00000013810) #34	ENSCHIG00000003717 #35	FGFR2 (ENSCHIG00000017963) #36
Rambouillet Sheep	MODERN SPECIES	14	PNLIPRP3 (ENSOARG00020024954)	PNLIP (ENSOARG00020024980) #7	ENSOARG00020024997 #8	PNLIPRP2 (ENSOARG00020025013) #9	ENO4 (ENSOARG00020025098) #12	SHTN1 (ENSOARG00020025278) #13	VAX1 (ENSOARG00020025434) #14	KCNK18 (ENSOARG00020025440) #15	SLC18A2 (ENSOARG00020025447) #16	PDZD8 (ENSOARG00020025466) #17	EMX2 (ENSOARG00020025474) #18	RAB11FIP2 (ENSOARG00020025481) #19	FAM204A (ENSOARG00020025494) #20	PRLHR (ENSOARG00020025500)	CACUL1 (ENSOARG00020025506) #21	NANOS1 (ENSOARG00020025516) #22	EIF3A (ENSOARG00020013670) #23	ENSOARG00020013945	DENND10 (ENSOARG00020013992) #24	SFXN4 (ENSOARG00020014267) #25	PRDX3 (ENSOARG00020014412) #26	GRK5 (ENSOARG00020014464) #27	ENSOARG00020014577	RGS10 (ENSOARG00020014603) #28	TIAL1 (ENSOARG00020014734) #29	BAG3 (ENSOARG00020014869) #30	INPP5F (ENSOARG00020014985) #31	MCMBP (ENSOARG00020017074) #32	SEC23IP (ENSOARG00020017426) #33	ENSOARG00020018045	ENSOARG00020018072
Siberian musk deer	MODERN SPECIES	1161	PNLIPRP2 (ENSMMSG00000016194) #9	C10orf82 (ENSMMSG00000018704) #10	HSPA12A (ENSMMSG00000018553) #11	ENO4 (ENSMMSG00000018395) #12	SHTN1 (ENSMMSG00000018262) #13	VAX1 (ENSMMSG00000018189) #14	KCNK18 (ENSMMSG00000018163) #15	SLC18A2 (ENSMMSG00000018068) #16	PDZD8 (ENSMMSG00000018042) #17	EMX2 (ENSMMSG00000018013) #18	RAB11FIP2 (ENSMMSG00000017974) #19	ENSMMSG00000017914 #20	PRLHR (ENSMMSG00000017899)	CACUL1 (ENSMMSG00000017863) #21	ENSMMSG00000017843	NANOS1 (ENSMMSG00000017830) #22	EIF3A (ENSMMSG00000017725) #23	DENND10 (ENSMMSG00000017673) #24	SFXN4 (ENSMMSG00000017594) #25	PRDX3 (ENSMMSG00000017559) #26	ENSMMSG00000017543	GRK5 (ENSMMSG00000017460) #27	RGS10 (ENSMMSG00000017368) #28	ENSMMSG00000017248 #29	BAG3 (ENSMMSG00000017210) #30	INPP5F (ENSMMSG00000016998) #31	MCMBP (ENSMMSG00000016915) #32	SEC23IP (ENSMMSG00000016779) #33	ENSMMSG00000016738	ENSMMSG00000016717	PLPP4 (ENSMMSG00000016645) #34
Yarkand deer	MODERN SPECIES	6	PNLIPRP1 (ENSCHYG00000018264) #8	PNLIPRP2 (ENSCHYG00000018622) #9	C10orf82 (ENSCHYG00000018736) #10	HSPA12A (ENSCHYG00000018845) #11	ENO4 (ENSCHYG00000019034) #12	SHTN1 (ENSCHYG00000020033) #13	ENSCHYG00000020376 #14	KCNK18 (ENSCHYG00000020450) #15	SLC18A2 (ENSCHYG00000020488) #16	PDZD8 (ENSCHYG00000020597) #17	EMX2 (ENSCHYG00000020758) #18	RAB11FIP2 (ENSCHYG00000020785) #19	FAM204A (ENSCHYG00000020842) #20	PRLHR (ENSCHYG00000020940)	CACUL1 (ENSCHYG00000006987) #21	NANOS1 (ENSCHYG00000007001) #22	EIF3A (ENSCHYG00000007026) #23	ENSCHYG00000007151	DENND10 (ENSCHYG00000007162) #24	SFXN4 (ENSCHYG00000007221) #25	PRDX3 (ENSCHYG00000007298) #26	GRK5 (ENSCHYG00000007383) #27	RGS10 (ENSCHYG00000007690) #28	TIAL1 (ENSCHYG00000007795) #29	BAG3 (ENSCHYG00000007937) #30	INPP5F (ENSCHYG00000008007) #31	ENSCHYG00000008228	MCMBP (ENSCHYG00000008251) #32	SEC23IP (ENSCHYG00000008365) #33	PLPP4 (ENSCHYG00000008482) #34	ENSCHYG00000008531
Cetacea	ANCESTRAL SPECIES	15	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00940000156234.f.b	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00390000009110.`b.a	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000166688.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000156234.f.b	ENSGT00950000182802.A.ab.a.b	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00390000009110.`b.a	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00940000166688.a	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000156234.f.b	ENSGT00950000182802.A.ab.a.b	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00940000166688.a	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000156234.f.b	ENSGT00950000182802.A.ab.a.b	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00940000165624	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.i #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00940000166688.a	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000156234.f.b	ENSGT00950000182802.A.ab.a.b	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00940000165624	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.i #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000166688.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Beluga whale	MODERN SPECIES	65	C10orf82 (ENSDLEG00000009378) #10	HSPA12A (ENSDLEG00000009301) #11	ENO4 (ENSDLEG00000009201) #12	SHTN1 (ENSDLEG00000009145) #13	VAX1 (ENSDLEG00000009134) #14	SLC18A2 (ENSDLEG00000009094) #16	ENSDLEG00000009071	ENSDLEG00000009049	PDZD8 (ENSDLEG00000008990) #17	EMX2 (ENSDLEG00000008964) #18	RAB11FIP2 (ENSDLEG00000008945) #19	FAM204A (ENSDLEG00000008925) #20	PRLHR (ENSDLEG00000008918)	CACUL1 (ENSDLEG00000008882) #21	ENSDLEG00000008849	NANOS1 (ENSDLEG00000008833) #22	EIF3A (ENSDLEG00000008753) #23	DENND10 (ENSDLEG00000008728) #24	SFXN4 (ENSDLEG00000008691) #25	ENSDLEG00000008666 #26	GRK5 (ENSDLEG00000008572) #27	RGS10 (ENSDLEG00000008548) #28	TIAL1 (ENSDLEG00000008473) #29	BAG3 (ENSDLEG00000008440) #30	ENSDLEG00000008409	INPP5F (ENSDLEG00000008316) #31	ENSDLEG00000008284	MCMBP (ENSDLEG00000008221) #32	SEC23IP (ENSDLEG00000008126) #33	PLPP4 (ENSDLEG00000008083) #34	WDR11 (ENSDLEG00000008040) #35
Narwhal	MODERN SPECIES	311	ENSMMNG00015019264 #10	HSPA12A (ENSMMNG00015019313) #11	ENO4 (ENSMMNG00015019430) #12	SHTN1 (ENSMMNG00015019587) #13	VAX1 (ENSMMNG00015019670) #14	SLC18A2 (ENSMMNG00015019729) #16	PDZD8 (ENSMMNG00015019756) #17	ENSMMNG00015019793	ENSMMNG00015019806	EMX2 (ENSMMNG00015019818) #18	RAB11FIP2 (ENSMMNG00015019844) #19	ENSMMNG00015019868 #20	PRLHR (ENSMMNG00015019892)	CACUL1 (ENSMMNG00015019910) #21	ENSMMNG00015019942	NANOS1 (ENSMMNG00015019960) #22	EIF3A (ENSMMNG00015019996) #23	DENND10 (ENSMMNG00015020070) #24	SFXN4 (ENSMMNG00015020102) #25	ENSMMNG00015020153 #26	GRK5 (ENSMMNG00015020199) #27	RGS10 (ENSMMNG00015020257) #28	TIAL1 (ENSMMNG00015020292) #29	BAG3 (ENSMMNG00015020314) #30	INPP5F (ENSMMNG00015020349) #31	ENSMMNG00015020417	MCMBP (ENSMMNG00015020433) #32	ENSMMNG00015020452	SEC23IP (ENSMMNG00015020467) #33	PLPP4 (ENSMMNG00015020521) #34	WDR11 (ENSMMNG00015020551) #35
Sperm whale	MODERN SPECIES	12	PLEKHA1 (ENSPCTG00005022364)	ENSPCTG00005022356	ATE1 (ENSPCTG00005022336) #37	FGFR2 (ENSPCTG00005022152) #36	WDR11 (ENSPCTG00005022064) #35	ENSPCTG00005022049	PLPP4 (ENSPCTG00005022038) #34	ENSPCTG00005022034	ENSPCTG00005022029	SEC23IP (ENSPCTG00005022014) #33	MCMBP (ENSPCTG00005022006) #32	ENSPCTG00005022003	INPP5F (ENSPCTG00005021967) #31	ENSPCTG00005021949	ENSPCTG00005021946	NANOS1 (ENSPCTG00005021940) #22	EIF3A (ENSPCTG00005021919) #23	FAM45A (ENSPCTG00005021910) #24	TIAL1 (ENSPCTG00005021889) #29	RGS10 (ENSPCTG00005021867) #28	ENSPCTG00005021857 #27	ENSPCTG00005021850	CACUL1 (ENSPCTG00005021835) #21	PRLHR (ENSPCTG00005021827)	FAM204A (ENSPCTG00005021821) #20	RAB11FIP2 (ENSPCTG00005021812) #19	EMX2 (ENSPCTG00005021799) #18	ENSPCTG00005021789	ENSPCTG00005021740	PDZD8 (ENSPCTG00005021711) #17	SLC18A2 (ENSPCTG00005021665) #16
Blue whale	MODERN SPECIES	7	ENO4 (ENSBMSG00010013969) #12	SHTN1 (ENSBMSG00010013846) #13	VAX1 (ENSBMSG00010013775) #14	KCNK18 (ENSBMSG00010013755) #15	SLC18A2 (ENSBMSG00010013731) #16	ENSBMSG00010013682	PDZD8 (ENSBMSG00010013584) #17	ENSBMSG00010013570	EMX2 (ENSBMSG00010013561) #18	RAB11FIP2 (ENSBMSG00010013550) #19	FAM204A (ENSBMSG00010013538) #20	PRLHR (ENSBMSG00010013527)	CACUL1 (ENSBMSG00010013512) #21	ENSBMSG00010013493	ENSBMSG00010013481	NANOS1 (ENSBMSG00010013472) #22	EIF3A (ENSBMSG00010013423) #23	DENND10 (ENSBMSG00010013398) #24	ENSBMSG00010013351 #25	PRDX3 (ENSBMSG00010013313) #26	GRK5 (ENSBMSG00010013213) #27	RGS10 (ENSBMSG00010013065) #28	TIAL1 (ENSBMSG00010013032) #29	BAG3 (ENSBMSG00010013012) #30	ENSBMSG00010012993	INPP5F (ENSBMSG00010012966) #31	ENSBMSG00010012916	MCMBP (ENSBMSG00010012893) #32	SEC23IP (ENSBMSG00010012870) #33	PLPP4 (ENSBMSG00010012851) #34	WDR11 (ENSBMSG00010012814) #35
Suina	ANCESTRAL SPECIES	6	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746.a #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Pig	MODERN SPECIES	5	PNLIPRP1 (ENSSSCG00000010659) #8	PNLIPRP2 (ENSSSCG00000010660) #9	HSPA12A (ENSSSCG00000036758) #11	ENO4 (ENSSSCG00000010664) #12	SHTN1 (ENSSSCG00000010665) #13	ENSSSCG00000042469	VAX1 (ENSSSCG00000010666) #14	SLC18A2 (ENSSSCG00000020671) #16	ENSSSCG00000010669 #17	EMX2 (ENSSSCG00000032558) #18	RAB11FIP2 (ENSSSCG00000010672) #19	FAM204A (ENSSSCG00000010674) #20	PRLHR (ENSSSCG00000037789)	CACUL1 (ENSSSCG00000038222) #21	ENSSSCG00000050381	NANOS1 (ENSSSCG00000040025) #22	EIF3A (ENSSSCG00000010679) #23	DENND10 (ENSSSCG00000010680) #24	SFXN4 (ENSSSCG00000010681) #25	PRDX3 (ENSSSCG00000010682) #26	GRK5 (ENSSSCG00000010683) #27	RGS10 (ENSSSCG00000039838) #28	TIAL1 (ENSSSCG00000010685) #29	BAG3 (ENSSSCG00000010686) #30	INPP5F (ENSSSCG00000010687) #31	MCMBP (ENSSSCG00000010688) #32	ENSSSCG00000056743	SEC23IP (ENSSSCG00000010690) #33	PLPP4 (ENSSSCG00000010691) #34	WDR11 (ENSSSCG00000010692) #35	ENSSSCG00000041462
Chacoan peccary	MODERN SPECIES	955	PNLIPRP2 (ENSCWAG00000019800) #9	C10orf82 (ENSCWAG00000019751) #10	HSPA12A (ENSCWAG00000019682) #11	ENO4 (ENSCWAG00000019534) #12	SHTN1 (ENSCWAG00000019029) #13	VAX1 (ENSCWAG00000018985) #14	KCNK18 (ENSCWAG00000018968) #15	SLC18A2 (ENSCWAG00000018909) #16	PDZD8 (ENSCWAG00000018891) #17	ENSCWAG00000018881	EMX2 (ENSCWAG00000018865) #18	RAB11FIP2 (ENSCWAG00000018850) #19	FAM204A (ENSCWAG00000018824) #20	PRLHR (ENSCWAG00000018814)	CACUL1 (ENSCWAG00000018778) #21	NANOS1 (ENSCWAG00000018760) #22	EIF3A (ENSCWAG00000018666) #23	DENND10 (ENSCWAG00000018618) #24	SFXN4 (ENSCWAG00000018584) #25	PRDX3 (ENSCWAG00000018552) #26	GRK5 (ENSCWAG00000018519) #27	RGS10 (ENSCWAG00000018430) #28	TIAL1 (ENSCWAG00000018390) #29	BAG3 (ENSCWAG00000018369) #30	INPP5F (ENSCWAG00000018266) #31	MCMBP (ENSCWAG00000018167) #32	SEC23IP (ENSCWAG00000018097) #33	PLPP4 (ENSCWAG00000018014) #34	ENSCWAG00000017992	WDR11 (ENSCWAG00000017961) #35	FGFR2 (ENSCWAG00000013844) #36
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Equus	ANCESTRAL SPECIES	9	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Donkey	MODERN SPECIES	11	PNLIPRP2 (ENSEASG00005014558) #9	C10orf82 (ENSEASG00005014549) #10	HSPA12A (ENSEASG00005014531) #11	ENSEASG00005025891	ENO4 (ENSEASG00005014520) #12	SHTN1 (ENSEASG00005014511) #13	VAX1 (ENSEASG00005014505) #14	KCNK18 (ENSEASG00005014501) #15	SLC18A2 (ENSEASG00005014491) #16	PDZD8 (ENSEASG00005014486) #17	EMX2 (ENSEASG00005014478) #18	RAB11FIP2 (ENSEASG00005014475) #19	FAM204A (ENSEASG00005014474) #20	PRLHR (ENSEASG00005014473)	CACUL1 (ENSEASG00005014469) #21	NANOS1 (ENSEASG00005024606) #22	EIF3A (ENSEASG00005014459) #23	DENND10 (ENSEASG00005014457) #24	SFXN4 (ENSEASG00005014456) #25	ENSEASG00005014455 #26	ENSEASG00005036811	GRK5 (ENSEASG00005014452) #27	RGS10 (ENSEASG00005038309) #28	TIAL1 (ENSEASG00005014449) #29	BAG3 (ENSEASG00005014448) #30	INPP5F (ENSEASG00005014445) #31	ENSEASG00005038260	MCMBP (ENSEASG00005014444) #32	SEC23IP (ENSEASG00005014443) #33	PLPP4 (ENSEASG00005014441) #34	WDR11 (ENSEASG00005014435) #35
Horse	MODERN SPECIES		PNLIPRP2 (ENSECAG00000008197) #9	C1H10orf82 (ENSECAG00000000731) #10	HSPA12A (ENSECAG00000016231) #11	ENSECAG00000049746	ENO4 (ENSECAG00000013196) #12	SHTN1 (ENSECAG00000007373) #13	VAX1 (ENSECAG00000023955) #14	KCNK18 (ENSECAG00000037881) #15	SLC18A2 (ENSECAG00000024054) #16	PDZD8 (ENSECAG00000023468) #17	EMX2 (ENSECAG00000031152) #18	RAB11FIP2 (ENSECAG00000019791) #19	FAM204A (ENSECAG00000019024) #20	PRLHR (ENSECAG00000003701)	CACUL1 (ENSECAG00000013139) #21	NANOS1 (ENSECAG00000003656) #22	EIF3A (ENSECAG00000021880) #23	DENND10 (ENSECAG00000013713) #24	SFXN4 (ENSECAG00000012309) #25	PRDX3 (ENSECAG00000017026) #26	ENSECAG00000035538	GRK5 (ENSECAG00000023764) #27	RGS10 (ENSECAG00000023632) #28	TIAL1 (ENSECAG00000009970) #29	ENSECAG00000032636	INPP5F (ENSECAG00000014941) #31	MCMBP (ENSECAG00000015061) #32	SEC23IP (ENSECAG00000000536) #33	PLPP4 (ENSECAG00000023526) #34	WDR11 (ENSECAG00000019673) #35	FGFR2 (ENSECAG00000013960) #36
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447.r #36	ENSGT00500000044926 #37
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447.r #36	ENSGT00500000044926 #37
Microbat	MODERN SPECIES	1282													RAB11FIP2 (ENSMLUG00000015200) #19	ENSMLUG00000027454 #20	CACUL1 (ENSMLUG00000002860) #21	ENSMLUG00000026243 #22	EIF3A (ENSMLUG00000005771) #23	DENND10 (ENSMLUG00000012854) #24	SFXN4 (ENSMLUG00000012860) #25	PRDX3 (ENSMLUG00000012871) #26	GRK5 (ENSMLUG00000003608) #27	ENSMLUG00000006062
Greater horseshoe bat	MODERN SPECIES	7	CCDC172 (ENSRFEG00010006298)	PNLIPRP3 (ENSRFEG00010006245)	PNLIP (ENSRFEG00010006169) #7	PNLIPRP1 (ENSRFEG00010006118) #8	PNLIPRP2 (ENSRFEG00010005991) #9	HSPA12A (ENSRFEG00010005760) #11	ENO4 (ENSRFEG00010005528) #12	SHTN1 (ENSRFEG00010005393) #13	VAX1 (ENSRFEG00010013860) #14	SLC18A2 (ENSRFEG00010013808) #16	PDZD8 (ENSRFEG00010013773) #17	EMX2 (ENSRFEG00010013738) #18	RAB11FIP2 (ENSRFEG00010013676) #19	PRLHR (ENSRFEG00010013380)	CACUL1 (ENSRFEG00010013309) #21	NANOS1 (ENSRFEG00010013284) #22	EIF3A (ENSRFEG00010013169) #23	DENND10 (ENSRFEG00010013102) #24	SFXN4 (ENSRFEG00010012886) #25	PRDX3 (ENSRFEG00010012853) #26	GRK5 (ENSRFEG00010012799) #27	RGS10 (ENSRFEG00010012645) #28	TIAL1 (ENSRFEG00010012554) #29	BAG3 (ENSRFEG00010012499) #30	INPP5F (ENSRFEG00010012275) #31	MCMBP (ENSRFEG00010012192) #32	SEC23IP (ENSRFEG00010012086) #33	PLPP4 (ENSRFEG00010011968) #34	WDR11 (ENSRFEG00010011888) #35	FGFR2 (ENSRFEG00010011408) #36	ATE1 (ENSRFEG00010011030) #37
Megabat	MODERN SPECIES	2960																NANOS1 (ENSPVAG00000003146) #22	EIF3A (ENSPVAG00000003148) #23	DENND10 (ENSPVAG00000003151) #24	ENSPVAG00000003156 #25	PRDX3 (ENSPVAG00000003158) #26	GRK5 (ENSPVAG00000003161) #27	RGS10 (ENSPVAG00000003163) #28
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
lion	MODERN SPECIES	11	PNLIPRP2 (ENSPLOG00000022356) #9	C10orf82 (ENSPLOG00000022337) #10	HSPA12A (ENSPLOG00000022316) #11	ENO4 (ENSPLOG00000022301) #12	SHTN1 (ENSPLOG00000022277) #13	VAX1 (ENSPLOG00000022240) #14	KCNK18 (ENSPLOG00000022215) #15	SLC18A2 (ENSPLOG00000022197) #16	PDZD8 (ENSPLOG00000022186) #17	EMX2 (ENSPLOG00000022174) #18	ENSPLOG00000022165	RAB11FIP2 (ENSPLOG00000022142) #19	FAM204A (ENSPLOG00000022124) #20	PRLHR (ENSPLOG00000022114)	CACUL1 (ENSPLOG00000022099) #21	NANOS1 (ENSPLOG00000022092) #22	EIF3A (ENSPLOG00000022036) #23	DENND10 (ENSPLOG00000022001) #24	SFXN4 (ENSPLOG00000021975) #25	PRDX3 (ENSPLOG00000021953) #26	GRK5 (ENSPLOG00000021943) #27	RGS10 (ENSPLOG00000021912) #28	TIAL1 (ENSPLOG00000021852) #29	BAG3 (ENSPLOG00000021815) #30	INPP5F (ENSPLOG00000021703) #31	MCMBP (ENSPLOG00000021644) #32	SEC23IP (ENSPLOG00000021541) #33	PLPP4 (ENSPLOG00000021510) #34	WDR11 (ENSPLOG00000021477) #35	FGFR2 (ENSPLOG00000020164) #36	ATE1 (ENSPLOG00000019598) #37
leopard	MODERN SPECIES	33	PNLIPRP2 (ENSPPRG00000024143) #9	C10orf82 (ENSPPRG00000024732) #10	HSPA12A (ENSPPRG00000024873) #11	ENO4 (ENSPPRG00000021113) #12	SHTN1 (ENSPPRG00000014439) #13	VAX1 (ENSPPRG00000012370) #14	KCNK18 (ENSPPRG00000012025) #15	SLC18A2 (ENSPPRG00000011245) #16	PDZD8 (ENSPPRG00000011062) #17	EMX2 (ENSPPRG00000010930) #18	RAB11FIP2 (ENSPPRG00000010519) #19	ENSPPRG00000010227	FAM204A (ENSPPRG00000010037) #20	PRLHR (ENSPPRG00000021289)	CACUL1 (ENSPPRG00000009658) #21	NANOS1 (ENSPPRG00000021230) #22	EIF3A (ENSPPRG00000008918) #23	DENND10 (ENSPPRG00000007455) #24	SFXN4 (ENSPPRG00000005852) #25	PRDX3 (ENSPPRG00000005382) #26	GRK5 (ENSPPRG00000005052) #27	RGS10 (ENSPPRG00000003836) #28	TIAL1 (ENSPPRG00000003226) #29	BAG3 (ENSPPRG00000002763) #30	INPP5F (ENSPPRG00000002675) #31	MCMBP (ENSPPRG00000001647) #32	SEC23IP (ENSPPRG00000022653) #33	PLPP4 (ENSPPRG00000023280) #34	WDR11 (ENSPPRG00000021913) #35	ENSPPRG00000017103 #36	ENSPPRG00000011499 #36
Cat	DUPLICATION
Cat	MODERN SPECIES	229																ENSFCAG00000040429 #22	ENSFCAG00000040477
Cat	MODERN SPECIES	242	PNLIPRP3 (ENSFCAG00000029381)	PNLIPRP1 (ENSFCAG00000001515) #8	HSPA12A (ENSFCAG00000001517) #11	ENO4 (ENSFCAG00000001518) #12	SHTN1 (ENSFCAG00000023428) #13	VAX1 (ENSFCAG00000036220) #14	KCNK18 (ENSFCAG00000035502) #15	SLC18A2 (ENSFCAG00000012991) #16	PDZD8 (ENSFCAG00000018713) #17	EMX2 (ENSFCAG00000042351) #18	ENSFCAG00000050192	RAB11FIP2 (ENSFCAG00000022481) #19	FAM204A (ENSFCAG00000013021) #20	PRLHR (ENSFCAG00000043088)	CACUL1 (ENSFCAG00000044111) #21	ENSFCAG00000051869 #22	EIF3A (ENSFCAG00000010656) #23	DENND10 (ENSFCAG00000010657) #24	SFXN4 (ENSFCAG00000010658) #25	PRDX3 (ENSFCAG00000010659) #26	GRK5 (ENSFCAG00000010660) #27	RGS10 (ENSFCAG00000026725) #28	TIAL1 (ENSFCAG00000031690) #29	BAG3 (ENSFCAG00000023182) #30	INPP5F (ENSFCAG00000024040) #31	MCMBP (ENSFCAG00000014907) #32	SEC23IP (ENSFCAG00000014908) #33	PLPP4 (ENSFCAG00000042026) #34	WDR11 (ENSFCAG00000014314) #35	FGFR2 (ENSFCAG00000003692) #36	ATE1 (ENSFCAG00000027935) #37
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000160632.d #7	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000166528.a.a	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Giant Panda	MODERN SPECIES	16	ENSAMEG00000013972 #8	PNLIPRP2 (ENSAMEG00000014004) #9	ENSAMEG00000028326	C10orf82 (ENSAMEG00000014023) #10	HSPA12A (ENSAMEG00000014024) #11	ENO4 (ENSAMEG00000014046) #12	SHTN1 (ENSAMEG00000014060) #13	KCNK18 (ENSAMEG00000014089) #15	SLC18A2 (ENSAMEG00000014094) #16	ENSAMEG00000014138 #17	EMX2 (ENSAMEG00000025286) #18	RAB11FIP2 (ENSAMEG00000009921) #19	FAM204A (ENSAMEG00000024923) #20	PRLHR (ENSAMEG00000020159)	CACUL1 (ENSAMEG00000009950) #21	ENSAMEG00000025767 #22	EIF3A (ENSAMEG00000009961) #23	DENND10 (ENSAMEG00000009999) #24	ENSAMEG00000010019 #25	PRDX3 (ENSAMEG00000010025) #26	GRK5 (ENSAMEG00000010049) #27	RGS10 (ENSAMEG00000010141) #28	TIAL1 (ENSAMEG00000010147) #29	BAG3 (ENSAMEG00000010175) #30	INPP5F (ENSAMEG00000010186) #31	MCMBP (ENSAMEG00000010208) #32	ENSAMEG00000001122	SEC23IP (ENSAMEG00000010251) #33	PLPP4 (ENSAMEG00000010299) #34	WDR11 (ENSAMEG00000010302) #35	FGFR2 (ENSAMEG00000010959) #36
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.n #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000163657	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.n #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00390000004380.e.a.a	ENSGT00940000163657.f	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Dog	MODERN SPECIES	20	PNLIPRP3 (ENSCAFG00845030979)	PNLIPRP1 (ENSCAFG00845030995) #8	C28H10orf82 (ENSCAFG00845031012) #10	HSPA12A (ENSCAFG00845031017) #11	ENO4 (ENSCAFG00845031032) #12	SHTN1 (ENSCAFG00845031041) #13	VAX1 (ENSCAFG00845031045) #14	KCNK18 (ENSCAFG00845031048) #15	SLC18A2 (ENSCAFG00845031051) #16	PDZD8 (ENSCAFG00845031054) #17	EMX2 (ENSCAFG00845031057) #18	RAB11FIP2 (ENSCAFG00845031060) #19	FAM204A (ENSCAFG00845031061) #20	PRLHR (ENSCAFG00845031063)	CACUL1 (ENSCAFG00845015577) #21	NANOS1 (ENSCAFG00845015640) #22	EIF3A (ENSCAFG00845015674) #23	DENND10 (ENSCAFG00845015834) #24	SFXN4 (ENSCAFG00845015969) #25	PRDX3 (ENSCAFG00845016072) #26	GRK5 (ENSCAFG00845016167) #27	RGS10 (ENSCAFG00845016371) #28	TIAL1 (ENSCAFG00845016533) #29	BAG3 (ENSCAFG00845016933) #30	SEC23IP (ENSCAFG00845017286) #31	MCMBP (ENSCAFG00845017945) #32	SEC23IP (ENSCAFG00845018243) #33	ENSCAFG00845018569	ENSCAFG00845018618	PLPP4 (ENSCAFG00845018703) #34	WDR11 (ENSCAFG00845018912) #35
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Glires	ANCESTRAL SPECIES	16	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Naked mole-rat female	MODERN SPECIES	4	ENO4 (ENSHGLG00000014174) #12	ENSHGLG00000014532 #13	VAX1 (ENSHGLG00000048594) #14	ENSHGLG00000045816	SLC18A2 (ENSHGLG00000012362) #16	PDZD8 (ENSHGLG00000012055) #17	EMX2 (ENSHGLG00000012841) #18	ENSHGLG00000037873	ENSHGLG00000021291	RAB11FIP2 (ENSHGLG00000010515) #19	ENSHGLG00000047764 #20	ENSHGLG00000040532	PRLHR (ENSHGLG00000009873)	CACUL1 (ENSHGLG00000009961) #21	ENSHGLG00000011185	NANOS1 (ENSHGLG00000045577) #22	EIF3A (ENSHGLG00000013260) #23	DENND10 (ENSHGLG00000010220) #24	ENSHGLG00000009711 #26	ENSHGLG00000011210	ENSHGLG00000038210 #27	GRK5 (ENSHGLG00000050923) #27	RGS10 (ENSHGLG00000037265) #28	ENSHGLG00000034213	TIAL1 (ENSHGLG00000013775) #29	ENSHGLG00000012192	BAG3 (ENSHGLG00000013505) #30	ENSHGLG00000042038	INPP5F (ENSHGLG00000009930) #31	ENSHGLG00000011466 #32	SEC23IP (ENSHGLG00000013752) #33
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Guinea pig	MODERN SPECIES	1	PNLIP (ENSCPOG00000013420) ##7	PNLIPRP2 (ENSCPOG00000003077) #9	C10orf82 (ENSCPOG00000003084) #10	HSPA12A (ENSCPOG00000003085) #11	ENO4 (ENSCPOG00000010978) #12	SHTN1 (ENSCPOG00000010984) #13	VAX1 (ENSCPOG00000000542) #14	KCNK18 (ENSCPOG00000003594) #15	SLC18A2 (ENSCPOG00000003595) #16	PDZD8 (ENSCPOG00000029989) #17	EMX2 (ENSCPOG00000003299) #18	RAB11FIP2 (ENSCPOG00000000453) #19	FAM204A (ENSCPOG00000034589) #20	PRLHR (ENSCPOG00000007186)	CACUL1 (ENSCPOG00000010902) #21	NANOS1 (ENSCPOG00000038609) #22	EIF3A (ENSCPOG00000015188) #23	DENND10 (ENSCPOG00000015190) #24	PRDX3 (ENSCPOG00000039588) #26	GRK5 (ENSCPOG00000007453) #27	RGS10 (ENSCPOG00000004325) #28	ENSCPOG00000006074	BAG3 (ENSCPOG00000007549) #30	INPP5F (ENSCPOG00000009019) #31	MCMBP (ENSCPOG00000009028) #32	SEC23IP (ENSCPOG00000004752) #33	PLPP4 (ENSCPOG00000012587) #34	WDR11 (ENSCPOG00000014291) #35	FGFR2 (ENSCPOG00000008833) #36	ATE1 (ENSCPOG00000025966) #37	NSMCE4A (ENSCPOG00000000625)
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000168364	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37	ENSGT00390000011476
Long-tailed chinchilla	MODERN SPECIES	138	PNLIPRP1 (ENSCLAG00000003362) #8	PNLIPRP2 (ENSCLAG00000003518) #9	C10orf82 (ENSCLAG00000003933) #10	HSPA12A (ENSCLAG00000004245) #11	ENO4 (ENSCLAG00000005176) #12	SHTN1 (ENSCLAG00000005361) #13	VAX1 (ENSCLAG00000004384) #14	ENSCLAG00000004441	SLC18A2 (ENSCLAG00000004559) #16	PDZD8 (ENSCLAG00000004722) #17	EMX2 (ENSCLAG00000004915) #18	RAB11FIP2 (ENSCLAG00000005056) #19	FAM204A (ENSCLAG00000005139) #20	PRLHR (ENSCLAG00000017763)	CACUL1 (ENSCLAG00000005363) #21	NANOS1 (ENSCLAG00000005574) #22	EIF3A (ENSCLAG00000008246) #23	DENND10 (ENSCLAG00000009118) #24	PRDX3 (ENSCLAG00000009194) #26
Degu	MODERN SPECIES	51	ENSODEG00000017629	VAX1 (ENSODEG00000017835) #14	ENSODEG00000017686	SLC18A2 (ENSODEG00000017927) #16	ENSODEG00000017676	ENSODEG00000017723	PDZD8 (ENSODEG00000017906) #17	EMX2 (ENSODEG00000017809) #18	RAB11FIP2 (ENSODEG00000017734) #19	ENSODEG00000017745 #20	ENSODEG00000017684	ENSODEG00000018333	ENSODEG00000017661	PRLHR (ENSODEG00000020548)	CACUL1 (ENSODEG00000017578) #21	NANOS1 (ENSODEG00000017556) #22	EIF3A (ENSODEG00000017775) #23	ENSODEG00000017551 #24	ENSODEG00000017739 #26	GRK5 (ENSODEG00000017760) #27	RGS10 (ENSODEG00000017673) #28	TIAL1 (ENSODEG00000017741) #29	ENSODEG00000020474	BAG3 (ENSODEG00000017665) #30	INPP5F (ENSODEG00000017771) #31	MCMBP (ENSODEG00000017666) #32	ENSODEG00000017627 #33	ENSODEG00000017568 #33	ENSODEG00000020513	ENSODEG00000017620	ENSODEG00000017622
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Eurasian red squirrel	MODERN SPECIES	13	HSPA12A (ENSSVLG00005003917) #11	ENO4 (ENSSVLG00005003808) #12	SHTN1 (ENSSVLG00005003571) #13	VAX1 (ENSSVLG00005003438) #14	ENSSVLG00005003406 #15	ENSSVLG00005003385 #15	ENSSVLG00005003368 #15	SLC18A2 (ENSSVLG00005003306) #16	PDZD8 (ENSSVLG00005003282) #17	EMX2 (ENSSVLG00005003262) #18	RAB11FIP2 (ENSSVLG00005003229) #19	ENSSVLG00005003202	ENSSVLG00005003176 #20	PRLHR (ENSSVLG00005003161)	CACUL1 (ENSSVLG00005003130) #21	NANOS1 (ENSSVLG00005003114) #22	EIF3A (ENSSVLG00005003063) #23	DENND10 (ENSSVLG00005003022) #24	SFXN4 (ENSSVLG00005002960) #25	PRDX3 (ENSSVLG00005002921) #26	GRK5 (ENSSVLG00005002880) #27	RGS10 (ENSSVLG00005002843) #28	ENSSVLG00005002763 #29	BAG3 (ENSSVLG00005002726) #30	INPP5F (ENSSVLG00005002590) #31	MCMBP (ENSSVLG00005002533) #32	SEC23IP (ENSSVLG00005002496) #33	PLPP4 (ENSSVLG00005002461) #34	WDR11 (ENSSVLG00005002429) #35	FGFR2 (ENSSVLG00005002254) #36	ENSSVLG00005002095
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602.g.a #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602.g.b #33	ENSGT00940000156602.g.a #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602.g.b #33	ENSGT00940000156602.g.a #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27
Chinese hamster chok1gshd	MODERN SPECIES	215	Pnliprp2 (ENSCGRG00001004161) #9	Hspa12a (ENSCGRG00001000532) #11	Eno4 (ENSCGRG00001020310) #12	Shtn1 (ENSCGRG00001018919) #13	Vax1 (ENSCGRG00001017524) #14	Kcnk18 (ENSCGRG00001016865) #15	Slc18a2 (ENSCGRG00001016186) #16	Pdzd8 (ENSCGRG00001015249) #17	Emx2 (ENSCGRG00001014676) #18	ENSCGRG00001014214	Rab11fip2 (ENSCGRG00001013387) #19	Fam204a (ENSCGRG00001012697) #20	ENSCGRG00001012074	Prlhr (ENSCGRG00001015600)	Cacul1 (ENSCGRG00001010443) #21	Nanos1 (ENSCGRG00001007664) #22	Eif3a (ENSCGRG00001003836) #23	Dennd10 (ENSCGRG00001016270) #24	Prdx3 (ENSCGRG00001015353) #26	Grk5 (ENSCGRG00001014639) #27	ENSCGRG00001001599
Golden Hamster	MODERN SPECIES	805	Pnliprp1 (ENSMAUG00000015056) #8	Pnliprp2 (ENSMAUG00000004154) #9	1700019N19Rik (ENSMAUG00000011699) #10	Hspa12a (ENSMAUG00000003739) #11	Eno4 (ENSMAUG00000009399) #12	ENSMAUG00000012535 #13	Vax1 (ENSMAUG00000010122) #14	Slc18a2 (ENSMAUG00000009506) #16	Pdzd8 (ENSMAUG00000012851) #17	Emx2 (ENSMAUG00000009270) #18	Rab11fip2 (ENSMAUG00000013610) #19	Fam204a (ENSMAUG00000008150) #20	Prlhr (ENSMAUG00000019749)	Cacul1 (ENSMAUG00000016607) #21	Eif3a (ENSMAUG00000012616) #23	Nanos1 (ENSMAUG00000021200) #22	Dennd10 (ENSMAUG00000015359) #24	Prdx3 (ENSMAUG00000021294) #26	Grk5 (ENSMAUG00000000694) #27	ENSMAUG00000021683	ENSMAUG00000016784	ENSMAUG00000004089	ENSMAUG00000001295
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27
Northern American deer mouse	MODERN SPECIES		Pnliprp1 (ENSPEMG00000008991) #8	Pnliprp2 (ENSPEMG00000015597) #9	1700019N19Rik (ENSPEMG00000005549) #10	Hspa12a (ENSPEMG00000002037) #11	Eno4 (ENSPEMG00000018141) #12	Shtn1 (ENSPEMG00000007069) #13	Vax1 (ENSPEMG00000008665) #14	Kcnk18 (ENSPEMG00000009989) #15	Slc18a2 (ENSPEMG00000008504) #16	Pdzd8 (ENSPEMG00000010555) #17	Emx2 (ENSPEMG00000017271) #18	Rab11fip2 (ENSPEMG00000000413) #19	Fam204a (ENSPEMG00000001885) #20	Prlhr (ENSPEMG00000014534)	Cacul1 (ENSPEMG00000028052) #21	Nanos1 (ENSPEMG00000019116) #22	Eif3a (ENSPEMG00000000086) #23	Dennd10 (ENSPEMG00000009587) #24	Prdx3 (ENSPEMG00000009413) #26	ENSPEMG00000000210	Grk5 (ENSPEMG00000017149) #27	Ablim1 (ENSPEMG00000016085)	Afap1l2 (ENSPEMG00000000090)	Vwa2 (ENSPEMG00000017216)	Tdrd1 (ENSPEMG00000004582)	Ccdc186 (ENSPEMG00000000425)	Adrb1 (ENSPEMG00000014645)	Nhlrc2 (ENSPEMG00000013954)	Dclre1a (ENSPEMG00000010861)	Plekhs1 (ENSPEMG00000000342)	Casp7 (ENSPEMG00000026293)
Prairie vole	MODERN SPECIES	16	Pnliprp1 (ENSMOCG00000009106) #8	Pnliprp2 (ENSMOCG00000009531) #9	1700019N19Rik (ENSMOCG00000021861) #10	Hspa12a (ENSMOCG00000000721) #11	Eno4 (ENSMOCG00000008352) #12	Shtn1 (ENSMOCG00000012289) #13	Vax1 (ENSMOCG00000008001) #14	Kcnk18 (ENSMOCG00000003123) #15	Slc18a2 (ENSMOCG00000013802) #16	Pdzd8 (ENSMOCG00000010922) #17	Emx2 (ENSMOCG00000019514) #18	Rab11fip2 (ENSMOCG00000004019) #19	ENSMOCG00000006709 #20	Prlhr (ENSMOCG00000001307)	Cacul1 (ENSMOCG00000005008) #21	Nanos1 (ENSMOCG00000007708) #22	Eif3a (ENSMOCG00000002406) #23	Dennd10 (ENSMOCG00000012284) #24	Prdx3 (ENSMOCG00000013290) #26	Grk5 (ENSMOCG00000001669) #27
Murinae	ANCESTRAL SPECIES		ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b
Mus	ANCESTRAL SPECIES		ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b.b #27	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b
Ryukyu mouse	MODERN SPECIES	10	Pnliprp1 (MGP_CAROLIEiJ_G0023105) #8	Pnliprp2 (MGP_CAROLIEiJ_G0023106) #9	1700019N19Rik (MGP_CAROLIEiJ_G0023107) #10	Hspa12a (MGP_CAROLIEiJ_G0023108) #11	Eno4 (MGP_CAROLIEiJ_G0023109) #12	Shtn1 (MGP_CAROLIEiJ_G0023110) #13	Vax1 (MGP_CAROLIEiJ_G0023111) #14	Kcnk18 (MGP_CAROLIEiJ_G0023112) #15	Slc18a2 (MGP_CAROLIEiJ_G0023113) #16	Pdzd8 (MGP_CAROLIEiJ_G0023114) #17	Emx2 (MGP_CAROLIEiJ_G0023115) #18	Rab11fip2 (MGP_CAROLIEiJ_G0023116) #19	Fam204a (MGP_CAROLIEiJ_G0023117) #20	Prlhr (MGP_CAROLIEiJ_G0023118)	MGP_CAROLIEiJ_G0023119 #21	Nanos1 (MGP_CAROLIEiJ_G0023120) #22	Eif3a (MGP_CAROLIEiJ_G0023121) #23	Dennd10 (MGP_CAROLIEiJ_G0023122) #24	Sfxn4 (MGP_CAROLIEiJ_G0023123) #25	Prdx3 (MGP_CAROLIEiJ_G0023124) #26	Grk5 (MGP_CAROLIEiJ_G0023125) #27	Zfp950 (MGP_CAROLIEiJ_G0023126)	Csf2ra (MGP_CAROLIEiJ_G0023127)
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b.b #27	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b
Mouse	MODERN SPECIES	10	Pnliprp1 (ENSMUSG00000042179) #8	Pnliprp2 (ENSMUSG00000025091) #9	1700019N19Rik (ENSMUSG00000026931) #10	Hspa12a (ENSMUSG00000025092) #11	Eno4 (ENSMUSG00000048029) #12	Shtn1 (ENSMUSG00000041362) #13	Vax1 (ENSMUSG00000006270) #14	Kcnk18 (ENSMUSG00000040901) #15	Slc18a2 (ENSMUSG00000025094) #16	Pdzd8 (ENSMUSG00000074746) #17	Emx2 (ENSMUSG00000043969) #18	Rab11fip2 (ENSMUSG00000040022) #19	Fam204a (ENSMUSG00000057858) #20	Prlhr (ENSMUSG00000045052)	Cacul1 (ENSMUSG00000033417) #21	Nanos1 (ENSMUSG00000072437) #22	Eif3a (ENSMUSG00000024991) #23	Dennd10 (ENSMUSG00000024993) #24	Sfxn4 (ENSMUSG00000063698) #25	Prdx3 (ENSMUSG00000024997) #26	Grk5 (ENSMUSG00000003228) #27	Zfp950 (ENSMUSG00000074733)	Gm7102 (ENSMUSG00000094649)	Csf2ra (ENSMUSG00000059326)
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b.b #27	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b
spretus	MODERN SPECIES	10	Pnliprp1 (MGP_SPRETEiJ_G0024026) #8	Pnliprp2 (MGP_SPRETEiJ_G0024027) #9	1700019N19Rik (MGP_SPRETEiJ_G0024028) #10	Hspa12a (MGP_SPRETEiJ_G0024029) #11	Eno4 (MGP_SPRETEiJ_G0024030) #12	Shtn1 (MGP_SPRETEiJ_G0024031) #13	Vax1 (MGP_SPRETEiJ_G0024032) #14	Kcnk18 (MGP_SPRETEiJ_G0024033) #15	Slc18a2 (MGP_SPRETEiJ_G0024034) #16	Pdzd8 (MGP_SPRETEiJ_G0024035) #17	Emx2 (MGP_SPRETEiJ_G0024036) #18	Rab11fip2 (MGP_SPRETEiJ_G0024037) #19	Fam204a (MGP_SPRETEiJ_G0024038) #20	Prlhr (MGP_SPRETEiJ_G0024039)	Cacul1 (MGP_SPRETEiJ_G0024040) #21	Nanos1 (MGP_SPRETEiJ_G0024041) #22	Eif3a (MGP_SPRETEiJ_G0024042) #23	Dennd10 (MGP_SPRETEiJ_G0024043) #24	Sfxn4 (MGP_SPRETEiJ_G0024044) #25	Prdx3 (MGP_SPRETEiJ_G0024045) #26	Grk5 (MGP_SPRETEiJ_G0024046) #27	Zfp950 (MGP_SPRETEiJ_G0024047)	Csf2ra (MGP_SPRETEiJ_G0024048)
Steppe mouse	MODERN SPECIES	38	1700019N19Rik (ENSMSIG00000028440) #10	Hspa12a (ENSMSIG00000028425) #11	Eno4 (ENSMSIG00000028394) #12	Shtn1 (ENSMSIG00000028359) #13	ENSMSIG00000028327	Vax1 (ENSMSIG00000028320) #14	ENSMSIG00000028314	Kcnk18 (ENSMSIG00000028309) #15	Slc18a2 (ENSMSIG00000028291) #16	Pdzd8 (ENSMSIG00000028285) #17	Emx2 (ENSMSIG00000028276) #18	Rab11fip2 (ENSMSIG00000028250) #19	Fam204a (ENSMSIG00000028227) #20	Prlhr (ENSMSIG00000028226)	Cacul1 (ENSMSIG00000028208) #21	Nanos1 (ENSMSIG00000028205) #22	Eif3a (ENSMSIG00000028178) #23	ENSMSIG00000028172	Dennd10 (ENSMSIG00000028163) #24	Sfxn4 (ENSMSIG00000028157) #25	Prdx3 (ENSMSIG00000028149) #26	ENSMSIG00000028146	Grk5 (ENSMSIG00000028137) #27	Zfp950 (ENSMSIG00000028121)
Shrew mouse	MODERN SPECIES		Pnliprp1 (MGP_PahariEiJ_G0014593) #8	Pnliprp2 (MGP_PahariEiJ_G0014594) #9	1700019N19Rik (MGP_PahariEiJ_G0014595) #10	Hspa12a (MGP_PahariEiJ_G0014596) #11	Eno4 (MGP_PahariEiJ_G0014597) #12	Shtn1 (MGP_PahariEiJ_G0014598) #13	Vax1 (MGP_PahariEiJ_G0014599) #14	Kcnk18 (MGP_PahariEiJ_G0014600) #15	Slc18a2 (MGP_PahariEiJ_G0014601) #16	Pdzd8 (MGP_PahariEiJ_G0014602) #17	Emx2 (MGP_PahariEiJ_G0014603) #18	Rab11fip2 (MGP_PahariEiJ_G0014604) #19	Fam204a (MGP_PahariEiJ_G0014605) #20	Prlhr (MGP_PahariEiJ_G0014606)	Cacul1 (MGP_PahariEiJ_G0014607) #21	Nanos1 (MGP_PahariEiJ_G0014608) #22	Eif3a (MGP_PahariEiJ_G0014609) #23	Dennd10 (MGP_PahariEiJ_G0014610) #24	Sfxn4 (MGP_PahariEiJ_G0014611) #25	Prdx3 (MGP_PahariEiJ_G0014612) #26	Grk5 (MGP_PahariEiJ_G0014613) #27	MGP_PahariEiJ_G0014614
Rat	MODERN SPECIES		Hspa12a (ENSRNOG00000018019) #11	ENSRNOG00000068353	Eno4 (ENSRNOG00000018310) #12	Shtn1 (ENSRNOG00000018350) #13	Vax1 (ENSRNOG00000008824) #14	Kcnk18 (ENSRNOG00000032706) #15	Slc18a2 (ENSRNOG00000008890) #16	Pdzd8 (ENSRNOG00000009460) #17	Emx2 (ENSRNOG00000009482) #18	Rab11fip2 (ENSRNOG00000009523) #19	Fam204a (ENSRNOG00000009830) #20	Prlhr (ENSRNOG00000009922)	Cacul1 (ENSRNOG00000009954) #21	LOC100359574 (ENSRNOG00000025154)	AABR07007121.1 (ENSRNOG00000033843)	Nanos1 (ENSRNOG00000025060) #22	Eif3a (ENSRNOG00000010117) #23	Dennd10 (ENSRNOG00000010230) #24	Sfxn4 (ENSRNOG00000036572) #25	Prdx3 (ENSRNOG00000010958) #26	Grk5 (ENSRNOG00000011439) #27	LOC102550291 (ENSRNOG00000032668)	LOC102550729 (ENSRNOG00000066489)	RGD1563099 (ENSRNOG00000051496)	Ces2i (ENSRNOG00000012034)	Ces2c (ENSRNOG00000036571)
Upper Galilee mountains blind mole rat	MODERN SPECIES	556	Pnliprp1 (ENSNGAG00000019325) #8	Pnliprp2 (ENSNGAG00000016195) #9	1700019N19Rik (ENSNGAG00000015530) #10	Hspa12a (ENSNGAG00000010265) #11	Eno4 (ENSNGAG00000018461) #12	Shtn1 (ENSNGAG00000011332) #13	Vax1 (ENSNGAG00000007068) #14	Kcnk18 (ENSNGAG00000005889) #15	Slc18a2 (ENSNGAG00000003157) #16	Pdzd8 (ENSNGAG00000021130) #17	Emx2 (ENSNGAG00000020570) #18	Rab11fip2 (ENSNGAG00000008604) #19	Fam204a (ENSNGAG00000001002) #20	Prlhr (ENSNGAG00000009274)	Cacul1 (ENSNGAG00000023911) #21	Nanos1 (ENSNGAG00000023539) #22	Eif3a (ENSNGAG00000019550) #23	Dennd10 (ENSNGAG00000017203) #24	Sfxn4 (ENSNGAG00000016136) #25	Prdx3 (ENSNGAG00000006625) #26	Grk5 (ENSNGAG00000022629) #27	Rgs10 (ENSNGAG00000022036) #28	Tial1 (ENSNGAG00000020427) #29	Bag3 (ENSNGAG00000018737) #30	Inpp5f (ENSNGAG00000016489) #31	Mcmbp (ENSNGAG00000001050) #32	ENSNGAG00000022868 #33	ENSNGAG00000022208 #33	Plpp4 (ENSNGAG00000018055) #34	Wdr11 (ENSNGAG00000001781) #35	Fgfr2 (ENSNGAG00000017837) #36
Kangaroo rat	MODERN SPECIES	377												Rab11fip2 (ENSDORG00000010895) #19	Fam204a (ENSDORG00000002074) #20	Prlhr (ENSDORG00000012693)	Cacul1 (ENSDORG00000028189) #21	Nanos1 (ENSDORG00000029226) #22	Eif3a (ENSDORG00000003481) #23	Dennd10 (ENSDORG00000026703) #24	Sfxn4 (ENSDORG00000004492) #25	Prdx3 (ENSDORG00000004623) #26	Grk5 (ENSDORG00000008496) #27	Rgs10 (ENSDORG00000003521) #28	Tial1 (ENSDORG00000010683) #29	Bag3 (ENSDORG00000011527) #30	Inpp5f (ENSDORG00000003458) #31	Mcmbp (ENSDORG00000008011) #32	ENSDORG00000027445 #33	ENSDORG00000008015 #33	Plpp4 (ENSDORG00000002515) #34	Wdr11 (ENSDORG00000003077) #35	Fgfr2 (ENSDORG00000005639) #36
Primates	ANCESTRAL SPECIES	16	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00910000148293	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00440000033468.c.b
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00910000148293	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00910000148293	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33
Hominidae	ANCESTRAL SPECIES	13	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00910000148293	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00910000148293	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Pan	ANCESTRAL SPECIES	16	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Chimpanzee	MODERN SPECIES	1	C10H10orf82 (ENSPTRG00000002973) #10	HSPA12A (ENSPTRG00000002974) #11	ENO4 (ENSPTRG00000002975) #12	SHTN1 (ENSPTRG00000002976) #13	VAX1 (ENSPTRG00000045431) #14	KCNK18 (ENSPTRG00000002978) #15	SLC18A2 (ENSPTRG00000002979) #16	PDZD8 (ENSPTRG00000002980) #17	EMX2 (ENSPTRG00000002981) #18	RAB11FIP2 (ENSPTRG00000002982) #19	ENSPTRG00000046689	FAM204A (ENSPTRG00000002984) #20	PRLHR (ENSPTRG00000002985)	ENSPTRG00000049526	CACUL1 (ENSPTRG00000002986) #21	NANOS1 (ENSPTRG00000013314) #22	EIF3A (ENSPTRG00000002988) #23	DENND10 (ENSPTRG00000002989) #24	SFXN4 (ENSPTRG00000002990) #25	PRDX3 (ENSPTRG00000002992) #26	GRK5 (ENSPTRG00000002993) #27	RGS10 (ENSPTRG00000002995) #28	TIAL1 (ENSPTRG00000002996) #29	ENSPTRG00000046181	ENSPTRG00000040193	BAG3 (ENSPTRG00000002998) #30	ENSPTRG00000051748	INPP5F (ENSPTRG00000022873) #31	MCMBP (ENSPTRG00000003000) #32	SEC23IP (ENSPTRG00000003001) #33	ENSPTRG00000048120
Human	MODERN SPECIES	1	PNLIPRP1 (ENSG00000187021) #8	PNLIPRP2 (ENSG00000266200) #9	C10orf82 (ENSG00000165863) #10	HSPA12A (ENSG00000165868) #11	ENO4 (ENSG00000188316) #12	SHTN1 (ENSG00000187164) #13	VAX1 (ENSG00000148704) #14	KCNK18 (ENSG00000186795) #15	SLC18A2 (ENSG00000165646) #16	PDZD8 (ENSG00000165650) #17	EMX2 (ENSG00000170370) #18	RAB11FIP2 (ENSG00000107560) #19	FAM204A (ENSG00000165669) #20	PRLHR (ENSG00000119973)	CACUL1 (ENSG00000151893) #21	NANOS1 (ENSG00000188613) #22	EIF3A (ENSG00000107581) #23	DENND10 (ENSG00000119979) #24	SFXN4 (ENSG00000183605) #25	PRDX3 (ENSG00000165672) #26	GRK5 (ENSG00000198873) #27	RGS10 (ENSG00000148908) #28	TIAL1 (ENSG00000151923) #29	BAG3 (ENSG00000151929) #30	INPP5F (ENSG00000198825) #31	MCMBP (ENSG00000197771) #32	SEC23IP (ENSG00000107651) #33	PLPP4 (ENSG00000203805) #34	WDR11 (ENSG00000120008) #35	FGFR2 (ENSG00000066468) #36	ATE1 (ENSG00000107669) #37
Orangutan	MODERN SPECIES	1	PNLIPRP2 (ENSPPYG00000002683) #9	C10orf82 (ENSPPYG00000002684) #10	HSPA12A (ENSPPYG00000002685) #11	ENO4 (ENSPPYG00000002686) #12	SHTN1 (ENSPPYG00000002687) #13	VAX1 (ENSPPYG00000002688) #14	KCNK18 (ENSPPYG00000002689) #15	SLC18A2 (ENSPPYG00000002690) #16	PDZD8 (ENSPPYG00000039905) #17	ENSPPYG00000031065 #18	RAB11FIP2 (ENSPPYG00000002692) #19	ENSPPYG00000002693	FAM204A (ENSPPYG00000002694) #20	PRLHR (ENSPPYG00000002695)	CACUL1 (ENSPPYG00000031630) #21	NANOS1 (ENSPPYG00000036681) #22	EIF3A (ENSPPYG00000002697) #23	DENND10 (ENSPPYG00000002698) #24	SFXN4 (ENSPPYG00000002699) #25	PRDX3 (ENSPPYG00000002700) #26	GRK5 (ENSPPYG00000002701) #27	ENSPPYG00000036653	ENSPPYG00000002702 #28	ENSPPYG00000037360	TIAL1 (ENSPPYG00000002703) #29	BAG3 (ENSPPYG00000002705) #30	ENSPPYG00000031900	INPP5F (ENSPPYG00000002706) #31	MCMBP (ENSPPYG00000002707) #32	SEC23IP (ENSPPYG00000002708) #33	ENSPPYG00000030022
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000173066	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Olive baboon	MODERN SPECIES	2	ENO4 (ENSPANG00000020737) #12	SHTN1 (ENSPANG00000020735) #13	ENSPANG00000047135	VAX1 (ENSPANG00000020704) #14	KCNK18 (ENSPANG00000020705) #15	SLC18A2 (ENSPANG00000020706) #16	PDZD8 (ENSPANG00000020702) #17	EMX2 (ENSPANG00000020616) #18	RAB11FIP2 (ENSPANG00000020617) #19	ENSPANG00000047195	ENSPANG00000037544	FAM204A (ENSPANG00000020620) #20	ENSPANG00000037634	PRLHR (ENSPANG00000035063)	CACUL1 (ENSPANG00000020622) #21	NANOS1 (ENSPANG00000000318) #22	EIF3A (ENSPANG00000020615) #23	DENND10 (ENSPANG00000020611) #24	SFXN4 (ENSPANG00000020612) #25	ENSPANG00000048950 #26	GRK5 (ENSPANG00000020570) #27	RGS10 (ENSPANG00000020561) #28	TIAL1 (ENSPANG00000020518) #29	BAG3 (ENSPANG00000020521) #30	INPP5F (ENSPANG00000020522) #31	MCMBP (ENSPANG00000020524) #32	SEC23IP (ENSPANG00000020516) #33	PLPP4 (ENSPANG00000020515) #34	WDR11 (ENSPANG00000020499) #35	ENSPANG00000038420	ENSPANG00000044749
Cercopithecinae_d	ANCESTRAL SPECIES	64	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000173066	ENSGT00940000159204 #30	ENSGT00940000154259.k.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Sooty mangabey	MODERN SPECIES	527	PNLIPRP2 (ENSCATG00000036134) #9	C10orf82 (ENSCATG00000019870) #10	HSPA12A (ENSCATG00000014903) #11	ENO4 (ENSCATG00000040247) #12	SHTN1 (ENSCATG00000018341) #13	VAX1 (ENSCATG00000036567) #14	KCNK18 (ENSCATG00000031895) #15	SLC18A2 (ENSCATG00000035848) #16	PDZD8 (ENSCATG00000036913) #17	EMX2 (ENSCATG00000038621) #18	RAB11FIP2 (ENSCATG00000040177) #19	ENSCATG00000013004	FAM204A (ENSCATG00000040275) #20	PRLHR (ENSCATG00000016413)	CACUL1 (ENSCATG00000021798) #21	NANOS1 (ENSCATG00000000994) #22	EIF3A (ENSCATG00000037599) #23	DENND10 (ENSCATG00000044731) #24	SFXN4 (ENSCATG00000038203) #25	PRDX3 (ENSCATG00000041288) #26	GRK5 (ENSCATG00000025277) #27	RGS10 (ENSCATG00000032717) #28	TIAL1 (ENSCATG00000043838) #29	ENSCATG00000042161	BAG3 (ENSCATG00000043521) #30	ENSCATG00000036096	INPP5F (ENSCATG00000016832) #31	MCMBP (ENSCATG00000035237) #32	SEC23IP (ENSCATG00000031879) #33	ENSCATG00000039059	PLPP4 (ENSCATG00000008532) #34
Macaca	ANCESTRAL SPECIES	11	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000016475.e.a.a.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Pig-tailed macaque	MODERN SPECIES	90	C10orf82 (ENSMNEG00000031041) #10	HSPA12A (ENSMNEG00000035966) #11	ENO4 (ENSMNEG00000038465) #12	SHTN1 (ENSMNEG00000023707) #13	VAX1 (ENSMNEG00000042756) #14	KCNK18 (ENSMNEG00000037673) #15	SLC18A2 (ENSMNEG00000008691) #16	PDZD8 (ENSMNEG00000045026) #17	EMX2 (ENSMNEG00000027592) #18	RAB11FIP2 (ENSMNEG00000032231) #19	ENSMNEG00000032884	FAM204A (ENSMNEG00000042700) #20	PRLHR (ENSMNEG00000036983)	ENSMNEG00000029432	CACUL1 (ENSMNEG00000035853) #21	NANOS1 (ENSMNEG00000022527) #22	EIF3A (ENSMNEG00000018271) #23	ENSMNEG00000036385 #24	SFXN4 (ENSMNEG00000041851) #25	ENSMNEG00000043574 #26	GRK5 (ENSMNEG00000041526) #27	RGS10 (ENSMNEG00000038381) #28	TIAL1 (ENSMNEG00000032245) #29	ENSMNEG00000039985	BAG3 (ENSMNEG00000042888) #30	INPP5F (ENSMNEG00000032634) #31	MCMBP (ENSMNEG00000039601) #32	SEC23IP (ENSMNEG00000045086) #33	PLPP4 (ENSMNEG00000036322) #34
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161627.a.a.a.a.b.a.a.b.b.a.b	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000166143.A.a.b.a.a.a.a	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978.q.a.a #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT01100000263508.A.d.e.b.a.c.b.c.a.b.a.a.b.a	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00390000012433.a.a.a.a.b	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.a.c.a	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Rhesus	MODERN SPECIES	19	SHTN1 (ENSMMUG00000007578) #13	ENSMMUG00000050291	VAX1 (ENSMMUG00000059146) #14	KCNK18 (ENSMMUG00000061100) #15	SLC18A2 (ENSMMUG00000014817) #16	PDZD8 (ENSMMUG00000053348) #17	EMX2 (ENSMMUG00000060255) #18	ENSMMUG00000062119	RAB11FIP2 (ENSMMUG00000021805) #19	ENSMMUG00000041447	FAM204A (ENSMMUG00000012741) #20	PRLHR (ENSMMUG00000052816)	CACUL1 (ENSMMUG00000016370) #21	ENSMMUG00000062698	ENSMMUG00000061613	NANOS1 (ENSMMUG00000048654) #22	EIF3A (ENSMMUG00000008994) #23	DENND10 (ENSMMUG00000008289) #24	SFXN4 (ENSMMUG00000008291) #25	PRDX3 (ENSMMUG00000008294) #26	ENSMMUG00000063441	GRK5 (ENSMMUG00000004596) #27	RGS10 (ENSMMUG00000021610) #28	ENSMMUG00000054942	TIAL1 (ENSMMUG00000001472) #29	ENSMMUG00000051594	ENSMMUG00000049613	BAG3 (ENSMMUG00000000798) #30	INPP5F (ENSMMUG00000009558) #31	MCMBP (ENSMMUG00000009559) #32	ENSMMUG00000065302
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00910000148293	ENSGT00940000161426 #28	ENSGT00910000148125	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32
Cebidae	ANCESTRAL SPECIES	17	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00910000148125	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000154259.k.a.a	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33
Marmoset	MODERN SPECIES	3	HSPA12A (ENSCJAG00000019440) #11	ENO4 (ENSCJAG00000019455) #12	SHTN1 (ENSCJAG00000019457) #13	VAX1 (ENSCJAG00000019496) #14	KCNK18 (ENSCJAG00000019505) #15	SLC18A2 (ENSCJAG00000019511) #16	PDZD8 (ENSCJAG00000019527) #17	EMX2 (ENSCJAG00000038805) #18	RAB11FIP2 (ENSCJAG00000019543) #19	FAM204A (ENSCJAG00000019565) #20	ENSCJAG00000073481	ENSCJAG00000079572	PRLHR (ENSCJAG00000019575)	CACUL1 (ENSCJAG00000019578) #21	ENSCJAG00000063855	NANOS1 (ENSCJAG00000044351) #22	EIF3A (ENSCJAG00000019595) #23	DENND10 (ENSCJAG00000019618) #24	SFXN4 (ENSCJAG00000034798) #25	PRDX3 (ENSCJAG00000019636) #26	GRK5 (ENSCJAG00000019648) #27	RGS10 (ENSCJAG00000019675) #28	ENSCJAG00000061556	TIAL1 (ENSCJAG00000019682) #29	ENSCJAG00000059975	ENSCJAG00000069509	ENSCJAG00000086412	SEC23IP (ENSCJAG00000019189) #33	MCMBP (ENSCJAG00000020390) #32	INPP5F (ENSCJAG00000020379) #31	ENSCJAG00000020378
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00910000147822	ENSGT00940000158482 #19	ENSGT00390000010476	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.r #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00910000148125	ENSGT00910000147084	ENSGT00940000160482 #29	ENSGT00500000044913.b	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34
Capuchin	MODERN SPECIES	406								SLC18A2 (ENSCCAG00000034263) #16	PDZD8 (ENSCCAG00000022849) #17	EMX2 (ENSCCAG00000034395) #18	RAB11FIP2 (ENSCCAG00000026414) #19	ENSCCAG00000033561	FAM204A (ENSCCAG00000037059) #20	CACUL1 (ENSCCAG00000028067) #21	ENSCCAG00000014873	NANOS1 (ENSCCAG00000009164) #22	EIF3A (ENSCCAG00000031764) #23	DENND10 (ENSCCAG00000026121) #24	SFXN4 (ENSCCAG00000026727) #25	PRDX3 (ENSCCAG00000035710) #26	GRK5 (ENSCCAG00000030340) #27	RGS10 (ENSCCAG00000021937) #28	ENSCCAG00000026113	ENSCCAG00000020677	TIAL1 (ENSCCAG00000002561) #29	ENSCCAG00000016611	BAG3 (ENSCCAG00000037916) #30	ENSCCAG00000002687	ENSCCAG00000027103	INPP5F (ENSCCAG00000007215) #31	MCMBP (ENSCCAG00000025423) #32
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482.n #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482.n #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Lemuriformes_a	ANCESTRAL SPECIES	42	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482.n #19	ENSGT00390000008978 #20	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Coquerels sifaka	MODERN SPECIES	258						ENO4 (ENSPCOG00000016591) #12	SHTN1 (ENSPCOG00000026334) #13	VAX1 (ENSPCOG00000027093) #14	KCNK18 (ENSPCOG00000020687) #15	SLC18A2 (ENSPCOG00000024529) #16	PDZD8 (ENSPCOG00000007150) #17	EMX2 (ENSPCOG00000026272) #18	RAB11FIP2 (ENSPCOG00000024340) #19	FAM204A (ENSPCOG00000022324) #20	CACUL1 (ENSPCOG00000020700) #21	NANOS1 (ENSPCOG00000009467) #22	EIF3A (ENSPCOG00000026400) #23	DENND10 (ENSPCOG00000000559) #24	SFXN4 (ENSPCOG00000027384) #25	PRDX3 (ENSPCOG00000024919) #26	GRK5 (ENSPCOG00000022845) #27	RGS10 (ENSPCOG00000020094) #28	TIAL1 (ENSPCOG00000018990) #29	BAG3 (ENSPCOG00000027192) #30	INPP5F (ENSPCOG00000015152) #31	MCMBP (ENSPCOG00000020444) #32	PLPP4 (ENSPCOG00000025706) #34	WDR11 (ENSPCOG00000019354) #35	FGFR2 (ENSPCOG00000027873) #36	ATE1 (ENSPCOG00000026224) #37	NSMCE4A (ENSPCOG00000011420)
Greater bamboo lemur	MODERN SPECIES	193																NANOS1 (ENSPSMG00000011420) #22	EIF3A (ENSPSMG00000011410) #23	DENND10 (ENSPSMG00000011392) #24	SFXN4 (ENSPSMG00000011378) #25	PRDX3 (ENSPSMG00000011358) #26	GRK5 (ENSPSMG00000011313) #27	ENSPSMG00000011218	TIAL1 (ENSPSMG00000011113) #29	BAG3 (ENSPSMG00000010989) #30	INPP5F (ENSPSMG00000010892) #31	MCMBP (ENSPSMG00000010773) #32	SEC23IP (ENSPSMG00000010732) #33	PLPP4 (ENSPSMG00000010705) #34	WDR11 (ENSPSMG00000010687) #35	FGFR2 (ENSPSMG00000009785) #36	ATE1 (ENSPSMG00000009100) #37
Bushbaby	MODERN SPECIES	136	PNLIPRP1 (ENSOGAG00000010151) #8	PNLIPRP2 (ENSOGAG00000010160) #9	C10orf82 (ENSOGAG00000010164) #10	HSPA12A (ENSOGAG00000010167) #11	ENO4 (ENSOGAG00000003444) #12	SHTN1 (ENSOGAG00000003447) #13	VAX1 (ENSOGAG00000030974) #14	KCNK18 (ENSOGAG00000007264) #15	SLC18A2 (ENSOGAG00000034086) #16	PDZD8 (ENSOGAG00000028529) #17	EMX2 (ENSOGAG00000007277) #18	RAB11FIP2 (ENSOGAG00000012716) #19	FAM204A (ENSOGAG00000028541) #20	PRLHR (ENSOGAG00000025256)	CACUL1 (ENSOGAG00000006769) #21	NANOS1 (ENSOGAG00000033947) #22	EIF3A (ENSOGAG00000004580) #23	DENND10 (ENSOGAG00000002070) #24	ENSOGAG00000027987	ENSOGAG00000002074 #26	GRK5 (ENSOGAG00000002075) #27	RGS10 (ENSOGAG00000030571) #28	TIAL1 (ENSOGAG00000011417) #29	ENSOGAG00000011419	BAG3 (ENSOGAG00000011421) #30	INPP5F (ENSOGAG00000009706) #31	MCMBP (ENSOGAG00000009714) #32	SEC23IP (ENSOGAG00000004948) #33	PLPP4 (ENSOGAG00000016998) #34	WDR11 (ENSOGAG00000012465) #35	FGFR2 (ENSOGAG00000012206) #36
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00940000160632 #7	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00940000163197	ENSGT00940000160632 #7	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00940000163197	ENSGT00940000160632 #7	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26
Hyrax	MODERN SPECIES	6644																NANOS1 (ENSPCAG00000006942) #22	EIF3A (ENSPCAG00000006974) #23
Xenarthra	ANCESTRAL SPECIES	934																ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00390000014431 #24	ENSGT01030000234641.a.b #25	ENSGT00940000160702.b #27
Armadillo	MODERN SPECIES	1708																NANOS1 (ENSDNOG00000048482) #22	EIF3A (ENSDNOG00000007674) #23	DENND10 (ENSDNOG00000007688) #24	ENSDNOG00000041625	SFXN4 (ENSDNOG00000001352) #25	GRK5 (ENSDNOG00000044991) #27
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000157351.j	ENSGT00390000004068 #35
Opossum	MODERN SPECIES		PNLIPRP2 (ENSMODG00000009519) #9	ENSMODG00000009505 #10	HSPA12A (ENSMODG00000009501) #11	ENO4 (ENSMODG00000009486) #12	ENSMODG00000009479	SHTN1 (ENSMODG00000009476) #13	VAX1 (ENSMODG00000009428) #14	SLC18A2 (ENSMODG00000009424) #16	PDZD8 (ENSMODG00000009394) #17	EMX2 (ENSMODG00000009388) #18	RAB11FIP2 (ENSMODG00000009385) #19	ENSMODG00000009378 #20	ENSMODG00000009370	CACUL1 (ENSMODG00000009365) #21	ENSMODG00000009342	NANOS1 (ENSMODG00000009319) #22	EIF3A (ENSMODG00000009316) #23	ENSMODG00000009292	ENSMODG00000009286 #26	GRK5 (ENSMODG00000009266) #27	ENSMODG00000024855	RGS10 (ENSMODG00000047360) #28	ENSMODG00000008865	BAG3 (ENSMODG00000008764) #30	INPP5F (ENSMODG00000008751) #31	MCMBP (ENSMODG00000008714) #32	SEC23IP (ENSMODG00000008685) #33	ENSMODG00000038446	PLPP4 (ENSMODG00000008644) #34	ENSMODG00000008634	ENSMODG00000039409
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000157351.j	ENSGT00390000004068 #35
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000157351.j	ENSGT00390000004068 #35
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000162375 #8	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204.e #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00940000157351.j	ENSGT00390000004068 #35
Common wonbat	MODERN SPECIES	581	ENSVURG00010024983 #8	PNLIPRP2 (ENSVURG00010024981) #9	ENSVURG00010024980 #10	HSPA12A (ENSVURG00010024978) #11	SHTN1 (ENSVURG00010024967) #13	VAX1 (ENSVURG00010024965) #14	SLC18A2 (ENSVURG00010024964) #16	PDZD8 (ENSVURG00010024963) #17	EMX2 (ENSVURG00010024960) #18	ENSVURG00010024959	ENSVURG00010024958	RAB11FIP2 (ENSVURG00010024955) #19	FAM204A (ENSVURG00010024953) #20	ENSVURG00010024951	CACUL1 (ENSVURG00010024948) #21	NANOS1 (ENSVURG00010024946) #22	EIF3A (ENSVURG00010024940) #23	ENSVURG00010024938	ENSVURG00010024935 #25	PRDX3 (ENSVURG00010024932) #26	ENSVURG00010024931	GRK5 (ENSVURG00010024930) #27	RGS10 (ENSVURG00010024927) #28	TIAL1 (ENSVURG00010024923) #29
koala	MODERN SPECIES	30	ENSPCIG00000022379 #10	HSPA12A (ENSPCIG00000022386) #11	ENO4 (ENSPCIG00000022397) #12	SHTN1 (ENSPCIG00000022403) #13	ENSPCIG00000022408	VAX1 (ENSPCIG00000034129) #14	ENSPCIG00000001543 #15	SLC18A2 (ENSPCIG00000001483) #16	PDZD8 (ENSPCIG00000001428) #17	EMX2 (ENSPCIG00000001396) #18	RAB11FIP2 (ENSPCIG00000036625) #19	ENSPCIG00000019513	FAM204A (ENSPCIG00000028435) #20	ENSPCIG00000028430	CACUL1 (ENSPCIG00000028427) #21	ENSPCIG00000028425 #22	EIF3A (ENSPCIG00000028414) #23	ENSPCIG00000028412	ENSPCIG00000035490	ENSPCIG00000028409 #25	PRDX3 (ENSPCIG00000028403) #26	GRK5 (ENSPCIG00000003189) #27	RGS10 (ENSPCIG00000003153) #28	TIAL1 (ENSPCIG00000003120) #29	ENSPCIG00000003103 #30	INPP5F (ENSPCIG00000003062) #31	MCMBP (ENSPCIG00000003033) #32	SEC23IP (ENSPCIG00000003012) #33	PLPP4 (ENSPCIG00000030825) #34	ENSPCIG00000019316	WDR11 (ENSPCIG00000004026) #35
Tasmanian devil	MODERN SPECIES	1	PNLIPRP2 (ENSSHAG00000017796) #9	ENSSHAG00000017768 #10	HSPA12A (ENSSHAG00000017617) #11	ENO4 (ENSSHAG00000017362) #12	SHTN1 (ENSSHAG00000017253) #13	ENSSHAG00000028544	VAX1 (ENSSHAG00000022322) #14	ENSSHAG00000016715 #15	SLC18A2 (ENSSHAG00000016512) #16	PDZD8 (ENSSHAG00000031609) #17	EMX2 (ENSSHAG00000015725) #18	RAB11FIP2 (ENSSHAG00000013400) #19	ENSSHAG00000011601 #20	ENSSHAG00000026913	CACUL1 (ENSSHAG00000007970) #21	NANOS1 (ENSSHAG00000029338) #22	EIF3A (ENSSHAG00000001347) #23	ENSSHAG00000014680	ENSSHAG00000014575 #25	PRDX3 (ENSSHAG00000014541) #26	GRK5 (ENSSHAG00000013446) #27	RGS10 (ENSSHAG00000024740) #28	TIAL1 (ENSSHAG00000012508) #29	BAG3 (ENSSHAG00000012049) #30	INPP5F (ENSSHAG00000010978) #31	MCMBP (ENSSHAG00000010768) #32	SEC23IP (ENSSHAG00000010548) #33	PLPP4 (ENSSHAG00000022918) #34	ENSSHAG00000013721	WDR11 (ENSSHAG00000012828) #35	FGFR2 (ENSSHAG00000006217) #36
Sauria	ANCESTRAL SPECIES	8	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000155139.i.a #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.g #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000155139.i.a #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.g #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
painted turtle	MODERN SPECIES	15	ENSCPBG00000002512 #9	ENSCPBG00000002490 #10	HSPA12A (ENSCPBG00000002450) #11	ENO4 (ENSCPBG00000002420) #12	SHTN1 (ENSCPBG00000002394) #13	VAX1 (ENSCPBG00000002374) #14	KCNK18 (ENSCPBG00000002360) #15	SLC18A2 (ENSCPBG00000002329) #16	PDZD8 (ENSCPBG00000002285) #17	EMX2 (ENSCPBG00000002268) #18	RAB11FIP2 (ENSCPBG00000002254) #19	ENSCPBG00000002230 #20	ENSCPBG00000002224	PRLHR (ENSCPBG00000002209)	CACUL1 (ENSCPBG00000002191) #21	NANOS1 (ENSCPBG00000002172) #22	EIF3A (ENSCPBG00000001266) #23	ENSCPBG00000001216	SFXN4 (ENSCPBG00000001202) #25	PRDX3 (ENSCPBG00000001195) #26	GRK5 (ENSCPBG00000001153) #27	RGS10 (ENSCPBG00000001134) #28	TIAL1 (ENSCPBG00000001103) #29	BAG3 (ENSCPBG00000001092) #30	PLEKHA1 (ENSCPBG00000001016)	HTRA1 (ENSCPBG00000000966)	ENSCPBG00000000282	ENSCPBG00000000175	ENSCPBG00000000160	ENSCPBG00000000152	C10orf88 (ENSCPBG00000000128)
Three-toed box turtle	MODERN SPECIES	39	ENSTMTG00000017257 #9	ENSTMTG00000017368 #9	HSPA12A (ENSTMTG00000017513) #11	ENO4 (ENSTMTG00000017530) #12	SHTN1 (ENSTMTG00000017571) #13	VAX1 (ENSTMTG00000017611) #14	ENSTMTG00000017617	SLC18A2 (ENSTMTG00000017630) #16	PDZD8 (ENSTMTG00000017682) #17	EMX2 (ENSTMTG00000017701) #18	RAB11FIP2 (ENSTMTG00000017710) #19	FAM204A (ENSTMTG00000017723) #20	ENSTMTG00000017739	PRLHR (ENSTMTG00000017752)	CACUL1 (ENSTMTG00000017777) #21	NANOS1 (ENSTMTG00000017785) #22	EIF3A (ENSTMTG00000017793) #23	ENSTMTG00000017839	SFXN4 (ENSTMTG00000017883) #25	PRDX3 (ENSTMTG00000017906) #26	GRK5 (ENSTMTG00000017948) ##27	RGS10 (ENSTMTG00000018181) #28	TIAL1 (ENSTMTG00000018217) #29	ENSTMTG00000018249 #30	ENSTMTG00000018261 #30	INPP5F (ENSTMTG00000018304) #31	MCMBP (ENSTMTG00000018812) #32	SEC23IP (ENSTMTG00000018842) #33	PLPP4 (ENSTMTG00000018885) #34	WDR11 (ENSTMTG00000018901) #35	FGFR2 (ENSTMTG00000018950) #36
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i.a #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b.g #26	ENSGT00940000160702.a.b ##27	ENSGT00940000160702.a.a ##27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Abingdon island giant tortoise	MODERN SPECIES	754			ENO4 (ENSCABG00000009775) #12	SHTN1 (ENSCABG00000009767) #13	VAX1 (ENSCABG00000009765) #14	KCNK18 (ENSCABG00000009763) #15	SLC18A2 (ENSCABG00000009726) #16	PDZD8 (ENSCABG00000009724) #17	EMX2 (ENSCABG00000009722) #18	RAB11FIP2 (ENSCABG00000009721) #19	ENSCABG00000009720	FAM204A (ENSCABG00000009718) #20	ENSCABG00000009716	CACUL1 (ENSCABG00000009715) #21	ENSCABG00000009713	NANOS1 (ENSCABG00000009711) #22	EIF3A (ENSCABG00000009703) #23	ENSCABG00000009686	SFXN4 (ENSCABG00000009684) #25	ENSCABG00000009682 #26	GRK5 (ENSCABG00000009676) ##27
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005019486 #9	ENSGEVG00005019508 #9	ENSGEVG00005019542 #9	HSPA12A (ENSGEVG00005019577) #11	ENO4 (ENSGEVG00005019604) #12	SHTN1 (ENSGEVG00005019656) #13	VAX1 (ENSGEVG00005019680) #14	ENSGEVG00005019691	SLC18A2 (ENSGEVG00005019697) #16	PDZD8 (ENSGEVG00005019710) #17	EMX2 (ENSGEVG00005019717) #18	RAB11FIP2 (ENSGEVG00005019720) #19	FAM204A (ENSGEVG00005019728) #20	ENSGEVG00005019732	CACUL1 (ENSGEVG00005019742) #21	NANOS1 (ENSGEVG00005019751) #22	EIF3A (ENSGEVG00005019761) #23	ENSGEVG00005019776	SFXN4 (ENSGEVG00005019784) #25	PRDX3 (ENSGEVG00005019794) #26	ENSGEVG00005019814 ##27	ENSGEVG00005019838 ##27	RGS10 (ENSGEVG00005019839) #28	TIAL1 (ENSGEVG00005019870) #29	BAG3 (ENSGEVG00005019883) #30	INPP5F (ENSGEVG00005019898) #31	MCMBP (ENSGEVG00005019925) #32	SEC23IP (ENSGEVG00005019936) #33	PLPP4 (ENSGEVG00005019965) #34	WDR11 (ENSGEVG00005019974) #35	ENSGEVG00005019994
Chinese turtle	MODERN SPECIES	154		ENSPSIG00000012918 #11	ENO4 (ENSPSIG00000013484) #12	SHTN1 (ENSPSIG00000013777) #13	VAX1 (ENSPSIG00000014288) #14	ENSPSIG00000014326	SLC18A2 (ENSPSIG00000014423) #16	PDZD8 (ENSPSIG00000015048) #17	ENSPSIG00000000395	EMX2 (ENSPSIG00000015205) #18	RAB11FIP2 (ENSPSIG00000015960) #19	FAM204A (ENSPSIG00000016004) #20	ENSPSIG00000000403	PRLHR (ENSPSIG00000017264)	CACUL1 (ENSPSIG00000017349) #21	ENSPSIG00000000407 #22	EIF3A (ENSPSIG00000006102) #23	ENSPSIG00000000412	DENND10 (ENSPSIG00000006426) #24	SFXN4 (ENSPSIG00000006657) #25	PRDX3 (ENSPSIG00000007308) #26	GRK5 (ENSPSIG00000008000) #27	ENSPSIG00000013652	ENSPSIG00000013690	BAG3 (ENSPSIG00000015275) #30	SEC23IP (ENSPSIG00000016139) #33	INPP5F (ENSPSIG00000016807) #31	MCMBP (ENSPSIG00000006179) #32	ENSPSIG00000000417	PLPP4 (ENSPSIG00000007283) #34	WDR11 (ENSPSIG00000007623) #35
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Australian saltwater crocodile	MODERN SPECIES	68	ENSCPRG00005010768 #9	ENSCPRG00005010725 #9	C10orf82 (ENSCPRG00005010710) #10	HSPA12A (ENSCPRG00005010703) #11	ENO4 (ENSCPRG00005010695) #12	SHTN1 (ENSCPRG00005010686) #13	ENSCPRG00005010684	SLC18A2 (ENSCPRG00005010681) #16	PDZD8 (ENSCPRG00005010673) #17	ENSCPRG00005010671	RAB11FIP2 (ENSCPRG00005010665) #19	FAM204A (ENSCPRG00005010653) #20	ENSCPRG00005010636	PRLHR (ENSCPRG00005010634)	CACUL1 (ENSCPRG00005010620) #21	NANOS1 (ENSCPRG00005010610) #22	EIF3A (ENSCPRG00005010591) #23	ENSCPRG00005010572	PRDX3 (ENSCPRG00005010560) #26	GRK5 (ENSCPRG00005010553) #27	ENSCPRG00005010516	TIAL1 (ENSCPRG00005010488) #29	BAG3 (ENSCPRG00005010481) #30	INPP5F (ENSCPRG00005010451) #31	MCMBP (ENSCPRG00005010437) #32	SEC23IP (ENSCPRG00005010423) #33	ENSCPRG00005010403	PLPP4 (ENSCPRG00005010400) #34	WDR11 (ENSCPRG00005010238) #35	FGFR2 (ENSCPRG00005010191) #36	ATE1 (ENSCPRG00005010141) #37
Aves	ANCESTRAL SPECIES	6	ENSGT00940000155139.j.a #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000155139.j.a #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000155139.j.a #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00940000155139.j.a #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00940000155139.j.a #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Chicken	MODERN SPECIES	35	ENSGALG00010022686 #9	ENSGALG00010022693 #9	PNLIPRP1 (ENSGALG00010022713) #9	HSPA12A (ENSGALG00010022749) #11	ENO4 (ENSGALG00010022787) #12	SHTN1 (ENSGALG00010022820) #13	VAX1 (ENSGALG00010017907) #14	KCNK18 (ENSGALG00010022257) #15	SLC18A2 (ENSGALG00010022271) #16	PDZD8 (ENSGALG00010022280) #17	EMX2 (ENSGALG00010001948) #18	RAB11FIP2 (ENSGALG00010001958) #19	FAM204A (ENSGALG00010001972) #20	PRLHR (ENSGALG00010002056)	CACUL1 (ENSGALG00010002146) #21	NANOS1 (ENSGALG00010002766) #22	EIF3A (ENSGALG00010002150) #23	FAM45A (ENSGALG00010002196)	SFXN4 (ENSGALG00010002202) #25	PRDX3 (ENSGALG00010002225) #26	GRK5 (ENSGALG00010002251) #27	RGS10 (ENSGALG00010002277) #28	TIAL1 (ENSGALG00010002361)	BAG3 (ENSGALG00010002371) #30	INPP5F (ENSGALG00010002383) #31	MCMBP (ENSGALG00010002387) #32	SEC23IP (ENSGALG00010002396) #33	PLPP4 (ENSGALG00010001287) #34	WDR11 (ENSGALG00010001398) #35	FGFR2 (ENSGALG00010001411) #36	ATE1 (ENSGALG00010001426) #37
Japanese quail	MODERN SPECIES	24	ENSCJPG00005020109 #9	ENSCJPG00005020112 #9	HSPA12A (ENSCJPG00005020113) #11	ENO4 (ENSCJPG00005020114) #12	SHTN1 (ENSCJPG00005020115) #13	VAX1 (ENSCJPG00005020117) #14	KCNK18 (ENSCJPG00005020118) #15	SLC18A2 (ENSCJPG00005020119) #16	PDZD8 (ENSCJPG00005020120) #17	EMX2 (ENSCJPG00005020121) #18	ENSCJPG00005020122	RAB11FIP2 (ENSCJPG00005020123) #19	FAM204A (ENSCJPG00005020126) #20	ENSCJPG00005020127	CACUL1 (ENSCJPG00005020128) #21	NANOS1 (ENSCJPG00005020131) #22	EIF3A (ENSCJPG00005020132) #23	ENSCJPG00005020135	SFXN4 (ENSCJPG00005020136) #25	PRDX3 (ENSCJPG00005020137) #26	GRK5 (ENSCJPG00005020139) #27	RGS10 (ENSCJPG00005020142) #28	ENSCJPG00005020143	BAG3 (ENSCJPG00005020144) #30	INPP5F (ENSCJPG00005020145) #31	MCMBP (ENSCJPG00005020146) #32	SEC23IP (ENSCJPG00005020147) #33	PLPP4 (ENSCJPG00005020152) #34	WDR11 (ENSCJPG00005020153) #35	FGFR2 (ENSCJPG00005020154) #36	ATE1 (ENSCJPG00005020156) #37
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000155139.j.a.c #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000165789	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Duck	MODERN SPECIES	24	ENSAPLG00000028551 #9	ENSAPLG00000008405 #9	ENSAPLG00000008682 #9	HSPA12A (ENSAPLG00000009823) #11	ENO4 (ENSAPLG00000010075) #12	SHTN1 (ENSAPLG00000010399) #13	VAX1 (ENSAPLG00000010700) #14	ENSAPLG00000010704	SLC18A2 (ENSAPLG00000010707) #16	PDZD8 (ENSAPLG00000022941) #17	EMX2 (ENSAPLG00000024273) #18	RAB11FIP2 (ENSAPLG00000006278) #19	FAM204A (ENSAPLG00000006401) #20	ENSAPLG00000001060	CACUL1 (ENSAPLG00000006462) #21	NANOS1 (ENSAPLG00000021595) #22	EIF3A (ENSAPLG00000006637) #23	ENSAPLG00000007524	SFXN4 (ENSAPLG00000007674) #25	PRDX3 (ENSAPLG00000021984) #26	ENSAPLG00000007885 ##27	ENSAPLG00000031123 ##27	RGS10 (ENSAPLG00000009045) #28	TIAL1 (ENSAPLG00000009088) #29	ENSAPLG00000029441 #30	ENSAPLG00000021626 #31	ENSAPLG00000021679 #31	ENSAPLG00000028455	MCMBP (ENSAPLG00000009939) #32	ENSAPLG00000025076 #33	ENSAPLG00000018439 #33
Pink-footed goose	MODERN SPECIES	11	ENSABRG00000002175 #9	ENSABRG00000002078 #9	ENSABRG00000001840 #9	HSPA12A (ENSABRG00000001707) #11	ENO4 (ENSABRG00000001670) #12	SHTN1 (ENSABRG00000001621) #13	VAX1 (ENSABRG00000001585) #14	ENSABRG00000001573	SLC18A2 (ENSABRG00000001541) #16	PDZD8 (ENSABRG00000001523) #17	EMX2 (ENSABRG00000001504) #18	RAB11FIP2 (ENSABRG00000001462) #19	FAM204A (ENSABRG00000001447) #20	ENSABRG00000001426	CACUL1 (ENSABRG00000001401) #21	NANOS1 (ENSABRG00000001345) #22	EIF3A (ENSABRG00000001287) #23	ENSABRG00000001251	SFXN4 (ENSABRG00000001170) #25	PRDX3 (ENSABRG00000001149) #26	GRK5 (ENSABRG00000001057) #27	RGS10 (ENSABRG00000001042) #28	TIAL1 (ENSABRG00000000984) #29	BAG3 (ENSABRG00000000967) #30	INPP5F (ENSABRG00000000924) #31	MCMBP (ENSABRG00000000877) #32	SEC23IP (ENSABRG00000000804) #33	PLPP4 (ENSABRG00000000668) #34	WDR11 (ENSABRG00000000644) #35	ENSABRG00000000638	FGFR2 (ENSABRG00000000608) #36
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000155139.j.a #9	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Golden eagle	MODERN SPECIES	2	ENSACCG00020008175 #9	ENSACCG00020008152 #9	ENSACCG00020008090 #9	HSPA12A (ENSACCG00020008024) #11	ENO4 (ENSACCG00020007991) #12	SHTN1 (ENSACCG00020007966) #13	VAX1 (ENSACCG00020007958) #14	ENSACCG00020007947	SLC18A2 (ENSACCG00020007935) #16	PDZD8 (ENSACCG00020007923) #17	EMX2 (ENSACCG00020007914) #18	RAB11FIP2 (ENSACCG00020007904) #19	FAM204A (ENSACCG00020007890) #20	ENSACCG00020007882	CACUL1 (ENSACCG00020007856) #21	NANOS1 (ENSACCG00020007832) #22	EIF3A (ENSACCG00020007813) #23	ENSACCG00020007799	SFXN4 (ENSACCG00020007778) #25	PRDX3 (ENSACCG00020007769) #26	GRK5 (ENSACCG00020007658) #27	RGS10 (ENSACCG00020007575) #28	TIAL1 (ENSACCG00020007557) #29	BAG3 (ENSACCG00020007545) #30	INPP5F (ENSACCG00020007437) #31	MCMBP (ENSACCG00020007244) #32	SEC23IP (ENSACCG00020007215) #33	PLPP4 (ENSACCG00020007199) #34	WDR11 (ENSACCG00020007177) #35	FGFR2 (ENSACCG00020007148) #36	ATE1 (ENSACCG00020007114) #37
Kakapo	MODERN SPECIES	22	ENSSHBG00005000817 #9	ENSSHBG00005000822 #9	ENSSHBG00005000826 #9	HSPA12A (ENSSHBG00005000832) #11	ENO4 (ENSSHBG00005000833) #12	SHTN1 (ENSSHBG00005000834) #13	VAX1 (ENSSHBG00005000835) #14	ENSSHBG00005000836	SLC18A2 (ENSSHBG00005000837) #16	PDZD8 (ENSSHBG00005000838) #17	EMX2 (ENSSHBG00005002702) #18	RAB11FIP2 (ENSSHBG00005002712) #19	FAM204A (ENSSHBG00005002729) #20	ENSSHBG00005002745	CACUL1 (ENSSHBG00005002756) #21	NANOS1 (ENSSHBG00005002776) #22	EIF3A (ENSSHBG00005002799) #23	ENSSHBG00005002832	SFXN4 (ENSSHBG00005002846) #25	PRDX3 (ENSSHBG00005002865) #26	GRK5 (ENSSHBG00005002953) #27	RGS10 (ENSSHBG00005002990) #28	ENSSHBG00005003012	ENSSHBG00005003028	BAG3 (ENSSHBG00005003039) #30	INPP5F (ENSSHBG00005003229) #31	MCMBP (ENSSHBG00005003485) #32	SEC23IP (ENSSHBG00005003520) #33	PLPP4 (ENSSHBG00005003537) #34	WDR11 (ENSSHBG00005003553) #35	FGFR2 (ENSSHBG00005003568) #36
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Great tit	MODERN SPECIES	26	ENSPMJG00000005473 #9	ENSPMJG00000005512 #9	ENSPMJG00000005513 #9	HSPA12A (ENSPMJG00000005514) #11	ENO4 (ENSPMJG00000005517) #12	SHTN1 (ENSPMJG00000005521) #13	VAX1 (ENSPMJG00000005525) #14	ENSPMJG00000005530	SLC18A2 (ENSPMJG00000005533) #16	PDZD8 (ENSPMJG00000005535) #17	EMX2 (ENSPMJG00000005539) #18	RAB11FIP2 (ENSPMJG00000005542) #19	FAM204A (ENSPMJG00000005546) #20	ENSPMJG00000005551	CACUL1 (ENSPMJG00000005563) #21	NANOS1 (ENSPMJG00000005572) #22	EIF3A (ENSPMJG00000005575) #23	ENSPMJG00000005582	SFXN4 (ENSPMJG00000005585) #25	PRDX3 (ENSPMJG00000005590) #26	GRK5 (ENSPMJG00000005626) #27	RGS10 (ENSPMJG00000005630) #28	ENSPMJG00000005634	BAG3 (ENSPMJG00000005635) #30	INPP5F (ENSPMJG00000005637) #31	MCMBP (ENSPMJG00000005642) #32	SEC23IP (ENSPMJG00000005643) #33	PLPP4 (ENSPMJG00000005646) #34	WDR11 (ENSPMJG00000005652) #35	FGFR2 (ENSPMJG00000005686) #36	ATE1 (ENSPMJG00000005695) #37
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Flycatcher	MODERN SPECIES	25	ENSFALG00000002219 #9	HSPA12A (ENSFALG00000002212) #11	ENO4 (ENSFALG00000002210) #12	SHTN1 (ENSFALG00000002208) #13	VAX1 (ENSFALG00000026819) #14	ENSFALG00000002204	SLC18A2 (ENSFALG00000002203) #16	PDZD8 (ENSFALG00000002202) #17	ENSFALG00000023408	EMX2 (ENSFALG00000024314) #18	RAB11FIP2 (ENSFALG00000002200) #19	ENSFALG00000024615	FAM204A (ENSFALG00000002199) #20	ENSFALG00000015039	CACUL1 (ENSFALG00000024371) #21	NANOS1 (ENSFALG00000002196) #22	EIF3A (ENSFALG00000002192) #23	DENND10 (ENSFALG00000002191) #24	ENSFALG00000002189 #25	PRDX3 (ENSFALG00000024188) #26	GRK5 (ENSFALG00000002184) #27	RGS10 (ENSFALG00000002181) #28	ENSFALG00000002173	BAG3 (ENSFALG00000002165) #30	ENSFALG00000024667	INPP5F (ENSFALG00000002164) #31	MCMBP (ENSFALG00000002162) #32	SEC23IP (ENSFALG00000002159) #33	PLPP4 (ENSFALG00000026547) #34	ENSFALG00000024601	WDR11 (ENSFALG00000002154) #35
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000155139.j.b #9	ENSGT00940000155139.i #9	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00940000165789	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Common canary	MODERN SPECIES	7	ENSSCAG00000014594 #9	ENSSCAG00000014585 #9	ENSSCAG00000014583 #9	ENSSCAG00000014562 #9	HSPA12A (ENSSCAG00000014511) #11	ENO4 (ENSSCAG00000014501) #12	SHTN1 (ENSSCAG00000014384) #13	ENSSCAG00000014332	SLC18A2 (ENSSCAG00000014325) #16	PDZD8 (ENSSCAG00000014321) #17	EMX2 (ENSSCAG00000014317) #18	RAB11FIP2 (ENSSCAG00000014312) #19	FAM204A (ENSSCAG00000014304) #20	ENSSCAG00000014301	CACUL1 (ENSSCAG00000014288) #21	NANOS1 (ENSSCAG00000014280) #22	EIF3A (ENSSCAG00000014260) #23	ENSSCAG00000014253	SFXN4 (ENSSCAG00000014243) #25	PRDX3 (ENSSCAG00000014236) #26	GRK5 (ENSSCAG00000014217) #27	RGS10 (ENSSCAG00000014206) #28	TIAL1 (ENSSCAG00000014203) #29	BAG3 (ENSSCAG00000014200) #30	INPP5F (ENSSCAG00000014059) #31	MCMBP (ENSSCAG00000014009) #32	SEC23IP (ENSSCAG00000013890) #33	PLPP4 (ENSSCAG00000013843) #34	WDR11 (ENSSCAG00000013823) #35	ENSSCAG00000013814	FGFR2 (ENSSCAG00000013802) #36
Zebra finch	MODERN SPECIES	28	ENSTGUG00000011024 #9	ENSTGUG00000021690 #9	ENSTGUG00000016498 #9	HSPA12A (ENSTGUG00000011029) #11	ENO4 (ENSTGUG00000011042) #12	SHTN1 (ENSTGUG00000011047) #13	VAX1 (ENSTGUG00000011051) #14	ENSTGUG00000025600	SLC18A2 (ENSTGUG00000011058) #16	PDZD8 (ENSTGUG00000011072) #17	EMX2 (ENSTGUG00000011076) #18	RAB11FIP2 (ENSTGUG00000011078) #19	FAM204A (ENSTGUG00000011080) #20	ENSTGUG00000011085	CACUL1 (ENSTGUG00000011089) #21	NANOS1 (ENSTGUG00000019075) #22	EIF3A (ENSTGUG00000011093) #23	ENSTGUG00000011107	SFXN4 (ENSTGUG00000011111) #25	ENSTGUG00000021412	GRK5 (ENSTGUG00000011126) #27	RGS10 (ENSTGUG00000023661) #28	ENSTGUG00000011148	BAG3 (ENSTGUG00000011164) #30	INPP5F (ENSTGUG00000011167) #31	MCMBP (ENSTGUG00000011183) #32	SEC23IP (ENSTGUG00000011192) #33	PLPP4 (ENSTGUG00000011201) #34	WDR11 (ENSTGUG00000011203) #35	FGFR2 (ENSTGUG00000011228) #36	ATE1 (ENSTGUG00000011274) #37
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00960000190376	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35
tuatara	MODERN SPECIES	1076	ENSSPUG00000001674	ENSSPUG00000001737	CCDC172 (ENSSPUG00000001761)	PNLIPRP2 (ENSSPUG00000001813) #9	HSPA12A (ENSSPUG00000001968) #11	ENO4 (ENSSPUG00000002021) #12	SHTN1 (ENSSPUG00000002048) #13	VAX1 (ENSSPUG00000002073) #14	SLC18A2 (ENSSPUG00000002088) #16	PDZD8 (ENSSPUG00000002095) #17	EMX2 (ENSSPUG00000002100) #18	RAB11FIP2 (ENSSPUG00000002112) #19	FAM204A (ENSSPUG00000002122) #20	ENSSPUG00000002130	CACUL1 (ENSSPUG00000002151) #21	NANOS1 (ENSSPUG00000002169) #22	ENSSPUG00000002293	ENSSPUG00000002301 #25	PRDX3 (ENSSPUG00000002313) #26	GRK5 (ENSSPUG00000002329) #27	ENSSPUG00000002373	TIAL1 (ENSSPUG00000002412) #29	ENSSPUG00000002428 #30	ENSSPUG00000002438 #31	ENSSPUG00000002497	MCMBP (ENSSPUG00000002507) #32	ENSSPUG00000002532 #33	ENSSPUG00000002547 #33	ENSSPUG00000002567	PLPP4 (ENSSPUG00000002589) #34
Episquamata	ANCESTRAL SPECIES	2	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Laterata	ANCESTRAL SPECIES		ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000165789	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Common wall lizard	MODERN SPECIES	13	ENO4 (ENSPMRG00000006723) #12	SHTN1 (ENSPMRG00000006715) #13	VAX1 (ENSPMRG00000006712) #14	ENSPMRG00000006710	KCNK18 (ENSPMRG00000006704) #15	SLC18A2 (ENSPMRG00000006698) #16	PDZD8 (ENSPMRG00000006695) #17	EMX2 (ENSPMRG00000006691) #18	RAB11FIP2 (ENSPMRG00000006683) #19	FAM204A (ENSPMRG00000006664) #20	ENSPMRG00000006659	ENSPMRG00000006657	ENSPMRG00000006656	ENSPMRG00000006651	CACUL1 (ENSPMRG00000006643) #21	NANOS1 (ENSPMRG00000006637) #22	EIF3A (ENSPMRG00000006618) #23	ENSPMRG00000006605	PRDX3 (ENSPMRG00000006596) #26	GRK5 (ENSPMRG00000006579) #27	RGS10 (ENSPMRG00000006569) #28	ENSPMRG00000006541	BAG3 (ENSPMRG00000006537) #30	INPP5F (ENSPMRG00000006527) #31	MCMBP (ENSPMRG00000006513) #32	SEC23IP (ENSPMRG00000006499) #33	ENSPMRG00000006493	PLPP4 (ENSPMRG00000006469) #34	WDR11 (ENSPMRG00000006420) #35	FGFR2 (ENSPMRG00000006399) #36	ATE1 (ENSPMRG00000006382) #37
Argentine black and white tegu	MODERN SPECIES	65	C10orf82 (ENSSMRG00000003248) #10	HSPA12A (ENSSMRG00000003250) #11	ENO4 (ENSSMRG00000003251) #12	SHTN1 (ENSSMRG00000003273) #13	VAX1 (ENSSMRG00000003281) #14	ENSSMRG00000003305	SLC18A2 (ENSSMRG00000003317) #16	PDZD8 (ENSSMRG00000003328) #17	EMX2 (ENSSMRG00000003348) #18	RAB11FIP2 (ENSSMRG00000003366) #19	ENSSMRG00000003380	FAM204A (ENSSMRG00000003386) #20	ENSSMRG00000003401	PRLHR (ENSSMRG00000003404)	CACUL1 (ENSSMRG00000003422) #21	NANOS1 (ENSSMRG00000003441) #22	EIF3A (ENSSMRG00000003451) #23	ENSSMRG00000004522	SFXN4 (ENSSMRG00000004528) #25	PRDX3 (ENSSMRG00000004533) #26	GRK5 (ENSSMRG00000004549) #27	ENSSMRG00000004590	TIAL1 (ENSSMRG00000004608) #29	BAG3 (ENSSMRG00000004620) #30	INPP5F (ENSSMRG00000004622) #31	MCMBP (ENSSMRG00000004639) #32	SEC23IP (ENSSMRG00000005344) #33	PLPP4 (ENSSMRG00000005367) #34	WDR11 (ENSSMRG00000005374) #35	FGFR2 (ENSSMRG00000005415) #36	ATE1 (ENSSMRG00000005447) #37
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000160482 #29	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Indian cobra	MODERN SPECIES	3	HSPA12A (ENSNNAG00000006683) #11	ENO4 (ENSNNAG00000006552) #12	SHTN1 (ENSNNAG00000006512) #13	VAX1 (ENSNNAG00000006494) #14	ENSNNAG00000006416	SLC18A2 (ENSNNAG00000006365) #16	ENSNNAG00000006354	PDZD8 (ENSNNAG00000006337) #17	EMX2 (ENSNNAG00000006312) #18	ENSNNAG00000006305	RAB11FIP2 (ENSNNAG00000006294) #19	FAM204A (ENSNNAG00000006282) #20	ENSNNAG00000006264	PRLHR (ENSNNAG00000006262)	CACUL1 (ENSNNAG00000006225) #21	NANOS1 (ENSNNAG00000006194) #22	EIF3A (ENSNNAG00000006102) #23	ENSNNAG00000006074	ENSNNAG00000006052 #25	PRDX3 (ENSNNAG00000006010) #26	GRK5 (ENSNNAG00000005954) #27	RGS10 (ENSNNAG00000005939) #28	ENSNNAG00000005871	BAG3 (ENSNNAG00000005857) #30	INPP5F (ENSNNAG00000005737) #31	MCMBP (ENSNNAG00000005668) #32	SEC23IP (ENSNNAG00000005588) #33	PLPP4 (ENSNNAG00000005540) #34	WDR11 (ENSNNAG00000005498) #35	FGFR2 (ENSNNAG00000005354) #36	ATE1 (ENSNNAG00000005291) #37
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36	ENSGT00500000044926 #37
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000155139.i #9	ENSGT00390000017460 #10	ENSGT00940000154551 #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000161152 #14	ENSGT00940000166380	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00940000162008	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000168868	ENSGT00990000212952	ENSGT00940000153430.a.b #26	ENSGT00940000160702.b #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Mainland tiger snake	MODERN SPECIES		ENSNSUG00000002334 #9	C10orf82 (ENSNSUG00000002333) #10	HSPA12A (ENSNSUG00000002330) #11	ENO4 (ENSNSUG00000002245) #12	SHTN1 (ENSNSUG00000002153) #13	VAX1 (ENSNSUG00000002145) #14	ENSNSUG00000002140	SLC18A2 (ENSNSUG00000002122) #16	PDZD8 (ENSNSUG00000002119) #17	EMX2 (ENSNSUG00000002110) #18	RAB11FIP2 (ENSNSUG00000002106) #19	FAM204A (ENSNSUG00000002075) #20	ENSNSUG00000002074	PRLHR (ENSNSUG00000002071)	CACUL1 (ENSNSUG00000002070) #21	NANOS1 (ENSNSUG00000002068) #22	EIF3A (ENSNSUG00000002061) #23	ENSNSUG00000002060	ENSNSUG00000002056	ENSNSUG00000002054	PRDX3 (ENSNSUG00000002052) #26	GRK5 (ENSNSUG00000001907) #27	RGS10 (ENSNSUG00000001871) #28	ENSNSUG00000001866	BAG3 (ENSNSUG00000001865) #30	INPP5F (ENSNSUG00000001107) #31	MCMBP (ENSNSUG00000001099) #32	SEC23IP (ENSNSUG00000001094) #33	ENSNSUG00000001093	PLPP4 (ENSNSUG00000001090) #34	ENSNSUG00000001085
Eastern brown snake	MODERN SPECIES	25	C10orf82 (ENSPTXG00000003871) #10	HSPA12A (ENSPTXG00000003875) #11	ENO4 (ENSPTXG00000003884) #12	SHTN1 (ENSPTXG00000003892) #13	VAX1 (ENSPTXG00000003895) #14	ENSPTXG00000003896	SLC18A2 (ENSPTXG00000011407) #16	PDZD8 (ENSPTXG00000011408) #17	EMX2 (ENSPTXG00000011409) #18	RAB11FIP2 (ENSPTXG00000011410) #19	ENSPTXG00000011411	FAM204A (ENSPTXG00000011412) #20	ENSPTXG00000011443	PRLHR (ENSPTXG00000011444)	CACUL1 (ENSPTXG00000011446) #21	NANOS1 (ENSPTXG00000011447) #22	EIF3A (ENSPTXG00000011448) #23	ENSPTXG00000011451	ENSPTXG00000011452	PRDX3 (ENSPTXG00000011454) #26	GRK5 (ENSPTXG00000011455) #27	RGS10 (ENSPTXG00000011466) #28	ENSPTXG00000011468	BAG3 (ENSPTXG00000011470) #30	INPP5F (ENSPTXG00000011471) #31	MCMBP (ENSPTXG00000011480) #32	SEC23IP (ENSPTXG00000011814) #33	PLPP4 (ENSPTXG00000011887) #34	WDR11 (ENSPTXG00000011888) #35	FGFR2 (ENSPTXG00000011890) #36	ATE1 (ENSPTXG00000011891) #37
Blue-lipped sea krait	MODERN SPECIES	57																NANOS1 (ENSLLTG00000011369) #22	EIF3A (ENSLLTG00000006461) #23	ENSLLTG00000006341	SFXN4 (ENSLLTG00000006331) #25	PRDX3 (ENSLLTG00000006322) #26
Lizard	MODERN SPECIES	1012													CACUL1 (ENSACAG00000045158) #21	ENSACAG00000040497	ENSACAG00000034757	NANOS1 (ENSACAG00000027867) #22	EIF3A (ENSACAG00000016784) #23	SFXN4 (ENSACAG00000016888) #25	PRDX3 (ENSACAG00000045011) #26	GRK5 (ENSACAG00000016904) #27	ENSACAG00000038238	ENSACAG00000028667	ENSACAG00000041317
Anura	ANCESTRAL SPECIES	102	ENSGT00940000155139.n.a.b #9	ENSGT00940000155139.m.a #9	ENSGT00940000166380	ENSGT00940000161152 #14	ENSGT00510000048167.a #13	ENSGT00950000182805.a.b #12	ENSGT00940000154551 #11	ENSGT00940000155139.n.b #9	ENSGT00940000157593.y.b #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482.k #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23
Frog	MODERN SPECIES	7	ENSXETG00000036389	shtn1 (ENSXETG00000014321) #13	ENSXETG00000045115	ENSXETG00000045352	eno4 (ENSXETG00000014319) #12	hspa12a (ENSXETG00000014317) #11	ENSXETG00000041262 #9	SLC18A2 (ENSXETG00000046436) #16	PDZD8 (ENSXETG00000031484) #17	emx2 (ENSXETG00000046580) #18	ENSXETG00000046724	rab11fip2 (ENSXETG00000047216) #19	FAM204A (ENSXETG00000010243) #20	prlhr (ENSXETG00000024316)	cacul1 (ENSXETG00000030536) #21	nanos1 (ENSXETG00000047463) #22	eif3a (ENSXETG00000010241) #23	ENSXETG00000046974	sec23ip (ENSXETG00000010238) #33	mcmbp (ENSXETG00000010237) #32	inpp5f (ENSXETG00000010235) #31	bag3 (ENSXETG00000047441) #30	tial1 (ENSXETG00000045788) #29	rgs10 (ENSXETG00000046414) #28	prdx3 (ENSXETG00000010230) #27	ENSXETG00000006293	ENSXETG00000042054	ENSXETG00000010226	ENSXETG00000042647	a2ml1 (ENSXETG00000017070)	ENSXETG00000008230
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000021646	ENSLLEG00000021855	MC4R (ENSLLEG00000011826)	C5orf22 (ENSLLEG00000011880)	DROSHA (ENSLLEG00000012129)	CDH6 (ENSLLEG00000012511)	ENSLLEG00000012591	ENSLLEG00000012612	ENSLLEG00000012632	ENSLLEG00000012660	CDH9 (ENSLLEG00000012695)	ENSLLEG00000012816	ENSLLEG00000012829	ENSLLEG00000012847	CDH10 (ENSLLEG00000012889)	ENSLLEG00000013098 #22	ENSLLEG00000013141	ENSLLEG00000013184	ENSLLEG00000013196	ENSLLEG00000013265	ENSLLEG00000013286	ENSLLEG00000013316	CDH12 (ENSLLEG00000013338)	ENSLLEG00000013489	ENSLLEG00000013506	CDH18 (ENSLLEG00000013553)	ENSLLEG00000013707	BASP1 (ENSLLEG00000013754)	MYO10 (ENSLLEG00000013821)	ENSLLEG00000014598	ENSLLEG00000014619
Coelacanth	MODERN SPECIES	729																NANOS1 (ENSLACG00000015195) #22	EIF3A (ENSLACG00000014932) #23	dennd10 (ENSLACG00000014839)	SFXN4 (ENSLACG00000014747) #25	PRDX3 (ENSLACG00000014651) #26	GRK5 (ENSLACG00000013521) #27	RGS10 (ENSLACG00000012231) #28	TIAL1 (ENSLACG00000011749) #29	BAG3 (ENSLACG00000011309) #30	INPP5F (ENSLACG00000022273) #31	MCMBP (ENSLACG00000008760) #32	SEC23IP (ENSLACG00000007486) #33
Actinopterygii	ANCESTRAL SPECIES	113	ENSGT00940000155139 #9	ENSGT00390000017460 #10	ENSGT00940000154551.b #11	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000155068.a.b	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26	ENSGT00940000160702 #27	ENSGT00940000161426 #28	ENSGT00940000154962.B	ENSGT00940000160482 #29	ENSGT00940000159204 #30	ENSGT00940000155996 #31	ENSGT00390000017265 #32	ENSGT00940000156602 #33	ENSGT00940000158288 #34	ENSGT00390000004068 #35	ENSGT00940000155447 #36
Neopterygii	ANCESTRAL SPECIES	72	ENSGT00940000154551.b #11	ENSGT01050000244965.a.b	ENSGT00390000004582	ENSGT00950000182805.a.b #12	ENSGT00510000048167.a #13	ENSGT00940000155068.a.b	ENSGT00940000161152 #14	ENSGT00700000104522 #15	ENSGT00940000157593 #16	ENSGT00390000017746 #17	ENSGT00940000157425.B #18	ENSGT00940000158482 #19	ENSGT00390000008978 #20	ENSGT00940000164128.a	ENSGT00390000000403 #21	ENSGT00950000183135.B.b #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT01030000234641.a.b #25	ENSGT00940000153430.a.b #26
Spotted gar	MODERN SPECIES	671	eno4 (ENSLOCG00000009597) #12	shtn1 (ENSLOCG00000009606) #13	ENSLOCG00000009623	ENSLOCG00000009629	vax1 (ENSLOCG00000009641) #14	ENSLOCG00000009651	slc18a2 (ENSLOCG00000009666) #16	PDZD8 (ENSLOCG00000009680) #17	emx2 (ENSLOCG00000009698) #18	ENSLOCG00000009702	RAB11FIP2 (ENSLOCG00000009709) #19	fam204a (ENSLOCG00000009714) #20	ENSLOCG00000018241	PRLHR (ENSLOCG00000018242)	CACUL1 (ENSLOCG00000009720) #21	NANOS1 (ENSLOCG00000018243) #22	eif3s10 (ENSLOCG00000009729) #23	dennd10 (ENSLOCG00000009752)	sfxn4 (ENSLOCG00000009759) #25	prdx3 (ENSLOCG00000009763) #26	SRGAP3 (ENSLOCG00000009772)	thumpd3 (ENSLOCG00000009800)	cntn4 (ENSLOCG00000009813)	ENSLOCG00000009835	ENSLOCG00000009860	ENSLOCG00000009897	pdzrn3b (ENSLOCG00000009917)	ENSLOCG00000009926	ppp4r2b (ENSLOCG00000009942)	gxylt2 (ENSLOCG00000009958)	shq1 (ENSLOCG00000009970)
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT00940000173692	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Pinecone sodierfish	MODERN SPECIES	14	ENSMMDG00005012680	ENSMMDG00005012677	MTARC2 (ENSMMDG00005012675)	HHIPL2 (ENSMMDG00005012672)	wdr32 (ENSMMDG00005012670)	CPXM1 (ENSMMDG00005012667)	ENSMMDG00005012655	ube2d3 (ENSMMDG00005012480)	manba (ENSMMDG00005012473)	SLC39A8 (ENSMMDG00005012462)	ENSMMDG00005012451	ENSMMDG00005012449	DCTN1 (ENSMMDG00005003090)	ENSMMDG00005002647	si:dkey-33c12.4 (ENSMMDG00005002627)	ENSMMDG00005002618 ##22	si:dkey-33c12.3 (ENSMMDG00005002607)	mrps26 (ENSMMDG00005002599)	loxl3b (ENSMMDG00005002574)	pank2 (ENSMMDG00005017043)	ENSMMDG00005017017	ENSMMDG00005017015	ENSMMDG00005017013	sfxn5a (ENSMMDG00005017011) ##25	emx1 (ENSMMDG00005017010)	noto (ENSMMDG00005017009)	ENSMMDG00005017008	ap5s1 (ENSMMDG00005017007)	ENSMMDG00005017006	ENSMMDG00005017005	gfra4a (ENSMMDG00005017001)
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Tiger tail seahorse	MODERN SPECIES	399	ENSHCOG00000011849	CPXM1 (ENSHCOG00000011844)	wdr32 (ENSHCOG00000011821)	rmnd1 (ENSHCOG00000011799)	ENSHCOG00000011776	ENSHCOG00000011747	ENSHCOG00000011727	ENSHCOG00000011642	ENSHCOG00000011630	ENSHCOG00000011597	TULP4 (ENSHCOG00000011585)	slc18b1 (ENSHCOG00000011551)	ahi1 (ENSHCOG00000011539)	OTOF (ENSHCOG00000011514)	DCTN1 (ENSHCOG00000011466)	NANOS1 (ENSHCOG00000011423) ##22	si:dkey-33c12.3 (ENSHCOG00000011415)	mrps26 (ENSHCOG00000011405)	loxl3b (ENSHCOG00000011391)	pank2 (ENSHCOG00000011357)	ENSHCOG00000011330	ENSHCOG00000011319	ENSHCOG00000011316	ENSHCOG00000011306	emx1 (ENSHCOG00000011298)	noto (ENSHCOG00000011295)	ENSHCOG00000011279	ap5s1 (ENSHCOG00000011270)
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Eupercaria	ANCESTRAL SPECIES	9	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Ballan wrasse	MODERN SPECIES	875																ENSLBEG00000027516 ##22	si:dkey-33c12.3 (ENSLBEG00000027506)	mrps26 (ENSLBEG00000027491)	loxl3b (ENSLBEG00000027460)	pank2 (ENSLBEG00000027417)	ENSLBEG00000027391	ENSLBEG00000027372
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Stickleback	MODERN SPECIES	15	ENSGACG00000005165	marc1 (ENSGACG00000005156)	ENSGACG00000005133	wdr32 (ENSGACG00000005118)	CPXM1 (ENSGACG00000005081)	ENSGACG00000005070	ube2d3 (ENSGACG00000005044)	manba (ENSGACG00000004987)	SLC39A8 (ENSGACG00000004978)	ENSGACG00000004975	DCTN1 (ENSGACG00000004951)	ENSGACG00000004945	ENSGACG00000004943	ENSGACG00000004936	ENSGACG00000004933	ENSGACG00000004930 ##22	si:dkey-33c12.3 (ENSGACG00000004925)	mrps26 (ENSGACG00000004920)	loxl3b (ENSGACG00000004902)	pank2 (ENSGACG00000004895)	ENSGACG00000004891	ENSGACG00000004888	ENSGACG00000004886	sfxn5a (ENSGACG00000004871) ##25	emx1 (ENSGACG00000004860)	noto (ENSGACG00000004856)	CDC25B (ENSGACG00000004851)	ap5s1 (ENSGACG00000004849)	ENSGACG00000004847	BTBD6 (ENSGACG00000004835)	brf1a (ENSGACG00000004823)
Lumpfish	MODERN SPECIES	14	nenf (ENSCLMG00005015928)	ezra (ENSCLMG00005015923)	ENSCLMG00005015921	marc1 (ENSCLMG00005015920)	HHIPL2 (ENSCLMG00005015919)	wdr32 (ENSCLMG00005015918)	CPXM1 (ENSCLMG00005015579)	ENSCLMG00005015578	ube2d3 (ENSCLMG00005015322)	manba (ENSCLMG00005015314)	SLC39A8 (ENSCLMG00005015312)	ENSCLMG00005015311	DCTN1 (ENSCLMG00005015150)	ENSCLMG00005015132	si:dkey-33c12.4 (ENSCLMG00005015128)	NANOS1 (ENSCLMG00005015126) ##22	si:dkey-33c12.3 (ENSCLMG00005015123)	mrps26 (ENSCLMG00005015122)	loxl3b (ENSCLMG00005014919)	pank2 (ENSCLMG00005014906)	ENSCLMG00005014897	ENSCLMG00005014895	ENSCLMG00005014894	ENSCLMG00005014893	sfxn5a (ENSCLMG00005014891) ##25	emx1 (ENSCLMG00005014890)	noto (ENSCLMG00005014887)	ENSCLMG00005014885	ap5s1 (ENSCLMG00005014881)	gfra4a (ENSCLMG00005014879)	ENSCLMG00005014877
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Channel bull blenny	MODERN SPECIES	14	pacc1 (ENSCGOG00000006668)	nenf (ENSCGOG00000006666)	ezra (ENSCGOG00000006128)	ENSCGOG00000006120	marc1 (ENSCGOG00000006106)	HHIPL2 (ENSCGOG00000006087)	wdr32 (ENSCGOG00000006058)	CPXM1 (ENSCGOG00000005960)	ENSCGOG00000005770	ube2d3 (ENSCGOG00000005351)	manba (ENSCGOG00000005310)	SLC39A8 (ENSCGOG00000005306)	ENSCGOG00000005303	DCTN1 (ENSCGOG00000002902)	ENSCGOG00000002599	ENSCGOG00000022973 ##22	si:dkey-33c12.3 (ENSCGOG00000022972)	mrps26 (ENSCGOG00000022970)	loxl3b (ENSCGOG00000022662)	pank2 (ENSCGOG00000022634)	ENSCGOG00000022632	ENSCGOG00000022631	ENSCGOG00000022630	ENSCGOG00000022629	sfxn5a (ENSCGOG00000022628) ##25	emx1 (ENSCGOG00000022627)	noto (ENSCGOG00000022626)	ENSCGOG00000022621	ap5s1 (ENSCGOG00000022617)	ENSCGOG00000022616	gfra4a (ENSCGOG00000022614)
Pike perch	MODERN SPECIES	24	pacc1 (ENSSLUG00000019413)	nenf (ENSSLUG00000019410)	ezra (ENSSLUG00000018606)	ENSSLUG00000018555	marc1 (ENSSLUG00000018547)	HHIPL2 (ENSSLUG00000018509)	wdr32 (ENSSLUG00000018496)	CPXM1 (ENSSLUG00000018346)	ENSSLUG00000018304	ube2d3 (ENSSLUG00000018189)	manba (ENSSLUG00000018161)	SLC39A8 (ENSSLUG00000018153)	ENSSLUG00000018149	DCTN1 (ENSSLUG00000012994)	si:dkey-33c12.4 (ENSSLUG00000012765)	ENSSLUG00000012760 ##22	si:dkey-33c12.3 (ENSSLUG00000012756)	mrps26 (ENSSLUG00000012750)	loxl3b (ENSSLUG00000012453)	pank2 (ENSSLUG00000012391)	ENSSLUG00000012338	ENSSLUG00000012276	ENSSLUG00000012264	ENSSLUG00000012260	sfxn5a (ENSSLUG00000012255) ##25	emx1 (ENSSLUG00000012244)	noto (ENSSLUG00000012242)	ENSSLUG00000012235	ap5s1 (ENSSLUG00000012229)	gfra4a (ENSSLUG00000012212)	ATRN (ENSSLUG00000010955)
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Gilthead seabream	MODERN SPECIES	7	nenf (ENSSAUG00010017830)	ezra (ENSSAUG00010017803)	ENSSAUG00010017801	marc1 (ENSSAUG00010017800)	HHIPL2 (ENSSAUG00010017799)	wdr32 (ENSSAUG00010017798)	CPXM1 (ENSSAUG00010017743)	ENSSAUG00010017738	ube2d3 (ENSSAUG00010017230)	manba (ENSSAUG00010017222)	SLC39A8 (ENSSAUG00010017219)	ENSSAUG00010017217	DCTN1 (ENSSAUG00010015594)	ENSSAUG00010015560	si:dkey-33c12.4 (ENSSAUG00010015557)	ENSSAUG00010015556 ##22	si:dkey-33c12.3 (ENSSAUG00010015555)	mrps26 (ENSSAUG00010015554)	loxl3b (ENSSAUG00010014286)	pank2 (ENSSAUG00010014272)	ENSSAUG00010014270	ENSSAUG00010014269	ENSSAUG00010014268	ENSSAUG00010014266	sfxn5a (ENSSAUG00010014264) ##25	emx1 (ENSSAUG00010014257)	noto (ENSSAUG00010014256)	CDC25B (ENSSAUG00010014253)	ap5s1 (ENSSAUG00010014251)	gfra4a (ENSSAUG00010014250)	ATRN (ENSSAUG00010023368)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Large yellow croaker	MODERN SPECIES	495	loxl3b (ENSLCRG00005014768)	si:dkey-33c12.3 (ENSLCRG00005015876)	ENSLCRG00005015880	ENSLCRG00005015883	ENSLCRG00005015884	ENSLCRG00005015886	GPR68 (ENSLCRG00005015920)	yipf6 (ENSLCRG00005015922)	ENSLCRG00005015923	ENSLCRG00005015924	dtd2 (ENSLCRG00005015927)	manba (ENSLCRG00005015930)	ENSLCRG00005015932	DCTN1 (ENSLCRG00005015935)	ENSLCRG00005016007	ENSLCRG00005016009 ##22	tyro3 (ENSLCRG00005016013)	ENSLCRG00005016143	ENSLCRG00005016150	ENSLCRG00005016156	ENSLCRG00005016162	ENSLCRG00005016164	ENSLCRG00005016166	ENSLCRG00005016167	lgals3b (ENSLCRG00005016168)	fbxo34 (ENSLCRG00005016169)	jmjd7 (ENSLCRG00005016170)	tbpl2 (ENSLCRG00005016177)	atg14 (ENSLCRG00005016181)	traf3 (ENSLCRG00005016184)	ENSLCRG00005016192
European seabass	MODERN SPECIES	2	capn3a (ENSDLAG00005015494)	ZNF106 (ENSDLAG00005018574)	pacc1 (ENSDLAG00005033552)	ezra (ENSDLAG00005018624)	ENSDLAG00005026501	ENSDLAG00005018701	ENSDLAG00005018722	ENSDLAG00005032551	ENSDLAG00005018851	ENSDLAG00005019470	ube2d3 (ENSDLAG00005019616)	manba (ENSDLAG00005019670)	ENSDLAG00005019804	ENSDLAG00005021748	si:dkey-33c12.4 (ENSDLAG00005021768)	ENSDLAG00005030771 ##22	ENSDLAG00005031384	mrps26 (ENSDLAG00005028572)	loxl3b (ENSDLAG00005021826)	pank2 (ENSDLAG00005022355)	ENSDLAG00005029721	ENSDLAG00005022372	RAB11FIP5 (ENSDLAG00005022373)	sfxn5a (ENSDLAG00005022377) ##25	emx1 (ENSDLAG00005030328)	noto (ENSDLAG00005030909)	ENSDLAG00005022395	ap5s1 (ENSDLAG00005022398)	gfra4a (ENSDLAG00005022401)	ENSDLAG00005022413	ENSDLAG00005022530
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT00940000173692	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352
Tetraodon	MODERN SPECIES	1	ZNF106 (ENSTNIG00000010530)	pacc1 (ENSTNIG00000010531)	nenf (ENSTNIG00000010532)	ezra (ENSTNIG00000010533)	ENSTNIG00000010534	marc1 (ENSTNIG00000000871)	marc1 (ENSTNIG00000010535)	wdr32 (ENSTNIG00000010536)	CPXM1 (ENSTNIG00000010537)	ENSTNIG00000010538	manba (ENSTNIG00000010539)	ENSTNIG00000010540	ENSTNIG00000000950	DCTN1 (ENSTNIG00000010541)	ENSTNIG00000010542	ENSTNIG00000010543 ##22	si:dkey-33c12.3 (ENSTNIG00000010544)	mrps26 (ENSTNIG00000001213)	loxl3b (ENSTNIG00000010545)	pank2 (ENSTNIG00000010546)	ENSTNIG00000010547	ENSTNIG00000010548	sfxn5a (ENSTNIG00000010549) ##25	emx1 (ENSTNIG00000010550)	noto (ENSTNIG00000010551)	CDC25B (ENSTNIG00000010552)	ap5s1 (ENSTNIG00000010553)	gfra4a (ENSTNIG00000010554)	ATRN (ENSTNIG00000010555)	EIF2AK3 (ENSTNIG00000010556)	rpia (ENSTNIG00000010557)
Fugu	MODERN SPECIES	11	ZNF106 (ENSTRUG00000007738)	nenf (ENSTRUG00000008057)	ezra (ENSTRUG00000008111)	ENSTRUG00000008667	marc1 (ENSTRUG00000008727)	wdr32 (ENSTRUG00000008886)	CPXM1 (ENSTRUG00000008974)	ENSTRUG00000009155	ube2d3 (ENSTRUG00000009326)	manba (ENSTRUG00000026390)	SLC39A8 (ENSTRUG00000017668)	ENSTRUG00000017663	DCTN1 (ENSTRUG00000028508)	ENSTRUG00000032540	ENSTRUG00000022374	ENSTRUG00000019839 ##22	si:dkey-33c12.3 (ENSTRUG00000017621)	ENSTRUG00000017608	emx1 (ENSTRUG00000032463)	noto (ENSTRUG00000017598)	cdc25b (ENSTRUG00000017584)	ap5s1 (ENSTRUG00000017581)	ENSTRUG00000032295	gfra4a (ENSTRUG00000031411)	ENSTRUG00000027485	ATRN (ENSTRUG00000001707)	rpia (ENSTRUG00000003878)	slc4a11 (ENSTRUG00000004080)	ENSTRUG00000022771	dnaaf9 (ENSTRUG00000027011)	ENSTRUG00000028684
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Zig-zag eel	MODERN SPECIES	14	pacc1 (ENSMAMG00000000127)	nenf (ENSMAMG00000025859)	ezra (ENSMAMG00000000125)	ENSMAMG00000000124	ENSMAMG00000000123	ENSMAMG00000000122	ENSMAMG00000000120	ENSMAMG00000000119	ENSMAMG00000000118	ube2d3 (ENSMAMG00000000117)	manba (ENSMAMG00000000116)	SLC39A8 (ENSMAMG00000000115)	ENSMAMG00000000114	ENSMAMG00000000113	si:dkey-33c12.4 (ENSMAMG00000000111)	ENSMAMG00000000110 ##22	ENSMAMG00000000109	mrps26 (ENSMAMG00000000108)	loxl3b (ENSMAMG00000000107)	pank2 (ENSMAMG00000000105)	ENSMAMG00000000104	ENSMAMG00000027101	ENSMAMG00000000102	emx1 (ENSMAMG00000000101)	noto (ENSMAMG00000000100)	ENSMAMG00000000099	ap5s1 (ENSMAMG00000000098)	gfra4a (ENSMAMG00000000097)	ENSMAMG00000000096	ENSMAMG00000000095	rpia (ENSMAMG00000000094)
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Siamese fighting fish	MODERN SPECIES	12	ARHGAP5 (ENSBSLG00000010599)	nenf (ENSBSLG00000010633)	ezra (ENSBSLG00000010702)	ENSBSLG00000010902	marc1 (ENSBSLG00000010916)	HHIPL2 (ENSBSLG00000010951)	wdr32 (ENSBSLG00000010980)	ENSBSLG00000011743	ube2d3 (ENSBSLG00000012040)	manba (ENSBSLG00000012156)	SLC39A8 (ENSBSLG00000012212)	ENSBSLG00000012224	ENSBSLG00000013035	ENSBSLG00000013071	si:dkey-33c12.4 (ENSBSLG00000013149)	NANOS1 (ENSBSLG00000013247) ##22	si:dkey-33c12.3 (ENSBSLG00000013263)	mrps26 (ENSBSLG00000013278)	loxl3b (ENSBSLG00000013418)	srp14 (ENSBSLG00000014402)	xgb (ENSBSLG00000014418)	ENSBSLG00000014430	ENSBSLG00000014438	spint1a (ENSBSLG00000014459)	ppp1r14d (ENSBSLG00000014469)	zfyve19 (ENSBSLG00000014474)	ENSBSLG00000014496	PAK6 (ENSBSLG00000014505)	ENSBSLG00000014518	PLCB2 (ENSBSLG00000014529)	INAFM2 (ENSBSLG00000014606)
Climbing perch	MODERN SPECIES	13	pacc1 (ENSATEG00000019312)	nenf (ENSATEG00000019292)	ezra (ENSATEG00000019236)	ENSATEG00000026817	MTARC2 (ENSATEG00000026060)	ENSATEG00000019177	ENSATEG00000019160	ENSATEG00000019114	ENSATEG00000019100	ube2d3 (ENSATEG00000019090)	manba (ENSATEG00000019029)	SLC39A8 (ENSATEG00000018981)	ENSATEG00000018958	ENSATEG00000018908	si:dkey-33c12.4 (ENSATEG00000018885)	ENSATEG00000018856 ##22	ENSATEG00000018850	mrps26 (ENSATEG00000018841)	loxl3b (ENSATEG00000018763)	pank2 (ENSATEG00000018731)	ENSATEG00000018718	ENSATEG00000018707	RAB11FIP5 (ENSATEG00000018693)	sfxn5a (ENSATEG00000018650) ##25	emx1 (ENSATEG00000018637)	noto (ENSATEG00000018628)	ENSATEG00000018533	ap5s1 (ENSATEG00000028095)	gfra4a (ENSATEG00000018486)	ENSATEG00000018402	ENSATEG00000018381
Carangaria	ANCESTRAL SPECIES	10	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Turbot	MODERN SPECIES	8	pacc1 (ENSSMAG00000008742)	nenf (ENSSMAG00000031684)	ezra (ENSSMAG00000008649)	ENSSMAG00000023354	ENSSMAG00000023135	ENSSMAG00000008625	ENSSMAG00000008600	ENSSMAG00000008570	ENSSMAG00000008512	ube2d3 (ENSSMAG00000008479)	manba (ENSSMAG00000008423)	SLC39A8 (ENSSMAG00000008412)	ENSSMAG00000008402	ENSSMAG00000008205	si:dkey-33c12.4 (ENSSMAG00000008147)	ENSSMAG00000008048 ##22	ENSSMAG00000008025	mrps26 (ENSSMAG00000007897)	loxl3b (ENSSMAG00000007916)	pank2 (ENSSMAG00000007851)	ENSSMAG00000007841	ENSSMAG00000007836	RAB11FIP5 (ENSSMAG00000007830)	sfxn5a (ENSSMAG00000007776) ##25	emx1 (ENSSMAG00000007754)	noto (ENSSMAG00000007744)	ENSSMAG00000007692	ap5s1 (ENSSMAG00000007672)	gfra4a (ENSSMAG00000007459)	ENSSMAG00000007222	ENSSMAG00000007109
Tongue sole	MODERN SPECIES		ARHGAP5 (ENSCSEG00000012946)	nubpl (ENSCSEG00000012929)	dtd2 (ENSCSEG00000012924)	ENSCSEG00000012914	yipf6 (ENSCSEG00000012909)	snapc1b (ENSCSEG00000012899)	ENSCSEG00000012895	SGPP1 (ENSCSEG00000012894)	wdr89 (ENSCSEG00000012892)	ppp2r5eb (ENSCSEG00000012877)	KCNH5 (ENSCSEG00000012857)	gphb5 (ENSCSEG00000012843)	ENSCSEG00000012833	ENSCSEG00000012817	esr2b (ENSCSEG00000012785)	ENSCSEG00000012772 ##22	si:dkey-33c12.3 (ENSCSEG00000012768)	mrps26 (ENSCSEG00000012756)	loxl3b (ENSCSEG00000012742)	pank2 (ENSCSEG00000012723)	ENSCSEG00000012659	ENSCSEG00000012649	dkc1 (ENSCSEG00000012633)	ENSCSEG00000012623	ENSCSEG00000012614	ENSCSEG00000012591	tecpr2 (ENSCSEG00000012558)	ankrd9 (ENSCSEG00000012553)	traf3 (ENSCSEG00000012530)	C5orf63 (ENSCSEG00000012521)	mipol1 (ENSCSEG00000012492)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Seriola	ANCESTRAL SPECIES	46						ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Yellowtail amberjack	MODERN SPECIES	3190	ENSSLDG00000010296	nusap1 (ENSSLDG00000010260)	golga5 (ENSSLDG00000010216)	rtf1 (ENSSLDG00000010133)	ndufaf1 (ENSSLDG00000010116)	HHIPL2 (ENSSLDG00000010088)	wdr32 (ENSSLDG00000010043)	CPXM1 (ENSSLDG00000009828)	ENSSLDG00000009750	ube2d3 (ENSSLDG00000009717)	manba (ENSSLDG00000009596)	SLC39A8 (ENSSLDG00000009554)	ENSSLDG00000009537	DCTN1 (ENSSLDG00000009480)	si:dkey-33c12.4 (ENSSLDG00000009448)	ENSSLDG00000009413 ##22	si:dkey-33c12.3 (ENSSLDG00000009400)	mrps26 (ENSSLDG00000009389)	loxl3b (ENSSLDG00000009269)	pank2 (ENSSLDG00000009186)	ENSSLDG00000009154	ENSSLDG00000009134	ENSSLDG00000009115	sfxn5a (ENSSLDG00000009102) ##25	emx1 (ENSSLDG00000009098)	noto (ENSSLDG00000009076)	CDC25B (ENSSLDG00000009029)	ap5s1 (ENSSLDG00000009012)	gfra4a (ENSSLDG00000008998)
Greater amberjack	MODERN SPECIES	62	fgfr3 (ENSSDUG00000003941)	ENSSDUG00000003927	foxi2 (ENSSDUG00000003922)	ENSSDUG00000003909	ENSSDUG00000003897	HHIPL2 (ENSSDUG00000003875)	wdr32 (ENSSDUG00000003847)	CPXM1 (ENSSDUG00000003604)	ENSSDUG00000003555	ube2d3 (ENSSDUG00000003535)	manba (ENSSDUG00000003513)	SLC39A8 (ENSSDUG00000003482)	ENSSDUG00000003470	DCTN1 (ENSSDUG00000003271)	si:dkey-33c12.4 (ENSSDUG00000003213)	ENSSDUG00000003196 ##22	si:dkey-33c12.3 (ENSSDUG00000003191)	mrps26 (ENSSDUG00000003187)	loxl3b (ENSSDUG00000003095)	pank2 (ENSSDUG00000003056)	ENSSDUG00000003021	ENSSDUG00000003009	RAB11FIP5 (ENSSDUG00000002997)	sfxn5a (ENSSDUG00000002936) ##25	emx1 (ENSSDUG00000002929)	noto (ENSSDUG00000002923)	CDC25B (ENSSDUG00000002868)	ap5s1 (ENSSDUG00000002841)	gfra4a (ENSSDUG00000002798)	ATRN (ENSSDUG00000002730)	EIF2AK3 (ENSSDUG00000002716)
Barramundi perch	MODERN SPECIES	223	nenf (ENSLCAG00010011047)	ezra (ENSLCAG00010011165)	ENSLCAG00010011888	MTARC2 (ENSLCAG00010011892)	HHIPL2 (ENSLCAG00010011896)	wdr32 (ENSLCAG00010011905)	ENSLCAG00010011913	CPXM1 (ENSLCAG00010011919)	ENSLCAG00010011932	ube2d3 (ENSLCAG00010012001)	manba (ENSLCAG00010012237)	SLC39A8 (ENSLCAG00010012240)	ENSLCAG00010012243	DCTN1 (ENSLCAG00010012467)	si:dkey-33c12.4 (ENSLCAG00010013141)	ENSLCAG00010013144 ##22	si:dkey-33c12.3 (ENSLCAG00010013146)	mrps26 (ENSLCAG00010013147)	loxl3b (ENSLCAG00010013151)	pank2 (ENSLCAG00010013156)	ENSLCAG00010013158	ENSLCAG00010013161	ENSLCAG00010013165	sfxn5a (ENSLCAG00010013167) ##25	emx1 (ENSLCAG00010013168)	noto (ENSLCAG00010013170)	ENSLCAG00010013171	ap5s1 (ENSLCAG00010013173)	gfra4a (ENSLCAG00010013174)
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b.h	ENSGT00940000155378.c.a	ENSGT00390000011067.C	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT01070000253760.b.a.a.a.b.a.a.a.a.a.a.b	ENSGT00940000155745	ENSGT00940000158876	ENSGT00390000004208.j	ENSGT00390000005743
Oryzias_a	ANCESTRAL SPECIES	29	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b.h.a	ENSGT00950000182932.A.b.a.b.h.b	ENSGT00940000155378.c.a	ENSGT00390000011067.C	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT01070000253760.b.a.a.a.b.a.a.a.a.a.a.b	ENSGT00940000155745	ENSGT00940000158876	ENSGT00390000004208.j	ENSGT00390000005743
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	4399																ENSOSIG00000005529 ##22
Chinese medaka	MODERN SPECIES	747															ENSOSIG00000021618	ENSOSIG00000021616 ##22	si:dkey-33c12.3 (ENSOSIG00000021615)	loxl3b (ENSOSIG00000021614)
Japanese Medaka HdrR	MODERN SPECIES	14	MTARC2 (ENSORLG00000018149)	HHIPL2 (ENSORLG00000018151)	wdr32 (ENSORLG00000018154)	ENSORLG00000018155	ENSORLG00000018158	ube2d3 (ENSORLG00000027618)	manba (ENSORLG00000018166)	SLC39A8 (ENSORLG00000018167)	ENSORLG00000018169	ENSORLG00000018170	ENSORLG00000026473	DCTN1 (ENSORLG00000018173)	ENSORLG00000024689	dynlrb2 (ENSORLG00000027746)	si:dkey-33c12.4 (ENSORLG00000029651)	nanos1 (ENSORLG00000027849) ##22	si:dkey-33c12.3 (ENSORLG00000018181)	mrps26 (ENSORLG00000022499)	loxl3b (ENSORLG00000018185)	pank2 (ENSORLG00000018187)	ENSORLG00000018188	ENSORLG00000018190	ENSORLG00000029383	emx1 (ENSORLG00000022620)	noto (ENSORLG00000018195)	ENSORLG00000018198	ENSORLG00000027908	wdr35 (ENSORLG00000018203)	fosl2 (ENSORLG00000023079)	babam2 (ENSORLG00000018206)	rbks (ENSORLG00000018207)
Oryzias_b	ANCESTRAL SPECIES	44															ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT01070000253760.b.a.a.a.b.a.a.a.a.a.a.b	ENSGT00940000155745	ENSGT00940000158876	ENSGT00390000004208.j	ENSGT00390000005743
Indian medaka	MODERN SPECIES		rbks (ENSOMEG00000009584)	babam2 (ENSOMEG00000009538)	fosl2 (ENSOMEG00000009493)	loxl3b (ENSOMEG00000009459)	mrps26 (ENSOMEG00000009374)	pank2 (ENSOMEG00000009357)	ENSOMEG00000009327	ENSOMEG00000009273	ENSOMEG00000009212	emx1 (ENSOMEG00000000227)	noto (ENSOMEG00000009177)	CDC25B (ENSOMEG00000009142)	ENSOMEG00000009116	wdr35 (ENSOMEG00000009064)	ENSOMEG00000008913	ENSOMEG00000008866 ##22	si:dkey-33c12.3 (ENSOMEG00000008857)	ENSOMEG00000008848	dynlrb2 (ENSOMEG00000008817)	DCTN1 (ENSOMEG00000008657)	ENSOMEG00000008326	ENSOMEG00000008311	SLC39A8 (ENSOMEG00000008299)	manba (ENSOMEG00000008274)	ube2d3 (ENSOMEG00000000201)	ENSOMEG00000008177	CPXM1 (ENSOMEG00000008135)	wdr32 (ENSOMEG00000008107)	HHIPL2 (ENSOMEG00000008010)	MTARC2 (ENSOMEG00000007908)	ENSOMEG00000007888
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
Poecilia	ANCESTRAL SPECIES	44	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121
NAME_6	ANCESTRAL SPECIES	3	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178
Sailfin molly	MODERN SPECIES	830															si:dkey-33c12.4 (ENSPLAG00000022537)	ENSPLAG00000022525 ##22	si:dkey-33c12.3 (ENSPLAG00000022501)	mrps26 (ENSPLAG00000022482)	loxl3b (ENSPLAG00000022475)	pank2 (ENSPLAG00000022432)	ENSPLAG00000022426	ENSPLAG00000022423	RAB11FIP5 (ENSPLAG00000022408)	sfxn5a (ENSPLAG00000022398) ##25	emx1 (ENSPLAG00000022391)	noto (ENSPLAG00000022383)
Amazon molly	MODERN SPECIES	491	ezra (ENSPFOG00000007131)	ENSPFOG00000007340	marc1 (ENSPFOG00000007365)	HHIPL2 (ENSPFOG00000007529)	wdr32 (ENSPFOG00000007659)	CPXM1 (ENSPFOG00000007806)	ENSPFOG00000007984	ube2d3 (ENSPFOG00000008180)	manba (ENSPFOG00000008206)	SLC39A8 (ENSPFOG00000008619)	ENSPFOG00000008696	ENSPFOG00000020007	DCTN1 (ENSPFOG00000008720)	ENSPFOG00000022918	si:dkey-33c12.4 (ENSPFOG00000009143)	ENSPFOG00000020008 ##22	si:dkey-33c12.3 (ENSPFOG00000009210)	mrps26 (ENSPFOG00000009251)	loxl3b (ENSPFOG00000009296)	pank2 (ENSPFOG00000009622)	ENSPFOG00000009715	ENSPFOG00000020009	RAB11FIP5 (ENSPFOG00000022278)	sfxn5a (ENSPFOG00000009748) ##25	emx1 (ENSPFOG00000009935)	noto (ENSPFOG00000009939)	ENSPFOG00000009958	ap5s1 (ENSPFOG00000010079)
Guppy	MODERN SPECIES	453	nenf (ENSPREG00000008134)	ENSPREG00000008126	ezra (ENSPREG00000008103)	ENSPREG00000008089	marc1 (ENSPREG00000008078)	HHIPL2 (ENSPREG00000008044)	wdr32 (ENSPREG00000008019)	CPXM1 (ENSPREG00000008001)	ENSPREG00000007991	ube2d3 (ENSPREG00000007494)	manba (ENSPREG00000007400)	SLC39A8 (ENSPREG00000007376)	ENSPREG00000007357	ENSPREG00000007345	DCTN1 (ENSPREG00000007253)	NANOS1 (ENSPREG00000007213) ##22	si:dkey-33c12.3 (ENSPREG00000007200)	mrps26 (ENSPREG00000007165)	loxl3b (ENSPREG00000007134)	pank2 (ENSPREG00000007099)	ENSPREG00000007080	ENSPREG00000007069	RAB11FIP5 (ENSPREG00000007054)	sfxn5a (ENSPREG00000007011) ##25	emx1 (ENSPREG00000006945)	noto (ENSPREG00000006929)	CDC25B (ENSPREG00000006892)	ap5s1 (ENSPREG00000006882)	gfra4a (ENSPREG00000006867)	ATRN (ENSPREG00000006804)	EIF2AK3 (ENSPREG00000006747)
Platyfish	MODERN SPECIES	10	ENSXMAG00000005736	noto (ENSXMAG00000005732)	emx1 (ENSXMAG00000020883)	sfxn5a (ENSXMAG00000005696) ##25	ENSXMAG00000020907	ENSXMAG00000024920	ENSXMAG00000017745	ENSXMAG00000022928	ENSXMAG00000022874	ENSXMAG00000022553	ENSXMAG00000024346	ENSXMAG00000028862	ENSXMAG00000028532	DCTN1 (ENSXMAG00000018541)	si:dkey-33c12.4 (ENSXMAG00000018535)	NANOS1 (ENSXMAG00000019985) ##22	si:dkey-33c12.3 (ENSXMAG00000018528)	mrps26 (ENSXMAG00000025028)	loxl3b (ENSXMAG00000018497)	pank2 (ENSXMAG00000018493)	ENSXMAG00000022985	ENSXMAG00000021583	ENSXMAG00000029472	ENSXMAG00000018489	ENSXMAG00000007459	BTBD6 (ENSXMAG00000027382)	brf1a (ENSXMAG00000018476)	zfyve21 (ENSXMAG00000025110)	klc1a (ENSXMAG00000018455)	coa8 (ENSXMAG00000018452)	bag5 (ENSXMAG00000018450)
NAME_4	ANCESTRAL SPECIES	29	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a
Sheepshead minnow	MODERN SPECIES	1528																ENSCVAG00000019077 ##22	si:dkey-33c12.3 (ENSCVAG00000019052)	mrps26 (ENSCVAG00000019048)	loxl3b (ENSCVAG00000019040)	pank2 (ENSCVAG00000018942)	ENSCVAG00000018907	ENSCVAG00000018902
Mummichog	MODERN SPECIES	733															si:dkey-33c12.4 (ENSFHEG00000005521)	ENSFHEG00000005548 ##22	si:dkey-33c12.3 (ENSFHEG00000005565)	mrps26 (ENSFHEG00000005576)	loxl3b (ENSFHEG00000005625)	pank2 (ENSFHEG00000005655)	ENSFHEG00000005678	ENSFHEG00000005691
Aplocheiloidei	ANCESTRAL SPECIES	29	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000166659
Turquoise killifish	MODERN SPECIES	1625	NENF (ENSNFUG00015009824)	ENSNFUG00015009832	marc1 (ENSNFUG00015009847)	HHIPL2 (ENSNFUG00015009870)	WDR32 (ENSNFUG00015009896)	CPXM1 (ENSNFUG00015009949)	ENSNFUG00015009992	UBE2D2 (ENSNFUG00015010056)	ENSNFUG00015010260	MANBA (ENSNFUG00015010267)	SLC39A8 (ENSNFUG00015010290)	Nfu_g_1_021829 (ENSNFUG00015010298)	Nfu_g_1_021936 (ENSNFUG00015010305)	DCTN1 (ENSNFUG00015010356)	ENSNFUG00015010572	ENSNFUG00015010593 ##22	Nfu_g_1_021778 (ENSNFUG00015010598)	loxl3b (ENSNFUG00015010635)	PANK2 (ENSNFUG00015010816)	ENSNFUG00015010859	ENSNFUG00015010878	ENSNFUG00015010885	si:dkey-177p2.6 (ENSNFUG00015010892)	cdca4 (ENSNFUG00015010900)	ahsa1b (ENSNFUG00015010902)	LARP1B (ENSNFUG00015010949)	PGRMC2 (ENSNFUG00015011040)	asmt2 (ENSNFUG00015011105)	ENSNFUG00015011180	jade1 (ENSNFUG00015011192)	nsd2 (ENSNFUG00015011241)
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Pomacentridae	ANCESTRAL SPECIES	22	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Pomacentridae_A	ANCESTRAL SPECIES	31	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a.e	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000165336.a.a.a.h	ENSGT00940000160491.d.a
Amphiprion	ANCESTRAL SPECIES	27	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a.e	ENSGT00940000158248.a	ENSGT00940000165578	ENSGT00940000161139	ENSGT00390000012666	ENSGT00940000156141.A	ENSGT00940000165044	ENSGT00940000153169.A.b.b.e.a	ENSGT00390000001670	ENSGT00940000158926	ENSGT00950000182932.A.b.a.b	ENSGT00940000155378.c.a	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000165336.a.a.a.h.b	ENSGT00940000160491.d.a
Clown anemonefish	MODERN SPECIES	2340															si:dkey-33c12.4 (ENSAOCG00000020066)	ENSAOCG00000020120 ##22	si:dkey-33c12.3 (ENSAOCG00000002439)	mrps26 (ENSAOCG00000020131)	loxl3b (ENSAOCG00000020175)	pank2 (ENSAOCG00000020220)	ENSAOCG00000020225	ENSAOCG00000020251
Orange clownfish	MODERN SPECIES	9	ENSAPEG00000006251	ENSAPEG00000006240	pacc1 (ENSAPEG00000006229)	nenf (ENSAPEG00000006202)	ezra (ENSAPEG00000006184)	ENSAPEG00000006171	marc1 (ENSAPEG00000006161)	HHIPL2 (ENSAPEG00000006131)	wdr32 (ENSAPEG00000006099)	CPXM1 (ENSAPEG00000006056)	ENSAPEG00000006007	ube2d3 (ENSAPEG00000005990)	manba (ENSAPEG00000005971)	SLC39A8 (ENSAPEG00000005921)	DCTN1 (ENSAPEG00000005690)	ENSAPEG00000005585 ##22	si:dkey-33c12.3 (ENSAPEG00000005562)	mrps26 (ENSAPEG00000005553)	loxl3b (ENSAPEG00000005513)	pank2 (ENSAPEG00000005463)	ENSAPEG00000005450	ENSAPEG00000005438	RAB11FIP5 (ENSAPEG00000005419)	sfxn5a (ENSAPEG00000005348) ##25	emx1 (ENSAPEG00000005317)	noto (ENSAPEG00000005298)	CDC25B (ENSAPEG00000005167)	ap5s1 (ENSAPEG00000005155)	selenou1b (ENSAPEG00000005140)	gfra4a (ENSAPEG00000005102)	ATRN (ENSAPEG00000005019)
Spiny chromis	MODERN SPECIES	40	nenf (ENSAPOG00000004619)	ezra (ENSAPOG00000004643)	ENSAPOG00000004657	MTARC2 (ENSAPOG00000004670)	HHIPL2 (ENSAPOG00000004690)	wdr32 (ENSAPOG00000004730)	CPXM1 (ENSAPOG00000004784)	ENSAPOG00000004820	ube2d3 (ENSAPOG00000004837)	manba (ENSAPOG00000004855)	SLC39A8 (ENSAPOG00000004883)	ENSAPOG00000004898	ENSAPOG00000004915	DCTN1 (ENSAPOG00000005014)	si:dkey-33c12.4 (ENSAPOG00000005058)	ENSAPOG00000005093 ##22	si:dkey-33c12.3 (ENSAPOG00000005112)	mrps26 (ENSAPOG00000005118)	loxl3b (ENSAPOG00000005233)	pank2 (ENSAPOG00000005285)	ENSAPOG00000005315	ENSAPOG00000005328	RAB11FIP5 (ENSAPOG00000005351)	sfxn5a (ENSAPOG00000005445) ##25	emx1 (ENSAPOG00000005459)	noto (ENSAPOG00000005478)	CDC25B (ENSAPOG00000005494)	ap5s1 (ENSAPOG00000005499)	selenou1b (ENSAPOG00000005517)
Bicolor damselfish	MODERN SPECIES	375																NANOS1 (ENSSPAG00000014569) ##22	si:dkey-33c12.3 (ENSSPAG00000014572)	mrps26 (ENSSPAG00000014577)	loxl3b (ENSSPAG00000014602)	pank2 (ENSSPAG00000014665)	ENSSPAG00000014692	ENSSPAG00000014706	ENSSPAG00000014719	ENSSPAG00000014725	sfxn5a (ENSSPAG00000014736) ##25	emx1 (ENSSPAG00000014773)	noto (ENSSPAG00000014783)	CDC25B (ENSSPAG00000014809)	ap5s1 (ENSSPAG00000014829)	ENSSPAG00000014839	gfra4a (ENSSPAG00000014849)
Cichlidae	ANCESTRAL SPECIES	37													ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00390000018895.b	ENSGT00940000155718.a	ENSGT00390000003245	ENSGT00940000153375	ENSGT00390000018108.a	ENSGT00940000170349	ENSGT01030000234567.A.a.a.a.a.a	ENSGT00390000005318.b.b.b.a	ENSGT00940000158613.l	ENSGT00390000017767.b.b.b	ENSGT00940000172724.d	ENSGT00940000165614.x.a.b.b	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00500000044870.b.h	ENSGT00390000018895.b	ENSGT00940000155718.a	ENSGT00390000003245	ENSGT00940000153375	ENSGT00390000018108.a	ENSGT00940000170349	ENSGT01030000234567.A.a.a.a.a.a	ENSGT00390000005318.b.b.b.a	ENSGT00940000158613.l	ENSGT00390000017767.b.b.b	ENSGT00940000172724.d.a.b	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Haplochromini	ANCESTRAL SPECIES	42									ENSGT00390000017767.a.a	ENSGT00940000165614.x.a.a	ENSGT00940000172724.c	ENSGT00940000165614.w	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
Burton s mouthbrooder	MODERN SPECIES	378						ENSHBUG00000011542	ENSHBUG00000011201	ENSHBUG00000011185	ENSHBUG00000011162	ENSHBUG00000011146	ENSHBUG00000010969	ENSHBUG00000010954	iars2 (ENSHBUG00000010898)	rab3gap2 (ENSHBUG00000000290)	si:dkey-33c12.4 (ENSHBUG00000010735)	ENSHBUG00000010726 ##22	si:dkey-33c12.3 (ENSHBUG00000010692)	mrps26 (ENSHBUG00000010675)	loxl3b (ENSHBUG00000010639)	pank2 (ENSHBUG00000010594)	ENSHBUG00000010545	ENSHBUG00000010476	RAB11FIP5 (ENSHBUG00000010460)	sfxn5a (ENSHBUG00000010441) ##25	emx1 (ENSHBUG00000010432)	noto (ENSHBUG00000010421)	CDC25B (ENSHBUG00000010407)	gfra4a (ENSHBUG00000010396)	ATRN (ENSHBUG00000010380)	EIF2AK3 (ENSHBUG00000010330)	rpia (ENSHBUG00000000267)
Haplochromini_A	ANCESTRAL SPECIES	44									ENSGT00390000017767.a.a	ENSGT00940000165614.x.a.a	ENSGT00940000172724.c	ENSGT00940000165614.w	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT00940000178332	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346
P. nyererei	MODERN SPECIES	324									ENSPNYG00000018953	ENSPNYG00000018912	ENSPNYG00000018890	ENSPNYG00000018873	iars2 (ENSPNYG00000018793)	rab3gap2 (ENSPNYG00000018342)	si:dkey-33c12.4 (ENSPNYG00000018262)	ENSPNYG00000018230 ##22	si:dkey-33c12.3 (ENSPNYG00000018211)	mrps26 (ENSPNYG00000018207)	loxl3b (ENSPNYG00000018176)	ENSPNYG00000018156	ENSPNYG00000018142	ENSPNYG00000018134	ENSPNYG00000018126	sfxn5a (ENSPNYG00000018107) ##25	emx1 (ENSPNYG00000018039)	noto (ENSPNYG00000018017)	cdc25b (ENSPNYG00000017961)	ap5s1 (ENSPNYG00000017952)	gfra4a (ENSPNYG00000017873)	ATRN (ENSPNYG00000017794)	EIF2AK3 (ENSPNYG00000017747)
Haplochromini_B	ANCESTRAL SPECIES	55											ENSGT00940000165614.x.b	ENSGT00940000165614.w	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.a ##22	ENSGT00940000165724	ENSGT00390000008453	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772	ENSGT01030000234518.A.a.a	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b ##25	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000179604	ENSGT00940000160491.d.a	ENSGT00940000157346
Eastern happy	MODERN SPECIES	10	ENSACLG00000015177	ENSACLG00000015173	ENSACLG00000015157	ENSACLG00000015107	ENSACLG00000015075	ENSACLG00000015059	ENSACLG00000015037	ENSACLG00000014978	ENSACLG00000014859	ENSACLG00000014848	ENSACLG00000014829	iars2 (ENSACLG00000014763)	rab3gap2 (ENSACLG00000014275)	si:dkey-33c12.4 (ENSACLG00000014192)	ENSACLG00000014166	ENSACLG00000014135 ##22	si:dkey-33c12.3 (ENSACLG00000014116)	mrps26 (ENSACLG00000014099)	ENSACLG00000014096	loxl3b (ENSACLG00000013885)	pank2 (ENSACLG00000013827)	ENSACLG00000013813	ENSACLG00000013793	ENSACLG00000013789	RAB11FIP5 (ENSACLG00000013769)	sfxn5a (ENSACLG00000013646) ##25	emx1 (ENSACLG00000013635)	noto (ENSACLG00000013615)	ENSACLG00000013544	ap5s1 (ENSACLG00000013536)	ENSACLG00000013530
Zebra mbuna	MODERN SPECIES	60								ENSMZEG00005010730	ENSMZEG00005010739	ENSMZEG00005010749	ENSMZEG00005010776	ENSMZEG00005013550	iars2 (ENSMZEG00005014151)	rab3gap2 (ENSMZEG00005014221)	si:dkey-33c12.4 (ENSMZEG00005014276)	ENSMZEG00005014293 ##22	si:dkey-33c12.3 (ENSMZEG00005014642)	mrps26 (ENSMZEG00005014646)	loxl3b (ENSMZEG00005014658)	pank2 (ENSMZEG00005014719)	ENSMZEG00005014743	ENSMZEG00005014748	ENSMZEG00005014757	sfxn5a (ENSMZEG00005014771) ##25	emx1 (ENSMZEG00005014790)	noto (ENSMZEG00005014799)	CDC25B (ENSMZEG00005014814)	ap5s1 (ENSMZEG00005014824)
Lyretail cichlid	MODERN SPECIES	299	ENSNBRG00000000302	MFSD2A (ENSNBRG00000000274)	mycla (ENSNBRG00000000251)	NT5C1A (ENSNBRG00000000242)	ENSNBRG00000000234	ENSNBRG00000000231	ENSNBRG00000024220	ENSNBRG00000024217	ENSNBRG00000024214	ENSNBRG00000024213	ENSNBRG00000024211	ENSNBRG00000024209	ENSNBRG00000024206	iars2 (ENSNBRG00000024204)	rab3gap2 (ENSNBRG00000024178)	ENSNBRG00000024149 ##22	si:dkey-33c12.3 (ENSNBRG00000024146)	mrps26 (ENSNBRG00000024142)	loxl3b (ENSNBRG00000024138)	pank2 (ENSNBRG00000024129)	ENSNBRG00000024125	ENSNBRG00000024121	ENSNBRG00000024120	sfxn5a (ENSNBRG00000024115) ##25	emx1 (ENSNBRG00000024109)	noto (ENSNBRG00000024104)	ENSNBRG00000024099	ap5s1 (ENSNBRG00000024096)	ENSNBRG00000024090	gfra4a (ENSNBRG00000024085)	ATRN (ENSNBRG00000024070)
Nile tilapia	MODERN SPECIES	10	ENSONIG00000028799	ENSONIG00000038881	MFSD2A (ENSONIG00000012234)	mycla (ENSONIG00000042921)	NT5C1A (ENSONIG00000012246)	ENSONIG00000030164	ENSONIG00000012249	ENSONIG00000043157	ENSONIG00000012251	ENSONIG00000012250	ENSONIG00000031305	ENSONIG00000035878	iars2 (ENSONIG00000012252)	rab3gap2 (ENSONIG00000012257)	si:dkey-33c12.4 (ENSONIG00000028483)	ENSONIG00000021034 ##22	si:dkey-33c12.3 (ENSONIG00000012264)	mrps26 (ENSONIG00000012266)	loxl3b (ENSONIG00000012267)	pank2 (ENSONIG00000012276)	ENSONIG00000012278	ENSONIG00000012279	ENSONIG00000031955	ENSONIG00000012281	emx1 (ENSONIG00000031341)	noto (ENSONIG00000012292)	CDC25B (ENSONIG00000012295)	ap5s1 (ENSONIG00000012300)	ENSONIG00000028241	ENSONIG00000040004	gfra4a (ENSONIG00000041946)
Midas cichlid	MODERN SPECIES	364													iars2 (ENSACIG00000004676)	rab3gap2 (ENSACIG00000004724)	ENSACIG00000004801	ENSACIG00000004805 ##22	si:dkey-33c12.3 (ENSACIG00000004840)	mrps26 (ENSACIG00000004862)	loxl3b (ENSACIG00000004912)	pank2 (ENSACIG00000004938)	ENSACIG00000004960	ENSACIG00000004976	ENSACIG00000004987	sfxn5a (ENSACIG00000005012) ##25	emx1 (ENSACIG00000005028)	noto (ENSACIG00000005040)	CDC25B (ENSACIG00000005052)	ap5s1 (ENSACIG00000005088)
Cod	MODERN SPECIES	18	nenf (ENSGMOG00000013134)	ezra (ENSGMOG00000013113)	ENSGMOG00000031655	ENSGMOG00000027445	ENSGMOG00000013095	ENSGMOG00000013079	ENSGMOG00000013057	ENSGMOG00000013050	ENSGMOG00000025184	manba (ENSGMOG00000013024)	ENSGMOG00000013008	ENSGMOG00000032728	ENSGMOG00000030150	ENSGMOG00000014304	ENSGMOG00000001292	ENSGMOG00000020465 ##22	ENSGMOG00000034444	mrps26 (ENSGMOG00000029210)	loxl3b (ENSGMOG00000015943)	pank2 (ENSGMOG00000015936)	ENSGMOG00000015933	ENSGMOG00000025282	sfxn5a (ENSGMOG00000015884) ##25	emx1 (ENSGMOG00000015872)	noto (ENSGMOG00000015860)	ENSGMOG00000029495	ENSGMOG00000025271	ENSGMOG00000000236	ap5s1 (ENSGMOG00000030914)	ENSGMOG00000005213	ENSGMOG00000005262
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.b ##22
Coelacanth	MODERN SPECIES	2626																nanos1 (ENSLACG00000005166) ##22	lbx2 (ENSLACG00000003538)
Actinopterygii	ANCESTRAL SPECIES	262												ENSGT01030000234518.A.a.a	ENSGT00940000165044	ENSGT00940000170259	ENSGT00940000161036.A	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165724	ENSGT00390000008453	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000157626	ENSGT00510000049120
Reedfish	MODERN SPECIES	13	ENSECRG00000004794	ENSECRG00000006073	ENSECRG00000006081	ENSECRG00000006089	ENSECRG00000006094	ENSECRG00000006102	ENSECRG00000006126	ENSECRG00000006138	ENSECRG00000006146	dctn1a (ENSECRG00000006170)	PCED1A (ENSECRG00000006240)	ENSECRG00000006421	ENSECRG00000007706	ENSECRG00000007725	ENSECRG00000007741	nanos1 (ENSECRG00000013983) ##22	lbx2 (ENSECRG00000014002)	pcgf1 (ENSECRG00000014056)	fgf24 (ENSECRG00000014166)	tlx2 (ENSECRG00000014192)	kazald2 (ENSECRG00000014358)	ENSECRG00000015375	ENSECRG00000015417	ENSECRG00000015480	spata18 (ENSECRG00000015599)	si:dkey-33c12.3 (ENSECRG00000015647)	mrps26 (ENSECRG00000015668)	aup1 (ENSECRG00000015692)	si:dkey-33c12.12 (ENSECRG00000015749)	loxl3a (ENSECRG00000015783)	ENSECRG00000015811
Neopterygii	ANCESTRAL SPECIES	192								ENSGT00940000155378.d	ENSGT00390000002231	ENSGT00940000158971	ENSGT00940000153123.B	ENSGT00940000179269	ENSGT00940000165044	ENSGT00940000170259	ENSGT00940000161036.A	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000165724	ENSGT00390000008453	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000157626	ENSGT01030000234772
Spotted gar	MODERN SPECIES	670	ADISSP (ENSLOCG00000001593)	vax2 (ENSLOCG00000001602)	ENSLOCG00000001621	tex261 (ENSLOCG00000001643)	ENSLOCG00000001657	ENSLOCG00000001669	ENSLOCG00000001693	CPXM1 (ENSLOCG00000001718)	ENSLOCG00000017470	dctn1a (ENSLOCG00000001745)	fam113 (ENSLOCG00000001799)	ADAM33 (ENSLOCG00000001814)	ENSLOCG00000001832	ENSLOCG00000001848	ENSLOCG00000001861	nanos1 (ENSLOCG00000018172) ##22	lbx2 (ENSLOCG00000001890)	pcgf1 (ENSLOCG00000001907)	fgf24 (ENSLOCG00000001921)	npm1b (ENSLOCG00000001942)	tlx2 (ENSLOCG00000001968)	kazald2 (ENSLOCG00000001985)	si:dkey-33c12.3 (ENSLOCG00000002004)	ENSLOCG00000002014	ENSLOCG00000002036	mrps26 (ENSLOCG00000002051)	aup1 (ENSLOCG00000002068)	popdc2 (ENSLOCG00000002084)	cox17 (ENSLOCG00000002098)	si:dkey-112g5.13 (ENSLOCG00000002104)	loxl3a (ENSLOCG00000002120)
Osteoglossocephalai	ANCESTRAL SPECIES	323														ENSGT00940000170259	ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000008453	ENSGT00390000016110	ENSGT00940000154394.b.a.a.b.b
Osteoglossiformes	ANCESTRAL SPECIES	613															ENSGT00940000161036.A.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497.e
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	149																nanos1 (ENSPKIG00000000617) ##22	lbx2 (ENSPKIG00000000628)	PCGF1 (ENSPKIG00000000641)	fgf24 (ENSPKIG00000000666)	ENSPKIG00000000681	si:dkey-33c12.3 (ENSPKIG00000000695)	si:dkey-33c12.12 (ENSPKIG00000000701)	CPXM1 (ENSPKIG00000000727)	ENSPKIG00000000758	ENSPKIG00000000767	DCTN1 (ENSPKIG00000000855)	ENSPKIG00000001058	ENSPKIG00000001073	spcs3 (ENSPKIG00000001115)	vegfc (ENSPKIG00000001136)	ENSPKIG00000001157
P. kingsleyae	MODERN SPECIES	378																nanos1 (ENSPKIG00000019945) ##22	ENSPKIG00000019970	pcgf1 (ENSPKIG00000019995)	fgf24 (ENSPKIG00000020032)	npm1b (ENSPKIG00000020050)	tlx2 (ENSPKIG00000020072)	kazald2 (ENSPKIG00000020104)	mrps26 (ENSPKIG00000020131)	aup1 (ENSPKIG00000020155)	tubb4b (ENSPKIG00000020176)	loxl3a (ENSPKIG00000020201)	ENSPKIG00000020222	ENSPKIG00000020243	ENSPKIG00000020275	ENSPKIG00000020292	mif (ENSPKIG00000020304)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	16	mapk8a (ENSSFOG00015008818)	ENSSFOG00015008853	gdf10b (ENSSFOG00015008888)	gdf2 (ENSSFOG00015032267)	RBP3 (ENSSFOG00015008902)	ENSSFOG00015008952	UBTD1 (ENSSFOG00015032470)	mms19 (ENSSFOG00015008989)	zdhhc16b (ENSSFOG00015009023)	mettl18 (ENSSFOG00015031202)	EXOSC1 (ENSSFOG00015029106)	pgam1b (ENSSFOG00015009115)	rpia (ENSSFOG00015009127)	ENSSFOG00015009157	si:dkey-33c12.4 (ENSSFOG00015026587)	ENSSFOG00015009241 ##22	lbx2 (ENSSFOG00015029772)	PCGF1 (ENSSFOG00015009282)	fgf24 (ENSSFOG00015009316)	ENSSFOG00015026617	ENSSFOG00015026641	si:dkey-33c12.3 (ENSSFOG00015009342)	aup1 (ENSSFOG00015009364)	ENSSFOG00015025743	si:dkey-33c12.12 (ENSSFOG00015009425)	LOXL3 (ENSSFOG00015009874)	pank2 (ENSSFOG00015009972)	ENSSFOG00015009986	ENSSFOG00015009999	ENSSFOG00015010049	emx1 (ENSSFOG00015026732)
Asian bonytongue	MODERN SPECIES	20	slc30a9 (ENSSFOG00015006091)	gsr (ENSSFOG00015005713)	wdr32 (ENSSFOG00015005643)	DGKQ (ENSSFOG00015005508)	SLC39A8 (ENSSFOG00015005498)	ENSSFOG00015030210	ENSSFOG00015008358	si:ch211-165i18.2 (ENSSFOG00015005448)	ENSSFOG00015005427	ENSSFOG00015005383	CPXM1 (ENSSFOG00015005306)	ENSSFOG00015028984	dctn1a (ENSSFOG00015005234)	ADAM33 (ENSSFOG00015005203)	ENSSFOG00015005186	nanos1 (ENSSFOG00015031529) ##22	ENSSFOG00015005135	pcgf1 (ENSSFOG00015005089)	fgf24 (ENSSFOG00015005073)	npm1b (ENSSFOG00015005064)	tlx2 (ENSSFOG00015005040)	kazald2 (ENSSFOG00015024509)	mrps26 (ENSSFOG00015025476)	aup1 (ENSSFOG00015004967)	ENSSFOG00015028723	loxl3a (ENSSFOG00015004903)	ENSSFOG00015026418	ENSSFOG00015004880	mif (ENSSFOG00015004863)	ENSSFOG00015024450	ENSSFOG00015031080
Clupeocephala	ANCESTRAL SPECIES	264			ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154245.B	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.a.a.b	ENSGT01090000260003.a.b.b.a.a.a.a
Otomorpha	ANCESTRAL SPECIES	66	ENSGT00390000002137	ENSGT00390000000002.a.a.a.nb.a	ENSGT00940000157352.b	ENSGT00940000156077.g.a	ENSGT00670000098059.c.a	ENSGT00940000157489	ENSGT00940000162201.p	ENSGT00390000010950	ENSGT00940000164838.f	ENSGT00950000183035.b.e	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000165492.a.a	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000158157.d	ENSGT00940000161041
Otophysi	ANCESTRAL SPECIES	43	ENSGT00910000144269	ENSGT00390000013490	ENSGT00950000182856.a.a.b	ENSGT00940000158457	ENSGT00940000159063.e	ENSGT00940000153232.a.b.b	ENSGT00940000155599.i.a.a.l	ENSGT00390000015511	ENSGT00940000164838.f	ENSGT00950000183035.b.e.a	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000154909.b.a	ENSGT00940000166792	ENSGT00940000165076.b	ENSGT00940000155068.b	ENSGT00940000156168.B	ENSGT00940000159868.b	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000154394.b.a.b
Characiphysae	ANCESTRAL SPECIES	7	ENSGT00550000074935	ENSGT00390000013490	ENSGT00950000182856.a.a.b	ENSGT00940000158457	ENSGT00940000159063.e	ENSGT00940000153232.a.b.b	ENSGT00940000155599.i.a.a.l	ENSGT00390000015511	ENSGT00940000164838.f	ENSGT00950000183035.b.e.a	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000158157.d	ENSGT00940000161041	ENSGT00390000011639.o	ENSGT00940000156764.b	ENSGT00390000007539.a	ENSGT00620000087966.b	ENSGT00940000164608
Channel catfish	MODERN SPECIES	27	lrp2bp (ENSIPUG00000020645)	snx25 (ENSIPUG00000020587)	enpp6 (ENSIPUG00000020567)	irf2 (ENSIPUG00000020557)	casp3b (ENSIPUG00000020515)	cenpu (ENSIPUG00000020497)	ENSIPUG00000020496	ENSIPUG00000020485	ENSIPUG00000020480	ENSIPUG00000020461	GNPDA1 (ENSIPUG00000020441)	GUF1 (ENSIPUG00000020387)	ENSIPUG00000020363	GABRA4 (ENSIPUG00000020334)	AP1AR (ENSIPUG00000020283)	nanos1 (ENSIPUG00000020252) ##22	lbx1 (ENSIPUG00000020237)	pcgf1 (ENSIPUG00000020218)	ENSIPUG00000020212	fgf24 (ENSIPUG00000020197)	npm1b (ENSIPUG00000020165)	tlx2 (ENSIPUG00000020150)	kazald2 (ENSIPUG00000020140)	aup1 (ENSIPUG00000020112)	tubb4b (ENSIPUG00000020091)	Loxl3 (ENSIPUG00000020049)	KCTD8 (ENSIPUG00000020041)	BSCL2 (ENSIPUG00000020027)	ENSIPUG00000020018	nxf1a (ENSIPUG00000019958)	atg2a (ENSIPUG00000019878)
Characiphysae_b	ANCESTRAL SPECIES	7	ENSGT00550000074935	ENSGT00390000013490	ENSGT00950000182856.a.a.b	ENSGT00940000158457	ENSGT00940000159063.e	ENSGT00940000153232.a.b.b	ENSGT00940000155599.i.a.a.l	ENSGT00390000015511	ENSGT00940000164838.f	ENSGT00950000183035.b.e.a	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000158157.d	ENSGT00940000161041	ENSGT00390000011639.o	ENSGT00940000156764.b	ENSGT00390000007539.a	ENSGT00620000087966.b	ENSGT00940000164608
Characoidei	ANCESTRAL SPECIES	2	ENSGT00550000074935	ENSGT00390000013490	ENSGT00950000182856.a.a.b	ENSGT00940000158457	ENSGT00940000159063.e	ENSGT00940000153232.a.b.b	ENSGT00940000155599.i.a.a.l	ENSGT00390000015511	ENSGT00940000164838.f	ENSGT00950000183035.b.e.a	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156168.B	ENSGT00940000159868.b	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000158157.d	ENSGT00940000161041	ENSGT00390000011639.o	ENSGT00940000156764.b	ENSGT00390000007539.a
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	952																nanos1 (ENSAMXG00000030027) ##22
Mexicana tetra	MODERN SPECIES	16	lrp2bp (ENSAMXG00000005937)	snx25 (ENSAMXG00000005912)	enpp6 (ENSAMXG00000042587)	irf2 (ENSAMXG00000036672)	ENSAMXG00000034083	dhrs13l1 (ENSAMXG00000013473)	ENSAMXG00000025950	ENSAMXG00000043856	ENSAMXG00000005879	ENSAMXG00000040089	GUF1 (ENSAMXG00000005871)	ENSAMXG00000029805	GABRA2 (ENSAMXG00000039580)	gabra4 (ENSAMXG00000005855)	ap1ar (ENSAMXG00000005849)	nanos1 (ENSAMXG00000043091) ##22	lbx2 (ENSAMXG00000031000)	pcgf1 (ENSAMXG00000005832)	fgf24 (ENSAMXG00000005825)	npm1b (ENSAMXG00000042148)	tlx2 (ENSAMXG00000005815)	kazald2 (ENSAMXG00000005809)	aup1 (ENSAMXG00000029407)	ENSAMXG00000030398	loxl3a (ENSAMXG00000005786)	kctd8 (ENSAMXG00000035562)	bscl2l (ENSAMXG00000037290)	ENSAMXG00000005760	nxf1a (ENSAMXG00000005752)	ATG2A (ENSAMXG00000019134)	trmt112 (ENSAMXG00000036371)
Red-bellied piranha	MODERN SPECIES	97	lrp2bp (ENSPNAG00000024622)	snx25 (ENSPNAG00000024742)	enpp6 (ENSPNAG00000003847)	irf2 (ENSPNAG00000024804)	CASP3 (ENSPNAG00000004722)	CASP3 (ENSPNAG00000024845)	dhrs13l1 (ENSPNAG00000003850)	ENSPNAG00000024913	ENSPNAG00000024932	ENSPNAG00000025008	ENSPNAG00000025038	GUF1 (ENSPNAG00000025157)	GABRA2 (ENSPNAG00000005023)	gabra4 (ENSPNAG00000025276)	ap1ar (ENSPNAG00000025344)	nanos1 (ENSPNAG00000004874) ##22	lbx2 (ENSPNAG00000025424)	pcgf1 (ENSPNAG00000006700)	fgf24 (ENSPNAG00000025510)	npm1b (ENSPNAG00000005498)	tlx2 (ENSPNAG00000025586)
Electric eel	MODERN SPECIES	12	hmmr (ENSEEEG00000015530)	PIGG (ENSEEEG00000015532)	fnta (ENSEEEG00000015535)	lrp2bp (ENSEEEG00000015544)	snx25 (ENSEEEG00000015562)	enpp6 (ENSEEEG00000015839)	irf2 (ENSEEEG00000015844)	CASP3 (ENSEEEG00000015846)	ENSEEEG00000015849	ENSEEEG00000015851	GNPDA2 (ENSEEEG00000015852)	GUF1 (ENSEEEG00000015858)	ENSEEEG00000016025	gabra4 (ENSEEEG00000016030)	ap1ar (ENSEEEG00000016033)	nanos1 (ENSEEEG00000016035) ##22	lbx2 (ENSEEEG00000016036)	pcgf1 (ENSEEEG00000016039)	ENSEEEG00000016048	fgf24 (ENSEEEG00000016056)	npm1b (ENSEEEG00000016088)	tlx2 (ENSEEEG00000016089)	kazald2 (ENSEEEG00000016091)	aup1 (ENSEEEG00000016094)	tubb4b (ENSEEEG00000016096)	loxl3a (ENSEEEG00000016098)	kctd8 (ENSEEEG00000016100)	bscl2l (ENSEEEG00000016104)	ENSEEEG00000016108	nxf1a (ENSEEEG00000016126)	ATG2A (ENSEEEG00000016436)
Cyprinoidei	ANCESTRAL SPECIES	45	ENSGT00910000144269	ENSGT00390000013490	ENSGT00950000182856.a.a.b	ENSGT00940000158457	ENSGT00940000159063.e	ENSGT00940000153232.a.b.b	ENSGT00940000155599.i.a.a.l	ENSGT00390000015511	ENSGT00940000164838.f	ENSGT00950000183035.b.e.a	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.b.b.d	ENSGT00940000158157.d	ENSGT00940000161041	ENSGT00390000011639.o	ENSGT00940000156764.b	ENSGT00390000007539.a	ENSGT00620000087966.b	ENSGT00940000164608
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	171	ENSGT00550000074935.a	ENSGT00910000144269.f	ENSGT00390000013490	ENSGT00950000182856.a.a.b.c	ENSGT00940000158457.f	ENSGT00940000159063.e.b	ENSGT00940000153232.a.b.b.o.a	ENSGT00390000015511.k	ENSGT00940000164838.f.a	ENSGT00950000183035.b.e.a.b	ENSGT00390000014316.c.a.c	ENSGT00550000074940	ENSGT00940000157266.b.g	ENSGT00940000159024.f	ENSGT00940000167144.f	ENSGT00950000183135.B.a.b.g ##22	ENSGT00940000166497.c	ENSGT00940000159651.b	ENSGT00940000167002.f.a	ENSGT00940000164405.k.a	ENSGT00940000165256.h	ENSGT00530000063555.B.cd.a	ENSGT00390000016110.m	ENSGT00940000154394.b.a.b	ENSGT00980000199397	ENSGT00390000020276.mb.b	ENSGT00940000154394.b.a.a.b.b.d	ENSGT00940000158157.d	ENSGT00940000161041.e	ENSGT00390000011639.o.b	ENSGT00940000156764.b.a
Goldfish	MODERN SPECIES	5	fnta (ENSCARG00000005049)	SLC34A1 (ENSCARG00000005021)	rgs14a (ENSCARG00000004979)	ENSCARG00000004968	acsl1b (ENSCARG00000003591)	enpp6 (ENSCARG00000003487)	irf2 (ENSCARG00000003477)	CASP3 (ENSCARG00000003470)	ENSCARG00000003467	ENSCARG00000003460	GNPDA2 (ENSCARG00000003450)	GUF1 (ENSCARG00000003366)	ENSCARG00000002434	gabra4 (ENSCARG00000002223)	ap1ar (ENSCARG00000002182)	nanos1 (ENSCARG00000002159) ##22	lbx2 (ENSCARG00000002147)	pcgf1 (ENSCARG00000002101)	fgf24 (ENSCARG00000002073)	npm1b (ENSCARG00000002049)	tlx2 (ENSCARG00000002023)	kazald2 (ENSCARG00000002004)	aup1 (ENSCARG00000001966)	ENSCARG00000001944	loxl3a (ENSCARG00000027267)	kctd8 (ENSCARG00000027256)	bscl2l (ENSCARG00000027226)	nxf1a (ENSCARG00000027106)	ATG2A (ENSCARG00000026943)	trmt112 (ENSCARG00000026908)	ENSCARG00000026896
Cyprininae_a	ANCESTRAL SPECIES	368	ENSGT00390000013490	ENSGT00950000182856.a.a.b.c	ENSGT00940000158457.f	ENSGT00940000159063.e.b	ENSGT00940000153232.a.b.b.o.b	ENSGT00940000153232.a.b.b.o.a	ENSGT00390000015511.k	ENSGT00940000164838.f.a	ENSGT00950000183035.b.e.a.b	ENSGT00950000183035.b.e.b	ENSGT00390000014316.c.a.c	ENSGT00550000074940.d	ENSGT00940000157266.b.g	ENSGT00940000159024.f	ENSGT00940000167144.f	ENSGT00950000183135.B.a.b.g ##22	ENSGT00940000166497.c	ENSGT00940000159651.b	ENSGT00940000167002.f.a	ENSGT00940000164405.k.a	ENSGT00940000165256.h	ENSGT00530000063555.B.cd.a	ENSGT00390000016110.m	ENSGT00940000154394.b.a.b
Common carp reference	MODERN SPECIES	35	enpp6 (ENSCCRG00000014737)	irf2 (ENSCCRG00000014663)	CASP3 (ENSCCRG00000014661)	CASP3 (ENSCCRG00000042146)	CASP3 (ENSCCRG00000021012)	ENSCCRG00000029150	ENSCCRG00000067127	ENSCCRG00000062400	ENSCCRG00000041188	ENSCCRG00000059862	ENSCCRG00000079822	ENSCCRG00000068485	ENSCCRG00000058776	gabra4 (ENSCCRG00000013590)	ap1ar (ENSCCRG00000077556)	nanos1 (ENSCCRG00000053817) ##22	lbx2 (ENSCCRG00000077268)	pcgf1 (ENSCCRG00000023146)	fgf24 (ENSCCRG00000031907)	npm1b (ENSCCRG00000061031)	tlx2 (ENSCCRG00000031898)	kazald2 (ENSCCRG00000031291)	aup1 (ENSCCRG00000061283)	ENSCCRG00000051615	loxl3a (ENSCCRG00000001518)	kctd8 (ENSCCRG00000005357)	bscl2l (ENSCCRG00000072365)	ENSCCRG00000021943	nxf1a (ENSCCRG00000021954)	ENSCCRG00000017791	trmt112 (ENSCCRG00000028233)
Golden-line barbel	MODERN SPECIES	111	fnta (ENSSGRG00000037515)	PIGG (ENSSGRG00000037512)	lrp2bp (ENSSGRG00000037511)	snx25 (ENSSGRG00000037178)	enpp6 (ENSSGRG00000037175)	irf2 (ENSSGRG00000037126)	CASP3 (ENSSGRG00000037004)	CASP3 (ENSSGRG00000036999)	dhrs13l1 (ENSSGRG00000036998)	ENSSGRG00000036996	ENSSGRG00000036987	GUF1 (ENSSGRG00000036986)	ENSSGRG00000036985	gabra4 (ENSSGRG00000036983)	ap1ar (ENSSGRG00000036980)	nanos1 (ENSSGRG00000036979) ##22	lbx2 (ENSSGRG00000036977)	pcgf1 (ENSSGRG00000036976)	fgf24 (ENSSGRG00000036974)	npm1b (ENSSGRG00000036973)	tlx2 (ENSSGRG00000036971)	kazald2 (ENSSGRG00000036970)	tubb4b (ENSSGRG00000036966)	loxl3a (ENSSGRG00000036924)	kctd8 (ENSSGRG00000036919)	bscl2l (ENSSGRG00000036918)	ENSSGRG00000036916	nxf1a (ENSSGRG00000036915)	ATG2A (ENSSGRG00000036058)	trmt112 (ENSSGRG00000036025)	ENSSGRG00000036024
Cyprininae	ANCESTRAL SPECIES	1119																ENSGT00950000183135.B.a.b.h ##22	ENSGT00940000166497.d	ENSGT00940000159651.a
Goldfish	MODERN SPECIES	1013																nanos1 (ENSCARG00000029336) ##22	lbx2 (ENSCARG00000029344)	pcgf1 (ENSCARG00000029350)
Cyprininae_a	ANCESTRAL SPECIES	47	ENSGT00550000074935.b	ENSGT00910000144269.e	ENSGT00950000182856.a.a.b.d	ENSGT00940000158457.e	ENSGT00940000159063.e.a	ENSGT00940000153232.a.b.b.p	ENSGT00940000155599.i.a.a.l	ENSGT00390000015511.l	ENSGT00940000164838.f.b	ENSGT00950000183035.b.e.a.a	ENSGT00390000014316.c.a.d	ENSGT00550000074940.c	ENSGT00940000157266.b.h	ENSGT00940000159024.e	ENSGT00940000167144.e	ENSGT00950000183135.B.a.b.h ##22	ENSGT00940000166497.d	ENSGT00940000159651.a
Common carp reference	MODERN SPECIES	20	ENSCCRG00000069897	snx25 (ENSCCRG00000025110)	enpp6 (ENSCCRG00000021989)	irf2 (ENSCCRG00000065434)	CASP3 (ENSCCRG00000050309)	dhrs13l1 (ENSCCRG00000069961)	ENSCCRG00000035156	ENSCCRG00000081526	ENSCCRG00000035162	ENSCCRG00000037621	ENSCCRG00000033872	ENSCCRG00000012208	gabra4 (ENSCCRG00000053947)	ENSCCRG00000054188	ap1ar (ENSCCRG00000043502)	nanos1 (ENSCCRG00000073006) ##22	ENSCCRG00000066409	pcgf1 (ENSCCRG00000031047)	lbx2 (ENSCCRG00000060680)	fgf24 (ENSCCRG00000078639)	npm1b (ENSCCRG00000059542)	tlx2 (ENSCCRG00000031300)	kazald2 (ENSCCRG00000034337)	aup1 (ENSCCRG00000031284)	tubb4b (ENSCCRG00000001464)	kctd8 (ENSCCRG00000001455)	bscl2l (ENSCCRG00000034815)	ENSCCRG00000028211	nxf1a (ENSCCRG00000028207)	ENSCCRG00000077841	ENSCCRG00000030021
Golden-line barbel	MODERN SPECIES	540															ap1ar (ENSSGRG00000030757)	nanos1 (ENSSGRG00000030758) ##22	lbx2 (ENSSGRG00000030759)	pcgf1 (ENSSGRG00000030763)	zgc:172282 (ENSSGRG00000030766)
Zebrafish	MODERN SPECIES	5	lrp2bp (ENSDARG00000040478)	snx25 (ENSDARG00000099545)	enpp6 (ENSDARG00000040469)	irf2 (ENSDARG00000040465)	ENSDARG00000110894	CASP3 (ENSDARG00000055045)	dhrs13l1 (ENSDARG00000098746)	ENSDARG00000088924	ENSDARG00000040463	ENSDARG00000089009	ENSDARG00000024443	GUF1 (ENSDARG00000029088)	ENSDARG00000113737	gabra4 (ENSDARG00000013389)	ap1ar (ENSDARG00000031496)	nanos1 (ENSDARG00000109337) ##22	lbx2 (ENSDARG00000025131)	pcgf1 (ENSDARG00000001249)	fgf24 (ENSDARG00000037677)	npm1b (ENSDARG00000037675)	tlx2 (ENSDARG00000011273)	kazald2 (ENSDARG00000078518)	aup1 (ENSDARG00000092609)	tubb4b (ENSDARG00000002344)	loxl3a (ENSDARG00000076306)	kctd8 (ENSDARG00000067507)	bscl2l (ENSDARG00000025912)	ENSDARG00000053488	hdx (ENSDARG00000079382)	smu1a (ENSDARG00000002538)	ELP1 (ENSDARG00000094204)
Clupeiformes	ANCESTRAL SPECIES	23	ENSGT00390000009416	ENSGT00940000160595.b	ENSGT00940000156835.l.a.b	ENSGT00940000160449	ENSGT00940000164241	ENSGT00940000161843	ENSGT00940000162201.p	ENSGT00390000010950	ENSGT00940000164838.f	ENSGT00950000183035.b.e	ENSGT00390000014316.c.a	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651.d	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00530000063555.B	ENSGT00390000016110	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000158157.d	ENSGT00940000161041	ENSGT00950000183027.a.a.b	ENSGT00940000165461	ENSGT00940000153664.A.b.b
Atlantic herring	MODERN SPECIES	22	smtnl1 (ENSCHAG00000009564)	ENSCHAG00000009574	HS3ST1 (ENSCHAG00000009592)	ENSCHAG00000009597	ENSCHAG00000009618	nkx3-2 (ENSCHAG00000009654)	tlr1 (ENSCHAG00000009665)	ints10 (ENSCHAG00000009676)	ENSCHAG00000009922	ENSCHAG00000009935	GNPDA2 (ENSCHAG00000009965)	GUF1 (ENSCHAG00000010012)	ENSCHAG00000010381	gabra4 (ENSCHAG00000010967)	ap1ar (ENSCHAG00000011122)	nanos1 (ENSCHAG00000011138) ##22	lbx2 (ENSCHAG00000011150)	pcgf1 (ENSCHAG00000011180)	fgf24 (ENSCHAG00000011215)	npm1b (ENSCHAG00000011252)	tlx2 (ENSCHAG00000011269)	kazald2 (ENSCHAG00000011294)	aup1 (ENSCHAG00000011304)	ENSCHAG00000011334	ENSCHAG00000000195	TUBB4B (ENSCHAG00000000203)	loxl3a (ENSCHAG00000000272)	kctd8 (ENSCHAG00000000488)	RBM22 (ENSCHAG00000000539)	ENSCHAG00000000557	ENSCHAG00000000581
Denticle herring	MODERN SPECIES	9	ENSDCDG00000025051	HS3ST1 (ENSDCDG00000025054)	ENSDCDG00000025061	nkx3-2 (ENSDCDG00000025066)	ENSDCDG00000025068	ENSDCDG00000025075	tlr1 (ENSDCDG00000025094)	ints10 (ENSDCDG00000025095)	ENSDCDG00000025101	ENSDCDG00000025102	ENSDCDG00000025104	GUF1 (ENSDCDG00000025116)	ENSDCDG00000025555	gabra4 (ENSDCDG00000026706)	ap1ar (ENSDCDG00000026709)	nanos1 (ENSDCDG00000026712) ##22	lbx2 (ENSDCDG00000026714)	fgf24 (ENSDCDG00000026719)	npm1b (ENSDCDG00000026725)	tlx2 (ENSDCDG00000026731)	kazald2 (ENSDCDG00000026736)	aup1 (ENSDCDG00000026744)	tubb4b (ENSDCDG00000026759)	loxl3a (ENSDCDG00000026780)	kctd8 (ENSDCDG00000026847)	ENSDCDG00000026849	arl3l2 (ENSDCDG00000026853)	rgs14a (ENSDCDG00000026855)	arl3l2 (ENSDCDG00000021286)	ENSDCDG00000021288	ENSDCDG00000021290
Euteleosteomorpha	ANCESTRAL SPECIES	125												ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b	ENSGT00940000155719.b
Protacanthopterygii	ANCESTRAL SPECIES	58	ENSGT00940000157465	ENSGT00940000158554	ENSGT00390000006124	ENSGT00390000002781	ENSGT00940000156526.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738.n	ENSGT00940000153137.a.b	ENSGT00940000160738.m	ENSGT00940000160403	ENSGT00550000074940	ENSGT00940000157266.b	ENSGT00940000159024	ENSGT00940000167144	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002.h	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT01030000235110	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b	ENSGT00940000155719.b
Northern pike	MODERN SPECIES	3	F2RL3 (ENSELUG00000021415)	rnf130 (ENSELUG00000021452)	TBC1D9B (ENSELUG00000021561)	ENSELUG00000026382	sqstm1 (ENSELUG00000021590)	mgat4b (ENSELUG00000021707)	canx (ENSELUG00000021763)	MAML1 (ENSELUG00000021776)	LTC4S (ENSELUG00000021842)	ENSELUG00000021868	PCDH12 (ENSELUG00000021877)	GUF1 (ENSELUG00000021933)	ENSELUG00000021951	gabra4 (ENSELUG00000021980)	ap1ar (ENSELUG00000022014)	nanos1 (ENSELUG00000022032) ##22	lbx2 (ENSELUG00000022042)	pcgf1 (ENSELUG00000022082)	fgf24 (ENSELUG00000022094)	tlx2 (ENSELUG00000022140)	adad1 (ENSELUG00000022167)	ENSELUG00000001217	ENSELUG00000022187	ENSELUG00000022219	BBS12 (ENSELUG00000022231)	fgf2 (ENSELUG00000027190)	nudt6 (ENSELUG00000022259)	SPATA5 (ENSELUG00000022268)	spry1 (ENSELUG00000022279)	ANKRD50 (ENSELUG00000022324)	FAT4 (ENSELUG00000022354)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	367	ENSGT00940000156665.a.d	ENSGT00390000015484.i.n	ENSGT01050000244840.A.b.a.f	ENSGT00940000157465.o.a	ENSGT00940000158554.b	ENSGT00390000002781.l	ENSGT00940000156526.a.n	ENSGT00950000182915.a.a.a.i	ENSGT00950000183201.b.b.b.a.e	ENSGT00940000160738.m	ENSGT00940000160403.d	ENSGT00550000074940	ENSGT00940000157266.b.c	ENSGT00940000159024.c	ENSGT00940000167144.d	ENSGT00950000183135.B.a.b.i.a ##22	ENSGT00940000166497.b	ENSGT00940000159651.e	ENSGT00940000167002.g	ENSGT00940000164405.i	ENSGT00940000165256.d	ENSGT00940000156842	ENSGT00990000207836.A	ENSGT01030000235110.b	ENSGT00940000162309.d	ENSGT00390000008984	ENSGT00940000167088.h	ENSGT00390000008458.l	ENSGT00950000183055.b.a.g
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00940000156038.a.a.d.b.b.a.b	ENSGT00390000015484.i.n	ENSGT01050000244840.A.b.a.f	ENSGT00940000157465.o.a	ENSGT00940000158554.b	ENSGT00390000002781.l	ENSGT00940000156526.a.n	ENSGT00950000182915.a.a.a.i	ENSGT00950000183201.b.b.b.a.e	ENSGT00940000160738.m	ENSGT00940000160403.d	ENSGT00550000074940	ENSGT00940000157266.b.c	ENSGT00940000159024.c	ENSGT00940000167144.d	ENSGT00950000183135.B.a.b.i.a ##22	ENSGT00940000166497.b	ENSGT00940000159651.e	ENSGT00940000167002.g	ENSGT00940000164405.i	ENSGT00940000165256.d	ENSGT00940000156842	ENSGT00990000207836.A	ENSGT01030000235110.b	ENSGT00940000162309.d	ENSGT00390000008984	ENSGT00940000167088.h	ENSGT00390000008458.l	ENSGT00950000183055.b.a.g	ENSGT00940000155116.b.z	ENSGT00940000155719.b.l
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000156038.a.a.d.b.b.a.b	ENSGT00390000015484.i.n	ENSGT01050000244840.A.b.a.f	ENSGT00940000157465.o.a	ENSGT00940000158554.b	ENSGT00390000002781.l	ENSGT00940000156526.a.n	ENSGT00950000182915.a.a.a.i	ENSGT00950000183201.b.b.b.a.e	ENSGT00940000176194	ENSGT00940000160403.d	ENSGT00550000074940	ENSGT00940000157266.b.c	ENSGT00940000159024.c	ENSGT00940000167144.d	ENSGT00950000183135.B.a.b.i.a ##22	ENSGT01100000265271	ENSGT00940000166497.b	ENSGT00940000159651.e	ENSGT00940000167002.g	ENSGT00940000164405.i	ENSGT00940000165256.d	ENSGT00940000156842	ENSGT00990000207836.A	ENSGT01030000235110.b	ENSGT00940000162309.d	ENSGT00390000008984	ENSGT00940000167088.h	ENSGT00390000008458.l	ENSGT00950000183055.b.a.g	ENSGT00940000155116.b.z
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000011205	ENSOMYG00000011201	RNF130 (ENSOMYG00000010945)	TBC1D9B (ENSOMYG00000008326)	sqstm1 (ENSOMYG00000006893)	mgat4b (ENSOMYG00000006797)	canx (ENSOMYG00000006488)	ENSOMYG00000006057	ENSOMYG00000006037	ENSOMYG00000006023	ENSOMYG00000005528	ENSOMYG00000004777	ENSOMYG00000049825	gabra4 (ENSOMYG00000004656)	ap1ar (ENSOMYG00000004627)	nanos1 (ENSOMYG00000004577) ##22	ENSOMYG00000052017	lbx2 (ENSOMYG00000004564)	pcgf1 (ENSOMYG00000004531)	fgf24 (ENSOMYG00000004413)	npm1b (ENSOMYG00000044750)	tlx2 (ENSOMYG00000004195)	adad1 (ENSOMYG00000004151)	ENSOMYG00000004124	ENSOMYG00000076994	ENSOMYG00000004084	cetn4 (ENSOMYG00000004004)	BBS12 (ENSOMYG00000003981)	fgf2 (ENSOMYG00000003904)	NUDT6 (ENSOMYG00000064835)	spry1 (ENSOMYG00000003882)
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000156038.a.a.d.b.b.a.b	ENSGT00390000015484.i.n	ENSGT01050000244840.A.b.a.f	ENSGT00940000157465.o.a	ENSGT00940000158554.b	ENSGT00390000002781.l	ENSGT00940000156526.a.n	ENSGT00950000182915.a.a.a.i	ENSGT00950000183201.b.b.b.a.e	ENSGT00940000176194	ENSGT00940000160403.d	ENSGT00550000074940	ENSGT00940000157266.b.c	ENSGT00940000159024.c	ENSGT00940000167144.d	ENSGT00950000183135.B.a.b.i.a ##22	ENSGT01100000265271	ENSGT00940000166497.b	ENSGT00940000159651.e	ENSGT00940000167002.g	ENSGT00940000164405.i	ENSGT00940000165256.d	ENSGT00940000156842	ENSGT00990000207836.A	ENSGT01030000235110.b	ENSGT00940000162309.d	ENSGT00390000008984	ENSGT00940000167088.h	ENSGT00390000008458.l	ENSGT00950000183055.b.a.g	ENSGT00940000155116.b.z
Coho salmon	MODERN SPECIES	10	ENSOKIG00005042152	ENSOKIG00005042073	F2RL3 (ENSOKIG00005042060)	rnf130 (ENSOKIG00005041817)	TBC1D9B (ENSOKIG00005038477)	sqstm1 (ENSOKIG00005038304)	mgat4b (ENSOKIG00005036327)	canx (ENSOKIG00005036172)	MAML1 (ENSOKIG00005036142)	ENSOKIG00005036115	PCDH12 (ENSOKIG00005036097)	GUF1 (ENSOKIG00005035293)	GABRA2 (ENSOKIG00005034571)	gabra4 (ENSOKIG00005034531)	ap1ar (ENSOKIG00005034520)	nanos1 (ENSOKIG00005034503) ##22	ENSOKIG00005034487	lbx2 (ENSOKIG00005034476)	pcgf1 (ENSOKIG00005034462)	npm1b (ENSOKIG00005034412)	tlx2 (ENSOKIG00005034385)	adad1 (ENSOKIG00005034341)	ENSOKIG00005034329	ENSOKIG00005034283	ENSOKIG00005034240	BBS12 (ENSOKIG00005034230)	ENSOKIG00005034216	ENSOKIG00005034201	spry1 (ENSOKIG00005034195)	ENSOKIG00005034188	ANKRD50 (ENSOKIG00005034174)
Chinook salmon	MODERN SPECIES	13	ENSOTSG00005045649	F2RL3 (ENSOTSG00005045648)	rnf130 (ENSOTSG00005045647)	TBC1D9B (ENSOTSG00005045553)	sqstm1 (ENSOTSG00005045547)	mgat4b (ENSOTSG00005045367)	canx (ENSOTSG00005045278)	MAML1 (ENSOTSG00005045272)	ENSOTSG00005045271	PCDH12 (ENSOTSG00005045270)	GUF1 (ENSOTSG00005045033)	GABRA2 (ENSOTSG00005044770)	gabra4 (ENSOTSG00005044768)	ap1ar (ENSOTSG00005044767)	ENSOTSG00005044765	nanos1 (ENSOTSG00005044764) ##22	lbx2 (ENSOTSG00005044763)	pcgf1 (ENSOTSG00005044762)	fgf24 (ENSOTSG00005044761)	npm1b (ENSOTSG00005044760)	tlx2 (ENSOTSG00005044759)	adad1 (ENSOTSG00005044757)	ENSOTSG00005044756	spry1 (ENSOTSG00005044755)	ANKRD50 (ENSOTSG00005044754)	FAT4 (ENSOTSG00005044753)	zgc:92045 (ENSOTSG00005044752)	SRP72 (ENSOTSG00005044746)	arl9 (ENSOTSG00005044745)	hopx (ENSOTSG00005044744)	ENSOTSG00005042898
Salmo	ANCESTRAL SPECIES	24	ENSGT00940000156038.a.a.d.b.b.a.b	ENSGT00390000015484.i.n	ENSGT01050000244840.A.b.a.f	ENSGT00940000157465.o.a	ENSGT00940000158554.b	ENSGT00390000002781.l	ENSGT00940000156526.a.n	ENSGT00950000182915.a.a.a.i	ENSGT00950000183201.b.b.b.a.e	ENSGT00940000160738.m	ENSGT00940000160403.d	ENSGT00550000074940	ENSGT00940000157266.b.c	ENSGT00940000159024.c	ENSGT00940000167144.d	ENSGT00950000183135.B.a.b.i.a ##22	ENSGT00940000166497.b	ENSGT00940000159651.e	ENSGT00940000167002.g	ENSGT00940000164405.i	ENSGT00940000165256.d	ENSGT00940000156842	ENSGT00990000207836.A	ENSGT01030000235110.b	ENSGT00940000162309.d	ENSGT00390000008984.m	ENSGT00940000167088.h	ENSGT00390000008458.l	ENSGT00950000183055.b.a.g	ENSGT00940000155116.b.z	ENSGT00940000155719.b.l
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000076003	ENSSSAG00000076013	rnf130 (ENSSSAG00000076016)	TBC1D9B (ENSSSAG00000076038)	sqstm1 (ENSSSAG00000076115)	mgat4b (ENSSSAG00000076123)	canx (ENSSSAG00000076158)	ENSSSAG00000076182	LTC4S (ENSSSAG00000089536)	ENSSSAG00000076189	guf1 (ENSSSAG00000076202)	ENSSSAG00000076466	ENSSSAG00000087846	gabra4 (ENSSSAG00000076474)	ap1ar (ENSSSAG00000076488)	nanos1 (ENSSSAG00000108324) ##22	lbx2 (ENSSSAG00000116761)	pcgf1 (ENSSSAG00000076508)	fgf24 (ENSSSAG00000101433)	npm1b (ENSSSAG00000002978)	tlx2 (ENSSSAG00000118712)	adad1 (ENSSSAG00000003012)	ENSSSAG00000003029	ENSSSAG00000003037	ENSSSAG00000003047	BBS12 (ENSSSAG00000003060)	fgf2 (ENSSSAG00000119911)	NUDT6 (ENSSSAG00000109873)	spy1 (ENSSSAG00000003078)	ANKRD50 (ENSSSAG00000003084)	FAT4 (ENSSSAG00000003093)
River trout	MODERN SPECIES	22	ENSSTUG00000034653	F2RL3 (ENSSTUG00000034679)	rnf130 (ENSSTUG00000034687)	TBC1D9B (ENSSTUG00000034913)	ENSSTUG00000039125	sqstm1 (ENSSTUG00000039128)	mgat4b (ENSSTUG00000039183)	canx (ENSSTUG00000040523)	ENSSTUG00000040574	LTC4S (ENSSTUG00000040592)	PCDH12 (ENSSTUG00000040613)	GUF1 (ENSSTUG00000040706)	GABRA2 (ENSSTUG00000042105)	gabra4 (ENSSTUG00000042200)	ap1ar (ENSSTUG00000042269)	nanos1 (ENSSTUG00000042291) ##22	lbx2 (ENSSTUG00000042316)	pcgf1 (ENSSTUG00000042341)	fgf24 (ENSSTUG00000042397)	npm1b (ENSSTUG00000042438)	tlx2 (ENSSTUG00000042480)	adad1 (ENSSTUG00000042504)	ENSSTUG00000042528	ENSSTUG00000042553	ENSSTUG00000000064	BBS12 (ENSSTUG00000000067)	fgf2 (ENSSTUG00000000433)	ENSSTUG00000000435	spry1 (ENSSTUG00000000449)	ANKRD50 (ENSSTUG00000000453)	FAT4 (ENSSTUG00000000459)
Huchen	MODERN SPECIES	513						mgat4b (ENSHHUG00000020073)	canx (ENSHHUG00000020209)	MAML1 (ENSHHUG00000020263)	ENSHHUG00000020265	PCDH12 (ENSHHUG00000020269)	GUF1 (ENSHHUG00000020273)	GABRA2 (ENSHHUG00000020283)	gabra4 (ENSHHUG00000020456)	ap1ar (ENSHHUG00000020462)	ENSHHUG00000020472	nanos1 (ENSHHUG00000020477) ##22	lbx2 (ENSHHUG00000020487)	pcgf1 (ENSHHUG00000020490)	fgf24 (ENSHHUG00000020497)	npm1b (ENSHHUG00000020511)	tlx2 (ENSHHUG00000020525)
Salmoninae	ANCESTRAL SPECIES	34	ENSGT00390000015484.i.m	ENSGT01050000244840.A.b.a.e	ENSGT00940000157465.o.b	ENSGT00940000158554.a	ENSGT00390000006124	ENSGT00390000002781.k	ENSGT00940000156526.a.m	ENSGT00950000182915.a.a.a.j	ENSGT00950000183201.b.b.b.a.f	ENSGT00940000160738.n	ENSGT00940000153137.a.b	ENSGT00940000160403.c	ENSGT00940000157266.b.d	ENSGT00940000159024.d	ENSGT00940000167144.c	ENSGT00950000183135.B.a.b.i.b ##22	ENSGT00940000166497.a	ENSGT00940000159651.f	ENSGT00940000167002.h	ENSGT00940000164405.j	ENSGT00940000165256.c	ENSGT00990000207836.B	ENSGT01030000235110.a	ENSGT00940000162309.c	ENSGT00940000167088.g	ENSGT00390000008458.k	ENSGT00940000157323	ENSGT00950000183055.b.a.h	ENSGT00940000155116.b.y	ENSGT00940000155719.b.k	ENSGT00390000006503.b.i.a
Huchen	MODERN SPECIES		F2RL3 (ENSHHUG00000001265)	rnf130 (ENSHHUG00000001258)	TBC1D9B (ENSHHUG00000000838)	ENSHHUG00000000831	sqstm1 (ENSHHUG00000000816)	mgat4b (ENSHHUG00000000790)	canx (ENSHHUG00000000657)	MAML1 (ENSHHUG00000000656)	LTC4S (ENSHHUG00000000654)	ENSHHUG00000000648	PCDH12 (ENSHHUG00000000644)	ENSHHUG00000000640	GABRA2 (ENSHHUG00000000583)	gabra4 (ENSHHUG00000000544)	ap1ar (ENSHHUG00000000527)	nanos1 (ENSHHUG00000000503) ##22	lbx2 (ENSHHUG00000000497)	pcgf1 (ENSHHUG00000000471)	fgf24 (ENSHHUG00000000417)	npm1b (ENSHHUG00000000404)	tlx2 (ENSHHUG00000000354)	ENSHHUG00000000318	ENSHHUG00000000301	ENSHHUG00000000095	fgf2 (ENSHHUG00000000080)	nudt6 (ENSHHUG00000000053)	SPATA5 (ENSHHUG00000000006)	spry1 (ENSHHUG00000000005)	ANKRD50 (ENSHHUG00000000004)	ENSHHUG00000000003	FAT4 (ENSHHUG00000000002)
Salmoninae_a	ANCESTRAL SPECIES	40	ENSGT00390000015484.i.m	ENSGT01050000244840.A.b.a.e	ENSGT00940000157465.o.b	ENSGT00940000158554.a	ENSGT00390000006124	ENSGT00390000002781.k	ENSGT00940000156526.a.m	ENSGT00950000182915.a.a.a.j	ENSGT00950000183201.b.b.b.a.f	ENSGT00940000160738.n	ENSGT00940000153137.a.b	ENSGT00940000160403.c	ENSGT00940000157266.b.d	ENSGT00940000159024.d	ENSGT00940000167144.c	ENSGT00950000183135.B.a.b.i.b ##22	ENSGT00940000166497.a	ENSGT00940000159651.f	ENSGT00940000167002.h	ENSGT00940000164405.j	ENSGT00940000165256.c	ENSGT00990000207836.B	ENSGT01030000235110.a	ENSGT00940000162309.c	ENSGT00940000167088.g	ENSGT00390000008458.k	ENSGT00940000157323	ENSGT00950000183055.b.a.h	ENSGT00940000155116.b.y	ENSGT00940000155719.b.k	ENSGT00390000006503.b.i.a
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.b.i.b ##22
Rainbow trout	MODERN SPECIES	23	ENSOMYG00000052242	rnf130 (ENSOMYG00000045010)	TBC1D9B (ENSOMYG00000044940)	ENSOMYG00000048178	sqstm1 (ENSOMYG00000044911)	mgat4b (ENSOMYG00000044895)	canx (ENSOMYG00000044873)	ENSOMYG00000071499	LTC4S (ENSOMYG00000051938)	ENSOMYG00000044862	ENSOMYG00000044858	ENSOMYG00000070618	ENSOMYG00000044811	gabra4 (ENSOMYG00000044782)	ap1ar (ENSOMYG00000044772)	nanos1 (ENSOMYG00000044766) ##22	lbx2 (ENSOMYG00000044763)	pcgf1 (ENSOMYG00000044759)	npm1b (ENSOMYG00000072502)	tlx2 (ENSOMYG00000044744)	ENSOMYG00000044739	il2 (ENSOMYG00000044734)	IL21B (ENSOMYG00000044729)	ENSOMYG00000056818	ENSOMYG00000044725	fgf2 (ENSOMYG00000044720)	NUDT6 (ENSOMYG00000044716)	ENSOMYG00000066034	SPATA5 (ENSOMYG00000044685)	spry1 (ENSOMYG00000044667)	ANKRD50 (ENSOMYG00000044664)
Salmo	ANCESTRAL SPECIES	43	ENSGT00390000015484.i.m	ENSGT01050000244840.A.b.a.e	ENSGT00940000157465.o.b	ENSGT00940000158554.a	ENSGT00390000006124	ENSGT00390000002781.k	ENSGT00940000156526.a.m	ENSGT00950000182915.a.a.a.j	ENSGT00950000183201.b.b.b.a.f	ENSGT00940000160738.n	ENSGT00940000153137.a.b	ENSGT00940000160403.c	ENSGT00940000157266.b.d	ENSGT00940000159024.d	ENSGT00940000167144.c	ENSGT00950000183135.B.a.b.i.b ##22	ENSGT00940000166497.a	ENSGT00940000159651.f	ENSGT00940000167002.h	ENSGT00940000164405.j	ENSGT00940000165256.c	ENSGT00990000207836.B	ENSGT01030000235110.a	ENSGT00940000162309.c	ENSGT00390000008984.n	ENSGT00940000167088.g	ENSGT00390000008458.k	ENSGT00940000157323	ENSGT00950000183055.b.a.h	ENSGT00940000155116.b.y	ENSGT00940000155719.b.k
River trout	MODERN SPECIES	4	ENSSTUG00000026447	F2RL3 (ENSSTUG00000026525)	rnf130 (ENSSTUG00000026535)	TBC1D9B (ENSSTUG00000026593)	ENSSTUG00000027088	sqstm1 (ENSSTUG00000027093)	mgat4b (ENSSTUG00000027122)	canx (ENSSTUG00000027494)	MAML1 (ENSSTUG00000027510)	LTC4S (ENSSTUG00000027520)	ENSSTUG00000027528	PCDH12 (ENSSTUG00000027533)	GABRA2 (ENSSTUG00000027559)	gabra4 (ENSSTUG00000029107)	ap1ar (ENSSTUG00000029120)	nanos1 (ENSSTUG00000029148) ##22	lbx2 (ENSSTUG00000029158)	pcgf1 (ENSSTUG00000029166)	fgf24 (ENSSTUG00000029181)	npm1b (ENSSTUG00000029216)	tlx2 (ENSSTUG00000029226)	ENSSTUG00000029240	il21 (ENSSTUG00000029260)	ENSSTUG00000029298	ENSSTUG00000029337	fgf2 (ENSSTUG00000029353)	nudt6 (ENSSTUG00000029372)	SPATA5 (ENSSTUG00000029398)	spry1 (ENSSTUG00000030212)	ANKRD50 (ENSSTUG00000030218)	FAT4 (ENSSTUG00000010989)
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000073159	ENSSSAG00000115953	ENSSSAG00000104182	rnf130 (ENSSSAG00000073187)	sqstm1 (ENSSSAG00000073443)	TBC1D9B (ENSSSAG00000073271)	mgat4b (ENSSSAG00000118203)	canx (ENSSSAG00000073461)	ENSSSAG00000107190	LTC4S (ENSSSAG00000100228)	ENSSSAG00000106678	ENSSSAG00000073511	ENSSSAG00000073523	gabra4 (ENSSSAG00000107159)	ap1ar (ENSSSAG00000073576)	nanos1 (ENSSSAG00000073581) ##22	lbx2 (ENSSSAG00000117592)	pcgf1 (ENSSSAG00000073584)	fgf24 (ENSSSAG00000073589)	npm1b (ENSSSAG00000087613)	tlx2 (ENSSSAG00000073594)	ENSSSAG00000118910	ENSSSAG00000073598	ENSSSAG00000073599	ENSSSAG00000073600	ENSSSAG00000073602	fgf2 (ENSSSAG00000114007)	nudt6 (ENSSSAG00000073609)	SPATA5 (ENSSSAG00000073614)	SPY1 (ENSSSAG00000073660)	ankrd50 (ENSSSAG00000073664)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.b.j ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.b.j ##22
Oncorhynchus	ANCESTRAL SPECIES	39	ENSGT00390000015484.i.m	ENSGT01050000244840.A.b.a.e	ENSGT00940000157465.o.b	ENSGT00940000158554.a	ENSGT00390000006124	ENSGT00390000002781.k	ENSGT00940000156526.a.m	ENSGT00950000182915.a.a.a.j	ENSGT00950000183201.b.b.b.a.f	ENSGT00940000160738.n	ENSGT00940000153137.a.b	ENSGT00940000160403.c	ENSGT00940000157266.b.d	ENSGT00940000159024.d	ENSGT00940000167144.c	ENSGT00950000183135.B.a.b.j ##22	ENSGT00940000166497.a	ENSGT00940000159651.f	ENSGT00940000167002.h	ENSGT00940000164405.j	ENSGT00940000165256.c	ENSGT00990000207836.B	ENSGT01030000235110.a	ENSGT00940000162309.c	ENSGT00940000167088.g	ENSGT00390000008458.k	ENSGT00940000157323	ENSGT00950000183055.b.a.h	ENSGT00940000155116.b.y	ENSGT00940000155719.b.k	ENSGT00390000006503.b.j
Oncorhynchus_a	ANCESTRAL SPECIES	40	ENSGT00390000015484.i.m	ENSGT01050000244840.A.b.a.e	ENSGT00940000157465.o.b	ENSGT00940000158554.a	ENSGT00390000006124	ENSGT00390000002781.k	ENSGT00940000156526.a.m	ENSGT00950000182915.a.a.a.j	ENSGT00950000183201.b.b.b.a.f	ENSGT00940000160738.n	ENSGT00940000153137.a.b	ENSGT00940000160403.c	ENSGT00940000157266.b.d	ENSGT00940000159024.d	ENSGT00940000167144.c	ENSGT00950000183135.B.a.b.j ##22	ENSGT00940000166497.a	ENSGT00940000159651.f	ENSGT00940000167002.h	ENSGT00940000164405.j	ENSGT00940000165256.c	ENSGT00990000207836.B	ENSGT01030000235110.a	ENSGT00940000162309.c	ENSGT00940000167088.g	ENSGT00390000008458.k	ENSGT00940000157323	ENSGT00950000183055.b.a.h	ENSGT00940000155116.b.y	ENSGT00940000155719.b.k	ENSGT00390000006503.b.j
Coho salmon	MODERN SPECIES	6	ENSOKIG00005005707	F2RL3 (ENSOKIG00005005704)	rnf130 (ENSOKIG00005005604)	TBC1D9B (ENSOKIG00005005449)	mrnip (ENSOKIG00005005431)	sqstm1 (ENSOKIG00005005419)	mgat4b (ENSOKIG00005005139)	MAML1 (ENSOKIG00005004965)	ENSOKIG00005004900	ENSOKIG00005004877	PCDH12 (ENSOKIG00005004873)	GABRA2 (ENSOKIG00005004415)	gabra4 (ENSOKIG00005004238)	ENSOKIG00005030585	ap1ar (ENSOKIG00005030570)	nanos1 (ENSOKIG00005030552) ##22	lbx2 (ENSOKIG00005030531)	pcgf1 (ENSOKIG00005030402)	fgf24 (ENSOKIG00005030326)	npm1b (ENSOKIG00005030275)	tlx2 (ENSOKIG00005030237)	ENSOKIG00005030216	ENSOKIG00005030174	ENSOKIG00005030029	fgf2 (ENSOKIG00005030000)	nudt6 (ENSOKIG00005029992)	SPATA5 (ENSOKIG00005029232)	spry1 (ENSOKIG00005029164)	ANKRD50 (ENSOKIG00005029153)	FAT4 (ENSOKIG00005029146)	LEPROTL1 (ENSOKIG00005029105)
Chinook salmon	MODERN SPECIES	32	lect2.1 (ENSOTSG00005044586)	F2RL3 (ENSOTSG00005044582)	rnf130 (ENSOTSG00005044448)	TBC1D9B (ENSOTSG00005044202)	mrnip (ENSOTSG00005044200)	sqstm1 (ENSOTSG00005044199)	mgat4b (ENSOTSG00005044114)	canx (ENSOTSG00005044108)	MAML1 (ENSOTSG00005044106)	LTC4S (ENSOTSG00005044104)	ENSOTSG00005044103	PCDH12 (ENSOTSG00005044101)	GABRA2 (ENSOTSG00005043617)	gabra4 (ENSOTSG00005043614)	ap1ar (ENSOTSG00005043613)	nanos1 (ENSOTSG00005043611) ##22	lbx2 (ENSOTSG00005043610)	pcgf1 (ENSOTSG00005043607)	fgf24 (ENSOTSG00005043602)	npm1b (ENSOTSG00005043601)	tlx2 (ENSOTSG00005043600)	ENSOTSG00005043599	ENSOTSG00005043598	ENSOTSG00005043567	fgf2 (ENSOTSG00005043565)	nudt6 (ENSOTSG00005043563)	SPATA5 (ENSOTSG00005043556)	spry1 (ENSOTSG00005043555)	ANKRD50 (ENSOTSG00005043554)	FAT4 (ENSOTSG00005043553)	LEPROTL1 (ENSOTSG00005043548)
Acanthomorphata	ANCESTRAL SPECIES	73	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000016264	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000016264	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005024068	tmem216 (ENSMMDG00005024073)	ENSMMDG00005024077	tmed9 (ENSMMDG00005024078)	b4galt7 (ENSMMDG00005024082)	emx3 (ENSMMDG00005024085) ##18	CCDC69 (ENSMMDG00005024088)	gm2a (ENSMMDG00005024089)	bbs7 (ENSMMDG00005024098)	tmem33 (ENSMMDG00005024118)	phox2bb (ENSMMDG00005024119)	ENSMMDG00005024123	ENSMMDG00005024124	ENSMMDG00005024125	ctsz (ENSMMDG00005024127)	nanos1 (ENSMMDG00005024128) ##22	ENSMMDG00005004225	lbx2 (ENSMMDG00005004230)	pcgf1 (ENSMMDG00005004243)	npm1b (ENSMMDG00005004265)	tlx2 (ENSMMDG00005004287)	adad1 (ENSMMDG00005004299)	ENSMMDG00005004317	ENSMMDG00005004325	BBS12 (ENSMMDG00005004333)	fgf2 (ENSMMDG00005004338)	nudt6 (ENSMMDG00005004349)	SPATA5 (ENSMMDG00005004447)	spry1 (ENSMMDG00005006122)	ANKRD50 (ENSMMDG00005006123)	ENSMMDG00005006125
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00390000016264	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323
Tiger tail seahorse	MODERN SPECIES	353	fstl5 (ENSHCOG00000009492)	qdpra (ENSHCOG00000009525)	ldb2a (ENSHCOG00000009547)	TAPT1 (ENSHCOG00000009580)	prom1a (ENSHCOG00000009634)	ENSHCOG00000009642	anxa5a (ENSHCOG00000009931)	ccna2 (ENSHCOG00000009956)	bbs7 (ENSHCOG00000010044)	tmem33 (ENSHCOG00000010094)	phox2bb (ENSHCOG00000010125)	LIMCH1 (ENSHCOG00000010161)	ENSHCOG00000010185	ctsz (ENSHCOG00000010305)	ENSHCOG00000010320	nanos1 (ENSHCOG00000010326) ##22	dnaaf1 (ENSHCOG00000010341)	ENSHCOG00000010354
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00390000016264	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00390000016264.a.b	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00940000154672	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000016264.a.b	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323.h	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Fugu	MODERN SPECIES	5	RAPGEF2 (ENSTRUG00000004171)	fstl5 (ENSTRUG00000005344)	qdpra (ENSTRUG00000005706)	ldb2a (ENSTRUG00000019730)	TAPT1 (ENSTRUG00000006181)	prom1a (ENSTRUG00000006388)	ENSTRUG00000006847	anxa5a (ENSTRUG00000006853)	ccna2 (ENSTRUG00000007066)	bbs7 (ENSTRUG00000007380)	tmem33 (ENSTRUG00000007428)	phox2bb (ENSTRUG00000007442)	LIMCH1 (ENSTRUG00000007537)	ENSTRUG00000007731	ENSTRUG00000030013	nanos1 (ENSTRUG00000021804) ##22	lbx2 (ENSTRUG00000025486)	pcgf1 (ENSTRUG00000007881)	fgf24 (ENSTRUG00000008042)	npm1b (ENSTRUG00000008105)	tlx2 (ENSTRUG00000008354)	adad1 (ENSTRUG00000008514)	ENSTRUG00000029258	ENSTRUG00000031475	il-21 (ENSTRUG00000008731)	cetn (ENSTRUG00000008744)	fgf2 (ENSTRUG00000029971)	gfg (ENSTRUG00000024678)	ENSTRUG00000030632	SPATA5 (ENSTRUG00000008995)	adad1 (ENSTRUG00000030359)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Ballan wrasse	MODERN SPECIES	468									ccna2 (ENSLBEG00000016252)	bbs7 (ENSLBEG00000016317)	tmem33 (ENSLBEG00000016411)	phox2bb (ENSLBEG00000016441)	ENSLBEG00000016463	ENSLBEG00000016482	ctsz (ENSLBEG00000016521)	nanos1 (ENSLBEG00000016559) ##22
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Gilthead seabream	MODERN SPECIES	9	ldb2a (ENSSAUG00010014013)	TAPT1 (ENSSAUG00010014049)	prom1a (ENSSAUG00010014320)	fgfbp2a (ENSSAUG00010014479)	FGFBP1 (ENSSAUG00010014480)	anxa5a (ENSSAUG00010014484)	ccna2 (ENSSAUG00010014495)	bbs7 (ENSSAUG00010014501)	tmem33 (ENSSAUG00010014552)	ENSSAUG00010014570	phox2bb (ENSSAUG00010014573)	LIMCH1 (ENSSAUG00010014577)	ENSSAUG00010014595	ENSSAUG00010014598	ctsz (ENSSAUG00010014606)	nanos1 (ENSSAUG00010014612) ##22	lbx2 (ENSSAUG00010014615)	pcgf1 (ENSSAUG00010014622)	fgf24 (ENSSAUG00010014633)	tlx2 (ENSSAUG00010014641)	ENSSAUG00010014642	adad1 (ENSSAUG00010014643)	ENSSAUG00010014644	ENSSAUG00010014645
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	39	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
European seabass	MODERN SPECIES	12	RAPGEF2 (ENSDLAG00005015387)	FSTL5 (ENSDLAG00005014297)	qdpra (ENSDLAG00005014238)	ldb2a (ENSDLAG00005014165)	TAPT1 (ENSDLAG00005013767)	prom1a (ENSDLAG00005011795)	fgfbp2a (ENSDLAG00005011747)	FGFBP1 (ENSDLAG00005027041)	anxa5a (ENSDLAG00005011468)	CCNA2 (ENSDLAG00005011439)	BBS7 (ENSDLAG00005011350)	ENSDLAG00005011311	ENSDLAG00005011011	ENSDLAG00005011029	ENSDLAG00005011006	nanos1 (ENSDLAG00005010999) ##22	lbx2 (ENSDLAG00005032899)	pcgf1 (ENSDLAG00005010940)	fgf24 (ENSDLAG00005010916)	npm1b (ENSDLAG00005010908)	tlx2 (ENSDLAG00005010893)	ENSDLAG00005010881	ENSDLAG00005010875	adad1 (ENSDLAG00005028046)	ENSDLAG00005028307	ENSDLAG00005031973	NUDT6 (ENSDLAG00005031083)	SPATA5 (ENSDLAG00005010165)	spry1 (ENSDLAG00005030052)	ANKRD50 (ENSDLAG00005010130)	ENSDLAG00005010099
Large yellow croaker	MODERN SPECIES		ENSLCRG00005000076	ENSLCRG00005000072	ENSLCRG00005000070	ENSLCRG00005000066	ENSLCRG00005016460	SPOP (ENSLCRG00005016426)	ENSLCRG00005016422	ndufa4b (ENSLCRG00005016421)	ENSLCRG00005016416	rundc3ab (ENSLCRG00005016409)	pth3r (ENSLCRG00005016399)	TACO1 (ENSLCRG00005016394)	KCNH2 (ENSLCRG00005016392)	dcaf7 (ENSLCRG00005016386)	ctsz (ENSLCRG00005016384)	nanos1 (ENSLCRG00005016382) ##22	lbx2 (ENSLCRG00005016380)	pcgf1 (ENSLCRG00005016372)	fgf24 (ENSLCRG00005016366)	npm1b (ENSLCRG00005016362)	tlx2 (ENSLCRG00005016361)	adad1 (ENSLCRG00005016359)	ENSLCRG00005016358	ENSLCRG00005016356	ENSLCRG00005016355	BBS12 (ENSLCRG00005016351)	fgf2 (ENSLCRG00005016350)	nudt6 (ENSLCRG00005016349)	SPATA5 (ENSLCRG00005016313)	spry1 (ENSLCRG00005016311)	ENSLCRG00005016309
Perciformes	ANCESTRAL SPECIES	13	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000156842	ENSGT00940000177064	ENSGT00990000209328	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00940000155116.b	ENSGT00940000155719.b
Lumpfish	MODERN SPECIES	1	fstl5 (ENSCLMG00005012162)	qdpra (ENSCLMG00005012191)	ldb2a (ENSCLMG00005012196)	TAPT1 (ENSCLMG00005012201)	prom1a (ENSCLMG00005012610)	fgfbp2a (ENSCLMG00005012611)	FGFBP1 (ENSCLMG00005012612)	anxa5a (ENSCLMG00005012615)	ccna2 (ENSCLMG00005012694)	bbs7 (ENSCLMG00005012695)	tmem33 (ENSCLMG00005012707)	phox2bb (ENSCLMG00005012708)	ENSCLMG00005012709	ENSCLMG00005012710	ENSCLMG00005012712	nanos1 (ENSCLMG00005012714) ##22	ENSCLMG00005012716	lbx2 (ENSCLMG00005012718)	pcgf1 (ENSCLMG00005012719)	fgf24 (ENSCLMG00005012721)	adad1 (ENSCLMG00005012723)	ENSCLMG00005012725	ENSCLMG00005012727	ENSCLMG00005012729	ENSCLMG00005012733	ENSCLMG00005012734	ENSCLMG00005012735	fgf2 (ENSCLMG00005012737)	nudt6 (ENSCLMG00005012738)	SPATA5 (ENSCLMG00005012739)	ankrd50 (ENSCLMG00005012741)
Stickleback	MODERN SPECIES	3	qdpra (ENSGACG00000016641)	ldb2a (ENSGACG00000016642)	TAPT1 (ENSGACG00000016645)	prom1a (ENSGACG00000016649)	ENSGACG00000016652	ENSGACG00000016656	anxa5a (ENSGACG00000016658)	ENSGACG00000016664	ccna2 (ENSGACG00000016665)	bbs7 (ENSGACG00000016673)	tmem33 (ENSGACG00000016676)	phox2bb (ENSGACG00000016683)	LIMCH1 (ENSGACG00000016686)	ENSGACG00000016689	ENSGACG00000016691	nanos1 (ENSGACG00000016692) ##22	lbx2 (ENSGACG00000016693)	pcgf1 (ENSGACG00000016695)	fgf24 (ENSGACG00000016697)	npm1b (ENSGACG00000016706)	ENSGACG00000016709	adad1 (ENSGACG00000016712)	ENSGACG00000016715	BBS12 (ENSGACG00000016720)	fgf2 (ENSGACG00000016721)	nudt6 (ENSGACG00000016725)	SPATA5 (ENSGACG00000016731)	ANKRD50 (ENSGACG00000016734)	FAT4 (ENSGACG00000016736)	ENSGACG00000016744	zgc:92045 (ENSGACG00000016745)
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Pike perch	MODERN SPECIES	32	ldb2a (ENSSLUG00000004503)	TAPT1 (ENSSLUG00000004584)	prom1a (ENSSLUG00000005400)	fgfbp2a (ENSSLUG00000006531)	ENSSLUG00000006536	anxa5a (ENSSLUG00000006554)	ccna2 (ENSSLUG00000006726)	bbs7 (ENSSLUG00000006751)	tmem33 (ENSSLUG00000006805)	phox2bb (ENSSLUG00000006850)	ENSSLUG00000006860	ENSSLUG00000006866	ENSSLUG00000006873	ENSSLUG00000006880	CTSZ (ENSSLUG00000006890)	nanos1 (ENSSLUG00000006984) ##22	ENSSLUG00000006991	lbx2 (ENSSLUG00000006997)	pcgf1 (ENSSLUG00000007015)	fgf24 (ENSSLUG00000007054)	npm1b (ENSSLUG00000007071)	tlx2 (ENSSLUG00000007085)	adad1 (ENSSLUG00000007116)	ENSSLUG00000007278	ENSSLUG00000007294	ENSSLUG00000007301	ENSSLUG00000007323	BBS12 (ENSSLUG00000007336)	fgf2 (ENSSLUG00000007342)	nudt6 (ENSSLUG00000007345)	SPATA5 (ENSSLUG00000007385)
Channel bull blenny	MODERN SPECIES	1	RAPGEF2 (ENSCGOG00000001162)	fstl5 (ENSCGOG00000001019)	qdpra (ENSCGOG00000000998)	ldb2a (ENSCGOG00000011797)	TAPT1 (ENSCGOG00000011790)	prom1a (ENSCGOG00000011701)	fgfbp2a (ENSCGOG00000011692)	FGFBP1 (ENSCGOG00000011689)	anxa5a (ENSCGOG00000011681)	ccna2 (ENSCGOG00000011664)	bbs7 (ENSCGOG00000011337)	tmem33 (ENSCGOG00000011306)	phox2bb (ENSCGOG00000011304)	LIMCH1 (ENSCGOG00000011277)	ENSCGOG00000011270	nanos1 (ENSCGOG00000011266) ##22	lbx2 (ENSCGOG00000011264)	pcgf1 (ENSCGOG00000011259)	fgf24 (ENSCGOG00000011246)	npm1b (ENSCGOG00000011243)	tlx2 (ENSCGOG00000011239)	adad1 (ENSCGOG00000011237)	ENSCGOG00000011236	ENSCGOG00000011235	ENSCGOG00000011221	BBS12 (ENSCGOG00000011218)	fgf2 (ENSCGOG00000011213)	nudt6 (ENSCGOG00000011211)	ENSCGOG00000011207	SPATA5 (ENSCGOG00000010883)	spry1 (ENSCGOG00000010870)
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00990000209328	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000026550	FSTL5 (ENSMAMG00000016494)	qdpra (ENSMAMG00000016334)	ldb2a (ENSMAMG00000016290)	TAPT1 (ENSMAMG00000016214)	prom1a (ENSMAMG00000016090)	FGFBP1 (ENSMAMG00000016060)	anxa5a (ENSMAMG00000015911)	CCNA2 (ENSMAMG00000015888)	BBS7 (ENSMAMG00000015828)	TMEM33 (ENSMAMG00000015795)	ENSMAMG00000015788	LIMCH1 (ENSMAMG00000015744)	ENSMAMG00000015711	ENSMAMG00000015692	nanos1 (ENSMAMG00000028036) ##22	lbx2 (ENSMAMG00000015453)	pcgf1 (ENSMAMG00000015424)	fgf24 (ENSMAMG00000028535)	npm1b (ENSMAMG00000028041)	tlx2 (ENSMAMG00000027290)	adad1 (ENSMAMG00000015290)	ENSMAMG00000015275	ENSMAMG00000027504	ENSMAMG00000015239	ENSMAMG00000026314	ENSMAMG00000015230	BBS12 (ENSMAMG00000015225)	fgf2 (ENSMAMG00000027910)	NUDT6 (ENSMAMG00000015185)	SPATA5 (ENSMAMG00000015163)
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Climbing perch	MODERN SPECIES	1	FSTL5 (ENSATEG00000005067)	qdpra (ENSATEG00000029489)	ldb2a (ENSATEG00000005156)	TAPT1 (ENSATEG00000005194)	prom1a (ENSATEG00000005258)	fgfbp2a (ENSATEG00000026124)	FGFBP1 (ENSATEG00000005567)	anxa5a (ENSATEG00000005587)	CCNA2 (ENSATEG00000005793)	BBS7 (ENSATEG00000005807)	TMEM33 (ENSATEG00000005934)	ENSATEG00000005964	LIMCH1 (ENSATEG00000005984)	ENSATEG00000006043	ENSATEG00000006070	nanos1 (ENSATEG00000006118) ##22	lbx2 (ENSATEG00000006173)	pcgf1 (ENSATEG00000006177)	fgf24 (ENSATEG00000006224)	npm1b (ENSATEG00000028440)	tlx2 (ENSATEG00000025367)	adad1 (ENSATEG00000006279)	ENSATEG00000006418	ENSATEG00000006425	ENSATEG00000006431	BBS12 (ENSATEG00000006456)	fgf2 (ENSATEG00000006480)	NUDT6 (ENSATEG00000026250)	SPATA5 (ENSATEG00000006526)	spry1 (ENSATEG00000006604)	ANKRD50 (ENSATEG00000006612)
Siamese fighting fish	MODERN SPECIES	1	SPATA5 (ENSBSLG00000010000)	nudt6 (ENSBSLG00000009965)	fgf2 (ENSBSLG00000009955)	BBS12 (ENSBSLG00000009948)	ENSBSLG00000009892	ENSBSLG00000009868	ENSBSLG00000009849	ENSBSLG00000009824	adad1 (ENSBSLG00000009715)	tlx2 (ENSBSLG00000009406)	npm1b (ENSBSLG00000009397)	fgf24 (ENSBSLG00000009366)	pcgf1 (ENSBSLG00000009347)	lbx2 (ENSBSLG00000009334)	ctsz (ENSBSLG00000009300)	nanos1 (ENSBSLG00000009293) ##22	LIMCH1 (ENSBSLG00000009007)	phox2bb (ENSBSLG00000008910)	tmem33 (ENSBSLG00000008839)	bbs7 (ENSBSLG00000008815)	ccna2 (ENSBSLG00000008806)	anxa5a (ENSBSLG00000008797)	FGFBP1 (ENSBSLG00000008796)	fgfbp2a (ENSBSLG00000008790)	prom1a (ENSBSLG00000007945)	TAPT1 (ENSBSLG00000007016)	ldb2a (ENSBSLG00000006580)	qdpra (ENSBSLG00000024697)	fstl5 (ENSBSLG00000024573)	RAPGEF2 (ENSBSLG00000023154)	ENSBSLG00000022957
Carangaria	ANCESTRAL SPECIES	15	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Barramundi perch	MODERN SPECIES	178														ENSLCAG00010001373	ctsz (ENSLCAG00010001378)	nanos1 (ENSLCAG00010001382) ##22	lbx2 (ENSLCAG00010001383)	pcgf1 (ENSLCAG00010001389)	fgf24 (ENSLCAG00010001396)	npm1b (ENSLCAG00010001406)	tlx2 (ENSLCAG00010001411)	adad1 (ENSLCAG00010001420)	ENSLCAG00010001437	ENSLCAG00010001442	ENSLCAG00010001446	fgf2 (ENSLCAG00010001459)	nudt6 (ENSLCAG00010001463)	SPATA5 (ENSLCAG00010001487)	spry1 (ENSLCAG00010001560)	ANKRD50 (ENSLCAG00010001561)	ENSLCAG00010001562
Seriola	ANCESTRAL SPECIES	31	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000179668	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Yellowtail amberjack	MODERN SPECIES	3227						anxa5a (ENSSLDG00000020728)	ccna2 (ENSSLDG00000020748)	bbs7 (ENSSLDG00000020761)	tmem33 (ENSSLDG00000020781)	phox2bb (ENSSLDG00000020789)	ENSSLDG00000020803	ENSSLDG00000020821	ENSSLDG00000020834	ENSSLDG00000020846	ctsz (ENSSLDG00000020890)	nanos1 (ENSSLDG00000021260) ##22	lbx2 (ENSSLDG00000021319)	pcgf1 (ENSSLDG00000021330)	fgf24 (ENSSLDG00000021371)	npm1b (ENSSLDG00000021396)	tlx2 (ENSSLDG00000021412)	adad1 (ENSSLDG00000021425)	ENSSLDG00000021457	ENSSLDG00000021473	ENSSLDG00000021485	ENSSLDG00000021513	BBS12 (ENSSLDG00000021525)	fgf2 (ENSSLDG00000021538)	nudt6 (ENSSLDG00000021544)	SPATA5 (ENSSLDG00000021560)	spry1 (ENSSLDG00000021577)
Greater amberjack	MODERN SPECIES	113	fstl5 (ENSSDUG00000008435)	qdpra (ENSSDUG00000008398)	ldb2a (ENSSDUG00000008359)	TAPT1 (ENSSDUG00000008283)	prom1a (ENSSDUG00000008149)	fgfbp2a (ENSSDUG00000008124)	anxa5a (ENSSDUG00000008109)	ccna2 (ENSSDUG00000008091)	bbs7 (ENSSDUG00000008052)	tmem33 (ENSSDUG00000008030)	phox2bb (ENSSDUG00000008009)	ENSSDUG00000007997	ENSSDUG00000007963	ENSSDUG00000007959	ctsz (ENSSDUG00000007940)	nanos1 (ENSSDUG00000007879) ##22	ENSSDUG00000007863	lbx2 (ENSSDUG00000007835)	pcgf1 (ENSSDUG00000007795)	fgf24 (ENSSDUG00000007744)	npm1b (ENSSDUG00000007726)	tlx2 (ENSSDUG00000007708)	ENSSDUG00000007693	ENSSDUG00000007672	ENSSDUG00000007637	ENSSDUG00000007624	adad1 (ENSSDUG00000007569)	fgf2 (ENSSDUG00000007551)	nudt6 (ENSSDUG00000007536)	SPATA5 (ENSSDUG00000007514)	spry1 (ENSSDUG00000007505)
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Tongue sole	MODERN SPECIES	6	ENSCSEG00000004681	pmt (ENSCSEG00000004664)	MID2 (ENSCSEG00000004649)	TSC22D3 (ENSCSEG00000004629)	PCDH11Y (ENSCSEG00000004620)	ENSCSEG00000004611	anxa5a (ENSCSEG00000004605)	ccna2 (ENSCSEG00000004599)	bbs7 (ENSCSEG00000004585)	tmem33 (ENSCSEG00000004578)	phox2bb (ENSCSEG00000004572)	ENSCSEG00000004569	ENSCSEG00000004565	ENSCSEG00000004563	ctsz (ENSCSEG00000004552)	nanos1 (ENSCSEG00000004547) ##22	lbx2 (ENSCSEG00000004546)	pcgf1 (ENSCSEG00000004544)	fgf24 (ENSCSEG00000004534)	npm1b (ENSCSEG00000004530)	ENSCSEG00000004526	ENSCSEG00000004521	adad1 (ENSCSEG00000004516)	ENSCSEG00000004512	ENSCSEG00000004511	BBS12 (ENSCSEG00000004509)	fgf2 (ENSCSEG00000004508)	nudt6 (ENSCSEG00000004505)	SPATA5 (ENSCSEG00000004499)	spry1 (ENSCSEG00000004498)	ENSCSEG00000004494
Turbot	MODERN SPECIES	4	FSTL5 (ENSSMAG00000008858)	qdpra (ENSSMAG00000008823)	ldb2a (ENSSMAG00000008806)	TAPT1 (ENSSMAG00000008743)	prom1a (ENSSMAG00000008631)	fgfbp2a (ENSSMAG00000008609)	ENSSMAG00000008603	anxa5a (ENSSMAG00000008545)	CCNA2 (ENSSMAG00000008532)	BBS7 (ENSSMAG00000008476)	TMEM33 (ENSSMAG00000008440)	ENSSMAG00000022063	ENSSMAG00000008200	ENSSMAG00000008166	ENSSMAG00000008160	nanos1 (ENSSMAG00000028442) ##22	lbx2 (ENSSMAG00000008154)	pcgf1 (ENSSMAG00000008128)	fgf24 (ENSSMAG00000030102)	npm1b (ENSSMAG00000034406)	tlx2 (ENSSMAG00000008078)	adad1 (ENSSMAG00000008001)	ENSSMAG00000007988	ENSSMAG00000007983	ENSSMAG00000007970	ENSSMAG00000031831	ENSSMAG00000007964	BBS12 (ENSSMAG00000007962)	ENSSMAG00000033472	ENSSMAG00000007893	nudt6 (ENSSMAG00000007874)
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Oryzias	ANCESTRAL SPECIES	37	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495.n	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00940000155116.b
Oryzias_b	ANCESTRAL SPECIES	23	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495.n	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00940000155116.b
Indian medaka	MODERN SPECIES	8	cfap20dc (ENSOMEG00000002553)	olfch1 (ENSOMEG00000002634)	fstl5 (ENSOMEG00000002696)	qdpra (ENSOMEG00000002713)	ENSOMEG00000002719	ldb2a (ENSOMEG00000002731)	prom1a (ENSOMEG00000002864)	fgfbp2a (ENSOMEG00000002916)	anxa5a (ENSOMEG00000002931)	ENSOMEG00000002942	ccna2 (ENSOMEG00000002951)	bbs7 (ENSOMEG00000002989)	tmem33 (ENSOMEG00000003014)	phox2bb (ENSOMEG00000003025)	LIMCH1 (ENSOMEG00000003079)	nanos1 (ENSOMEG00000003107) ##22	lbx2 (ENSOMEG00000003113)	pcgf1 (ENSOMEG00000003141)	ENSOMEG00000003153	ENSOMEG00000003166	ENSOMEG00000003185	ENSOMEG00000003225	blcap (ENSOMEG00000003240)	mcm2 (ENSOMEG00000003267)	lmcd1 (ENSOMEG00000003298)	ENSOMEG00000003313	trnt1 (ENSOMEG00000003331)	mitfa (ENSOMEG00000003364)	zgc:113054 (ENSOMEG00000003392)	ENSOMEG00000003410	foxp1b (ENSOMEG00000003447)
Javanese ricefish	MODERN SPECIES	1	ENSOJAG00000007253	RAPGEF2 (ENSOJAG00000005890)	fstl5 (ENSOJAG00000009566)	ENSOJAG00000009507	qdpra (ENSOJAG00000009495)	ldb2a (ENSOJAG00000009447)	TAPT1 (ENSOJAG00000009153)	prom1a (ENSOJAG00000007018)	fgfbp2a (ENSOJAG00000006768)	ENSOJAG00000006761	anxa5a (ENSOJAG00000006663)	bbs7 (ENSOJAG00000006324)	tmem33 (ENSOJAG00000006285)	phox2bb (ENSOJAG00000006262)	ENSOJAG00000006197	nanos1 (ENSOJAG00000006186) ##22	lbx2 (ENSOJAG00000006164)	pcgf1 (ENSOJAG00000006122)	ENSOJAG00000006072	fgf24 (ENSOJAG00000006025)	npm1b (ENSOJAG00000006012)	tlx2 (ENSOJAG00000005979)	adad1 (ENSOJAG00000005960)	ENSOJAG00000005925	ENSOJAG00000005869	ENSOJAG00000005853	BBS12 (ENSOJAG00000005841)	fgf2 (ENSOJAG00000005830)	nudt6 (ENSOJAG00000005819)	SPATA5 (ENSOJAG00000005358)	ANKRD50 (ENSOJAG00000005310)
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000183135.B.a.b ##22
Chinese medaka	MODERN SPECIES	4432																nanos1 (ENSOSIG00000005656) ##22
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b	ENSGT00940000155719.b
Mangrove rivulus	MODERN SPECIES	40	ENSKMAG00000009434	RAPGEF2 (ENSKMAG00000009377)	fstl5 (ENSKMAG00000009295)	qdpra (ENSKMAG00000009235)	ldb2a (ENSKMAG00000009177)	TAPT1 (ENSKMAG00000009089)	prom1a (ENSKMAG00000008901)	ENSKMAG00000008840	anxa5a (ENSKMAG00000008817)	ccna2 (ENSKMAG00000008797)	bbs7 (ENSKMAG00000008717)	tmem33 (ENSKMAG00000008662)	phox2bb (ENSKMAG00000008645)	LIMCH1 (ENSKMAG00000008557)	ctsz (ENSKMAG00000008511)	nanos1 (ENSKMAG00000008477) ##22	ENSKMAG00000008455	lbx2 (ENSKMAG00000008434)	pcgf1 (ENSKMAG00000008357)	fgf24 (ENSKMAG00000008285)	npm1b (ENSKMAG00000008260)	tlx2 (ENSKMAG00000008236)	adad1 (ENSKMAG00000008195)	ENSKMAG00000008169	ENSKMAG00000008155	ENSKMAG00000008129	BBS12 (ENSKMAG00000008108)	fgf2 (ENSKMAG00000008092)	nudt6 (ENSKMAG00000008076)	SPATA5 (ENSKMAG00000008038)	spry1 (ENSKMAG00000008028)
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015001759	QDPRA (ENSNFUG00015001764)	ldb2a (ENSNFUG00015001789)	TAPT1 (ENSNFUG00015001874)	PROM1A (ENSNFUG00015002070)	ENSNFUG00015002281	CCNA2 (ENSNFUG00015002286)	fgfbp2a (ENSNFUG00015002300)	ENSNFUG00015002302	ANXA5A (ENSNFUG00015002322)	bbs7 (ENSNFUG00015002409)	tmem33 (ENSNFUG00015002439)	phox2bb (ENSNFUG00015002444)	LIMCH1 (ENSNFUG00015002450)	ctsz (ENSNFUG00015002469)	NANOS1A (ENSNFUG00015002473) ##22	ENSNFUG00015002475	lbx2 (ENSNFUG00015002476)	PCGF1 (ENSNFUG00015002480)	ENSNFUG00015002491	ENSNFUG00015002493	ENSNFUG00015002496	SPRY1 (ENSNFUG00015002498)	CETN4 (ENSNFUG00015002501)	BBS12 (ENSNFUG00015002504)	FGF2 (ENSNFUG00015002506)	NUDT6 (ENSNFUG00015002512)	ENSNFUG00015002523	ANKRD50 (ENSNFUG00015002542)	ENSNFUG00015002553	ENSNFUG00015002558
Cyprinodontoidei	ANCESTRAL SPECIES	23	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
NAME_4	ANCESTRAL SPECIES	23	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b	ENSGT01020000230338.a.b.b.a.a.a.a
Mummichog	MODERN SPECIES	2280	qdpra (ENSFHEG00000019251)	ENSFHEG00000019273	ENSFHEG00000019295	ldb2a (ENSFHEG00000019335)	TAPT1 (ENSFHEG00000019387)	prom1a (ENSFHEG00000019858)	fgfbp2a (ENSFHEG00000019879)	ENSFHEG00000019892	anxa5a (ENSFHEG00000020501)	ccna2 (ENSFHEG00000020527)	bbs7 (ENSFHEG00000020539)	tmem33 (ENSFHEG00000020568)	phox2bb (ENSFHEG00000020583)	LIMCH1 (ENSFHEG00000020645)	ctsz (ENSFHEG00000020684)	nanos1 (ENSFHEG00000020713) ##22	lbx2 (ENSFHEG00000020722)	pcgf1 (ENSFHEG00000020761)	fgf24 (ENSFHEG00000020790)	npm1b (ENSFHEG00000020794)	tlx2 (ENSFHEG00000020819)	adad1 (ENSFHEG00000020841)	ENSFHEG00000020860	ENSFHEG00000020869
Sheepshead minnow	MODERN SPECIES	354				ldb2a (ENSCVAG00000013945)	TAPT1 (ENSCVAG00000013872)	prom1a (ENSCVAG00000013849)	fgfbp2a (ENSCVAG00000013640)	ENSCVAG00000013630	anxa5a (ENSCVAG00000013616)	ccna2 (ENSCVAG00000013540)	bbs7 (ENSCVAG00000013522)	tmem33 (ENSCVAG00000013465)	phox2bb (ENSCVAG00000013444)	LIMCH1 (ENSCVAG00000013432)	ctsz (ENSCVAG00000013372)	nanos1 (ENSCVAG00000013105) ##22	lbx2 (ENSCVAG00000013082)	pcgf1 (ENSCVAG00000013076)	fgf24 (ENSCVAG00000013040)	npm1b (ENSCVAG00000013016)	tlx2 (ENSCVAG00000013004)
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00940000156418.i	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.u	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000178335	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Platyfish	MODERN SPECIES	15	RAPGEF2 (ENSXMAG00000002141)	fstl5 (ENSXMAG00000002127)	qdpra (ENSXMAG00000027800)	ldb2a (ENSXMAG00000025031)	TAPT1 (ENSXMAG00000002104)	prom1a (ENSXMAG00000002075)	fgfbp2a (ENSXMAG00000020069)	ENSXMAG00000020068	anxa5a (ENSXMAG00000002063)	ccna2 (ENSXMAG00000002057)	bbs7 (ENSXMAG00000002045)	tmem33 (ENSXMAG00000002033)	phox2bb (ENSXMAG00000022004)	LIMCH1 (ENSXMAG00000002013)	ctsz (ENSXMAG00000002006)	nanos1 (ENSXMAG00000024788) ##22	lbx2 (ENSXMAG00000023338)	pcgf1 (ENSXMAG00000001994)	fgf24 (ENSXMAG00000001991)	npm1b (ENSXMAG00000001986)	tlx2 (ENSXMAG00000001982)	adad1 (ENSXMAG00000001973)	ENSXMAG00000021547	ENSXMAG00000021606	ENSXMAG00000025999	ENSXMAG00000024440	BBS12 (ENSXMAG00000019978)	fgf2 (ENSXMAG00000024887)	nudt6 (ENSXMAG00000029886)	SPATA5 (ENSXMAG00000018356)	ENSXMAG00000023826
Poecilia	ANCESTRAL SPECIES	43	ENSGT00940000156418.i	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.u	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000178335	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Guppy	MODERN SPECIES	440	RAPGEF2 (ENSPREG00000007668)	fstl5 (ENSPREG00000007568)	qdpra (ENSPREG00000007514)	ldb2a (ENSPREG00000007490)	TAPT1 (ENSPREG00000007416)	prom1a (ENSPREG00000007237)	FGFBP1 (ENSPREG00000007194)	anxa5a (ENSPREG00000007171)	ccna2 (ENSPREG00000007160)	bbs7 (ENSPREG00000007058)	tmem33 (ENSPREG00000007019)	phox2bb (ENSPREG00000006998)	ENSPREG00000006982	ENSPREG00000006962	ctsz (ENSPREG00000006931)	nanos1 (ENSPREG00000006901) ##22	lbx2 (ENSPREG00000006878)	pcgf1 (ENSPREG00000006831)	fgf24 (ENSPREG00000006807)	npm1b (ENSPREG00000006780)	tlx2 (ENSPREG00000006758)	adad1 (ENSPREG00000006635)	ENSPREG00000006594	ENSPREG00000006580	ENSPREG00000006573	BBS12 (ENSPREG00000006564)	fgf2 (ENSPREG00000006549)	nudt6 (ENSPREG00000006509)	SPATA5 (ENSPREG00000006478)	spry1 (ENSPREG00000006469)	ANKRD50 (ENSPREG00000006443)
NAME_6	ANCESTRAL SPECIES	88	ENSGT00940000156418.i	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.u	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000178335	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Sailfin molly	MODERN SPECIES	1470															ctsz (ENSPLAG00000005037)	nanos1 (ENSPLAG00000005060) ##22
Amazon molly	MODERN SPECIES	291	fstl5 (ENSPFOG00000018610)	qdpra (ENSPFOG00000018572)	ldb2a (ENSPFOG00000018565)	TAPT1 (ENSPFOG00000018551)	prom1a (ENSPFOG00000018506)	fgfbp2a (ENSPFOG00000018472)	ENSPFOG00000020534	anxa5a (ENSPFOG00000018455)	ccna2 (ENSPFOG00000018447)	bbs7 (ENSPFOG00000018430)	tmem33 (ENSPFOG00000018408)	phox2bb (ENSPFOG00000018404)	LIMCH1 (ENSPFOG00000018384)	ENSPFOG00000022273	ctsz (ENSPFOG00000018377)	nanos1 (ENSPFOG00000020533) ##22	lbx2 (ENSPFOG00000018375)	pcgf1 (ENSPFOG00000018369)	fgf24 (ENSPFOG00000018362)	npm1b (ENSPFOG00000018357)	tlx2 (ENSPFOG00000023389)	tlx2 (ENSPFOG00000018351)	adad1 (ENSPFOG00000018333)	ENSPFOG00000022419	ENSPFOG00000018322	BBS12 (ENSPFOG00000020831)	fgf2 (ENSPFOG00000018316)	nudt6 (ENSPFOG00000018308)	SPATA5 (ENSPFOG00000018264)	spry1 (ENSPFOG00000020830)	ANKRD50 (ENSPFOG00000020829)
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000010494	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000010494	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Midas cichlid	MODERN SPECIES	1085	fstl5 (ENSACIG00000017506)	ENSACIG00000017531	qdpra (ENSACIG00000017538)	ldb2a (ENSACIG00000017551)	TAPT1 (ENSACIG00000017571)	prom1a (ENSACIG00000017637)	fgfbp2a (ENSACIG00000018129)	FGFBP1 (ENSACIG00000018138)	anxa5a (ENSACIG00000018207)	ccna2 (ENSACIG00000018789)	bbs7 (ENSACIG00000018877)	tmem33 (ENSACIG00000018904)	phox2bb (ENSACIG00000018923)	ENSACIG00000018949	ENSACIG00000019005	nanos1 (ENSACIG00000019022) ##22	lbx2 (ENSACIG00000019040)	pcgf1 (ENSACIG00000019051)	fgf24 (ENSACIG00000019068)	npm1b (ENSACIG00000019100)	tlx2 (ENSACIG00000019132)	adad1 (ENSACIG00000019144)	ENSACIG00000019188	ENSACIG00000019197	ENSACIG00000019216	BBS12 (ENSACIG00000019319)	fgf2 (ENSACIG00000019324)	nudt6 (ENSACIG00000019330)	SPATA5 (ENSACIG00000019337)	spry1 (ENSACIG00000019367)	ENSACIG00000019374
Pseudocrenilabrinae	ANCESTRAL SPECIES	27	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000010494	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	31	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00390000010494	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Haplochromini	ANCESTRAL SPECIES	25	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000178854	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Burton s mouthbrooder	MODERN SPECIES	331						prom1a (ENSHBUG00000019421)	fgfbp2a (ENSHBUG00000019438)	FGFBP1 (ENSHBUG00000019455)	anxa5a (ENSHBUG00000019466)	ccna2 (ENSHBUG00000019528)	bbs7 (ENSHBUG00000019575)	tmem33 (ENSHBUG00000019618)	phox2bb (ENSHBUG00000019627)	ENSHBUG00000019640	ENSHBUG00000019684	nanos1 (ENSHBUG00000019798) ##22	lbx2 (ENSHBUG00000019810)	pcgf1 (ENSHBUG00000019867)	fgf24 (ENSHBUG00000019893)	npm1b (ENSHBUG00000019903)	tlx2 (ENSHBUG00000019937)	ENSHBUG00000020412	adad1 (ENSHBUG00000020450)	ENSHBUG00000020467	ENSHBUG00000020509	ENSHBUG00000020519	BBS12 (ENSHBUG00000020522)	fgf2 (ENSHBUG00000020530)	nudt6 (ENSHBUG00000020546)	SPATA5 (ENSHBUG00000020554)	spry1 (ENSHBUG00000020564)
Haplochromini_A	ANCESTRAL SPECIES	28	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000178854	ENSGT00940000175879	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a
P. nyererei	MODERN SPECIES	315	fstl5 (ENSPNYG00000000677)	qdpra (ENSPNYG00000000729)	ldb2a (ENSPNYG00000000755)	TAPT1 (ENSPNYG00000000787)	prom1a (ENSPNYG00000000823)	fgfbp2a (ENSPNYG00000000907)	FGFBP1 (ENSPNYG00000000927)	anxa5a (ENSPNYG00000000939)	ccna2 (ENSPNYG00000001054)	bbs7 (ENSPNYG00000001093)	tmem33 (ENSPNYG00000001141)	phox2bb (ENSPNYG00000001177)	ENSPNYG00000001215	ENSPNYG00000001240	ENSPNYG00000001281	nanos1 (ENSPNYG00000001325) ##22	lbx2 (ENSPNYG00000001372)	pcgf1 (ENSPNYG00000001378)	fgf24 (ENSPNYG00000001402)	npm1b (ENSPNYG00000001427)	tlx2 (ENSPNYG00000001436)	adad1 (ENSPNYG00000001453)	ENSPNYG00000001502	ENSPNYG00000001525	ENSPNYG00000001585	BBS12 (ENSPNYG00000001613)	fgf2 (ENSPNYG00000001640)	nudt6 (ENSPNYG00000001657)	SPATA5 (ENSPNYG00000001697)	spry1 (ENSPNYG00000001768)	ANKRD50 (ENSPNYG00000001776)
Haplochromini_B	ANCESTRAL SPECIES	45	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000178854	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Eastern happy	MODERN SPECIES	11	ENSACLG00000012369	fstl5 (ENSACLG00000012483)	qdpra (ENSACLG00000012578)	ldb2a (ENSACLG00000012598)	TAPT1 (ENSACLG00000012655)	prom1a (ENSACLG00000012734)	fgfbp2a (ENSACLG00000013013)	FGFBP1 (ENSACLG00000013018)	anxa5a (ENSACLG00000013020)	ccna2 (ENSACLG00000013032)	bbs7 (ENSACLG00000013055)	tmem33 (ENSACLG00000013064)	phox2bb (ENSACLG00000013362)	LIMCH1 (ENSACLG00000013368)	ENSACLG00000013472	nanos1 (ENSACLG00000013474) ##22	lbx2 (ENSACLG00000013753)	pcgf1 (ENSACLG00000013756)	fgf24 (ENSACLG00000013791)	npm1b (ENSACLG00000013812)	tlx2 (ENSACLG00000013823)	adad1 (ENSACLG00000013906)	adad1 (ENSACLG00000013974)	ENSACLG00000013999	ENSACLG00000014008	ENSACLG00000014019	BBS12 (ENSACLG00000014069)	fgf2 (ENSACLG00000014102)	nudt6 (ENSACLG00000014111)	SPATA5 (ENSACLG00000014212)	spry1 (ENSACLG00000014279)
Zebra mbuna	MODERN SPECIES	1102	RAPGEF2 (ENSMZEG00005002059)	fstl5 (ENSMZEG00005002191)	qdpra (ENSMZEG00005002244)	ldb2a (ENSMZEG00005002272)	TAPT1 (ENSMZEG00005002312)	prom1a (ENSMZEG00005002355)	fgfbp2a (ENSMZEG00005002458)	FGFBP1 (ENSMZEG00005002471)	anxa5a (ENSMZEG00005002493)	ccna2 (ENSMZEG00005002532)	bbs7 (ENSMZEG00005002574)	tmem33 (ENSMZEG00005002633)	phox2bb (ENSMZEG00005002657)	LIMCH1 (ENSMZEG00005002675)	ENSMZEG00005002711	nanos1 (ENSMZEG00005002722) ##22	lbx2 (ENSMZEG00005002756)	pcgf1 (ENSMZEG00005002774)	fgf24 (ENSMZEG00005002819)	ENSMZEG00005002840	tlx2 (ENSMZEG00005002903)	adad1 (ENSMZEG00005002920)	ENSMZEG00005002934	ENSMZEG00005002951	ENSMZEG00005002992	BBS12 (ENSMZEG00005003011)	fgf2 (ENSMZEG00005003019)	nudt6 (ENSMZEG00005003029)	SPATA5 (ENSMZEG00005003059)	spry1 (ENSMZEG00005003130)	ANKRD50 (ENSMZEG00005003150)
Lyretail cichlid	MODERN SPECIES	348	fstl5 (ENSNBRG00000013597)	qdpra (ENSNBRG00000013631)	ldb2a (ENSNBRG00000013658)	TAPT1 (ENSNBRG00000013674)	prom1a (ENSNBRG00000013716)	fgfbp2a (ENSNBRG00000013763)	FGFBP1 (ENSNBRG00000013772)	anxa5a (ENSNBRG00000013787)	ccna2 (ENSNBRG00000013847)	bbs7 (ENSNBRG00000013875)	tmem33 (ENSNBRG00000013931)	phox2bb (ENSNBRG00000013959)	ENSNBRG00000013975	ENSNBRG00000013986	ENSNBRG00000013997	nanos1 (ENSNBRG00000014018) ##22	lbx2 (ENSNBRG00000014077)	pcgf1 (ENSNBRG00000014093)	fgf24 (ENSNBRG00000014124)	npm1b (ENSNBRG00000014133)	tlx2 (ENSNBRG00000014142)	adad1 (ENSNBRG00000014156)	ENSNBRG00000014187	ENSNBRG00000014213	BBS12 (ENSNBRG00000014222)	fgf2 (ENSNBRG00000014241)	nudt6 (ENSNBRG00000014249)	SPATA5 (ENSNBRG00000014268)	spry1 (ENSNBRG00000014350)	ANKRD50 (ENSNBRG00000014364)	ENSNBRG00000014373
Pomacentridae	ANCESTRAL SPECIES	58					ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00990000208107	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323.j	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Bicolor damselfish	MODERN SPECIES	252												phox2bb (ENSSPAG00000010513)	ENSSPAG00000010579	ENSSPAG00000010850	ENSSPAG00000010883	nanos1 (ENSSPAG00000011053) ##22	lbx2 (ENSSPAG00000011078)	pcgf1 (ENSSPAG00000011090)	fgf24 (ENSSPAG00000011117)	npm1b (ENSSPAG00000011152)	tlx2 (ENSSPAG00000011182)	adad1 (ENSSPAG00000011210)	ENSSPAG00000011301	ENSSPAG00000011340	ENSSPAG00000011347	BBS12 (ENSSPAG00000011361)	fgf2 (ENSSPAG00000011370)	nudt6 (ENSSPAG00000011374)	SPATA5 (ENSSPAG00000011393)	spry1 (ENSSPAG00000011430)	ANKRD50 (ENSSPAG00000011437)
Pomacentridae_A	ANCESTRAL SPECIES	60					ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00990000208107	ENSGT00950000183135.B.a.b ##22	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405	ENSGT00940000165256	ENSGT00940000156842	ENSGT00940000177064	ENSGT00940000175879	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323.j	ENSGT00950000183055.b.a	ENSGT00940000155116.b
Spiny chromis	MODERN SPECIES	68															ENSAPOG00000004431	nanos1 (ENSAPOG00000004421) ##22	ENSAPOG00000004385	lbx2 (ENSAPOG00000004365)	pcgf1 (ENSAPOG00000004335)	fgf24 (ENSAPOG00000004293)	npm1b (ENSAPOG00000004268)	tlx2 (ENSAPOG00000004247)	adad1 (ENSAPOG00000004214)	ENSAPOG00000004139	ENSAPOG00000004111	ENSAPOG00000004075	BBS12 (ENSAPOG00000004057)	fgf2 (ENSAPOG00000004050)	nudt6 (ENSAPOG00000004041)	SPATA5 (ENSAPOG00000004022)	spry1 (ENSAPOG00000003947)
Amphiprion	ANCESTRAL SPECIES	256				ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b.a	ENSGT00990000208107	ENSGT00940000155317.a.b.b	ENSGT00950000183135.B.a.b ##22
Clown anemonefish	MODERN SPECIES	2166															ENSAOCG00000012422	nanos1 (ENSAOCG00000012346) ##22
Orange clownfish	MODERN SPECIES	4	tlx2 (ENSAPEG00000000879)	npm1b (ENSAPEG00000000868)	fgf24 (ENSAPEG00000000818)	pcgf1 (ENSAPEG00000000782)	lbx2 (ENSAPEG00000000769)	prom1a (ENSAPEG00000000672)	ENSAPEG00000000648	anxa5a (ENSAPEG00000000308)	ccna2 (ENSAPEG00000019431)	bbs7 (ENSAPEG00000019379)	tmem33 (ENSAPEG00000019346)	phox2bb (ENSAPEG00000019328)	LIMCH1 (ENSAPEG00000019181)	ENSAPEG00000019147	ENSAPEG00000019062	nanos1 (ENSAPEG00000019024) ##22	ENSAPEG00000019013	mif (ENSAPEG00000019008)	ENSAPEG00000018986	ENSAPEG00000018977	kctd16a (ENSAPEG00000018972)	nr3c1 (ENSAPEG00000018955)	fgf1a (ENSAPEG00000018936)	NDFIP1 (ENSAPEG00000018901)	gnpda1 (ENSAPEG00000018868)	hspa4b (ENSAPEG00000018807)	uqcrq (ENSAPEG00000018787)	gdf9 (ENSAPEG00000018761)	ENSAPEG00000018738	septin8b (ENSAPEG00000018701)	ccng1 (ENSAPEG00000018681)
Elephant shark	MODERN SPECIES	1596	ENSCMIG00000018493	ENSCMIG00000018496	ENO4 (ENSCMIG00000018501) #12	ENSCMIG00000018505 #13	ATP6V1B2 (ENSCMIG00000018522)	vax1 (ENSCMIG00000018591) #14	ENSCMIG00000018595	slc18a2 (ENSCMIG00000018605) #16	PDZD8 (ENSCMIG00000018620) #17	emx2 (ENSCMIG00000018622) #18	RAB11FIP2 (ENSCMIG00000018624) #19	ENSCMIG00000018626 #20	ENSCMIG00000018627	PRLHR (ENSCMIG00000018628)	CACUL1 (ENSCMIG00000018633) #21	NANOS1 (ENSCMIG00000018638) #22	eif3s10 (ENSCMIG00000018659) #23	dennd10 (ENSCMIG00000018705)	ENSCMIG00000018707 #25	GPAM (ENSCMIG00000018723)	ADRA2A (ENSCMIG00000018757)	shoc2 (ENSCMIG00000018760)	bbip1 (ENSCMIG00000018763)	pdcd4b (ENSCMIG00000018773)	RBM20 (ENSCMIG00000018795)	smc3 (ENSCMIG00000018850)	smndc1 (ENSCMIG00000018952)	mxi1 (ENSCMIG00000018955)	add3a (ENSCMIG00000018974)	ENSCMIG00000018998	xpnpep1 (ENSCMIG00000019013)
Cyclostomata	ANCESTRAL SPECIES	82																ENSGT00950000183135.B #22	ENSGT00730000111063 #23	ENSGT00940000164222	ENSGT00940000159585.i
Lamprey	MODERN SPECIES	722																ENSPMAG00000010329 #22	eif3s10 (ENSPMAG00000005598) #23	dennd10 (ENSPMAG00000005695)	ptpra (ENSPMAG00000005714)	ENSPMAG00000010330
Hagfish	MODERN SPECIES	33																ENSEBUG00000002646 #22	eif3s10 (ENSEBUG00000000593) #23	dennd10 (ENSEBUG00000008097)	ptpra (ENSEBUG00000006982)
Ciona	ANCESTRAL SPECIES																	ENSGT00950000183135.B #22
Ciona intestinalis	MODERN SPECIES	758														ENSCING00000010709	ENSCING00000015018	ENSCING00000004449 #22	ENSCING00000004450	ENSCING00000004481	ENSCING00000004501
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000183135.B #22
Fruitfly	MODERN SPECIES	19	GatA (FBgn0260779)	NP15.6 (FBgn0027785)	P5cr (FBgn0015781)	Prp18 (FBgn0027784)	CG6013 (FBgn0038675)	CG6026 (FBgn0038676)	cdi (FBgn0004876)	mRpL55 (FBgn0038678)	ATPsynD (FBgn0016120)	CG6040 (FBgn0038679)	Cyp12a5 (FBgn0038680)	Cyp12a4 (FBgn0038681)	Ppcs (FBgn0261285)	CG5835 (FBgn0038682)	CG11779 (FBgn0038683)	nos (FBgn0002962) #22	Nsun5 (FBgn0259704)	CG42359 (FBgn0259705)	sqz (FBgn0010768)	CG14282 (FBgn0038685)	CG5555 (FBgn0038686)	myd (FBgn0051475)	cry (FBgn0025680)	vib (FBgn0267975)	CG11703 (FBgn0038690)	CG5250 (FBgn0038691)	Polr2M (FBgn0038692)	unc79 (FBgn0038693)	CG5217 (FBgn0038694)	CG14280 (FBgn0038695)	CG44174 (FBgn0265063)
Caenorhabditis elegans	MODERN SPECIES	1	unc-53 (WBGene00006788)	F45E10.2 (WBGene00009729)	ilkp-1 (WBGene00009354)	sdhd-1 (WBGene00009353)	F33A8.4 (WBGene00009352)	col-83 (WBGene00000658)	cey-1 (WBGene00000472)	F33A8.10 (WBGene00009356)	nlp-18 (WBGene00003756)	F33A8.7 (WBGene00009355)	let-858 (WBGene00002957)	ram-2 (WBGene00004300)	col-81 (WBGene00000657)	ptp-3 (WBGene00004215)	R03D7.8 (WBGene00010992)	nos-1 (WBGene00003783) #22	gst-5 (WBGene00001753)	R03D7.5 (WBGene00010991)	tceb-3 (WBGene00010990)	R03D7.15 (WBGene00219205)	R03D7.2 (WBGene00010989)	metr-1 (WBGene00010988)	Y19D2B.2 (WBGene00012490)	Y19D2B.1 (WBGene00012489)	tba-4 (WBGene00006530)	F44F4.10 (WBGene00009705)	F44F4.9 (WBGene00009704)	F44F4.15 (WBGene00194850)	sra-11 (WBGene00005037)	sra-12 (WBGene00005038)	gly-1 (WBGene00001626)
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000183135.A ##22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000183135.A ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183135.A ##22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Coelacanth	MODERN SPECIES	514											RSPH4A (ENSLACG00000016667)	SYMPK (ENSLACG00000016497)	foxa3 (ENSLACG00000016102)	IRF2BP1 (ENSLACG00000015853)	nova2 (ENSLACG00000015223)	ENSLACG00000014980 ##22	ENSLACG00000014891	ENSLACG00000014786	sycn.2 (ENSLACG00000014724)	DHX34 (ENSLACG00000014421)	ENSLACG00000014112	ENSLACG00000013126	ENSLACG00000012621	AP2S1 (ENSLACG00000012384)	ENSLACG00000010302	ENSLACG00000003934	hyal1 (ENSLACG00000000256)
Tetrapoda	ANCESTRAL SPECIES	549																ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B
Anura	ANCESTRAL SPECIES	86						ENSGT00940000153892.A	ENSGT00940000162258.a.a	ENSGT00650000093443	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00390000018039	ENSGT00940000157454	ENSGT00940000156484.a	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B	ENSGT01030000234517.F	ENSGT00500000044869.b	ENSGT00390000017045	ENSGT00450000040421	ENSGT00940000161740	ENSGT01030000234613.b.b	ENSGT00940000159555	ENSGT00950000182772.A.a.a.b	ENSGT00950000182970.C	ENSGT00940000160551	ENSGT00450000040362	ENSGT00940000160358	ENSGT00940000166395	ENSGT00940000160599
Frog	DUPLICATION
Frog	MODERN SPECIES	1	ENSXETG00000046345	trim16 (ENSXETG00000046686)	ENSXETG00000047037	metrnl (ENSXETG00000047408)	ENSXETG00000041560	ENSXETG00000033420	znf750 (ENSXETG00000020479)	tbcd (ENSXETG00000033254)	fn3k (ENSXETG00000026426)	ENSXETG00000045446	ENSXETG00000046882	kcnk1 (ENSXETG00000022808)	rab40b (ENSXETG00000046405)	foxk2 (ENSXETG00000041438)	ENSXETG00000046259	ENSXETG00000044985 ##22	ENSXETG00000047860	pirt (ENSXETG00000047189)	ENSXETG00000041875	wdr45b (ENSXETG00000022804)	ENSXETG00000048633	ENSXETG00000036751	shisa6 (ENSXETG00000042767)	dnah9 (ENSXETG00000025251)	myocd (ENSXETG00000011035)	map2k4 (ENSXETG00000011036)	adprm (ENSXETG00000011037)	tmem220 (ENSXETG00000000664)	adprm.2 (ENSXETG00000039023)	ENSXETG00000038493	XB22064855 [provisional:znf300] (ENSXETG00000048895)
Frog	MODERN SPECIES		fgfr3 (ENSXETG00000002396)	tacc3 (ENSXETG00000003874)	tmem129 (ENSXETG00000003875)	slbp (ENSXETG00000003876)	fam53a (ENSXETG00000003878)	nkx1-1 (ENSXETG00000003881)	uvssa (ENSXETG00000010677)	ENSXETG00000043260	maea (ENSXETG00000010676)	ctbp1 (ENSXETG00000021047)	spon2 (ENSXETG00000021044)	gp25l (ENSXETG00000032430)	RNF212 (ENSXETG00000041996)	ENSXETG00000042708	fgfrl1 (ENSXETG00000021042)	ENSXETG00000039689 ##22	atoh8 (ENSXETG00000041181)	ENSXETG00000047978	st3gal5 (ENSXETG00000001974)	polr1a (ENSXETG00000001952)	mrpl35 (ENSXETG00000028100)	krcc1 (ENSXETG00000043962)	smyd1 (ENSXETG00000001940)	fabp1 (ENSXETG00000001938)	thnsl2 (ENSXETG00000001936)	foxi4.2 (ENSXETG00000001934)	foxi4.1 (ENSXETG00000044613)	ENSXETG00000043414	ENSXETG00000040208	ENSXETG00000001930	eif2ak3 (ENSXETG00000001926)
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000018699	ENSLLEG00000018839	TBCB (ENSLLEG00000019327)	ENSLLEG00000019448	ENSLLEG00000019531	ENSLLEG00000019553	CLASRP (ENSLLEG00000019629)	ENSLLEG00000020362	ENSLLEG00000020529	NKPD1 (ENSLLEG00000020565)	ENSLLEG00000020605	PPP1R37 (ENSLLEG00000020642)	ENSLLEG00000020767	RELB (ENSLLEG00000020791)	CLPTM1 (ENSLLEG00000020915)	NANOS2 (ENSLLEG00000021141) ##22	ENSLLEG00000021180	ENSLLEG00000021328	ENSLLEG00000021857	SYMPK (ENSLLEG00000021981)	ENSLLEG00000022748	MYPOP (ENSLLEG00000022786)	ENSLLEG00000022829	ENSLLEG00000022901	MARK4 (ENSLLEG00000023164)	CKM (ENSLLEG00000023579)	ENSLLEG00000023902	ERCC2 (ENSLLEG00000023926)	PPP1R13L (ENSLLEG00000024038)	ENSLLEG00000024432	FOSB (ENSLLEG00000024468)
Amniota	ANCESTRAL SPECIES	123															ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00500000044869.a.b
Mammalia	ANCESTRAL SPECIES	75	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00970000193421.A	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000171396	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00390000017608	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000177245	ENSGT00940000153887.B
Theria	ANCESTRAL SPECIES	27	ENSGT00970000193421.A	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B
Eutheria	ANCESTRAL SPECIES	29	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Hedgehog	MODERN SPECIES	14939																NANOS2 (ENSEEUG00000009930) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Suina	ANCESTRAL SPECIES	2	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT00940000170636	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Pig	MODERN SPECIES	14	FKRP (ENSSSCG00000003103)	STRN4 (ENSSSCG00000003104)	PRKD2 (ENSSSCG00000026152)	DACT3 (ENSSSCG00000022280)	GNG8 (ENSSSCG00000022068)	PTGIR (ENSSSCG00000026602)	CALM3 (ENSSSCG00000022545)	CCDC8 (ENSSSCG00000033830)	ENSSSCG00000003102	PPP5C (ENSSSCG00000003098)	HIF3A (ENSSSCG00000003101)	ENSSSCG00000046511	PGLYRP1 (ENSSSCG00000038688)	CCDC61 (ENSSSCG00000003100)	NOVA2 (ENSSSCG00000035029)	NANOS2 (ENSSSCG00000003096) ##22	ENSSSCG00000035767	MYPOP (ENSSSCG00000038739)	FOXA3 (ENSSSCG00000003092)	SYMPK (ENSSSCG00000003093)	RSPH6A (ENSSSCG00000040714)	DMWD (ENSSSCG00000038738)	DMPK (ENSSSCG00000038969)	SIX5 (ENSSSCG00000035791)	MEIOSIN (ENSSSCG00000039916)	FBXO46 (ENSSSCG00000038367)	QPCTL (ENSSSCG00000032819)	SNRPD2 (ENSSSCG00000033500)	GIPR (ENSSSCG00000021053)	EML2 (ENSSSCG00000038229)	GPR4 (ENSSSCG00000037184)
Chacoan peccary	MODERN SPECIES	799	ARHGAP35 (ENSCWAG00000010834)	AP2S1 (ENSCWAG00000010683)	SLC1A5 (ENSCWAG00000010631)	FKRP (ENSCWAG00000010618)	STRN4 (ENSCWAG00000010545)	PRKD2 (ENSCWAG00000010476)	DACT3 (ENSCWAG00000010426)	GNG8 (ENSCWAG00000010405)	PTGIR (ENSCWAG00000010365)	CALM3 (ENSCWAG00000010293)	PPP5C (ENSCWAG00000010062)	HIF3A (ENSCWAG00000008758)	PGLYRP1 (ENSCWAG00000008579)	CCDC61 (ENSCWAG00000008530)	NOVA2 (ENSCWAG00000008485)	NANOS2 (ENSCWAG00000008461) ##22	ENSCWAG00000008443	MYPOP (ENSCWAG00000008415)	IRF2BP1 (ENSCWAG00000008392)	FOXA3 (ENSCWAG00000008358)	SYMPK (ENSCWAG00000008306)	RSPH6A (ENSCWAG00000008233)	DMWD (ENSCWAG00000008169)	DMPK (ENSCWAG00000008009)	SIX5 (ENSCWAG00000007894)	FBXO46 (ENSCWAG00000007733)	QPCTL (ENSCWAG00000007680)	SNRPD2 (ENSCWAG00000007655)	GIPR (ENSCWAG00000007383)	EML2 (ENSCWAG00000006972)	GPR4 (ENSCWAG00000006910)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Camelidae	ANCESTRAL SPECIES	15	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00990000210495	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	35	STRN4 (ENSCDRG00005000314)	PRKD2 (ENSCDRG00005000229)	ENSCDRG00005000209	ENSCDRG00005012438	PTGIR (ENSCDRG00005012366)	CALM3 (ENSCDRG00005012287)	CCDC8 (ENSCDRG00005012268)	PNMA8C (ENSCDRG00005012241)	PNMA8A (ENSCDRG00005012183)	PPP5C (ENSCDRG00005011852)	HIF3A (ENSCDRG00005011604)	IGFL1 (ENSCDRG00005011529)	PGLYRP1 (ENSCDRG00005011474)	CCDC61 (ENSCDRG00005011347)	NOVA2 (ENSCDRG00005011316)	ENSCDRG00005011302 ##22	ENSCDRG00005011280	MYPOP (ENSCDRG00005011260)	IRF2BP1 (ENSCDRG00005011195)	FOXA3 (ENSCDRG00005011166)	SYMPK (ENSCDRG00005011023)	RSPH6A (ENSCDRG00005010837)	DMWD (ENSCDRG00005010785)	DMPK (ENSCDRG00005010303)	ENSCDRG00005010261	ENSCDRG00005010165	MEIOSIN (ENSCDRG00005010033)	FBXO46 (ENSCDRG00005010007)	QPCTL (ENSCDRG00005009916)	SNRPD2 (ENSCDRG00005009839)	GIPR (ENSCDRG00005009575)
Arabian camel	MODERN SPECIES	28	ITGA8 (ENSCDRG00005020385)	WAC (ENSCDRG00005020322)	BAMBI (ENSCDRG00005020307)	ENSCDRG00005020298	ENSCDRG00005020290	FAM171A1 (ENSCDRG00005020256)	NMT2 (ENSCDRG00005020240)	ENSCDRG00005020231	ACBD7 (ENSCDRG00005020224)	MEIG1 (ENSCDRG00005020218)	DCLRE1C (ENSCDRG00005020189)	SUV39H2 (ENSCDRG00005020162)	HSPA14 (ENSCDRG00005020133)	CDNF (ENSCDRG00005020103)	FAM107B (ENSCDRG00005020088)	ENSCDRG00005020070 ##22	ENSCDRG00005020051	MPP7 (ENSCDRG00005020016)	ENSCDRG00005019992	ODAD2 (ENSCDRG00005019858)	ENSCDRG00005019820	RAB18 (ENSCDRG00005019789)	PRPF18 (ENSCDRG00005019643)	ENSCDRG00005019629	SEPHS1 (ENSCDRG00005019598)	PHYH (ENSCDRG00005019558)	UCMA (ENSCDRG00005019510)	MCM10 (ENSCDRG00005019426)	ITGB1 (ENSCDRG00005019390)	ENSCDRG00005019381	NRP1 (ENSCDRG00005019241)
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Cetacea	ANCESTRAL SPECIES	6	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a.d	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a.d	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a.d	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B
Beluga whale	MODERN SPECIES	14	SLC1A5 (ENSDLEG00000003998)	FKRP (ENSDLEG00000004003)	STRN4 (ENSDLEG00000004005)	PRKD2 (ENSDLEG00000004024)	DACT3 (ENSDLEG00000004034)	GNG8 (ENSDLEG00000004040)	PTGIR (ENSDLEG00000004041)	CALM1 (ENSDLEG00000004044)	CCDC8 (ENSDLEG00000004049)	PNMA8C (ENSDLEG00000004056)	PNMA8A (ENSDLEG00000004062)	PPP5C (ENSDLEG00000004066)	HIF3A (ENSDLEG00000004077)	CCDC61 (ENSDLEG00000004090)	NOVA2 (ENSDLEG00000004096)	NANOS2 (ENSDLEG00000004101) ##22	ENSDLEG00000004104	MYPOP (ENSDLEG00000004110)	IRF2BP1 (ENSDLEG00000004112)	FOXA3 (ENSDLEG00000004115)	SYMPK (ENSDLEG00000004122)	RSPH6A (ENSDLEG00000004133)	DMWD (ENSDLEG00000000077)	DMPK (ENSDLEG00000000090)	SIX5 (ENSDLEG00000000119)	FBXO46 (ENSDLEG00000000130)	QPCTL (ENSDLEG00000000148)	SNRPD2 (ENSDLEG00000000188)	GIPR (ENSDLEG00000000221)	EML2 (ENSDLEG00000000275)	OPA3 (ENSDLEG00000000472)
Narwhal	MODERN SPECIES	296	SLC1A5 (ENSMMNG00015000079)	FKRP (ENSMMNG00015000038)	STRN4 (ENSMMNG00015008395)	PRKD2 (ENSMMNG00015008344)	DACT3 (ENSMMNG00015008322)	GNG8 (ENSMMNG00015008308)	PTGIR (ENSMMNG00015008294)	CALM3 (ENSMMNG00015008255)	CCDC8 (ENSMMNG00015008209)	PNMA8C (ENSMMNG00015008203)	ENSMMNG00015008192	PPP5C (ENSMMNG00015008098)	HIF3A (ENSMMNG00015007921)	CCDC61 (ENSMMNG00015007871)	NOVA2 (ENSMMNG00015007847)	NANOS2 (ENSMMNG00015007835) ##22	ENSMMNG00015007819	MYPOP (ENSMMNG00015007811)	IRF2BP1 (ENSMMNG00015007799)	FOXA3 (ENSMMNG00015007790)	SYMPK (ENSMMNG00015007752)	RSPH6A (ENSMMNG00015007710)	DMWD (ENSMMNG00015007676)	DMPK (ENSMMNG00015007633)	SIX5 (ENSMMNG00015007599)	MEIOSIN (ENSMMNG00015007567)	FBXO46 (ENSMMNG00015007550)	QPCTL (ENSMMNG00015007522)	ENSMMNG00015007488	GIPR (ENSMMNG00015007342)	EML2 (ENSMMNG00015007133)
Vaquita	MODERN SPECIES	10	FKRP (ENSPSNG00000021515)	STRN4 (ENSPSNG00000021546)	PRKD2 (ENSPSNG00000021606)	DACT3 (ENSPSNG00000021641)	GNG8 (ENSPSNG00000021667)	PTGIR (ENSPSNG00000021685)	CALM3 (ENSPSNG00000005927)	ENSPSNG00000005987	CCDC8 (ENSPSNG00000006015)	PNMA8C (ENSPSNG00000006027)	PNMA8A (ENSPSNG00000006045)	PPP5C (ENSPSNG00000006084)	HIF3A (ENSPSNG00000006147)	CCDC61 (ENSPSNG00000006217)	NOVA2 (ENSPSNG00000006243)	NANOS2 (ENSPSNG00000006285) ##22	MYPOP (ENSPSNG00000006305)	ENSPSNG00000006334	IRF2BP1 (ENSPSNG00000006350)	FOXA3 (ENSPSNG00000006380)	SYMPK (ENSPSNG00000006567)	ENSPSNG00000006688	DMWD (ENSPSNG00000006737)	SIX5 (ENSPSNG00000006825)	FBXO46 (ENSPSNG00000006942)	QPCTL (ENSPSNG00000006987)	ENSPSNG00000007055	GIPR (ENSPSNG00000007181)	EML2 (ENSPSNG00000007601)	GPR4 (ENSPSNG00000007964)	OPA3 (ENSPSNG00000007984)
Dolphin	MODERN SPECIES	2108																NANOS2 (ENSTTRG00000014315) ##22	MYPOP (ENSTTRG00000014314)	IRF2BP1 (ENSTTRG00000014313)	FOXA3 (ENSTTRG00000014312)	SYMPK (ENSTTRG00000014311)	RSPH6A (ENSTTRG00000014308)	DMWD (ENSTTRG00000014307)	DMPK (ENSTTRG00000014304)	SIX5 (ENSTTRG00000014303)	QPCTL (ENSTTRG00000014300)	SNRPD2 (ENSTTRG00000014299)	GIPR (ENSTTRG00000014291)	EML2 (ENSTTRG00000014285)	GPR4 (ENSTTRG00000014282)
Sperm whale	MODERN SPECIES	24																NANOS2 (ENSPCTG00005022323) ##22	MYPOP (ENSPCTG00005022327)	IRF2BP1 (ENSPCTG00005022328)	FOXA3 (ENSPCTG00005022331)	SYMPK (ENSPCTG00005012494)	RSPH6A (ENSPCTG00005012600)	DMWD (ENSPCTG00005012784)	DMPK (ENSPCTG00005012889)	SIX5 (ENSPCTG00005013002)	MEIOSIN (ENSPCTG00005013085)	FBXO46 (ENSPCTG00005013309)	QPCTL (ENSPCTG00005013345)	SNRPD2 (ENSPCTG00005013438)	GIPR (ENSPCTG00005013545)	EML2 (ENSPCTG00005014306)	OPA3 (ENSPCTG00005014977)
Blue whale	MODERN SPECIES	10	FKRP (ENSBMSG00010020816)	STRN4 (ENSBMSG00010020831)	PRKD2 (ENSBMSG00010020856)	DACT3 (ENSBMSG00010020888)	GNG8 (ENSBMSG00010020908)	PTGIR (ENSBMSG00010020919)	CALM3 (ENSBMSG00010020940)	CCDC8 (ENSBMSG00010020979)	PNMA8A (ENSBMSG00010020996)	PPP5C (ENSBMSG00010021017)	HIF3A (ENSBMSG00010021058)	IGFL1 (ENSBMSG00010021137)	PGLYRP1 (ENSBMSG00010021143)	CCDC61 (ENSBMSG00010021160)	NOVA2 (ENSBMSG00010021172)	NANOS2 (ENSBMSG00010014044) ##22	MYPOP (ENSBMSG00010014070)	ENSBMSG00010014093	IRF2BP1 (ENSBMSG00010014111)	FOXA3 (ENSBMSG00010014125)	SYMPK (ENSBMSG00010014199)	ENSBMSG00010014352	DMWD (ENSBMSG00010014405)	DMPK (ENSBMSG00010014458)	SIX5 (ENSBMSG00010014523)	MEIOSIN (ENSBMSG00010014548)	FBXO46 (ENSBMSG00010014606)	QPCTL (ENSBMSG00010014644)	SNRPD2 (ENSBMSG00010014687)	GIPR (ENSBMSG00010014763)	EML2 (ENSBMSG00010015025)
Pecora	ANCESTRAL SPECIES	4	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Percora_a	ANCESTRAL SPECIES	4	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Bovidae	ANCESTRAL SPECIES	4	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Goat	MODERN SPECIES	9	FKRP (ENSCHIG00000005654)	STRN4 (ENSCHIG00000019269)	PRKD2 (ENSCHIG00000021220)	DACT3 (ENSCHIG00000021818)	GNG8 (ENSCHIG00000018099)	PTGIR (ENSCHIG00000016612)	CALM3 (ENSCHIG00000011296)	CCDC8 (ENSCHIG00000010061)	ENSCHIG00000026916	PPP5C (ENSCHIG00000024557)	HIF3A (ENSCHIG00000018939)	IGFL1 (ENSCHIG00000023173)	PGLYRP1 (ENSCHIG00000013020)	CCDC61 (ENSCHIG00000024140)	NOVA2 (ENSCHIG00000010547)	NANOS2 (ENSCHIG00000012637) ##22	MYPOP (ENSCHIG00000019016)	IRF2BP1 (ENSCHIG00000002525)	FOXA3 (ENSCHIG00000011232)	SYMPK (ENSCHIG00000026784)	RSPH6A (ENSCHIG00000012473)	DMWD (ENSCHIG00000023485)	DMPK (ENSCHIG00000015894)	SIX5 (ENSCHIG00000022800)	FBXO46 (ENSCHIG00000008535)	QPCTL (ENSCHIG00000027222)	ENSCHIG00000015755	GIPR (ENSCHIG00000020718)	EML2 (ENSCHIG00000013582)	GPR4 (ENSCHIG00000005655)	ENSCHIG00000010098
Rambouillet Sheep	MODERN SPECIES	5	SLC1A5 (ENSOARG00020010548)	FKRP (ENSOARG00020010516)	STRN4 (ENSOARG00020009995)	PRKD2 (ENSOARG00020015155)	DACT3 (ENSOARG00020015009)	GNG8 (ENSOARG00020014962)	PTGIR (ENSOARG00020014841)	CALM2 (ENSOARG00020014681)	CCDC8 (ENSOARG00020014656)	PPP5C (ENSOARG00020014431)	HIF3A (ENSOARG00020013117)	IGFL1 (ENSOARG00020012997)	PGLYRP1 (ENSOARG00020012949)	CCDC61 (ENSOARG00020012803)	NOVA2 (ENSOARG00020012718)	NANOS2 (ENSOARG00020012700) ##22	ENSOARG00020012685	MYPOP (ENSOARG00020012637)	FOXA3 (ENSOARG00020012489)	SYMPK (ENSOARG00020012293)	RSPH6A (ENSOARG00020012229)	DMWD (ENSOARG00020012078)	DMPK (ENSOARG00020011948)	SIX5 (ENSOARG00020011904)	FBXO46 (ENSOARG00020011686)	QPCTL (ENSOARG00020011576)	SNRPD2 (ENSOARG00020011522)	GIPR (ENSOARG00020010483)	EML2 (ENSOARG00020009160)	GPR4 (ENSOARG00020009088)	OPA3 (ENSOARG00020009064)
Bovinae	ANCESTRAL SPECIES	3	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000157251.kb.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120.i	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Bos	ANCESTRAL SPECIES	4	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000157251.kb.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120.i	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Bos_a	ANCESTRAL SPECIES	16	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120.i	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Wild yak	MODERN SPECIES	614								ENSBMUG00000019306	PNMA8A (ENSBMUG00000019297)	PPP5C (ENSBMUG00000019277)	HIF3A (ENSBMUG00000019190)	IGFL1 (ENSBMUG00000019131)	PGLYRP1 (ENSBMUG00000019121)	CCDC61 (ENSBMUG00000019103)	NOVA2 (ENSBMUG00000019059)	NANOS2 (ENSBMUG00000019043) ##22	ENSBMUG00000019038	FOXA3 (ENSBMUG00000019029)	SYMPK (ENSBMUG00000019001)	RSPH6A (ENSBMUG00000018959)	ENSBMUG00000018916	DMPK (ENSBMUG00000018900)
Domestic yak	MODERN SPECIES	12	FKRP (ENSBGRG00000017133)	STRN4 (ENSBGRG00000017163)	PRKD2 (ENSBGRG00000017664)	DACT3 (ENSBGRG00000017786)	GNG8 (ENSBGRG00000017906)	PTGIR (ENSBGRG00000017949)	CALM3 (ENSBGRG00000018002)	CCDC8 (ENSBGRG00000018249)	PNMA8A (ENSBGRG00000018367)	PPP5C (ENSBGRG00000018431)	HIF3A (ENSBGRG00000018647)	IGFL1 (ENSBGRG00000019136)	PGLYRP1 (ENSBGRG00000019198)	CCDC61 (ENSBGRG00000019266)	NOVA2 (ENSBGRG00000019401)	NANOS2 (ENSBGRG00000019460) ##22	MYPOP (ENSBGRG00000019478)	IRF2BP1 (ENSBGRG00000019522)	FOXA3 (ENSBGRG00000019533)	SYMPK (ENSBGRG00000019603)	RSPH6A (ENSBGRG00000019805)	DMWD (ENSBGRG00000019948)	SIX5 (ENSBGRG00000020815)	MEIOSIN (ENSBGRG00000020860)	FBXO46 (ENSBGRG00000020994)	QPCTL (ENSBGRG00000021008)	SNRPD2 (ENSBGRG00000021083)	GIPR (ENSBGRG00000021139)	EML2 (ENSBGRG00000021380)	GPR4 (ENSBGRG00000021757)	OPA3 (ENSBGRG00000021767)
Bos_b	ANCESTRAL SPECIES		ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000157251.kb.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120.i	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Cow	MODERN SPECIES	9	PRKD2 (ENSBTAG00000015599)	ENSBTAG00000052862	DACT3 (ENSBTAG00000030705)	GNG8 (ENSBTAG00000017762)	PTGIR (ENSBTAG00000014585)	CALM3 (ENSBTAG00000014583)	CCDC8 (ENSBTAG00000018181)	PNMA8A (ENSBTAG00000009337)	PPP5C (ENSBTAG00000008014)	HIF3A (ENSBTAG00000018948)	IGFL1 (ENSBTAG00000000027)	ENSBTAG00000023367	PGLYRP1 (ENSBTAG00000002635)	CCDC61 (ENSBTAG00000005819)	NOVA2 (ENSBTAG00000013157)	NANOS2 (ENSBTAG00000047505) ##22	ENSBTAG00000054722	MYPOP (ENSBTAG00000045708)	ENSBTAG00000050077	FOXA3 (ENSBTAG00000012104)	SYMPK (ENSBTAG00000012101)	RSPH6A (ENSBTAG00000012097)	DMWD (ENSBTAG00000021417)	DMPK (ENSBTAG00000013347)	SIX5 (ENSBTAG00000013346)	FBXO46 (ENSBTAG00000048966)	QPCTL (ENSBTAG00000012176)	SNRPD2 (ENSBTAG00000012177)	GIPR (ENSBTAG00000005527)	EML2 (ENSBTAG00000015764)	GPR4 (ENSBTAG00000018398)
Hybrid Bos Indicus	MODERN SPECIES	9	STRN4 (ENSBIXG00005024484)	PRKD2 (ENSBIXG00005024335)	DACT3 (ENSBIXG00005024273)	GNG8 (ENSBIXG00005004139)	PTGIR (ENSBIXG00005024224)	CALM3 (ENSBIXG00005024193)	CCDC8 (ENSBIXG00005024071)	PNMA8A (ENSBIXG00005023944)	PPP5C (ENSBIXG00005023931)	HIF3A (ENSBIXG00005023842)	IGFL1 (ENSBIXG00005023661)	ENSBIXG00005023638	PGLYRP1 (ENSBIXG00005023625)	CCDC61 (ENSBIXG00005004038)	NOVA2 (ENSBIXG00005023501)	NANOS2 (ENSBIXG00005023479) ##22	MYPOP (ENSBIXG00005023469)	ENSBIXG00005023453	FOXA3 (ENSBIXG00005023439)	SYMPK (ENSBIXG00005023428)	RSPH6A (ENSBIXG00005023393)	DMWD (ENSBIXG00005023338)	DMPK (ENSBIXG00005003978)	SIX5 (ENSBIXG00005023223)	MEIOSIN (ENSBIXG00005023205)	FBXO46 (ENSBIXG00005003957)	QPCTL (ENSBIXG00005003947)	SNRPD2 (ENSBIXG00005006167)	GIPR (ENSBIXG00005023073)	EML2 (ENSBIXG00005022960)	ENSBIXG00005022571
American bison	MODERN SPECIES	3227	STRN4 (ENSBBBG00000007553)	PRKD2 (ENSBBBG00000007407)	ENSBBBG00000014572	GNG8 (ENSBBBG00000007169)	PTGIR (ENSBBBG00000014585)	CALM3 (ENSBBBG00000014637)	CCDC8 (ENSBBBG00000007256)	PNMA8A (ENSBBBG00000014698)	PPP5C (ENSBBBG00000014726)	HIF3A (ENSBBBG00000014756)	IGFL1 (ENSBBBG00000014765)	ENSBBBG00000009057	PGLYRP1 (ENSBBBG00000006949)	CCDC61 (ENSBBBG00000002834)	NOVA2 (ENSBBBG00000014819)	NANOS2 (ENSBBBG00000014825) ##22	IRF2BP1 (ENSBBBG00000014836)	FOXA3 (ENSBBBG00000014845)	SYMPK (ENSBBBG00000014863)	RSPH6A (ENSBBBG00000003680)	DMWD (ENSBBBG00000001216)	DMPK (ENSBBBG00000001064)	ENSBBBG00000001050	MEIOSIN (ENSBBBG00000001018)	FBXO46 (ENSBBBG00000001009)	QPCTL (ENSBBBG00000000961)	SNRPD2 (ENSBBBG00000000935)	GIPR (ENSBBBG00000000834)	EML2 (ENSBBBG00000014978)	GPR4 (ENSBBBG00000003575)	OPA3 (ENSBBBG00000003720)
Siberian musk deer	MODERN SPECIES	124	STRN4 (ENSMMSG00000001918)	PRKD2 (ENSMMSG00000002012)	DACT3 (ENSMMSG00000002045)	GNG8 (ENSMMSG00000002075)	PTGIR (ENSMMSG00000002087)	CALM3 (ENSMMSG00000002115)	ENSMMSG00000002162	ENSMMSG00000002170	PPP5C (ENSMMSG00000002194)	HIF3A (ENSMMSG00000002239)	ENSMMSG00000002309	IGFL1 (ENSMMSG00000002324)	PGLYRP1 (ENSMMSG00000002338)	CCDC61 (ENSMMSG00000002366)	NOVA2 (ENSMMSG00000002415)	NANOS2 (ENSMMSG00000002428) ##22	ENSMMSG00000002435	MYPOP (ENSMMSG00000002452)	IRF2BP1 (ENSMMSG00000002468)	FOXA3 (ENSMMSG00000002476)	SYMPK (ENSMMSG00000002514)	RSPH6A (ENSMMSG00000002561)	DMWD (ENSMMSG00000002577)	DMPK (ENSMMSG00000002626)	SIX5 (ENSMMSG00000002869)	FBXO46 (ENSMMSG00000002912)	QPCTL (ENSMMSG00000002929)	ENSMMSG00000002952	GIPR (ENSMMSG00000002994)	EML2 (ENSMMSG00000003108)	GPR4 (ENSMMSG00000003234)
Yarkand deer	MODERN SPECIES	27	PRKD2 (ENSCHYG00000015014)	ENSCHYG00000014954	ENSCHYG00000014899	GNG8 (ENSCHYG00000014847)	PTGIR (ENSCHYG00000014757)	CALM3 (ENSCHYG00000014426)	CCDC8 (ENSCHYG00000014352)	ENSCHYG00000014216	PNMA8A (ENSCHYG00000014197)	PPP5C (ENSCHYG00000013920)	HIF3A (ENSCHYG00000013457)	ENSCHYG00000013392	PGLYRP1 (ENSCHYG00000013331)	ENSCHYG00000013047	NOVA2 (ENSCHYG00000013004)	NANOS2 (ENSCHYG00000012987) ##22	MYPOP (ENSCHYG00000012965)	IRF2BP1 (ENSCHYG00000012957)	FOXA3 (ENSCHYG00000012937)	SYMPK (ENSCHYG00000012597)	RSPH6A (ENSCHYG00000012525)	DMWD (ENSCHYG00000012422)	DMPK (ENSCHYG00000011768)	SIX5 (ENSCHYG00000011699)	MEIOSIN (ENSCHYG00000011599)	FBXO46 (ENSCHYG00000011575)	QPCTL (ENSCHYG00000011523)	SNRPD2 (ENSCHYG00000011477)	GIPR (ENSCHYG00000011385)	EML2 (ENSCHYG00000010342)	GPR4 (ENSCHYG00000010273)
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Equus	ANCESTRAL SPECIES	1	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006.h	ENSGT00390000009557.C.j	ENSGT00390000009557.C.i.a	ENSGT01100000263517.b.d.m.a.a.a.b	ENSGT00390000009557.C.i.b	ENSGT00940000161006.g	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Horse	MODERN SPECIES	1	ENSECAG00000060028	PNMA8A (ENSECAG00000006115)	PNMA8C (ENSECAG00000034552)	CCDC8 (ENSECAG00000056835)	PPP5C (ENSECAG00000056298)	HIF3A (ENSECAG00000020693)	ENSECAG00000012503	ENSECAG00000016992	ENSECAG00000012514	ENSECAG00000029300	ENSECAG00000039739	ENSECAG00000032321	CCDC61 (ENSECAG00000009015)	NOVA2 (ENSECAG00000024041)	ENSECAG00000054420	NANOS2 (ENSECAG00000006033) ##22	IRF2BP1 (ENSECAG00000005987)	FOXA3 (ENSECAG00000005936)	SYMPK (ENSECAG00000008163)	RSPH6A (ENSECAG00000019005)	DMPK (ENSECAG00000016750)	MEIOSIN (ENSECAG00000036481)	FBXO46 (ENSECAG00000032958)	QPCTL (ENSECAG00000009265)	SNRPD2 (ENSECAG00000007824)	GIPR (ENSECAG00000015923)	EML2 (ENSECAG00000018032)	GPR4 (ENSECAG00000045714)	OPA3 (ENSECAG00000014284)	VASP (ENSECAG00000007818)	PPM1N (ENSECAG00000005419)
Donkey	MODERN SPECIES	18	ENSEASG00005004013	CALM3 (ENSEASG00005004012)	ENSEASG00005036842	ENSEASG00005024649	CCDC8 (ENSEASG00005031475)	PNMA8C (ENSEASG00005004006)	PPP5C (ENSEASG00005003995)	HIF3A (ENSEASG00005003993)	ENSEASG00005029977	ENSEASG00005032964	ENSEASG00005003990	ENSEASG00005003991	ENSEASG00005025557	CCDC61 (ENSEASG00005027854)	NOVA2 (ENSEASG00005038406)	NANOS2 (ENSEASG00005014235) ##22	ENSEASG00005014234	MYPOP (ENSEASG00005028554)	IRF2BP1 (ENSEASG00005014232)	FOXA3 (ENSEASG00005037896)	SYMPK (ENSEASG00005014227)	RSPH6A (ENSEASG00005014225)	DMWD (ENSEASG00005014223)	DMPK (ENSEASG00005014220)	SIX5 (ENSEASG00005014218)	MEIOSIN (ENSEASG00005014215)	FBXO46 (ENSEASG00005029424)	QPCTL (ENSEASG00005014212)	ENSEASG00005014210	GIPR (ENSEASG00005014208)	EML2 (ENSEASG00005014204)
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Greater horseshoe bat	MODERN SPECIES	6	DACT3 (ENSRFEG00010011826)	ENSRFEG00010011776	PTGIR (ENSRFEG00010011682)	CALM3 (ENSRFEG00010011490)	PNMA8B (ENSRFEG00010011467)	PNMA8C (ENSRFEG00010011452)	PPP5C (ENSRFEG00010011335)	HIF3A (ENSRFEG00010010703)	IGFL1 (ENSRFEG00010010615)	ENSRFEG00010010556	ENSRFEG00010010514	IGFL4 (ENSRFEG00010010411)	PGLYRP1 (ENSRFEG00010010376)	CCDC61 (ENSRFEG00010010279)	NOVA2 (ENSRFEG00010010242)	NANOS2 (ENSRFEG00010010225) ##22	ENSRFEG00010010211	MYPOP (ENSRFEG00010010173)	IRF2BP1 (ENSRFEG00010010157)	FOXA3 (ENSRFEG00010010122)	SYMPK (ENSRFEG00010010076)	RSPH6A (ENSRFEG00010009900)	DMWD (ENSRFEG00010009798)	DMPK (ENSRFEG00010009224)	SIX5 (ENSRFEG00010009093)	MEIOSIN (ENSRFEG00010009004)	QPCTL (ENSRFEG00010008930)	ENSRFEG00010008870	GIPR (ENSRFEG00010008371)	EML2 (ENSRFEG00010007875)	GPR4 (ENSRFEG00010007847)
Megabat	MODERN SPECIES	470																NANOS2 (ENSPVAG00000001363) ##22	MYPOP (ENSPVAG00000001362)	IRF2BP1 (ENSPVAG00000001361)	FOXA3 (ENSPVAG00000001359)	SYMPK (ENSPVAG00000001355)	RSPH6A (ENSPVAG00000001354)	DMWD (ENSPVAG00000001352)	DMPK (ENSPVAG00000001349)	SIX5 (ENSPVAG00000001347)	QPCTL (ENSPVAG00000001346)	SNRPD2 (ENSPVAG00000001345)	GIPR (ENSPVAG00000001343)	EML2 (ENSPVAG00000001340)	GPR4 (ENSPVAG00000001339)	OPA3 (ENSPVAG00000001338)	VASP (ENSPVAG00000001336)
Carnivora	ANCESTRAL SPECIES	2	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Caniformia	ANCESTRAL SPECIES	1	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Ursidae	ANCESTRAL SPECIES	30	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000164310.e	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Ursus	ANCESTRAL SPECIES	13	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000164310.e	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
American black bear	MODERN SPECIES	654																NANOS2 (ENSUAMG00000023170) ##22	ENSUAMG00000023169	IRF2BP1 (ENSUAMG00000023168)	FOXA3 (ENSUAMG00000023167)	SYMPK (ENSUAMG00000022272)	RSPH6A (ENSUAMG00000022261)	ENSUAMG00000022260	DMPK (ENSUAMG00000022218)	SIX5 (ENSUAMG00000022217)	MEIOSIN (ENSUAMG00000022216)
Polar bear	MODERN SPECIES	115	STRN4 (ENSUMAG00000023724)	PRKD2 (ENSUMAG00000023719)	GNG8 (ENSUMAG00000023717)	ENSUMAG00000023716	ENSUMAG00000023715	CCDC8 (ENSUMAG00000023713)	PNMA8C (ENSUMAG00000023712)	PNMA8A (ENSUMAG00000023711)	PPP5C (ENSUMAG00000023710)	HIF3A (ENSUMAG00000023708)	ENSUMAG00000023707	ENSUMAG00000023706	ENSUMAG00000023704	PGLYRP1 (ENSUMAG00000023702)	CCDC61 (ENSUMAG00000023701)	NANOS2 (ENSUMAG00000023699) ##22	SYMPK (ENSUMAG00000023698)	RSPH6A (ENSUMAG00000023697)	DMPK (ENSUMAG00000023693)	ENSUMAG00000023690	QPCTL (ENSUMAG00000023687)	SNRPD2 (ENSUMAG00000023685)	GIPR (ENSUMAG00000023684)	EML2 (ENSUMAG00000023616)	GPR4 (ENSUMAG00000023598)	OPA3 (ENSUMAG00000023597)	ENSUMAG00000023595	VASP (ENSUMAG00000023593)	ENSUMAG00000023592	RTN2 (ENSUMAG00000023591)	FOSB (ENSUMAG00000023589)
Giant Panda	MODERN SPECIES	3	SLC1A5 (ENSAMEG00000008407)	STRN4 (ENSAMEG00000008435)	PRKD2 (ENSAMEG00000008498)	ENSAMEG00000026303	GNG8 (ENSAMEG00000008557)	ENSAMEG00000008560	ENSAMEG00000029734	ENSAMEG00000024569	ENSAMEG00000024067	ENSAMEG00000029960	ENSAMEG00000008577	HIF3A (ENSAMEG00000008615)	ENSAMEG00000008655	PGLYRP1 (ENSAMEG00000000626)	CCDC61 (ENSAMEG00000000629)	NANOS2 (ENSAMEG00000000660) ##22	ENSAMEG00000027611	MYPOP (ENSAMEG00000025217)	IRF2BP1 (ENSAMEG00000029242)	FOXA3 (ENSAMEG00000031395)	SYMPK (ENSAMEG00000000680)	DMWD (ENSAMEG00000026871)	DMPK (ENSAMEG00000000775)	SIX5 (ENSAMEG00000025878)	ENSAMEG00000027887	FBXO46 (ENSAMEG00000025250)	QPCTL (ENSAMEG00000000797)	ENSAMEG00000000818	GIPR (ENSAMEG00000000819)	EML2 (ENSAMEG00000000872)	GPR4 (ENSAMEG00000030728)
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Ferret	MODERN SPECIES	291	FKRP (ENSMPUG00000019369)	STRN4 (ENSMPUG00000005157)	PRKD2 (ENSMPUG00000005234)	ENSMPUG00000005246	GNG8 (ENSMPUG00000005250)	PTGIR (ENSMPUG00000005257)	CALM3 (ENSMPUG00000005261)	CCDC8 (ENSMPUG00000019370)	PNMA8A (ENSMPUG00000005271)	PPP5C (ENSMPUG00000005275)	HIF3A (ENSMPUG00000005285)	ENSMPUG00000005385	PGLYRP1 (ENSMPUG00000005395)	CCDC61 (ENSMPUG00000005428)	NOVA2 (ENSMPUG00000005444)	NANOS2 (ENSMPUG00000019371) ##22	MYPOP (ENSMPUG00000005494)	IRF2BP1 (ENSMPUG00000019372)	FOXA3 (ENSMPUG00000005501)	SYMPK (ENSMPUG00000005505)	RSPH6A (ENSMPUG00000005534)	DMWD (ENSMPUG00000005593)	DMPK (ENSMPUG00000005629)	SIX5 (ENSMPUG00000005715)	MEIOSIN (ENSMPUG00000005720)	FBXO46 (ENSMPUG00000019374)	QPCTL (ENSMPUG00000005727)	SNRPD2 (ENSMPUG00000005733)	GIPR (ENSMPUG00000005756)	EML2 (ENSMPUG00000005855)	OPA3 (ENSMPUG00000005872)
American mink	MODERN SPECIES	135	ENSNVIG00000009748	ENSNVIG00000009739	PTGIR (ENSNVIG00000009732)	CALM3 (ENSNVIG00000009664)	ENSNVIG00000009652	CCDC8 (ENSNVIG00000009649)	C9JTH8 (ENSNVIG00000009647)	PNMA8A (ENSNVIG00000009641)	PPP5C (ENSNVIG00000009605)	HIF3A (ENSNVIG00000009557)	ENSNVIG00000009514	ENSNVIG00000009504	PGLYRP1 (ENSNVIG00000009479)	CCDC61 (ENSNVIG00000009441)	NOVA2 (ENSNVIG00000009425)	NANOS2 (ENSNVIG00000009419) ##22	ENSNVIG00000009418	MYPOP (ENSNVIG00000009413)	IRF2BP1 (ENSNVIG00000009402)	FOXA3 (ENSNVIG00000009388)	SYMPK (ENSNVIG00000009342)	RSPH6A (ENSNVIG00000009330)	DMWD (ENSNVIG00000009289)	DMPK (ENSNVIG00000009169)	SIX5 (ENSNVIG00000009150)	MEIOSIN (ENSNVIG00000009144)	FBXO46 (ENSNVIG00000009137)	QPCTL (ENSNVIG00000009114)	SNRPD2 (ENSNVIG00000009077)	GIPR (ENSNVIG00000009001)	EML2 (ENSNVIG00000008942)
Canidae	ANCESTRAL SPECIES	5	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Canis_lupus	ANCESTRAL SPECIES		ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Dingo	MODERN SPECIES	125	PRKD2 (ENSCAFG00020001585)	DACT3 (ENSCAFG00020001607)	GNG8 (ENSCAFG00020001623)	PTGIR (ENSCAFG00020001637)	ENSCAFG00020001643	CCDC8 (ENSCAFG00020001658)	PNMA8C (ENSCAFG00020001664)	PNMA8A (ENSCAFG00020001670)	PPP5C (ENSCAFG00020001676)	HIF3A (ENSCAFG00020001684)	ENSCAFG00020001697	ENSCAFG00020001734	PGLYRP1 (ENSCAFG00020001739)	CCDC61 (ENSCAFG00020001761)	NOVA2 (ENSCAFG00020001763)	NANOS2 (ENSCAFG00020001772) ##22	ENSCAFG00020001778	MYPOP (ENSCAFG00020001794)	IRF2BP1 (ENSCAFG00020001798)	FOXA3 (ENSCAFG00020001802)	SYMPK (ENSCAFG00020001815)	RSPH6A (ENSCAFG00020001834)	DMWD (ENSCAFG00020001886)	DMPK (ENSCAFG00020002021)	SIX5 (ENSCAFG00020003514)	MEIOSIN (ENSCAFG00020003516)	FBXO46 (ENSCAFG00020003524)	QPCTL (ENSCAFG00020003527)	ENSCAFG00020003532	GIPR (ENSCAFG00020003543)	EML2 (ENSCAFG00020003779)
Dog	MODERN SPECIES		PRKD2 (ENSCAFG00845003382)	ENSCAFG00845003424	DACT3 (ENSCAFG00845003449)	GNG8 (ENSCAFG00845003458)	ENSCAFG00845004281	ENSCAFG00845004289	ENSCAFG00845004294	ENSCAFG00845004299	ENSCAFG00845004375	HIF3A (ENSCAFG00845004467)	ENSCAFG00845004529	ENSCAFG00845004536	PGLYRP1 (ENSCAFG00845004551)	CCDC61 (ENSCAFG00845004579)	NOVA2 (ENSCAFG00845004618)	NANOS2 (ENSCAFG00845004625) ##22	IRF2BP1 (ENSCAFG00845004633)	FOXA3 (ENSCAFG00845004638)	SYMPK (ENSCAFG00845004681)	DMWD (ENSCAFG00845004767)	DMPK (ENSCAFG00845004793)	SIX5 (ENSCAFG00845004815)	MEIOSIN (ENSCAFG00845004838)	FBXO46 (ENSCAFG00845004849)	QPCTL (ENSCAFG00845004866)	GIPR (ENSCAFG00845004894)	EML2 (ENSCAFG00845004953)	GPR4 (ENSCAFG00845005035)	OPA3 (ENSCAFG00845005041)	VASP (ENSCAFG00845005094)	PPM1N (ENSCAFG00845005133)
Red fox	MODERN SPECIES	101	STRN4 (ENSVVUG00000000583)	PRKD2 (ENSVVUG00000002735)	ENSVVUG00000002753	GNG8 (ENSVVUG00000002757)	PTGIR (ENSVVUG00000002758)	CALM1 (ENSVVUG00000002762)	CCDC8 (ENSVVUG00000002765)	PNMA8C (ENSVVUG00000002766)	PNMA8A (ENSVVUG00000002767)	PPP5C (ENSVVUG00000002773)	HIF3A (ENSVVUG00000002779)	ENSVVUG00000002866	PGLYRP1 (ENSVVUG00000002874)	CCDC61 (ENSVVUG00000002894)	ENSVVUG00000002971	NANOS2 (ENSVVUG00000002993) ##22	ENSVVUG00000002998	MYPOP (ENSVVUG00000003001)	IRF2BP1 (ENSVVUG00000003011)	FOXA3 (ENSVVUG00000003017)	SYMPK (ENSVVUG00000003024)	RSPH6A (ENSVVUG00000003045)	DMWD (ENSVVUG00000003082)	DMPK (ENSVVUG00000003094)	SIX5 (ENSVVUG00000003131)	MEIOSIN (ENSVVUG00000003147)	FBXO46 (ENSVVUG00000003160)	QPCTL (ENSVVUG00000003169)	ENSVVUG00000003181	GIPR (ENSVVUG00000003197)	EML2 (ENSVVUG00000003317)
Felidae	ANCESTRAL SPECIES	7	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Panthera	ANCESTRAL SPECIES	20	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Tiger	MODERN SPECIES	494										PPP5C (ENSPTIG00000015154)	HIF3A (ENSPTIG00000015179)	ENSPTIG00000015297	ENSPTIG00000015313	CCDC61 (ENSPTIG00000015320)	NOVA2 (ENSPTIG00000015368)	NANOS2 (ENSPTIG00000015372) ##22	ENSPTIG00000007993	SYMPK (ENSPTIG00000015420)	RSPH6A (ENSPTIG00000015641)	DMPK (ENSPTIG00000015873)	ENSPTIG00000016086	MEIOSIN (ENSPTIG00000016102)
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.a.b	ENSGT00390000009557.B.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
lion	MODERN SPECIES	15	STRN4 (ENSPLOG00000006025)	PRKD2 (ENSPLOG00000005850)	DACT3 (ENSPLOG00000005799)	GNG8 (ENSPLOG00000005773)	PTGIR (ENSPLOG00000005755)	CALM3 (ENSPLOG00000005689)	PNMA8C (ENSPLOG00000005649)	PNMA8A (ENSPLOG00000005626)	PPP5C (ENSPLOG00000005583)	HIF3A (ENSPLOG00000005534)	ENSPLOG00000005466	ENSPLOG00000021927	PGLYRP1 (ENSPLOG00000021909)	CCDC61 (ENSPLOG00000021860)	NOVA2 (ENSPLOG00000021834)	NANOS2 (ENSPLOG00000021823) ##22	MYPOP (ENSPLOG00000021806)	IRF2BP1 (ENSPLOG00000021798)	FOXA3 (ENSPLOG00000021787)	SYMPK (ENSPLOG00000021677)	RSPH6A (ENSPLOG00000021574)	DMWD (ENSPLOG00000021521)	DMPK (ENSPLOG00000021360)	ENSPLOG00000021304	FBXO46 (ENSPLOG00000021240)	QPCTL (ENSPLOG00000021202)	SNRPD2 (ENSPLOG00000021167)	GIPR (ENSPLOG00000020929)	EML2 (ENSPLOG00000020666)	GPR4 (ENSPLOG00000020587)	OPA3 (ENSPLOG00000020572)
leopard	MODERN SPECIES	103	PRKD2 (ENSPPRG00000014664)	DACT3 (ENSPPRG00000015373)	GNG8 (ENSPPRG00000013229)	PTGIR (ENSPPRG00000013057)	CALM3 (ENSPPRG00000012684)	CCDC8 (ENSPPRG00000015314)	PNMA8C (ENSPPRG00000015301)	ENSPPRG00000010075	PPP5C (ENSPPRG00000009086)	HIF3A (ENSPPRG00000008307)	ENSPPRG00000006901	ENSPPRG00000006656	PGLYRP1 (ENSPPRG00000006608)	CCDC61 (ENSPPRG00000006512)	NOVA2 (ENSPPRG00000005941)	NANOS2 (ENSPPRG00000015211) ##22	ENSPPRG00000005594	MYPOP (ENSPPRG00000005447)	SYMPK (ENSPPRG00000004282)	FOXA3 (ENSPPRG00000004095)	RSPH6A (ENSPPRG00000003549)	DMWD (ENSPPRG00000003246)	DMPK (ENSPPRG00000002974)	SIX5 (ENSPPRG00000014758)	FBXO46 (ENSPPRG00000015053)	SNRPD2 (ENSPPRG00000012309)	QPCTL (ENSPPRG00000011974)	GIPR (ENSPPRG00000011461)	EML2 (ENSPPRG00000010239)	GPR4 (ENSPPRG00000015030)	OPA3 (ENSPPRG00000009051)
Cat	MODERN SPECIES	246	GNG8 (ENSFCAG00000042245)	PTGIR (ENSFCAG00000027533)	CALM3 (ENSFCAG00000004995)	ENSFCAG00000048982	CCDC8 (ENSFCAG00000042508)	ENSFCAG00000032430	PNMA8A (ENSFCAG00000042861)	PPP5C (ENSFCAG00000014185)	HIF3A (ENSFCAG00000014181)	ENSFCAG00000025239	ENSFCAG00000044207	PGLYRP1 (ENSFCAG00000028691)	ENSFCAG00000051879	CCDC61 (ENSFCAG00000009510)	NOVA2 (ENSFCAG00000024784)	NANOS2 (ENSFCAG00000027661) ##22	MYPOP (ENSFCAG00000028262)	FOXA3 (ENSFCAG00000027946)	SYMPK (ENSFCAG00000007337)	FBXO46 (ENSFCAG00000007335)	DMPK (ENSFCAG00000007334)	SIX5 (ENSFCAG00000030970)	MEIOSIN (ENSFCAG00000038247)	QPCTL (ENSFCAG00000012476)	SNRPD2 (ENSFCAG00000022530)	GIPR (ENSFCAG00000007332)	EML2 (ENSFCAG00000007330)	GPR4 (ENSFCAG00000031197)	OPA3 (ENSFCAG00000030677)	VASP (ENSFCAG00000007424)	PPM1N (ENSFCAG00000007428)
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Primates	ANCESTRAL SPECIES	15	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000170636	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B
Greater bamboo lemur	MODERN SPECIES	79														CCDC61 (ENSPSMG00000024535)	NOVA2 (ENSPSMG00000024538)	NANOS2 (ENSPSMG00000024540) ##22	ENSPSMG00000024542	IRF2BP1 (ENSPSMG00000024544)	FOXA3 (ENSPSMG00000024546)	SYMPK (ENSPSMG00000024583)	RSPH6A (ENSPSMG00000024602)	DMWD (ENSPSMG00000024609)	DMPK (ENSPSMG00000024718)	SIX5 (ENSPSMG00000024751)	MEIOSIN (ENSPSMG00000024755)	FBXO46 (ENSPSMG00000024762)	QPCTL (ENSPSMG00000024775)	ENSPSMG00000024780	GIPR (ENSPSMG00000024806)	EML2 (ENSPSMG00000024861)	GPR4 (ENSPSMG00000024886)
Bushbaby	MODERN SPECIES	267	STRN4 (ENSOGAG00000015276)	PRKD2 (ENSOGAG00000007550)	DACT3 (ENSOGAG00000030948)	GNG8 (ENSOGAG00000029514)	PTGIR (ENSOGAG00000030472)	CALM3 (ENSOGAG00000014764)	PNMA8B (ENSOGAG00000028036)	CCDC8 (ENSOGAG00000007549)	ENSOGAG00000031114	PPP5C (ENSOGAG00000015987)	HIF3A (ENSOGAG00000008187)	ENSOGAG00000032211	PGLYRP1 (ENSOGAG00000007305)	CCDC61 (ENSOGAG00000007302)	NOVA2 (ENSOGAG00000028973)	NANOS2 (ENSOGAG00000032290) ##22	MYPOP (ENSOGAG00000013500)	IRF2BP1 (ENSOGAG00000030584)	FOXA3 (ENSOGAG00000030286)	SYMPK (ENSOGAG00000013483)	RSPH6A (ENSOGAG00000013480)	DMWD (ENSOGAG00000033214)	DMPK (ENSOGAG00000013463)	SIX5 (ENSOGAG00000013460)	FBXO46 (ENSOGAG00000033472)	QPCTL (ENSOGAG00000003952)	SNRPD2 (ENSOGAG00000030128)	GIPR (ENSOGAG00000012568)	EML2 (ENSOGAG00000033974)	GPR4 (ENSOGAG00000029132)	OPA3 (ENSOGAG00000033310)
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Catarrhini	ANCESTRAL SPECIES		ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Hominidae	ANCESTRAL SPECIES		ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785.j	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785.j	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Pan	ANCESTRAL SPECIES	9	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785.j	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Chimpanzee	MODERN SPECIES	10	PPP5D1 (ENSPTRG00000039811)	ENSPTRG00000028962	PNMA8A (ENSPTRG00000011183)	PNMA8C (ENSPTRG00000048654)	CCDC8 (ENSPTRG00000011182)	PPP5C (ENSPTRG00000011181)	HIF3A (ENSPTRG00000011180)	IGFL1 (ENSPTRG00000011179)	IGFL2 (ENSPTRG00000041643)	ENSPTRG00000050670	IGFL3 (ENSPTRG00000011176)	IGFL4 (ENSPTRG00000051124)	PGLYRP1 (ENSPTRG00000011175)	CCDC61 (ENSPTRG00000039834)	NOVA2 (ENSPTRG00000011173)	NANOS2 (ENSPTRG00000011172) ##22	MYPOP (ENSPTRG00000028972)	IRF2BP1 (ENSPTRG00000011171)	FOXA3 (ENSPTRG00000011170)	SYMPK (ENSPTRG00000011169)	RSPH6A (ENSPTRG00000011168)	DMWD (ENSPTRG00000011165)	DMPK (ENSPTRG00000011166)	SIX5 (ENSPTRG00000033681)	MEIOSIN (ENSPTRG00000041781)	FBXO46 (ENSPTRG00000038848)	QPCTL (ENSPTRG00000011163)	SNRPD2 (ENSPTRG00000011162)	GIPR (ENSPTRG00000050104)	ENSPTRG00000048889	GPR4 (ENSPTRG00000051128)
Bonobo	MODERN SPECIES	10	ENSPPAG00000035628	PNMA8B (ENSPPAG00000042091)	PNMA8A (ENSPPAG00000033527)	PNMA8C (ENSPPAG00000008304)	CCDC8 (ENSPPAG00000042195)	PPP5C (ENSPPAG00000038591)	HIF3A (ENSPPAG00000042427)	ENSPPAG00000032796	IGFL2 (ENSPPAG00000029197)	ENSPPAG00000029552	IGFL3 (ENSPPAG00000022284)	IGFL4 (ENSPPAG00000040782)	PGLYRP1 (ENSPPAG00000039034)	ENSPPAG00000030915	ENSPPAG00000035049	NANOS2 (ENSPPAG00000020568) ##22	MYPOP (ENSPPAG00000017638)	FOXA3 (ENSPPAG00000042745)	SYMPK (ENSPPAG00000043204)	RSPH6A (ENSPPAG00000043932)	DMWD (ENSPPAG00000037733)	DMPK (ENSPPAG00000043247)	ENSPPAG00000037802	MEIOSIN (ENSPPAG00000042669)	FBXO46 (ENSPPAG00000022797)	QPCTL (ENSPPAG00000028397)	SNRPD2 (ENSPPAG00000038031)	GIPR (ENSPPAG00000030152)	ENSPPAG00000013251	GPR4 (ENSPPAG00000008436)	ENSPPAG00000040725
Human	MODERN SPECIES	10	PTGIR (ENSG00000160013)	CALM3 (ENSG00000160014)	PNMA8B (ENSG00000204851)	PNMA8A (ENSG00000182013)	PNMA8C (ENSG00000277531)	CCDC8 (ENSG00000169515)	PPP5C (ENSG00000011485)	HIF3A (ENSG00000124440)	IGFL1 (ENSG00000188293)	IGFL2 (ENSG00000204866)	IGFL3 (ENSG00000188624)	IGFL4 (ENSG00000204869)	PGLYRP1 (ENSG00000008438)	CCDC61 (ENSG00000104983)	NOVA2 (ENSG00000104967)	NANOS2 (ENSG00000188425) ##22	MYPOP (ENSG00000176182)	IRF2BP1 (ENSG00000170604)	FOXA3 (ENSG00000170608)	SYMPK (ENSG00000125755)	RSPH6A (ENSG00000104941)	DMWD (ENSG00000185800)	ENSG00000268434	DMPK (ENSG00000104936)	SIX5 (ENSG00000177045)	MEIOSIN (ENSG00000237452)	FBXO46 (ENSG00000177051)	QPCTL (ENSG00000011478)	SNRPD2 (ENSG00000125743)	GIPR (ENSG00000010310)	EML2 (ENSG00000125746)
Gorilla	MODERN SPECIES	10	ENSGGOG00000024504	ENSGGOG00000015668	PNMA8A (ENSGGOG00000001214)	PNMA8C (ENSGGOG00000040172)	CCDC8 (ENSGGOG00000016630)	PPP5C (ENSGGOG00000007562)	HIF3A (ENSGGOG00000007551)	IGFL1 (ENSGGOG00000011461)	IGFL2 (ENSGGOG00000024074)	ENSGGOG00000028458	IGFL3 (ENSGGOG00000005560)	IGFL4 (ENSGGOG00000027623)	PGLYRP1 (ENSGGOG00000011126)	ENSGGOG00000011115	NOVA2 (ENSGGOG00000000325)	NANOS2 (ENSGGOG00000013447) ##22	MYPOP (ENSGGOG00000017080)	IRF2BP1 (ENSGGOG00000023972)	FOXA3 (ENSGGOG00000003972)	SYMPK (ENSGGOG00000003410)	RSPH6A (ENSGGOG00000003405)	DMWD (ENSGGOG00000007982)	DMPK (ENSGGOG00000007967)	SIX5 (ENSGGOG00000007958)	BHMG1 (ENSGGOG00000036840)	FBXO46 (ENSGGOG00000027287)	QPCTL (ENSGGOG00000002353)	SNRPD2 (ENSGGOG00000002350)	GIPR (ENSGGOG00000016144)	ENSGGOG00000015482	GPR4 (ENSGGOG00000043968)
Orangutan	MODERN SPECIES	10	ENSPPYG00000031172	PNMA8B (ENSPPYG00000010152)	PNMA8A (ENSPPYG00000035419)	PNMA8C (ENSPPYG00000037781)	CCDC8 (ENSPPYG00000010150)	PPP5C (ENSPPYG00000010148)	HIF3A (ENSPPYG00000010147)	IGFL1 (ENSPPYG00000040323)	ENSPPYG00000040668	IGFL3 (ENSPPYG00000010144)	ENSPPYG00000029912	IGFL4 (ENSPPYG00000010142)	PGLYRP1 (ENSPPYG00000010141)	CCDC61 (ENSPPYG00000010140)	NOVA2 (ENSPPYG00000010139)	NANOS2 (ENSPPYG00000010138) ##22	ENSPPYG00000031914	IRF2BP1 (ENSPPYG00000010136)	FOXA3 (ENSPPYG00000010580)	SYMPK (ENSPPYG00000010135)	RSPH6A (ENSPPYG00000010134)	DMWD (ENSPPYG00000010133)	DMPK (ENSPPYG00000010132)	SIX5 (ENSPPYG00000010131)	MEIOSIN (ENSPPYG00000036674)	FBXO46 (ENSPPYG00000041185)	QPCTL (ENSPPYG00000010130)	ENSPPYG00000010129	GIPR (ENSPPYG00000010128)	ENSPPYG00000010127	GPR4 (ENSPPYG00000010126)
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Macaca	ANCESTRAL SPECIES	12	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Pig-tailed macaque	MODERN SPECIES	551	CALM3 (ENSMNEG00000038313)	ENSMNEG00000035646	PNMA8A (ENSMNEG00000028579)	PNMA8C (ENSMNEG00000013860)	CCDC8 (ENSMNEG00000035328)	ENSMNEG00000039917	PPP5C (ENSMNEG00000029801)	HIF3A (ENSMNEG00000038570)	IGFL1 (ENSMNEG00000040374)	IGFL3 (ENSMNEG00000044243)	ENSMNEG00000041271	ENSMNEG00000023075	PGLYRP1 (ENSMNEG00000011734)	CCDC61 (ENSMNEG00000035233)	NOVA2 (ENSMNEG00000040253)	NANOS2 (ENSMNEG00000004633) ##22	MYPOP (ENSMNEG00000031648)	IRF2BP1 (ENSMNEG00000017409)	FOXA3 (ENSMNEG00000040470)	SYMPK (ENSMNEG00000019439)	RSPH6A (ENSMNEG00000040843)	DMWD (ENSMNEG00000031944)	DMPK (ENSMNEG00000037335)	SIX5 (ENSMNEG00000032313)	MEIOSIN (ENSMNEG00000043184)	FBXO46 (ENSMNEG00000027865)	QPCTL (ENSMNEG00000035757)	ENSMNEG00000039787	GIPR (ENSMNEG00000035353)	ENSMNEG00000042527	GPR4 (ENSMNEG00000002892)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00390000015797.c.b	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00990000210495	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B
Rhesus	MODERN SPECIES	10	CALM3 (ENSMMUG00000017921)	ENSMMUG00000053552	PNMA8A (ENSMMUG00000005827)	PNMA8C (ENSMMUG00000061795)	CCDC8 (ENSMMUG00000003190)	ENSMMUG00000000218	PPP5C (ENSMMUG00000000217)	HIF3A (ENSMMUG00000000215)	IGFL1 (ENSMMUG00000020229)	ENSMMUG00000044928	IGFL3 (ENSMMUG00000063797)	ENSMMUG00000041352	PGLYRP1 (ENSMMUG00000008742)	CCDC61 (ENSMMUG00000008741)	NOVA2 (ENSMMUG00000004085)	NANOS2 (ENSMMUG00000008103) ##22	MYPOP (ENSMMUG00000049820)	FOXA3 (ENSMMUG00000015438)	SYMPK (ENSMMUG00000015428)	ENSMMUG00000056347	RSPH6A (ENSMMUG00000006590)	DMPK (ENSMMUG00000016457)	SIX5 (ENSMMUG00000051573)	MEIOSIN (ENSMMUG00000049025)	FBXO46 (ENSMMUG00000021360)	QPCTL (ENSMMUG00000006940)	SNRPD2 (ENSMMUG00000006937)	GIPR (ENSMMUG00000006936)	ENSMMUG00000019032	GPR4 (ENSMMUG00000019031)	ENSMMUG00000058115
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000002915	CALM3 (ENSMFAG00000036156)	ENSMFAG00000035539	PNMA8A (ENSMFAG00000006014)	PNMA8C (ENSMFAG00000029984)	CCDC8 (ENSMFAG00000041847)	ENSMFAG00000036651	PPP5C (ENSMFAG00000034179)	HIF3A (ENSMFAG00000025583)	ENSMFAG00000057751	IGFL3 (ENSMFAG00000003659)	ENSMFAG00000001824	PGLYRP1 (ENSMFAG00000032464)	CCDC61 (ENSMFAG00000035042)	NOVA2 (ENSMFAG00000043672)	NANOS2 (ENSMFAG00000017215) ##22	IRF2BP1 (ENSMFAG00000061076)	FOXA3 (ENSMFAG00000040557)	SYMPK (ENSMFAG00000038558)	RSPH6A (ENSMFAG00000029233)	DMWD (ENSMFAG00000033696)	DMPK (ENSMFAG00000037913)	ENSMFAG00000054039	MEIOSIN (ENSMFAG00000038095)	FBXO46 (ENSMFAG00000004080)	QPCTL (ENSMFAG00000009032)	GIPR (ENSMFAG00000043015)	EML2 (ENSMFAG00000001217)	OPA3 (ENSMFAG00000045575)	VASP (ENSMFAG00000036820)	PPM1N (ENSMFAG00000040939)
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Olive baboon	MODERN SPECIES	12	ENSPANG00000015474	PNMA8B (ENSPANG00000039504)	PNMA8A (ENSPANG00000018286)	PNMA8C (ENSPANG00000033741)	CCDC8 (ENSPANG00000020252)	ENSPANG00000029483	PPP5C (ENSPANG00000002966)	HIF3A (ENSPANG00000014598)	ENSPANG00000044504	ENSPANG00000039314	ENSPANG00000038110	IGFL3 (ENSPANG00000019926)	PGLYRP1 (ENSPANG00000048485)	CCDC61 (ENSPANG00000009365)	NOVA2 (ENSPANG00000023868)	NANOS2 (ENSPANG00000009327) ##22	MYPOP (ENSPANG00000046784)	IRF2BP1 (ENSPANG00000002641)	FOXA3 (ENSPANG00000034535)	SYMPK (ENSPANG00000019930)	RSPH6A (ENSPANG00000011597)	DMWD (ENSPANG00000001288)	DMPK (ENSPANG00000002664)	SIX5 (ENSPANG00000005316)	MEIOSIN (ENSPANG00000018287)	FBXO46 (ENSPANG00000002640)	QPCTL (ENSPANG00000016116)	ENSPANG00000008802	GIPR (ENSPANG00000014706)	EML2 (ENSPANG00000007941)	GPR4 (ENSPANG00000013282)
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Sooty mangabey	MODERN SPECIES	228	CALM3 (ENSCATG00000036622)	ENSCATG00000011877	PNMA8A (ENSCATG00000037135)	PNMA8C (ENSCATG00000016093)	CCDC8 (ENSCATG00000030098)	ENSCATG00000021418	PPP5C (ENSCATG00000031479)	HIF3A (ENSCATG00000013440)	IGFL1 (ENSCATG00000040141)	IGFL3 (ENSCATG00000018431)	ENSCATG00000032983	IGFL4 (ENSCATG00000019969)	PGLYRP1 (ENSCATG00000018338)	CCDC61 (ENSCATG00000033104)	NOVA2 (ENSCATG00000045122)	NANOS2 (ENSCATG00000018951) ##22	MYPOP (ENSCATG00000044811)	IRF2BP1 (ENSCATG00000019478)	FOXA3 (ENSCATG00000040589)	SYMPK (ENSCATG00000045107)	RSPH6A (ENSCATG00000031236)	DMWD (ENSCATG00000041290)	DMPK (ENSCATG00000044065)	SIX5 (ENSCATG00000034595)	MEIOSIN (ENSCATG00000014100)	FBXO46 (ENSCATG00000019580)	QPCTL (ENSCATG00000035425)	ENSCATG00000031591	GIPR (ENSCATG00000039010)	EML2 (ENSCATG00000044498)	GPR4 (ENSCATG00000015059)
Drill	MODERN SPECIES	494											IGFL3 (ENSMLEG00000035741)	ENSMLEG00000040495	PGLYRP1 (ENSMLEG00000039016)	ENSMLEG00000043809	NOVA2 (ENSMLEG00000030389)	NANOS2 (ENSMLEG00000001810) ##22	MYPOP (ENSMLEG00000034017)	FOXA3 (ENSMLEG00000036460)	SYMPK (ENSMLEG00000040508)	RSPH6A (ENSMLEG00000038849)	DMWD (ENSMLEG00000020384)	DMPK (ENSMLEG00000039408)	ENSMLEG00000037131	MEIOSIN (ENSMLEG00000038011)	ENSMLEG00000038790	QPCTL (ENSMLEG00000013540)	SNRPD2 (ENSMLEG00000033961)	GIPR (ENSMLEG00000043576)	ENSMLEG00000030229	GPR4 (ENSMLEG00000003807)	ENSMLEG00000031803
Vervet Monkey	MODERN SPECIES	25	CALM3 (ENSCSAG00000003050)	ENSCSAG00000019634	PNMA8B (ENSCSAG00000019633)	PNMA8A (ENSCSAG00000003053)	CCDC8 (ENSCSAG00000019632)	ENSCSAG00000019631	ENSCSAG00000019630	PPP5C (ENSCSAG00000003061)	HIF3A (ENSCSAG00000003068)	IGFL1 (ENSCSAG00000003071)	IGFL3 (ENSCSAG00000003072)	IGFL4 (ENSCSAG00000003076)	PGLYRP1 (ENSCSAG00000003083)	CCDC61 (ENSCSAG00000003098)	NOVA2 (ENSCSAG00000003105)	NANOS2 (ENSCSAG00000019629) ##22	MYPOP (ENSCSAG00000003108)	IRF2BP1 (ENSCSAG00000019628)	FOXA3 (ENSCSAG00000003110)	SYMPK (ENSCSAG00000003115)	RSPH6A (ENSCSAG00000003122)	DMWD (ENSCSAG00000003130)	DMPK (ENSCSAG00000003146)	SIX5 (ENSCSAG00000003151)	MEIOSIN (ENSCSAG00000003154)	FBXO46 (ENSCSAG00000019627)	QPCTL (ENSCSAG00000003156)	SNRPD2 (ENSCSAG00000003157)	GIPR (ENSCSAG00000003163)	GPR4 (ENSCSAG00000019626)	OPA3 (ENSCSAG00000003168)
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT00390000015797.c.b.d	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Golden snub-nosed monkey	MODERN SPECIES	2027	ENSRROG00000035990	PNMA8A (ENSRROG00000013610)	PNMA8C (ENSRROG00000027253)	ENSRROG00000038440	PPP5C (ENSRROG00000027318)	HIF3A (ENSRROG00000032780)	IGFL1 (ENSRROG00000029689)	IGFL2 (ENSRROG00000012003)	ENSRROG00000045549	IGFL3 (ENSRROG00000039749)	ENSRROG00000043631	IGFL4 (ENSRROG00000043261)	PGLYRP1 (ENSRROG00000035762)	CCDC61 (ENSRROG00000032654)	NOVA2 (ENSRROG00000037399)	NANOS2 (ENSRROG00000014903) ##22	MYPOP (ENSRROG00000031078)	IRF2BP1 (ENSRROG00000024812)	FOXA3 (ENSRROG00000041934)	SYMPK (ENSRROG00000024834)	RSPH6A (ENSRROG00000038540)	DMWD (ENSRROG00000036990)	DMPK (ENSRROG00000037325)	SIX5 (ENSRROG00000026145)	MEIOSIN (ENSRROG00000037479)	FBXO46 (ENSRROG00000027737)	QPCTL (ENSRROG00000043413)	SNRPD2 (ENSRROG00000034764)	GIPR (ENSRROG00000031321)	EML2 (ENSRROG00000035796)	GPR4 (ENSRROG00000019999)
Black snub-nosed monkey	MODERN SPECIES	477	ENSRBIG00000040350	PNMA8B (ENSRBIG00000043852)	PNMA8A (ENSRBIG00000032652)	PNMA8C (ENSRBIG00000007752)	ENSRBIG00000041650	PPP5C (ENSRBIG00000043486)	HIF3A (ENSRBIG00000037340)	IGFL1 (ENSRBIG00000041594)	IGFL2 (ENSRBIG00000013672)	ENSRBIG00000037692	ENSRBIG00000041617	ENSRBIG00000026369	IGFL4 (ENSRBIG00000017354)	PGLYRP1 (ENSRBIG00000041217)	CCDC61 (ENSRBIG00000027796)	NANOS2 (ENSRBIG00000023726) ##22	MYPOP (ENSRBIG00000035669)	IRF2BP1 (ENSRBIG00000025631)	FOXA3 (ENSRBIG00000037992)	SYMPK (ENSRBIG00000040963)	RSPH6A (ENSRBIG00000044850)	DMWD (ENSRBIG00000038254)	DMPK (ENSRBIG00000033839)	SIX5 (ENSRBIG00000013549)	MEIOSIN (ENSRBIG00000043746)	FBXO46 (ENSRBIG00000013409)	QPCTL (ENSRBIG00000037229)	ENSRBIG00000040969	GIPR (ENSRBIG00000044071)	EML2 (ENSRBIG00000027020)	GPR4 (ENSRBIG00000032340)
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C.c	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Cebidae	ANCESTRAL SPECIES	8	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C.c	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.nb.d	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Marmoset	MODERN SPECIES	14	DACT3 (ENSCJAG00000042823)	GNG8 (ENSCJAG00000011841)	PTGIR (ENSCJAG00000011850)	CALM3 (ENSCJAG00000078405)	PNMA8B (ENSCJAG00000011875)	PNMA8C (ENSCJAG00000075292)	CCDC8 (ENSCJAG00000074769)	PPP5C (ENSCJAG00000011891)	HIF3A (ENSCJAG00000012019)	ENSCJAG00000022850	IGFL1 (ENSCJAG00000012086)	PGLYRP1 (ENSCJAG00000012095)	CCDC61 (ENSCJAG00000012104)	NOVA2 (ENSCJAG00000012121)	ENSCJAG00000074719	NANOS2 (ENSCJAG00000012141) ##22	MYPOP (ENSCJAG00000063769)	IRF2BP1 (ENSCJAG00000038370)	FOXA3 (ENSCJAG00000073792)	SYMPK (ENSCJAG00000012172)	RSPH6A (ENSCJAG00000053794)	DMWD (ENSCJAG00000012286)	DMPK (ENSCJAG00000012303)	SIX5 (ENSCJAG00000012372)	FBXO46 (ENSCJAG00000012379)	QPCTL (ENSCJAG00000082509)	ENSCJAG00000019291	GIPR (ENSCJAG00000012422)	EML2 (ENSCJAG00000012469)	GPR4 (ENSCJAG00000047762)	OPA3 (ENSCJAG00000045305)
Tarsier	MODERN SPECIES	1893																NANOS2 (ENSTSYG00000028873) ##22	FOXA3 (ENSTSYG00000030463)	SYMPK (ENSTSYG00000006268)
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Glires	ANCESTRAL SPECIES	6	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B
Rodentia	ANCESTRAL SPECIES	8	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Muroidea	ANCESTRAL SPECIES	18	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Cricetidae	ANCESTRAL SPECIES	29	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.b.a	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Cricetinae	ANCESTRAL SPECIES	42												ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Chinese hamster chok1gshd	MODERN SPECIES	328								ENSCGRG00001020237	ENSCGRG00001014992	ENSCGRG00001013587	ENSCGRG00001019604	ENSCGRG00001016889	ENSCGRG00001015639	Pglyrp1 (ENSCGRG00001014568)	Nova2 (ENSCGRG00001013374)	Nanos2 (ENSCGRG00001013726) ##22	Mypop (ENSCGRG00001011751)	Irf2bp1 (ENSCGRG00001014712)	Foxa3 (ENSCGRG00001011296)	Sympk (ENSCGRG00001010086)	Rsph6a (ENSCGRG00001015748)	Dmwd (ENSCGRG00001012273)	Dmpk (ENSCGRG00001006164)	Six5 (ENSCGRG00001017935)	Meiosin (ENSCGRG00001020518)	Fbxo46 (ENSCGRG00001014313)	Qpctl (ENSCGRG00001000786)	Gipr (ENSCGRG00001000434)	Eml2 (ENSCGRG00001001692)	Gpr4 (ENSCGRG00001013541)	Opa3 (ENSCGRG00001016230)
Cricetidae_B	ANCESTRAL SPECIES	41								ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.b.a	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000014686	ENSPEMG00000031343	ENSPEMG00000029738	ENSPEMG00000030976	ENSPEMG00000024553	ENSPEMG00000025786	ENSPEMG00000025341	ENSPEMG00000030981	ENSPEMG00000028933	ENSPEMG00000026361	ENSPEMG00000009668	Pglyrp1 (ENSPEMG00000030075)	Ccdc61 (ENSPEMG00000016005)	Nova2 (ENSPEMG00000025491)	ENSPEMG00000030568	Nanos2 (ENSPEMG00000014999) ##22	Mypop (ENSPEMG00000012458)	Irf2bp1 (ENSPEMG00000009598)	Foxa3 (ENSPEMG00000016723)	Sympk (ENSPEMG00000007564)	Rsph6a (ENSPEMG00000009606)	Dmwd (ENSPEMG00000018276)	Dmpk (ENSPEMG00000030626)	Six5 (ENSPEMG00000014887)	Meiosin (ENSPEMG00000011376)	Fbxo46 (ENSPEMG00000012576)	Qpctl (ENSPEMG00000016557)	Snrpd2 (ENSPEMG00000004117)	Gipr (ENSPEMG00000014106)	Eml2 (ENSPEMG00000008721)	Gpr4 (ENSPEMG00000000584)
Prairie vole	MODERN SPECIES	157											ENSMOCG00000017695	ENSMOCG00000003246	Pglyrp1 (ENSMOCG00000009253)	ENSMOCG00000019652	Nova2 (ENSMOCG00000018489)	Nanos2 (ENSMOCG00000001985) ##22	Mypop (ENSMOCG00000015120)	ENSMOCG00000000161	Irf2bp1 (ENSMOCG00000002955)	Foxa3 (ENSMOCG00000002412)	Sympk (ENSMOCG00000008388)	Rsph6a (ENSMOCG00000000271)	Dmwd (ENSMOCG00000017387)	ENSMOCG00000013066	Six5 (ENSMOCG00000004062)	Meiosin (ENSMOCG00000014656)	Fbxo46 (ENSMOCG00000019977)	Qpctl (ENSMOCG00000015780)	Snrpd2 (ENSMOCG00000017080)	Gipr (ENSMOCG00000015992)	Eml2 (ENSMOCG00000013139)
Murinae	ANCESTRAL SPECIES	19	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.d	ENSGT01100000263479.D.a.d.b.a.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.b	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Mus	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.b	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740.g.a	ENSGT00940000161740.g.b	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.b.d	ENSGT01100000263479.D.a.d.b.a.b.b.c	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740.g.a	ENSGT00940000161740.g.b	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045.i	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Ryukyu mouse	MODERN SPECIES	16	Pnma8b (MGP_CAROLIEiJ_G0029248)	Pnma8a (MGP_CAROLIEiJ_G0029249)	Ccdc8 (MGP_CAROLIEiJ_G0029250)	Ppp5c (MGP_CAROLIEiJ_G0029251)	Hif3a (MGP_CAROLIEiJ_G0029252)	Psg16 (MGP_CAROLIEiJ_G0029253)	MGP_CAROLIEiJ_G0029254	MGP_CAROLIEiJ_G0029255	MGP_CAROLIEiJ_G0029256	Igfl3 (MGP_CAROLIEiJ_G0029257)	Mill1 (MGP_CAROLIEiJ_G0029258)	Pglyrp1 (MGP_CAROLIEiJ_G0029259)	Ccdc61 (MGP_CAROLIEiJ_G0029260)	MGP_CAROLIEiJ_G0029262	MGP_CAROLIEiJ_G0029261	Nanos2 (MGP_CAROLIEiJ_G0029263) ##22	Mypop (MGP_CAROLIEiJ_G0029264)	Irf2bp1 (MGP_CAROLIEiJ_G0029265)	Foxa3 (MGP_CAROLIEiJ_G0029266)	Sympk (MGP_CAROLIEiJ_G0029267)	Rsph6a (MGP_CAROLIEiJ_G0029268)	Dmwd (MGP_CAROLIEiJ_G0029269)	Dmpk (MGP_CAROLIEiJ_G0029270)	Six5 (MGP_CAROLIEiJ_G0029271)	Meiosin (MGP_CAROLIEiJ_G0029272)	Fbxo46 (MGP_CAROLIEiJ_G0029273)	Qpctl (MGP_CAROLIEiJ_G0029274)	Snrpd2 (MGP_CAROLIEiJ_G0029275)	Gipr (MGP_CAROLIEiJ_G0029276)	Eml2 (MGP_CAROLIEiJ_G0029277)	Gpr4 (MGP_CAROLIEiJ_G0029278)
Mus_B	ANCESTRAL SPECIES		ENSGT01100000263479.D.a.d.b.b.a.b	ENSGT00390000009557.B	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.b	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740.g.a	ENSGT00940000161740.g.b	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045.i	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Mouse	MODERN SPECIES	16	Psg18 (ENSMUSG00000003505)	Psg28 (ENSMUSG00000030373)	Psg26 (ENSMUSG00000070799)	Psg25 (ENSMUSG00000070798)	Psg27 (ENSMUSG00000070797)	Psg23 (ENSMUSG00000074359)	Psg21 (ENSMUSG00000070796)	Psg20 (ENSMUSG00000063305)	Psg22 (ENSMUSG00000044903)	Psg19 (ENSMUSG00000004542)	Psg17 (ENSMUSG00000004540)	Mill2 (ENSMUSG00000040987)	Pglyrp1 (ENSMUSG00000030413)	Ccdc61 (ENSMUSG00000074358)	Nova2 (ENSMUSG00000030411)	Nanos2 (ENSMUSG00000051965) ##22	Mypop (ENSMUSG00000048481)	Irf2bp1 (ENSMUSG00000044030)	Foxa3 (ENSMUSG00000040891)	Sympk (ENSMUSG00000023118)	Rsph6a (ENSMUSG00000040866)	Dmwd (ENSMUSG00000030410)	Dmpk (ENSMUSG00000030409)	Six5 (ENSMUSG00000040841)	Meiosin (ENSMUSG00000085601)	Fbxo46 (ENSMUSG00000050428)	Qpctl (ENSMUSG00000030407)	Snrpd2 (ENSMUSG00000040824)	Gipr (ENSMUSG00000030406)	Eml2 (ENSMUSG00000040811)	Gpr4 (ENSMUSG00000044317)
Mus_C	ANCESTRAL SPECIES	15	ENSGT01100000263479.D.a.d.b.b.a.b	ENSGT00390000009557.B	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.b	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740.g.a	ENSGT00940000161740.g.b	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045.i	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Steppe mouse	MODERN SPECIES	2900														ENSMSIG00000004443	ENSMSIG00000004448	Nanos2 (ENSMSIG00000004468) ##22	Mypop (ENSMSIG00000004475)	ENSMSIG00000004494	Irf2bp1 (ENSMSIG00000004499)	Foxa3 (ENSMSIG00000004505)	Sympk (ENSMSIG00000004528)	Rsph6a (ENSMSIG00000004641)	ENSMSIG00000004668	Dmpk (ENSMSIG00000004700)	Six5 (ENSMSIG00000004988)	Meiosin (ENSMSIG00000004995)	Fbxo46 (ENSMSIG00000005049)	Qpctl (ENSMSIG00000005068)	Snrpd2 (ENSMSIG00000005096)	Gipr (ENSMSIG00000005108)	Eml2 (ENSMSIG00000005175)
spretus	MODERN SPECIES	16	MGP_SPRETEiJ_G0030332	Ceacam3 (MGP_SPRETEiJ_G0030333)	MGP_SPRETEiJ_G0030334	MGP_SPRETEiJ_G0030335	Ceacam11 (MGP_SPRETEiJ_G0030336)	Ceacam13 (MGP_SPRETEiJ_G0030337)	Ceacam12 (MGP_SPRETEiJ_G0030338)	Igfl3 (MGP_SPRETEiJ_G0030339)	MGP_SPRETEiJ_G0030340	MGP_SPRETEiJ_G0030341	MGP_SPRETEiJ_G0030342	Pglyrp1 (MGP_SPRETEiJ_G0030343)	Ccdc61 (MGP_SPRETEiJ_G0030344)	Nova2 (MGP_SPRETEiJ_G0030345)	MGP_SPRETEiJ_G0030346	Nanos2 (MGP_SPRETEiJ_G0030347) ##22	Mypop (MGP_SPRETEiJ_G0030348)	Irf2bp1 (MGP_SPRETEiJ_G0030349)	Foxa3 (MGP_SPRETEiJ_G0030350)	MGP_SPRETEiJ_G0030351	Rsph6a (MGP_SPRETEiJ_G0030352)	Dmwd (MGP_SPRETEiJ_G0030353)	Dmpk (MGP_SPRETEiJ_G0030354)	Six5 (MGP_SPRETEiJ_G0030355)	Meiosin (MGP_SPRETEiJ_G0030356)	Fbxo46 (MGP_SPRETEiJ_G0030357)	Qpctl (MGP_SPRETEiJ_G0030358)	MGP_SPRETEiJ_G0030359	Gipr (MGP_SPRETEiJ_G0030360)	Eml2 (MGP_SPRETEiJ_G0030361)	Gpr4 (MGP_SPRETEiJ_G0030362)
Shrew mouse	MODERN SPECIES	10	Ppp5c (MGP_PahariEiJ_G0021107)	Hif3a (MGP_PahariEiJ_G0021108)	Psg16 (MGP_PahariEiJ_G0021109)	Psg29 (MGP_PahariEiJ_G0021110)	Ceacam3 (MGP_PahariEiJ_G0021111)	MGP_PahariEiJ_G0021112	MGP_PahariEiJ_G0021113	Psg17 (MGP_PahariEiJ_G0021114)	MGP_PahariEiJ_G0021116	MGP_PahariEiJ_G0021115	MGP_PahariEiJ_G0021117	Pglyrp1 (MGP_PahariEiJ_G0021119)	Ccdc61 (MGP_PahariEiJ_G0021120)	Nova2 (MGP_PahariEiJ_G0021121)	MGP_PahariEiJ_G0021122	Nanos2 (MGP_PahariEiJ_G0021123) ##22	Mypop (MGP_PahariEiJ_G0021124)	Irf2bp1 (MGP_PahariEiJ_G0021125)	Foxa3 (MGP_PahariEiJ_G0021126)	Sympk (MGP_PahariEiJ_G0021127)	Rsph6a (MGP_PahariEiJ_G0021128)	Dmwd (MGP_PahariEiJ_G0021129)	Dmpk (MGP_PahariEiJ_G0021130)	Six5 (MGP_PahariEiJ_G0021131)	Meiosin (MGP_PahariEiJ_G0021132)	Fbxo46 (MGP_PahariEiJ_G0021133)	Qpctl (MGP_PahariEiJ_G0021134)	Snrpd2 (MGP_PahariEiJ_G0021135)	Gipr (MGP_PahariEiJ_G0021136)	Eml2 (MGP_PahariEiJ_G0021137)	Gpr4 (MGP_PahariEiJ_G0021138)
Rat	MODERN SPECIES		Ceacam12 (ENSRNOG00000042158)	AC093995.2 (ENSRNOG00000032940)	ENSRNOG00000063019	Mill1 (ENSRNOG00000017699)	ENSRNOG00000066787	Psg19 (ENSRNOG00000038101)	LOC102557319 (ENSRNOG00000071114)	ENSRNOG00000068164	AC093995.1 (ENSRNOG00000026891)	AC093995.3 (ENSRNOG00000051815)	ENSRNOG00000062548	Micb (ENSRNOG00000057645)	Pglyrp1 (ENSRNOG00000013395)	Ccdc61 (ENSRNOG00000013767)	Nova2 (ENSRNOG00000013847)	Nanos2 (ENSRNOG00000038088) ##22	Mypop (ENSRNOG00000014132)	AC110846.1 (ENSRNOG00000038087)	Irf2bp1 (ENSRNOG00000014252)	Foxa3 (ENSRNOG00000014256)	Sympk (ENSRNOG00000014353)	Rsph6a (ENSRNOG00000061526)	Dmwd (ENSRNOG00000014984)	Dmpk (ENSRNOG00000015085)	Six5 (ENSRNOG00000060146)	Meiosin (ENSRNOG00000067421)	Fbxo46 (ENSRNOG00000008815)	Qpctl (ENSRNOG00000015413)	Snrpd2 (ENSRNOG00000015844)	Gipr (ENSRNOG00000015860)	Eml2 (ENSRNOG00000030127)
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00390000007074	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00390000007074	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a	ENSGT00390000007074	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Long-tailed chinchilla	MODERN SPECIES	281	ENSCLAG00000002077	FKRP (ENSCLAG00000001845)	STRN4 (ENSCLAG00000001542)	PRKD2 (ENSCLAG00000001395)	ENSCLAG00000001276	GNG8 (ENSCLAG00000004399)	PTGIR (ENSCLAG00000004207)	CALM3 (ENSCLAG00000003822)	ENSCLAG00000003395	ENSCLAG00000002763	PPP5C (ENSCLAG00000001548)	HIF3A (ENSCLAG00000001139)	PGLYRP1 (ENSCLAG00000001072)	ENSCLAG00000001044	ENSCLAG00000000991	NANOS2 (ENSCLAG00000001832) ##22	MYPOP (ENSCLAG00000001704)	IRF2BP1 (ENSCLAG00000001668)	FOXA3 (ENSCLAG00000001661)	SYMPK (ENSCLAG00000001206)	RSPH6A (ENSCLAG00000002444)	DMWD (ENSCLAG00000002306)	DMPK (ENSCLAG00000000761)	SIX5 (ENSCLAG00000000557)	MEIOSIN (ENSCLAG00000000408)	FBXO46 (ENSCLAG00000001009)	QPCTL (ENSCLAG00000000941)	SNRPD2 (ENSCLAG00000000931)	GIPR (ENSCLAG00000001135)	EML2 (ENSCLAG00000000732)	GPR4 (ENSCLAG00000017535)
Guinea pig	MODERN SPECIES	80	STRN4 (ENSCPOG00000001053)	PRKD2 (ENSCPOG00000003294)	DACT3 (ENSCPOG00000022203)	GNG8 (ENSCPOG00000031647)	PTGIR (ENSCPOG00000034773)	CALM3 (ENSCPOG00000029998)	ENSCPOG00000027577	PNMA8A (ENSCPOG00000011877)	GPATCH1 (ENSCPOG00000024477)	PPP5C (ENSCPOG00000023554)	HIF3A (ENSCPOG00000024199)	ENSCPOG00000024181	PGLYRP1 (ENSCPOG00000032784)	CCDC61 (ENSCPOG00000000061)	ENSCPOG00000020582	NANOS2 (ENSCPOG00000014969) ##22	MYPOP (ENSCPOG00000012168)	FOXA3 (ENSCPOG00000024661)	SYMPK (ENSCPOG00000010434)	RSPH6A (ENSCPOG00000023899)	DMWD (ENSCPOG00000037744)	DMPK (ENSCPOG00000015082)	SIX5 (ENSCPOG00000014282)	MEIOSIN (ENSCPOG00000031479)	FBXO46 (ENSCPOG00000021847)	ENSCPOG00000022016	QPCTL (ENSCPOG00000019359)	ENSCPOG00000035154	GIPR (ENSCPOG00000002438)	EML2 (ENSCPOG00000013465)	OPA3 (ENSCPOG00000035437)
Naked mole-rat female	MODERN SPECIES	21	PRKD2 (ENSHGLG00000017425)	DACT3 (ENSHGLG00000047496)	ENSHGLG00000034612	PTGIR (ENSHGLG00000007145)	Calm3 (ENSHGLG00000007790)	ENSHGLG00000009135	PNMA8A (ENSHGLG00000013517)	ENSHGLG00000009334	CCDC8 (ENSHGLG00000048973)	ENSHGLG00000015987	HIF3A (ENSHGLG00000015903)	ENSHGLG00000032378	PGLYRP1 (ENSHGLG00000044839)	CCDC61 (ENSHGLG00000016189)	NOVA2 (ENSHGLG00000016103)	NANOS2 (ENSHGLG00000038379) ##22	ENSHGLG00000049227	MYPOP (ENSHGLG00000017201)	IRF2BP1 (ENSHGLG00000021426)	FOXA3 (ENSHGLG00000019353)	SYMPK (ENSHGLG00000005228)	RSPH6A (ENSHGLG00000009028)	DMWD (ENSHGLG00000005355)	DMPK (ENSHGLG00000006955)	ENSHGLG00000036477	ENSHGLG00000039927	MEIOSIN (ENSHGLG00000005115)	FBXO46 (ENSHGLG00000046481)	QPCTL (ENSHGLG00000009596)	ENSHGLG00000015364	GIPR (ENSHGLG00000015458)
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B.p.b.a.b.a.b	ENSGT00390000009557.B.p.b.a.a	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Marmotini	ANCESTRAL SPECIES	7	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.B.p.a.a	ENSGT00390000009557.B.p.a.b	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Marmotini_b	ANCESTRAL SPECIES	49													ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	297										ENSUPAG00010021459	ENSUPAG00010021464	ENSUPAG00010021465 ##22	PGLYRP1 (ENSUPAG00010021468)	CCDC61 (ENSUPAG00010021470)	NOVA2 (ENSUPAG00010021477)	ENSUPAG00010021480 ##22	ENSUPAG00010021483	MYPOP (ENSUPAG00010021489)	IRF2BP1 (ENSUPAG00010021494)	FOXA3 (ENSUPAG00010021496)	SYMPK (ENSUPAG00010021507)	RSPH6A (ENSUPAG00010021524)	DMWD (ENSUPAG00010021530)	DMPK (ENSUPAG00010021540)	SIX5 (ENSUPAG00010021595)	MEIOSIN (ENSUPAG00010021596)	FBXO46 (ENSUPAG00010021600)	QPCTL (ENSUPAG00010021602)	SNRPD2 (ENSUPAG00010021605)	GIPR (ENSUPAG00010021609)	EML2 (ENSUPAG00010021623)
Arctic ground squirrel	MODERN SPECIES	297														ENSUPAG00010021459	ENSUPAG00010021464	ENSUPAG00010021465 ##22	PGLYRP1 (ENSUPAG00010021468)	CCDC61 (ENSUPAG00010021470)	NOVA2 (ENSUPAG00010021477)	ENSUPAG00010021480 ##22	ENSUPAG00010021483	MYPOP (ENSUPAG00010021489)	IRF2BP1 (ENSUPAG00010021494)	FOXA3 (ENSUPAG00010021496)	SYMPK (ENSUPAG00010021507)	RSPH6A (ENSUPAG00010021524)	DMWD (ENSUPAG00010021530)	DMPK (ENSUPAG00010021540)	SIX5 (ENSUPAG00010021595)	MEIOSIN (ENSUPAG00010021596)	FBXO46 (ENSUPAG00010021600)
Squirrel	MODERN SPECIES	306												ENSSTOG00000031132	PGLYRP1 (ENSSTOG00000020188)	CCDC61 (ENSSTOG00000007497)	NOVA2 (ENSSTOG00000022126)	NANOS2 (ENSSTOG00000021724) ##22	IRF2BP1 (ENSSTOG00000028673)	FOXA3 (ENSSTOG00000027457)	SYMPK (ENSSTOG00000001534)	RSPH6A (ENSSTOG00000001528)	DMWD (ENSSTOG00000006139)	DMPK (ENSSTOG00000001508)	SIX5 (ENSSTOG00000028295)	FBXO46 (ENSSTOG00000023556)	QPCTL (ENSSTOG00000013895)	SNRPD2 (ENSSTOG00000024377)	GIPR (ENSSTOG00000028727)	EML2 (ENSSTOG00000013316)	GPR4 (ENSSTOG00000022015)	OPA3 (ENSSTOG00000029170)	VASP (ENSSTOG00000027705)
Alpin marmot	MODERN SPECIES	45	PTGIR (ENSMMMG00000013798)	CALM3 (ENSMMMG00000013799)	CCDC8 (ENSMMMG00000013809)	PNMA8C (ENSMMMG00000013814)	PNMA8A (ENSMMMG00000013817)	PPP5C (ENSMMMG00000013822)	HIF3A (ENSMMMG00000013829)	ENSMMMG00000013847	ENSMMMG00000013856	ENSMMMG00000013858	IGFL4 (ENSMMMG00000013859)	ENSMMMG00000013867	ENSMMMG00000013871	ENSMMMG00000013872	ENSMMMG00000013880	NANOS2 (ENSMMMG00000013883) ##22	PGLYRP1 (ENSMMMG00000013886)	CCDC61 (ENSMMMG00000013890)	NOVA2 (ENSMMMG00000013905)	MYPOP (ENSMMMG00000013910)	IRF2BP1 (ENSMMMG00000013923)	FOXA3 (ENSMMMG00000013927)	SYMPK (ENSMMMG00000013938)	RSPH6A (ENSMMMG00000013966)	DMPK (ENSMMMG00000013984)	ENSMMMG00000014098	MEIOSIN (ENSMMMG00000014100)	FBXO46 (ENSMMMG00000014127)	QPCTL (ENSMMMG00000014131)	ENSMMMG00000014144	GIPR (ENSMMMG00000014147)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005024690	ENSSVLG00005024665	ENSSVLG00005024643	ENSSVLG00005024617	ENSSVLG00005024595	ENSSVLG00005024573	ENSSVLG00005024560	ENSSVLG00005024545	ENSSVLG00005024520	ENSSVLG00005024476	ENSSVLG00005024415	PGLYRP1 (ENSSVLG00005024391)	CCDC61 (ENSSVLG00005024368)	NOVA2 (ENSSVLG00005024343)	ENSSVLG00005024334	NANOS2 (ENSSVLG00005024317) ##22	MYPOP (ENSSVLG00005024286)	IRF2BP1 (ENSSVLG00005024265)	FOXA3 (ENSSVLG00005024238)	SYMPK (ENSSVLG00005024212)	RSPH6A (ENSSVLG00005024118)	ENSSVLG00005024059	DMPK (ENSSVLG00005023879)	SIX5 (ENSSVLG00005023801)	MEIOSIN (ENSSVLG00005023736)	FBXO46 (ENSSVLG00005023711)	QPCTL (ENSSVLG00005023664)	ENSSVLG00005023631	GIPR (ENSSVLG00005023358)	EML2 (ENSSVLG00005023025)	GPR4 (ENSSVLG00005022943)
Lagomorpha	ANCESTRAL SPECIES	259															ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019
Rabbit	MODERN SPECIES	888															NOVA2 (ENSOCUG00000022891)	NANOS2 (ENSOCUG00000023755) ##22	ENSOCUG00000030302	MYPOP (ENSOCUG00000029475)	FOXA3 (ENSOCUG00000001477)	SYMPK (ENSOCUG00000005511)
Pika	MODERN SPECIES	5480															NOVA2 (ENSOPRG00000010051)	NANOS2 (ENSOPRG00000010043) ##22	ENSOPRG00000010032	FOXA3 (ENSOPRG00000010003)	SYMPK (ENSOPRG00000009967)	RSPH6A (ENSOPRG00000009934)	DMWD (ENSOPRG00000009894)	DMPK (ENSOPRG00000009854)
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a
Xenarthra	ANCESTRAL SPECIES	122													ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795
Sloth	MODERN SPECIES	9172																NANOS2 (ENSCHOG00000001937) ##22
Armadillo	MODERN SPECIES	4293													PGLYRP1 (ENSDNOG00000033764)	CCDC61 (ENSDNOG00000023673)	NOVA2 (ENSDNOG00000031258)	NANOS2 (ENSDNOG00000044718) ##22	MYPOP (ENSDNOG00000044809)	IRF2BP1 (ENSDNOG00000016864)	FOXA3 (ENSDNOG00000032062)	SYMPK (ENSDNOG00000016149)	RSPH6A (ENSDNOG00000016145)	ENSDNOG00000047818	ENSDNOG00000037350	SIX5 (ENSDNOG00000035763)	MEIOSIN (ENSDNOG00000037324)	FBXO46 (ENSDNOG00000032421)	ENSDNOG00000046083	SNRPD2 (ENSDNOG00000002365)	ENSDNOG00000037844	EML2 (ENSDNOG00000046547)	GPR4 (ENSDNOG00000043810)
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00940000162694	ENSGT00940000156765	ENSGT00390000009795	ENSGT00940000153887.B	ENSGT00940000161988	ENSGT00390000017608	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000162237	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00500000044869.a.b	ENSGT00390000017045	ENSGT00940000162453	ENSGT00450000040421	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00940000154133.B	ENSGT00940000161006	ENSGT00390000009557.B	ENSGT00390000009557.C	ENSGT00940000161745	ENSGT00940000158785	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.b	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00950000183181.B.b	ENSGT00950000183024.a.b.b	ENSGT00950000183095.a.b.a.b.a
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00940000162694	ENSGT00940000156765	ENSGT00390000009795	ENSGT00940000153887.B	ENSGT00940000161988	ENSGT00390000017608	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000162237	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00500000044869.a.b	ENSGT00390000017045	ENSGT00940000162453	ENSGT00450000040421	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00940000154133.B	ENSGT00940000161006	ENSGT00390000009557.B	ENSGT00390000009557.C	ENSGT00940000161745	ENSGT00940000158785	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.f.b.b	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00950000183181.B.b	ENSGT00950000183024.a.b.b	ENSGT00950000183095.a.b.a.b.a
Elephant	MODERN SPECIES	375	RTN2 (ENSLAFG00000028220)	VASP (ENSLAFG00000026860)	ENSLAFG00000027518	ENSLAFG00000028620	EML2 (ENSLAFG00000031949)	GIPR (ENSLAFG00000027053)	FBXO46 (ENSLAFG00000027244)	SNRPD2 (ENSLAFG00000004205)	QPCTL (ENSLAFG00000004208)	SIX5 (ENSLAFG00000030935)	DMPK (ENSLAFG00000010771)	DMWD (ENSLAFG00000014916)	RSPH6A (ENSLAFG00000008722)	SYMPK (ENSLAFG00000008726)	FOXA3 (ENSLAFG00000030436)	NANOS2 (ENSLAFG00000014090) ##22	NOVA2 (ENSLAFG00000025917)	CCDC61 (ENSLAFG00000003784)	ENSLAFG00000011331	IGFL4 (ENSLAFG00000001349)	ENSLAFG00000022007	ENSLAFG00000027748	ENSLAFG00000028116	ENSLAFG00000028836	IGFL1 (ENSLAFG00000030746)	HIF3A (ENSLAFG00000017230)	PPP5C (ENSLAFG00000006728)	CCDC8 (ENSLAFG00000003049)	ENSLAFG00000030061	ENSLAFG00000029507	ENSLAFG00000009288
Hyrax	MODERN SPECIES	11839																NANOS2 (ENSPCAG00000005087) ##22
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245
Diprotodontia	ANCESTRAL SPECIES	58	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245
Diprotodontia_a	ANCESTRAL SPECIES	56	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006	ENSGT00940000171396	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1158	ENSVURG00010010327	ENSVURG00010007823	ENSVURG00010006016	ENSVURG00010005880	ENSVURG00010005864	ENSVURG00010005861	ENSVURG00010005854	ENSVURG00010004809	ENSVURG00010004727	ENSVURG00010004291	ENSVURG00010004245	ENSVURG00010004241	ENSVURG00010004231	ENSVURG00010004226	ENSVURG00010004223	ENSVURG00010004212 ##22	ENSVURG00010004210	ENSVURG00010004203	ENSVURG00010004196	ENSVURG00010004161	ENSVURG00010004141	ENSVURG00010004126	ENSVURG00010004121	ENSVURG00010004112	ENSVURG00010004100	ENSVURG00010004092	ENSVURG00010004074	ENSVURG00010004012	ENSVURG00010003997	ENSVURG00010003972	ENSVURG00010003964
Common wonbat	MODERN SPECIES	1158	ENSVURG00010022263	ENSVURG00010021751	ENSVURG00010021686	ENSVURG00010021679	ENSVURG00010021676	ENSVURG00010021665	ENSVURG00010021653	ENSVURG00010021638	ENSVURG00010021566	ENSVURG00010021545	ENSVURG00010021540	ENSVURG00010021538	ENSVURG00010021533	ENSVURG00010021526	ENSVURG00010021522	ENSVURG00010021516 ##22	ENSVURG00010021512	ENSVURG00010021509	ENSVURG00010021505	ENSVURG00010021491	ENSVURG00010021485	ENSVURG00010021481	ENSVURG00010021471	ENSVURG00010021465	ENSVURG00010021462	ENSVURG00010021459	ENSVURG00010021455	ENSVURG00010021450	ENSVURG00010021446	ENSVURG00010021438	ENSVURG00010021437
koala	MODERN SPECIES	398												ENSPCIG00000009953	ENSPCIG00000022769	CCDC61 (ENSPCIG00000032572)	NOVA2 (ENSPCIG00000007632)	ENSPCIG00000007637 ##22	ENSPCIG00000036648	ENSPCIG00000007640	IRF2BP1 (ENSPCIG00000007642)	FOXA3 (ENSPCIG00000007644)	SYMPK (ENSPCIG00000024476)	RSPH6A (ENSPCIG00000024486)	DMWD (ENSPCIG00000022992)	DMPK (ENSPCIG00000022991)	SIX5 (ENSPCIG00000022990)	ENSPCIG00000022989	FBXO46 (ENSPCIG00000022988)	QPCTL (ENSPCIG00000022987)	SNRPD2 (ENSPCIG00000022986)	GIPR (ENSPCIG00000022980)	EML2 (ENSPCIG00000022971)
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000028119	ENSSHAG00000004128	ENSSHAG00000003533	ENSSHAG00000024489	ENSSHAG00000025662	ENSSHAG00000028193	ENSSHAG00000022799	ENSSHAG00000016613	ENSSHAG00000023061	ENSSHAG00000029336	ENSSHAG00000021410	ENSSHAG00000027850	ENSSHAG00000016916	CCDC61 (ENSSHAG00000023008)	NOVA2 (ENSSHAG00000025441)	NANOS2 (ENSSHAG00000017034) ##22	ENSSHAG00000028617	SYMPK (ENSSHAG00000003139)	RSPH6A (ENSSHAG00000001287)	DMWD (ENSSHAG00000000776)	DMPK (ENSSHAG00000000724)	SIX5 (ENSSHAG00000024498)	ENSSHAG00000001754	ENSSHAG00000028308	ENSSHAG00000023843	ENSSHAG00000029129	GIPR (ENSSHAG00000030736)	EML2 (ENSSHAG00000002041)	VASP (ENSSHAG00000003369)	RTN2 (ENSSHAG00000003830)	FOSB (ENSSHAG00000032198)
Opossum	MODERN SPECIES	3	DNAJC11 (ENSMODG00000005908)	ENSMODG00000005844	ENSMODG00000047896	ENSMODG00000005770	ENSMODG00000005802	UTS2 (ENSMODG00000047454)	ENSMODG00000017706	ENSMODG00000020046	ENSMODG00000036417	ENSMODG00000038293	ENSMODG00000023670	ENSMODG00000021519	PGLYRP1 (ENSMODG00000021527)	ENSMODG00000021528	ENSMODG00000050472	NANOS2 (ENSMODG00000048699) ##22	MYPOP (ENSMODG00000021531)	IRF2BP1 (ENSMODG00000021532)	FOXA3 (ENSMODG00000021533)	SYMPK (ENSMODG00000021534)	ENSMODG00000021535	SIX5 (ENSMODG00000041693)	ENSMODG00000045504	FBXO46 (ENSMODG00000028665)	QPCTL (ENSMODG00000021538)	SNRPD2 (ENSMODG00000021539)	GIPR (ENSMODG00000021540)	ENSMODG00000044027	EML2 (ENSMODG00000021541)	GPR4 (ENSMODG00000023661)	OPA3 (ENSMODG00000021542)
Platypus	MODERN SPECIES	8	KCNE2 (ENSOANG00000002441)	ENSOANG00000043858	ATP5PO (ENSOANG00000002438)	ITSN1 (ENSOANG00000002436)	ENSOANG00000036217	DONSON (ENSOANG00000002434)	SON (ENSOANG00000049085)	GART (ENSOANG00000002432)	ENSOANG00000002431	DNAJC28 (ENSOANG00000002430)	TMEM50B (ENSOANG00000002429)	ENSOANG00000002428	ENSOANG00000002426	ENSOANG00000041247	OLIG2 (ENSOANG00000047817)	ENSOANG00000048440 ##22	USP25 (ENSOANG00000002421)	ENSOANG00000006019	BTG3 (ENSOANG00000029686)	C21orf91 (ENSOANG00000044246)	CHODL (ENSOANG00000005591)	TMPRSS15 (ENSOANG00000005588)	NCAM2 (ENSOANG00000005586)	ENSOANG00000043403	ENSOANG00000049664	GABPA (ENSOANG00000044948)	APP (ENSOANG00000043940)	ENSOANG00000048919	ADAMTS1 (ENSOANG00000047416)	ADAMTS5 (ENSOANG00000047716)	ENSOANG00000038448
Sauria	ANCESTRAL SPECIES	54															ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000167604	ENSGT00940000161745	ENSGT00940000158785
Lepidosauria	ANCESTRAL SPECIES	58															ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000167604	ENSGT00940000161745	ENSGT00940000158785
Episquamata	ANCESTRAL SPECIES	7	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000167604	ENSGT00940000161745.d
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000161745.c
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	2	OLFM4 (ENSACAG00000000380)	ENSACAG00000023618	ENSACAG00000044405	ENSACAG00000040354	ENSACAG00000043009	ENSACAG00000037367	ENSACAG00000036857	ENSACAG00000045251	ENSACAG00000036672	ENSACAG00000037204	ENSACAG00000035957	ENSACAG00000041857	ENSACAG00000035221	PCDH17 (ENSACAG00000000482)	ENSACAG00000041149	ENSACAG00000038651 ##22	DIAPH3 (ENSACAG00000004603)	ENSACAG00000034987	TDRD3 (ENSACAG00000004923)	ENSACAG00000044962	PCDH20 (ENSACAG00000004968)	ENSACAG00000041211	ENSACAG00000034751	ENSACAG00000042643	ENSACAG00000041855	ENSACAG00000040317	ENSACAG00000004984	ENSACAG00000042714	ENSACAG00000035830	ENSACAG00000042557	ENSACAG00000039680 ##22
Lizard	MODERN SPECIES	807	ENSACAG00000036876	ENSACAG00000037754	ENSACAG00000041563	ENSACAG00000029435	PAM (ENSACAG00000006978)	ENSACAG00000041027	ENSACAG00000036266	ENSACAG00000007110	PPIP5K2 (ENSACAG00000007146)	MACIR (ENSACAG00000006723)	ENSACAG00000006727	NUDT12 (ENSACAG00000006752)	ENSACAG00000039257	ENSACAG00000035909	ENSACAG00000039515	ENSACAG00000025505 ##22	ENSACAG00000043281	EFNA5 (ENSACAG00000006783)	ENSACAG00000036071	FBXL17 (ENSACAG00000006821)	ENSACAG00000034891	ENSACAG00000040919	FER (ENSACAG00000006839)	ENSACAG00000041988	ENSACAG00000037215	ENSACAG00000038267	ENSACAG00000044727	ENSACAG00000006938	MAN2A1 (ENSACAG00000006965)	ENSACAG00000040075	ENSACAG00000037949
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	5	ENSACAG00000012388	POLR1A (ENSACAG00000012141)	ENSACAG00000037259	PTCD3 (ENSACAG00000011938)	IMMT (ENSACAG00000011776)	MRPL35 (ENSACAG00000025298)	REEP1 (ENSACAG00000011691)	CHMP3 (ENSACAG00000029575)	RNF103 (ENSACAG00000041652)	RMND5A (ENSACAG00000011511)	CD8A (ENSACAG00000011502)	ENSACAG00000021013	AREG (ENSACAG00000029391)	ENSACAG00000011452	MTHFD2L (ENSACAG00000011391)	ENSACAG00000041651 ##22	ENSACAG00000035635	ENSACAG00000011145	ENSACAG00000045577	ENSACAG00000002361	ENSACAG00000028914	ENSACAG00000029284	ENSACAG00000028797	ENSACAG00000028470	ENSACAG00000011105	ENSACAG00000029588	ENSACAG00000038215	ENSACAG00000002353	RPIA (ENSACAG00000036198)	EIF2AK3 (ENSACAG00000002119)	ENSACAG00000008418
Lizard	MODERN SPECIES	1	ENSACAG00000017699	ENSACAG00000043214	ENSACAG00000041325	ENSACAG00000035607	LINGO2 (ENSACAG00000010691)	ENSACAG00000036679	ENSACAG00000038569	ENSACAG00000035059	C9orf72 (ENSACAG00000010697)	MOB3B (ENSACAG00000010761)	ENSACAG00000042909	ENSACAG00000010781	ENSACAG00000010843	ENSACAG00000011011	ENSACAG00000035468	ENSACAG00000038543 ##22	ENSACAG00000012697	ENSACAG00000039566	ENSACAG00000013485	ENSACAG00000013441	AGAP2 (ENSACAG00000013313)	ENSACAG00000044688	TSPAN31 (ENSACAG00000042848)	ENSACAG00000041945	CDK4 (ENSACAG00000044311)	MARCHF9 (ENSACAG00000013196)	ENSACAG00000038466	CYP27B1 (ENSACAG00000013105)	METTL1 (ENSACAG00000013090)	EEF1AKMT3 (ENSACAG00000035428)	TSFM (ENSACAG00000013044)
Lizard	MODERN SPECIES	1	ENSACAG00000045311	CKS2 (ENSACAG00000016581)	SHC3 (ENSACAG00000026454)	ENSACAG00000043143	S1PR3 (ENSACAG00000016536)	NXNL2 (ENSACAG00000038268)	spin1 (ENSACAG00000036884)	ENSACAG00000042793	ENSACAG00000016480	ENSACAG00000044283	ENSACAG00000016475	ENSACAG00000040693	ENSACAG00000016407	ENSACAG00000043313	ENSACAG00000041626	ENSACAG00000044940 ##22	ENSACAG00000044846	ENSACAG00000012700	ENSACAG00000012757	ENSACAG00000012758	PRXL2C (ENSACAG00000012762)	ENSACAG00000012788	ENSACAG00000038679	HABP4 (ENSACAG00000012890)	ZNF367 (ENSACAG00000012929)	SLC35D2 (ENSACAG00000037323)	HSD17B3 (ENSACAG00000038601)	ENSACAG00000012947	ENSACAG00000039786	PTCH1 (ENSACAG00000012983)	ENSACAG00000039829
Lizard	DUPLICATION
Lizard	MODERN SPECIES	3	TSHZ1 (ENSACAG00000042445)	PTGR3 (ENSACAG00000005316)	ENSACAG00000042708	ENSACAG00000023951	ENSACAG00000044218	CNDP1 (ENSACAG00000003637)	CNDP2 (ENSACAG00000003653)	DIPK1C (ENSACAG00000003723)	C18orf63 (ENSACAG00000003727)	CYB5A (ENSACAG00000034676)	TIMM21 (ENSACAG00000003778)	FBXO15 (ENSACAG00000003780)	ENSACAG00000042139	NETO1 (ENSACAG00000003789)	CBLN2 (ENSACAG00000003828)	ENSACAG00000042376 ##22	ENSACAG00000045415	RTTN (ENSACAG00000011576)	CD226 (ENSACAG00000011729)	ENSACAG00000039125	ENSACAG00000044225	DOK6 (ENSACAG00000011732)	ENSACAG00000022209	TMX3 (ENSACAG00000011829)	DSEL (ENSACAG00000012451)	ENSACAG00000039450	ENSACAG00000037959	CDH19 (ENSACAG00000012459)	ENSACAG00000041748	CDH7 (ENSACAG00000012808)	ENSACAG00000043439 ##22
Lizard	MODERN SPECIES	2	ENSACAG00000038651 ##22	DIAPH3 (ENSACAG00000004603)	ENSACAG00000034987	TDRD3 (ENSACAG00000004923)	ENSACAG00000044962	PCDH20 (ENSACAG00000004968)	ENSACAG00000041211	ENSACAG00000034751	ENSACAG00000042643	ENSACAG00000041855	ENSACAG00000040317	ENSACAG00000004984	ENSACAG00000042714	ENSACAG00000035830	ENSACAG00000042557	ENSACAG00000039680 ##22	ENSACAG00000039939	ENSACAG00000036526	KLHL1 (ENSACAG00000004991)	ENSACAG00000040815	ENSACAG00000034954	ENSACAG00000036140 ##22	ENSACAG00000000465	ENSACAG00000035161	ENSACAG00000045284	ENSACAG00000036663	ENSACAG00000034989	ENSACAG00000037377	ENSACAG00000040714	ENSACAG00000036026	GPC6 (ENSACAG00000002715)
Lizard	MODERN SPECIES	980												ENSACAG00000002088	ENSACAG00000006400	ENSACAG00000045099	ENSACAG00000043472	ENSACAG00000027983 ##22
Lizard	MODERN SPECIES	829															ENSACAG00000010673	ENSACAG00000022207 ##22	ENSACAG00000041649	LRRTM3 (ENSACAG00000010660)	ENSACAG00000010620	ENSACAG00000010617	DNAJC12 (ENSACAG00000037639)	ENSACAG00000041427	ENSACAG00000043601	HERC4 (ENSACAG00000010493)	MYPN (ENSACAG00000010443)	ATOH7 (ENSACAG00000010441)	ENSACAG00000010420	ENSACAG00000010365	ENSACAG00000010301	RUFY2 (ENSACAG00000010193)	DNA2 (ENSACAG00000010137)
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1	METTL23 (ENSACAG00000008533)	ENSACAG00000008553	MFSD11 (ENSACAG00000008577)	ENSACAG00000016117	SEC14L1 (ENSACAG00000016145)	ENSACAG00000044092	ENSACAG00000016196	ENSACAG00000037560	ENSACAG00000016198	ENSACAG00000043845	ENSACAG00000041636	ENSACAG00000039630	ENSACAG00000011248	UTS2R (ENSACAG00000011416)	ENSACAG00000044548	ENSACAG00000026771 ##22	ENSACAG00000016872	ENSACAG00000037066	OGFOD3 (ENSACAG00000016853)	ENSACAG00000041492	ENSACAG00000040967	CYBC1 (ENSACAG00000016885)	NARF (ENSACAG00000016894)	DHRS7C (ENSACAG00000016930)	GSG1L2 (ENSACAG00000045581)	GLP2R (ENSACAG00000016945)	ENSACAG00000039639	GAS7 (ENSACAG00000016997)	ENSACAG00000037060	ENSACAG00000017325	ENSACAG00000043392
Lizard	MODERN SPECIES		ENSACAG00000039494	ENSACAG00000045279	ENSACAG00000041181	ENSACAG00000038551	RNGTT (ENSACAG00000014716)	PNRC1 (ENSACAG00000014712)	ENSACAG00000045104	SRSF12 (ENSACAG00000032353)	PM20D2 (ENSACAG00000014701)	GABRR1 (ENSACAG00000014633)	GABRR2 (ENSACAG00000025744)	UBE2J1 (ENSACAG00000014560)	ENSACAG00000043120	RRAGD (ENSACAG00000014508)	ENSACAG00000035716	ENSACAG00000014502 ##22	ANKRD6 (ENSACAG00000014451)	LYRM2 (ENSACAG00000014449)	MDN1 (ENSACAG00000014404)	CASP8AP2 (ENSACAG00000014391)	GJA10 (ENSACAG00000014390)	BACH2 (ENSACAG00000014366)	MAP3K7 (ENSACAG00000008524)	ENSACAG00000042473	ENSACAG00000044317	ENSACAG00000043362	ENSACAG00000043109	FHL5 (ENSACAG00000041735)	GPR63 (ENSACAG00000002117)	NDUFAF4 (ENSACAG00000002121)	ENSACAG00000039665
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	4	ENSACAG00000036014	DENND5B (ENSACAG00000012799)	etfbkmt (ENSACAG00000036000)	AMN1 (ENSACAG00000039215)	ENSACAG00000023506	ENSACAG00000036427	ENSACAG00000041501	BICD1 (ENSACAG00000012712)	ENSACAG00000043163	FGD4 (ENSACAG00000012624)	ENSACAG00000012501	DNM1L (ENSACAG00000012376)	YARS2 (ENSACAG00000012351)	PKP2 (ENSACAG00000012265)	ENSACAG00000043350	ENSACAG00000042035 ##22	RERGL (ENSACAG00000037523)	ENSACAG00000035758	ENSACAG00000044646	ENSACAG00000029483	CAPZA3 (ENSACAG00000017618)	ENSACAG00000017592	ENSACAG00000038816	ENSACAG00000037774	ENSACAG00000036312	ENSACAG00000044659	PLEKHA5 (ENSACAG00000017560)	AEBP2 (ENSACAG00000017531)	PDE3A (ENSACAG00000017514)	SLCO1C1 (ENSACAG00000017487)	ENSACAG00000017486
Lizard	MODERN SPECIES	1027				S1PR2 (ENSACAG00000004177)	ENSACAG00000043570	DNMT1 (ENSACAG00000003948)	EIF3G (ENSACAG00000003880)	ENSACAG00000035748	P2RY11 (ENSACAG00000028164)	PPAN (ENSACAG00000003838)	ENSACAG00000003786	ANGPTL6 (ENSACAG00000003753)	ENSACAG00000035757	SHFL (ENSACAG00000003734)	GSK3B (ENSACAG00000003655)	ENSACAG00000027212 ##22	CFAP91 (ENSACAG00000003580)	ENSACAG00000026666	POPDC2 (ENSACAG00000003557)	PLA1A (ENSACAG00000003503)	ENSACAG00000037415	ENSACAG00000003402	ENSACAG00000043458
Lizard	MODERN SPECIES	2	ENSACAG00000041273	VGLL3 (ENSACAG00000013664)	ENSACAG00000035767	ENSACAG00000041964	ENSACAG00000044120	ENSACAG00000044180	CADM2 (ENSACAG00000013590)	ENSACAG00000042748	ENSACAG00000038175	ENSACAG00000043402	ENSACAG00000041385	ENSACAG00000038574	ENSACAG00000039962	ENSACAG00000045019	ENSACAG00000044266	ENSACAG00000040198 ##22	ENSACAG00000045505	ENSACAG00000040606	ENSACAG00000037202	ENSACAG00000026101	ENSACAG00000036353	ENSACAG00000037563	ENSACAG00000040994	ENSACAG00000042905	ENSACAG00000002172	ENSACAG00000036177	ENSACAG00000044428	ENSACAG00000044355	ENSACAG00000044700	ENSACAG00000044726	ENSACAG00000044640
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	961														ENSACAG00000041488	ENSACAG00000043987	ENSACAG00000026679 ##22
Lizard	MODERN SPECIES	676																ENSACAG00000035291 ##22
Lizard	MODERN SPECIES	3	ZFYVE9 (ENSACAG00000008107)	BTF3L4 (ENSACAG00000038457)	TXNDC12 (ENSACAG00000008073)	RAB3B (ENSACAG00000043816)	ENSACAG00000007741	OSBPL9 (ENSACAG00000007574)	ENSACAG00000022598	EPS15 (ENSACAG00000007433)	RNF11 (ENSACAG00000007410)	CDKN2C (ENSACAG00000039282)	FAF1 (ENSACAG00000007308)	DMRTA2 (ENSACAG00000007289)	ENSACAG00000042237	ELAVL4 (ENSACAG00000004527)	ENSACAG00000037944	ENSACAG00000043345 ##22	ENSACAG00000035349	ENSACAG00000041940	ENSACAG00000034569	ENSACAG00000001833	ENSACAG00000034956	ENSACAG00000001870	ENSACAG00000001932	ENSACAG00000001951	ENSACAG00000029353	ENSACAG00000028412	ENSACAG00000001984	FAAH (ENSACAG00000002040)	NSUN4 (ENSACAG00000043184)	ENSACAG00000002194	LRRC41 (ENSACAG00000002210)
Lizard	MODERN SPECIES	4	ppp2r2c (ENSACAG00000041673)	SH3BP2 (ENSACAG00000005190)	ADD1 (ENSACAG00000005207)	ENSACAG00000005264	NOP14 (ENSACAG00000005288)	HTT (ENSACAG00000005400)	MED28 (ENSACAG00000011107)	FAM184B (ENSACAG00000011063)	ENSACAG00000044171	NCAPG (ENSACAG00000002066)	ENSACAG00000042769	ENSACAG00000044681	SLIT2 (ENSACAG00000001304)	PACRGL (ENSACAG00000001294)	ENSACAG00000040215	ENSACAG00000044078 ##22	ENSACAG00000038554	KCNIP4 (ENSACAG00000001279)	ENSACAG00000039647	ENSACAG00000035774	ADGRA3 (ENSACAG00000001047)	GBA3 (ENSACAG00000001008)	PPARGC1A (ENSACAG00000000741)	ENSACAG00000035171	ENSACAG00000028853	ENSACAG00000041740	DHX15 (ENSACAG00000000412)	ENSACAG00000000410	CCDC149 (ENSACAG00000000382)	KLHL5 (ENSACAG00000007412)	WDR19 (ENSACAG00000007508)
Lizard	MODERN SPECIES		IGHMBP2 (ENSACAG00000013702)	ENSACAG00000039820	ENSACAG00000013607	PTDSS2 (ENSACAG00000013572)	ANO9 (ENSACAG00000013532)	SIGIRR (ENSACAG00000013492)	PKP3 (ENSACAG00000013428)	B4GALNT4 (ENSACAG00000013381)	ENSACAG00000036192	ENSACAG00000039555	ENSACAG00000039712	ENSACAG00000043373	ENSACAG00000043961	ENSACAG00000022410	IFITM5 (ENSACAG00000017472)	ENSACAG00000035954 ##22	PGGHG (ENSACAG00000017476)	ENSACAG00000017483	ENSACAG00000025687	ENSACAG00000017489	ENSACAG00000044844	ENSACAG00000017495	ENSACAG00000043981	ENSACAG00000017497	SIRT3 (ENSACAG00000017510)	RIC8A (ENSACAG00000017513)	BET1L (ENSACAG00000038988)	ODF3 (ENSACAG00000017539)	ENSACAG00000034768	ESYT3 (ENSACAG00000009524)	ENSACAG00000009607
Lizard	DUPLICATION
Lizard	MODERN SPECIES	2	KLHL15 (ENSACAG00000007405)	ENSACAG00000007416	ENSACAG00000043970	ENSACAG00000043901	ENSACAG00000007288	ENSACAG00000042471	ENSACAG00000007227	ENSACAG00000036930	PDK3 (ENSACAG00000007063)	PCYT1B (ENSACAG00000007032)	POLA1 (ENSACAG00000008221)	ENSACAG00000040996	ENSACAG00000035746	ENSACAG00000035987	ENSACAG00000013643	ENSACAG00000039089 ##22	ENSACAG00000038953	ENSACAG00000036761	ENSACAG00000028543	ENSACAG00000037927	ENSACAG00000043216	ENSACAG00000041185	ENSACAG00000038078	TAB3 (ENSACAG00000007257)	ENSACAG00000035342	ENSACAG00000007235	ENSACAG00000036075	TASL (ENSACAG00000007229)	ENSACAG00000040504	NR0B1 (ENSACAG00000043663)	ENSACAG00000041209
Lizard	MODERN SPECIES	2	ENSACAG00000034834	GALNT7 (ENSACAG00000005432)	HMGB2 (ENSACAG00000005480)	SAP30 (ENSACAG00000005497)	SCRG1 (ENSACAG00000041105)	HAND2 (ENSACAG00000005500)	ENSACAG00000035996	FBXO8 (ENSACAG00000005520)	CEP44 (ENSACAG00000005564)	ENSACAG00000037180	ENSACAG00000036397	HPGD (ENSACAG00000038052)	ENSACAG00000035451	GLRA3 (ENSACAG00000005650)	ENSACAG00000038146	ENSACAG00000037671 ##22	ENSACAG00000038368	ENSACAG00000042572	ENSACAG00000004221	TMEM50B (ENSACAG00000004223)	DNAJC28 (ENSACAG00000004229)	ENSACAG00000004235	ENSACAG00000004248	ENSACAG00000004438	ENSACAG00000004681	DONSON (ENSACAG00000004693)	ENSACAG00000004694	ITSN1 (ENSACAG00000004697)	ATP5PO (ENSACAG00000005042)	ENSACAG00000042850	SLC5A3 (ENSACAG00000042146)
Lizard	MODERN SPECIES	2	UROS (ENSACAG00000000920)	EDRF1 (ENSACAG00000000994)	TEX36 (ENSACAG00000001232)	CTBP2 (ENSACAG00000014547)	ZRANB1 (ENSACAG00000014485)	ABRAXAS2 (ENSACAG00000014423)	eef1akmt2 (ENSACAG00000038120)	FAM53B (ENSACAG00000014398)	ENSACAG00000044309	ENSACAG00000043228	LHPP (ENSACAG00000017564)	ENSACAG00000022361	OAT (ENSACAG00000017543)	ENSACAG00000040270	ENSACAG00000039920	ENSACAG00000040555 ##22	CHST15 (ENSACAG00000017532)	CPXM2 (ENSACAG00000017504)	GPR26 (ENSACAG00000017503)	BUB3 (ENSACAG00000017494)	HMX2 (ENSACAG00000017493)	HMX3 (ENSACAG00000017490)	ACADSB (ENSACAG00000017471)	IKZF5 (ENSACAG00000040076)	PSTK (ENSACAG00000017467)	ENSACAG00000017452	ENSACAG00000042520	C10orf88 (ENSACAG00000017448)	ENSACAG00000017438	ENSACAG00000043412	ENSACAG00000021034
Lizard	MODERN SPECIES	5	GOLGA4 (ENSACAG00000009896)	ENSACAG00000009967	MLH1 (ENSACAG00000010048)	TRANK1 (ENSACAG00000010154)	ENSACAG00000042480	DCLK3 (ENSACAG00000010167)	ENSACAG00000039157	ENSACAG00000034813	STAC (ENSACAG00000010185)	ENSACAG00000038783	ENSACAG00000043900	ARPP21 (ENSACAG00000010218)	ENSACAG00000037911	ENSACAG00000043146	ENSACAG00000042354	ENSACAG00000044722 ##22	ENSACAG00000043675	ENSACAG00000041970	ENSACAG00000041538	ENSACAG00000027751	ENSACAG00000038739	ENSACAG00000000311	ENSACAG00000044999	NPHP3 (ENSACAG00000000328)	UBA5 (ENSACAG00000000484)	ACKR4 (ENSACAG00000000845)	ACAD11 (ENSACAG00000000712)	ENSACAG00000040893	DNAJC13 (ENSACAG00000000850)	ENSACAG00000036315	ENSACAG00000038984
Lizard	MODERN SPECIES	1	ABTB1 (ENSACAG00000007369)	PODXL2 (ENSACAG00000007435)	MCM2 (ENSACAG00000007455)	TPRA1 (ENSACAG00000007501)	ENSACAG00000007543	ENSACAG00000041400	ENSACAG00000034913	ENSACAG00000041051	ENSACAG00000040888	ENSACAG00000007544	ENSACAG00000042825	ENSACAG00000038087	ENSACAG00000043029	ENSACAG00000041924	ENSACAG00000035770	ENSACAG00000044615 ##22	ENSACAG00000014005	CHST13 (ENSACAG00000040038)	SLC41A3 (ENSACAG00000043911)	ENSACAG00000013807	CFAP100 (ENSACAG00000013872)	ENSACAG00000013744	ENSACAG00000013682	CHCHD4 (ENSACAG00000013659)	TMEM43 (ENSACAG00000013570)	XPC (ENSACAG00000013515)	LSM3 (ENSACAG00000013503)	ENSACAG00000040167	ENSACAG00000038707	ENSACAG00000037760	SLC6A6 (ENSACAG00000013426)
Lizard	MODERN SPECIES	4	ENSACAG00000035171	ENSACAG00000028853	ENSACAG00000041740	DHX15 (ENSACAG00000000412)	ENSACAG00000000410	CCDC149 (ENSACAG00000000382)	KLHL5 (ENSACAG00000007412)	WDR19 (ENSACAG00000007508)	RFC1 (ENSACAG00000007579)	KLB (ENSACAG00000007623)	ENSACAG00000044432	GRAMD4 (ENSACAG00000004218)	CERK (ENSACAG00000004135)	TBC1D22A (ENSACAG00000004028)	ENSACAG00000045555	ENSACAG00000045323 ##22	ENSACAG00000043588	ENSACAG00000044714	ENSACAG00000040433	ENSACAG00000034745	TAFA5 (ENSACAG00000041810)	ENSACAG00000038723	ENSACAG00000042835 ##22	WNT16 (ENSACAG00000006979)	FAM3C (ENSACAG00000039015)	PTPRZ1 (ENSACAG00000006803)	AASS (ENSACAG00000006703)	FEZF1 (ENSACAG00000037701)	ENSACAG00000038622	ENSACAG00000037678	CADPS2 (ENSACAG00000006571)
Lizard	MODERN SPECIES	2	ENSACAG00000021113	GRIK1 (ENSACAG00000002026)	BACH1 (ENSACAG00000001974)	ENSACAG00000001970	ENSACAG00000035443	ENSACAG00000041537	CCT8 (ENSACAG00000001784)	USP16 (ENSACAG00000001581)	RWDD2B (ENSACAG00000001560)	LTN1 (ENSACAG00000001346)	ENSACAG00000001341	ENSACAG00000044942	ENSACAG00000040281	ENSACAG00000041956 ##22	ENSACAG00000035523	ENSACAG00000035707 ##22	ADAMTS5 (ENSACAG00000014354)	ADAMTS1 (ENSACAG00000014530)	APP (ENSACAG00000014691)	ENSACAG00000042296	ATP5PF (ENSACAG00000014895)	GABPA (ENSACAG00000014800)	JAM2 (ENSACAG00000014900)	MRPL39 (ENSACAG00000014940)	ENSACAG00000040536	ENSACAG00000040786	ENSACAG00000035011	ENSACAG00000044648	ENSACAG00000029197	ENSACAG00000043422	ENSACAG00000041251
Lizard	MODERN SPECIES	1	ENSACAG00000022592	MYL6 (ENSACAG00000007876)	SMARCC2 (ENSACAG00000007714)	ENSACAG00000036261	RNF41 (ENSACAG00000007679)	NABP2 (ENSACAG00000007650)	ENSACAG00000007638	CS (ENSACAG00000007556)	COQ10A (ENSACAG00000007539)	ANKRD52 (ENSACAG00000007304)	SLC39A5 (ENSACAG00000007284)	ENSACAG00000011728	PAN2 (ENSACAG00000007067)	STAT2 (ENSACAG00000023449)	APOF (ENSACAG00000040823)	ENSACAG00000043043 ##22	TIMELESS (ENSACAG00000016465)	ENSACAG00000016525	ENSACAG00000029542	SPRYD4 (ENSACAG00000016562)	GLS2 (ENSACAG00000016563)	RBMS2 (ENSACAG00000016623)	BAZ2A (ENSACAG00000016700)	ATP5F1B (ENSACAG00000016752)	ATG101 (ENSACAG00000042228)	NR4A1 (ENSACAG00000016775)	TAMALIN (ENSACAG00000016817)	ACVR1B (ENSACAG00000016836)	ENSACAG00000016876	ANKRD33 (ENSACAG00000016915)	FIGNL2 (ENSACAG00000016922)
Lizard	MODERN SPECIES	3	EMILIN2 (ENSACAG00000009078)	ENSACAG00000008882	ENSACAG00000038763	ENSACAG00000043353	ENSACAG00000013429	ENSACAG00000037756	PSMG2 (ENSACAG00000013408)	PTPN2 (ENSACAG00000013333)	SEH1L (ENSACAG00000013294)	CEP192 (ENSACAG00000013197)	LDLRAD4 (ENSACAG00000013183)	ENSACAG00000034999	FAM210A (ENSACAG00000013169)	RNMT (ENSACAG00000028611)	MC2R (ENSACAG00000013103)	ENSACAG00000043439 ##22	CDH7 (ENSACAG00000012808)	ENSACAG00000041748	CDH19 (ENSACAG00000012459)	ENSACAG00000037959	ENSACAG00000039450	DSEL (ENSACAG00000012451)	TMX3 (ENSACAG00000011829)	ENSACAG00000022209	DOK6 (ENSACAG00000011732)	ENSACAG00000044225	ENSACAG00000039125	CD226 (ENSACAG00000011729)	RTTN (ENSACAG00000011576)	ENSACAG00000045415	ENSACAG00000042376 ##22
Lizard	MODERN SPECIES	2	ENSACAG00000043030	ABCC4 (ENSACAG00000002058)	SOX21 (ENSACAG00000002492)	GPR180 (ENSACAG00000002500)	TGDS (ENSACAG00000002532)	ENSACAG00000002630	GPC6 (ENSACAG00000002715)	ENSACAG00000036026	ENSACAG00000040714	ENSACAG00000037377	ENSACAG00000034989	ENSACAG00000036663	ENSACAG00000045284	ENSACAG00000035161	ENSACAG00000000465	ENSACAG00000036140 ##22	ENSACAG00000034954	ENSACAG00000040815	KLHL1 (ENSACAG00000004991)	ENSACAG00000036526	ENSACAG00000039939	ENSACAG00000039680 ##22	ENSACAG00000042557	ENSACAG00000035830	ENSACAG00000042714	ENSACAG00000004984	ENSACAG00000040317	ENSACAG00000041855	ENSACAG00000042643	ENSACAG00000034751	ENSACAG00000041211
Lizard	MODERN SPECIES	4	WDR19 (ENSACAG00000007508)	RFC1 (ENSACAG00000007579)	KLB (ENSACAG00000007623)	ENSACAG00000044432	GRAMD4 (ENSACAG00000004218)	CERK (ENSACAG00000004135)	TBC1D22A (ENSACAG00000004028)	ENSACAG00000045555	ENSACAG00000045323 ##22	ENSACAG00000043588	ENSACAG00000044714	ENSACAG00000040433	ENSACAG00000034745	TAFA5 (ENSACAG00000041810)	ENSACAG00000038723	ENSACAG00000042835 ##22	WNT16 (ENSACAG00000006979)	FAM3C (ENSACAG00000039015)	PTPRZ1 (ENSACAG00000006803)	AASS (ENSACAG00000006703)	FEZF1 (ENSACAG00000037701)	ENSACAG00000038622	ENSACAG00000037678	CADPS2 (ENSACAG00000006571)	SLC13A1 (ENSACAG00000006513)	ENSACAG00000042703	ENSACAG00000006501	ENSACAG00000035667	IQUB (ENSACAG00000000747)	NDUFA5 (ENSACAG00000038064)	ASB15 (ENSACAG00000000851)
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	2	NPFFR1 (ENSACAG00000001549)	ENSACAG00000044336	LRRC20 (ENSACAG00000008384)	EIF4EBP2 (ENSACAG00000008388)	NODAL (ENSACAG00000008399)	PALD1 (ENSACAG00000008406)	ENSACAG00000041969	ADAMTS14 (ENSACAG00000008463)	ENSACAG00000008632	ENSACAG00000044956	TBATA (ENSACAG00000008733)	SGPL1 (ENSACAG00000008740)	PCBD1 (ENSACAG00000008843)	ENSACAG00000044964	ENSACAG00000035006	ENSACAG00000035798 ##22	ENSACAG00000036877	ENSACAG00000017782	ENSACAG00000017786	CHST3 (ENSACAG00000017793)	PSAP (ENSACAG00000016414)	ENSACAG00000035396	VSIR (ENSACAG00000016392)	C10orf105 (ENSACAG00000028208)	CDH23 (ENSACAG00000028908)	ENSACAG00000041505	ENSACAG00000037014	ENSACAG00000038634	SLC29A3 (ENSACAG00000015996)	ENSACAG00000043828	UNC5B (ENSACAG00000015868)
Lizard	MODERN SPECIES	2	ENSACAG00000029197	ENSACAG00000044648	ENSACAG00000035011	ENSACAG00000040786	ENSACAG00000040536	MRPL39 (ENSACAG00000014940)	JAM2 (ENSACAG00000014900)	GABPA (ENSACAG00000014800)	ATP5PF (ENSACAG00000014895)	ENSACAG00000042296	APP (ENSACAG00000014691)	ADAMTS1 (ENSACAG00000014530)	ADAMTS5 (ENSACAG00000014354)	ENSACAG00000035707 ##22	ENSACAG00000035523	ENSACAG00000041956 ##22	ENSACAG00000040281	ENSACAG00000044942	ENSACAG00000001341	LTN1 (ENSACAG00000001346)	RWDD2B (ENSACAG00000001560)	USP16 (ENSACAG00000001581)	CCT8 (ENSACAG00000001784)	ENSACAG00000041537	ENSACAG00000035443	ENSACAG00000001970	BACH1 (ENSACAG00000001974)	GRIK1 (ENSACAG00000002026)	ENSACAG00000021113	CLDN8 (ENSACAG00000002394)	ENSACAG00000040642
Lizard	MODERN SPECIES	1148									ENSACAG00000005367	ENSACAG00000005466	ENSACAG00000005470	ENSACAG00000043843	ASB8 (ENSACAG00000005535)	PFKM (ENSACAG00000005562)	SENP1 (ENSACAG00000005981)	ENSACAG00000026660 ##22	COL2A1 (ENSACAG00000006064)	ENSACAG00000006384
Lizard	MODERN SPECIES		NKAIN2 (ENSACAG00000001686)	ENSACAG00000039588	ENSACAG00000001690	ENSACAG00000038021	ENSACAG00000041787	ENSACAG00000001672	ENSACAG00000041548	CLVS2 (ENSACAG00000001621)	ENSACAG00000001619	SMPDL3A (ENSACAG00000001537)	FABP7 (ENSACAG00000036728)	PKIB (ENSACAG00000035008)	SERINC1 (ENSACAG00000001363)	HSF2 (ENSACAG00000001260)	ENSACAG00000044946	ENSACAG00000038182 ##22	GJA1 (ENSACAG00000007625)	TBC1D32 (ENSACAG00000007537)	ENSACAG00000038837	ENSACAG00000029482	ENSACAG00000035393	ENSACAG00000041765	ENSACAG00000041268	ENSACAG00000045160	ENSACAG00000042456	MAN1A1 (ENSACAG00000017718)	FAM184A (ENSACAG00000017700)	ENSACAG00000017689	ASF1A (ENSACAG00000017698)	CEP85L (ENSACAG00000017676)	PLN (ENSACAG00000017688)
Lizard	MODERN SPECIES	3	ENSACAG00000013913	LRRCC1 (ENSACAG00000013984)	E2F5 (ENSACAG00000014098)	RBIS (ENSACAG00000034905)	CA13 (ENSACAG00000014147)	ENSACAG00000009427	CA3 (ENSACAG00000024792)	ENSACAG00000042720	CA2 (ENSACAG00000009431)	ATP6V0D2 (ENSACAG00000009490)	WWP1 (ENSACAG00000009554)	RMDN1 (ENSACAG00000009774)	CPNE3 (ENSACAG00000009847)	CNGB3 (ENSACAG00000010084)	ENSACAG00000040094	ENSACAG00000041140 ##22	ENSACAG00000036329	MMP16 (ENSACAG00000010198)	RIPK2 (ENSACAG00000010239)	ENSACAG00000010295	OSGIN2 (ENSACAG00000010398)	NBN (ENSACAG00000010440)	DECR1 (ENSACAG00000010472)	CALB1 (ENSACAG00000010516)	ENSACAG00000010544	NECAB1 (ENSACAG00000010551)	C8orf88 (ENSACAG00000041066)	PIP4P2 (ENSACAG00000010606)	STK3 (ENSACAG00000016155)	KCNS2 (ENSACAG00000016151)	NIPAL2 (ENSACAG00000016142)
Lizard	MODERN SPECIES		MTR (ENSACAG00000002970)	RYR2 (ENSACAG00000003211)	ENSACAG00000037739	ENSACAG00000038442	ENSACAG00000043249	ENSACAG00000036161	CHRM3 (ENSACAG00000003639)	ENSACAG00000042334	ENSACAG00000003646	GREM2 (ENSACAG00000041541)	ENSACAG00000028807	RGS7 (ENSACAG00000003468)	ENSACAG00000003466	ENSACAG00000044583	ENSACAG00000043183	ENSACAG00000039600 ##22	ENSACAG00000041950	OPN3 (ENSACAG00000003462)	WDR64 (ENSACAG00000003432)	EXO1 (ENSACAG00000003422)	map1lc3c (ENSACAG00000043121)	PLD5 (ENSACAG00000003356)	ENSACAG00000043733	MYCT1 (ENSACAG00000005641)	VIP (ENSACAG00000005619)	FBXO5 (ENSACAG00000005635)	MTRF1L (ENSACAG00000005557)	RGS17 (ENSACAG00000005532)	ENSACAG00000045432	ENSACAG00000042018	ENSACAG00000039724
Lizard	MODERN SPECIES	813	ENSACAG00000035068	ENSACAG00000028870	ENSACAG00000041342	ENSACAG00000044047	ENSACAG00000044686	ENSACAG00000005816	ENSACAG00000036369	ENSACAG00000030268	ENSACAG00000035205	ENSACAG00000036827	ENSACAG00000035556	ENSACAG00000036821	ENSACAG00000043448	ENSACAG00000045203	ENSACAG00000041406	ENSACAG00000027196 ##22	ENSACAG00000043854	ENSACAG00000043583	ENSACAG00000038483	ENSACAG00000035463	ENSACAG00000036918
Lizard	MODERN SPECIES	2	HIKESHI (ENSACAG00000039755)	ME3 (ENSACAG00000002632)	ENSACAG00000043722	PRSS23 (ENSACAG00000002734)	FZD4 (ENSACAG00000002739)	TMEM135 (ENSACAG00000034771)	CTSC (ENSACAG00000015158)	GRM5 (ENSACAG00000015032)	TYR (ENSACAG00000014963)	ENSACAG00000044205	NOX4 (ENSACAG00000014875)	ENSACAG00000014644	ENSACAG00000037169	NAALAD2 (ENSACAG00000014471)	CHORDC1 (ENSACAG00000014370)	ENSACAG00000024003 ##22	ENSACAG00000016370	ENSACAG00000040047	ENSACAG00000038029	FAT3 (ENSACAG00000014669)	ENSACAG00000029244	ENSACAG00000044248	MTNR1B (ENSACAG00000038163)	DEUP1 (ENSACAG00000014823)	SMCO4 (ENSACAG00000014597)	CMTR2 (ENSACAG00000036088)	ENSACAG00000014591	TAF1D (ENSACAG00000014587)	C11orf54 (ENSACAG00000014533)	ENSACAG00000041938	ENSACAG00000014462
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1	TARBP2 (ENSACAG00000001100)	ENSACAG00000001048	MAP3K12 (ENSACAG00000000899)	PCBP2 (ENSACAG00000000783)	ENSACAG00000037995	AMHR2 (ENSACAG00000000671)	SP1 (ENSACAG00000000610)	SP7 (ENSACAG00000000606)	ENSACAG00000007554	ENSACAG00000039789	ENSACAG00000034938	ENSACAG00000036435	ENSACAG00000037540	enam (ENSACAG00000023309)	ambn (ENSACAG00000036385)	ENSACAG00000044724 ##22	amtn (ENSACAG00000030518)	fdc-sp (ENSACAG00000024676)	ENSACAG00000013870	ENSACAG00000014078	ENSACAG00000043403	ENSACAG00000028397	ENSACAG00000014253	ENSACAG00000014282	ENSACAG00000017192	TNFSF14 (ENSACAG00000041289)	ENSACAG00000029566	ENSACAG00000036871	ENSACAG00000015247	SLC25A23 (ENSACAG00000015342)	KHSRP (ENSACAG00000015398)
Lizard	MODERN SPECIES	3	ENSACAG00000041598	ENSACAG00000010474	ENSACAG00000037363	SEMA5A (ENSACAG00000010350)	MTRR (ENSACAG00000010211)	FASTKD3 (ENSACAG00000010201)	ENSACAG00000021000	ADCY2 (ENSACAG00000010038)	ENSACAG00000044221	TENT4A (ENSACAG00000000497)	SRD5A1 (ENSACAG00000029192)	ENSACAG00000028970	NSUN2 (ENSACAG00000000677)	VAV3 (ENSACAG00000000782)	ENSACAG00000001442	ENSACAG00000043510 ##22	ENSACAG00000042792	ENSACAG00000001468	ENSACAG00000041370	ENSACAG00000001823	RNPC3 (ENSACAG00000002029)	ENSACAG00000041944	ENSACAG00000044704	ENSACAG00000037073	ENSACAG00000039569	ENSACAG00000002998	OLFM3 (ENSACAG00000003024)	S1PR1 (ENSACAG00000044516)	ENSACAG00000003098	ENSACAG00000037207	DPH5 (ENSACAG00000003102)
Lizard	MODERN SPECIES		TBX18 (ENSACAG00000042943)	ENSACAG00000003846	ENSACAG00000003806	ENSACAG00000003790	NEK10 (ENSACAG00000013795)	SLC4A7 (ENSACAG00000013876)	EOMES (ENSACAG00000014201)	cmc1 (ENSACAG00000036306)	AZI2 (ENSACAG00000014247)	ENSACAG00000036916	ENSACAG00000039133	ENSACAG00000035793	RBMS3 (ENSACAG00000028664)	ENSACAG00000036993	TGFBR2 (ENSACAG00000014301)	ENSACAG00000011358 ##22	GADL1 (ENSACAG00000014308)	ENSACAG00000004883	ENSACAG00000035510	ENSACAG00000024140	STT3B (ENSACAG00000014453)	OSBPL10 (ENSACAG00000014540)	GPD1L (ENSACAG00000014627)	CMTM8 (ENSACAG00000029558)	ENSACAG00000024665	CMTM7 (ENSACAG00000035537)	CMTM6 (ENSACAG00000014679)	ENSACAG00000043205	DYNC1LI1 (ENSACAG00000014680)	CNOT10 (ENSACAG00000014782)	ENSACAG00000014882
Elapidae	ANCESTRAL SPECIES	9	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378.s.a.a.b	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237.b	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000161745.d
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT00940000160378.s.a.a.b.a	ENSGT01050000246816	ENSGT00940000160378.s.a.a.b.b	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237.b	ENSGT00940000180177	ENSGT00940000162237.a	ENSGT00570000080851	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000161745.d	ENSGT00940000158785
Blue-lipped sea krait	MODERN SPECIES	3486													FBXO46 (ENSLLTG00000004413)	QPCTL (ENSLLTG00000004460)	CCDC61 (ENSLLTG00000006036)	NANOS2 (ENSLLTG00000006045) ##22
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT00940000160378.s.a.a.b.a	ENSGT01050000246816	ENSGT00940000160378.s.a.a.b.b	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000180177	ENSGT00940000162237.a	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000161745.d	ENSGT00940000158785	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Mainland tiger snake	MODERN SPECIES	559															QPCTL (ENSNSUG00000017401)	NANOS2 (ENSNSUG00000017398) ##22	NOVA2 (ENSNSUG00000017397)	MYPOP (ENSNSUG00000017396)	IRF2BP1 (ENSNSUG00000017394)	ENSNSUG00000017393	SYMPK (ENSNSUG00000017317)
Laterata	ANCESTRAL SPECIES	17	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a ##22	ENSGT00940000161740	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203	ENSGT00390000017045	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00940000158292.a.e	ENSGT00570000080851	ENSGT01030000234555.a.b	ENSGT00390000017608	ENSGT00940000167604	ENSGT00940000161745.d
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000012186	ENSPMRG00000012190	ENSPMRG00000012196	ENSPMRG00000012199	SIRT2 (ENSPMRG00000012202)	NFKBIB (ENSPMRG00000012209)	ENSPMRG00000012216	ENSPMRG00000012225	ENSPMRG00000012284	ENSPMRG00000012287	ENSPMRG00000012296	ENSPMRG00000012318	FBXO46 (ENSPMRG00000012326)	QPCTL (ENSPMRG00000012336)	CCDC61 (ENSPMRG00000012345)	NANOS2 (ENSPMRG00000012351) ##22	NOVA2 (ENSPMRG00000008480)	ENSPMRG00000008493	MYPOP (ENSPMRG00000008500)	IRF2BP1 (ENSPMRG00000008505)	ENSPMRG00000008509	SYMPK (ENSPMRG00000008517)	DMWD (ENSPMRG00000008538)	ENSPMRG00000008551	ENSPMRG00000008574	ENSPMRG00000008581	ENSPMRG00000008593	ENSPMRG00000008612	ENSPMRG00000008617	ENSPMRG00000008624	ENSPMRG00000008628
Argentine black and white tegu	MODERN SPECIES	59	ENSSMRG00000015082	LGALS4 (ENSSMRG00000015083)	ECH1 (ENSSMRG00000015084)	HNRNPL (ENSSMRG00000015085)	ENSSMRG00000015086	ENSSMRG00000015087	ENSSMRG00000015246	SIRT2 (ENSSMRG00000015247)	NFKBIB (ENSSMRG00000015249)	ENSSMRG00000015251	SARS2 (ENSSMRG00000015252)	ENSSMRG00000015255	FBXO46 (ENSSMRG00000015257)	QPCTL (ENSSMRG00000015258)	CCDC61 (ENSSMRG00000015259)	NANOS2 (ENSSMRG00000015261) ##22	NOVA2 (ENSSMRG00000015264)	MYPOP (ENSSMRG00000015265)	IRF2BP1 (ENSSMRG00000015268)	ENSSMRG00000015300	SYMPK (ENSSMRG00000015301)	DMWD (ENSSMRG00000015307)	DMPK (ENSSMRG00000015308)	SIX5 (ENSSMRG00000015310)	ENSSMRG00000015311	ENSSMRG00000015316	SNRPD2 (ENSSMRG00000015318)	ENSSMRG00000015320	HIF3A (ENSSMRG00000015322)	PPP5C (ENSSMRG00000015324)	ENSSMRG00000015326
tuatara	MODERN SPECIES	1028				LGALS4 (ENSSPUG00000002038)	HNRNPL (ENSSPUG00000002177)	ARF6 (ENSSPUG00000002206)	ENSSPUG00000002211	ENSSPUG00000002224	NFKBIB (ENSSPUG00000002266)	ENSSPUG00000002304	SARS2 (ENSSPUG00000002348)	FBXO46 (ENSSPUG00000002528)	ENSSPUG00000002531	ENSSPUG00000002545	CCDC61 (ENSSPUG00000002553)	NANOS2 (ENSSPUG00000002566) ##22	NOVA2 (ENSSPUG00000002591)	ENSSPUG00000002682	SYMPK (ENSSPUG00000002789)	DMWD (ENSSPUG00000002869)	DMPK (ENSSPUG00000002917)	SIX5 (ENSSPUG00000002955)	ENSSPUG00000002994	SNRPD2 (ENSSPUG00000003011)	HIF3A (ENSSPUG00000003020)	PPP5C (ENSSPUG00000003033)	ENSSPUG00000003046	PTGIR (ENSSPUG00000003066)	STRN4 (ENSSPUG00000003253)	FKRP (ENSSPUG00000003278)	SLC1A5 (ENSSPUG00000003287)
Archelosauria	ANCESTRAL SPECIES	33	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000167604	ENSGT00390000017608	ENSGT01030000234555.a.b	ENSGT00950000185426	ENSGT00940000162237	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00390000017045	ENSGT00940000166203	ENSGT00940000162120	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT01090000261113	ENSGT01030000234613.b.b	ENSGT00940000159555	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b
Archosauria	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Aves	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Duck	MODERN SPECIES	329																ENSAPLG00000028012 ##22
Cryptodira	ANCESTRAL SPECIES	35	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000167604	ENSGT00390000017608	ENSGT01030000234555.a.b	ENSGT00950000185426	ENSGT00940000162237	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00390000017045	ENSGT00940000166203	ENSGT00940000162120	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000161850	ENSGT00940000157969	ENSGT00940000156783	ENSGT00390000000190	ENSGT00390000010750.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000167604.d	ENSGT00390000017608	ENSGT01030000234555.a.b	ENSGT00950000185426	ENSGT00940000162237	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00390000017045	ENSGT00940000166203	ENSGT00940000162120	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B	ENSGT00940000161006.l.b	ENSGT00940000161006.l.a	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT01100000263552.h.b.s.a.b.b	ENSGT01030000234613.b.b	ENSGT00940000159555
Emydidae	ANCESTRAL SPECIES	45	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00940000164310	ENSGT00940000158785	ENSGT00940000161745	ENSGT00940000167604.d	ENSGT00390000017608	ENSGT01030000234555.a.b	ENSGT00950000185426	ENSGT00940000162237	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00390000017045	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B
painted turtle	MODERN SPECIES	879					PPP5C (ENSCPBG00000007279)	HIF3A (ENSCPBG00000007268)	ENSCPBG00000007264	SNRPD2 (ENSCPBG00000007259)	ENSCPBG00000007250	ENSCPBG00000007233	ENSCPBG00000007224	DMPK (ENSCPBG00000007204)	DMWD (ENSCPBG00000007193)	SYMPK (ENSCPBG00000007170)	NOVA2 (ENSCPBG00000007153)	NANOS2 (ENSCPBG00000007141) ##22	ENSCPBG00000007131	ENSCPBG00000007114	ENSCPBG00000007080	ENSCPBG00000007056	SLC1A5 (ENSCPBG00000007048)	FKRP (ENSCPBG00000007046)	STRN4 (ENSCPBG00000007025)	PRKD2 (ENSCPBG00000006974)	ENSCPBG00000006955	ENSCPBG00000006951	ENSCPBG00000006947	DACT3 (ENSCPBG00000006940)	GNG8 (ENSCPBG00000006933)	PTGIR (ENSCPBG00000006925)	ENSCPBG00000006913
Three-toed box turtle	MODERN SPECIES	221																ENSTMTG00000012711 ##22	ENSTMTG00000012721	ENSTMTG00000012764
Testudinidae	ANCESTRAL SPECIES	36	ENSGT00940000161745	ENSGT00940000167604.d	ENSGT00390000017608	ENSGT01030000234555.a.b	ENSGT00950000185426	ENSGT00940000162237	ENSGT00940000180177	ENSGT00940000162019	ENSGT00390000007686.a	ENSGT00390000017045	ENSGT00940000166203	ENSGT00940000162120	ENSGT00450000040421	ENSGT00860000136302	ENSGT00940000161740	ENSGT00950000183135.A.a ##22	ENSGT00940000154133.B	ENSGT00940000161006.l.b	ENSGT00940000162008	ENSGT00940000161006.l.a	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000156265.x.b.a.a.b
Abingdon island giant tortoise	MODERN SPECIES	2009	PTGIR (ENSCABG00000014355)	CALM3 (ENSCABG00000014352)	PPP5C (ENSCABG00000013535)	ENSCABG00000013522	SNRPD2 (ENSCABG00000013521)	ENSCABG00000013520	ENSCABG00000013519	ENSCABG00000013518	DMWD (ENSCABG00000013516)	SYMPK (ENSCABG00000013513)	ENSCABG00000013512	IRF2BP1 (ENSCABG00000013511)	ENSCABG00000013510	MYPOP (ENSCABG00000013509)	NOVA2 (ENSCABG00000013508)	ENSCABG00000013507 ##22	ENSCABG00000013505	CCDC61 (ENSCABG00000013504)	ENSCABG00000013503	PRLHR (ENSCABG00000013502)	ENSCABG00000013501	ENSCABG00000013500	QPCTL (ENSCABG00000013296)	ENSCABG00000013274	EML2 (ENSCABG00000008161)	ENSCABG00000008063	ENSCABG00000008061	ENSCABG00000008059	ENSCABG00000008057	FOSB (ENSCABG00000008056)	ENSCABG00000008055
Goode s thornscrub tortoise	MODERN SPECIES	134	SNRPD2 (ENSGEVG00005008411)	ENSGEVG00005008436	ENSGEVG00005008454	ENSGEVG00005008479	ENSGEVG00005008491	ENSGEVG00005008510	DMPK (ENSGEVG00005008534)	DMWD (ENSGEVG00005008598)	SYMPK (ENSGEVG00005008656)	ENSGEVG00005008841	ENSGEVG00005008883	ENSGEVG00005008917	IRF2BP1 (ENSGEVG00005008960)	MYPOP (ENSGEVG00005009011)	NOVA2 (ENSGEVG00005009144)	ENSGEVG00005009198 ##22	CCDC61 (ENSGEVG00005009259)	ENSGEVG00005009334	ENSGEVG00005009560	PRLHR (ENSGEVG00005009601)	ENSGEVG00005009649	QPCTL (ENSGEVG00005009703)	FBXO46 (ENSGEVG00005009811)	ENSGEVG00005009827	ENSGEVG00005009904	EML2 (ENSGEVG00005010764)	GPR4 (ENSGEVG00005014339)	OPA3 (ENSGEVG00005014359)	VASP (ENSGEVG00005014375)	ENSGEVG00005014415	ENSGEVG00005014505
Chinese turtle	MODERN SPECIES	1465									DMWD (ENSPSIG00000014751)	ENSPSIG00000014966	SYMPK (ENSPSIG00000015290)	ENSPSIG00000006046	ENSPSIG00000002009	ENSPSIG00000002011	ENSPSIG00000006125	NANOS2 (ENSPSIG00000007082) ##22	CCDC61 (ENSPSIG00000007259)	ENSPSIG00000008653	GCGR (ENSPSIG00000009150)	ENSPSIG00000011505
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT01040000240451.a.b.b.b	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b
Percomorphaceae	ANCESTRAL SPECIES	24	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167
Zig-zag eel	MODERN SPECIES	12	vps41 (ENSMAMG00000009615)	ENSMAMG00000028264	sox17 (ENSMAMG00000009528)	sox32 (ENSMAMG00000009505)	mrpl15 (ENSMAMG00000009482)	ENSMAMG00000009468	lypla1 (ENSMAMG00000009399)	ENSMAMG00000005750	ENSMAMG00000028230	ENSMAMG00000005707	ENSMAMG00000005694	ENSMAMG00000005677	mix23 (ENSMAMG00000005663)	ENSMAMG00000005645	KPNA1 (ENSMAMG00000026045)	ENSMAMG00000005577 ##22	ENSMAMG00000025971	MYOM1 (ENSMAMG00000005516)	LPIN2 (ENSMAMG00000005446)	EMILIN2 (ENSMAMG00000005417)	SMCHD1 (ENSMAMG00000005337)	METTL4 (ENSMAMG00000005327)	ADCYAP1 (ENSMAMG00000005315)	YES1 (ENSMAMG00000005280)	ENOSF1 (ENSMAMG00000005232)	tyms (ENSMAMG00000026111)	ENSMAMG00000005157	HACD1 (ENSMAMG00000005113)	TMEM236 (ENSMAMG00000005095)	MRC1 (ENSMAMG00000005063)	ENSMAMG00000005033
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167	ENSGT00510000048324
Siamese fighting fish	MODERN SPECIES	15	ccdc191 (ENSBSLG00000001542)	qtrt2 (ENSBSLG00000001552)	drd3 (ENSBSLG00000001563)	ENSBSLG00000001589	ENSBSLG00000001606	ENSBSLG00000001613	ENSBSLG00000001626	ENSBSLG00000001630	ENSBSLG00000001635	mix23 (ENSBSLG00000001637)	CSTA (ENSBSLG00000001644)	mix23 (ENSBSLG00000001645)	CSTA (ENSBSLG00000001649)	fam162a (ENSBSLG00000001651)	ENSBSLG00000001661	NANOS2 (ENSBSLG00000001807) ##22	ENSBSLG00000001810	vipr1b (ENSBSLG00000001839)	SEC22C (ENSBSLG00000001930)	NKTR (ENSBSLG00000001935)	ZBTB47 (ENSBSLG00000001940)	klhl40b (ENSBSLG00000001941)	hhatlb (ENSBSLG00000001945)	gars1 (ENSBSLG00000002164)	ENSBSLG00000002212	ZBTB47 (ENSBSLG00000002227)	klhl40b (ENSBSLG00000002345)	ENSBSLG00000002526	gars1 (ENSBSLG00000002563)	CTDSPL (ENSBSLG00000002675)	VILL (ENSBSLG00000002731)
Climbing perch	MODERN SPECIES	11	boc (ENSATEG00000010074)	USF3 (ENSATEG00000010036)	naa50 (ENSATEG00000028968)	ATP6V1A (ENSATEG00000009782)	GRAMD1C (ENSATEG00000009766)	zdhhc23b (ENSATEG00000009750)	ccdc191 (ENSATEG00000009736)	qtrt2 (ENSATEG00000009688)	drd3 (ENSATEG00000009656)	ENSATEG00000009650	ENSATEG00000009635	CSTA (ENSATEG00000026934)	mix23 (ENSATEG00000009463)	FAM162A (ENSATEG00000026117)	KPNA1 (ENSATEG00000009410)	ENSATEG00000009393 ##22	ENSATEG00000009373	vipr1b (ENSATEG00000009134)	ENSATEG00000009091	ZBTB47 (ENSATEG00000009048)	klhl40b (ENSATEG00000008939)	hhatlb (ENSATEG00000008895)	gars1 (ENSATEG00000008784)	ctdspla (ENSATEG00000008305)	VILL (ENSATEG00000008196)	plcd1a (ENSATEG00000008172)	ENSATEG00000008162	map3k22 (ENSATEG00000008099)	cry-dash (ENSATEG00000008026)	myd88 (ENSATEG00000008089)	oxsr1b (ENSATEG00000008014)
Carangaria	ANCESTRAL SPECIES	21	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00390000006207	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000167204	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858
Tongue sole	MODERN SPECIES	13	boc (ENSCSEG00000016741)	USF3 (ENSCSEG00000016756)	naa50 (ENSCSEG00000016768)	ATP6V1A (ENSCSEG00000016806)	KPNA1 (ENSCSEG00000016839)	fam162a (ENSCSEG00000016848)	mix23 (ENSCSEG00000016861)	ENSCSEG00000016922	ENSCSEG00000016932	drd3 (ENSCSEG00000017041)	qtrt2 (ENSCSEG00000017068)	ccdc191 (ENSCSEG00000017076)	zdhhc23b (ENSCSEG00000017103)	GRAMD1C (ENSCSEG00000017113)	ENSCSEG00000017149	ENSCSEG00000017157 ##22	ENSCSEG00000017163	ENSCSEG00000017172	vipr1b (ENSCSEG00000017555)	SEC22C (ENSCSEG00000017579)	NKTR (ENSCSEG00000017590)	ENSCSEG00000017601	ZBTB47 (ENSCSEG00000017606)	klhl40b (ENSCSEG00000017613)	hhatlb (ENSCSEG00000017624)	gars1 (ENSCSEG00000017654)	gars1 (ENSCSEG00000017671)	ctdspla (ENSCSEG00000017706)	VILL (ENSCSEG00000017726)	plcd1a (ENSCSEG00000017745)	ENSCSEG00000017769
Turbot	MODERN SPECIES	13	ENSSMAG00000014252	ENSSMAG00000014239	spice1 (ENSSMAG00000014217)	boc (ENSSMAG00000014203)	naa50 (ENSSMAG00000014183)	ATP6V1A (ENSSMAG00000014144)	GRAMD1C (ENSSMAG00000014110)	zdhhc23b (ENSSMAG00000014084)	ccdc191 (ENSSMAG00000014055)	qtrt2 (ENSSMAG00000014011)	drd3 (ENSSMAG00000013993)	ENSSMAG00000033833	ENSSMAG00000022461	ENSSMAG00000013952	ENSSMAG00000013918	ENSSMAG00000013915 ##22	ENSSMAG00000013880	vipr1b (ENSSMAG00000013845)	SEC22C (ENSSMAG00000013834)	NKTR (ENSSMAG00000013802)	ZBTB47 (ENSSMAG00000013773)	klhl40b (ENSSMAG00000013798)	hhatlb (ENSSMAG00000013753)	gars1 (ENSSMAG00000013709)	gars1 (ENSSMAG00000013672)	ctdspla (ENSSMAG00000025140)	VILL (ENSSMAG00000013594)	plcd1a (ENSSMAG00000013515)	ENSSMAG00000013429	map3k22 (ENSSMAG00000013366)	cry-dash (ENSSMAG00000013314)
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361
Seriola	ANCESTRAL SPECIES	27										ENSGT00950000183089.c.a.k.a.l	ENSGT01100000263504.a.b.b.b.b.x.a	ENSGT00940000155717.gb	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858
Greater amberjack	MODERN SPECIES	33	ENSSDUG00000015995	ENSSDUG00000016027	ENSSDUG00000016041	ENSSDUG00000016172	ENSSDUG00000016198	ENSSDUG00000016209	ENSSDUG00000016278	H4C7 (ENSSDUG00000016352)	H2BC11 (ENSSDUG00000016389)	ENSSDUG00000016402	ENSSDUG00000016419	CSTA (ENSSDUG00000016479)	mix23 (ENSSDUG00000016509)	fam162a (ENSSDUG00000016523)	KPNA1 (ENSSDUG00000016540)	NANOS2 (ENSSDUG00000016576) ##22	ENSSDUG00000016585	vipr1b (ENSSDUG00000016631)	SEC22C (ENSSDUG00000016667)	NKTR (ENSSDUG00000016685)	ZBTB47 (ENSSDUG00000016704)	klhl40b (ENSSDUG00000016716)	hhatlb (ENSSDUG00000016725)	gars1 (ENSSDUG00000016758)	gars1 (ENSSDUG00000016795)	ctdspla (ENSSDUG00000016863)	VILL (ENSSDUG00000016897)	plcd1a (ENSSDUG00000016936)	ENSSDUG00000016997	map3k22 (ENSSDUG00000017055)	cry-dash (ENSSDUG00000017085)
Yellowtail amberjack	MODERN SPECIES	2777					cst14a.1 (ENSSLDG00000013507)	ENSSLDG00000013551	ENSSLDG00000013580	ENSSLDG00000013640	ENSSLDG00000013651	ENSSLDG00000013661	ENSSLDG00000013671	CSTA (ENSSLDG00000013715)	mix23 (ENSSLDG00000013727)	fam162a (ENSSLDG00000013742)	KPNA1 (ENSSLDG00000013759)	NANOS2 (ENSSLDG00000013795) ##22	ENSSLDG00000013805	ENSSLDG00000013821	ENSSLDG00000013842	vipr1b (ENSSLDG00000013889)	SEC22C (ENSSLDG00000013929)	NKTR (ENSSLDG00000013986)	ZBTB47 (ENSSLDG00000014177)	klhl40b (ENSSLDG00000014189)	hhatlb (ENSSLDG00000014204)	gars1 (ENSSLDG00000014238)	gars1 (ENSSLDG00000014279)	ctdspla (ENSSLDG00000014337)	VILL (ENSSLDG00000014393)	plcd1a (ENSSLDG00000014485)	ENSSLDG00000014533
Barramundi perch	MODERN SPECIES	47	ATP6V1A (ENSLCAG00010012065)	ENSLCAG00010012049	GRAMD1C (ENSLCAG00010012044)	zdhhc23b (ENSLCAG00010012042)	ccdc191 (ENSLCAG00010012030)	qtrt2 (ENSLCAG00010012022)	drd3 (ENSLCAG00010012019)	ENSLCAG00010012012	ENSLCAG00010012009	ENSLCAG00010012006	ENSLCAG00010012002	CSTA (ENSLCAG00010012000)	mix23 (ENSLCAG00010011990)	fam162a (ENSLCAG00010011984)	KPNA1 (ENSLCAG00010010939)	NANOS2 (ENSLCAG00010010773) ##22	ENSLCAG00010010772	vipr1b (ENSLCAG00010010756)	SEC22C (ENSLCAG00010010749)	NKTR (ENSLCAG00010010746)	ENSLCAG00010010743	ENSLCAG00010010741	ZBTB47 (ENSLCAG00010010737)	klhl40b (ENSLCAG00010010734)	hhatlb (ENSLCAG00010010729)	gars1 (ENSLCAG00010010713)	gars1 (ENSLCAG00010010591)	ctdspla (ENSLCAG00010010554)	VILL (ENSLCAG00010010531)	plcd1a (ENSLCAG00010010456)	DLEC1 (ENSLCAG00010010418)
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.m.a	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361
Ballan wrasse	MODERN SPECIES	8	SHISA2 (ENSLBEG00000018324)	boc (ENSLBEG00000018362)	USF3 (ENSLBEG00000018434)	naa50 (ENSLBEG00000018474)	ATP6V1A (ENSLBEG00000018520)	GRAMD1C (ENSLBEG00000018585)	ccdc191 (ENSLBEG00000018616)	zdhhc23b (ENSLBEG00000018660)	qtrt2 (ENSLBEG00000018687)	drd3 (ENSLBEG00000018697)	ENSLBEG00000018704	ENSLBEG00000018723	mix23 (ENSLBEG00000018746)	fam162a (ENSLBEG00000018775)	KPNA1 (ENSLBEG00000018793)	NANOS2 (ENSLBEG00000018836) ##22	ENSLBEG00000018847	vipr1b (ENSLBEG00000018888)	SEC22C (ENSLBEG00000018955)	ENSLBEG00000018967	ENSLBEG00000018999	ZBTB47 (ENSLBEG00000019067)	klhl40b (ENSLBEG00000019133)	hhatlb (ENSLBEG00000019154)	gars1 (ENSLBEG00000019179)	gars1 (ENSLBEG00000019228)	ctdspla (ENSLBEG00000019361)	VILL (ENSLBEG00000019445)	plcd1a (ENSLBEG00000019642)	ENSLBEG00000020148	map3k22 (ENSLBEG00000020359)
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.m.a	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361
Perciformes	ANCESTRAL SPECIES	21	ENSGT00390000006207	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.m.a	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Perciformes_a	ANCESTRAL SPECIES	22	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.m.a	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT01100000266426	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361
Channel bull blenny	MODERN SPECIES	12	naa50 (ENSCGOG00000014703)	ATP6V1A (ENSCGOG00000014720)	GRAMD1C (ENSCGOG00000015032)	zdhhc23b (ENSCGOG00000015037)	qtrt2 (ENSCGOG00000015044)	drd3 (ENSCGOG00000015050)	drd3 (ENSCGOG00000015054)	ENSCGOG00000015072	cst14a.1 (ENSCGOG00000015076)	ENSCGOG00000015085	ENSCGOG00000015088	ENSCGOG00000015103	mix23 (ENSCGOG00000015090)	fam162a (ENSCGOG00000015106)	KPNA1 (ENSCGOG00000015140)	NANOS2 (ENSCGOG00000016672) ##22	ENSCGOG00000016673	vipr1b (ENSCGOG00000016685)	ENSCGOG00000016718	SEC22C (ENSCGOG00000016720)	ENSCGOG00000016723	ENSCGOG00000016725	ZBTB47 (ENSCGOG00000016728)	klhl40b (ENSCGOG00000016734)	hhatlb (ENSCGOG00000016762)	gars1 (ENSCGOG00000016768)	gars1 (ENSCGOG00000016987)	ctdspla (ENSCGOG00000017347)	VILL (ENSCGOG00000017429)	plcd1a (ENSCGOG00000017960)	ENSCGOG00000019180
Pike perch	MODERN SPECIES	26	dohh (ENSSLUG00000022450)	ENSSLUG00000022434	ENSSLUG00000022429	ENSSLUG00000022421	ENSSLUG00000022412	ENSSLUG00000022401	ENSSLUG00000022394	LRRC24 (ENSSLUG00000022384)	sass6 (ENSSLUG00000022371)	ENSSLUG00000022343	ENSSLUG00000022257	ENSSLUG00000022242	lrrc40 (ENSSLUG00000022212)	rpl36 (ENSSLUG00000022191)	pde6d (ENSSLUG00000022168)	ENSSLUG00000022160 ##22	lmnb2 (ENSSLUG00000021344)	commd2 (ENSSLUG00000021290)	TRAPPC8 (ENSSLUG00000021244)	ctns (ENSSLUG00000021220)	zgc:171480 (ENSSLUG00000021217)	ndufa11 (ENSSLUG00000021213)	slc5a9 (ENSSLUG00000021204)	b4galt6 (ENSSLUG00000021003)	ENSSLUG00000020971	ENSSLUG00000020949	ENSSLUG00000020936	ENSSLUG00000020930	cdh2 (ENSSLUG00000019144)	ENSSLUG00000019045	ENSSLUG00000019036
Cottioidei	ANCESTRAL SPECIES	21	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.m.a	ENSGT00940000167204	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361
Lumpfish	MODERN SPECIES	12	boc (ENSCLMG00005021218)	ENSCLMG00005021217	naa50 (ENSCLMG00005021216)	ATP6V1A (ENSCLMG00005021215)	ENSCLMG00005021214	GRAMD1C (ENSCLMG00005021212)	zdhhc23b (ENSCLMG00005021211)	ccdc191 (ENSCLMG00005021210)	qtrt2 (ENSCLMG00005021209)	drd3 (ENSCLMG00005021195)	ENSCLMG00005021188	cst14a.1 (ENSCLMG00005021187)	mix23 (ENSCLMG00005021185)	fam162a (ENSCLMG00005021184)	KPNA1 (ENSCLMG00005020984)	NANOS2 (ENSCLMG00005020979) ##22	ENSCLMG00005020974	vipr1b (ENSCLMG00005020966)	SEC22C (ENSCLMG00005020960)	ENSCLMG00005020958	ENSCLMG00005020956	ENSCLMG00005020953	ZBTB47 (ENSCLMG00005020950)	klhl40b (ENSCLMG00005020947)	hhatlb (ENSCLMG00005020945)	GARS1 (ENSCLMG00005020940)	gars1 (ENSCLMG00005020933)	GARS1 (ENSCLMG00005020930)	ctdspla (ENSCLMG00005020915)	VILL (ENSCLMG00005020150)	plcd1a (ENSCLMG00005019985)
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.n	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167	ENSGT00510000048324
Gilthead seabream	MODERN SPECIES	10	ccdc191 (ENSSAUG00010014556)	qtrt2 (ENSSAUG00010014560)	drd3 (ENSSAUG00010014562)	ENSSAUG00010014565	cst14a.1 (ENSSAUG00010014569)	CSTA (ENSSAUG00010014574)	ENSSAUG00010014579	ENSSAUG00010014582	ENSSAUG00010014583	ENSSAUG00010014585	ENSSAUG00010014586	ENSSAUG00010014590	mix23 (ENSSAUG00010014592)	fam162a (ENSSAUG00010014594)	KPNA1 (ENSSAUG00010014617)	NANOS2 (ENSSAUG00010014747) ##22	ENSSAUG00010014749	ENSSAUG00010014755	vipr1b (ENSSAUG00010014777)	SEC22C (ENSSAUG00010015252)	NKTR (ENSSAUG00010015262)	ZBTB47 (ENSSAUG00010015270)	klhl40b (ENSSAUG00010015271)	hhatlb (ENSSAUG00010015272)	gars1 (ENSSAUG00010015304)	ctdspla (ENSSAUG00010015831)	VILL (ENSSAUG00010015920)	plcd1a (ENSSAUG00010018908)	ENSSAUG00010020632	map3k22 (ENSSAUG00010020633)	CCR9 (ENSSAUG00010020640)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661.n	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167	ENSGT00510000048324
European seabass	MODERN SPECIES	8	boc (ENSDLAG00005009502)	ENSDLAG00005009517	naa50 (ENSDLAG00005027949)	ATP6V1A (ENSDLAG00005009564)	GRAMD1C (ENSDLAG00005009661)	zdhhc23b (ENSDLAG00005009675)	ccdc191 (ENSDLAG00005009684)	qtrt2 (ENSDLAG00005009711)	drd3 (ENSDLAG00005009728)	ENSDLAG00005029962	ENSDLAG00005020034	MIX23 (ENSDLAG00005009790)	CSTA (ENSDLAG00005009815)	ENSDLAG00005034933	E2IG5 (ENSDLAG00005026931)	ENSDLAG00005029847 ##22	ENSDLAG00005012075	vipr1b (ENSDLAG00005029886)	SEC22C (ENSDLAG00005012695)	NKTR (ENSDLAG00005012734)	ZBTB47 (ENSDLAG00005012786)	klhl40b (ENSDLAG00005012799)	hhatlb (ENSDLAG00005012810)	gars1 (ENSDLAG00005017209)	gars1 (ENSDLAG00005012902)	CTDSL (ENSDLAG00005031689)	VILL (ENSDLAG00005014862)	plcd1a (ENSDLAG00005004449)	ENSDLAG00005006829	map3k22 (ENSDLAG00005006903)	CRY-DASH (ENSDLAG00005006961)
Large yellow croaker	MODERN SPECIES	494	GRAMD1C (ENSLCRG00005022242)	zdhhc23b (ENSLCRG00005022239)	ccdc191 (ENSLCRG00005022238)	qtrt2 (ENSLCRG00005022237)	drd3 (ENSLCRG00005022236)	ENSLCRG00005022235	ENSLCRG00005022234	ENSLCRG00005022232	ENSLCRG00005022231	ENSLCRG00005022230	ENSLCRG00005022229	ENSLCRG00005022228	mix23 (ENSLCRG00005022227)	fam162a (ENSLCRG00005022224)	KPNA1 (ENSLCRG00005021457)	ENSLCRG00005021443 ##22	ENSLCRG00005021441	vipr1b (ENSLCRG00005021311)	SEC22C (ENSLCRG00005021306)	NKTR (ENSLCRG00005021269)	ZBTB47 (ENSLCRG00005021267)	klhl40b (ENSLCRG00005021266)	hhatlb (ENSLCRG00005021258)	gars1 (ENSLCRG00005021250)	ctdspla (ENSLCRG00005021240)	VILL (ENSLCRG00005019909)	plcd1a (ENSLCRG00005019798)	ENSLCRG00005019793	map3k22 (ENSLCRG00005019781)	cry-dash (ENSLCRG00005019735)	myd88 (ENSLCRG00005019729)
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000177936	ENSGT00940000167204	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858
Oryzias	ANCESTRAL SPECIES	18	ENSGT00390000006207	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204.a	ENSGT00940000167204.b	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858
Javanese ricefish	MODERN SPECIES	12	GRAMD1C (ENSOJAG00000016778)	zdhhc23b (ENSOJAG00000016768)	ccdc191 (ENSOJAG00000016753)	qtrt2 (ENSOJAG00000016743)	drd3 (ENSOJAG00000016733)	ENSOJAG00000016715	ENSOJAG00000016702	ENSOJAG00000016689	ENSOJAG00000016648	ENSOJAG00000016565	ENSOJAG00000016554	ENSOJAG00000016545	mix23 (ENSOJAG00000016532)	fam162a (ENSOJAG00000016526)	KPNA1 (ENSOJAG00000015822)	NANOS2 (ENSOJAG00000015772) ##22	ENSOJAG00000015750	vipr1b (ENSOJAG00000015237)	SEC22C (ENSOJAG00000015195)	NKTR (ENSOJAG00000015187)	ZBTB47 (ENSOJAG00000015179)	klhl40b (ENSOJAG00000015171)	ctdspla (ENSOJAG00000014898)	VILL (ENSOJAG00000012771)	plcd1a (ENSOJAG00000012449)	ENSOJAG00000012360	map3k22 (ENSOJAG00000012249)	cry-dash (ENSOJAG00000012214)	myd88 (ENSOJAG00000012156)	oxsr1b (ENSOJAG00000011265)	oxsr1b (ENSOJAG00000011107)
Indian medaka	MODERN SPECIES	14	USF3 (ENSOMEG00000006956)	naa50 (ENSOMEG00000006892)	ATP6V1A (ENSOMEG00000006849)	GRAMD1C (ENSOMEG00000006824)	ENSOMEG00000006800	zdhhc23b (ENSOMEG00000006774)	ccdc191 (ENSOMEG00000006747)	qtrt2 (ENSOMEG00000006725)	drd3 (ENSOMEG00000006687)	ENSOMEG00000006640	ENSOMEG00000006603	ENSOMEG00000006597	cst14a.1 (ENSOMEG00000006588)	mix23 (ENSOMEG00000006576)	KPNA1 (ENSOMEG00000006551)	NANOS2 (ENSOMEG00000006512) ##22	ENSOMEG00000006504	ENSOMEG00000006476	vipr1b (ENSOMEG00000006437)	SEC22C (ENSOMEG00000006370)	NKTR (ENSOMEG00000006320)	ZBTB47 (ENSOMEG00000006147)	klhl40b (ENSOMEG00000006122)	hhatlb (ENSOMEG00000006093)	gars1 (ENSOMEG00000000133)	ctdspla (ENSOMEG00000006030)	VILL (ENSOMEG00000006002)	plcd1a (ENSOMEG00000005925)	ENSOMEG00000005873	map3k22 (ENSOMEG00000005798)	cry-dash (ENSOMEG00000005737)
Oryzias_a	ANCESTRAL SPECIES	16	ENSGT00390000006207	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826.o	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000164858	ENSGT00940000165167	ENSGT00510000048324
Chinese medaka	MODERN SPECIES	1041	spice1 (ENSOSIG00000016706)	boc (ENSOSIG00000016703)	USF3 (ENSOSIG00000016697)	naa50 (ENSOSIG00000016686)	ATP6V1A (ENSOSIG00000016602)	ENSOSIG00000016596	zdhhc23b (ENSOSIG00000016593)	ccdc191 (ENSOSIG00000016590)	qtrt2 (ENSOSIG00000016589)	drd3 (ENSOSIG00000016587)	ENSOSIG00000016586	ENSOSIG00000016584	mix23 (ENSOSIG00000016582)	fam162a (ENSOSIG00000016580)	KPNA1 (ENSOSIG00000016366)	NANOS2 (ENSOSIG00000016356) ##22	vipr1b (ENSOSIG00000016321)	SEC22C (ENSOSIG00000016297)	ENSOSIG00000016295	ZBTB47 (ENSOSIG00000016293)	klhl40b (ENSOSIG00000016292)	hhatlb (ENSOSIG00000016282)	gars1 (ENSOSIG00000016259)	ctdspla (ENSOSIG00000016222)	VILL (ENSOSIG00000009915)	plcd1a (ENSOSIG00000009516)	map3k22 (ENSOSIG00000009513)	cry-dash (ENSOSIG00000009512)	myd88 (ENSOSIG00000009510)	oxsr1b (ENSOSIG00000006962)	slc22a13b (ENSOSIG00000006943)
Japanese Medaka HdrR	MODERN SPECIES	12	zdhhc23b (ENSORLG00000009146)	ccdc191 (ENSORLG00000009175)	qtrt2 (ENSORLG00000009211)	ENSORLG00000022216	drd3 (ENSORLG00000009228)	ENSORLG00000009234	ENSORLG00000022570	cst14a.1 (ENSORLG00000026441)	ENSORLG00000022295	ENSORLG00000009248	ENSORLG00000009258	ENSORLG00000029248	mix23 (ENSORLG00000024197)	fam162a (ENSORLG00000025106)	KPNA1 (ENSORLG00000009322)	nanos2 (ENSORLG00000009335) ##22	ENSORLG00000009347	vipr1b (ENSORLG00000009354)	SEC22C (ENSORLG00000009365)	NKTR (ENSORLG00000009388)	ZBTB47 (ENSORLG00000009398)	klhl40b (ENSORLG00000009415)	hhatlb (ENSORLG00000009434)	gars1 (ENSORLG00000009470)	ctdspla (ENSORLG00000009494)	VILL (ENSORLG00000009593)	plcd1a (ENSORLG00000009694)	DLEC1 (ENSORLG00000009723)	map3k22 (ENSORLG00000009751)	cry-dash (ENSORLG00000009768)	myd88 (ENSORLG00000009788)
Cyprinodontiformes	ANCESTRAL SPECIES	20	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00990000205642	ENSGT00940000167204	ENSGT00940000155717	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167
Aplocheiloidei	ANCESTRAL SPECIES	18	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT01010000227412	ENSGT00940000167204	ENSGT00940000155717	ENSGT00940000154826	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167	ENSGT00510000048324
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	1617	naa50 (ENSNFUG00015021945)	ATP6V1A (ENSNFUG00015021906)	GRAMD1C (ENSNFUG00015021891)	zdhhc23b (ENSNFUG00015021889)	ccdc191 (ENSNFUG00015021885)	QTRTD1 (ENSNFUG00015021880)	DRD3 (ENSNFUG00015021875)	OLA.2341 (ENSNFUG00015021870)	ENSNFUG00015021865	Nfu_g_1_011208 (ENSNFUG00015021863)	CSTA (ENSNFUG00015021862)	mix23 (ENSNFUG00015021856)	fam162a (ENSNFUG00015021853)	ENSNFUG00015021852	KPNA1 (ENSNFUG00015021321)	ENSNFUG00015021318 ##22	ENSNFUG00015021317	Nfu_g_1_011425 (ENSNFUG00015021315)	ENSNFUG00015021314	vipr1b (ENSNFUG00015021259)	SEC22C (ENSNFUG00015021255)	NKTR (ENSNFUG00015021251)	ENSNFUG00015021248	ZBTB47 (ENSNFUG00015021246)	klhl40b (ENSNFUG00015021244)	hhatlb (ENSNFUG00015021239)	ctdspla (ENSNFUG00015021221)	VILL (ENSNFUG00015021160)	plcd1a (ENSNFUG00015021129)	ENSNFUG00015021119	Nfu_g_1_011407 (ENSNFUG00015021106)
Turquoise killifish	MODERN SPECIES	1615	sgcg (ENSNFUG00015019462)	rps25 (ENSNFUG00015019465)	TRAPPC4 (ENSNFUG00015019472)	SLC37A4A (ENSNFUG00015019494)	CCDC19 (ENSNFUG00015019498)	cltcb (ENSNFUG00015019528)	ENSNFUG00015019640	snrpd2 (ENSNFUG00015019674)	ENSNFUG00015019727	pglyrp5 (ENSNFUG00015003833)	polr2i (ENSNFUG00015003841)	ENSNFUG00015003843	C5AR1 (ENSNFUG00015003845)	DACT3 (ENSNFUG00015003848)	GRAMD1B (ENSNFUG00015003919)	NANOS2 (ENSNFUG00015004194) ##22	CLMP (ENSNFUG00015004199)	KIRREL3 (ENSNFUG00015004336)	ENSNFUG00015004610	ENSNFUG00015004614	PRUNE (ENSNFUG00015004617)	bnipl (ENSNFUG00015004621)	ENSNFUG00015004626	ENSNFUG00015004630	fli1 (ENSNFUG00015004641)	kcnj1a.6 (ENSNFUG00015004656)	KCNJ5 (ENSNFUG00015004658)	ENSNFUG00015004660	st3gal4 (ENSNFUG00015004662)	TIRAP (ENSNFUG00015004668)	SRPRA (ENSNFUG00015004688)
Cyprinodontoidei	ANCESTRAL SPECIES	27											ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167
NAME_4	ANCESTRAL SPECIES	38												ENSGT01030000235167.j	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00940000165361	ENSGT00940000164858	ENSGT00940000165167	ENSGT00510000048324
Mummichog	MODERN SPECIES	2445									ENSFHEG00000012652	ENSFHEG00000012674	ENSFHEG00000012714	ENSFHEG00000012723	mix23 (ENSFHEG00000012752)	fam162a (ENSFHEG00000012759)	KPNA1 (ENSFHEG00000012777)	NANOS2 (ENSFHEG00000012835) ##22	ENSFHEG00000012856	vipr1b (ENSFHEG00000012991)	SEC22C (ENSFHEG00000013015)	ENSFHEG00000013033	NKTR (ENSFHEG00000013042)	ZBTB47 (ENSFHEG00000013071)	klhl40b (ENSFHEG00000000296)	hhatlb (ENSFHEG00000013160)	gars1 (ENSFHEG00000013189)	ctdspla (ENSFHEG00000013227)	VILL (ENSFHEG00000013239)	plcd1a (ENSFHEG00000013255)	ENSFHEG00000013269	ENSFHEG00000013280	map3k22 (ENSFHEG00000013380)
Sheepshead minnow	MODERN SPECIES	786									ENSCVAG00000006840	ENSCVAG00000006847	ENSCVAG00000006851	ENSCVAG00000006858	mix23 (ENSCVAG00000006873)	fam162a (ENSCVAG00000006881)	KPNA1 (ENSCVAG00000006924)	NANOS2 (ENSCVAG00000006947) ##22	ENSCVAG00000006958	vipr1b (ENSCVAG00000006994)	SEC22C (ENSCVAG00000000820)	NKTR (ENSCVAG00000007018)	ZBTB47 (ENSCVAG00000007026)	klhl40b (ENSCVAG00000007069)	hhatlb (ENSCVAG00000007083)	gars1 (ENSCVAG00000007149)	ctdspla (ENSCVAG00000007197)
Poeciliinae	ANCESTRAL SPECIES	20	ENSGT00390000005213	ENSGT00940000157709.i	ENSGT00940000153776.a.a	ENSGT01090000260080.b.b	ENSGT00940000162447	ENSGT00940000158260	ENSGT00550000074850	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000172067	ENSGT01030000235167	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862.d.a.b	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858
Poecilia	ANCESTRAL SPECIES	17	ENSGT00390000005213	ENSGT00940000157709.i	ENSGT00940000153776.a.a	ENSGT01090000260080.b.b	ENSGT00940000162447	ENSGT00940000158260	ENSGT00550000074850	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000172067	ENSGT01030000235167	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862.d.a.b	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000164858
NAME_6	ANCESTRAL SPECIES	22	ENSGT00940000154473.a	ENSGT00390000005213	ENSGT00940000157709.i	ENSGT00940000153776.a.a	ENSGT01090000260080.b.b	ENSGT00940000162447	ENSGT00940000158260	ENSGT00550000074850	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000172067	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862.d.a.b	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548.c	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b.b	ENSGT00940000158392.e.b.a	ENSGT00390000006098	ENSGT00940000165361
Amazon molly	MODERN SPECIES	315	rrs1 (ENSPFOG00000020722)	MYBL1 (ENSPFOG00000005169)	sgk3 (ENSPFOG00000004535)	MCMDC2 (ENSPFOG00000004210)	TCF24 (ENSPFOG00000004192)	ppp1r42 (ENSPFOG00000004142)	cops5 (ENSPFOG00000004051)	ENSPFOG00000021849	ARFGEF1 (ENSPFOG00000004043)	ENSPFOG00000024605	ENSPFOG00000023013	ENSPFOG00000022152	mix23 (ENSPFOG00000003995)	fam162a (ENSPFOG00000003958)	KPNA1 (ENSPFOG00000003840)	NANOS2 (ENSPFOG00000020721) ##22	ENSPFOG00000003806	ENSPFOG00000003787	ENSPFOG00000024784	vipr1b (ENSPFOG00000003737)
Sailfin molly	MODERN SPECIES	71	trim55b (ENSPLAG00000007056)	crhb (ENSPLAG00000007079)	MYBL1 (ENSPLAG00000007119)	sgk3 (ENSPLAG00000007212)	MCMDC2 (ENSPLAG00000007271)	TCF24 (ENSPLAG00000007280)	ppp1r42 (ENSPLAG00000007320)	cops5 (ENSPLAG00000007365)	ARFGEF1 (ENSPLAG00000007534)	ENSPLAG00000007565	ENSPLAG00000007590	mix23 (ENSPLAG00000007608)	ENSPLAG00000007665	fam162a (ENSPLAG00000007674)	KPNA1 (ENSPLAG00000007763)	NANOS2 (ENSPLAG00000007786) ##22	ENSPLAG00000007807	ENSPLAG00000000165	vipr1b (ENSPLAG00000007835)	SEC22C (ENSPLAG00000007849)	NKTR (ENSPLAG00000007880)	ZBTB47 (ENSPLAG00000007917)	klhl40b (ENSPLAG00000007944)	hhatlb (ENSPLAG00000007987)	gars1 (ENSPLAG00000008038)
Guppy	MODERN SPECIES	451	crhb (ENSPREG00000019949)	rrs1 (ENSPREG00000019960)	MYBL1 (ENSPREG00000019967)	sgk3 (ENSPREG00000019998)	MCMDC2 (ENSPREG00000020044)	TCF24 (ENSPREG00000020081)	ppp1r42 (ENSPREG00000020099)	cops5 (ENSPREG00000020125)	ARFGEF1 (ENSPREG00000020209)	ENSPREG00000020362	ENSPREG00000020377	CSTA (ENSPREG00000020397)	mix23 (ENSPREG00000020406)	fam162a (ENSPREG00000020422)	KPNA1 (ENSPREG00000020432)	NANOS2 (ENSPREG00000020465) ##22	ENSPREG00000020476	ENSPREG00000020492	vipr1b (ENSPREG00000020510)	SEC22C (ENSPREG00000020529)	NKTR (ENSPREG00000020612)	ZBTB47 (ENSPREG00000020897)	klhl40b (ENSPREG00000020909)	hhatlb (ENSPREG00000020934)	gars1 (ENSPREG00000020960)	CTDSPL (ENSPREG00000021038)	VILL (ENSPREG00000021063)	plcd1a (ENSPREG00000021087)	ENSPREG00000021123	map3k22 (ENSPREG00000021179)	cry-dash (ENSPREG00000021219)
Platyfish	MODERN SPECIES	13	trim55b (ENSXMAG00000009661)	crhb (ENSXMAG00000020158)	MYBL1 (ENSXMAG00000001658)	sgk3 (ENSXMAG00000001600)	MCMDC2 (ENSXMAG00000001580)	TCF24 (ENSXMAG00000024821)	ppp1r42 (ENSXMAG00000009649)	cops5 (ENSXMAG00000009626)	ENSXMAG00000024352	ARFGEF1 (ENSXMAG00000009585)	CSTA (ENSXMAG00000030037)	ENSXMAG00000024186	mix23 (ENSXMAG00000022563)	fam162a (ENSXMAG00000009574)	KPNA1 (ENSXMAG00000027948)	ENSXMAG00000020157 ##22	ENSXMAG00000009552	ENSXMAG00000009551	vipr1b (ENSXMAG00000009513)	SEC22C (ENSXMAG00000009504)	NKTR (ENSXMAG00000009479)	ZBTB47 (ENSXMAG00000009463)	ENSXMAG00000024424	klhl40b (ENSXMAG00000009443)	hhatlb (ENSXMAG00000009425)	gars1 (ENSXMAG00000009402)	ctdspla (ENSXMAG00000028416)	VILL (ENSXMAG00000009353)	plcd1a (ENSXMAG00000009326)	ENSXMAG00000009312	map3k22 (ENSXMAG00000009286)
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Cichlidae	ANCESTRAL SPECIES	18	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013.g	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826	ENSGT00940000155717	ENSGT01030000235167	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT00940000158013.g	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826.m.a.a	ENSGT00940000177936	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19	ENSGT00550000074787.d.a.a	ENSGT00940000158013.h	ENSGT00940000158013.g	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Haplochromini	DUPLICATION
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT01030000235167	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00940000155717.w.a.a	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.n ##22	ENSGT00530000064862	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253
Burton s mouthbrooder	MODERN SPECIES	270	naa50 (ENSHBUG00000017240)	ATP6V1A (ENSHBUG00000017201)	GRAMD1C (ENSHBUG00000017114)	zdhhc23b (ENSHBUG00000000899)	ccdc191 (ENSHBUG00000017071)	qtrt2 (ENSHBUG00000017045)	drd3 (ENSHBUG00000017022)	ENSHBUG00000016998	CSTA (ENSHBUG00000016993)	CSTA (ENSHBUG00000016985)	ENSHBUG00000016964	CSTA (ENSHBUG00000016899)	mix23 (ENSHBUG00000016889)	fam162a (ENSHBUG00000016866)	KPNA1 (ENSHBUG00000016841)	NANOS2 (ENSHBUG00000016772) ##22	ENSHBUG00000016758	ENSHBUG00000016727	vipr1b (ENSHBUG00000016702)	SEC22C (ENSHBUG00000016657)	NKTR (ENSHBUG00000016643)	ZBTB47 (ENSHBUG00000016619)	klhl40b (ENSHBUG00000016591)	hhatlb (ENSHBUG00000016582)	gars1 (ENSHBUG00000000815)	gars1 (ENSHBUG00000016481)	ctdspla (ENSHBUG00000016416)	VILL (ENSHBUG00000016379)	plcd1a (ENSHBUG00000016342)	ENSHBUG00000016318	map3k22 (ENSHBUG00000016292)
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00940000158013.g	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.n ##22	ENSGT00530000064862	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180167	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00940000158013.g	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180167	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b
Zebra mbuna	MODERN SPECIES		GRAMD1C (ENSMZEG00005021950)	zdhhc23b (ENSMZEG00005021952)	ccdc191 (ENSMZEG00005021954)	qtrt2 (ENSMZEG00005021955)	drd3 (ENSMZEG00005021957)	ENSMZEG00005021958	ENSMZEG00005021960	ENSMZEG00005021961	CSTA (ENSMZEG00005021970)	CSTA (ENSMZEG00005021972)	ENSMZEG00005021975	ENSMZEG00005021977	mix23 (ENSMZEG00005021981)	fam162a (ENSMZEG00005021982)	KPNA1 (ENSMZEG00005021985)	ENSMZEG00005021987 ##22	ENSMZEG00005021988
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT01030000235167	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00940000155717.w.a.a	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.n ##22	ENSGT00530000064862	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.n ##22	ENSGT00530000064862	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180167	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180167	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098
Zebra mbuna	DUPLICATION
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	989																ENSMZEG00005024641 ##22	ENSMZEG00005024640	ENSMZEG00005024638	txnipa (ENSMZEG00005024637)
Zebra mbuna	MODERN SPECIES	736																ENSMZEG00005028148 ##22	ENSMZEG00005028149
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1063																ENSMZEG00005003043 ##22
Zebra mbuna	MODERN SPECIES	739																ENSMZEG00005028154 ##22
Eastern happy	MODERN SPECIES	21	ENSACLG00000026889	ENSACLG00000026892	ENSACLG00000026896	ENSACLG00000026901	ENSACLG00000026906	ENSACLG00000026917	ENSACLG00000026940	ENSACLG00000026949	ENSACLG00000026952	CSTA (ENSACLG00000026957)	ENSACLG00000026960	ENSACLG00000026963	mix23 (ENSACLG00000026966)	fam162a (ENSACLG00000026973)	KPNA1 (ENSACLG00000026976)	NANOS2 (ENSACLG00000027005) ##22	ENSACLG00000027014	vipr1b (ENSACLG00000027040)	SEC22C (ENSACLG00000027069)	NKTR (ENSACLG00000027075)	ZBTB47 (ENSACLG00000027087)	ENSACLG00000027100	klhl40b (ENSACLG00000027102)	hhatlb (ENSACLG00000027110)	gars1 (ENSACLG00000027158)	gars1 (ENSACLG00000027174)	ctdspla (ENSACLG00000027198)	VILL (ENSACLG00000027218)	plcd1a (ENSACLG00000027250)	ENSACLG00000027269	map3k22 (ENSACLG00000027280)
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT01030000235167	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00940000155717.w.a.a	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.n ##22	ENSGT00530000064862	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000167204	ENSGT00940000154826.m.b	ENSGT00940000155717.w.b	ENSGT00940000154826.m.a.a	ENSGT00940000155717.w.a.b	ENSGT00940000154826.n	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a.m.a ##22	ENSGT00950000183135.A.a.n ##22	ENSGT00530000064862	ENSGT00950000183135.A.a.m.b ##22	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180167	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253
P. nyererei	MODERN SPECIES	302	GRAMD1C (ENSPNYG00000004165)	zdhhc23b (ENSPNYG00000004192)	ccdc191 (ENSPNYG00000004241)	qtrt2 (ENSPNYG00000004318)	ENSPNYG00000004336	drd3 (ENSPNYG00000004353)	ENSPNYG00000004378	ENSPNYG00000004397	CSTA (ENSPNYG00000004408)	CSTA (ENSPNYG00000004417)	ENSPNYG00000004428	ENSPNYG00000004449	mix23 (ENSPNYG00000004466)	fam162a (ENSPNYG00000004485)	KPNA1 (ENSPNYG00000004500)	NANOS2 (ENSPNYG00000004545) ##22	ENSPNYG00000004558	vipr1b (ENSPNYG00000004580)	SEC22C (ENSPNYG00000004619)	ENSPNYG00000004629	ENSPNYG00000004639	ENSPNYG00000004653	ZBTB47 (ENSPNYG00000004668)	klhl40b (ENSPNYG00000004694)	hhatlb (ENSPNYG00000004749)	gars1 (ENSPNYG00000004960)	gars1 (ENSPNYG00000005017)	ctdspla (ENSPNYG00000005093)	VILL (ENSPNYG00000005168)	plcd1a (ENSPNYG00000005315)	ENSPNYG00000005356
Lyretail cichlid	MODERN SPECIES	325													mix23 (ENSNBRG00000018934)	fam162a (ENSNBRG00000018901)	KPNA1 (ENSNBRG00000018864)	NANOS2 (ENSNBRG00000018838) ##22	vipr1b (ENSNBRG00000018796)	SEC22C (ENSNBRG00000018770)	ENSNBRG00000018760	ENSNBRG00000018751	ZBTB47 (ENSNBRG00000018718)	klhl40b (ENSNBRG00000018706)	hhatlb (ENSNBRG00000018666)	gars1 (ENSNBRG00000018643)	gars1 (ENSNBRG00000018585)	ctdspla (ENSNBRG00000018557)	VILL (ENSNBRG00000018493)	plcd1a (ENSNBRG00000018469)	DLEC1 (ENSNBRG00000018276)	map3k22 (ENSNBRG00000018214)	cry-dash (ENSNBRG00000018178)
Nile tilapia	MODERN SPECIES	21	ATP6V1A (ENSONIG00000014082)	ENSONIG00000036856	GRAMD1C (ENSONIG00000014079)	zdhhc23 (ENSONIG00000037801)	ccdc191 (ENSONIG00000014075)	qtrt2 (ENSONIG00000014074)	drd3 (ENSONIG00000014071)	ENSONIG00000014067	ENSONIG00000038343	ENSONIG00000041403	ENSONIG00000037274	CSTA (ENSONIG00000005767)	mix23 (ENSONIG00000005769)	fam162a (ENSONIG00000031989)	KPNA1 (ENSONIG00000005775)	NANOS2 (ENSONIG00000005777) ##22	ENSONIG00000042031	vipr1b (ENSONIG00000005778)	sec22c (ENSONIG00000038081)	NKTR (ENSONIG00000005793)	ZBTB47 (ENSONIG00000005797)	klhl40b (ENSONIG00000005798)	hhatlb (ENSONIG00000005799)	gars1 (ENSONIG00000005805)	ctdspl (ENSONIG00000005811)	VILL (ENSONIG00000005814)	plcd1a (ENSONIG00000005823)	ENSONIG00000005829	map3k22 (ENSONIG00000005831)	cry-dash (ENSONIG00000005833)	myd88 (ENSONIG00000005835)
Midas cichlid	MODERN SPECIES	1701																ENSACIG00000007105 ##22
Pomacentridae	ANCESTRAL SPECIES	11	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361
Pomacentridae_A	ANCESTRAL SPECIES	8	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361
Amphiprion	ANCESTRAL SPECIES	7	ENSGT00940000158810	ENSGT00390000015759	ENSGT00390000009110	ENSGT00550000074787.d.a.a	ENSGT00940000158013	ENSGT00940000156558.a.a	ENSGT00940000154110.b	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000165845.c.a	ENSGT00940000154826	ENSGT00940000155717	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00950000183135.A.a ##22	ENSGT00530000064862	ENSGT00940000168651	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00530000063629.b.c	ENSGT00940000153759.a.a.h	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00940000165361
Orange clownfish	MODERN SPECIES	14	boc (ENSAPEG00000019504)	USF3 (ENSAPEG00000019483)	naa50 (ENSAPEG00000019465)	ATP6V1A (ENSAPEG00000019428)	GRAMD1C (ENSAPEG00000019409)	zdhhc23b (ENSAPEG00000019399)	ccdc191 (ENSAPEG00000019373)	qtrt2 (ENSAPEG00000019285)	drd3 (ENSAPEG00000019252)	ENSAPEG00000019238	cst14a.1 (ENSAPEG00000019223)	CSTA (ENSAPEG00000019211)	mix23 (ENSAPEG00000019188)	fam162a (ENSAPEG00000019169)	KPNA1 (ENSAPEG00000019153)	ENSAPEG00000019139 ##22	ENSAPEG00000019117	ENSAPEG00000019100	vipr1b (ENSAPEG00000019050)	SEC22C (ENSAPEG00000019042)	NKTR (ENSAPEG00000019031)	ZBTB47 (ENSAPEG00000018994)	klhl40b (ENSAPEG00000018984)	hhatlb (ENSAPEG00000018958)	gars1 (ENSAPEG00000018903)	gars1 (ENSAPEG00000018850)	ctdspla (ENSAPEG00000018781)	VILL (ENSAPEG00000018324)	plcd1a (ENSAPEG00000018217)	ENSAPEG00000018173	map3k22 (ENSAPEG00000018071)
Clown anemonefish	MODERN SPECIES	624								drd3 (ENSAOCG00000009664)	ENSAOCG00000002224	cst14a.1 (ENSAOCG00000009630)	CSTA (ENSAOCG00000009622)	CSTA (ENSAOCG00000009607)	mix23 (ENSAOCG00000000582)	fam162a (ENSAOCG00000009455)	KPNA1 (ENSAOCG00000009438)	ENSAOCG00000009429 ##22	ENSAOCG00000009412	ENSAOCG00000001812	vipr1b (ENSAOCG00000009372)	SEC22C (ENSAOCG00000009258)	NKTR (ENSAOCG00000009242)	ZBTB47 (ENSAOCG00000009222)	klhl40b (ENSAOCG00000009192)	hhatlb (ENSAOCG00000009176)	gars1 (ENSAOCG00000002479)	gars1 (ENSAOCG00000009108)	ctdspla (ENSAOCG00000009055)	VILL (ENSAOCG00000009004)	plcd1a (ENSAOCG00000008952)	ENSAOCG00000008917	map3k22 (ENSAOCG00000008802)
Spiny chromis	MODERN SPECIES	960												ENSAPOG00000020387	mix23 (ENSAPOG00000020382)	fam162a (ENSAPOG00000020359)	KPNA1 (ENSAPOG00000020345)	NANOS2 (ENSAPOG00000020274) ##22	ENSAPOG00000020259	ENSAPOG00000020215	vipr1b (ENSAPOG00000020198)	SEC22C (ENSAPOG00000020189)	NKTR (ENSAPOG00000020183)	ZBTB47 (ENSAPOG00000020173)	klhl40b (ENSAPOG00000000572)	hhatlb (ENSAPOG00000020135)	gars1 (ENSAPOG00000020089)	gars1 (ENSAPOG00000019999)	ctdspla (ENSAPOG00000019906)	VILL (ENSAPOG00000019845)	plcd1a (ENSAPOG00000019733)	ENSAPOG00000019710
Bicolor damselfish	MODERN SPECIES	1447									drd3 (ENSSPAG00000004050)	ENSSPAG00000004034	ENSSPAG00000004032	ENSSPAG00000004007	mix23 (ENSSPAG00000003963)	fam162a (ENSSPAG00000003952)	KPNA1 (ENSSPAG00000003897)	NANOS2 (ENSSPAG00000003887) ##22	ENSSPAG00000003826	vipr1b (ENSSPAG00000003793)
Pinecone sodierfish	MODERN SPECIES	12	boc (ENSMMDG00005004971)	USF3 (ENSMMDG00005004967)	naa50 (ENSMMDG00005004955)	ATP6V1A (ENSMMDG00005004945)	ENSMMDG00005004938	GRAMD1C (ENSMMDG00005004936)	zdhhc23b (ENSMMDG00005004931)	ccdc191 (ENSMMDG00005004923)	qtrt2 (ENSMMDG00005004916)	drd3 (ENSMMDG00005004131)	ENSMMDG00005004071	cst14a.1 (ENSMMDG00005004058)	mix23 (ENSMMDG00005004048)	fam162a (ENSMMDG00005004037)	KPNA1 (ENSMMDG00005002653)	NANOS2 (ENSMMDG00005002544) ##22	ENSMMDG00005002534	vipr1b (ENSMMDG00005002519)	SEC22C (ENSMMDG00005002514)	NKTR (ENSMMDG00005002506)	ENSMMDG00005019347	ZBTB47 (ENSMMDG00005019346)	klhl40b (ENSMMDG00005019336)	hhatlb (ENSMMDG00005019331)	gars1 (ENSMMDG00005019326)	gars1 (ENSMMDG00005019314)	ctdspla (ENSMMDG00005019283)	VILL (ENSMMDG00005019207)	plcd1a (ENSMMDG00005017481)	ENSMMDG00005017458	acaa1 (ENSMMDG00005017256)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Salmoninae	ANCESTRAL SPECIES	48	ENSGT00940000160242.b.b	ENSGT00940000158230.b.b.c	ENSGT00940000155620.q.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000160023.g	ENSGT00940000159209.c	ENSGT00940000155689.p	ENSGT00940000170761	ENSGT00950000183094.b.b.d	ENSGT01050000244890.a.a.a.g.d	ENSGT00940000159758.h.b	ENSGT00390000007486.d	ENSGT00990000203802	ENSGT00390000017955.d.h	ENSGT00940000156245.a.b.c	ENSGT00950000183135.A.a ##22	ENSGT00940000153253.a.d	ENSGT00530000063576.B.a.b.a	ENSGT00940000173300	ENSGT00390000012916	ENSGT01030000234531.C	ENSGT00440000033589.d.b.d	ENSGT00940000161455	ENSGT00940000165985.e	ENSGT00940000159541	ENSGT00390000018554.f.a	ENSGT00940000166127.c	ENSGT00940000155239.e	ENSGT00940000159188.j	ENSGT00940000157683.e.a	ENSGT00940000162732.b
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00940000160242.b.b	ENSGT00940000158230.b.b.c	ENSGT00940000155620.q.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000160023.g	ENSGT00940000159209.c	ENSGT00940000155689.p	ENSGT00940000170761	ENSGT00950000183094.b.b.d	ENSGT01050000244890.a.a.a.g.d	ENSGT00940000159758.h.b	ENSGT00390000007486.d	ENSGT00990000203802	ENSGT00390000017955.d.h	ENSGT00940000156245.a.b.c	ENSGT00950000183135.A.a ##22	ENSGT00940000153253.a.d	ENSGT00530000063576.B.a.b.a	ENSGT00940000173300	ENSGT00390000012916	ENSGT01030000234531.C	ENSGT00440000033589.d.b.d	ENSGT00390000018554.f.a	ENSGT00940000166127.c	ENSGT00940000155239.e	ENSGT00940000159188.j	ENSGT00940000157683.e.a	ENSGT00940000162732.b	ENSGT00940000159344.k	ENSGT00940000156032.`b.b.a.b	ENSGT01030000234646.B.a.a.a.b.g.a.a
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00940000160242.b.b	ENSGT00940000158230.b.b.c	ENSGT00940000155620.q.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000160023.g	ENSGT00940000159209.c	ENSGT00940000155689.p	ENSGT00940000170761	ENSGT00950000183094.b.b.d	ENSGT01050000244890.a.a.a.g.d	ENSGT00940000159758.h.b	ENSGT00390000007486.d	ENSGT00990000203802	ENSGT00390000017955.d.h	ENSGT00940000156245.a.b.c	ENSGT00950000183135.A.a ##22	ENSGT00940000153253.a.d	ENSGT00530000063576.B.a.b.a	ENSGT00940000173300	ENSGT00390000012916	ENSGT01030000234531.C	ENSGT00440000033589.d.b.d	ENSGT00390000018554.f.a	ENSGT00940000166127.c	ENSGT00940000155239.e	ENSGT00940000159188.j	ENSGT00940000157683.e.a	ENSGT00940000162732.b	ENSGT01030000234597.b.b.b.a.a.b	ENSGT00940000159344.k	ENSGT00940000156032.`b.b.b
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000015161	ENSOMYG00000015206	ENSOMYG00000015306	ENSOMYG00000015315	ENSOMYG00000015328	ENSOMYG00000026008	ENSOMYG00000015348	ENSOMYG00000015419	ENSOMYG00000015422	grinaa (ENSOMYG00000015429)	mapk15 (ENSOMYG00000005633)	vps28 (ENSOMYG00000005826)	ENSOMYG00000005833	cap2 (ENSOMYG00000006398)	rbm24a (ENSOMYG00000049823)	ENSOMYG00000066338 ##22	ENSOMYG00000006993	ENSOMYG00000007068	uqcrb (ENSOMYG00000007126)	ENSOMYG00000060217	lrrc14b (ENSOMYG00000007172)	ENSOMYG00000007184	gatad1 (ENSOMYG00000007218)	chrc1 (ENSOMYG00000007244)	ago2 (ENSOMYG00000007677)	dlx5a (ENSOMYG00000008113)	dlx6a (ENSOMYG00000008153)	ENSOMYG00000066585	ENSOMYG00000075845	sem1 (ENSOMYG00000008161)	SLC25A13 (ENSOMYG00000065288)
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00940000160242.b.b.a	ENSGT00940000158230.b.b.c	ENSGT00940000155620.q.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000160023.g	ENSGT00940000159209.c	ENSGT00940000155689.p	ENSGT00940000170761	ENSGT00950000183094.b.b.d	ENSGT01050000244890.a.a.a.g.d	ENSGT00940000159758.h.b	ENSGT00390000007486.d	ENSGT00990000203802	ENSGT00390000017955.d.h	ENSGT00940000156245.a.b.c	ENSGT00950000183135.A.a ##22	ENSGT00940000153253.a.d	ENSGT00530000063576.B.a.b.a	ENSGT00940000173300	ENSGT00390000012916	ENSGT01030000234531.C	ENSGT00440000033589.d.b.d	ENSGT00390000018554.f.a	ENSGT00940000166127.c	ENSGT00940000155239.e	ENSGT00940000159188.j	ENSGT00940000157683.e.a	ENSGT00940000162732.b	ENSGT01030000234597.b.b.b.a.a.b	ENSGT00940000159344.k	ENSGT00940000156032.`b.b.b
Chinook salmon	MODERN SPECIES	4	ENSOTSG00005006203	ENSOTSG00005006202	rab25a (ENSOTSG00005006201)	ENSOTSG00005006156	lim2.5 (ENSOTSG00005006155)	TINAGL1 (ENSOTSG00005006145)	KCNQ4 (ENSOTSG00005006141)	nfyc (ENSOTSG00005006077)	ENSOTSG00005006071	ENSOTSG00005006070	grinaa (ENSOTSG00005006069)	mapk15 (ENSOTSG00005006065)	vps28 (ENSOTSG00005006062)	ENSOTSG00005006061	cap2 (ENSOTSG00005006060)	ENSOTSG00005006058 ##22	nup153 (ENSOTSG00005006057)	PTDSS1 (ENSOTSG00005006039)	ENSOTSG00005006033	uqcrb (ENSOTSG00005006032)	lrrc14b (ENSOTSG00005006030)	ENSOTSG00005006029	ENSOTSG00005006027	gatad1 (ENSOTSG00005006018)	chrac1 (ENSOTSG00005006015)	ago2 (ENSOTSG00005004840)	dlx5a (ENSOTSG00005004827)	dlx6a (ENSOTSG00005004826)	sem1 (ENSOTSG00005004824)	ENSOTSG00005004823	ENSOTSG00005004822
Coho salmon	MODERN SPECIES	8	ENSOKIG00005039394	rab25a (ENSOKIG00005039359)	ENSOKIG00005039251	LIM2 (ENSOKIG00005039195)	TINAGL1 (ENSOKIG00005039028)	KCNQ4 (ENSOKIG00005038726)	ENSOKIG00005038650	ENSOKIG00005038633	ENSOKIG00005038622	grinaa (ENSOKIG00005038594)	mapk15 (ENSOKIG00005038500)	vps28 (ENSOKIG00005038484)	ENSOKIG00005038475	cap2 (ENSOKIG00005038014)	rbm24a (ENSOKIG00005037976)	ENSOKIG00005037959 ##22	ENSOKIG00005037903	PTDSS1 (ENSOKIG00005037131)	ENSOKIG00005037090	uqcrb (ENSOKIG00005037037)	lrrc14b (ENSOKIG00005037022)	ENSOKIG00005037004	ENSOKIG00005036985	gatad1 (ENSOKIG00005036958)	chrac1 (ENSOKIG00005036943)	ago2 (ENSOKIG00005036580)	dlx5a (ENSOKIG00005036509)	dlx6a (ENSOKIG00005036489)	sem1 (ENSOKIG00005036474)	ENSOKIG00005036464	SLC25A13 (ENSOKIG00005036156)
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000160242.b.b	ENSGT00940000158230.b.b.c	ENSGT00940000155620.q.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000160023.g	ENSGT00940000159209.c	ENSGT00940000155689.p	ENSGT00940000170761	ENSGT00950000183094.b.b.d	ENSGT01050000244890.a.a.a.g.d	ENSGT00940000159758.h.b	ENSGT00390000007486.d	ENSGT00990000203802	ENSGT00390000017955.d.h	ENSGT00940000156245.a.b.c	ENSGT00950000183135.A.a ##22	ENSGT00940000153253.a.d	ENSGT00530000063576.B.a.b.a	ENSGT00390000005801.d	ENSGT00390000012916	ENSGT01030000234531.C	ENSGT00440000033589.d.b.d	ENSGT00390000018554.f.a	ENSGT00940000166127.c	ENSGT00940000155239.e	ENSGT00940000159188.j	ENSGT00940000157683.e.a	ENSGT00940000162732.b	ENSGT00940000159344.k	ENSGT00940000156032.`b.b.a.b	ENSGT01030000234646.B.a.a.a.b.g.a.a
River trout	MODERN SPECIES	27	ENSSTUG00000021476	lim2.5 (ENSSTUG00000021536)	TINAGL1 (ENSSTUG00000021559)	ENSSTUG00000021571	KCNQ4 (ENSSTUG00000021587)	ENSSTUG00000021719	nfyc (ENSSTUG00000021729)	ENSSTUG00000021818	RPRD1A (ENSSTUG00000021844)	grinaa (ENSSTUG00000021857)	mapk15 (ENSSTUG00000021931)	vps28 (ENSSTUG00000022001)	ENSSTUG00000022014	cap2 (ENSSTUG00000022036)	rbm24a (ENSSTUG00000022380)	ENSSTUG00000022384 ##22	nup153 (ENSSTUG00000022401)	PTDSS1 (ENSSTUG00000022439)	uqcrb (ENSSTUG00000022484)	ENSSTUG00000022520	lrrc14b (ENSSTUG00000022594)	ENSSTUG00000022602	ENSSTUG00000022627	gatad1 (ENSSTUG00000022652)	chrac1 (ENSSTUG00000022670)	ago2 (ENSSTUG00000022695)	dlx5a (ENSSTUG00000022872)	dlx6a (ENSSTUG00000022881)	sem1 (ENSSTUG00000035519)	SLC25A13 (ENSSTUG00000035528)	DYNC1I1 (ENSSTUG00000035595)
Atlantic salmon	MODERN SPECIES	19	RAB5A (ENSSSAG00000110045)	kat2b (ENSSSAG00000046492)	ENSSSAG00000046678	ENSSSAG00000046690	ENSSSAG00000046697	ubql4 (ENSSSAG00000046723)	ENSSSAG00000068152	ENSSSAG00000046830	ENSSSAG00000046856	ENSSSAG00000046875	ENSSSAG00000047124	grinaa (ENSSSAG00000047153)	ENSSSAG00000095343	cap2 (ENSSSAG00000047393)	ENSSSAG00000047472	ENSSSAG00000047460 ##22	PTDSS1 (ENSSSAG00000057950)	mterf3 (ENSSSAG00000047981)	uqcrb (ENSSSAG00000047957)	lrrc14b (ENSSSAG00000103287)	ENSSSAG00000094989	catsper4 (ENSSSAG00000048087)	ENSSSAG00000048099	ago2 (ENSSSAG00000048206)	dlx5a (ENSSSAG00000050594)	dlx6a (ENSSSAG00000086284)	SLC25A13 (ENSSSAG00000106435)	DYNC1I1 (ENSSSAG00000058478)	pdk4 (ENSSSAG00000064446)	asb4 (ENSSSAG00000065532)	PPP1R9A (ENSSSAG00000065549)
Huchen	MODERN SPECIES	757							ENSHHUG00000012386	nfyc (ENSHHUG00000012397)	ENSHHUG00000012471	RPRD1A (ENSHHUG00000012487)	grinaa (ENSHHUG00000012493)	mapk15 (ENSHHUG00000012510)	vps28 (ENSHHUG00000012618)	cap2 (ENSHHUG00000012633)	rbm24a (ENSHHUG00000012646)	ENSHHUG00000012653 ##22	ENSHHUG00000012656	ENSHHUG00000012658	ENSHHUG00000012659	ENSHHUG00000012661	PTDSS1 (ENSHHUG00000012664)	ENSHHUG00000012677	uqcrb (ENSHHUG00000012687)	lrrc14b (ENSHHUG00000012721)	ENSHHUG00000012726	ENSHHUG00000012736	gatad1 (ENSHHUG00000012754)	chrac1 (ENSHHUG00000012772)	ago2 (ENSHHUG00000012785)	dlx5a (ENSHHUG00000013408)	dlx6a (ENSHHUG00000013436)
Northern pike	MODERN SPECIES	9	zgc:91944 (ENSELUG00000018697)	ENSELUG00000018772	ENSELUG00000018796	ENSELUG00000003126	hpca (ENSELUG00000018829)	nt5c1aa (ENSELUG00000018854)	hpcal4 (ENSELUG00000018870)	fam49al (ENSELUG00000018965)	ENSELUG00000030961	ENSELUG00000033412	ENSELUG00000012134	ENSELUG00000028798	ENSELUG00000027674	ENSELUG00000000808	ENSELUG00000000809	NANOS2 (ENSELUG00000019091) ##22	nup153 (ENSELUG00000019108)	PTDSS1 (ENSELUG00000019160)	mterf3 (ENSELUG00000019194)	QCR7 (ENSELUG00000032559)	lrrc14b (ENSELUG00000000823)	ENSELUG00000001211	gatad1 (ENSELUG00000034426)	chrac1 (ENSELUG00000019288)	ago2 (ENSELUG00000019378)	dlx5a (ENSELUG00000019396)	dlx6a (ENSELUG00000000833)	sem1 (ENSELUG00000019441)	SLC25A13 (ENSELUG00000019498)	DYNC1I1 (ENSELUG00000019661)	pdk4 (ENSELUG00000019754)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Otophysi	ANCESTRAL SPECIES	27	ENSGT00940000160764	ENSGT00940000154849.a	ENSGT00440000037341.b.b	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00940000158431.a.a.a.a.b.a.c.b	ENSGT00940000160330	ENSGT00940000175063	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000017214	ENSGT00390000001189.a	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00950000183135.A.a ##22	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT01010000222313.A.b.b.b.a	ENSGT00940000155545.b	ENSGT00950000183155.a.a.a.b	ENSGT00530000063405.b.f	ENSGT00770000120972	ENSGT00970000194164	ENSGT00940000157083	ENSGT00940000159186	ENSGT00940000156097.b	ENSGT00950000182913.A.a.b.b	ENSGT00390000010003.g
Characiphysae	ANCESTRAL SPECIES	56	ENSGT00940000155206	ENSGT00940000160764	ENSGT00940000154849.a	ENSGT00440000037341.b.b	ENSGT00390000017045	ENSGT00940000158431.a.a.a.a.b.a.c.b	ENSGT00940000160330	ENSGT00940000175063	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000017214	ENSGT00390000001189.a	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00950000183135.A.a ##22	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00940000155853.d.a	ENSGT00940000156689	ENSGT00940000164999	ENSGT00940000159362	ENSGT00390000017030.b.a	ENSGT00940000155976.b.a.b	ENSGT00940000166104	ENSGT00390000013846.a.a	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b	ENSGT00940000155831.cb
Channel catfish	MODERN SPECIES	20	im:7138535 (ENSIPUG00000024006)	HNRNPUL1 (ENSIPUG00000024012)	SYMPK (ENSIPUG00000024020)	rsph6a (ENSIPUG00000024030)	napaa (ENSIPUG00000024032)	ENSIPUG00000024050	ENSIPUG00000024052	EHD2 (ENSIPUG00000024057)	selenow1 (ENSIPUG00000024060)	akap10 (ENSIPUG00000024062)	tmem211 (ENSIPUG00000024071)	spata22 (ENSIPUG00000024074)	c28h11orf54 (ENSIPUG00000024077)	aspa (ENSIPUG00000024083)	abr (ENSIPUG00000024090)	ENSIPUG00000024113 ##22	zswim7 (ENSIPUG00000024116)	adora2b (ENSIPUG00000024117)	specc1 (ENSIPUG00000024119)	DAB2IP (ENSIPUG00000024124)	ENSIPUG00000024126	ttll11 (ENSIPUG00000024127)	ENSIPUG00000024128	garnl3 (ENSIPUG00000024135)	zgc:63972 (ENSIPUG00000024144)	ENSIPUG00000024145	fibcd1b (ENSIPUG00000024146)	LAMC3 (ENSIPUG00000024147)	aif1l (ENSIPUG00000024152)	gfm2 (ENSIPUG00000024153)	hexb (ENSIPUG00000024169)
Characiphysae_b	ANCESTRAL SPECIES	56	ENSGT00940000160764	ENSGT00940000154849.a	ENSGT00440000037341.b.b	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00940000158431.a.a.a.a.b.a.c.b	ENSGT00940000160330	ENSGT00940000175063	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000017214	ENSGT00390000001189.a	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00950000183135.A.a ##22	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00940000155853.d.a	ENSGT00940000156689	ENSGT00940000164999	ENSGT00940000159362	ENSGT00390000017030.b.a	ENSGT00940000155976.b.a.b	ENSGT00940000166104	ENSGT00390000013846.a.a	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b	ENSGT00940000155831.cb
Characoidei	ANCESTRAL SPECIES	39	ENSGT00940000155206	ENSGT00940000160764	ENSGT00940000154849.a	ENSGT00440000037341.b.b	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00940000158431.a.a.a.a.b.a.c.b	ENSGT00940000161069	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000017214	ENSGT00390000001189.a	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00950000183135.A.a ##22	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00940000155853.d.a	ENSGT00940000156689	ENSGT00940000164999	ENSGT00940000159362	ENSGT00390000017030.b.a	ENSGT00940000155976.b.a.b	ENSGT00880000138014.a	ENSGT00940000166104	ENSGT00390000013846.a.a	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b
Red-bellied piranha	MODERN SPECIES	2	rcc1l (ENSPNAG00000005877)	castor2 (ENSPNAG00000016806)	RSPH6A (ENSPNAG00000016832)	napaa (ENSPNAG00000016904)	ENSPNAG00000016953	EHD2 (ENSPNAG00000016978)	selenow1 (ENSPNAG00000016995)	AKAP10 (ENSPNAG00000017025)	ENSPNAG00000017035	ENSPNAG00000017045	zgc:85789 (ENSPNAG00000017098)	ENSPNAG00000017100	aspa (ENSPNAG00000017112)	ENSPNAG00000017122	ABR (ENSPNAG00000017401)	ENSPNAG00000017440 ##22	zswim7 (ENSPNAG00000017450)	adora2b (ENSPNAG00000017460)	SPECC1 (ENSPNAG00000017516)	dab2ipb (ENSPNAG00000007041)	ttll11 (ENSPNAG00000017759)	ENSPNAG00000017780	garnl3 (ENSPNAG00000018040)	zgc:63972 (ENSPNAG00000018062)	ENSPNAG00000018074	fibcd1b (ENSPNAG00000018104)	si:ch211-122f10.4 (ENSPNAG00000018259)	ENSPNAG00000018368	aif1l (ENSPNAG00000018392)	gfm2 (ENSPNAG00000018467)	hexb (ENSPNAG00000018571)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000042764	im:7138535 (ENSAMXG00000042035)	HNRNPUL1 (ENSAMXG00000013644)	SYMPK (ENSAMXG00000013677)	RSPH6A (ENSAMXG00000013707)	napaa (ENSAMXG00000042669)	ENSAMXG00000013722	EHD2 (ENSAMXG00000013748)	selenow1 (ENSAMXG00000042466)	AKAP10 (ENSAMXG00000033348)	ENSAMXG00000026322	ENSAMXG00000038823	zgc:85789 (ENSAMXG00000013791)	aspa (ENSAMXG00000041749)	ABR (ENSAMXG00000037585)	ENSAMXG00000042358 ##22	zswim7 (ENSAMXG00000013916)	ENSAMXG00000034817	CDH7 (ENSAMXG00000038551)	IMPA1 (ENSAMXG00000006472)	ENSAMXG00000006460	ENSAMXG00000006447	mppe1 (ENSAMXG00000006372)	ENSAMXG00000037077	gnal (ENSAMXG00000037115)	elovl2 (ENSAMXG00000006127)	gcm2 (ENSAMXG00000006073)	ENSAMXG00000036646	mak (ENSAMXG00000006037)	tmem14ca (ENSAMXG00000034552)	ENSAMXG00000040777
Electric eel	MODERN SPECIES	76	im:7138535 (ENSEEEG00000004546)	HNRNPUL1 (ENSEEEG00000004548)	SYMPK (ENSEEEG00000004564)	RSPH6A (ENSEEEG00000004754)	napaa (ENSEEEG00000004774)	ENSEEEG00000004886	ENSEEEG00000004887	EHD2 (ENSEEEG00000004888)	ENSEEEG00000005021	AKAP10 (ENSEEEG00000005032)	ENSEEEG00000005313	ENSEEEG00000005314	zgc:85789 (ENSEEEG00000005323)	aspa (ENSEEEG00000005343)	ABR (ENSEEEG00000005393)	NANOS2 (ENSEEEG00000006893) ##22	zswim7 (ENSEEEG00000006894)	adora2b (ENSEEEG00000006897)	SPECC1 (ENSEEEG00000006899)	dab2ipb (ENSEEEG00000006903)	ttll11 (ENSEEEG00000006984)	ENSEEEG00000006985	garnl3 (ENSEEEG00000006987)	zgc:63972 (ENSEEEG00000006988)	fibcd1b (ENSEEEG00000006990)	ENSEEEG00000006992	aif1l (ENSEEEG00000006994)	gfm2 (ENSEEEG00000006995)	hexb (ENSEEEG00000007002)	ENSEEEG00000007306	ENSEEEG00000007315
Cyprinoidei	ANCESTRAL SPECIES	37	ENSGT00940000155206	ENSGT00940000160764	ENSGT00940000154849.a	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00940000158431.a.a.a.a.b.a.c.b	ENSGT00940000160330	ENSGT00940000175063	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000017214	ENSGT00990000210050	ENSGT00390000001189.a	ENSGT00940000153491.b.b.a	ENSGT00950000183135.A.a ##22	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT01010000222313.A.b.b.b.a	ENSGT00940000155545.b	ENSGT00950000183155.a.a.a.b	ENSGT00530000063405.b.f	ENSGT00940000159729	ENSGT00940000155591.i	ENSGT00940000155178	ENSGT00940000155434	ENSGT00940000155670	ENSGT00940000161616.c	ENSGT00940000156744.p
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	21	ENSGT00950000182946.lb.a.f	ENSGT00390000017045.m	ENSGT00500000044869.a.b.q	ENSGT00390000005826.a.a.l.a	ENSGT00940000158431.a.a.a.a.b.a.c.b.f	ENSGT00940000160330.j	ENSGT00940000159256.o.o.b	ENSGT00940000161069.a.a	ENSGT00390000015077.h	ENSGT00990000203589.a.a.d	ENSGT00390000018151.e	ENSGT00390000017214	ENSGT00390000001189.a.b	ENSGT00940000153491.b.b.a.g.a	ENSGT00990000205129	ENSGT00950000183135.A.a.o ##22	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a.g	ENSGT01030000234555.a.a.a.c.a.h	ENSGT00940000153592.B.a.bb	ENSGT00390000016067.o	ENSGT01010000222313.A.b.b.b.a.c	ENSGT00940000155545.b.d.b	ENSGT00950000183155.a.a.a.b.a	ENSGT00530000063405.b.f.c	ENSGT00940000159729.h	ENSGT00940000155591.i.h	ENSGT00940000155178.j.a	ENSGT00940000155434.k.a	ENSGT00940000155670.f	ENSGT00940000161616.c.j.b.a
Cyprininae_a	ANCESTRAL SPECIES	75	ENSGT00950000182946.lb.a.f.a	ENSGT00390000017045.m	ENSGT00500000044869.a.b.q	ENSGT00390000005826.a.a.l.a	ENSGT00940000158431.a.a.a.a.b.a.c.b.f	ENSGT00940000160330.j	ENSGT00940000159256.o.o.b	ENSGT00940000161069.a.a	ENSGT00390000015077.h	ENSGT00990000203589.a.a.d	ENSGT00390000018151.e	ENSGT00390000017214	ENSGT00390000001189.a.b	ENSGT00940000153491.b.b.a.g.a	ENSGT00990000205129	ENSGT00950000183135.A.a.o ##22	ENSGT00390000017523.c	ENSGT01030000234555.a.a.a.c.a.g	ENSGT00940000153592.B.a.cb	ENSGT00390000016067.p	ENSGT01010000222313.A.b.b.b.a.d	ENSGT00940000155545.b.d.a	ENSGT00950000183155.a.a.a.b.b	ENSGT00530000063405.b.f.d	ENSGT00940000159729.g	ENSGT00940000155591.i.g	ENSGT00940000155178.j.b	ENSGT00940000155434.k.b	ENSGT00940000155670.e	ENSGT00940000161616.c.j.b.b	ENSGT00530000064123.h.a.a
Common carp reference	MODERN SPECIES	7	im:7138535 (ENSCCRG00000021102)	ENSCCRG00000054409	ENSCCRG00000015495	ENSCCRG00000015311	napaa (ENSCCRG00000015245)	ENSCCRG00000068304	ENSCCRG00000072568	selenow1 (ENSCCRG00000014951)	ENSCCRG00000014943	ENSCCRG00000076793	ENSCCRG00000025384	zgc:85789 (ENSCCRG00000025392)	aspa (ENSCCRG00000066540)	ENSCCRG00000047806	ENSCCRG00000014932	ENSCCRG00000014926 ##22	zswim7 (ENSCCRG00000066509)	ENSCCRG00000014880	ENSCCRG00000080638	ENSCCRG00000063549	ENSCCRG00000014729	ENSCCRG00000026398	ENSCCRG00000054381	ENSCCRG00000026371	gsnb (ENSCCRG00000041230)	rab14 (ENSCCRG00000042187)	CNTRL (ENSCCRG00000053196)	ENSCCRG00000026198	ENSCCRG00000019087	ENSCCRG00000068711	ENSCCRG00000061068
Goldfish	MODERN SPECIES	44	RASL10B (ENSCARG00000029810)	im:7138535 (ENSCARG00000029815)	ENSCARG00000029881	ENSCARG00000031482	ENSCARG00000031507	SYMPK (ENSCARG00000031570)	RSPH6A (ENSCARG00000031941)	napaa (ENSCARG00000000189)	selenow1 (ENSCARG00000000209)	AKAP10 (ENSCARG00000000264)	ENSCARG00000000294	ENSCARG00000000308	zgc:85789 (ENSCARG00000000318)	aspa (ENSCARG00000000328)	ABR (ENSCARG00000000427)	ENSCARG00000000551 ##22	zswim7 (ENSCARG00000000557)	adora2b (ENSCARG00000000563)	SPECC1 (ENSCARG00000000568)	TIMM22 (ENSCARG00000000572)	ENSCARG00000000578	dtx2 (ENSCARG00000000583)	GTF2IRD1 (ENSCARG00000000591)	CLIP2 (ENSCARG00000000676)	rasa4 (ENSCARG00000001009)	ENSCARG00000001188	nup88 (ENSCARG00000001194)	rabep1 (ENSCARG00000001259)	derl2 (ENSCARG00000001566)	mis12 (ENSCARG00000001572)	ENSCARG00000001575
Cyprininae	ANCESTRAL SPECIES	162	ENSGT00940000157823.jb.b	ENSGT00390000017045.n	ENSGT00500000044869.a.b.r	ENSGT00390000005826.a.a.l.b	ENSGT00940000158431.a.a.a.a.b.a.c.b.e	ENSGT00940000160330.i	ENSGT00940000159256.o.o.a	ENSGT00940000175063	ENSGT00940000161069.a.b	ENSGT00390000015077.g	ENSGT00990000203589.a.a.c	ENSGT00970000197451	ENSGT00990000210050	ENSGT00390000001189.a.a	ENSGT00940000153491.b.b.a.g.b	ENSGT00950000183135.A.a.p ##22
Goldfish	MODERN SPECIES	23	im:7138535 (ENSCARG00000017729)	HNRNPUL1 (ENSCARG00000016799)	napaa (ENSCARG00000016732)	ENSCARG00000016727	ENSCARG00000016721	EHD2 (ENSCARG00000016717)	selenow1 (ENSCARG00000016709)	AKAP10 (ENSCARG00000016645)	ENSCARG00000016632	ENSCARG00000016626	ENSCARG00000016614	ENSCARG00000016603	ENSCARG00000016597	aspa (ENSCARG00000016584)	ABR (ENSCARG00000012507)	ENSCARG00000012352 ##22	ENSCARG00000012339	adora2b (ENSCARG00000012331)	SPECC1 (ENSCARG00000012318)	TIMM22 (ENSCARG00000012305)	ENSCARG00000012299	ENSCARG00000012032	TECTA (ENSCARG00000011687)	TBCEL (ENSCARG00000011662)	gsnb (ENSCARG00000010407)	rab14 (ENSCARG00000010341)	ENSCARG00000010334	ENSCARG00000010314	prdm12b (ENSCARG00000010264)	surf4l (ENSCARG00000010239)	ciz1b (ENSCARG00000010222)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00440000037341.b.b.c	ENSGT00940000157823.jb.b	ENSGT00390000017045.n	ENSGT00500000044869.a.b.r	ENSGT00390000005826.a.a.l.b	ENSGT00940000158431.a.a.a.a.b.a.c.b.e	ENSGT00940000160330.i	ENSGT00940000159256.o.o.a	ENSGT00940000175063	ENSGT00390000015077.g	ENSGT00990000203589.a.a.c	ENSGT00970000197451	ENSGT00990000210050	ENSGT00390000001189.a.a	ENSGT00940000153491.b.b.a.g.b	ENSGT00950000183135.A.a.p ##22	ENSGT00390000017523.d	ENSGT01030000234555.a.a.a.c.a.h	ENSGT00940000153592.B.a.bb	ENSGT00390000016067.o	ENSGT01010000222313.A.b.b.b.a.c	ENSGT00940000155545.b.c	ENSGT00950000183155.a.a.a.b.a	ENSGT00530000063405.b.f.c	ENSGT00940000159729.h	ENSGT00940000155591.i.h	ENSGT00940000155178.j.a	ENSGT00940000155434.k.a	ENSGT00940000155670.f	ENSGT00940000161616.c.j.b.a	ENSGT00530000064123.h.a.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	15	ENSCCRG00000014517	ENSCCRG00000075038	ENSCCRG00000071080	napaa (ENSCCRG00000014544)	ENSCCRG00000075265	EHD2 (ENSCCRG00000014928)	ENSCCRG00000007726	ENSCCRG00000062815	ENSCCRG00000082713	ENSCCRG00000060567	ENSCCRG00000071106	ENSCCRG00000074738	aspa (ENSCCRG00000052787)	ENSCCRG00000046296	ENSCCRG00000043369	ENSCCRG00000054716 ##22	zswim7 (ENSCCRG00000014889)	adora2b (ENSCCRG00000063856)	ENSCCRG00000070097	ENSCCRG00000042434	ENSCCRG00000031175	ENSCCRG00000073860	ENSCCRG00000057895	gsnb (ENSCCRG00000026232)	rab14 (ENSCCRG00000064670)	CNTRL (ENSCCRG00000042195)	ENSCCRG00000041172	prdm12b (ENSCCRG00000065826)	surf4l (ENSCCRG00000014626)	ciz1b (ENSCCRG00000014614)	dnm1b (ENSCCRG00000013708)
Common carp reference	MODERN SPECIES	9	GPR149 (ENSCCRG00000050766)	DHX36 (ENSCCRG00000014768)	ENSCCRG00000020042	ENSCCRG00000055489	ENSCCRG00000078308	ENSCCRG00000016876	mvda (ENSCCRG00000077134)	ENSCCRG00000004375	tcf25 (ENSCCRG00000081336)	ENSCCRG00000079185	ENSCCRG00000064415	ENSCCRG00000056323	ENSCCRG00000044104	ENSCCRG00000080307	ENSCCRG00000039102	ENSCCRG00000033823 ##22	ENSCCRG00000078381	ENSCCRG00000005860	ENSCCRG00000047014	ENSCCRG00000024977	ENSCCRG00000059218	ENSCCRG00000036901	ENSCCRG00000058205	ENSCCRG00000028796 ##22	ENSCCRG00000069962	ENSCCRG00000048271	ENSCCRG00000065148	ENSCCRG00000072079	ENSCCRG00000058783	ENSCCRG00000042257	ENSCCRG00000058862
Golden-line barbel	MODERN SPECIES	202	ENSSGRG00000005039	SYMPK (ENSSGRG00000005045)	ENSSGRG00000005050	napaa (ENSSGRG00000005054)	ENSSGRG00000005057	EHD2 (ENSSGRG00000005063)	ENSSGRG00000005593	AKAP10 (ENSSGRG00000005599)	ENSSGRG00000005733	ENSSGRG00000005735	ENSSGRG00000005739	zgc:85789 (ENSSGRG00000005753)	ENSSGRG00000005754	aspa (ENSSGRG00000005755)	ABR (ENSSGRG00000005790)	ENSSGRG00000008663 ##22	ENSSGRG00000008665	adora2b (ENSSGRG00000008667)	SPECC1 (ENSSGRG00000008669)	TIMM22 (ENSSGRG00000008672)	ENSSGRG00000008678	TECTA (ENSSGRG00000008683)	TBCEL (ENSSGRG00000008704)	ENSSGRG00000008706	gsnb (ENSSGRG00000008720)	rab14 (ENSSGRG00000009706)	ENSSGRG00000009738	ENSSGRG00000009740	prdm12b (ENSSGRG00000009741)	ciz1b (ENSSGRG00000009742)	ENSSGRG00000009743
Zebrafish	MODERN SPECIES	20	SYMPK (ENSDARG00000059553)	RSPH6A (ENSDARG00000067606)	napaa (ENSDARG00000067605)	ENSDARG00000094214	ENSDARG00000052188	EHD2 (ENSDARG00000035137)	selenow1 (ENSDARG00000035136)	AKAP10 (ENSDARG00000059549)	ENSDARG00000094587	ENSDARG00000098537	C5H11orf54 (ENSDARG00000110147)	pho (ENSDARG00000035133)	aspa (ENSDARG00000005154)	ABR (ENSDARG00000059587)	abr (ENSDARG00000095180)	ENSDARG00000116802 ##22	zswim7 (ENSDARG00000067608)	adora2b (ENSDARG00000002533)	SPECC1 (ENSDARG00000029480)	TIMM22 (ENSDARG00000091413)	ENSDARG00000098860	ENSDARG00000114187	ENSDARG00000074120	TECTA (ENSDARG00000059558)	TBCEL (ENSDARG00000019525)	ENSDARG00000094107	gsnb (ENSDARG00000045262)	ENSDARG00000092508	ENSDARG00000094043	ENSDARG00000093403	ttf1.1 (ENSDARG00000091967)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Atlantic herring	MODERN SPECIES	4	fhip2a (ENSCHAG00000019387)	ttl (ENSCHAG00000019358)	fignl1 (ENSCHAG00000019351)	ikzf1 (ENSCHAG00000019263)	SPATA48 (ENSCHAG00000019249)	vwc2 (ENSCHAG00000019241)	zgc:110045 (ENSCHAG00000019196)	MOCOS (ENSCHAG00000018708)	ENSCHAG00000018659	ENSCHAG00000018650	ENSCHAG00000018617	ENSCHAG00000018493	ENSCHAG00000018461	ENSCHAG00000018438	ENSCHAG00000018245	ENSCHAG00000018221 ##22	ENSCHAG00000018151	ENSCHAG00000018044	MTLN (ENSCHAG00000018035)	ENSCHAG00000017897	CACUL1 (ENSCHAG00000017883) #21	MYPN (ENSCHAG00000017715)	atoh7 (ENSCHAG00000017707)	PKD2L1 (ENSCHAG00000017632)	tial1 (ENSCHAG00000017561)	ENSCHAG00000010078	actn2b (ENSCHAG00000008103)	p4ha1b (ENSCHAG00000005865)	CHRM3 (ENSCHAG00000005774)	ENSCHAG00000005765	ENSCHAG00000005757
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000183135.A.a ##22
Asian bonytongue	MODERN SPECIES	1	meis3 (ENSSFOG00015006931)	ENSSFOG00015006973	sirt2 (ENSSFOG00015006983)	dmac2 (ENSSFOG00015007022)	ENSSFOG00015007028	si:ch1073-429i10.3 (ENSSFOG00015003112)	ENSSFOG00015024886	nop53 (ENSSFOG00015007062)	GJD2 (ENSSFOG00015007095)	nfkbib (ENSSFOG00015029151)	psma6l (ENSSFOG00015007124)	sars2 (ENSSFOG00015007160)	si:dkey-260j18.2 (ENSSFOG00015025327)	slc5a2 (ENSSFOG00015007244)	fbxo46 (ENSSFOG00015007577)	ENSSFOG00015032685 ##22	coq8b (ENSSFOG00015007611)	numbl (ENSSFOG00015007674)	ENSSFOG00015007714	ENSSFOG00015007752	dpf1 (ENSSFOG00015007798)	zgc:162193 (ENSSFOG00015007884)	pnkp (ENSSFOG00015007907)	ENSSFOG00015007959	ENSSFOG00015007975	MFRP (ENSSFOG00015008003)	ENSSFOG00015008018	ENSSFOG00015008024	ENSSFOG00015024919	ENSSFOG00015008044	ENSSFOG00015027474
P. kingsleyae	MODERN SPECIES	41	SERPINH1 (ENSPKIG00000006119)	TSKU (ENSPKIG00000006159)	acer3 (ENSPKIG00000006173)	ENSPKIG00000006205	ENSPKIG00000006293	mmp30 (ENSPKIG00000006451)	acat1 (ENSPKIG00000006487)	tmprss2 (ENSPKIG00000006537)	ENSPKIG00000006572	PCP4 (ENSPKIG00000006653)	ENSPKIG00000006690	get1 (ENSPKIG00000006725)	rps25 (ENSPKIG00000006739)	SLC37A4 (ENSPKIG00000006779)	B3GAT1 (ENSPKIG00000006876)	ENSPKIG00000006934 ##22	ENSPKIG00000006958	MSI2 (ENSPKIG00000007038)	ENSPKIG00000007175	ENSPKIG00000007212	KSR1 (ENSPKIG00000007252)	vezf1b (ENSPKIG00000007331)	ENSPKIG00000007376	ENSPKIG00000007413	SEZ6 (ENSPKIG00000007481)	PHF12 (ENSPKIG00000007525)	dhrs13a.2 (ENSPKIG00000007593)	MRM1 (ENSPKIG00000007654)	ENSPKIG00000007670	ACACA (ENSPKIG00000007701)	ENSPKIG00000007744
Reedfish	MODERN SPECIES		ENSECRG00000008101	ENSECRG00000008112	ENSECRG00000008145	cmasa (ENSECRG00000008155)	IAPP (ENSECRG00000008171)	pyroxd1 (ENSECRG00000008181)	recql (ENSECRG00000008205)	golt1bb (ENSECRG00000008243)	SPX (ENSECRG00000008257)	gys2 (ENSECRG00000008276)	ENSECRG00000008298	ldhba (ENSECRG00000008319)	kcnj8 (ENSECRG00000008332)	abcc9 (ENSECRG00000000506)	slco1f2 (ENSECRG00000000637)	ENSECRG00000000660 ##22	tmbim4 (ENSECRG00000000669)	IRAK3 (ENSECRG00000000693)	HELB (ENSECRG00000000722)	ENSECRG00000000744	grip1 (ENSECRG00000000764)	ENSECRG00000000800	cand1 (ENSECRG00000000821)	ENSECRG00000000849	vhll (ENSECRG00000000866)	wif1 (ENSECRG00000000885)	lemd3 (ENSECRG00000000912)	msrb3 (ENSECRG00000000954)	ENSECRG00000001000	llph (ENSECRG00000001032)	plekha5 (ENSECRG00000001079)
Gnathostomata	ANCESTRAL SPECIES	353																ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT01050000244879.a.b	ENSGT00940000160377	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000161012	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1665				ENSCMIG00000016399	ENSCMIG00000016401	CDC37 (ENSCMIG00000016408)	TYK2 (ENSCMIG00000016465)	RAVER1 (ENSCMIG00000016557)	fdx2 (ENSCMIG00000016563)	ENSCMIG00000016568	ENSCMIG00000016569	ENSCMIG00000000200	ENSCMIG00000000211	ENSCMIG00000000259	ENSCMIG00000000270	ENSCMIG00000000277 ##22	ENSCMIG00000000287 ##22	CC2D1A (ENSCMIG00000000295)	ENSCMIG00000000320	ENSCMIG00000000325	ENSCMIG00000000335	ENSCMIG00000000372	ENSCMIG00000000386	rfx1a (ENSCMIG00000000422)	carm1 (ENSCMIG00000000561)	smarca4a (ENSCMIG00000001355)	LDLR (ENSCMIG00000003383)	ENSCMIG00000003397	ENSCMIG00000003400	DOCK6 (ENSCMIG00000003754)	ENSCMIG00000004749
Elephant shark	MODERN SPECIES	2103																ENSCMIG00000010869 ##22	psen1 (ENSCMIG00000010871)
Elephant shark	MODERN SPECIES	1665			ENSCMIG00000016399	ENSCMIG00000016401	CDC37 (ENSCMIG00000016408)	TYK2 (ENSCMIG00000016465)	RAVER1 (ENSCMIG00000016557)	fdx2 (ENSCMIG00000016563)	ENSCMIG00000016568	ENSCMIG00000016569	ENSCMIG00000000200	ENSCMIG00000000211	ENSCMIG00000000259	ENSCMIG00000000270	ENSCMIG00000000277 ##22	ENSCMIG00000000287 ##22	CC2D1A (ENSCMIG00000000295)	ENSCMIG00000000320	ENSCMIG00000000325	ENSCMIG00000000335	ENSCMIG00000000372	ENSCMIG00000000386	rfx1a (ENSCMIG00000000422)	carm1 (ENSCMIG00000000561)	smarca4a (ENSCMIG00000001355)	LDLR (ENSCMIG00000003383)	ENSCMIG00000003397	ENSCMIG00000003400	DOCK6 (ENSCMIG00000003754)	ENSCMIG00000004749	ENSCMIG00000004753
Euteleostomi	ANCESTRAL SPECIES	94													ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000153846.a.b	ENSGT00940000156166.b	ENSGT00530000063861.a	ENSGT00940000158914
Sarcopterygii	ANCESTRAL SPECIES	391													ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a
Tetrapoda	ANCESTRAL SPECIES	8									ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000156518.C	ENSGT00900000141021.b.b	ENSGT00940000163101	ENSGT00940000159327
Amniota	ANCESTRAL SPECIES	31	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00940000167422	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT01030000234559.a.a.b.a	ENSGT00940000166147	ENSGT00390000009916	ENSGT00940000154990	ENSGT00940000154912
Sauria	ANCESTRAL SPECIES	22	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a
Archelosauria	ANCESTRAL SPECIES	28	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000167422	ENSGT00940000160312
Archosauria	ANCESTRAL SPECIES	34	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00940000158445	ENSGT00940000155764.C	ENSGT00530000063679.B	ENSGT00940000163421	ENSGT00940000156719	ENSGT00940000158178	ENSGT00940000159089
Aves	ANCESTRAL SPECIES	34	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00940000158445	ENSGT00940000155764.C	ENSGT00530000063679.B	ENSGT00940000163421	ENSGT00940000156719	ENSGT00980000198857	ENSGT00940000158178
Neognathae	ANCESTRAL SPECIES	34	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00940000158445	ENSGT00940000155764.C	ENSGT00530000063679.B	ENSGT00940000163421	ENSGT00940000156719	ENSGT00980000198857	ENSGT00940000158178
Galloanserae	ANCESTRAL SPECIES	50														ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00950000183135.A.b ##22	ENSGT00390000018759	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a	ENSGT00940000159979	ENSGT00940000161423	ENSGT00940000158718	ENSGT00940000155021	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154063.C.a.b	ENSGT00940000159125
Phasianidae	ANCESTRAL SPECIES	41														ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00950000183135.A.b ##22	ENSGT00390000018759	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a	ENSGT00940000156787.v	ENSGT00940000161423	ENSGT00940000158718	ENSGT00940000155021	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154063.C.a.b	ENSGT00940000159125
Phasianidae_b	ANCESTRAL SPECIES	46														ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00950000183135.A.b ##22	ENSGT00390000018759	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a	ENSGT00940000156787.v	ENSGT00940000161423	ENSGT00940000158718	ENSGT00940000155021	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154063.C.a.b	ENSGT00940000159125
Chicken	MODERN SPECIES	23	OLFM2 (ENSGALG00010002713)	PIN1 (ENSGALG00010002703)	UBL5 (ENSGALG00010002682)	FBXL12 (ENSGALG00010002658)	ENSGALG00010002629	ENSGALG00010002606	ENSGALG00010002597	ATP13A1 (ENSGALG00010002581)	MVB12A (ENSGALG00010002573)	DSN1 (ENSGALG00010003968)	PBX4 (ENSGALG00010002547)	LPAR2 (ENSGALG00010002533)	MAST1 (ENSGALG00010002518)	YJU2B (ENSGALG00010003249)	MRI1 (ENSGALG00010003248)	ENSGALG00010003245 ##22	ENSGALG00010003211	ENSGALG00010003208	CC2D1A (ENSGALG00010003191)	DCAF15 (ENSGALG00010002857)	TECR (ENSGALG00010003933)	DNAJB1 (ENSGALG00010003909)	GIPC1 (ENSGALG00010003887)	AKAP8 (ENSGALG00010003875)	AKAP8L (ENSGALG00010003865)	RASAL3 (ENSGALG00010003842)	RASAL3 (ENSGALG00010003815)	PGLYRP2 (ENSGALG00010003811)	CYP4F11 (ENSGALG00010003634)	MCOLN1 (ENSGALG00010003627)	PNPLA6 (ENSGALG00010003585)
Japanese quail	MODERN SPECIES	21	ENSCJPG00005002752	PLA2G7 (ENSCJPG00005002760)	IMP3 (ENSCJPG00005002767)	ANKRD66 (ENSCJPG00005002770)	ENSCJPG00005002772	ENSCJPG00005002775	ENSCJPG00005002779	TNFRSF21 (ENSCJPG00005002782)	CD2AP (ENSCJPG00005002786)	ENSCJPG00005002798	OPN5 (ENSCJPG00005002822)	PTCHD4 (ENSCJPG00005002825)	EVA1A (ENSCJPG00005002833)	MRPL19 (ENSCJPG00005002842)	GCFC2 (ENSCJPG00005002848)	ENSCJPG00005002856 ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000183135.A.b ##22
Duck	MODERN SPECIES	184																NANOS3 (ENSAPLG00000016829) ##22
Neognathae_b	ANCESTRAL SPECIES	36	ENSGT00940000160152	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000156051	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00940000158445	ENSGT00940000155764.C	ENSGT00530000063679.B	ENSGT00940000163421
Passeriformes	ANCESTRAL SPECIES	57										ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000156051	ENSGT00940000161046	ENSGT00940000156887
Great tit	MODERN SPECIES	383															ENSPMJG00000002661	ENSPMJG00000002667 ##22	ENSPMJG00000002674
Passeriformes_d	ANCESTRAL SPECIES	52										ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000156051	ENSGT00940000161046	ENSGT00940000156887
Passeriformes_g	ANCESTRAL SPECIES	68										ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000156051	ENSGT00940000161046	ENSGT00940000156887
Passeroidea	ANCESTRAL SPECIES	71										ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000156051	ENSGT00940000161046	ENSGT00940000156887
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	24	ENSTGUG00000021246	ENSTGUG00000025729	DCAF15 (ENSTGUG00000021982)	ENSTGUG00000021151	ENSTGUG00000021653 ##22	ENSTGUG00000028643	ENSTGUG00000022843	ENSTGUG00000028292	ENSTGUG00000023872	ENSTGUG00000019523	ENSTGUG00000019492	ENSTGUG00000022014	ENSTGUG00000020999	MRI1 (ENSTGUG00000023850)	ENSTGUG00000026105	ENSTGUG00000026664 ##22	ENSTGUG00000027108	ENSTGUG00000025800	ENSTGUG00000022427	ENSTGUG00000029364	ENSTGUG00000019803	ENSTGUG00000019294	ENSTGUG00000028983	PSPN (ENSTGUG00000023979)	ENSTGUG00000025772	ENSTGUG00000028023	ENSTGUG00000015488	ENSTGUG00000022394	ENSTGUG00000027968	ENSTGUG00000021955	ENSTGUG00000019875
Zebra finch	MODERN SPECIES	24	ENSTGUG00000029364	ENSTGUG00000022427	ENSTGUG00000025800	ENSTGUG00000027108	ENSTGUG00000026664 ##22	ENSTGUG00000026105	MRI1 (ENSTGUG00000023850)	ENSTGUG00000020999	ENSTGUG00000022014	ENSTGUG00000019492	ENSTGUG00000019523	ENSTGUG00000023872	ENSTGUG00000028292	ENSTGUG00000022843	ENSTGUG00000028643	ENSTGUG00000021653 ##22	ENSTGUG00000021151	DCAF15 (ENSTGUG00000021982)	ENSTGUG00000025729	ENSTGUG00000021246	ENSTGUG00000027676	ENSTGUG00000021681	ENSTGUG00000023438	ENSTGUG00000019440	ENSTGUG00000024375	ENSTGUG00000024510	ENSTGUG00000021256	ENSTGUG00000024690	ENSTGUG00000019450	ENSTGUG00000021000	ENSTGUG00000026690
Flycatcher	MODERN SPECIES	334															ENSFALG00000024876	ENSFALG00000027506 ##22	ENSFALG00000027665
Neognathae_c	ANCESTRAL SPECIES	41	ENSGT00390000010768	ENSGT00940000160152	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b
Kakapo	MODERN SPECIES	79	TRIR (ENSSHBG00005001110)	TNPO2 (ENSSHBG00005001113)	FBXW9 (ENSSHBG00005001115)	DHPS (ENSSHBG00005013289)	WDR83 (ENSSHBG00005013301)	WDR83OS (ENSSHBG00005013314)	MAN2B1 (ENSSHBG00005013324)	TRMT1 (ENSSHBG00005013351)	NACC1 (ENSSHBG00005013377)	ENSSHBG00005013387	CACNA1A (ENSSHBG00005013400)	ENSSHBG00005013417	YJU2B (ENSSHBG00005013431)	MRI1 (ENSSHBG00005013448)	ENSSHBG00005013463	NANOS3 (ENSSHBG00005013479) ##22	ENSSHBG00005013487	SMARCA4 (ENSSHBG00005013643)	LDLR (ENSSHBG00005013811)	KHSRP (ENSSHBG00005013849)
Golden eagle	MODERN SPECIES	45	RNASEH2A (ENSACCG00020013188)	HOOK2 (ENSACCG00020013226)	ENSACCG00020013261	GET3 (ENSACCG00020013277)	TRIR (ENSACCG00020013292)	TNPO2 (ENSACCG00020013317)	FBXW9 (ENSACCG00020013374)	DHPS (ENSACCG00020013435)	WDR83 (ENSACCG00020013467)	WDR83OS (ENSACCG00020013491)	MAN2B1 (ENSACCG00020013525)	TRMT1 (ENSACCG00020013570)	NACC1 (ENSACCG00020013602)	YJU2B (ENSACCG00020014191)	MRI1 (ENSACCG00020014216)	NANOS3 (ENSACCG00020014245) ##22	CC2D1A (ENSACCG00020014458)	DCAF15 (ENSACCG00020014746)	RFX1 (ENSACCG00020014811)	ENSACCG00020014866
Cryptodira	ANCESTRAL SPECIES	45	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000164506	ENSGT00940000159313
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000164506	ENSGT00940000159313
Testudinidae	ANCESTRAL SPECIES	41	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000159829	ENSGT00520000055591.a	ENSGT00950000182964.a.a	ENSGT01100000263497.E.b	ENSGT00390000005897.d	ENSGT00390000005897.c	ENSGT00940000164186.a	ENSGT00950000182913.B	ENSGT00950000182976.b.a	ENSGT00940000156262
Goode s thornscrub tortoise	MODERN SPECIES	152	MAN2B1 (ENSGEVG00005018951)	TRMT1 (ENSGEVG00005018931)	NACC1 (ENSGEVG00005018916)	STX10 (ENSGEVG00005018902)	IER2 (ENSGEVG00005018887)	CACNA1A (ENSGEVG00005016785)	ENSGEVG00005016468	ENSGEVG00005016432	ENSGEVG00005016394	ENSGEVG00005016311	ENSGEVG00005016258	YJU2B (ENSGEVG00005016237)	ENSGEVG00005016207	ENSGEVG00005016117	ZSWIM4 (ENSGEVG00005016081)	NANOS3 (ENSGEVG00005016038) ##22	CC2D1A (ENSGEVG00005015986)	ENSGEVG00005015952	PODNL1 (ENSGEVG00005015827)	ENSGEVG00005015785	DCAF15 (ENSGEVG00005015747)	RFX1 (ENSGEVG00005015668)	RLN3 (ENSGEVG00005015644)	ENSGEVG00005015561	ENSGEVG00005015467	CLPP (ENSGEVG00005015438)	ENSGEVG00005015422	ALKBH7 (ENSGEVG00005015413)	PSPN (ENSGEVG00005015375)	GTF2F1 (ENSGEVG00005014890)	ENSGEVG00005014840
Abingdon island giant tortoise	MODERN SPECIES	727				HAO1 (ENSCABG00000004063)	ENSCABG00000004066	ENSCABG00000004071	ENSCABG00000004079	ENSCABG00000004084	ENSCABG00000004094	ENSCABG00000004100	ENSCABG00000004105	YJU2B (ENSCABG00000004109)	MRI1 (ENSCABG00000004149)	ENSCABG00000004150	ZSWIM4 (ENSCABG00000004152)	NANOS3 (ENSCABG00000004162) ##22	CC2D1A (ENSCABG00000004166)	PODNL1 (ENSCABG00000004175)	ENSCABG00000004181	DCAF15 (ENSCABG00000004186)	RFX1 (ENSCABG00000004196)	RLN3 (ENSCABG00000004208)	ENSCABG00000004209	ENSCABG00000004216	CLPP (ENSCABG00000004220)	ALKBH7 (ENSCABG00000004236)	PSPN (ENSCABG00000004239)	GTF2F1 (ENSCABG00000004243)	ENSCABG00000004276	KHSRP (ENSCABG00000004282)	ENSCABG00000004297
Emydidae	ANCESTRAL SPECIES	48	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00990000205655	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000164506	ENSGT00940000159313
painted turtle	MODERN SPECIES	2403	FBXW9 (ENSCPBG00000023887)	ENSCPBG00000023879	DHPS (ENSCPBG00000023877)	ENSCPBG00000023873	WDR83OS (ENSCPBG00000023872)	MAN2B1 (ENSCPBG00000023871)	TRMT1 (ENSCPBG00000023866)	NACC1 (ENSCPBG00000023862)	STX10 (ENSCPBG00000023860)	IER2 (ENSCPBG00000023859)	CACNA1A (ENSCPBG00000023849)	ENSCPBG00000023837	YJU2B (ENSCPBG00000023832)	ENSCPBG00000023829	ZSWIM4 (ENSCPBG00000023828)	NANOS3 (ENSCPBG00000023819) ##22	CC2D1A (ENSCPBG00000023818)	PODNL1 (ENSCPBG00000023814)	DCAF15 (ENSCPBG00000023812)	RFX1 (ENSCPBG00000023811)	RLN3 (ENSCPBG00000023809)	ENSCPBG00000023805	ENSCPBG00000023801
Three-toed box turtle	MODERN SPECIES	382	GET3 (ENSTMTG00000018660)	ENSTMTG00000018682	TNPO2 (ENSTMTG00000018696)	FBXW9 (ENSTMTG00000018762)	ENSTMTG00000018786	WDR83 (ENSTMTG00000018797)	WDR83OS (ENSTMTG00000018813)	MAN2B1 (ENSTMTG00000018824)	TRMT1 (ENSTMTG00000018872)	NACC1 (ENSTMTG00000018902)	CACNA1A (ENSTMTG00000019100)	ENSTMTG00000020857	YJU2B (ENSTMTG00000020864)	MRI1 (ENSTMTG00000020868)	ENSTMTG00000020875	NANOS3 (ENSTMTG00000020886) ##22	CC2D1A (ENSTMTG00000020919)	DCAF15 (ENSTMTG00000021152)	RFX1 (ENSTMTG00000021207)	RLN3 (ENSTMTG00000021380)	ENSTMTG00000021394	ENSTMTG00000021405	ENSTMTG00000021407	ALKBH7 (ENSTMTG00000021414)	PSPN (ENSTMTG00000021420)	GTF2F1 (ENSTMTG00000021428)	ENSTMTG00000021440	KHSRP (ENSTMTG00000021461)	ENSTMTG00000021479	DOCK6 (ENSTMTG00000021579)	ENSTMTG00000022102
Lepidosauria	ANCESTRAL SPECIES	81	ENSGT00940000163721	ENSGT00940000156708.a.a	ENSGT01050000246697	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT00900000141021.b.b.d	ENSGT00940000163101	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.b.a.a.a.b
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000159005.k	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.b.a.a.a.a.b
Laterata	ANCESTRAL SPECIES	7	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00390000005584	ENSGT00960000192617	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.b.a.a.a.a.b
Common wall lizard	MODERN SPECIES	8	RAVER1 (ENSPMRG00000018432)	TYK2 (ENSPMRG00000023918)	CDC37 (ENSPMRG00000023916)	ENSPMRG00000023914	ENSPMRG00000023913	PDE4A (ENSPMRG00000023910)	KEAP1 (ENSPMRG00000023908)	SPC24 (ENSPMRG00000023907)	MAST1 (ENSPMRG00000023904)	ENSPMRG00000023902	ENSPMRG00000023901	ENSPMRG00000023900	YJU2B (ENSPMRG00000023899)	C19orf53 (ENSPMRG00000023898)	ZSWIM4 (ENSPMRG00000023897)	NANOS3 (ENSPMRG00000023896) ##22	CC2D1A (ENSPMRG00000023894)	PODNL1 (ENSPMRG00000023893)	DCAF15 (ENSPMRG00000023890)	RFX1 (ENSPMRG00000023885)	ENSPMRG00000023881	ENSPMRG00000023879	ENSPMRG00000023878	CLPP (ENSPMRG00000023877)	ALKBH7 (ENSPMRG00000023875)	PSPN (ENSPMRG00000023874)	GTF2F1 (ENSPMRG00000023873)	ENSPMRG00000023872	ENSPMRG00000023871	ENSPMRG00000023870	ENSPMRG00000023869
Argentine black and white tegu	MODERN SPECIES	85	RAVER1 (ENSSMRG00000016782)	TYK2 (ENSSMRG00000016791)	CDC37 (ENSSMRG00000016797)	ENSSMRG00000016798	ENSSMRG00000016801	PDE4A (ENSSMRG00000016802)	KEAP1 (ENSSMRG00000016807)	ENSSMRG00000016809	MAST1 (ENSSMRG00000016813)	ENSSMRG00000016824	ENSSMRG00000016825	ENSSMRG00000016826	YJU2B (ENSSMRG00000016828)	C19orf53 (ENSSMRG00000016829)	ZSWIM4 (ENSSMRG00000016830)	NANOS3 (ENSSMRG00000016836) ##22	CC2D1A (ENSSMRG00000016838)	PODNL1 (ENSSMRG00000017021)	ENSSMRG00000017032	DCAF15 (ENSSMRG00000017041)	RFX1 (ENSSMRG00000017045)	RLN3 (ENSSMRG00000017065)	ENSSMRG00000017066	ENSSMRG00000017068	ENSSMRG00000017070	CLPP (ENSSMRG00000017071)	ALKBH7 (ENSSMRG00000017074)	PSPN (ENSSMRG00000017075)	GTF2F1 (ENSSMRG00000017079)	ENSSMRG00000017080	KHSRP (ENSSMRG00000017081)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000159005.l	ENSGT00940000159005.k	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000156051	ENSGT00940000173726
Elapidae	ANCESTRAL SPECIES	21	ENSGT00390000014512	ENSGT00940000159005.l.e	ENSGT00940000159005.l.f	ENSGT00940000159005.k	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869.a	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700.f	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a.k	ENSGT00940000154394.b.a.b
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT00940000159005.l.e	ENSGT00940000159005.l.f.c	ENSGT00940000159005.k	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869.a	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700.f	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a.k	ENSGT00940000154394.b.a.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	23	ENSGT00940000159005.l.e	ENSGT00940000159005.l.f.c	ENSGT00940000159005.k	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869.a	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700.f	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a.k	ENSGT00940000154394.b.a.a.a.b
Mainland tiger snake	MODERN SPECIES	167							PDE4A (ENSNSUG00000012535)	KEAP1 (ENSNSUG00000013264)	ENSNSUG00000013265	MAST1 (ENSNSUG00000013266)	ENSNSUG00000013267	ENSNSUG00000013268	YJU2B (ENSNSUG00000013269)	C19orf53 (ENSNSUG00000013270)	ENSNSUG00000013271	NANOS3 (ENSNSUG00000013277) ##22	CC2D1A (ENSNSUG00000013279)	PODNL1 (ENSNSUG00000013309)	DCAF15 (ENSNSUG00000013311)	RFX1 (ENSNSUG00000013312)	RLN3 (ENSNSUG00000013313)	ENSNSUG00000013319	ENSNSUG00000013321	CLPP (ENSNSUG00000013322)	ALKBH7 (ENSNSUG00000013323)	PSPN (ENSNSUG00000013324)	GTF2F1 (ENSNSUG00000013325)	ENSNSUG00000013327	KHSRP (ENSNSUG00000013328)	SLC25A23 (ENSNSUG00000013332)	CRB3 (ENSNSUG00000013333)
Eastern brown snake	MODERN SPECIES	52	ENSPTXG00000004825	ENSPTXG00000004087	FDX2 (ENSPTXG00000004078)	RAVER1 (ENSPTXG00000004076)	TYK2 (ENSPTXG00000004070)	CDC37 (ENSPTXG00000004068)	PDE4A (ENSPTXG00000004066)	KEAP1 (ENSPTXG00000004065)	SPC24 (ENSPTXG00000004063)	MAST1 (ENSPTXG00000004059)	ENSPTXG00000004057	ENSPTXG00000004054	YJU2B (ENSPTXG00000004050)	C19orf53 (ENSPTXG00000004048)	ZSWIM4 (ENSPTXG00000004034)	NANOS3 (ENSPTXG00000004029) ##22	CC2D1A (ENSPTXG00000004028)	PODNL1 (ENSPTXG00000004027)	DCAF15 (ENSPTXG00000004026)	RFX1 (ENSPTXG00000004025)	RLN3 (ENSPTXG00000003968)	ENSPTXG00000003932	CLPP (ENSPTXG00000003924)	PSPN (ENSPTXG00000006836)	ALKBH7 (ENSPTXG00000006835)	GTF2F1 (ENSPTXG00000006834)	ENSPTXG00000006833	KHSRP (ENSPTXG00000006832)	SLC25A23 (ENSPTXG00000006831)	CRB3 (ENSPTXG00000006829)	ENSPTXG00000006828
tuatara	MODERN SPECIES	124																NANOS3 (ENSSPUG00000009826) ##22	CC2D1A (ENSSPUG00000009691)	VPS51 (ENSSPUG00000009639)	ENSSPUG00000009632	TM7SF2 (ENSSPUG00000009619)	ZNHIT2 (ENSSPUG00000009605)
Mammalia	ANCESTRAL SPECIES	42	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00390000018038	ENSGT00530000064123	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578
Platypus	DUPLICATION
Platypus	MODERN SPECIES	86	ORNANAV1R3013 (ENSOANG00000007354)	ORNANAV1R3012 (ENSOANG00000042081)	ENSOANG00000046629	ORNANAV1R3121 (ENSOANG00000036357)	ORNANAV1R3199 (ENSOANG00000046376)	ENSOANG00000007846	ORNANAV1R3119 (ENSOANG00000048918)	ORNANAV1R3120 (ENSOANG00000047122)	ENSOANG00000050348	ORNANAV1R3117 (ENSOANG00000049501)	ENSOANG00000048029	ENSOANG00000041023	ORNANAV1R3011 (ENSOANG00000050991)	ORNANAV1R3223 (ENSOANG00000039445)	ORNANAV1R3102 (ENSOANG00000002240)	ENSOANG00000004407 ##22	ENSOANG00000039437	ENSOANG00000008350	ORNANAV1R3019 (ENSOANG00000045259)	ENSOANG00000037158	ENSOANG00000002231	ENSOANG00000011079	ENSOANG00000042524	ENSOANG00000050102	ENSOANG00000041198	ENSOANG00000045726	ENSOANG00000004273	ENSOANG00000010630	ORNANAV1R3046 (ENSOANG00000042337)	ENSOANG00000047008	ORNANAV1R3047 (ENSOANG00000044841)
Platypus	MODERN SPECIES	84	ENSOANG00000050304	MICOS13 (ENSOANG00000045348)	ENSOANG00000011554	SAFB (ENSOANG00000002184)	SAFB2 (ENSOANG00000031579)	ENSOANG00000047575	ENSOANG00000044729	KDM4B (ENSOANG00000012762)	UHRF1 (ENSOANG00000005332)	ENSOANG00000045384	PLIN3 (ENSOANG00000047773)	ENSOANG00000045252	FEM1A (ENSOANG00000047437)	DPP9 (ENSOANG00000042103)	ENSOANG00000008999	ENSOANG00000013042 ##22	CC2D1A (ENSOANG00000041135)	PODNL1 (ENSOANG00000003748)	ENSOANG00000009307	ENSOANG00000030077	ENSOANG00000037657	ENSOANG00000011238	VAV1 (ENSOANG00000014870)	GPR108 (ENSOANG00000045248)	ENSOANG00000006101	ENSOANG00000006102	ENSOANG00000006107	ENSOANG00000006581	ENSOANG00000039080	ENSOANG00000051104	ENSOANG00000041505
Theria	ANCESTRAL SPECIES	29	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES		FARSA (ENSSHAG00000015006)	CALR (ENSSHAG00000022448)	RAD23A (ENSSHAG00000014944)	GADD45GIP1 (ENSSHAG00000030763)	ENSSHAG00000031388	NFIX (ENSSHAG00000014449)	ENSSHAG00000030868	TRMT1 (ENSSHAG00000014381)	IER2 (ENSSHAG00000022046)	CACNA1A (ENSSHAG00000013591)	ENSSHAG00000031108	YJU2B (ENSSHAG00000011586)	MRI1 (ENSSHAG00000011531)	C19orf53 (ENSSHAG00000027685)	ZSWIM4 (ENSSHAG00000011275)	ENSSHAG00000026160 ##22	ENSSHAG00000021049	CC2D1A (ENSSHAG00000010380)	PODNL1 (ENSSHAG00000010334)	DCAF15 (ENSSHAG00000010157)	RFX1 (ENSSHAG00000009998)	ENSSHAG00000025486	ENSSHAG00000009701	ENSSHAG00000009514	ENSSHAG00000023995	C19orf67 (ENSSHAG00000027453)	ENSSHAG00000024156	ENSSHAG00000009246	ASF1B (ENSSHAG00000009083)	ADGRL1 (ENSSHAG00000008368)	ADGRE5 (ENSSHAG00000005642)
Tasmanian devil	MODERN SPECIES	2	CCDC80 (ENSSHAG00000005040)	ENSSHAG00000030844	SLC35A5 (ENSSHAG00000027226)	ATG3 (ENSSHAG00000002785)	CD200 (ENSSHAG00000000091)	ENSSHAG00000026007	ENSSHAG00000026755	SLC9C1 (ENSSHAG00000001016)	C3orf52 (ENSSHAG00000024652)	TMPRSS7 (ENSSHAG00000016263)	TAGLN3 (ENSSHAG00000016127)	ABHD10 (ENSSHAG00000015998)	PHLDB2 (ENSSHAG00000015637)	PLCXD2 (ENSSHAG00000014787)	ENSSHAG00000014286	ENSSHAG00000023858 ##22	NECTIN3 (ENSSHAG00000012211)	ENSSHAG00000030916	MORC1 (ENSSHAG00000016735)	GUCA1C (ENSSHAG00000022313)	ENSSHAG00000016507	TRAT1 (ENSSHAG00000022023)	ENSSHAG00000021002	ENSSHAG00000027739	CIP2A (ENSSHAG00000015364)	ENSSHAG00000022158	ENSSHAG00000014283	IFT57 (ENSSHAG00000012976)	CD47 (ENSSHAG00000012318)	BBX (ENSSHAG00000003009)	ENSSHAG00000010123
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT01050000246822	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT01050000246822	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
koala	MODERN SPECIES	58	CALR (ENSPCIG00000019290)	RAD23A (ENSPCIG00000019286)	ENSPCIG00000019285	ENSPCIG00000033702	NFIX (ENSPCIG00000019280)	LYL1 (ENSPCIG00000019276)	TRMT1 (ENSPCIG00000019273)	NACC1 (ENSPCIG00000019270)	IER2 (ENSPCIG00000019269)	CACNA1A (ENSPCIG00000019267)	ENSPCIG00000019264	YJU2B (ENSPCIG00000019033)	MRI1 (ENSPCIG00000019032)	C19orf53 (ENSPCIG00000019031)	ZSWIM4 (ENSPCIG00000019028)	ENSPCIG00000033468 ##22	ENSPCIG00000018374	CC2D1A (ENSPCIG00000029766)	PODNL1 (ENSPCIG00000029767)	DCAF15 (ENSPCIG00000029768)	RFX1 (ENSPCIG00000029769)	RLN3 (ENSPCIG00000005101)	ENSPCIG00000029770	ENSPCIG00000029772	ENSPCIG00000029773	C19orf67 (ENSPCIG00000033975)	ENSPCIG00000029775	ENSPCIG00000029776	ASF1B (ENSPCIG00000029777)	ADGRL1 (ENSPCIG00000029778)
Common wonbat	MODERN SPECIES	580	CALR (ENSVURG00010012640)	RAD23A (ENSVURG00010012654)	GADD45GIP1 (ENSVURG00010012667)	ENSVURG00010012675	NFIX (ENSVURG00010012686)	LYL1 (ENSVURG00010012714)	TRMT1 (ENSVURG00010012721)	NACC1 (ENSVURG00010012733)	ENSVURG00010012740	CACNA1A (ENSVURG00010013847)	ENSVURG00010024168	ENSVURG00010024170	MRI1 (ENSVURG00010024173)	C19orf53 (ENSVURG00010024176)	ZSWIM4 (ENSVURG00010024179)	ENSVURG00010024197 ##22	ENSVURG00010024198	CC2D1A (ENSVURG00010024206)	PODNL1 (ENSVURG00010024211)	DCAF15 (ENSVURG00010024215)	RFX1 (ENSVURG00010024218)	RLN3 (ENSVURG00010024221)	ENSVURG00010024222	ENSVURG00010024226	ENSVURG00010024229	C19orf67 (ENSVURG00010024230)	SAMD1 (ENSVURG00010024236)	ENSVURG00010024240	ASF1B (ENSVURG00010024248)	ADGRL1 (ENSVURG00010024253)	ENSVURG00010024260
Opossum	MODERN SPECIES	2	FARSA (ENSMODG00000011519)	CALR (ENSMODG00000011530)	RAD23A (ENSMODG00000011539)	GADD45GIP1 (ENSMODG00000011545)	NFIX (ENSMODG00000011587)	ENSMODG00000011593	TRMT1 (ENSMODG00000011619)	ENSMODG00000011626	IER2 (ENSMODG00000023954)	CACNA1A (ENSMODG00000011749)	ENSMODG00000011755	YJU2B (ENSMODG00000011863)	MRI1 (ENSMODG00000011870)	C19orf53 (ENSMODG00000011876)	ZSWIM4 (ENSMODG00000011902)	ENSMODG00000023964 ##22	ENSMODG00000050577	CC2D1A (ENSMODG00000011949)	PODNL1 (ENSMODG00000011977)	ENSMODG00000012004	RFX1 (ENSMODG00000012044)	RLN3 (ENSMODG00000038451)	ENSMODG00000012066	ENSMODG00000041791	C19orf67 (ENSMODG00000012075)	SAMD1 (ENSMODG00000011961)	PRKACA (ENSMODG00000012087)	ASF1B (ENSMODG00000012099)	ENSMODG00000048905	ADGRL1 (ENSMODG00000012145)	ADGRE5 (ENSMODG00000002432)
Eutheria	ANCESTRAL SPECIES	27	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a
Atlantogenata	ANCESTRAL SPECIES	41	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912
Afrotheria	ANCESTRAL SPECIES	38	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912
Afrotheria_a	ANCESTRAL SPECIES	39	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912
Elephant	MODERN SPECIES	270	FARSA (ENSLAFG00000016154)	CALR (ENSLAFG00000016157)	RAD23A (ENSLAFG00000029782)	GADD45GIP1 (ENSLAFG00000027811)	DAND5 (ENSLAFG00000002928)	NFIX (ENSLAFG00000017040)	LYL1 (ENSLAFG00000005235)	TRMT1 (ENSLAFG00000014072)	NACC1 (ENSLAFG00000012921)	STX10 (ENSLAFG00000029308)	CACNA1A (ENSLAFG00000021838)	YJU2B (ENSLAFG00000027397)	MRI1 (ENSLAFG00000012910)	C19orf53 (ENSLAFG00000012918)	ZSWIM4 (ENSLAFG00000011614)	NANOS3 (ENSLAFG00000008480) ##22	ENSLAFG00000010734	CC2D1A (ENSLAFG00000010738)	ENSLAFG00000027060	DCAF15 (ENSLAFG00000010147)	RFX1 (ENSLAFG00000010160)	IL27RA (ENSLAFG00000005271)	ENSLAFG00000027272	C19orf67 (ENSLAFG00000021923)	SAMD1 (ENSLAFG00000004736)	PRKACA (ENSLAFG00000004743)	ASF1B (ENSLAFG00000004745)	ADGRL1 (ENSLAFG00000015188)	ADGRE5 (ENSLAFG00000010516)	DDX39A (ENSLAFG00000022777)	PKN1 (ENSLAFG00000022604)
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Suina	ANCESTRAL SPECIES	16	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Pig	MODERN SPECIES	10	CALR (ENSSSCG00000013746)	GADD45GIP1 (ENSSSCG00000034859)	RAD23A (ENSSSCG00000013747)	ENSSSCG00000048273	NFIX (ENSSSCG00000013742)	LYL1 (ENSSSCG00000024549)	TRMT1 (ENSSSCG00000013744)	NACC1 (ENSSSCG00000013751)	STX10 (ENSSSCG00000013752)	IER2 (ENSSSCG00000013753)	CACNA1A (ENSSSCG00000013754)	YJU2B (ENSSSCG00000013755)	MRI1 (ENSSSCG00000013756)	C19orf53 (ENSSSCG00000013757)	ZSWIM4 (ENSSSCG00000013758)	NANOS3 (ENSSSCG00000013759) ##22	ENSSSCG00000013760	CC2D1A (ENSSSCG00000013761)	PODNL1 (ENSSSCG00000013762)	DCAF15 (ENSSSCG00000013763)	RFX1 (ENSSSCG00000013764)	ENSSSCG00000045290	RLN3 (ENSSSCG00000013765)	IL27RA (ENSSSCG00000013766)	PALM3 (ENSSSCG00000013767)	ENSSSCG00000013768	C19orf67 (ENSSSCG00000013769)	ENSSSCG00000033298	PRKACA (ENSSSCG00000013771)	ASF1B (ENSSSCG00000013772)	ADGRL1 (ENSSSCG00000013773)
Chacoan peccary	MODERN SPECIES	769	FARSA (ENSCWAG00000000829)	CALR (ENSCWAG00000000858)	RAD23A (ENSCWAG00000000887)	GADD45GIP1 (ENSCWAG00000000909)	NFIX (ENSCWAG00000000950)	LYL1 (ENSCWAG00000001006)	TRMT1 (ENSCWAG00000001026)	NACC1 (ENSCWAG00000001107)	STX10 (ENSCWAG00000001131)	IER2 (ENSCWAG00000001159)	CACNA1A (ENSCWAG00000001583)	YJU2B (ENSCWAG00000005691)	MRI1 (ENSCWAG00000005715)	C19orf53 (ENSCWAG00000005735)	ZSWIM4 (ENSCWAG00000005771)	NANOS3 (ENSCWAG00000005863) ##22	ENSCWAG00000005882	CC2D1A (ENSCWAG00000005927)	PODNL1 (ENSCWAG00000005980)	DCAF15 (ENSCWAG00000006021)	RFX1 (ENSCWAG00000006056)	RLN3 (ENSCWAG00000006130)	IL27RA (ENSCWAG00000006159)	PALM3 (ENSCWAG00000006223)	MISP3 (ENSCWAG00000006355)	C19orf67 (ENSCWAG00000006377)	ENSCWAG00000006416	PRKACA (ENSCWAG00000006513)	ASF1B (ENSCWAG00000006659)	ADGRL1 (ENSCWAG00000006767)	ADGRE5 (ENSCWAG00000006860)
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Camelidae	ANCESTRAL SPECIES	69	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990
Arabian camel	MODERN SPECIES	14	CALR (ENSCDRG00005022183)	RAD23A (ENSCDRG00005022180)	GADD45GIP1 (ENSCDRG00005022178)	ENSCDRG00005022176	NFIX (ENSCDRG00005022174)	LYL1 (ENSCDRG00005022168)	TRMT1 (ENSCDRG00005022165)	NACC1 (ENSCDRG00005022164)	STX10 (ENSCDRG00005022163)	IER2 (ENSCDRG00005022160)	CACNA1A (ENSCDRG00005018624)	YJU2B (ENSCDRG00005017211)	MRI1 (ENSCDRG00005017143)	C19orf53 (ENSCDRG00005017111)	ZSWIM4 (ENSCDRG00005017026)	NANOS3 (ENSCDRG00005016971) ##22	ENSCDRG00005016955	ENSCDRG00005016926	PODNL1 (ENSCDRG00005016538)	DCAF15 (ENSCDRG00005016473)	RFX1 (ENSCDRG00005016416)	RLN3 (ENSCDRG00005016381)	IL27RA (ENSCDRG00005016180)	PALM3 (ENSCDRG00005016115)	MISP3 (ENSCDRG00005016060)	C19orf67 (ENSCDRG00005016012)	PRKACA (ENSCDRG00005015856)	ASF1B (ENSCDRG00005015788)	ADGRL1 (ENSCDRG00005015480)	ADGRE5 (ENSCDRG00005015305)	DDX39A (ENSCDRG00005015189)
Alpaca	MODERN SPECIES	2507																NANOS3 (ENSVPAG00000011497) ##22
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Pecora	ANCESTRAL SPECIES		ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Percora_a	ANCESTRAL SPECIES		ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Bovidae	ANCESTRAL SPECIES		ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a.e	ENSGT00940000159684
Rambouillet Sheep	MODERN SPECIES	21	CALR (ENSOARG00020009931)	RAD23A (ENSOARG00020009840)	GADD45GIP1 (ENSOARG00020009801)	NFIX (ENSOARG00020008684)	LYL1 (ENSOARG00020008580)	TRMT1 (ENSOARG00020008381)	NACC1 (ENSOARG00020008294)	STX10 (ENSOARG00020008210)	IER2 (ENSOARG00020008180)	ENSOARG00020008152	CACNA1A (ENSOARG00020002091)	YJU2B (ENSOARG00020001677)	MRI1 (ENSOARG00020001665)	C19orf53 (ENSOARG00020001650)	ZSWIM4 (ENSOARG00020001605)	NANOS3 (ENSOARG00020001560) ##22	ENSOARG00020001554	CC2D1A (ENSOARG00020001498)	PODNL1 (ENSOARG00020001475)	DCAF15 (ENSOARG00020001424)	RFX1 (ENSOARG00020001351)	ENSOARG00020001327	IL27RA (ENSOARG00020001311)	PALM3 (ENSOARG00020001298)	MISP3 (ENSOARG00020001288)	C19orf67 (ENSOARG00020001274)	ENSOARG00020001257	PRKACA (ENSOARG00020001194)	ASF1B (ENSOARG00020001159)	ADGRL1 (ENSOARG00020000968)	ADGRE5 (ENSOARG00020000826)
Goat	MODERN SPECIES	26	FARSA (ENSCHIG00000022617)	CALR (ENSCHIG00000023446)	RAD23A (ENSCHIG00000017626)	GADD45GIP1 (ENSCHIG00000017823)	NFIX (ENSCHIG00000022384)	LYL1 (ENSCHIG00000027128)	TRMT1 (ENSCHIG00000013569)	NACC1 (ENSCHIG00000023771)	STX10 (ENSCHIG00000018262)	IER2 (ENSCHIG00000007994)	CACNA1A (ENSCHIG00000016788)	YJU2B (ENSCHIG00000013694)	MRI1 (ENSCHIG00000019343)	C19orf53 (ENSCHIG00000018093)	ZSWIM4 (ENSCHIG00000007749)	NANOS3 (ENSCHIG00000007837) ##22	ENSCHIG00000014143	CC2D1A (ENSCHIG00000018476)	PODNL1 (ENSCHIG00000021297)	DCAF15 (ENSCHIG00000014809)	RFX1 (ENSCHIG00000025598)	RLN3 (ENSCHIG00000003595)	IL27RA (ENSCHIG00000014900)	PALM3 (ENSCHIG00000021116)	MISP3 (ENSCHIG00000009281)	ENSCHIG00000015338	PRKACA (ENSCHIG00000016501)	ENSCHIG00000016998	ADGRL1 (ENSCHIG00000025611)	ADGRE5 (ENSCHIG00000010425)	DDX39A (ENSCHIG00000019059)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Bos	ANCESTRAL SPECIES	3	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Bos_a	ANCESTRAL SPECIES	57	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Domestic yak	MODERN SPECIES	27	CALR (ENSBGRG00000007159)	RAD23A (ENSBGRG00000007230)	GADD45GIP1 (ENSBGRG00000007568)	NFIX (ENSBGRG00000007656)	LYL1 (ENSBGRG00000008585)	TRMT1 (ENSBGRG00000008629)	ENSBGRG00000008808	NACC1 (ENSBGRG00000008843)	STX10 (ENSBGRG00000008914)	IER2 (ENSBGRG00000009223)	CACNA1A (ENSBGRG00000009642)	YJU2B (ENSBGRG00000021535)	MRI1 (ENSBGRG00000021573)	C19orf53 (ENSBGRG00000021611)	ZSWIM4 (ENSBGRG00000021668)	NANOS3 (ENSBGRG00000021964) ##22	ENSBGRG00000021979	CC2D1A (ENSBGRG00000022053)	PODNL1 (ENSBGRG00000022916)	DCAF15 (ENSBGRG00000023126)	RFX1 (ENSBGRG00000023159)	RLN3 (ENSBGRG00000023271)	IL27RA (ENSBGRG00000023291)	PALM3 (ENSBGRG00000023457)	MISP3 (ENSBGRG00000023479)	C19orf67 (ENSBGRG00000023503)	ENSBGRG00000023541	PRKACA (ENSBGRG00000023559)	ASF1B (ENSBGRG00000000398)	ENSBGRG00000000445	ADGRL1 (ENSBGRG00000000453)
Wild yak	MODERN SPECIES	122												YJU2B (ENSBMUG00000000597)	MRI1 (ENSBMUG00000000585)	ENSBMUG00000000557	ZSWIM4 (ENSBMUG00000000467)	NANOS3 (ENSBMUG00000000389) ##22	ENSBMUG00000000366	CC2D1A (ENSBMUG00000000347)	PODNL1 (ENSBMUG00000000274)	DCAF15 (ENSBMUG00000000150)	RFX1 (ENSBMUG00000000093)	RLN3 (ENSBMUG00000018814)	ENSBMUG00000018788	IL27RA (ENSBMUG00000018770)	PALM3 (ENSBMUG00000018718)	MISP3 (ENSBMUG00000018697)	C19orf67 (ENSBMUG00000018686)	ENSBMUG00000018679	PRKACA (ENSBMUG00000018657)	ASF1B (ENSBMUG00000018603)	ADGRL1 (ENSBMUG00000018535)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Hybrid Bos Indicus	MODERN SPECIES	26	FARSA (ENSBIXG00005023164)	CALR (ENSBIXG00005023092)	RAD23A (ENSBIXG00005023035)	GADD45GIP1 (ENSBIXG00005022995)	NACC1 (ENSBIXG00005003906)	LYL1 (ENSBIXG00005003796)	TRMT1 (ENSBIXG00005022272)	STX10 (ENSBIXG00005006889)	IER2 (ENSBIXG00005003732)	CACNA1A (ENSBIXG00005021956)	ENSBIXG00005007354	YJU2B (ENSBIXG00005021066)	MRI1 (ENSBIXG00005021041)	ENSBIXG00005007352	ZSWIM4 (ENSBIXG00005021000)	NANOS3 (ENSBIXG00005020898) ##22	ENSBIXG00005020888	CC2D1A (ENSBIXG00005020848)	PODNL1 (ENSBIXG00005020725)	DCAF15 (ENSBIXG00005003473)	RFX1 (ENSBIXG00005003471)	RLN3 (ENSBIXG00005020471)	IL27RA (ENSBIXG00005020455)	PALM3 (ENSBIXG00005020377)	C19orf67 (ENSBIXG00005007724)	ENSBIXG00005020339	PRKACA (ENSBIXG00005003422)	ASF1B (ENSBIXG00005003397)	ADGRL1 (ENSBIXG00005003365)	ADGRE5 (ENSBIXG00005020089)	DDX39A (ENSBIXG00005020009)
Cow	MODERN SPECIES	26	FARSA (ENSBTAG00000021374)	CALR (ENSBTAG00000015114)	RAD23A (ENSBTAG00000015116)	GADD45GIP1 (ENSBTAG00000015117)	NFIX (ENSBTAG00000018229)	LYL1 (ENSBTAG00000019329)	TRMT1 (ENSBTAG00000019325)	NACC1 (ENSBTAG00000016350)	STX10 (ENSBTAG00000016352)	IER2 (ENSBTAG00000016354)	CACNA1A (ENSBTAG00000014828)	YJU2B (ENSBTAG00000002516)	MRI1 (ENSBTAG00000002524)	C7H19orf53 (ENSBTAG00000002525)	ZSWIM4 (ENSBTAG00000002527)	NANOS3 (ENSBTAG00000000399) ##22	BRME1 (ENSBTAG00000006064)	CC2D1A (ENSBTAG00000006068)	PODNL1 (ENSBTAG00000006073)	DCAF15 (ENSBTAG00000008841)	RFX1 (ENSBTAG00000008854)	RLN3 (ENSBTAG00000038437)	IL27RA (ENSBTAG00000016933)	PALM3 (ENSBTAG00000046744)	MISP3 (ENSBTAG00000016936)	C7H19orf67 (ENSBTAG00000016937)	PRKACA (ENSBTAG00000006642)	ASF1B (ENSBTAG00000004085)	ADGRL1 (ENSBTAG00000003675)	ADGRE5 (ENSBTAG00000021818)	DDX39A (ENSBTAG00000021820)
Siberian musk deer	MODERN SPECIES	34	FARSA (ENSMMSG00000017435)	ENSMMSG00000017464	RAD23A (ENSMMSG00000017530)	GADD45GIP1 (ENSMMSG00000017735)	NFIX (ENSMMSG00000017773)	LYL1 (ENSMMSG00000017977)	TRMT1 (ENSMMSG00000018011)	NACC1 (ENSMMSG00000018197)	STX10 (ENSMMSG00000018243)	IER2 (ENSMMSG00000018376)	CACNA1A (ENSMMSG00000019062)	YJU2B (ENSMMSG00000024343)	MRI1 (ENSMMSG00000024345)	C19orf53 (ENSMMSG00000024346)	ZSWIM4 (ENSMMSG00000024347)	NANOS3 (ENSMMSG00000024352) ##22	ENSMMSG00000024353	CC2D1A (ENSMMSG00000024357)	PODNL1 (ENSMMSG00000024362)	DCAF15 (ENSMMSG00000024364)	RFX1 (ENSMMSG00000024366)	RLN3 (ENSMMSG00000007549)	IL27RA (ENSMMSG00000007566)	PALM3 (ENSMMSG00000007601)	MISP3 (ENSMMSG00000007622)	C19orf67 (ENSMMSG00000007644)	ENSMMSG00000007697	PRKACA (ENSMMSG00000007781)	ASF1B (ENSMMSG00000007873)	ADGRL1 (ENSMMSG00000007939)	ADGRE5 (ENSMMSG00000008090)
Yarkand deer	MODERN SPECIES	32	GCDH (ENSCHYG00000018661)	FARSA (ENSCHYG00000018361)	ENSCHYG00000017855	GADD45GIP1 (ENSCHYG00000017788)	NFIX (ENSCHYG00000016512)	LYL1 (ENSCHYG00000016421)	TRMT1 (ENSCHYG00000016033)	NACC1 (ENSCHYG00000015883)	STX10 (ENSCHYG00000015356)	IER2 (ENSCHYG00000015316)	CACNA1A (ENSCHYG00000009142)	YJU2B (ENSCHYG00000008722)	MRI1 (ENSCHYG00000008660)	C19orf53 (ENSCHYG00000008638)	ZSWIM4 (ENSCHYG00000008457)	NANOS3 (ENSCHYG00000008374) ##22	ENSCHYG00000008348	CC2D1A (ENSCHYG00000008230)	PODNL1 (ENSCHYG00000008102)	DCAF15 (ENSCHYG00000007994)	RFX1 (ENSCHYG00000007922)	RLN3 (ENSCHYG00000007881)	ENSCHYG00000007859	PALM3 (ENSCHYG00000007837)	IL27RA (ENSCHYG00000007720)	MISP3 (ENSCHYG00000007695)	C19orf67 (ENSCHYG00000007667)	ENSCHYG00000007646	PRKACA (ENSCHYG00000007558)	ASF1B (ENSCHYG00000007484)	ADGRL1 (ENSCHYG00000007185)
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Narwhal	MODERN SPECIES	298	ENSMMNG00015004845	RAD23A (ENSMMNG00015004840)	GADD45GIP1 (ENSMMNG00015005584)	ENSMMNG00015005553	NFIX (ENSMMNG00015005457)	LYL1 (ENSMMNG00015005401)	TRMT1 (ENSMMNG00015005352)	NACC1 (ENSMMNG00015005326)	STX10 (ENSMMNG00015005279)	IER2 (ENSMMNG00015005251)	CACNA1A (ENSMMNG00015004782)	YJU2B (ENSMMNG00015004541)	MRI1 (ENSMMNG00015004525)	C19orf53 (ENSMMNG00015004514)	ZSWIM4 (ENSMMNG00015004504)	NANOS3 (ENSMMNG00015004460) ##22	ENSMMNG00015004453	CC2D1A (ENSMMNG00015004418)	PODNL1 (ENSMMNG00015004384)	DCAF15 (ENSMMNG00015004359)	RFX1 (ENSMMNG00015004291)	RLN3 (ENSMMNG00015004256)	IL27RA (ENSMMNG00015004231)	PALM3 (ENSMMNG00015004214)	ENSMMNG00015004199	C19orf67 (ENSMMNG00015004181)	SAMD1 (ENSMMNG00015004164)	PRKACA (ENSMMNG00015004129)	ASF1B (ENSMMNG00015004096)	ENSMMNG00015004077	ADGRL1 (ENSMMNG00015004047)
Beluga whale	MODERN SPECIES	27	FARSA (ENSDLEG00000010737)	CALR (ENSDLEG00000010762)	RAD23A (ENSDLEG00000010781)	GADD45GIP1 (ENSDLEG00000010807)	NFIX (ENSDLEG00000010831)	LYL1 (ENSDLEG00000010935)	TRMT1 (ENSDLEG00000010945)	NACC1 (ENSDLEG00000010956)	STX10 (ENSDLEG00000010977)	IER2 (ENSDLEG00000011026)	CACNA1A (ENSDLEG00000012308)	CCDC130 (ENSDLEG00000021849)	MRI1 (ENSDLEG00000021850)	CUNH19orf53 (ENSDLEG00000021851)	ZSWIM4 (ENSDLEG00000021852)	NANOS3 (ENSDLEG00000021858) ##22	ENSDLEG00000021859	CC2D1A (ENSDLEG00000021860)	PODNL1 (ENSDLEG00000021861)	DCAF15 (ENSDLEG00000021862)	RFX1 (ENSDLEG00000021866)	IL27RA (ENSDLEG00000021870)	PALM3 (ENSDLEG00000021872)	ENSDLEG00000021874	C19orf67 (ENSDLEG00000021875)	SAMD1 (ENSDLEG00000021876)	PRKACA (ENSDLEG00000021881)	ASF1B (ENSDLEG00000021883)	ADGRL1 (ENSDLEG00000021884)	ENSDLEG00000021886	ADGRE5 (ENSDLEG00000021887)
Vaquita	MODERN SPECIES	14	CALR (ENSPSNG00000006361)	RAD23A (ENSPSNG00000006274)	GADD45GIP1 (ENSPSNG00000006226)	ENSPSNG00000006174	NFIX (ENSPSNG00000005985)	LYL1 (ENSPSNG00000005801)	TRMT1 (ENSPSNG00000005699)	NACC1 (ENSPSNG00000005645)	STX10 (ENSPSNG00000005596)	IER2 (ENSPSNG00000005553)	CACNA1A (ENSPSNG00000003893)	YJU2B (ENSPSNG00000003221)	C19orf53 (ENSPSNG00000003199)	MRI1 (ENSPSNG00000003184)	ZSWIM4 (ENSPSNG00000003154)	NANOS3 (ENSPSNG00000003112) ##22	ENSPSNG00000003101	CC2D1A (ENSPSNG00000002978)	PODNL1 (ENSPSNG00000002942)	DCAF15 (ENSPSNG00000002892)	RFX1 (ENSPSNG00000002816)	RLN3 (ENSPSNG00000002774)	IL27RA (ENSPSNG00000002738)	PALM3 (ENSPSNG00000002710)	MISP3 (ENSPSNG00000002687)	C19orf67 (ENSPSNG00000002664)	ENSPSNG00000002646	PRKACA (ENSPSNG00000002590)	ASF1B (ENSPSNG00000002544)	ENSPSNG00000002523	ADGRL1 (ENSPSNG00000002424)
Dolphin	MODERN SPECIES	2456																NANOS3 (ENSTTRG00000008361) ##22	BRME1 (ENSTTRG00000008364)	CC2D1A (ENSTTRG00000008365)	ENSTTRG00000008372	DCAF15 (ENSTTRG00000008374)	RFX1 (ENSTTRG00000008377)
Sperm whale	MODERN SPECIES	11	ENSPCTG00005014021	ENSPCTG00005014073	ENSPCTG00005014150	ENSPCTG00005014212	MAN2B1 (ENSPCTG00005014341)	NFIX (ENSPCTG00005015199)	LYL1 (ENSPCTG00005015333)	TRMT1 (ENSPCTG00005015397)	NACC1 (ENSPCTG00005015809)	STX10 (ENSPCTG00005015864)	IER2 (ENSPCTG00005016181)	CACNA1A (ENSPCTG00005016871)	IL27RA (ENSPCTG00005022303)	PALM3 (ENSPCTG00005022310)	MISP3 (ENSPCTG00005004751)	NANOS3 (ENSPCTG00005004775) ##22	ENSPCTG00005004792	DNAJB1 (ENSPCTG00005004866)	ADGRL1 (ENSPCTG00005004909)	ENSPCTG00005004947	ADGRE3 (ENSPCTG00005005032)	ENSPCTG00005005335	ZNF333 (ENSPCTG00005005365)	ELAVL3 (ENSPCTG00005005438)	RGL3 (ENSPCTG00005005500)	EPOR (ENSPCTG00005005692)	SWSAP1 (ENSPCTG00005005777)	PLPPR2 (ENSPCTG00005005793)	CCDC159 (ENSPCTG00005005854)	TMEM205 (ENSPCTG00005005907)	RAB3D (ENSPCTG00005005930)
Blue whale	MODERN SPECIES	14	FARSA (ENSBMSG00010006124)	ENSBMSG00010006144	RAD23A (ENSBMSG00010006168)	GADD45GIP1 (ENSBMSG00010006182)	NFIX (ENSBMSG00010006215)	LYL1 (ENSBMSG00010006239)	TRMT1 (ENSBMSG00010006254)	NACC1 (ENSBMSG00010006289)	STX10 (ENSBMSG00010006307)	IER2 (ENSBMSG00010006332)	CACNA1A (ENSBMSG00010007066)	YJU2B (ENSBMSG00010011086)	MRI1 (ENSBMSG00010011099)	C19orf53 (ENSBMSG00010011111)	ZSWIM4 (ENSBMSG00010011126)	NANOS3 (ENSBMSG00010011182) ##22	ENSBMSG00010011193	CC2D1A (ENSBMSG00010011212)	PODNL1 (ENSBMSG00010011253)	DCAF15 (ENSBMSG00010011283)	RFX1 (ENSBMSG00010011328)	RLN3 (ENSBMSG00010011363)	IL27RA (ENSBMSG00010011379)	PALM3 (ENSBMSG00010011405)	ENSBMSG00010011429	C19orf67 (ENSBMSG00010011438)	ENSBMSG00010011456	PRKACA (ENSBMSG00010011474)	ASF1B (ENSBMSG00010011510)	ADGRL1 (ENSBMSG00010011541)	ENSBMSG00010011582
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Canidae	ANCESTRAL SPECIES		ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404.b	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a.d	ENSGT00940000159684	ENSGT00520000059915
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404.b	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a.d	ENSGT00520000059915	ENSGT00940000159684
Dog	MODERN SPECIES	12	CALR (ENSCAFG00845015220)	RAD23A (ENSCAFG00845015161)	GADD45GIP1 (ENSCAFG00845015125)	DAND5 (ENSCAFG00845015107)	NFIX (ENSCAFG00845030565)	ENSCAFG00845030516	TRMT1 (ENSCAFG00845030492)	NACC1 (ENSCAFG00845030474)	STX10 (ENSCAFG00845030435)	IER2 (ENSCAFG00845030405)	CACNA1A (ENSCAFG00845028149)	CCDC130 (ENSCAFG00845027226)	MRI1 (ENSCAFG00845027181)	C20H19orf53 (ENSCAFG00845027143)	ZSWIM4 (ENSCAFG00845026936)	NANOS3 (ENSCAFG00845026758) ##22	ENSCAFG00845026724	CC2D1A (ENSCAFG00845026441)	PODNL1 (ENSCAFG00845026152)	DCAF15 (ENSCAFG00845026029)	RFX1 (ENSCAFG00845025462)	RLN3 (ENSCAFG00845025377)	IL27RA (ENSCAFG00845025289)	PALM3 (ENSCAFG00845025220)	MISP3 (ENSCAFG00845025166)	C19orf67 (ENSCAFG00845025095)	ENSCAFG00845025014	PRKACA (ENSCAFG00845024723)	ASF1B (ENSCAFG00845024582)	ENSCAFG00845024540	ADGRL1 (ENSCAFG00845023599)
Dingo	MODERN SPECIES	112	RAD23A (ENSCAFG00020005332)	GADD45GIP1 (ENSCAFG00020005337)	DAND5 (ENSCAFG00020005339)	NFIX (ENSCAFG00020005352)	LYL1 (ENSCAFG00020005371)	TRMT1 (ENSCAFG00020005397)	NACC1 (ENSCAFG00020005901)	ENSCAFG00020005909	ENSCAFG00020005912	IER2 (ENSCAFG00020005915)	CACNA1A (ENSCAFG00020005960)	YJU2B (ENSCAFG00020006657)	MRI1 (ENSCAFG00020006659)	C19orf53 (ENSCAFG00020006664)	ZSWIM4 (ENSCAFG00020006666)	NANOS3 (ENSCAFG00020006694) ##22	ENSCAFG00020006696	CC2D1A (ENSCAFG00020006705)	PODNL1 (ENSCAFG00020006719)	DCAF15 (ENSCAFG00020006741)	RFX1 (ENSCAFG00020006758)	RLN3 (ENSCAFG00020006880)	IL27RA (ENSCAFG00020006884)	PALM3 (ENSCAFG00020006907)	MISP3 (ENSCAFG00020006913)	C19orf67 (ENSCAFG00020006921)	ENSCAFG00020006932	PRKACA (ENSCAFG00020006939)	ENSCAFG00020006946	ADGRL1 (ENSCAFG00020006957)	ENSCAFG00020007285
Red fox	MODERN SPECIES	182	GADD45GIP1 (ENSVVUG00000024166)	DAND5 (ENSVVUG00000024168)	NFIX (ENSVVUG00000024169)	ENSVVUG00000024173	LYL1 (ENSVVUG00000024174)	TRMT1 (ENSVVUG00000024177)	NACC1 (ENSVVUG00000024182)	ENSVVUG00000024185	IER2 (ENSVVUG00000024187)	CACNA1A (ENSVVUG00000024251)	ENSVVUG00000026589	CCDC130 (ENSVVUG00000026733)	MRI1 (ENSVVUG00000026734)	CUNH19orf53 (ENSVVUG00000026738)	ZSWIM4 (ENSVVUG00000026745)	NANOS3 (ENSVVUG00000026757) ##22	CUNH19orf57 (ENSVVUG00000026758)	CC2D1A (ENSVVUG00000026759)	PODNL1 (ENSVVUG00000026761)	DCAF15 (ENSVVUG00000026764)	RFX1 (ENSVVUG00000026765)	RLN3 (ENSVVUG00000026766)	IL27RA (ENSVVUG00000026768)	PALM3 (ENSVVUG00000026777)	CUNH19orf67 (ENSVVUG00000026783)	ENSVVUG00000026786	PRKACA (ENSVVUG00000026789)	ENSVVUG00000026791	ADGRL1 (ENSVVUG00000026800)	ENSVVUG00000026816	ADGRE5 (ENSVVUG00000026826)
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952.b	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Ursidae	ANCESTRAL SPECIES	20	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000164104	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Ursus	ANCESTRAL SPECIES	91	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000164104	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952.b	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915
Polar bear	MODERN SPECIES	464	CALR (ENSUMAG00000006097)	RAD23A (ENSUMAG00000006070)	ENSUMAG00000006067	DAND5 (ENSUMAG00000006065)	NFIX (ENSUMAG00000006053)	LYL1 (ENSUMAG00000006035)	TRMT1 (ENSUMAG00000006027)	ENSUMAG00000006026	ENSUMAG00000006021	ENSUMAG00000006017	CACNA1A (ENSUMAG00000004898)	YJU2B (ENSUMAG00000004756)	MRI1 (ENSUMAG00000004743)	ENSUMAG00000004739	ZSWIM4 (ENSUMAG00000004723)	NANOS3 (ENSUMAG00000004703) ##22	ENSUMAG00000004697	CC2D1A (ENSUMAG00000004689)	DCAF15 (ENSUMAG00000004671)	RFX1 (ENSUMAG00000004593)	RLN3 (ENSUMAG00000004584)	IL27RA (ENSUMAG00000004578)	PALM3 (ENSUMAG00000004555)	C19orf67 (ENSUMAG00000004533)	ENSUMAG00000004525	PRKACA (ENSUMAG00000004434)	ASF1B (ENSUMAG00000004416)	ENSUMAG00000004412	ADGRL1 (ENSUMAG00000004364)	ADGRE5 (ENSUMAG00000004331)	DDX39A (ENSUMAG00000004317)
American black bear	MODERN SPECIES	1007																NANOS3 (ENSUAMG00000006804) ##22	ENSUAMG00000006807	CC2D1A (ENSUAMG00000006829)	PODNL1 (ENSUAMG00000007176)	DCAF15 (ENSUAMG00000007182)	RFX1 (ENSUAMG00000007187)	RLN3 (ENSUAMG00000007195)	IL27RA (ENSUAMG00000007215)	PALM3 (ENSUAMG00000007276)	MISP3 (ENSUAMG00000007282)	C19orf67 (ENSUAMG00000007285)	ENSUAMG00000007288
Giant Panda	MODERN SPECIES	14	ENSAMEG00000012487	RAD23A (ENSAMEG00000012527)	GADD45GIP1 (ENSAMEG00000012565)	DAND5 (ENSAMEG00000012568)	ENSAMEG00000012569	ENSAMEG00000027765	LYL1 (ENSAMEG00000026522)	TRMT1 (ENSAMEG00000012598)	NACC1 (ENSAMEG00000012634)	STX10 (ENSAMEG00000012641)	IER2 (ENSAMEG00000020275)	CACNA1A (ENSAMEG00000012670)	YJU2B (ENSAMEG00000012903)	C19orf53 (ENSAMEG00000012918)	ZSWIM4 (ENSAMEG00000012935)	NANOS3 (ENSAMEG00000012972) ##22	ENSAMEG00000029005	ENSAMEG00000012974	CC2D1A (ENSAMEG00000012975)	PODNL1 (ENSAMEG00000013040)	DCAF15 (ENSAMEG00000013062)	RFX1 (ENSAMEG00000013075)	RLN3 (ENSAMEG00000027838)	IL27RA (ENSAMEG00000013118)	PALM3 (ENSAMEG00000030397)	MISP3 (ENSAMEG00000027357)	C19orf67 (ENSAMEG00000013133)	ENSAMEG00000013143	PRKACA (ENSAMEG00000013145)	ASF1B (ENSAMEG00000026497)	ADGRL1 (ENSAMEG00000013217)
Mustelinae	ANCESTRAL SPECIES	45	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952.b	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Ferret	MODERN SPECIES	185	FARSA (ENSMPUG00000004400)	CALR (ENSMPUG00000004348)	RAD23A (ENSMPUG00000004334)	GADD45GIP1 (ENSMPUG00000004344)	NFIX (ENSMPUG00000004325)	LYL1 (ENSMPUG00000004316)	TRMT1 (ENSMPUG00000004210)	NACC1 (ENSMPUG00000004203)	STX10 (ENSMPUG00000004133)	IER2 (ENSMPUG00000018705)	CACNA1A (ENSMPUG00000003358)	YJU2B (ENSMPUG00000003348)	MRI1 (ENSMPUG00000003316)	C19orf53 (ENSMPUG00000003300)	ZSWIM4 (ENSMPUG00000003286)	NANOS3 (ENSMPUG00000003282) ##22	ENSMPUG00000003271	CC2D1A (ENSMPUG00000003255)	PODNL1 (ENSMPUG00000003251)	RFX1 (ENSMPUG00000003132)	DCAF15 (ENSMPUG00000003126)	RLN3 (ENSMPUG00000003123)	IL27RA (ENSMPUG00000003119)	PALM3 (ENSMPUG00000003113)	MISP3 (ENSMPUG00000003110)	C19orf67 (ENSMPUG00000003089)	ENSMPUG00000003082	PRKACA (ENSMPUG00000003076)	ASF1B (ENSMPUG00000003072)	ADGRL1 (ENSMPUG00000003065)	ADGRE5 (ENSMPUG00000003059)
American mink	MODERN SPECIES	233	CALR (ENSNVIG00000004013)	RAD23A (ENSNVIG00000004028)	ENSNVIG00000004059	DAND5 (ENSNVIG00000004073)	NFIX (ENSNVIG00000004082)	LYL1 (ENSNVIG00000004114)	TRMT1 (ENSNVIG00000004121)	NACC1 (ENSNVIG00000004197)	STX10 (ENSNVIG00000004211)	IER2 (ENSNVIG00000004234)	CACNA1A (ENSNVIG00000004318)	YJU2B (ENSNVIG00000006150)	MRI1 (ENSNVIG00000006189)	C19orf53 (ENSNVIG00000006202)	ZSWIM4 (ENSNVIG00000006210)	NANOS3 (ENSNVIG00000006232) ##22	ENSNVIG00000006245	ENSNVIG00000006254	CC2D1A (ENSNVIG00000006255)	PODNL1 (ENSNVIG00000006307)	DCAF15 (ENSNVIG00000006385)	RFX1 (ENSNVIG00000006441)	RLN3 (ENSNVIG00000006699)	IL27RA (ENSNVIG00000006724)	PALM3 (ENSNVIG00000006881)	MISP3 (ENSNVIG00000006906)	PRKACA (ENSNVIG00000006918)	C19orf67 (ENSNVIG00000006983)	SAMD1 (ENSNVIG00000006996)	ASF1B (ENSNVIG00000007013)	ADGRL1 (ENSNVIG00000007029)
Felidae	ANCESTRAL SPECIES	21	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Panthera	ANCESTRAL SPECIES	15	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Tiger	MODERN SPECIES	580	GCDH (ENSPTIG00000012466)	SYCE2 (ENSPTIG00000011935)	FARSA (ENSPTIG00000011502)	CALR (ENSPTIG00000011152)	RAD23A (ENSPTIG00000010565)	ENSPTIG00000010514	DAND5 (ENSPTIG00000010336)	NFIX (ENSPTIG00000009075)	TRMT1 (ENSPTIG00000008833)	STX10 (ENSPTIG00000008273)	ENSPTIG00000008052	YJU2B (ENSPTIG00000005555)	MRI1 (ENSPTIG00000005216)	C19orf53 (ENSPTIG00000004139)	ZSWIM4 (ENSPTIG00000001122)	NANOS3 (ENSPTIG00000000325) ##22	ENSPTIG00000000031	CC2D1A (ENSPTIG00000021588)	RLN3 (ENSPTIG00000021464)	ENSPTIG00000021368	C19orf67 (ENSPTIG00000021323)	PRKACA (ENSPTIG00000021292)	ASF1B (ENSPTIG00000021042)	ENSPTIG00000020966	ADGRL1 (ENSPTIG00000018453)	ADGRE5 (ENSPTIG00000017854)	DDX39A (ENSPTIG00000017287)	GIPC1 (ENSPTIG00000016866)	DNAJB1 (ENSPTIG00000016803)	ENSPTIG00000016780	CLEC17A (ENSPTIG00000016638)
Panthera_a	ANCESTRAL SPECIES		ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
lion	MODERN SPECIES	2	CALR (ENSPLOG00000015775)	RAD23A (ENSPLOG00000015869)	GADD45GIP1 (ENSPLOG00000015943)	DAND5 (ENSPLOG00000015976)	NFIX (ENSPLOG00000016031)	LYL1 (ENSPLOG00000016418)	TRMT1 (ENSPLOG00000016470)	NACC1 (ENSPLOG00000016708)	STX10 (ENSPLOG00000016759)	IER2 (ENSPLOG00000016822)	CACNA1A (ENSPLOG00000017530)	YJU2B (ENSPLOG00000021795)	MRI1 (ENSPLOG00000021817)	C19orf53 (ENSPLOG00000021831)	ZSWIM4 (ENSPLOG00000021842)	NANOS3 (ENSPLOG00000021885) ##22	ENSPLOG00000021891	CC2D1A (ENSPLOG00000022083)	PODNL1 (ENSPLOG00000022445)	DCAF15 (ENSPLOG00000022465)	RFX1 (ENSPLOG00000022475)	RLN3 (ENSPLOG00000022484)	IL27RA (ENSPLOG00000022499)	PALM3 (ENSPLOG00000022520)	MISP3 (ENSPLOG00000022524)	C19orf67 (ENSPLOG00000022526)	ENSPLOG00000022530	PRKACA (ENSPLOG00000022536)	ASF1B (ENSPLOG00000022545)	ADGRL1 (ENSPLOG00000022557)	ADGRE5 (ENSPLOG00000022577)
leopard	MODERN SPECIES	110	CALR (ENSPPRG00000000511)	RAD23A (ENSPPRG00000002419)	GADD45GIP1 (ENSPPRG00000002575)	DAND5 (ENSPPRG00000002664)	NFIX (ENSPPRG00000007036)	LYL1 (ENSPPRG00000008858)	TRMT1 (ENSPPRG00000012117)	NACC1 (ENSPPRG00000012438)	STX10 (ENSPPRG00000014043)	IER2 (ENSPPRG00000021487)	CACNA1A (ENSPPRG00000002365)	YJU2B (ENSPPRG00000005736)	MRI1 (ENSPPRG00000006539)	C19orf53 (ENSPPRG00000006905)	ZSWIM4 (ENSPPRG00000009270)	NANOS3 (ENSPPRG00000009573) ##22	ENSPPRG00000009886	CC2D1A (ENSPPRG00000010376)	PODNL1 (ENSPPRG00000010654)	DCAF15 (ENSPPRG00000011956)	RFX1 (ENSPPRG00000012284)	RLN3 (ENSPPRG00000012695)	IL27RA (ENSPPRG00000013931)	MISP3 (ENSPPRG00000018582)	C19orf67 (ENSPPRG00000020108)	SAMD1 (ENSPPRG00000021562)	PRKACA (ENSPPRG00000023771)	ASF1B (ENSPPRG00000023372)	ENSPPRG00000023219	ADGRL1 (ENSPPRG00000000803)	ADGRE5 (ENSPPRG00000002663)
Cat	MODERN SPECIES	1	FARSA (ENSFCAG00000023511)	CALR (ENSFCAG00000000479)	RAD23A (ENSFCAG00000023315)	GADD45GIP1 (ENSFCAG00000034587)	DAND5 (ENSFCAG00000043469)	NFIX (ENSFCAG00000000481)	ENSFCAG00000000482	TRMT1 (ENSFCAG00000000483)	NACC1 (ENSFCAG00000025613)	STX10 (ENSFCAG00000000484)	IER2 (ENSFCAG00000000485)	CACNA1A (ENSFCAG00000000486)	MRI1 (ENSFCAG00000011508)	ENSFCAG00000044597	ZSWIM4 (ENSFCAG00000003715)	NANOS3 (ENSFCAG00000003717) ##22	BRME1 (ENSFCAG00000003718)	CC2D1A (ENSFCAG00000003719)	PODNL1 (ENSFCAG00000003720)	DCAF15 (ENSFCAG00000014364)	RFX1 (ENSFCAG00000003721)	RLN3 (ENSFCAG00000027164)	PALM3 (ENSFCAG00000041444)	IL27RA (ENSFCAG00000003723)	MISP3 (ENSFCAG00000040950)	CA2H19orf67 (ENSFCAG00000009466)	ENSFCAG00000026810	PRKACA (ENSFCAG00000025137)	ASF1B (ENSFCAG00000023314)	ADGRL1 (ENSFCAG00000003727)	ENSFCAG00000035484
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Chiroptera	ANCESTRAL SPECIES	60	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Microchiroptera	ANCESTRAL SPECIES	51	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Microbat	MODERN SPECIES	1247											CACNA1A (ENSMLUG00000010292)	ENSMLUG00000029452	YJU2B (ENSMLUG00000004757)	MRI1 (ENSMLUG00000004766)	C19orf53 (ENSMLUG00000004751)	NANOS3 (ENSMLUG00000012971) ##22	BRME1 (ENSMLUG00000025695)	CC2D1A (ENSMLUG00000012974)	PODNL1 (ENSMLUG00000012982)	DCAF15 (ENSMLUG00000012992)	RFX1 (ENSMLUG00000013002)	RLN3 (ENSMLUG00000013013)	IL27RA (ENSMLUG00000013014)	PALM3 (ENSMLUG00000013023)	MISP3 (ENSMLUG00000017771)	C19orf67 (ENSMLUG00000024756)	PRKACA (ENSMLUG00000008255)	ASF1B (ENSMLUG00000000537)	ADGRL1 (ENSMLUG00000000503)	ADGRE5 (ENSMLUG00000009235)	ENSMLUG00000009280
Greater horseshoe bat	MODERN SPECIES	9	RAD23A (ENSRFEG00010021198)	GADD45GIP1 (ENSRFEG00010021188)	DAND5 (ENSRFEG00010021178)	ENSRFEG00010021172	NFIX (ENSRFEG00010021037)	LYL1 (ENSRFEG00010020997)	TRMT1 (ENSRFEG00010020964)	NACC1 (ENSRFEG00010020944)	STX10 (ENSRFEG00010020918)	IER2 (ENSRFEG00010020910)	CACNA1A (ENSRFEG00010012402)	YJU2B (ENSRFEG00010011786)	MRI1 (ENSRFEG00010011758)	C19orf53 (ENSRFEG00010011715)	ZSWIM4 (ENSRFEG00010011662)	NANOS3 (ENSRFEG00010011622) ##22	ENSRFEG00010011572	CC2D1A (ENSRFEG00010010723)	PODNL1 (ENSRFEG00010010558)	DCAF15 (ENSRFEG00010010497)	RFX1 (ENSRFEG00010010442)	RLN3 (ENSRFEG00010010382)	IL27RA (ENSRFEG00010010284)	PALM3 (ENSRFEG00010010244)	MISP3 (ENSRFEG00010010210)	C19orf67 (ENSRFEG00010010158)	ENSRFEG00010009981	PRKACA (ENSRFEG00010009863)	ASF1B (ENSRFEG00010009782)	ADGRL1 (ENSRFEG00010009604)	ADGRE5 (ENSRFEG00010009510)
Megabat	MODERN SPECIES	544															ZSWIM4 (ENSPVAG00000017533)	NANOS3 (ENSPVAG00000017538) ##22	ENSPVAG00000017540	CC2D1A (ENSPVAG00000017544)	PODNL1 (ENSPVAG00000017547)	DCAF15 (ENSPVAG00000017548)	RFX1 (ENSPVAG00000017549)	RLN3 (ENSPVAG00000017551)	IL27RA (ENSPVAG00000017552)	ENSPVAG00000017553	MISP3 (ENSPVAG00000017554)	C19orf67 (ENSPVAG00000017555)	PRKACA (ENSPVAG00000017556)	ASF1B (ENSPVAG00000017558)	ADGRL1 (ENSPVAG00000017560)
Equus	ANCESTRAL SPECIES	55	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Donkey	MODERN SPECIES	12	RAD23A (ENSEASG00005004081)	GADD45GIP1 (ENSEASG00005035955)	DAND5 (ENSEASG00005004075)	ENSEASG00005028746	NFIX (ENSEASG00005004061)	LYL1 (ENSEASG00005024646)	TRMT1 (ENSEASG00005004050)	NACC1 (ENSEASG00005004040)	ENSEASG00005004032	IER2 (ENSEASG00005034811)	CACNA1A (ENSEASG00005000422)	YJU2B (ENSEASG00005000166)	MRI1 (ENSEASG00005000151)	C19orf53 (ENSEASG00005025989)	ZSWIM4 (ENSEASG00005015317)	NANOS3 (ENSEASG00005015313) ##22	ENSEASG00005032947	CC2D1A (ENSEASG00005015309)	PODNL1 (ENSEASG00005015307)	DCAF15 (ENSEASG00005015306)	RFX1 (ENSEASG00005015303)	RLN3 (ENSEASG00005038338)	IL27RA (ENSEASG00005015299)	PALM3 (ENSEASG00005015298)	MISP3 (ENSEASG00005015296)	C19orf67 (ENSEASG00005015293)	ENSEASG00005015288	PRKACA (ENSEASG00005015286)	ASF1B (ENSEASG00005015285)	ENSEASG00005015284	ADGRL1 (ENSEASG00005015282)
Horse	MODERN SPECIES	28	CALR (ENSECAG00000008164)	RAD23A (ENSECAG00000024607)	DAND5 (ENSECAG00000024508)	GADD45GIP1 (ENSECAG00000003766)	ENSECAG00000031092	NFIX (ENSECAG00000019690)	LYL1 (ENSECAG00000028699)	TRMT1 (ENSECAG00000016149)	NACC1 (ENSECAG00000015051)	STX10 (ENSECAG00000013775)	IER2 (ENSECAG00000041395)	CACNA1A (ENSECAG00000016371)	YJU2B (ENSECAG00000012731)	C7H19orf53 (ENSECAG00000010593)	ZSWIM4 (ENSECAG00000006600)	NANOS3 (ENSECAG00000016293) ##22	BRME1 (ENSECAG00000029150)	CC2D1A (ENSECAG00000014906)	PODNL1 (ENSECAG00000016452)	DCAF15 (ENSECAG00000016571)	RFX1 (ENSECAG00000016589)	IL27RA (ENSECAG00000011964)	MISP3 (ENSECAG00000035018)	PALM3 (ENSECAG00000030644)	C7H19orf67 (ENSECAG00000008641)	ENSECAG00000026959	PRKACA (ENSECAG00000016874)	ASF1B (ENSECAG00000015967)	ADGRL1 (ENSECAG00000021555)	ENSECAG00000054299	ENSECAG00000029649
Eulipotyphla	ANCESTRAL SPECIES	747																ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059
Hedgehog	MODERN SPECIES	9573																NANOS3 (ENSEEUG00000009900) ##22
Common shrew	MODERN SPECIES	6225																NANOS3 (ENSSARG00000008966) ##22	ENSSARG00000008971	CC2D1A (ENSSARG00000009042)	ENSSARG00000009107
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Primates	ANCESTRAL SPECIES	18	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Greater bamboo lemur	MODERN SPECIES	1098	RAD23A (ENSPSMG00000004675)	GADD45GIP1 (ENSPSMG00000004634)	DAND5 (ENSPSMG00000004632)	NFIX (ENSPSMG00000004616)	LYL1 (ENSPSMG00000004557)	TRMT1 (ENSPSMG00000004538)	NACC1 (ENSPSMG00000004448)	STX10 (ENSPSMG00000004413)	IER2 (ENSPSMG00000004370)	CACNA1A (ENSPSMG00000002497)	ENSPSMG00000001179	YJU2B (ENSPSMG00000001159)	MRI1 (ENSPSMG00000001122)	C19orf53 (ENSPSMG00000001107)	ZSWIM4 (ENSPSMG00000001098)	NANOS3 (ENSPSMG00000001065) ##22	BRME1 (ENSPSMG00000001047)	CC2D1A (ENSPSMG00000000896)	PODNL1 (ENSPSMG00000000734)	DCAF15 (ENSPSMG00000000694)	RFX1 (ENSPSMG00000000677)	RLN3 (ENSPSMG00000000667)	IL27RA (ENSPSMG00000000656)	PALM3 (ENSPSMG00000000637)	MISP3 (ENSPSMG00000000627)	C19orf67 (ENSPSMG00000000620)	ENSPSMG00000000615	PRKACA (ENSPSMG00000000531)	ASF1B (ENSPSMG00000000448)	ENSPSMG00000000417	ADGRL1 (ENSPSMG00000000369)
Coquerels sifaka	MODERN SPECIES	226	CALR (ENSPCOG00000027189)	RAD23A (ENSPCOG00000023819)	GADD45GIP1 (ENSPCOG00000008740)	DAND5 (ENSPCOG00000014620)	NFIX (ENSPCOG00000015718)	LYL1 (ENSPCOG00000027352)	TRMT1 (ENSPCOG00000008653)	NACC1 (ENSPCOG00000028443)	STX10 (ENSPCOG00000027677)	CACNA1A (ENSPCOG00000017466)	ENSPCOG00000024786	YJU2B (ENSPCOG00000014499)	MRI1 (ENSPCOG00000021500)	C19orf53 (ENSPCOG00000014098)	ZSWIM4 (ENSPCOG00000024403)	NANOS3 (ENSPCOG00000018814) ##22	BRME1 (ENSPCOG00000010238)	CC2D1A (ENSPCOG00000016820)	PODNL1 (ENSPCOG00000007369)	DCAF15 (ENSPCOG00000016926)	RFX1 (ENSPCOG00000021114)	RLN3 (ENSPCOG00000022698)	IL27RA (ENSPCOG00000022860)	PALM3 (ENSPCOG00000024665)	MISP3 (ENSPCOG00000015918)	C19orf67 (ENSPCOG00000023801)	SAMD1 (ENSPCOG00000016370)	PRKACA (ENSPCOG00000027066)	ASF1B (ENSPCOG00000001102)	ADGRL1 (ENSPCOG00000025675)	ADGRE5 (ENSPCOG00000020208)
Mouse lemur	MODERN SPECIES	16	RPL18A (ENSMICG00000029204)	JAK3 (ENSMICG00000034333)	ENSMICG00000045535	B3GNT3 (ENSMICG00000031110)	FCHO1 (ENSMICG00000028462)	MAP1S (ENSMICG00000041940)	UNC13A (ENSMICG00000036952)	COLGALT1 (ENSMICG00000037557)	NIBAN3 (ENSMICG00000045861)	PGLS (ENSMICG00000037868)	SLC27A1 (ENSMICG00000003391)	MVB12A (ENSMICG00000043858)	CCDC194 (ENSMICG00000045403)	ENSMICG00000033146	ZSWIM4 (ENSMICG00000037649)	NANOS3 (ENSMICG00000030950) ##22	BRME1 (ENSMICG00000013478)	CC2D1A (ENSMICG00000013491)	PODNL1 (ENSMICG00000027429)	DCAF15 (ENSMICG00000012026)	RFX1 (ENSMICG00000012036)	RLN3 (ENSMICG00000035223)	IL27RA (ENSMICG00000003469)	MISP3 (ENSMICG00000046673)	C19orf67 (ENSMICG00000008731)	SAMD1 (ENSMICG00000030168)	PRKACA (ENSMICG00000036023)	ASF1B (ENSMICG00000000574)	ADGRL1 (ENSMICG00000027529)	ENSMICG00000032629	ENSMICG00000046227
Bushbaby	MODERN SPECIES	242	RAD23A (ENSOGAG00000007693)	GADD45GIP1 (ENSOGAG00000028560)	DAND5 (ENSOGAG00000026803)	NFIX (ENSOGAG00000017133)	LYL1 (ENSOGAG00000033339)	TRMT1 (ENSOGAG00000025576)	NACC1 (ENSOGAG00000031864)	STX10 (ENSOGAG00000025310)	IER2 (ENSOGAG00000032686)	CACNA1A (ENSOGAG00000001691)	ENSOGAG00000033117	YJU2B (ENSOGAG00000001102)	MRI1 (ENSOGAG00000007183)	C19orf53 (ENSOGAG00000007185)	ZSWIM4 (ENSOGAG00000007186)	NANOS3 (ENSOGAG00000007190) ##22	BRME1 (ENSOGAG00000027547)	CC2D1A (ENSOGAG00000007192)	PODNL1 (ENSOGAG00000007200)	DCAF15 (ENSOGAG00000026882)	RFX1 (ENSOGAG00000007203)	RLN3 (ENSOGAG00000002457)	IL27RA (ENSOGAG00000002458)	PALM3 (ENSOGAG00000031926)	MISP3 (ENSOGAG00000002460)	C19orf67 (ENSOGAG00000002463)	SAMD1 (ENSOGAG00000032909)	PRKACA (ENSOGAG00000011842)	ASF1B (ENSOGAG00000005034)	ADGRL1 (ENSOGAG00000005032)	ADGRE5 (ENSOGAG00000010273)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Tarsier	MODERN SPECIES	2634																NANOS3 (ENSTSYG00000026709) ##22	BRME1 (ENSTSYG00000029159)
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.o.a.a.a	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Black snub-nosed monkey	MODERN SPECIES	1520											ENSRBIG00000035577	YJU2B (ENSRBIG00000041995)	MRI1 (ENSRBIG00000028556)	ENSRBIG00000007721	ZSWIM4 (ENSRBIG00000037112)	NANOS3 (ENSRBIG00000037377) ##22	ENSRBIG00000034812	CC2D1A (ENSRBIG00000016734)	PODNL1 (ENSRBIG00000042216)	DCAF15 (ENSRBIG00000036812)	RFX1 (ENSRBIG00000039951)	RLN3 (ENSRBIG00000022931)	IL27RA (ENSRBIG00000030882)	PALM3 (ENSRBIG00000035709)	MISP3 (ENSRBIG00000029000)	C19orf67 (ENSRBIG00000036921)	SAMD1 (ENSRBIG00000014470)	PRKACA (ENSRBIG00000030568)	ASF1B (ENSRBIG00000031074)	ADGRL1 (ENSRBIG00000043709)	ADGRE5 (ENSRBIG00000027106)
Golden snub-nosed monkey	MODERN SPECIES	975	RAD23A (ENSRROG00000040220)	GADD45GIP1 (ENSRROG00000032590)	DAND5 (ENSRROG00000032903)	NFIX (ENSRROG00000033828)	LYL1 (ENSRROG00000030934)	TRMT1 (ENSRROG00000028599)	NACC1 (ENSRROG00000040733)	STX10 (ENSRROG00000040598)	IER2 (ENSRROG00000024202)	CACNA1A (ENSRROG00000037736)	ENSRROG00000044068	YJU2B (ENSRROG00000039770)	MRI1 (ENSRROG00000031188)	ENSRROG00000032872	ZSWIM4 (ENSRROG00000032947)	NANOS3 (ENSRROG00000032642) ##22	BRME1 (ENSRROG00000024917)	CC2D1A (ENSRROG00000043482)	PODNL1 (ENSRROG00000036501)	DCAF15 (ENSRROG00000033775)	RFX1 (ENSRROG00000038209)	RLN3 (ENSRROG00000032423)	IL27RA (ENSRROG00000036450)	PALM3 (ENSRROG00000032410)	ENSRROG00000021104	C19orf67 (ENSRROG00000045746)	SAMD1 (ENSRROG00000043288)	PRKACA (ENSRROG00000030096)	ASF1B (ENSRROG00000032473)	ADGRL1 (ENSRROG00000041016)	ADGRE5 (ENSRROG00000036165)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Macaca	ANCESTRAL SPECIES	21	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT01100000263539.b.a.a.a.a.a.a.a.a.a.a.a.a	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Crab-eating macaque	MODERN SPECIES	10	GADD45GIP1 (ENSMFAG00000048260)	DAND5 (ENSMFAG00000033697)	NFIX (ENSMFAG00000038849)	LYL1 (ENSMFAG00000032986)	TRMT1 (ENSMFAG00000033143)	ENSMFAG00000047628	NACC1 (ENSMFAG00000036952)	STX10 (ENSMFAG00000039740)	CACNA1A (ENSMFAG00000040043)	ENSMFAG00000053174	ENSMFAG00000064308	ENSMFAG00000055985	YJU2B (ENSMFAG00000038616)	MRI1 (ENSMFAG00000044250)	ZSWIM4 (ENSMFAG00000041230)	NANOS3 (ENSMFAG00000040009) ##22	BRME1 (ENSMFAG00000036981)	CC2D1A (ENSMFAG00000043969)	RLN3 (ENSMFAG00000000848)	IL27RA (ENSMFAG00000038013)	MISP3 (ENSMFAG00000030676)	C19orf67 (ENSMFAG00000042255)	ENSMFAG00000001195	PRKACA (ENSMFAG00000004590)	ASF1B (ENSMFAG00000044347)	ADGRE5 (ENSMFAG00000000614)	DDX39A (ENSMFAG00000044174)	PKN1 (ENSMFAG00000003990)	ENSMFAG00000059444	GIPC1 (ENSMFAG00000042501)	DNAJB1 (ENSMFAG00000042314)
Rhesus	MODERN SPECIES	10	CALR (ENSMMUG00000004392)	RAD23A (ENSMMUG00000004393)	GADD45GIP1 (ENSMMUG00000042251)	DAND5 (ENSMMUG00000063314)	NFIX (ENSMMUG00000019292)	LYL1 (ENSMMUG00000001166)	TRMT1 (ENSMMUG00000001167)	NACC1 (ENSMMUG00000017971)	STX10 (ENSMMUG00000011427)	CACNA1A (ENSMMUG00000003555)	ENSMMUG00000054395	ENSMMUG00000053476	ENSMMUG00000063226	MRI1 (ENSMMUG00000018068)	ZSWIM4 (ENSMMUG00000017645)	NANOS3 (ENSMMUG00000049716) ##22	ENSMMUG00000049316	BRME1 (ENSMMUG00000008317)	CC2D1A (ENSMMUG00000008320)	PODNL1 (ENSMMUG00000008324)	DCAF15 (ENSMMUG00000008326)	RFX1 (ENSMMUG00000018966)	RLN3 (ENSMMUG00000060189)	IL27RA (ENSMMUG00000013538)	PALM3 (ENSMMUG00000013539)	ENSMMUG00000061407	MISP3 (ENSMMUG00000059667)	C19H19orf67 (ENSMMUG00000045865)	ENSMMUG00000058960	PRKACA (ENSMMUG00000014132)	ASF1B (ENSMMUG00000014135)
Pig-tailed macaque	MODERN SPECIES	76	RAD23A (ENSMNEG00000042153)	GADD45GIP1 (ENSMNEG00000033121)	DAND5 (ENSMNEG00000040891)	NFIX (ENSMNEG00000032823)	LYL1 (ENSMNEG00000013370)	TRMT1 (ENSMNEG00000037867)	NACC1 (ENSMNEG00000001897)	STX10 (ENSMNEG00000039402)	IER2 (ENSMNEG00000005809)	CACNA1A (ENSMNEG00000045532)	ENSMNEG00000032415	YJU2B (ENSMNEG00000032777)	MRI1 (ENSMNEG00000002628)	C19orf53 (ENSMNEG00000030499)	ZSWIM4 (ENSMNEG00000040630)	NANOS3 (ENSMNEG00000028898) ##22	BRME1 (ENSMNEG00000042593)	CC2D1A (ENSMNEG00000044902)	PODNL1 (ENSMNEG00000029074)	DCAF15 (ENSMNEG00000031487)	RFX1 (ENSMNEG00000038388)	RLN3 (ENSMNEG00000008264)	IL27RA (ENSMNEG00000044658)	PALM3 (ENSMNEG00000039886)	MISP3 (ENSMNEG00000043349)	C19orf67 (ENSMNEG00000035055)	SAMD1 (ENSMNEG00000014090)	PRKACA (ENSMNEG00000043476)	ASF1B (ENSMNEG00000028854)	ENSMNEG00000030430	ADGRL1 (ENSMNEG00000012530)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Olive baboon	MODERN SPECIES	12	RAD23A (ENSPANG00000014671)	GADD45GIP1 (ENSPANG00000009045)	NFIX (ENSPANG00000018992)	LYL1 (ENSPANG00000014670)	TRMT1 (ENSPANG00000009247)	NACC1 (ENSPANG00000004447)	STX10 (ENSPANG00000012122)	IER2 (ENSPANG00000014006)	CACNA1A (ENSPANG00000009077)	ENSPANG00000044374	YJU2B (ENSPANG00000009961)	MRI1 (ENSPANG00000010977)	C19orf53 (ENSPANG00000038691)	ZSWIM4 (ENSPANG00000018289)	ENSPANG00000048009	NANOS3 (ENSPANG00000015037) ##22	BRME1 (ENSPANG00000017976)	CC2D1A (ENSPANG00000019934)	PODNL1 (ENSPANG00000017712)	DCAF15 (ENSPANG00000011700)	RFX1 (ENSPANG00000009789)	ENSPANG00000005369	IL27RA (ENSPANG00000015627)	PALM3 (ENSPANG00000005117)	MISP3 (ENSPANG00000001631)	C19orf67 (ENSPANG00000019962)	ENSPANG00000014189	PRKACA (ENSPANG00000018288)	ASF1B (ENSPANG00000031048)	ADGRL1 (ENSPANG00000007386)	PKN1 (ENSPANG00000004240)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Sooty mangabey	MODERN SPECIES	347	RAD23A (ENSCATG00000004423)	GADD45GIP1 (ENSCATG00000030476)	DAND5 (ENSCATG00000043902)	NFIX (ENSCATG00000043066)	LYL1 (ENSCATG00000044487)	TRMT1 (ENSCATG00000039850)	NACC1 (ENSCATG00000035045)	STX10 (ENSCATG00000030837)	IER2 (ENSCATG00000021750)	CACNA1A (ENSCATG00000031790)	ENSCATG00000029680	YJU2B (ENSCATG00000031922)	MRI1 (ENSCATG00000029747)	C19orf53 (ENSCATG00000035863)	ZSWIM4 (ENSCATG00000024862)	NANOS3 (ENSCATG00000034885) ##22	BRME1 (ENSCATG00000029619)	CC2D1A (ENSCATG00000040032)	PODNL1 (ENSCATG00000025145)	DCAF15 (ENSCATG00000041636)	RFX1 (ENSCATG00000041901)	RLN3 (ENSCATG00000040582)	IL27RA (ENSCATG00000041637)	PALM3 (ENSCATG00000044550)	MISP3 (ENSCATG00000044272)	C19orf67 (ENSCATG00000044669)	SAMD1 (ENSCATG00000044018)	PRKACA (ENSCATG00000044336)	ASF1B (ENSCATG00000044100)	ADGRL1 (ENSCATG00000042135)	ADGRE5 (ENSCATG00000039127)
Drill	MODERN SPECIES	833												YJU2B (ENSMLEG00000014204)	MRI1 (ENSMLEG00000035138)	C19orf53 (ENSMLEG00000043893)	ZSWIM4 (ENSMLEG00000030165)	NANOS3 (ENSMLEG00000033135) ##22	BRME1 (ENSMLEG00000018878)	CC2D1A (ENSMLEG00000038654)	PODNL1 (ENSMLEG00000040267)	DCAF15 (ENSMLEG00000043946)	RFX1 (ENSMLEG00000030212)	RLN3 (ENSMLEG00000043479)	PALM3 (ENSMLEG00000031068)	ENSMLEG00000032173	C19orf67 (ENSMLEG00000042564)	SAMD1 (ENSMLEG00000032102)	PRKACA (ENSMLEG00000034529)	ASF1B (ENSMLEG00000037143)	ENSMLEG00000039513	ADGRL1 (ENSMLEG00000040752)	ADGRE5 (ENSMLEG00000014705)
Vervet Monkey	MODERN SPECIES	25	CALR (ENSCSAG00000006527)	RAD23A (ENSCSAG00000006523)	GADD45GIP1 (ENSCSAG00000006518)	DAND5 (ENSCSAG00000006514)	NFIX (ENSCSAG00000006510)	LYL1 (ENSCSAG00000006504)	TRMT1 (ENSCSAG00000006500)	NACC1 (ENSCSAG00000006493)	STX10 (ENSCSAG00000006490)	IER2 (ENSCSAG00000018839)	CACNA1A (ENSCSAG00000006482)	YJU2B (ENSCSAG00000006473)	MRI1 (ENSCSAG00000006463)	C19orf53 (ENSCSAG00000006444)	ZSWIM4 (ENSCSAG00000006437)	NANOS3 (ENSCSAG00000006428) ##22	BRME1 (ENSCSAG00000006425)	CC2D1A (ENSCSAG00000006407)	PODNL1 (ENSCSAG00000006396)	DCAF15 (ENSCSAG00000006394)	RLN3 (ENSCSAG00000006390)	IL27RA (ENSCSAG00000006388)	PALM3 (ENSCSAG00000006381)	MISP3 (ENSCSAG00000006375)	C19orf67 (ENSCSAG00000006372)	PRKACA (ENSCSAG00000006367)	SAMD1 (ENSCSAG00000006358)	ASF1B (ENSCSAG00000006355)	ADGRL1 (ENSCSAG00000006349)	ADGRE5 (ENSCSAG00000006346)	DDX39A (ENSCSAG00000006342)
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Hominidae	ANCESTRAL SPECIES		ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Gorilla	MODERN SPECIES	10	RAD23A (ENSGGOG00000023403)	GADD45GIP1 (ENSGGOG00000022807)	DAND5 (ENSGGOG00000009692)	NFIX (ENSGGOG00000001831)	LYL1 (ENSGGOG00000023512)	TRMT1 (ENSGGOG00000014007)	NACC1 (ENSGGOG00000022388)	STX10 (ENSGGOG00000009480)	IER2 (ENSGGOG00000043951)	ENSGGOG00000008660	ENSGGOG00000042836	YJU2B (ENSGGOG00000006623)	MRI1 (ENSGGOG00000006628)	C19orf53 (ENSGGOG00000027024)	ENSGGOG00000011452	NANOS3 (ENSGGOG00000000964) ##22	BRME1 (ENSGGOG00000000965)	CC2D1A (ENSGGOG00000004396)	PODNL1 (ENSGGOG00000004407)	DCAF15 (ENSGGOG00000000384)	RFX1 (ENSGGOG00000000385)	RLN3 (ENSGGOG00000042442)	IL27RA (ENSGGOG00000011506)	PALM3 (ENSGGOG00000023236)	ENSGGOG00000002337	C19orf67 (ENSGGOG00000002339)	PRKACA (ENSGGOG00000013294)	ASF1B (ENSGGOG00000013302)	ADGRL1 (ENSGGOG00000015214)	ADGRE5 (ENSGGOG00000005405)	DDX39A (ENSGGOG00000005414)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Pan	ANCESTRAL SPECIES	14	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Bonobo	MODERN SPECIES	10	CALR (ENSPPAG00000006666)	RAD23A (ENSPPAG00000016916)	GADD45GIP1 (ENSPPAG00000039356)	NFIX (ENSPPAG00000027719)	LYL1 (ENSPPAG00000028076)	ENSPPAG00000031484	NACC1 (ENSPPAG00000033614)	STX10 (ENSPPAG00000042146)	IER2 (ENSPPAG00000008761)	CACNA1A (ENSPPAG00000017516)	ENSPPAG00000033516	YJU2B (ENSPPAG00000028983)	MRI1 (ENSPPAG00000033346)	C19orf53 (ENSPPAG00000039375)	ZSWIM4 (ENSPPAG00000025698)	NANOS3 (ENSPPAG00000032168) ##22	BRME1 (ENSPPAG00000041052)	ENSPPAG00000013237	PODNL1 (ENSPPAG00000017952)	DCAF15 (ENSPPAG00000042487)	RFX1 (ENSPPAG00000029817)	RLN3 (ENSPPAG00000022669)	IL27RA (ENSPPAG00000037229)	PALM3 (ENSPPAG00000039534)	ENSPPAG00000021210	C19orf67 (ENSPPAG00000038468)	ENSPPAG00000029269	PRKACA (ENSPPAG00000014020)	ASF1B (ENSPPAG00000024377)	ADGRL1 (ENSPPAG00000024209)	ADGRE5 (ENSPPAG00000043912)
Chimpanzee	MODERN SPECIES	10	RAD23A (ENSPTRG00000010552)	GADD45GIP1 (ENSPTRG00000010553)	DAND5 (ENSPTRG00000010554)	NFIX (ENSPTRG00000010555)	LYL1 (ENSPTRG00000049311)	TRMT1 (ENSPTRG00000010557)	NACC1 (ENSPTRG00000010558)	STX10 (ENSPTRG00000010559)	IER2 (ENSPTRG00000049474)	CACNA1A (ENSPTRG00000010561)	ENSPTRG00000047800	YJU2B (ENSPTRG00000010562)	MRI1 (ENSPTRG00000010563)	C19H19orf53 (ENSPTRG00000010565)	ZSWIM4 (ENSPTRG00000010567)	NANOS3 (ENSPTRG00000010568) ##22	BRME1 (ENSPTRG00000010569)	CC2D1A (ENSPTRG00000010571)	PODNL1 (ENSPTRG00000010572)	DCAF15 (ENSPTRG00000010573)	RFX1 (ENSPTRG00000010574)	RLN3 (ENSPTRG00000010576)	IL27RA (ENSPTRG00000010578)	PALM3 (ENSPTRG00000010579)	ENSPTRG00000010581	C19H19orf67 (ENSPTRG00000010582)	SAMD1 (ENSPTRG00000010583)	PRKACA (ENSPTRG00000010585)	ASF1B (ENSPTRG00000010586)	ADGRL1 (ENSPTRG00000010588)	ENSPTRG00000050521
Human	MODERN SPECIES	10	CALR (ENSG00000179218)	RAD23A (ENSG00000179262)	GADD45GIP1 (ENSG00000179271)	DAND5 (ENSG00000179284)	NFIX (ENSG00000008441)	LYL1 (ENSG00000104903)	TRMT1 (ENSG00000104907)	NACC1 (ENSG00000160877)	STX10 (ENSG00000104915)	IER2 (ENSG00000160888)	CACNA1A (ENSG00000141837)	YJU2B (ENSG00000104957)	MRI1 (ENSG00000037757)	C19orf53 (ENSG00000104979)	ZSWIM4 (ENSG00000132003)	NANOS3 (ENSG00000187556) ##22	BRME1 (ENSG00000132016)	CC2D1A (ENSG00000132024)	PODNL1 (ENSG00000132000)	DCAF15 (ENSG00000132017)	RFX1 (ENSG00000132005)	RLN3 (ENSG00000171136)	IL27RA (ENSG00000104998)	PALM3 (ENSG00000187867)	MISP3 (ENSG00000141854)	C19orf67 (ENSG00000188032)	SAMD1 (ENSG00000141858)	PRKACA (ENSG00000072062)	SMIM46 (ENSG00000289762)	ASF1B (ENSG00000105011)	ADGRL1 (ENSG00000072071)
Orangutan	MODERN SPECIES	10	CALR (ENSPPYG00000009616)	RAD23A (ENSPPYG00000009617)	GADD45GIP1 (ENSPPYG00000038376)	DAND5 (ENSPPYG00000009619)	ENSPPYG00000009620	LYL1 (ENSPPYG00000009621)	TRMT1 (ENSPPYG00000009622)	NACC1 (ENSPPYG00000009623)	STX10 (ENSPPYG00000009624)	IER2 (ENSPPYG00000009625)	CACNA1A (ENSPPYG00000009626)	YJU2B (ENSPPYG00000010569)	MRI1 (ENSPPYG00000010570)	C19H19orf53 (ENSPPYG00000010571)	ZSWIM4 (ENSPPYG00000039708)	NANOS3 (ENSPPYG00000009627) ##22	BRME1 (ENSPPYG00000009628)	CC2D1A (ENSPPYG00000009629)	PODNL1 (ENSPPYG00000030919)	DCAF15 (ENSPPYG00000009630)	RFX1 (ENSPPYG00000009631)	ENSPPYG00000009632	IL27RA (ENSPPYG00000009633)	PALM3 (ENSPPYG00000009634)	ENSPPYG00000009635	C19orf67 (ENSPPYG00000009636)	ENSPPYG00000009637	PRKACA (ENSPPYG00000009638)	ENSPPYG00000009639	ENSPPYG00000009640	ENSPPYG00000009641
Gibbon	MODERN SPECIES		RAD23A (ENSNLEG00000012969)	GADD45GIP1 (ENSNLEG00000012973)	DAND5 (ENSNLEG00000012978)	NFIX (ENSNLEG00000012980)	LYL1 (ENSNLEG00000013010)	ENSNLEG00000013019	ENSNLEG00000028188	STX10 (ENSNLEG00000013030)	IER2 (ENSNLEG00000028353)	CACNA1A (ENSNLEG00000013041)	ENSNLEG00000035060	ENSNLEG00000013132	MRI1 (ENSNLEG00000013138)	C19orf53 (ENSNLEG00000013141)	ENSNLEG00000034372	NANOS3 (ENSNLEG00000034574) ##22	BRME1 (ENSNLEG00000013152)	CC2D1A (ENSNLEG00000013167)	PODNL1 (ENSNLEG00000013191)	DCAF15 (ENSNLEG00000013221)	RFX1 (ENSNLEG00000013294)	IL27RA (ENSNLEG00000013354)	PALM3 (ENSNLEG00000013390)	ENSNLEG00000013397	C19orf67 (ENSNLEG00000013407)	ENSNLEG00000013417	ASF1B (ENSNLEG00000036282)	ADGRL1 (ENSNLEG00000033463)	ADGRE5 (ENSNLEG00000013491)	DDX39A (ENSNLEG00000013515)	PTGER1 (ENSNLEG00000013538)
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Cebidae	ANCESTRAL SPECIES	20	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a.c.a	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Marmoset	MODERN SPECIES	14	CALR (ENSCJAG00000004650)	ENSCJAG00000004494	GADD45GIP1 (ENSCJAG00000004645)	DAND5 (ENSCJAG00000004639)	NFIX (ENSCJAG00000004603)	LYL1 (ENSCJAG00000004598)	TRMT1 (ENSCJAG00000004566)	NACC1 (ENSCJAG00000043018)	STX10 (ENSCJAG00000004519)	IER2 (ENSCJAG00000045878)	CACNA1A (ENSCJAG00000004458)	YJU2B (ENSCJAG00000004443)	MRI1 (ENSCJAG00000044187)	ENSCJAG00000083863	ZSWIM4 (ENSCJAG00000004397)	NANOS3 (ENSCJAG00000004388) ##22	ENSCJAG00000004372	CC2D1A (ENSCJAG00000004333)	PODNL1 (ENSCJAG00000004297)	DCAF15 (ENSCJAG00000005014)	RFX1 (ENSCJAG00000004970)	RLN3 (ENSCJAG00000004965)	IL27RA (ENSCJAG00000004940)	PALM3 (ENSCJAG00000004935)	MISP3 (ENSCJAG00000004926)	C19orf67 (ENSCJAG00000004924)	SAMD1 (ENSCJAG00000035248)	PRKACA (ENSCJAG00000004906)	ASF1B (ENSCJAG00000004898)	ADGRL1 (ENSCJAG00000004850)	ADGRE5 (ENSCJAG00000054003)
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a.c.a	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578
Bolivian squirrel monkey	MODERN SPECIES	192	CALR (ENSSBOG00000019002)	RAD23A (ENSSBOG00000023231)	GADD45GIP1 (ENSSBOG00000022567)	DAND5 (ENSSBOG00000027807)	NFIX (ENSSBOG00000036002)	LYL1 (ENSSBOG00000035321)	TRMT1 (ENSSBOG00000028861)	NACC1 (ENSSBOG00000029763)	STX10 (ENSSBOG00000028486)	CACNA1A (ENSSBOG00000024258)	ENSSBOG00000028928	YJU2B (ENSSBOG00000022718)	ENSSBOG00000034840	C19orf53 (ENSSBOG00000024373)	ZSWIM4 (ENSSBOG00000010394)	NANOS3 (ENSSBOG00000020970) ##22	BRME1 (ENSSBOG00000005665)	CC2D1A (ENSSBOG00000030926)	PODNL1 (ENSSBOG00000016931)	DCAF15 (ENSSBOG00000028396)	RFX1 (ENSSBOG00000022420)	RLN3 (ENSSBOG00000034704)	IL27RA (ENSSBOG00000034131)	PALM3 (ENSSBOG00000029866)	ENSSBOG00000032680	ENSSBOG00000031891	ENSSBOG00000029114	PRKACA (ENSSBOG00000028189)	ASF1B (ENSSBOG00000023101)	ADGRL1 (ENSSBOG00000032464)	ADGRE5 (ENSSBOG00000000810)
Capuchin	MODERN SPECIES	234	CALR (ENSCCAG00000000456)	RAD23A (ENSCCAG00000030313)	GADD45GIP1 (ENSCCAG00000036734)	DAND5 (ENSCCAG00000018636)	NFIX (ENSCCAG00000022096)	LYL1 (ENSCCAG00000036697)	TRMT1 (ENSCCAG00000022263)	NACC1 (ENSCCAG00000033562)	STX10 (ENSCCAG00000035795)	CACNA1A (ENSCCAG00000025667)	ENSCCAG00000005128	YJU2B (ENSCCAG00000022524)	MRI1 (ENSCCAG00000014292)	ENSCCAG00000036550	ZSWIM4 (ENSCCAG00000014810)	NANOS3 (ENSCCAG00000036253) ##22	BRME1 (ENSCCAG00000033537)	CC2D1A (ENSCCAG00000028774)	PODNL1 (ENSCCAG00000034546)	ENSCCAG00000020314	RFX1 (ENSCCAG00000037933)	RLN3 (ENSCCAG00000034851)	IL27RA (ENSCCAG00000025599)	PALM3 (ENSCCAG00000030648)	MISP3 (ENSCCAG00000021278)	C19orf67 (ENSCCAG00000036582)	SAMD1 (ENSCCAG00000036021)	PRKACA (ENSCCAG00000034581)	ASF1B (ENSCCAG00000013180)	ADGRL1 (ENSCCAG00000032871)	ADGRE5 (ENSCCAG00000037285)
Mas night monkey	MODERN SPECIES	251										CACNA1A (ENSANAG00000024174)	ENSANAG00000030087	YJU2B (ENSANAG00000001642)	ENSANAG00000020896	ENSANAG00000033248	ZSWIM4 (ENSANAG00000032728)	NANOS3 (ENSANAG00000025042) ##22	BRME1 (ENSANAG00000034942)	CC2D1A (ENSANAG00000024276)	PODNL1 (ENSANAG00000033018)	DCAF15 (ENSANAG00000026170)	RFX1 (ENSANAG00000022687)	RLN3 (ENSANAG00000028354)	IL27RA (ENSANAG00000028857)	ENSANAG00000027531	ENSANAG00000028790	C19orf67 (ENSANAG00000021995)	SAMD1 (ENSANAG00000036958)	PRKACA (ENSANAG00000024197)	ASF1B (ENSANAG00000034025)	ADGRL1 (ENSANAG00000034947)	ADGRE5 (ENSANAG00000033446)
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Tree shrew	MODERN SPECIES	4729																NANOS3 (ENSTBEG00000013729) ##22	ENSTBEG00000013761	CC2D1A (ENSTBEG00000013877)	ENSTBEG00000014504	ENSTBEG00000014646
Glires	ANCESTRAL SPECIES	21	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Lagomorpha	ANCESTRAL SPECIES	386														ENSGT00390000013732	ENSGT00390000011740	ENSGT00950000183135.A.b ##22	ENSGT00390000016855
Rabbit	MODERN SPECIES	1214														MRI1 (ENSOCUG00000024840)	C19orf53 (ENSOCUG00000030611)	NANOS3 (ENSOCUG00000014802) ##22
Pika	MODERN SPECIES	4192																ENSOPRG00000007211 ##22	ENSOPRG00000007215	ENSOPRG00000007237
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Rodentia_B	ANCESTRAL SPECIES	43	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Myomorpha	ANCESTRAL SPECIES	52	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Muroidea	ANCESTRAL SPECIES	60	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Cricetinae	ANCESTRAL SPECIES	40	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Golden Hamster	MODERN SPECIES	893													Ccdc130 (ENSMAUG00000020315)	Mri1 (ENSMAUG00000003451)	Zswim4 (ENSMAUG00000021623)	Nanos3 (ENSMAUG00000008396) ##22	Brme1 (ENSMAUG00000021597)	Cc2d1a (ENSMAUG00000003818)	Podnl1 (ENSMAUG00000010711)	Dcaf15 (ENSMAUG00000010865)	Rfx1 (ENSMAUG00000018885)	Rln3 (ENSMAUG00000016189)	Il27ra (ENSMAUG00000004460)	Palm3 (ENSMAUG00000020501)	Misp3 (ENSMAUG00000015004)	1700067K01Rik (ENSMAUG00000017815)	ENSMAUG00000011537	Prkaca (ENSMAUG00000004842)	Asf1b (ENSMAUG00000020077)	Adgrl1 (ENSMAUG00000000445)	Adgre5 (ENSMAUG00000018404)
Chinese hamster chok1gshd	MODERN SPECIES	347	Farsa (ENSCGRG00001019769)	Calr (ENSCGRG00001020181)	Rad23a (ENSCGRG00001020853)	Gadd45gip1 (ENSCGRG00001000298)	Dand5 (ENSCGRG00001000588)	Nfix (ENSCGRG00001013186)	Lyl1 (ENSCGRG00001020161)	Trmt1 (ENSCGRG00001022594)	Nacc1 (ENSCGRG00001016498)	Ier2 (ENSCGRG00001015864)	Cacna1a (ENSCGRG00001015728)	Ccdc130 (ENSCGRG00001021573)	MRI1 (ENSCGRG00001015655)	D8Ertd738e (ENSCGRG00001019898)	Zswim4 (ENSCGRG00001022171)	Nanos3 (ENSCGRG00001023851) ##22	Brme1 (ENSCGRG00001007024)	Cc2d1a (ENSCGRG00001014304)	Podnl1 (ENSCGRG00001020503)	Dcaf15 (ENSCGRG00001023898)	Rfx1 (ENSCGRG00001011068)	Rln3 (ENSCGRG00001018325)	Il27ra (ENSCGRG00001019895)	Palm3 (ENSCGRG00001015020)	Misp3 (ENSCGRG00001015443)	1700067K01Rik (ENSCGRG00001015825)	Samd1 (ENSCGRG00001016469)	PRKACA (ENSCGRG00001017184)	Asf1b (ENSCGRG00001018098)	Adgrl1 (ENSCGRG00001022080)	ENSCGRG00001000091
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684
Northern American deer mouse	MODERN SPECIES	18	Gadd45gip1 (ENSPEMG00000011904)	Dand5 (ENSPEMG00000017061)	Nfix (ENSPEMG00000011765)	ENSPEMG00000029305	Lyl1 (ENSPEMG00000026641)	Trmt1 (ENSPEMG00000016247)	Nacc1 (ENSPEMG00000003314)	ENSPEMG00000028317	Ier2 (ENSPEMG00000005842)	ENSPEMG00000030103	ENSPEMG00000031086	Ccdc130 (ENSPEMG00000013906)	Mri1 (ENSPEMG00000006105)	D8Ertd738e (ENSPEMG00000027807)	Zswim4 (ENSPEMG00000009048)	Nanos3 (ENSPEMG00000030151) ##22	Brme1 (ENSPEMG00000000718)	Podnl1 (ENSPEMG00000018883)	Dcaf15 (ENSPEMG00000012514)	Rfx1 (ENSPEMG00000014245)	Rln3 (ENSPEMG00000005926)	Il27ra (ENSPEMG00000011917)	Palm3 (ENSPEMG00000000570)	Misp3 (ENSPEMG00000017574)	1700067K01Rik (ENSPEMG00000008680)	ENSPEMG00000017586	Prkaca (ENSPEMG00000002089)	Asf1b (ENSPEMG00000026306)	Adgrl1 (ENSPEMG00000008075)	ENSPEMG00000028964	Adgre5 (ENSPEMG00000012912)
Prairie vole	MODERN SPECIES	173				ENSMOCG00000000206	Nfix (ENSMOCG00000002641)	Lyl1 (ENSMOCG00000000199)	Trmt1 (ENSMOCG00000015895)	ENSMOCG00000018653	Ier2 (ENSMOCG00000001243)	Cacna1a (ENSMOCG00000014432)	ENSMOCG00000010484	ENSMOCG00000009861	Mri1 (ENSMOCG00000009591)	D8Ertd738e (ENSMOCG00000000560)	Zswim4 (ENSMOCG00000013310)	Nanos3 (ENSMOCG00000000059) ##22	Brme1 (ENSMOCG00000019462)	Cc2d1a (ENSMOCG00000009561)	Podnl1 (ENSMOCG00000019920)	ENSMOCG00000019700	Dcaf15 (ENSMOCG00000017126)	Rfx1 (ENSMOCG00000009461)	Rln3 (ENSMOCG00000011994)	Il27ra (ENSMOCG00000015066)	Palm3 (ENSMOCG00000019944)	Misp3 (ENSMOCG00000012756)	1700067K01Rik (ENSMOCG00000012915)	ENSMOCG00000000409	Prkaca (ENSMOCG00000009319)	Asf1b (ENSMOCG00000019691)	ENSMOCG00000016743
Murinae	ANCESTRAL SPECIES	15	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Mus	ANCESTRAL SPECIES	6	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186
Mus_A	ANCESTRAL SPECIES	8	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186.c
Mus_B	ANCESTRAL SPECIES	6	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186.c
Mus_C	ANCESTRAL SPECIES	5	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186.c	ENSGT00390000004692.d.a
Steppe mouse	MODERN SPECIES	2936											Cacna1a (ENSMSIG00000013335)	Ccdc130 (ENSMSIG00000013278)	Mri1 (ENSMSIG00000013255)	D8Ertd738e (ENSMSIG00000013244)	Zswim4 (ENSMSIG00000013176)	Nanos3 (ENSMSIG00000013144) ##22	Brme1 (ENSMSIG00000013081)	Cc2d1a (ENSMSIG00000013019)	Podnl1 (ENSMSIG00000012995)	Dcaf15 (ENSMSIG00000012945)	Rfx1 (ENSMSIG00000012789)	ENSMSIG00000012780	Rln3 (ENSMSIG00000012772)	Il27ra (ENSMSIG00000012734)	Palm3 (ENSMSIG00000012709)	ENSMSIG00000012685	1700067K01Rik (ENSMSIG00000012658)	ENSMSIG00000012646	Prkaca (ENSMSIG00000012589)	Asf1b (ENSMSIG00000012561)	Adgrl1 (ENSMSIG00000012147)
spretus	MODERN SPECIES	17	Calr (MGP_SPRETEiJ_G0032429)	Rad23a (MGP_SPRETEiJ_G0032428)	Gadd45gip1 (MGP_SPRETEiJ_G0032427)	Dand5 (MGP_SPRETEiJ_G0032426)	MGP_SPRETEiJ_G0032425	Lyl1 (MGP_SPRETEiJ_G0032424)	Nfix (MGP_SPRETEiJ_G0032423)	Trmt1 (MGP_SPRETEiJ_G0032422)	MGP_SPRETEiJ_G0032421	Ier2 (MGP_SPRETEiJ_G0032420)	Cacna1a (MGP_SPRETEiJ_G0032419)	Ccdc130 (MGP_SPRETEiJ_G0032418)	Mri1 (MGP_SPRETEiJ_G0032417)	D8Ertd738e (MGP_SPRETEiJ_G0032416)	Zswim4 (MGP_SPRETEiJ_G0032415)	Nanos3 (MGP_SPRETEiJ_G0032414) ##22	Brme1 (MGP_SPRETEiJ_G0032413)	Cc2d1a (MGP_SPRETEiJ_G0032412)	Podnl1 (MGP_SPRETEiJ_G0032411)	Dcaf15 (MGP_SPRETEiJ_G0032410)	Rfx1 (MGP_SPRETEiJ_G0032409)	MGP_SPRETEiJ_G0032408	Gm10643 (MGP_SPRETEiJ_G0032407)	Rln3 (MGP_SPRETEiJ_G0032406)	Il27ra (MGP_SPRETEiJ_G0032405)	Palm3 (MGP_SPRETEiJ_G0032404)	Misp3 (MGP_SPRETEiJ_G0032403)	1700067K01Rik (MGP_SPRETEiJ_G0032402)	Prkaca (MGP_SPRETEiJ_G0032401)	Asf1b (MGP_SPRETEiJ_G0032400)	MGP_SPRETEiJ_G0032399
Mouse	MODERN SPECIES	17	Farsa (ENSMUSG00000003808)	Calr (ENSMUSG00000003814)	Rad23a (ENSMUSG00000003813)	Gadd45gip1 (ENSMUSG00000033751)	Dand5 (ENSMUSG00000053226)	Lyl1 (ENSMUSG00000034041)	Nfix (ENSMUSG00000001911)	Trmt1 (ENSMUSG00000001909)	Nacc1 (ENSMUSG00000001910)	Ier2 (ENSMUSG00000053560)	Cacna1a (ENSMUSG00000034656)	Ccdc130 (ENSMUSG00000004994)	Mri1 (ENSMUSG00000004996)	D8Ertd738e (ENSMUSG00000019362)	Zswim4 (ENSMUSG00000035671)	Nanos3 (ENSMUSG00000056155) ##22	Brme1 (ENSMUSG00000008129)	Cc2d1a (ENSMUSG00000036686)	Podnl1 (ENSMUSG00000012889)	Dcaf15 (ENSMUSG00000037103)	Rfx1 (ENSMUSG00000031706)	Gm10643 (ENSMUSG00000074215)	Rln3 (ENSMUSG00000045232)	Il27ra (ENSMUSG00000005465)	Palm3 (ENSMUSG00000047986)	Misp3 (ENSMUSG00000074217)	1700067K01Rik (ENSMUSG00000046408)	Samd1 (ENSMUSG00000079003)	SMIM46 (ENSMUSG00000121579)	Prkaca (ENSMUSG00000005469)	Asf1b (ENSMUSG00000005470)
Ryukyu mouse	MODERN SPECIES	17	Calr (MGP_CAROLIEiJ_G0031311)	Rad23a (MGP_CAROLIEiJ_G0031310)	Gadd45gip1 (MGP_CAROLIEiJ_G0031309)	Dand5 (MGP_CAROLIEiJ_G0031308)	MGP_CAROLIEiJ_G0031307	Lyl1 (MGP_CAROLIEiJ_G0031306)	Nfix (MGP_CAROLIEiJ_G0031305)	Trmt1 (MGP_CAROLIEiJ_G0031304)	Nacc1 (MGP_CAROLIEiJ_G0031303)	Ier2 (MGP_CAROLIEiJ_G0031302)	Cacna1a (MGP_CAROLIEiJ_G0031301)	MGP_CAROLIEiJ_G0031300	Mri1 (MGP_CAROLIEiJ_G0031299)	D8Ertd738e (MGP_CAROLIEiJ_G0031298)	Zswim4 (MGP_CAROLIEiJ_G0031297)	Nanos3 (MGP_CAROLIEiJ_G0031296) ##22	Brme1 (MGP_CAROLIEiJ_G0031295)	Cc2d1a (MGP_CAROLIEiJ_G0031294)	Podnl1 (MGP_CAROLIEiJ_G0031293)	Dcaf15 (MGP_CAROLIEiJ_G0031292)	Rfx1 (MGP_CAROLIEiJ_G0031291)	MGP_CAROLIEiJ_G0031290	MGP_CAROLIEiJ_G0031289	Rln3 (MGP_CAROLIEiJ_G0031288)	Il27ra (MGP_CAROLIEiJ_G0031287)	Palm3 (MGP_CAROLIEiJ_G0031286)	Misp3 (MGP_CAROLIEiJ_G0031285)	1700067K01Rik (MGP_CAROLIEiJ_G0031284)	MGP_CAROLIEiJ_G0031283	Prkaca (MGP_CAROLIEiJ_G0031282)	Asf1b (MGP_CAROLIEiJ_G0031281)
Shrew mouse	MODERN SPECIES	12	Syce2 (MGP_PahariEiJ_G0022918)	Farsa (MGP_PahariEiJ_G0022917)	Calr (MGP_PahariEiJ_G0022916)	Rad23a (MGP_PahariEiJ_G0022915)	Gadd45gip1 (MGP_PahariEiJ_G0022914)	Dand5 (MGP_PahariEiJ_G0022913)	Nfix (MGP_PahariEiJ_G0022912)	Lyl1 (MGP_PahariEiJ_G0022911)	Nacc1 (MGP_PahariEiJ_G0022909)	Ier2 (MGP_PahariEiJ_G0022908)	Cacna1a (MGP_PahariEiJ_G0022907)	Ccdc130 (MGP_PahariEiJ_G0022906)	Mri1 (MGP_PahariEiJ_G0022905)	D8Ertd738e (MGP_PahariEiJ_G0022904)	Zswim4 (MGP_PahariEiJ_G0022903)	Nanos3 (MGP_PahariEiJ_G0022902) ##22	Brme1 (MGP_PahariEiJ_G0022901)	Cc2d1a (MGP_PahariEiJ_G0022900)	Podnl1 (MGP_PahariEiJ_G0022899)	Dcaf15 (MGP_PahariEiJ_G0022898)	Rfx1 (MGP_PahariEiJ_G0022897)	MGP_PahariEiJ_G0022896	MGP_PahariEiJ_G0022895	Rln3 (MGP_PahariEiJ_G0022894)	Il27ra (MGP_PahariEiJ_G0022893)	Palm3 (MGP_PahariEiJ_G0022892)	Misp3 (MGP_PahariEiJ_G0022891)	1700067K01Rik (MGP_PahariEiJ_G0022890)	MGP_PahariEiJ_G0022889	Prkaca (MGP_PahariEiJ_G0022888)	Asf1b (MGP_PahariEiJ_G0022887)
Rat	MODERN SPECIES	10	Gcdh (ENSRNOG00000003307)	Farsa (ENSRNOG00000003149)	Calr (ENSRNOG00000003029)	Rad23a (ENSRNOG00000003026)	Gadd45gip1 (ENSRNOG00000003011)	Dand5 (ENSRNOG00000033368)	Nfix (ENSRNOG00000002983)	Lyl1 (ENSRNOG00000002950)	Trmt1 (ENSRNOG00000002914)	Nacc1 (ENSRNOG00000002864)	Ier2 (ENSRNOG00000067274)	Cacna1a (ENSRNOG00000052707)	Yju2b (ENSRNOG00000008319)	Mri1 (ENSRNOG00000026211)	LOC288913 (ENSRNOG00000049931)	Nanos3 (ENSRNOG00000031593) ##22	Brme1 (ENSRNOG00000025796)	Cc2d1a (ENSRNOG00000006747)	Podnl1 (ENSRNOG00000006741)	Dcaf15 (ENSRNOG00000006551)	Rfx1 (ENSRNOG00000006049)	Rln3 (ENSRNOG00000005911)	Il27ra (ENSRNOG00000005747)	Il27ra (ENSRNOG00000005729)	Misp3 (ENSRNOG00000005619)	LOC686013 (ENSRNOG00000005533)	Samd1 (ENSRNOG00000065861)	Prkaca (ENSRNOG00000005257)	Asf1b (ENSRNOG00000005115)	Adgrl1 (ENSRNOG00000029134)	AABR07043167.1 (ENSRNOG00000039252)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1738	Syce2 (ENSNGAG00000023150)	Farsa (ENSNGAG00000018353)	Calr (ENSNGAG00000011286)	Rad23a (ENSNGAG00000022186)	Gadd45gip1 (ENSNGAG00000022030)	Dand5 (ENSNGAG00000021187)	Nfix (ENSNGAG00000016724)	Lyl1 (ENSNGAG00000014673)	Trmt1 (ENSNGAG00000022486)	Nacc1 (ENSNGAG00000021982)	Cacna1a (ENSNGAG00000000916)	ENSNGAG00000011971	Mri1 (ENSNGAG00000022102)	D8Ertd738e (ENSNGAG00000016091)	Zswim4 (ENSNGAG00000001121)	Nanos3 (ENSNGAG00000020486) ##22	ENSNGAG00000007857	Cc2d1a (ENSNGAG00000020333)	Podnl1 (ENSNGAG00000000890)	Dcaf15 (ENSNGAG00000009961)	Rfx1 (ENSNGAG00000015296)	Rln3 (ENSNGAG00000014225)	Il27ra (ENSNGAG00000012078)	Palm3 (ENSNGAG00000000694)	Misp3 (ENSNGAG00000007990)	1700067K01Rik (ENSNGAG00000022697)	Samd1 (ENSNGAG00000014280)	Prkaca (ENSNGAG00000004941)	Asf1b (ENSNGAG00000019502)	ENSNGAG00000021731	Adgrl1 (ENSNGAG00000013398)
Lesser Egyptian jerboa	MODERN SPECIES	234	Syce2 (ENSJJAG00000021380)	Calr (ENSJJAG00000000115)	Rad23a (ENSJJAG00000000606)	Dand5 (ENSJJAG00000011222)	Nfix (ENSJJAG00000012047)	Lyl1 (ENSJJAG00000015977)	Trmt1 (ENSJJAG00000017154)	Nacc1 (ENSJJAG00000000199)	ENSJJAG00000012119	Ier2 (ENSJJAG00000015305)	Cacna1a (ENSJJAG00000020086)	ENSJJAG00000015193	Mri1 (ENSJJAG00000018104)	D8Ertd738e (ENSJJAG00000019133)	Zswim4 (ENSJJAG00000019795)	Nanos3 (ENSJJAG00000000545) ##22	Cc2d1a (ENSJJAG00000011117)	Podnl1 (ENSJJAG00000019479)	Dcaf15 (ENSJJAG00000020594)	Rfx1 (ENSJJAG00000007901)	Rln3 (ENSJJAG00000016021)	Il27ra (ENSJJAG00000016724)	ENSJJAG00000019152	Misp3 (ENSJJAG00000019250)	1700067K01Rik (ENSJJAG00000019559)	Prkaca (ENSJJAG00000021581)	Asf1b (ENSJJAG00000022179)	Adgrl1 (ENSJJAG00000010567)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Hystricomorpha	ANCESTRAL SPECIES	55	ENSGT00950000182915.b.b.a.a.k.b	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000043005	CALR (ENSHGLG00000009088)	RAD23A (ENSHGLG00000044031)	ENSHGLG00000005609	DAND5 (ENSHGLG00000040694)	ENSHGLG00000045273	NFIX (ENSHGLG00000010071)	LYL1 (ENSHGLG00000046929)	NACC1 (ENSHGLG00000008369)	ENSHGLG00000050447	IER2 (ENSHGLG00000050933)	YJU2B (ENSHGLG00000008180)	MRI1 (ENSHGLG00000010969)	C19orf53 (ENSHGLG00000035084)	ZSWIM4 (ENSHGLG00000019264)	NANOS3 (ENSHGLG00000019378) ##22	ENSHGLG00000003199	PODNL1 (ENSHGLG00000008104)	DCAF15 (ENSHGLG00000010729)	RFX1 (ENSHGLG00000013500)	RLN3 (ENSHGLG00000006860)	IL27RA (ENSHGLG00000008513)	ENSHGLG00000038000	MISP3 (ENSHGLG00000004102)	C19orf67 (ENSHGLG00000004595)	ENSHGLG00000041868	ENSHGLG00000007137	ENSHGLG00000009203	ADGRL1 (ENSHGLG00000011314)	ENSHGLG00000042784	DDX39A (ENSHGLG00000018263)
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00950000182915.b.b.a.a.l	ENSGT00950000182915.b.b.a.a.k.b	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00950000182915.b.b.a.a.l	ENSGT00950000182915.b.b.a.a.k.b	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578
Long-tailed chinchilla	MODERN SPECIES	122	FARSA (ENSCLAG00000015489)	CALR (ENSCLAG00000012923)	RAD23A (ENSCLAG00000016638)	GADD45GIP1 (ENSCLAG00000015799)	DAND5 (ENSCLAG00000011402)	NFIX (ENSCLAG00000013479)	LYL1 (ENSCLAG00000014483)	TRMT1 (ENSCLAG00000015295)	NACC1 (ENSCLAG00000016122)	IER2 (ENSCLAG00000015309)	CACNA1A (ENSCLAG00000013282)	YJU2B (ENSCLAG00000011790)	MRI1 (ENSCLAG00000013025)	C19orf53 (ENSCLAG00000011489)	ZSWIM4 (ENSCLAG00000011642)	NANOS3 (ENSCLAG00000015139) ##22	ENSCLAG00000015002	CC2D1A (ENSCLAG00000012998)	PODNL1 (ENSCLAG00000013361)	DCAF15 (ENSCLAG00000015146)	RFX1 (ENSCLAG00000013348)	RLN3 (ENSCLAG00000013074)	IL27RA (ENSCLAG00000013752)	PALM3 (ENSCLAG00000016217)	C19orf67 (ENSCLAG00000014973)	PRKACA (ENSCLAG00000015604)	ASF1B (ENSCLAG00000011839)	ADGRL1 (ENSCLAG00000013543)	ENSCLAG00000013773	ADGRE5 (ENSCLAG00000014267)	DDX39A (ENSCLAG00000015069)
Degu	MODERN SPECIES	114	CALR (ENSODEG00000010711)	RAD23A (ENSODEG00000011287)	GADD45GIP1 (ENSODEG00000010728)	ENSODEG00000010129	NFIX (ENSODEG00000010171)	LYL1 (ENSODEG00000010992)	TRMT1 (ENSODEG00000010323)	ENSODEG00000019786	NACC1 (ENSODEG00000009255)	IER2 (ENSODEG00000013532)	CACNA1A (ENSODEG00000009256)	YJU2B (ENSODEG00000009976)	ENSODEG00000010083	C19orf53 (ENSODEG00000009270)	ZSWIM4 (ENSODEG00000009901)	NANOS3 (ENSODEG00000008907) ##22	CC2D1A (ENSODEG00000009306)	PODNL1 (ENSODEG00000009051)	ENSODEG00000011425	DCAF15 (ENSODEG00000010421)	RFX1 (ENSODEG00000011025)	RLN3 (ENSODEG00000009268)	IL27RA (ENSODEG00000009893)	PALM3 (ENSODEG00000008820)	MISP3 (ENSODEG00000009732)	C19orf67 (ENSODEG00000010090)	PRKACA (ENSODEG00000009087)	ASF1B (ENSODEG00000009467)	ENSODEG00000009258	ADGRL1 (ENSODEG00000008624)	ENSODEG00000019750
Guinea pig	MODERN SPECIES	42	KLF1 (ENSCPOG00000000784)	GCDH (ENSCPOG00000027058)	ENSCPOG00000033097	FARSA (ENSCPOG00000000787)	CALR (ENSCPOG00000000791)	GADD45GIP1 (ENSCPOG00000024072)	RAD23A (ENSCPOG00000037407)	NFIX (ENSCPOG00000022563)	LYL1 (ENSCPOG00000036111)	TRMT1 (ENSCPOG00000011754)	NACC1 (ENSCPOG00000022222)	CACNA1A (ENSCPOG00000025184)	YJU2B (ENSCPOG00000006545)	MRI1 (ENSCPOG00000013191)	C19orf53 (ENSCPOG00000013192)	NANOS3 (ENSCPOG00000020727) ##22	CC2D1A (ENSCPOG00000004231)	PODNL1 (ENSCPOG00000021831)	DCAF15 (ENSCPOG00000010084)	RFX1 (ENSCPOG00000010089)	RLN3 (ENSCPOG00000013564)	IL27RA (ENSCPOG00000013567)	IFITM10 (ENSCPOG00000019284)	CTSD (ENSCPOG00000008493)	SYT8 (ENSCPOG00000036706)	TNNI2 (ENSCPOG00000008658)	ENSCPOG00000038479	TNNT3 (ENSCPOG00000005480)	ENSCPOG00000035162	IGF2 (ENSCPOG00000038983)	INS (ENSCPOG00000031250)
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Marmotini	ANCESTRAL SPECIES	41	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Alpin marmot	MODERN SPECIES	24	SYCE2 (ENSMMMG00000020981)	FARSA (ENSMMMG00000020996)	CALR (ENSMMMG00000021010)	ENSMMMG00000021016	GADD45GIP1 (ENSMMMG00000021032)	DAND5 (ENSMMMG00000021038)	NFIX (ENSMMMG00000021044)	LYL1 (ENSMMMG00000021069)	TRMT1 (ENSMMMG00000021080)	NACC1 (ENSMMMG00000021510)	STX10 (ENSMMMG00000021518)	ENSMMMG00000021534	YJU2B (ENSMMMG00000021549)	ENSMMMG00000021583	ZSWIM4 (ENSMMMG00000021589)	NANOS3 (ENSMMMG00000021601) ##22	ENSMMMG00000021612	PODNL1 (ENSMMMG00000021701)	DCAF15 (ENSMMMG00000021706)	RFX1 (ENSMMMG00000021740)	RLN3 (ENSMMMG00000021867)	IL27RA (ENSMMMG00000021869)	C19orf67 (ENSMMMG00000021884)	ENSMMMG00000021895	PRKACA (ENSMMMG00000021903)	ASF1B (ENSMMMG00000021930)	ADGRL1 (ENSMMMG00000021934)	ENSMMMG00000021974	ADGRE5 (ENSMMMG00000021978)	DDX39A (ENSMMMG00000021991)	PKN1 (ENSMMMG00000021999)
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915
Squirrel	MODERN SPECIES	259	CALR (ENSSTOG00000008774)	RAD23A (ENSSTOG00000024117)	GADD45GIP1 (ENSSTOG00000016419)	DAND5 (ENSSTOG00000016420)	NFIX (ENSSTOG00000007848)	LYL1 (ENSSTOG00000028401)	TRMT1 (ENSSTOG00000012531)	NACC1 (ENSSTOG00000007865)	STX10 (ENSSTOG00000007880)	IER2 (ENSSTOG00000007900)	CACNA1A (ENSSTOG00000024862)	YJU2B (ENSSTOG00000006281)	MRI1 (ENSSTOG00000020750)	C19orf53 (ENSSTOG00000011602)	ZSWIM4 (ENSSTOG00000021055)	NANOS3 (ENSSTOG00000024797) ##22	BRME1 (ENSSTOG00000028732)	CC2D1A (ENSSTOG00000019980)	PODNL1 (ENSSTOG00000021014)	DCAF15 (ENSSTOG00000024329)	RFX1 (ENSSTOG00000025432)	RLN3 (ENSSTOG00000024302)	IL27RA (ENSSTOG00000008690)	PALM3 (ENSSTOG00000023133)	C19orf67 (ENSSTOG00000001321)	PRKACA (ENSSTOG00000002327)	ASF1B (ENSSTOG00000002335)	ADGRL1 (ENSSTOG00000024713)	ENSSTOG00000021516	ADGRE5 (ENSSTOG00000013742)	DDX39A (ENSSTOG00000013762)
Arctic ground squirrel	MODERN SPECIES	217	RAD23A (ENSUPAG00010008197)	GADD45GIP1 (ENSUPAG00010008222)	DAND5 (ENSUPAG00010008227)	NFIX (ENSUPAG00010008230)	ENSUPAG00010008329	LYL1 (ENSUPAG00010008333)	TRMT1 (ENSUPAG00010008343)	NACC1 (ENSUPAG00010008354)	STX10 (ENSUPAG00010008362)	IER2 (ENSUPAG00010008375)	CACNA1A (ENSUPAG00010008388)	YJU2B (ENSUPAG00010011639)	MRI1 (ENSUPAG00010011651)	C19orf53 (ENSUPAG00010011656)	ZSWIM4 (ENSUPAG00010011666)	NANOS3 (ENSUPAG00010011697) ##22	BRME1 (ENSUPAG00010011699)	CC2D1A (ENSUPAG00010011706)	PODNL1 (ENSUPAG00010011723)	DCAF15 (ENSUPAG00010011735)	RFX1 (ENSUPAG00010011748)	RLN3 (ENSUPAG00010011794)	IL27RA (ENSUPAG00010011800)	PALM3 (ENSUPAG00010011814)	MISP3 (ENSUPAG00010011828)	C19orf67 (ENSUPAG00010011838)	ENSUPAG00010011851	PRKACA (ENSUPAG00010011860)	ASF1B (ENSUPAG00010011900)	ADGRL1 (ENSUPAG00010011915)	ADGRE5 (ENSUPAG00010012057)
Eurasian red squirrel	MODERN SPECIES	7	NFIX (ENSSVLG00005018211)	LYL1 (ENSSVLG00005018485)	TRMT1 (ENSSVLG00005018534)	NACC1 (ENSSVLG00005018614)	STX10 (ENSSVLG00005018658)	IER2 (ENSSVLG00005018745)	CACNA1A (ENSSVLG00005020388)	ENSSVLG00005024893	ENSSVLG00005024924	ENSSVLG00005024939	ENSSVLG00005024956	YJU2B (ENSSVLG00005024977)	MRI1 (ENSSVLG00005025000)	C19orf53 (ENSSVLG00005025010)	ZSWIM4 (ENSSVLG00005025031)	NANOS3 (ENSSVLG00005025060) ##22	ENSSVLG00005025075	PODNL1 (ENSSVLG00005025116)	DCAF15 (ENSSVLG00005025150)	RFX1 (ENSSVLG00005025184)	RLN3 (ENSSVLG00005025204)	IL27RA (ENSSVLG00005025225)	PALM3 (ENSSVLG00005025246)	MISP3 (ENSSVLG00005025270)	C19orf67 (ENSSVLG00005025279)	ENSSVLG00005025298	PRKACA (ENSSVLG00005025328)	ASF1B (ENSSVLG00005025369)	ENSSVLG00005025395	ENSSVLG00005025403	ADGRE5 (ENSSVLG00005025449)
Anura	ANCESTRAL SPECIES	162													ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00990000204330	ENSGT01100000266472	ENSGT00390000005830	ENSGT00390000007688	ENSGT01050000244941.B.d	ENSGT00950000183036.a.a	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00490000043442	ENSGT00940000157892.b	ENSGT00940000155151.b
Frog	MODERN SPECIES	3	ENSXETG00000037171	ENSXETG00000034841	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	c3 (ENSXETG00000017270)	ENSXETG00000045964	c3p1 (ENSXETG00000048045)	ENSXETG00000042646	tubb4a (ENSXETG00000021860)	dennd1c (ENSXETG00000024511)	crb3 (ENSXETG00000024510)	slc25a23 (ENSXETG00000024509)	khsrp (ENSXETG00000021862)	mri1 (ENSXETG00000021867)	c19orf53 (ENSXETG00000038713)	zswim4 (ENSXETG00000021870)	NANOS3 (ENSXETG00000021874) ##22	cc2d1a (ENSXETG00000005556)	ENSXETG00000037742	dcaf15 (ENSXETG00000005570)	rfx1 (ENSXETG00000005567)	rln3 (ENSXETG00000033085)	ENSXETG00000035478	palm3 (ENSXETG00000005574)	misp3 (ENSXETG00000038750)	clpp (ENSXETG00000005576)	ENSXETG00000032234	alkbh7 (ENSXETG00000005578)	PSPN (ENSXETG00000038258)	gtf2f1 (ENSXETG00000005579)	yju2b (ENSXETG00000025830)	surf4.1 (ENSXETG00000005583)
Leishan spiny toad	MODERN SPECIES	6	CACNA1A (ENSLLEG00000013048)	ENSLLEG00000012941	ENSLLEG00000012514	ENSLLEG00000012469	ENSLLEG00000012200	ENSLLEG00000011916	SLC25A23 (ENSLLEG00000011578)	ENSLLEG00000011499	ENSLLEG00000011461	DENND1C (ENSLLEG00000011348)	ENSLLEG00000011260	KHSRP (ENSLLEG00000011156)	MRI1 (ENSLLEG00000011067)	ENSLLEG00000011033	ENSLLEG00000010795	NANOS3 (ENSLLEG00000010759) ##22	ENSLLEG00000010735	ENSLLEG00000010700	ACHE (ENSLLEG00000010628)	ENSLLEG00000010606	C17orf49 (ENSLLEG00000010539)	RNASEK (ENSLLEG00000010493)	ENSLLEG00000010319	ARRB2 (ENSLLEG00000009872)	ENSLLEG00000009084	ENSLLEG00000008993	ENSLLEG00000008758	ENSLLEG00000012959	ENSLLEG00000012934	ENSLLEG00000012863	ENSLLEG00000012815
Coelacanth	MODERN SPECIES	419										rln3b (ENSLACG00000003121)	ILF3 (ENSLACG00000003810)	SLC44A2 (ENSLACG00000005761)	ENSLACG00000010459	ENSLACG00000010478	ENSLACG00000011962	NANOS3 (ENSLACG00000013286) ##22	ENSLACG00000013365	CC2D1A (ENSLACG00000013556)	PODNL1 (ENSLACG00000014115)	DCAF15 (ENSLACG00000014304)	RFX1 (ENSLACG00000022433)	ENSLACG00000022668	RAD23A (ENSLACG00000014966)	zgc:158403 (ENSLACG00000015276)	GADD45GIP1 (ENSLACG00000015380)	ENSLACG00000015475	ENSLACG00000016266	NFIX (ENSLACG00000016773)	ENSLACG00000017036
Actinopterygii	ANCESTRAL SPECIES	151													ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00940000159016
Neopterygii	ANCESTRAL SPECIES	122																ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00940000159428	ENSGT00940000156051	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00530000063615.b
Osteoglossocephalai	ANCESTRAL SPECIES	9	ENSGT00970000193390.c.b.b.b.a	ENSGT00940000166524	ENSGT00940000166551	ENSGT00530000063679.B	ENSGT00940000155764.A.a	ENSGT00940000158445.f	ENSGT01060000248544.a.a.b.a.a.f	ENSGT00940000164486	ENSGT00940000175509	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000155764.A.b	ENSGT00940000158445.e	ENSGT01060000248544.a.a.b.a.a.e	ENSGT00740000117176	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000158520.f	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000183135.A.b ##22
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	305	MYH9 (ENSPKIG00000006098)	txn2 (ENSPKIG00000006251)	ENSPKIG00000006266	DDX39A (ENSPKIG00000006284)	ENSPKIG00000006317	EVI5L (ENSPKIG00000006369)	ENSPKIG00000006485	ENSPKIG00000006515	ENSPKIG00000006549	PKN1 (ENSPKIG00000006612)	ENSPKIG00000006696	MCOLN1 (ENSPKIG00000006721)	trappc5 (ENSPKIG00000006799)	pglyrp6 (ENSPKIG00000006826)	ENSPKIG00000006866	nanos3 (ENSPKIG00000006905) ##22	ENSPKIG00000006921	ptger1a (ENSPKIG00000006939)	ilf3b (ENSPKIG00000007019)	farsa (ENSPKIG00000007170)	ENSPKIG00000007215	syce2 (ENSPKIG00000007229)	gcdhb (ENSPKIG00000007270)	SLC44A2 (ENSPKIG00000007358)	ENSPKIG00000007418	ENSPKIG00000007434	ENSPKIG00000007453	plppr2a (ENSPKIG00000007463)	tlcd4b (ENSPKIG00000007483)	CNN1 (ENSPKIG00000007513)	tmem205 (ENSPKIG00000007544)
P. kingsleyae	MODERN SPECIES	939																nanos3 (ENSPKIG00000009354) ##22	ENSPKIG00000009342
Asian bonytongue	MODERN SPECIES	13								ENSSFOG00015027812	MRAS (ENSSFOG00015012699)	tmem177 (ENSSFOG00015024422)	PTPN4 (ENSSFOG00015012734)	ppp1r13ba (ENSSFOG00015012867)	atp5mj (ENSSFOG00015031762)	ENSSFOG00015013172	rtn1b (ENSSFOG00015030659)	nanos3 (ENSSFOG00015027553) ##22	ENSSFOG00015013461	PPM1A (ENSSFOG00015013475)	six6b (ENSSFOG00015013501)	SIX1 (ENSSFOG00015013516)	ENSSFOG00015013530	ENSSFOG00015013552	SGPP1 (ENSSFOG00015013571)	ppp2r5eb (ENSSFOG00015013606)	ENSSFOG00015013698	mgat5 (ENSSFOG00015025621)	tmem163a (ENSSFOG00015013757)	acmsd (ENSSFOG00015013796)	CCNT2 (ENSSFOG00015013826)	rab3gap1 (ENSSFOG00015013870)	ZRANB3 (ENSSFOG00015014001)
Clupeocephala	ANCESTRAL SPECIES	148	ENSGT00940000164791.a.b	ENSGT00940000156783.k	ENSGT00940000165036.b	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000166336	ENSGT00940000176019	ENSGT00940000154063.C.a.a.b	ENSGT00390000004692.d.a.m.b	ENSGT00940000166522	ENSGT00530000063936.a.a	ENSGT00940000166147	ENSGT00390000018759	ENSGT00950000182886.a.a.b.s	ENSGT00940000164566.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b
Otomorpha	ANCESTRAL SPECIES	808															ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22
Clupeiformes	ANCESTRAL SPECIES	484															ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b
Atlantic herring	MODERN SPECIES	16	ENSCHAG00000003354	ENSCHAG00000003375	ENSCHAG00000003385	ENSCHAG00000003432	ENSCHAG00000003912	ENSCHAG00000003931	ENSCHAG00000003971	ENSCHAG00000004051	ENSCHAG00000004073	ENSCHAG00000004120	ENSCHAG00000004137	ENSCHAG00000004154	ENSCHAG00000004179	CARM1 (ENSCHAG00000004237)	ENSCHAG00000005447	nanos3 (ENSCHAG00000005459) ##22	ENSCHAG00000005532	mri1 (ENSCHAG00000005847)	zgc:136864 (ENSCHAG00000005869)	ENSCHAG00000005886	khsrp (ENSCHAG00000005963)	cfl1l (ENSCHAG00000006099)	eif4a3 (ENSCHAG00000006162)	ENSCHAG00000006544	ENSCHAG00000006586	tp53bp2b (ENSCHAG00000007128)	ENSCHAG00000007180	ENSCHAG00000007215	ENSCHAG00000007291	ENSCHAG00000007334	ENSCHAG00000007459
Denticle herring	MODERN SPECIES	13	ENSDCDG00000000768	ENSDCDG00000000770	ENSDCDG00000000774	ENSDCDG00000000782	ENSDCDG00000000785	ENSDCDG00000000788	ENSDCDG00000000796	ENSDCDG00000000801	ENSDCDG00000000804	ENSDCDG00000000807	ENSDCDG00000000809	ENSDCDG00000000813	ENSDCDG00000000819	ENSDCDG00000000821	CARM1 (ENSDCDG00000000831)	nanos3 (ENSDCDG00000000843) ##22	CC2D1A (ENSDCDG00000000852)	mri1 (ENSDCDG00000000937)	zgc:136864 (ENSDCDG00000000941)	ENSDCDG00000000944	SLC25A23 (ENSDCDG00000000969)	khsrp (ENSDCDG00000001040)	eif4a3 (ENSDCDG00000001070)	ENSDCDG00000001091	srfa (ENSDCDG00000001094)	ENSDCDG00000001096	ENSDCDG00000001106	tp53bp2b (ENSDCDG00000001141)	gtpbp2b (ENSDCDG00000001304)	ENSDCDG00000001307	ENSDCDG00000001312
Otophysi	ANCESTRAL SPECIES	528														ENSGT01100000263525.a.b.a.b.b.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT00940000165036.b	ENSGT00940000154063.C.a.a.b.c.b	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000166336	ENSGT00940000176019	ENSGT00940000174495	ENSGT00940000162952.c	ENSGT00940000166147.b	ENSGT00390000018759	ENSGT00950000182886.a.a.b.s	ENSGT00940000164566.a	ENSGT01010000222294.c.b.a.b.a.b.a.b	ENSGT01010000222294.c.b.a.b.a.b.a.a.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22	ENSGT00990000210012	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00950000183213.a.a.a	ENSGT00390000017504	ENSGT00940000160809	ENSGT00940000155078.a.b.a.a.a	ENSGT00940000178911	ENSGT00940000154958	ENSGT00530000063867.b.a	ENSGT00940000154186.a.r	ENSGT00940000155337.`b	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00390000011740
Cyprininae	ANCESTRAL SPECIES	361	ENSGT00940000165036.b.b	ENSGT00940000154063.C.a.a.b.c.b.b.a.a	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000166336.b	ENSGT00940000176019.e	ENSGT00940000174495	ENSGT00940000162952.c	ENSGT00940000166147.b	ENSGT00390000018759.r	ENSGT00950000182886.a.a.b.s.g	ENSGT00940000164566.a.e	ENSGT00940000163334.d.l.b	ENSGT01010000222294.c.b.a.b.a.b.a.b.a	ENSGT01010000222294.c.b.a.b.a.b.a.a.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT00950000183135.A.b ##22	ENSGT00990000210012	ENSGT00390000009595.b.c	ENSGT00390000013732.i	ENSGT00950000183213.a.a.a.h	ENSGT00390000017504	ENSGT00940000160809.d	ENSGT00940000155078.a.b.a.a.a	ENSGT00940000178911	ENSGT00940000154186.a.r.j	ENSGT00940000155337.`b.c	ENSGT00950000183050.b.b.b.a.a.a.b.h	ENSGT00390000000583.e	ENSGT00390000011740.h
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3315										ENSCARG00000050681	ENSCARG00000050650	ENSCARG00000050621	ENSCARG00000050596	ENSCARG00000050560	si:ch211-286b5.5 (ENSCARG00000050550)	nanos3 (ENSCARG00000050544) ##22	ENSCARG00000050534	CC2D1A (ENSCARG00000049716)	mri1 (ENSCARG00000049683)	zgc:158803 (ENSCARG00000049558)	pane1 (ENSCARG00000049511)
Goldfish	MODERN SPECIES	1251								ENSCARG00000042326	ENSCARG00000042316	ENSCARG00000042292	ENSCARG00000042283	ENSCARG00000042195	ENSCARG00000042270	ENSCARG00000042161	si:ch211-286b5.5 (ENSCARG00000042150)	nanos3 (ENSCARG00000042137) ##22	ENSCARG00000042107	mri1 (ENSCARG00000041547)	zgc:158803 (ENSCARG00000041369)	pane1 (ENSCARG00000041307)	mb (ENSCARG00000041292)	rab1aa (ENSCARG00000041286)	ENSCARG00000041258	aftpha (ENSCARG00000041248)	lgalsla (ENSCARG00000041223)	ENSCARG00000041211	ENSCARG00000041200	vps54 (ENSCARG00000040856)	ENSCARG00000040812	ENSCARG00000040525	khsrp (ENSCARG00000039473)
Cyprininae_a	ANCESTRAL SPECIES	211	ENSGT00940000154063.C.a.a.b.d.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.c.b.a.a.b.b.b.b.a.b.b	ENSGT00390000004692.d.a.m.a.a	ENSGT00940000166522.e	ENSGT00940000174495	ENSGT00940000162952.c	ENSGT00530000063936.a.a.h	ENSGT00940000166147.b	ENSGT00390000018759.r	ENSGT00950000182886.a.a.b.s.g	ENSGT00940000164566.a.e	ENSGT00940000163334.d.l.b	ENSGT01010000222294.c.b.a.b.a.b.a.b.a	ENSGT01010000222294.c.b.a.b.a.b.a.a.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b.d	ENSGT00390000013732.j	ENSGT00950000183213.a.a.a.g	ENSGT00940000160809.c	ENSGT00940000155078.a.b.a.a.b	ENSGT00940000154958	ENSGT00530000063867.b.a	ENSGT00940000154186.a.r.i.a	ENSGT00940000155337.`b.d	ENSGT00950000183050.b.b.b.a.a.a.b.g	ENSGT00390000000583.f	ENSGT00390000011740.g	ENSGT00940000161004	ENSGT00940000159428.e.a.b	ENSGT00940000156051.c.b.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	251													ENSSGRG00000025377	ENSSGRG00000025379	si:ch211-286b5.5 (ENSSGRG00000025382)	nanos3 (ENSSGRG00000025384) ##22	ENSSGRG00000025386	CC2D1A (ENSSGRG00000025390)	mri1 (ENSSGRG00000025392)	zgc:158803 (ENSSGRG00000025393)	pane1 (ENSSGRG00000025421)	mb (ENSSGRG00000025422)	rab1aa (ENSSGRG00000025424)	ENSSGRG00000025518	ENSSGRG00000025521	lgalsla (ENSSGRG00000025523)	ENSSGRG00000025524	vps54 (ENSSGRG00000025530)	zgc:136864 (ENSSGRG00000025726)	ENSSGRG00000025730	khsrp (ENSSGRG00000025834)
Golden-line barbel	MODERN SPECIES	180	asf1bb (ENSSGRG00000037742)	prkacab (ENSSGRG00000037762)	ENSSGRG00000039272	ENSSGRG00000039274	zgc:136908 (ENSSGRG00000039291)	ndufb7 (ENSSGRG00000040855)	tecrb (ENSSGRG00000040863)	dnajb1b (ENSSGRG00000041226)	ENSSGRG00000041232	ENSSGRG00000041234	ENSSGRG00000041240	ENSSGRG00000041247	ENSSGRG00000041249	ENSSGRG00000041251	si:ch211-286b5.5 (ENSSGRG00000041252)	nanos3 (ENSSGRG00000041255) ##22	CC2D1A (ENSSGRG00000041257)	mri1 (ENSSGRG00000041277)	zgc:158803 (ENSSGRG00000041281)	mb (ENSSGRG00000041283)	RAB1B (ENSSGRG00000041286)	ENSSGRG00000041453	aftpha (ENSSGRG00000041455)	ENSSGRG00000041579	lgalsla (ENSSGRG00000041580)	ENSSGRG00000041582	vps54 (ENSSGRG00000041583)	zgc:136864 (ENSSGRG00000041588)	ENSSGRG00000041589	ENSSGRG00000041593	khsrp (ENSSGRG00000041861)
Common carp reference	MODERN SPECIES	9	tcf25 (ENSCCRG00000081336)	ENSCCRG00000079185	ENSCCRG00000064415	ENSCCRG00000056323	ENSCCRG00000044104	ENSCCRG00000080307	ENSCCRG00000039102	ENSCCRG00000033823 ##22	ENSCCRG00000078381	ENSCCRG00000005860	ENSCCRG00000047014	ENSCCRG00000024977	ENSCCRG00000059218	ENSCCRG00000036901	ENSCCRG00000058205	ENSCCRG00000028796 ##22	ENSCCRG00000069962	ENSCCRG00000048271	ENSCCRG00000065148	ENSCCRG00000072079	ENSCCRG00000058783	ENSCCRG00000042257	ENSCCRG00000058862	ENSCCRG00000013783	IRF8 (ENSCCRG00000015195)	ENSCCRG00000040531	ENSCCRG00000064198	ENSCCRG00000075116	ENSCCRG00000038231	ENSCCRG00000061588	ENSCCRG00000061228
Zebrafish	MODERN SPECIES		ENSDARG00000096644	ENSDARG00000086117	ENSDARG00000096649	ENSDARG00000096588	ENSDARG00000096622	ENSDARG00000096577	ENSDARG00000096579	ENSDARG00000087148	ENSDARG00000086166	ENSDARG00000096625	zgc:172106 (ENSDARG00000017984)	ENSDARG00000096576	ENSDARG00000110697	si:ch211-286b5.5 (ENSDARG00000096661)	ENSDARG00000089765	nanos3 (ENSDARG00000068255) ##22	ENSDARG00000096514	CC2D1A (ENSDARG00000036281)	mri1 (ENSDARG00000075754)	zgc:158803 (ENSDARG00000019765)	pane1 (ENSDARG00000024681)	mb (ENSDARG00000031952)	rab1aa (ENSDARG00000052263)	ENSDARG00000093412	aftpha (ENSDARG00000069249)	lgalsla (ENSDARG00000059060)	ENSDARG00000091592	zgc:136864 (ENSDARG00000059816)	vps54 (ENSDARG00000102960)	ENSDARG00000028276	ENSDARG00000005690
Characiphysae	ANCESTRAL SPECIES	32	ENSGT00940000154394.b.a.a.b.a.b	ENSGT00940000166336	ENSGT00940000176019	ENSGT00940000154063.C.a.a.b.c.d	ENSGT00390000004692.d.a.m.a	ENSGT00940000166522.g	ENSGT00940000174495	ENSGT00530000063936.a.a	ENSGT00940000166147	ENSGT00390000018759	ENSGT00950000182886.a.a.b.s	ENSGT00940000164566.a	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT01100000263525.a.b.a.b.b.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00950000183213.a.a.a	ENSGT00390000017504	ENSGT00940000160809	ENSGT00940000155078.a.b.a.a	ENSGT00940000178911	ENSGT00940000177082	ENSGT00940000154186.a.r	ENSGT00940000155337.`b	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	88																nanos3 (ENSIPUG00000007200) ##22
Channel catfish	MODERN SPECIES	16	ENSIPUG00000012960	ENSIPUG00000012944	nfe2l3 (ENSIPUG00000012932)	ENSIPUG00000012923	cbx3a (ENSIPUG00000012872)	zgc:86598 (ENSIPUG00000012631)	ENSIPUG00000012567	ENSIPUG00000012536	hsf1 (ENSIPUG00000012482)	ENSIPUG00000012441	exosc7 (ENSIPUG00000012381)	fam203a (ENSIPUG00000012316)	scx (ENSIPUG00000012296)	bop1 (ENSIPUG00000012277)	ENSIPUG00000012259	nanos3 (ENSIPUG00000012246) ##22	ENSIPUG00000012240	edn1 (ENSIPUG00000012227)	hivep1 (ENSIPUG00000012191)	tmem170b (ENSIPUG00000012167)	nedd9 (ENSIPUG00000012154)	dync1li1 (ENSIPUG00000012095)	cpne4 (ENSIPUG00000011946)	mrpl3 (ENSIPUG00000011902)	ptpn23b (ENSIPUG00000011848)	ENSIPUG00000011829	snx10a (ENSIPUG00000011823)	hoxa1a (ENSIPUG00000011815)	hoxa3a (ENSIPUG00000011808)	HOXA4 (ENSIPUG00000011805)	hoxa9a (ENSIPUG00000011781)
Channel catfish	MODERN SPECIES	18	ENSIPUG00000009534	ENSIPUG00000009416	asf1b (ENSIPUG00000009347)	prkaca (ENSIPUG00000009283)	ENSIPUG00000009271	NDUFB7 (ENSIPUG00000009254)	tecrb (ENSIPUG00000009067)	dnajb1 (ENSIPUG00000009048)	ENSIPUG00000009019	ENSIPUG00000009000	ENSIPUG00000008956	ENSIPUG00000008934	ENSIPUG00000008897	si:ch211-286b5.5 (ENSIPUG00000008882)	ENSIPUG00000008866	nanos3 (ENSIPUG00000008857) ##22	ENSIPUG00000008803	mri1 (ENSIPUG00000008756)	LUC7L2 (ENSIPUG00000008734)	pane1 (ENSIPUG00000008705)	mb (ENSIPUG00000008680)	rab1a (ENSIPUG00000008650)	ENSIPUG00000008638	ENSIPUG00000008625	aftph (ENSIPUG00000008613)	grpb (ENSIPUG00000008575)	ENSIPUG00000008563	VPS54 (ENSIPUG00000008415)	c26h19orf53 (ENSIPUG00000008390)	ENSIPUG00000008372	SLC25A23 (ENSIPUG00000008144)
Characiphysae_b	ANCESTRAL SPECIES	49										ENSGT01100000263535.b.b	ENSGT01010000222294.c.b.a.a.a.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT01100000263525.a.b.a.b.b.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00950000183213.a.a.a	ENSGT00390000017504	ENSGT00940000160809	ENSGT00940000155078.a.b.a.a	ENSGT00940000178911	ENSGT00940000154186.a.r	ENSGT00940000155337.`b	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b
Electric eel	MODERN SPECIES	904											ENSEEEG00000021403	ENSEEEG00000021401	ENSEEEG00000021394	ENSEEEG00000021392	si:ch211-286b5.5 (ENSEEEG00000021387)	nanos3 (ENSEEEG00000021386) ##22	ENSEEEG00000021383
Characoidei	ANCESTRAL SPECIES	54	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e	ENSGT00940000165798	ENSGT00940000159323.b.a	ENSGT00970000193390.c.b.a.a.a.a.a.a	ENSGT01030000234583.a.a.c.b.a.b.c.a.a	ENSGT01100000263535.b.b	ENSGT01010000222294.c.b.a.a.a.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT01100000263541.a.a.a.b.b.a.c.c.b	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT01100000263525.a.b.a.b.b.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00950000183213.a.a.a	ENSGT00390000017504	ENSGT00940000160809	ENSGT00940000155078.a.b.a.a	ENSGT00940000178911	ENSGT00940000154186.a.r	ENSGT00940000155337.`b	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b
Mexicana tetra	MODERN SPECIES	3	slc27a1b (ENSAMXG00000015582)	ENSAMXG00000033729	ENSAMXG00000029883	ENSAMXG00000033310	ENSAMXG00000034119	ENSAMXG00000017788	ENSAMXG00000032384	ENSAMXG00000039556	ENSAMXG00000030599	ENSAMXG00000007630	ENSAMXG00000029205	ENSAMXG00000035878	ENSAMXG00000012113	si:ch211-286b5.5 (ENSAMXG00000012105)	ENSAMXG00000012102	ENSAMXG00000034714 ##22	CC2D1A (ENSAMXG00000012041)	mri1 (ENSAMXG00000011982)	zgc:158803 (ENSAMXG00000042216)	pane1 (ENSAMXG00000036381)	mb (ENSAMXG00000030396)	ENSAMXG00000034850	ENSAMXG00000029475	ENSAMXG00000030121	aftpha (ENSAMXG00000033598)	lgalsla (ENSAMXG00000032614)	ENSAMXG00000038207	vps54 (ENSAMXG00000011759)	ENSAMXG00000030674	ENSAMXG00000011734	ENSAMXG00000011724
Red-bellied piranha	MODERN SPECIES	206	ENSPNAG00000011880	ENSPNAG00000001989	zfyve27 (ENSPNAG00000002003)	golga7ba (ENSPNAG00000011927)	crtac1a (ENSPNAG00000002039)	ENSPNAG00000002051	khsrp (ENSPNAG00000012026)	SLC25A23 (ENSPNAG00000012055)	ENSPNAG00000002085	zgc:136864 (ENSPNAG00000012075)	vps54 (ENSPNAG00000012220)	ENSPNAG00000012347	lgalsla (ENSPNAG00000012375)	aftpha (ENSPNAG00000002239)	ENSPNAG00000012418	nanos3 (ENSPNAG00000002259) ##22	ENSPNAG00000012488	mri1 (ENSPNAG00000012506)	mb (ENSPNAG00000002280)	rab1aa (ENSPNAG00000012540)	ENSPNAG00000012560
Euteleosteomorpha	ANCESTRAL SPECIES	68											ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Protacanthopterygii	ANCESTRAL SPECIES	67	ENSGT00940000161116.w.a	ENSGT00390000007463	ENSGT00390000004428.a.a	ENSGT00920000149199	ENSGT01080000257365.a.c	ENSGT01030000234586.B.a.a.b	ENSGT00940000157836.a	ENSGT00950000182983.A.a.a.a	ENSGT00950000183145.A.a.m.a	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b.c	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	172												ENSGT00940000156038.a.a.d.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.a ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.r ##22	ENSGT00390000009595.b.g	ENSGT00390000009595.b.h.a.a	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.c	ENSGT00940000158786	ENSGT00940000156051.c.b.c	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.d	ENSGT00950000182849.B.c.a.a.c
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	9802																nanos3 (ENSHHUG00000008492) ##22
Huchen	MODERN SPECIES	10367																ENSHHUG00000010772 ##22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5699																nanos3 (ENSHHUG00000031420) ##22	ENSHHUG00000031424	nanos3 (ENSHHUG00000031454) ##22	ENSHHUG00000031456	ENSHHUG00000031467	ENSHHUG00000031473	ENSHHUG00000031475
Huchen	MODERN SPECIES	11054																nanos3 (ENSHHUG00000012409) ##22
Salmoninae_a	ANCESTRAL SPECIES	202											ENSGT00940000156038.a.a.d.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.b.a ##22	ENSGT00950000183135.A.b.q.a ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.r ##22	ENSGT00390000009595.b.g
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183135.A.b.q.a ##22
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000063401	ENSOMYG00000053490	ENSOMYG00000074686	ENSOMYG00000073659	ENSOMYG00000053871	ENSOMYG00000004288	ENSOMYG00000053707	ENSOMYG00000060284	ENSOMYG00000052014	ENSOMYG00000004137	ENSOMYG00000068304	ENSOMYG00000004060	ENSOMYG00000077591	ENSOMYG00000058636	nanos3 (ENSOMYG00000056380) ##22	nanos3 (ENSOMYG00000054328) ##22	nanos3 (ENSOMYG00000067935) ##22	ENSOMYG00000005126	ENSOMYG00000058002	CC2D1A (ENSOMYG00000048915)	mri1 (ENSOMYG00000076834)	L10K (ENSOMYG00000058705)	ENSOMYG00000058360	ENSOMYG00000050175	khsrp (ENSOMYG00000005087)	DCAF15 (ENSOMYG00000059287)	ENSOMYG00000048738	rln3b (ENSOMYG00000073855)	ENSOMYG00000076576	ENSOMYG00000049505	ENSOMYG00000073673
Salmo	ANCESTRAL SPECIES	143									ENSGT01100000263529.a.a.b.j.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.b.a ##22	ENSGT00950000183135.A.b.r.d ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.q.a ##22	ENSGT00390000009595.b.g.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.d	ENSGT00940000161004.c	ENSGT00940000158786.mb	ENSGT00940000156051.c.b.c.b	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b.c.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.c.a	ENSGT00510000047513.g
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000113301	ENSSSAG00000047847	ENSSSAG00000081839	ENSSSAG00000047806	ENSSSAG00000047841	ENSSSAG00000107043	ENSSSAG00000059375	ENSSSAG00000005317	ENSSSAG00000086372	ENSSSAG00000102773	ENSSSAG00000048888	ENSSSAG00000117218	ENSSSAG00000120073	ENSSSAG00000005987	nanos3 (ENSSSAG00000005994) ##22	nanos3 (ENSSSAG00000091901) ##22	ENSSSAG00000025650	nanos3 (ENSSSAG00000101547) ##22	ENSSSAG00000000244	ENSSSAG00000094029	mri1 (ENSSSAG00000093663)	ENSSSAG00000005297	ENSSSAG00000113524	ENSSSAG00000040421	khsrp (ENSSSAG00000111558)	DCAF15 (ENSSSAG00000119795)	ENSSSAG00000114259	rln3b (ENSSSAG00000009959)	ENSSSAG00000107317	ENSSSAG00000094752	ENSSSAG00000096309
River trout	MODERN SPECIES	5	ENSSTUG00000002251	ENSSTUG00000002245	UBL5 (ENSSTUG00000002242)	pin1 (ENSSTUG00000002196)	ENSSTUG00000002017	ENSSTUG00000001777	ENSSTUG00000007086	ENSSTUG00000007074	ENSSTUG00000007063	ENSSTUG00000007060	ENSSTUG00000007052	ENSSTUG00000007039	ENSSTUG00000007034	CARM1 (ENSSTUG00000006427)	ENSSTUG00000006402	nanos3 (ENSSTUG00000006390) ##22	ENSSTUG00000006384	ENSSTUG00000006380	ENSSTUG00000006376	ENSSTUG00000006347	nanos3 (ENSSTUG00000006332) ##22	ENSSTUG00000006328	nanos3 (ENSSTUG00000006319) ##22	ENSSTUG00000006314	ENSSTUG00000006309	ENSSTUG00000006305	ENSSTUG00000006295	ENSSTUG00000006291	ENSSTUG00000006224	CC2D1A (ENSSTUG00000006112)	mri1 (ENSSTUG00000006094)
Salmoninae	ANCESTRAL SPECIES	1653															ENSGT00940000177102	ENSGT00950000183135.A.b.q.b ##22
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	202												ENSGT00940000156038.a.a.d.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.b.a ##22	ENSGT00950000183135.A.b.q.a ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.r ##22	ENSGT00390000009595.b.g
Salmo	ANCESTRAL SPECIES	143												ENSGT01100000263529.a.a.b.j.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.b.a ##22	ENSGT00950000183135.A.b.r.d ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.q.a ##22	ENSGT00390000009595.b.g.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.d	ENSGT00940000161004.c	ENSGT00940000158786.mb	ENSGT00940000156051.c.b.c.b	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b.c.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b
River trout	MODERN SPECIES	31	dnajb1b (ENSSTUG00000031683)	ENSSTUG00000031691	ENSSTUG00000031728	ENSSTUG00000031749	ENSSTUG00000031763	ENSSTUG00000031766	ENSSTUG00000031771	ENSSTUG00000031791	ENSSTUG00000031809	ENSSTUG00000031827	ENSSTUG00000031850	ENSSTUG00000031871	ENSSTUG00000031887	CARM1 (ENSSTUG00000031935)	ENSSTUG00000033033 ##22	nanos3 (ENSSTUG00000033035) ##22	nanos3 (ENSSTUG00000033046) ##22	ENSSTUG00000033066	ENSSTUG00000033096	ENSSTUG00000033138	ENSSTUG00000033153	ENSSTUG00000033163	nxnl1 (ENSSTUG00000033164)	ENSSTUG00000033184	ENSSTUG00000033192	ENSSTUG00000033220	ENSSTUG00000033233	ENSSTUG00000033270	ENSSTUG00000033297	ENSSTUG00000033310	GPR108 (ENSSTUG00000033329)
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000084550	ENSSSAG00000113301	ENSSSAG00000047847	ENSSSAG00000081839	ENSSSAG00000047806	ENSSSAG00000047841	ENSSSAG00000107043	ENSSSAG00000059375	ENSSSAG00000005317	ENSSSAG00000086372	ENSSSAG00000102773	ENSSSAG00000048888	ENSSSAG00000117218	ENSSSAG00000120073	ENSSSAG00000005987	nanos3 (ENSSSAG00000005994) ##22	nanos3 (ENSSSAG00000091901) ##22	ENSSSAG00000025650	nanos3 (ENSSSAG00000101547) ##22	ENSSSAG00000000244	ENSSSAG00000094029	mri1 (ENSSSAG00000093663)	ENSSSAG00000005297	ENSSSAG00000113524	ENSSSAG00000040421	khsrp (ENSSSAG00000111558)	DCAF15 (ENSSSAG00000119795)	ENSSSAG00000114259	rln3b (ENSSSAG00000009959)	ENSSSAG00000107317	ENSSSAG00000094752
Salmoninae_a	ANCESTRAL SPECIES	582															ENSGT00940000177102	ENSGT00950000183135.A.b.q.b.b ##22
Salmo	ANCESTRAL SPECIES	383																ENSGT00950000183135.A.b.q.b.b ##22	ENSGT00950000183135.A.b.r.c ##22	ENSGT00390000009595.b.g.a
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000089213	ENSSSAG00000087340	ENSSSAG00000059345	ENSSSAG00000114260	ENSSSAG00000111695	ENSSSAG00000047799	ENSSSAG00000095256	ENSSSAG00000082852	ENSSSAG00000000783	ENSSSAG00000114758	ENSSSAG00000100280	ENSSSAG00000089645	dnajb1b (ENSSSAG00000097682)	ENSSSAG00000101734	zgc:136908 (ENSSSAG00000098555)	nanos3 (ENSSSAG00000095615) ##22	nanos3 (ENSSSAG00000112104) ##22	ENSSSAG00000113702	mri1 (ENSSSAG00000113846)	ENSSSAG00000015555	ENSSSAG00000110536	ENSSSAG00000101645	ENSSSAG00000001147	ENSSSAG00000082240	ENSSSAG00000015091	ENSSSAG00000043422	ENSSSAG00000106981	ENSSSAG00000042177	ENSSSAG00000110868	ENSSSAG00000086587	NTHL1 (ENSSSAG00000000591)
River trout	MODERN SPECIES	31	tecrb (ENSSTUG00000031562)	dnajb1b (ENSSTUG00000031683)	ENSSTUG00000031691	ENSSTUG00000031728	ENSSTUG00000031749	ENSSTUG00000031763	ENSSTUG00000031766	ENSSTUG00000031771	ENSSTUG00000031791	ENSSTUG00000031809	ENSSTUG00000031827	ENSSTUG00000031850	ENSSTUG00000031871	ENSSTUG00000031887	CARM1 (ENSSTUG00000031935)	ENSSTUG00000033033 ##22	nanos3 (ENSSTUG00000033035) ##22	nanos3 (ENSSTUG00000033046) ##22	ENSSTUG00000033066	ENSSTUG00000033096	ENSSTUG00000033138	ENSSTUG00000033153	ENSSTUG00000033163	nxnl1 (ENSSTUG00000033164)	ENSSTUG00000033184	ENSSTUG00000033192	ENSSTUG00000033220	ENSSTUG00000033233	ENSSTUG00000033270	ENSSTUG00000033297	ENSSTUG00000033310
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	171														ENSGT01100000263525.a.b.a.a.c	ENSGT00940000160377.g.a	ENSGT00950000183135.A.b.q.b.b.a ##22	ENSGT00950000183135.A.b.r.e ##22	ENSGT00990000206034.h	ENSGT00390000009595.b.h.a.a	ENSGT00390000011740.e.b	ENSGT00940000161004.d	ENSGT01000000220374
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183135.A.b.q.b.b.a ##22
Coho salmon	MODERN SPECIES	30	dnajb1b (ENSOKIG00005039036)	ENSOKIG00005038997	ENSOKIG00005038976	ENSOKIG00005038885	ENSOKIG00005049587	ENSOKIG00005049582	ENSOKIG00005049580	ENSOKIG00005049578	ENSOKIG00005049573	ENSOKIG00005049567	ENSOKIG00005049556	ENSOKIG00005049548	ENSOKIG00005049538	CARM1 (ENSOKIG00005049288)	ENSOKIG00005049243	nanos3 (ENSOKIG00005049238) ##22	ENSOKIG00005049227	CC2D1A (ENSOKIG00005049204)	mri1 (ENSOKIG00005049192)	zgc:136864 (ENSOKIG00005049185)	ENSOKIG00005049183	ENSOKIG00005049158	khsrp (ENSOKIG00005049126)	DCAF15 (ENSOKIG00005049117)	ENSOKIG00005049116	RFX1 (ENSOKIG00005049109)	rln3b (ENSOKIG00005049103)	TNPO2 (ENSOKIG00005049074)	ENSOKIG00005049048	ENSOKIG00005049043	ENSOKIG00005048949
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000056653	ENSOMYG00000061951	ENSOMYG00000063631	ENSOMYG00000056562	ENSOMYG00000004023	ENSOMYG00000077741	ENSOMYG00000074940	ENSOMYG00000076398	ENSOMYG00000018593	ENSOMYG00000061713	ENSOMYG00000052790	ENSOMYG00000049612	ENSOMYG00000056741	ENSOMYG00000075563	ENSOMYG00000067018	nanos3 (ENSOMYG00000076039) ##22	nanos3 (ENSOMYG00000067904) ##22	ENSOMYG00000034206	ENSOMYG00000054937	mri1 (ENSOMYG00000065715)	L10K (ENSOMYG00000005223)	ENSOMYG00000076202	ENSOMYG00000053619	ENSOMYG00000068107	ENSOMYG00000072694	khsrp (ENSOMYG00000060752)	DCAF15 (ENSOMYG00000060337)	ENSOMYG00000053627	rln3b (ENSOMYG00000035854)	ENSOMYG00000009981	ENSOMYG00000058288
Oncorhynchus	ANCESTRAL SPECIES	243												ENSGT00940000156038.a.a.d.a.a	ENSGT01100000263525.a.b.a.a.d	ENSGT00940000160377.g.b	ENSGT00940000177102	ENSGT00950000183135.A.b.q.b.b.b ##22
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000005464	ENSOMYG00000063401	ENSOMYG00000053490	ENSOMYG00000074686	ENSOMYG00000073659	ENSOMYG00000053871	ENSOMYG00000004288	ENSOMYG00000053707	ENSOMYG00000060284	ENSOMYG00000052014	ENSOMYG00000004137	ENSOMYG00000068304	ENSOMYG00000004060	ENSOMYG00000077591	ENSOMYG00000058636	nanos3 (ENSOMYG00000056380) ##22	nanos3 (ENSOMYG00000054328) ##22	nanos3 (ENSOMYG00000067935) ##22	ENSOMYG00000005126	ENSOMYG00000058002	CC2D1A (ENSOMYG00000048915)	mri1 (ENSOMYG00000076834)	L10K (ENSOMYG00000058705)	ENSOMYG00000058360	ENSOMYG00000050175	khsrp (ENSOMYG00000005087)	DCAF15 (ENSOMYG00000059287)	ENSOMYG00000048738	rln3b (ENSOMYG00000073855)	ENSOMYG00000076576	ENSOMYG00000049505
Oncorhynchus_a	ANCESTRAL SPECIES	229													ENSGT01100000263525.a.b.a.a.d	ENSGT00940000160377.g.b	ENSGT00940000177102	ENSGT00950000183135.A.b.q.b.b.b ##22	ENSGT00990000206034.h.b	ENSGT00390000009595.b.h.a.a	ENSGT00390000013732	ENSGT00390000011740.e.b	ENSGT00940000161004.d	ENSGT01000000220374
Coho salmon	MODERN SPECIES	1458												ENSOKIG00005032161	ENSOKIG00005032138	CARM1 (ENSOKIG00005031936)	ENSOKIG00005031901	nanos3 (ENSOKIG00005031888) ##22	ENSOKIG00005031822	CC2D1A (ENSOKIG00005031775)	mri1 (ENSOKIG00005031749)	zgc:136864 (ENSOKIG00005031731)	ENSOKIG00005031721	ENSOKIG00005031709
Salmoninae	ANCESTRAL SPECIES	172										ENSGT00940000156038.a.a.d.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.a ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.r ##22	ENSGT00390000009595.b.g	ENSGT00390000009595.b.h.a.a	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.c	ENSGT00940000158786	ENSGT00940000156051.c.b.c	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.d	ENSGT00950000182849.B.c.a.a.c	ENSGT00510000047513.h	ENSGT00950000183139.C.i.b.a
Huchen	DUPLICATION
Huchen	MODERN SPECIES	9594																nanos3 (ENSHHUG00000040410) ##22
Huchen	MODERN SPECIES	5699														nanos3 (ENSHHUG00000031420) ##22	ENSHHUG00000031424	nanos3 (ENSHHUG00000031454) ##22	ENSHHUG00000031456	ENSHHUG00000031467	ENSHHUG00000031473	ENSHHUG00000031475
Salmoninae_a	ANCESTRAL SPECIES	202									ENSGT00940000156038.a.a.d.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.b.a ##22	ENSGT00950000183135.A.b.q.a ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.r ##22	ENSGT00390000009595.b.g
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	383															ENSGT00950000183135.A.b.q.b.b ##22	ENSGT00950000183135.A.b.r.c ##22	ENSGT00390000009595.b.g.a
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000087340	ENSSSAG00000059345	ENSSSAG00000114260	ENSSSAG00000111695	ENSSSAG00000047799	ENSSSAG00000095256	ENSSSAG00000082852	ENSSSAG00000000783	ENSSSAG00000114758	ENSSSAG00000100280	ENSSSAG00000089645	dnajb1b (ENSSSAG00000097682)	ENSSSAG00000101734	zgc:136908 (ENSSSAG00000098555)	nanos3 (ENSSSAG00000095615) ##22	nanos3 (ENSSSAG00000112104) ##22	ENSSSAG00000113702	mri1 (ENSSSAG00000113846)	ENSSSAG00000015555	ENSSSAG00000110536	ENSSSAG00000101645	ENSSSAG00000001147	ENSSSAG00000082240	ENSSSAG00000015091	ENSSSAG00000043422	ENSSSAG00000106981	ENSSSAG00000042177	ENSSSAG00000110868	ENSSSAG00000086587	NTHL1 (ENSSSAG00000000591)	ENSSSAG00000004566
River trout	MODERN SPECIES	31	ENSSTUG00000031691	ENSSTUG00000031728	ENSSTUG00000031749	ENSSTUG00000031763	ENSSTUG00000031766	ENSSTUG00000031771	ENSSTUG00000031791	ENSSTUG00000031809	ENSSTUG00000031827	ENSSTUG00000031850	ENSSTUG00000031871	ENSSTUG00000031887	CARM1 (ENSSTUG00000031935)	ENSSTUG00000033033 ##22	nanos3 (ENSSTUG00000033035) ##22	nanos3 (ENSSTUG00000033046) ##22	ENSSTUG00000033066	ENSSTUG00000033096	ENSSTUG00000033138	ENSSTUG00000033153	ENSSTUG00000033163	nxnl1 (ENSSTUG00000033164)	ENSSTUG00000033184	ENSSTUG00000033192	ENSSTUG00000033220	ENSSTUG00000033233	ENSSTUG00000033270	ENSSTUG00000033297	ENSSTUG00000033310	GPR108 (ENSSTUG00000033329)	ENSSTUG00000033879
Salmo	ANCESTRAL SPECIES	143											ENSGT01100000263529.a.a.b.j.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.b.a ##22	ENSGT00950000183135.A.b.r.d ##22	ENSGT00990000206034	ENSGT00950000183135.A.b.q.a ##22	ENSGT00390000009595.b.g.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.d	ENSGT00940000161004.c	ENSGT00940000158786.mb	ENSGT00940000156051.c.b.c.b	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b.c.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a
River trout	DUPLICATION
River trout	MODERN SPECIES	5	ENSSTUG00000007074	ENSSTUG00000007063	ENSSTUG00000007060	ENSSTUG00000007052	ENSSTUG00000007039	ENSSTUG00000007034	CARM1 (ENSSTUG00000006427)	ENSSTUG00000006402	nanos3 (ENSSTUG00000006390) ##22	ENSSTUG00000006384	ENSSTUG00000006380	ENSSTUG00000006376	ENSSTUG00000006347	nanos3 (ENSSTUG00000006332) ##22	ENSSTUG00000006328	nanos3 (ENSSTUG00000006319) ##22	ENSSTUG00000006314	ENSSTUG00000006309	ENSSTUG00000006305	ENSSTUG00000006295	ENSSTUG00000006291	ENSSTUG00000006224	CC2D1A (ENSSTUG00000006112)	mri1 (ENSSTUG00000006094)	zgc:136864 (ENSSTUG00000006081)	ENSSTUG00000006072	ENSSTUG00000006064	ENSSTUG00000006030	khsrp (ENSSTUG00000005877)	DCAF15 (ENSSTUG00000005854)	ENSSTUG00000005852
River trout	MODERN SPECIES	5	ENSSTUG00000001777	ENSSTUG00000007086	ENSSTUG00000007074	ENSSTUG00000007063	ENSSTUG00000007060	ENSSTUG00000007052	ENSSTUG00000007039	ENSSTUG00000007034	CARM1 (ENSSTUG00000006427)	ENSSTUG00000006402	nanos3 (ENSSTUG00000006390) ##22	ENSSTUG00000006384	ENSSTUG00000006380	ENSSTUG00000006376	ENSSTUG00000006347	nanos3 (ENSSTUG00000006332) ##22	ENSSTUG00000006328	nanos3 (ENSSTUG00000006319) ##22	ENSSTUG00000006314	ENSSTUG00000006309	ENSSTUG00000006305	ENSSTUG00000006295	ENSSTUG00000006291	ENSSTUG00000006224	CC2D1A (ENSSTUG00000006112)	mri1 (ENSSTUG00000006094)	zgc:136864 (ENSSTUG00000006081)	ENSSTUG00000006072	ENSSTUG00000006064	ENSSTUG00000006030	khsrp (ENSSTUG00000005877)
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000081839	ENSSSAG00000047806	ENSSSAG00000047841	ENSSSAG00000107043	ENSSSAG00000059375	ENSSSAG00000005317	ENSSSAG00000086372	ENSSSAG00000102773	ENSSSAG00000048888	ENSSSAG00000117218	ENSSSAG00000120073	ENSSSAG00000005987	nanos3 (ENSSSAG00000005994) ##22	nanos3 (ENSSSAG00000091901) ##22	ENSSSAG00000025650	nanos3 (ENSSSAG00000101547) ##22	ENSSSAG00000000244	ENSSSAG00000094029	mri1 (ENSSSAG00000093663)	ENSSSAG00000005297	ENSSSAG00000113524	ENSSSAG00000040421	khsrp (ENSSSAG00000111558)	DCAF15 (ENSSSAG00000119795)	ENSSSAG00000114259	rln3b (ENSSSAG00000009959)	ENSSSAG00000107317	ENSSSAG00000094752	ENSSSAG00000096309	ENSSSAG00000083657	NTHL1 (ENSSSAG00000097563)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	171													ENSGT01100000263525.a.b.a.a.c	ENSGT00940000160377.g.a	ENSGT00950000183135.A.b.q.b.b.a ##22	ENSGT00950000183135.A.b.r.e ##22	ENSGT00990000206034.h	ENSGT00390000009595.b.h.a.a	ENSGT00390000011740.e.b	ENSGT00940000161004.d	ENSGT01000000220374
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000053490	ENSOMYG00000074686	ENSOMYG00000073659	ENSOMYG00000053871	ENSOMYG00000004288	ENSOMYG00000053707	ENSOMYG00000060284	ENSOMYG00000052014	ENSOMYG00000004137	ENSOMYG00000068304	ENSOMYG00000004060	ENSOMYG00000077591	ENSOMYG00000058636	nanos3 (ENSOMYG00000056380) ##22	nanos3 (ENSOMYG00000054328) ##22	nanos3 (ENSOMYG00000067935) ##22	ENSOMYG00000005126	ENSOMYG00000058002	CC2D1A (ENSOMYG00000048915)	mri1 (ENSOMYG00000076834)	L10K (ENSOMYG00000058705)	ENSOMYG00000058360	ENSOMYG00000050175	khsrp (ENSOMYG00000005087)	DCAF15 (ENSOMYG00000059287)	ENSOMYG00000048738	rln3b (ENSOMYG00000073855)	ENSOMYG00000076576	ENSOMYG00000049505	ENSOMYG00000073673	ENSOMYG00000077569
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000061951	ENSOMYG00000063631	ENSOMYG00000056562	ENSOMYG00000004023	ENSOMYG00000077741	ENSOMYG00000074940	ENSOMYG00000076398	ENSOMYG00000018593	ENSOMYG00000061713	ENSOMYG00000052790	ENSOMYG00000049612	ENSOMYG00000056741	ENSOMYG00000075563	ENSOMYG00000067018	nanos3 (ENSOMYG00000076039) ##22	nanos3 (ENSOMYG00000067904) ##22	ENSOMYG00000034206	ENSOMYG00000054937	mri1 (ENSOMYG00000065715)	L10K (ENSOMYG00000005223)	ENSOMYG00000076202	ENSOMYG00000053619	ENSOMYG00000068107	ENSOMYG00000072694	khsrp (ENSOMYG00000060752)	DCAF15 (ENSOMYG00000060337)	ENSOMYG00000053627	rln3b (ENSOMYG00000035854)	ENSOMYG00000009981	ENSOMYG00000058288	ENSOMYG00000066790
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000003210.g	ENSGT00390000000707.y.b.c	ENSGT00940000160924.h	ENSGT00940000158070.c	ENSGT00390000012054.b.k	ENSGT00390000008576.w	ENSGT00390000012529.o.a	ENSGT00940000158301.k.a.a	ENSGT00940000159096.k	ENSGT00950000183170.a.mb	ENSGT00440000033589.c.d.a.a	ENSGT00440000033589.c.d.a.b	ENSGT00600000085600.k.b.a	ENSGT00390000018123.a.a.l	ENSGT00940000155938.b.a.f	ENSGT00950000183135.A.b.r.f ##22	ENSGT00940000178947	ENSGT00390000010125.z	ENSGT00390000017730.h.b	ENSGT00940000161299.f.p	ENSGT00940000159483.a.b.e.b	ENSGT00940000158596.b.a	ENSGT00940000159909.m	ENSGT00940000158511	ENSGT01030000234574.A.b.a	ENSGT00940000158960.l.f	ENSGT00940000157672.l	ENSGT00940000160211.l	ENSGT00940000156482.d.e	ENSGT00950000182966.B.a.a	ENSGT00950000182966.B.b.b
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000053452	sdr42e1 (ENSOMYG00000045098)	ENSOMYG00000074522	CNEP1R1 (ENSOMYG00000045101)	heatr3 (ENSOMYG00000045138)	tent4b (ENSOMYG00000045259)	adcy7 (ENSOMYG00000045295)	ENSOMYG00000066122	brd7 (ENSOMYG00000045334)	nkd1 (ENSOMYG00000045343)	ENSOMYG00000045354	CYLD (ENSOMYG00000045433)	ENSOMYG00000058344	ENSOMYG00000069981	sall1a (ENSOMYG00000045975)	ENSOMYG00000045978 ##22	TOX3 (ENSOMYG00000045986)	ENSOMYG00000038731	ENSOMYG00000016984	ENSOMYG00000068495	aktip (ENSOMYG00000020187)	ENSOMYG00000076169	ENSOMYG00000020222	irx3a (ENSOMYG00000020244)	irx5a (ENSOMYG00000020260)	ENSOMYG00000020273	mmp2 (ENSOMYG00000020411)	ENSOMYG00000067036	lpcat2 (ENSOMYG00000021001)	ENSOMYG00000021656	ENSOMYG00000048714
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000154415.lb.a.d	ENSGT00940000160407	ENSGT00390000003210.g	ENSGT00390000000707.y.b.c	ENSGT00940000160924.h	ENSGT00940000158070.c	ENSGT00390000012054.b.k	ENSGT00390000008576.w	ENSGT00390000012529.o.a	ENSGT00940000158301.k.a.a	ENSGT00950000183170.a.mb	ENSGT00440000033589.c.d.a.a	ENSGT00600000085600.k.b.a	ENSGT00390000018123.a.a.l	ENSGT00940000155938.b.a.f	ENSGT00950000183135.A.b.r.f ##22	ENSGT00940000178947	ENSGT00390000010125.z	ENSGT00390000017730.h.b	ENSGT00940000161299.f.p	ENSGT00940000159483.a.b.e.b	ENSGT00940000159909.n.b	ENSGT00940000158511	ENSGT01030000234574.A.b.a.j	ENSGT01030000234574.A.b.a.i	ENSGT00940000158960.k	ENSGT00940000157672.l	ENSGT00940000160211.k	ENSGT00940000156482.d.f	ENSGT00950000182966.B.b.b	ENSGT00940000157187.p
Chinook salmon	MODERN SPECIES	3049																nanos3 (ENSOTSG00005041270) ##22
Coho salmon	MODERN SPECIES	28	gpib (ENSOKIG00005017356)	wtip (ENSOKIG00005017960)	sdr42e1 (ENSOKIG00005018003)	ENSOKIG00005018008	CNEP1R1 (ENSOKIG00005018027)	heatr3 (ENSOKIG00005018102)	tent4b (ENSOKIG00005018153)	adcy7 (ENSOKIG00005018240)	brd7 (ENSOKIG00005018363)	nkd1 (ENSOKIG00005018410)	ENSOKIG00005018428	ENSOKIG00005018440	CYLD (ENSOKIG00005018538)	ENSOKIG00005019789	sall1a (ENSOKIG00005019797)	ENSOKIG00005019805 ##22	ENSOKIG00005019828	ENSOKIG00005019899	ENSOKIG00005020212	aktip (ENSOKIG00005025791)	FTO (ENSOKIG00005025888)	irx3a (ENSOKIG00005025910)	irx5a (ENSOKIG00005025939)	ENSOKIG00005025950	irx6a (ENSOKIG00005025962)	mmp2 (ENSOKIG00005026080)	lpcat2 (ENSOKIG00005028073)	SLC6A2 (ENSOKIG00005028618)	SLC12A4 (ENSOKIG00005031102)	ENSOKIG00005031603	ENSOKIG00005031608
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	8	ENSELUG00000025562	ENSELUG00000033944	ENSELUG00000015607	ENSELUG00000025695	b3gntl1 (ENSELUG00000015697)	METRNL (ENSELUG00000015716)	ENSELUG00000029946	ENSELUG00000027022	ENSELUG00000033305	ENSELUG00000015827	ENSELUG00000025639	ENSELUG00000015473	ENSELUG00000027126	ENSELUG00000026523	CARM1 (ENSELUG00000015993)	nanos3 (ENSELUG00000016082) ##22	CC2D1A (ENSELUG00000016141)	mri1 (ENSELUG00000016174)	zgc:136864 (ENSELUG00000016187)	ENSELUG00000029327	ENSELUG00000016247	khsrp (ENSELUG00000016310)	DCAF15 (ENSELUG00000016361)	RFX1 (ENSELUG00000001108)	rln3b (ENSELUG00000027504)	TNPO2 (ENSELUG00000016542)	NHERF2 (ENSELUG00000016566)	ENSELUG00000016582 ##22	ENSELUG00000016626	ENSELUG00000016602	NTHL1 (ENSELUG00000016661)
Northern pike	MODERN SPECIES	8	ENSELUG00000030465	gprc5bb (ENSELUG00000017298)	ENSELUG00000024737	litaf (ENSELUG00000017282)	ENSELUG00000017248	ENSELUG00000028858	ENSELUG00000028826	ENSELUG00000017204	tekt4 (ENSELUG00000017199)	ENSELUG00000017164	ENSELUG00000017103	TSC2 (ENSELUG00000016788)	NTHL1 (ENSELUG00000016661)	ENSELUG00000016602	ENSELUG00000016626	ENSELUG00000016582 ##22	NHERF2 (ENSELUG00000016566)	TNPO2 (ENSELUG00000016542)	rln3b (ENSELUG00000027504)	RFX1 (ENSELUG00000001108)	DCAF15 (ENSELUG00000016361)	khsrp (ENSELUG00000016310)	ENSELUG00000016247	ENSELUG00000029327	zgc:136864 (ENSELUG00000016187)	mri1 (ENSELUG00000016174)	CC2D1A (ENSELUG00000016141)	nanos3 (ENSELUG00000016082) ##22	CARM1 (ENSELUG00000015993)	ENSELUG00000026523	ENSELUG00000027126
Acanthomorphata	ANCESTRAL SPECIES	338											ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22
Cod	MODERN SPECIES	16	ENSGMOG00000004448	ENSGMOG00000000947	aspscr1 (ENSGMOG00000000923)	ENSGMOG00000026910	ENSGMOG00000001909	ENSGMOG00000022401	MAFG (ENSGMOG00000001264)	SIRT7 (ENSGMOG00000006154)	pcyt2 (ENSGMOG00000006137)	npb (ENSGMOG00000015073)	sgsh (ENSGMOG00000015050)	slc26a11 (ENSGMOG00000015014)	ENSGMOG00000008025	ENSGMOG00000029654	ENSGMOG00000026600	Nanos (ENSGMOG00000034060) ##22	ENSGMOG00000016500	mri1 (ENSGMOG00000002273)	ENSGMOG00000034889	ENSGMOG00000002224	ENSGMOG00000002166	DCAF15 (ENSGMOG00000014339)	ENSGMOG00000014293	rln3b (ENSGMOG00000014285)	ENSGMOG00000014237	ENSGMOG00000035316	ENSGMOG00000010665	NTHL1 (ENSGMOG00000010658)	ENSGMOG00000010614	ENSGMOG00000024694	ENSGMOG00000033613
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005002703	MAFG (ENSMMDG00005002644)	ENSMMDG00005002633	SIRT7 (ENSMMDG00005017443)	pcyt2 (ENSMMDG00005017411)	gnav1 (ENSMMDG00005017406)	npb (ENSMMDG00005017404)	sgsh (ENSMMDG00005017401)	slc26a11 (ENSMMDG00005017363)	ENSMMDG00005017358	ENSMMDG00005017357	ENSMMDG00005017356	ENSMMDG00005017355	ENSMMDG00005017354	ENSMMDG00005017353	nanos3 (ENSMMDG00005017352) ##22	CC2D1A (ENSMMDG00005017343)	mri1 (ENSMMDG00005017336)	zgc:136864 (ENSMMDG00005017334)	ENSMMDG00005017333	ENSMMDG00005017330	khsrp (ENSMMDG00005017285)	DCAF15 (ENSMMDG00005017280)	RFX1 (ENSMMDG00005016937)	rln3b (ENSMMDG00005016933)	TNPO2 (ENSMMDG00005016900)	NHERF2 (ENSMMDG00005016890)	NTHL1 (ENSMMDG00005016888)	TSC2 (ENSMMDG00005015317)	ENSMMDG00005015280	ENSMMDG00005015270
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT01050000244894.a.a.a.b	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Tiger tail seahorse	MODERN SPECIES	382	ENSHCOG00000015097	ENSHCOG00000015090	MAFG (ENSHCOG00000015051)	ENSHCOG00000015027	SIRT7 (ENSHCOG00000015014)	pcyt2 (ENSHCOG00000014983)	gnav1 (ENSHCOG00000014948)	npb (ENSHCOG00000014919)	sgsh (ENSHCOG00000014883)	slc26a11 (ENSHCOG00000014873)	ENSHCOG00000014825	ENSHCOG00000014819	ENSHCOG00000014812	ENSHCOG00000014808	ENSHCOG00000014800	nanos3 (ENSHCOG00000014790) ##22	ENSHCOG00000014716	mri1 (ENSHCOG00000014695)	zgc:136864 (ENSHCOG00000000782)	ENSHCOG00000014673	chrna6 (ENSHCOG00000014652)	chrnb3a (ENSHCOG00000014637)	ENSHCOG00000014622	DNAH6 (ENSHCOG00000014593)	SCLT1 (ENSHCOG00000014455)	zgc:77739 (ENSHCOG00000014444)	ENSHCOG00000014431	pcdh10a (ENSHCOG00000014419)	pcdh18a (ENSHCOG00000014397)	ENSHCOG00000014382	ENSHCOG00000014377
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Ovalentaria	ANCESTRAL SPECIES		ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a.j	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Oryzias	ANCESTRAL SPECIES	28	ENSGT01050000244894.a.a.a.b	ENSGT01050000244894.b.b.d.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080.h	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.c.b.a.b.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Oryzias_a	ANCESTRAL SPECIES	34	ENSGT00940000175759	ENSGT01050000244894.b.b.d.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080.h	ENSGT01070000253775.b.g	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.c.b.a.b.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000027940	MAFG (ENSORLG00000012170)	ENSORLG00000027084	SIRT7 (ENSORLG00000012165)	pcyt2 (ENSORLG00000012151)	gnav1 (ENSORLG00000012122)	ENSORLG00000028541	npb (ENSORLG00000012098)	sgsh (ENSORLG00000012088)	ENSORLG00000028837	ENSORLG00000026002	slc26a11 (ENSORLG00000012068)	ENSORLG00000012039	ENSORLG00000022735	ENSORLG00000012029	nanos3 (ENSORLG00000012018) ##22	CC2D1A (ENSORLG00000012008)	MRI1 (ENSORLG00000011911)	zgc:136864 (ENSORLG00000011899)	ENSORLG00000011895	ENSORLG00000025305	khsrp (ENSORLG00000011882)	DCAF15 (ENSORLG00000011832)	RFX1 (ENSORLG00000011800)	rln3b (ENSORLG00000011777)	ENSORLG00000025394	TNPO2 (ENSORLG00000011763)	TNPO2 (ENSORLG00000022095)	ENSORLG00000011708	NTHL1 (ENSORLG00000011679)	ENSORLG00000023371
Chinese medaka	MODERN SPECIES	4170																nanos3 (ENSOSIG00000013688) ##22
Oryzias_b	ANCESTRAL SPECIES	25	ENSGT00530000069282.B	ENSGT01050000244894.a.a.a.b	ENSGT01050000244894.b.b.d.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000158204.d	ENSGT00390000013080.h	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.c.b.a.b.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Javanese ricefish	MODERN SPECIES		syngr2b (ENSOJAG00000001446)	ENSOJAG00000001453	ENSOJAG00000001467	TMC6 (ENSOJAG00000001484)	aspscr1 (ENSOJAG00000001510)	ENSOJAG00000001539	ENSOJAG00000001550	ENSOJAG00000001583	MAFG (ENSOJAG00000001591)	SIRT7 (ENSOJAG00000001605)	pcyt2 (ENSOJAG00000001619)	npb (ENSOJAG00000001691)	sgsh (ENSOJAG00000001709)	slc26a11 (ENSOJAG00000001781)	ENSOJAG00000001814	nanos3 (ENSOJAG00000001818) ##22	ENSOJAG00000001824	ENSOJAG00000001831	ENSOJAG00000001839	ENSOJAG00000001868	MRI1 (ENSOJAG00000001910)	zgc:136864 (ENSOJAG00000001924)	ENSOJAG00000001931	ENSOJAG00000001948	khsrp (ENSOJAG00000002078)	DCAF15 (ENSOJAG00000002171)	RFX1 (ENSOJAG00000002186)	rln3b (ENSOJAG00000002242)	ENSOJAG00000002252	NHERF2 (ENSOJAG00000002322)	NTHL1 (ENSOJAG00000002343)
Indian medaka	MODERN SPECIES	35	syngr2b (ENSOMEG00000012392)	ENSOMEG00000012410	TMC6 (ENSOMEG00000012507)	aspscr1 (ENSOMEG00000012552)	ENSOMEG00000012567	ENSOMEG00000012599	MAFG (ENSOMEG00000012627)	ENSOMEG00000012670	SIRT7 (ENSOMEG00000012708)	pcyt2 (ENSOMEG00000012760)	npb (ENSOMEG00000012783)	sgsh (ENSOMEG00000012828)	slc26a11 (ENSOMEG00000012886)	ENSOMEG00000012910	ENSOMEG00000012941	nanos3 (ENSOMEG00000000922) ##22	CC2D1A (ENSOMEG00000013087)	mri1 (ENSOMEG00000013120)	zgc:136864 (ENSOMEG00000013133)	ENSOMEG00000013152	ENSOMEG00000013195	khsrp (ENSOMEG00000013233)	DCAF15 (ENSOMEG00000013277)	RFX1 (ENSOMEG00000013316)	rln3b (ENSOMEG00000013338)	ENSOMEG00000013373	TNPO2 (ENSOMEG00000013440)	ENSOMEG00000013466	NTHL1 (ENSOMEG00000013509)	TSC2 (ENSOMEG00000013613)	ENSOMEG00000013652
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Mangrove rivulus	MODERN SPECIES	38	TMC6 (ENSKMAG00000019155)	NOTUM (ENSKMAG00000019123)	aspscr1 (ENSKMAG00000019094)	ENSKMAG00000019081	ENSKMAG00000019045	MAFG (ENSKMAG00000019014)	SIRT7 (ENSKMAG00000018989)	pcyt2 (ENSKMAG00000018932)	gnav1 (ENSKMAG00000018901)	npb (ENSKMAG00000018891)	sgsh (ENSKMAG00000018856)	slc26a11 (ENSKMAG00000018831)	ENSKMAG00000018812	ENSKMAG00000018799	ENSKMAG00000018776	nanos3 (ENSKMAG00000018767) ##22	CC2D1A (ENSKMAG00000018726)	mri1 (ENSKMAG00000018700)	zgc:136864 (ENSKMAG00000018691)	ENSKMAG00000018665	ENSKMAG00000018627	khsrp (ENSKMAG00000018579)	DCAF15 (ENSKMAG00000018543)	RFX1 (ENSKMAG00000018514)	rln3b (ENSKMAG00000018499)	TNPO2 (ENSKMAG00000018430)	NHERF2 (ENSKMAG00000018408)	NTHL1 (ENSKMAG00000018365)	TSC2 (ENSKMAG00000018301)	ENSKMAG00000018176	ENSKMAG00000018141
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b.b	ENSGT00940000164753.b.a	ENSGT00940000158204.d	ENSGT00390000013080.e.a	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
NAME_6	ANCESTRAL SPECIES	96	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b.b	ENSGT00940000164753.b.a	ENSGT00940000158204.d	ENSGT00390000013080.e.a	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.i
Sailfin molly	MODERN SPECIES	1178										npb (ENSPLAG00000011025)	sgsh (ENSPLAG00000010981)	slc26a11 (ENSPLAG00000010935)	ENSPLAG00000010919	ENSPLAG00000010903	ENSPLAG00000010888	nanos3 (ENSPLAG00000010871) ##22	ENSPLAG00000010861	mri1 (ENSPLAG00000010852)	zgc:136864 (ENSPLAG00000010829)	ENSPLAG00000010822	ENSPLAG00000010802	khsrp (ENSPLAG00000010763)	DCAF15 (ENSPLAG00000010739)	RFX1 (ENSPLAG00000010727)	rln3b (ENSPLAG00000010703)	TNPO2 (ENSPLAG00000010687)
Amazon molly	MODERN SPECIES	506	ENSPFOG00000002863	MAFG (ENSPFOG00000002983)	ENSPFOG00000022440	SIRT7 (ENSPFOG00000003047)	pcyt2 (ENSPFOG00000022675)	gnav1 (ENSPFOG00000003322)	npb (ENSPFOG00000020122)	sgsh (ENSPFOG00000003433)	slc26a11 (ENSPFOG00000003811)	ENSPFOG00000024547	ENSPFOG00000021974	gnav1 (ENSPFOG00000021691)	npb (ENSPFOG00000003627)	sgsh (ENSPFOG00000003648)	ENSPFOG00000003528	nanos3 (ENSPFOG00000020123) ##22	ENSPFOG00000004123	mri1 (ENSPFOG00000004311)	zgc:136864 (ENSPFOG00000004398)	ENSPFOG00000004403	ENSPFOG00000004443	khsrp (ENSPFOG00000004577)	DCAF15 (ENSPFOG00000005125)	RFX1 (ENSPFOG00000005148)	TNPO2 (ENSPFOG00000005417)	ENSPFOG00000005908	NTHL1 (ENSPFOG00000005951)	TSC2 (ENSPFOG00000006024)	ENSPFOG00000006675	ENSPFOG00000023385	ENSPFOG00000024098
Guppy	MODERN SPECIES	439	TMC8 (ENSPREG00000000440)	TMC6 (ENSPREG00000000439)	NOTUM (ENSPREG00000000438)	aspscr1 (ENSPREG00000000437)	ENSPREG00000000436	ENSPREG00000000435	MAFG (ENSPREG00000000434)	ENSPREG00000000433	pcyt2 (ENSPREG00000000432)	gnav1 (ENSPREG00000000431)	npb (ENSPREG00000000430)	sgsh (ENSPREG00000000429)	slc26a11 (ENSPREG00000000428)	ENSPREG00000000427	ENSPREG00000000426	nanos3 (ENSPREG00000000425) ##22	ENSPREG00000000424	zgc:136864 (ENSPREG00000000423)	mri1 (ENSPREG00000000422)	ENSPREG00000000421	ENSPREG00000000420	khsrp (ENSPREG00000000419)	DCAF15 (ENSPREG00000000418)	RFX1 (ENSPREG00000000417)	rln3b (ENSPREG00000000416)	TNPO2 (ENSPREG00000000415)	NTHL1 (ENSPREG00000000414)	TSC2 (ENSPREG00000000413)	ENSPREG00000000412	ENSPREG00000000411	si:ch211-202h22.8 (ENSPREG00000000410)
Platyfish	MODERN SPECIES	19	TMC6 (ENSXMAG00000000278)	NOTUM (ENSXMAG00000023668)	aspscr1 (ENSXMAG00000000292)	ENSXMAG00000012965	MAFG (ENSXMAG00000012964)	ENSXMAG00000026314	SIRT7 (ENSXMAG00000012959)	pcyt2 (ENSXMAG00000012951)	gnav1 (ENSXMAG00000023416)	npb (ENSXMAG00000012949)	sgsh (ENSXMAG00000012930)	slc26a11 (ENSXMAG00000012920)	ENSXMAG00000022142	ENSXMAG00000021826	ENSXMAG00000023241	nanos3 (ENSXMAG00000023751) ##22	ENSXMAG00000012904	mri1 (ENSXMAG00000027505)	zgc:136864 (ENSXMAG00000027120)	ENSXMAG00000026840	ENSXMAG00000029368	ENSXMAG00000012893	khsrp (ENSXMAG00000012876)	DCAF15 (ENSXMAG00000012868)	RFX1 (ENSXMAG00000012853)	rln3b (ENSXMAG00000012850)	TNPO2 (ENSXMAG00000012793)	ENSXMAG00000012783	NTHL1 (ENSXMAG00000012778)	TSC2 (ENSXMAG00000012749)	ENSXMAG00000012736
NAME_4	ANCESTRAL SPECIES	28	ENSGT01050000244894.a.a.a.b	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Mummichog	MODERN SPECIES	2328	psmd12 (ENSFHEG00000016488)	helz (ENSFHEG00000016609)	CACNG1 (ENSFHEG00000016614)	CACNG4 (ENSFHEG00000016632)	cacng5a (ENSFHEG00000016651)	prkcaa (ENSFHEG00000016763)	APOH (ENSFHEG00000016773)	APOH (ENSFHEG00000016804)	nol11 (ENSFHEG00000016815)	BPTF (ENSFHEG00000016874)	ENSFHEG00000016880	ENSFHEG00000016921	SMURF2 (ENSFHEG00000017025)	ENSFHEG00000017049	ENSFHEG00000017057	ENSFHEG00000017084 ##22	ENSFHEG00000017109	ENSFHEG00000017124
Sheepshead minnow	MODERN SPECIES	1576										pcyt2 (ENSCVAG00000011883)	gnav1 (ENSCVAG00000011907)	npb (ENSCVAG00000011909)	sgsh (ENSCVAG00000011951)	slc26a11 (ENSCVAG00000011975)	ENSCVAG00000011980	ENSCVAG00000011987 ##22	ENSCVAG00000011998
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a.j	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Pomacentridae	ANCESTRAL SPECIES	20	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.e.a	ENSGT00940000156038.a.a.d.a.i.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a.r	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a.r	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Amphiprion	ANCESTRAL SPECIES		ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a.r	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Clown anemonefish	MODERN SPECIES	1275					npb (ENSAOCG00000009645)	sgsh (ENSAOCG00000002701)	slc26a11 (ENSAOCG00000009713)	ENSAOCG00000009730	ENSAOCG00000009767	ENSAOCG00000009779	ENSAOCG00000009794	ENSAOCG00000009806	ENSAOCG00000009827	ENSAOCG00000009839	ENSAOCG00000009862	nanos3 (ENSAOCG00000009870) ##22	CC2D1A (ENSAOCG00000009895)	mri1 (ENSAOCG00000009931)	zgc:136864 (ENSAOCG00000009948)	ENSAOCG00000009971	ENSAOCG00000010018	khsrp (ENSAOCG00000010049)	DCAF15 (ENSAOCG00000010062)	RFX1 (ENSAOCG00000010080)	rln3b (ENSAOCG00000002481)	TNPO2 (ENSAOCG00000010152)	NHERF2 (ENSAOCG00000010288)	NTHL1 (ENSAOCG00000010339)	TSC2 (ENSAOCG00000010454)	ENSAOCG00000010604	ENSAOCG00000010628
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000014198	ENSAPEG00000014189	ENSAPEG00000014166	MAFG (ENSAPEG00000014143)	ENSAPEG00000014129	SIRT7 (ENSAPEG00000014084)	pcyt2 (ENSAPEG00000014036)	gnav1 (ENSAPEG00000013991)	npb (ENSAPEG00000013970)	sgsh (ENSAPEG00000013894)	slc26a11 (ENSAPEG00000013801)	ENSAPEG00000013787	ENSAPEG00000013771	ENSAPEG00000013757	ENSAPEG00000013741	nanos3 (ENSAPEG00000013733) ##22	CC2D1A (ENSAPEG00000013670)	ENSAPEG00000013610	ENSAPEG00000013584	mri1 (ENSAPEG00000013553)	zgc:136864 (ENSAPEG00000013516)	ENSAPEG00000013491	ENSAPEG00000013438	khsrp (ENSAPEG00000013411)	DCAF15 (ENSAPEG00000013391)	RFX1 (ENSAPEG00000013349)	rln3b (ENSAPEG00000013377)	TNPO2 (ENSAPEG00000013268)	NHERF2 (ENSAPEG00000013156)	NTHL1 (ENSAPEG00000013130)	TSC2 (ENSAPEG00000012998)
Spiny chromis	MODERN SPECIES	26	NOTUM (ENSAPOG00000010235)	aspscr1 (ENSAPOG00000010186)	ENSAPOG00000010174	ENSAPOG00000010152	MAFG (ENSAPOG00000010112)	ENSAPOG00000010085	SIRT7 (ENSAPOG00000010057)	pcyt2 (ENSAPOG00000010006)	gnav1 (ENSAPOG00000009945)	npb (ENSAPOG00000009877)	sgsh (ENSAPOG00000009865)	slc26a11 (ENSAPOG00000000758)	ENSAPOG00000009799	ENSAPOG00000009794	ENSAPOG00000009778	nanos3 (ENSAPOG00000009762) ##22	CC2D1A (ENSAPOG00000009737)	mri1 (ENSAPOG00000009673)	zgc:136864 (ENSAPOG00000009647)	ENSAPOG00000009638	ENSAPOG00000009597	khsrp (ENSAPOG00000009524)	DCAF15 (ENSAPOG00000009405)	RFX1 (ENSAPOG00000009380)	rln3b (ENSAPOG00000009352)	TNPO2 (ENSAPOG00000009339)	ENSAPOG00000009241	NTHL1 (ENSAPOG00000009229)	TSC2 (ENSAPOG00000009130)	ENSAPOG00000008133	ENSAPOG00000007898
Bicolor damselfish	MODERN SPECIES	425	aspscr1 (ENSSPAG00000007861)	ENSSPAG00000007882	ENSSPAG00000007891	MAFG (ENSSPAG00000007915)	ENSSPAG00000007929	SIRT7 (ENSSPAG00000007954)	pcyt2 (ENSSPAG00000007988)	gnav1 (ENSSPAG00000008034)	npb (ENSSPAG00000008042)	sgsh (ENSSPAG00000008059)	slc26a11 (ENSSPAG00000008077)	ENSSPAG00000008128	ENSSPAG00000008135	ENSSPAG00000008149	ENSSPAG00000008164	nanos3 (ENSSPAG00000008183) ##22	CC2D1A (ENSSPAG00000008203)	mri1 (ENSSPAG00000008235)	zgc:136864 (ENSSPAG00000008281)	ENSSPAG00000008256	ENSSPAG00000008297	khsrp (ENSSPAG00000008349)	DCAF15 (ENSSPAG00000008417)	ENSSPAG00000008441	rln3b (ENSSPAG00000008492)	TNPO2 (ENSSPAG00000008511)	NHERF2 (ENSSPAG00000008551)	NTHL1 (ENSSPAG00000008561)	TSC2 (ENSSPAG00000008590)
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Burton s mouthbrooder	MODERN SPECIES	337	ENSHBUG00000019081	ENSHBUG00000019074	ENSHBUG00000019060	MAFG (ENSHBUG00000019029)	ENSHBUG00000019026	SIRT7 (ENSHBUG00000019019)	pcyt2 (ENSHBUG00000018986)	gnav1 (ENSHBUG00000018929)	npb (ENSHBUG00000018889)	sgsh (ENSHBUG00000018877)	slc26a11 (ENSHBUG00000018824)	ENSHBUG00000018807	ENSHBUG00000018798	ENSHBUG00000018759	ENSHBUG00000018742	nanos3 (ENSHBUG00000018730) ##22	ENSHBUG00000018697	mri1 (ENSHBUG00000018620)	zgc:136864 (ENSHBUG00000018596)	ENSHBUG00000000556	ENSHBUG00000018567	khsrp (ENSHBUG00000018543)	DCAF15 (ENSHBUG00000001095)	RFX1 (ENSHBUG00000001083)	rln3b (ENSHBUG00000018339)	TNPO2 (ENSHBUG00000018317)	NHERF2 (ENSHBUG00000018254)	NTHL1 (ENSHBUG00000018223)	TSC2 (ENSHBUG00000018185)	ENSHBUG00000018076	ENSHBUG00000017920
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Eastern happy	MODERN SPECIES	18	NOTUM (ENSACLG00000019776)	aspscr1 (ENSACLG00000019805)	ENSACLG00000019944	ENSACLG00000019960	ENSACLG00000019971	MAFG (ENSACLG00000019998)	ENSACLG00000020013	SIRT7 (ENSACLG00000020038)	pcyt2 (ENSACLG00000020079)	gnav1 (ENSACLG00000020120)	npb (ENSACLG00000020145)	sgsh (ENSACLG00000020155)	slc26a11 (ENSACLG00000020208)	ENSACLG00000020227	ENSACLG00000020319	nanos3 (ENSACLG00000020332) ##22	ENSACLG00000020352	mri1 (ENSACLG00000020412)	zgc:136864 (ENSACLG00000020422)	ENSACLG00000020439	ENSACLG00000020456	khsrp (ENSACLG00000020487)	DCAF15 (ENSACLG00000020575)	RFX1 (ENSACLG00000020623)	rln3b (ENSACLG00000020651)	TNPO2 (ENSACLG00000020672)	NHERF2 (ENSACLG00000020749)	NTHL1 (ENSACLG00000020790)	TSC2 (ENSACLG00000020810)	ENSACLG00000020920	ENSACLG00000021043
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005007964	MAFG (ENSMZEG00005007955)	ENSMZEG00005007948	SIRT7 (ENSMZEG00005007936)	pcyt2 (ENSMZEG00005007912)	gnav1 (ENSMZEG00005007895)	npb (ENSMZEG00005007885)	sgsh (ENSMZEG00005007867)	slc26a11 (ENSMZEG00005007858)	ENSMZEG00005007843	ENSMZEG00005007755	ENSMZEG00005007722	ENSMZEG00005007712	ENSMZEG00005007707	ENSMZEG00005007701	nanos3 (ENSMZEG00005007690) ##22	CC2D1A (ENSMZEG00005007673)	mri1 (ENSMZEG00005007657)	zgc:136864 (ENSMZEG00005007631)	ENSMZEG00005007622	ENSMZEG00005007598	DCAF15 (ENSMZEG00005007530)	RFX1 (ENSMZEG00005007468)	rln3b (ENSMZEG00005007510)	TNPO2 (ENSMZEG00005007408)	NHERF2 (ENSMZEG00005007390)	NTHL1 (ENSMZEG00005007375)	TSC2 (ENSMZEG00005007304)	ENSMZEG00005007255	ENSMZEG00005007208	si:ch211-202h22.9 (ENSMZEG00005007175)
P. nyererei	MODERN SPECIES	360	aspscr1 (ENSPNYG00000002321)	ENSPNYG00000002307	ENSPNYG00000002275	ENSPNYG00000002243	MAFG (ENSPNYG00000002228)	ENSPNYG00000002215	SIRT7 (ENSPNYG00000002181)	pcyt2 (ENSPNYG00000002121)	gnav1 (ENSPNYG00000002087)	npb (ENSPNYG00000002038)	sgsh (ENSPNYG00000002001)	slc26a11 (ENSPNYG00000001883)	ENSPNYG00000001850	ENSPNYG00000001825	ENSPNYG00000001814	nanos3 (ENSPNYG00000001788) ##22	CC2D1A (ENSPNYG00000001590)	mri1 (ENSPNYG00000001542)	zgc:136864 (ENSPNYG00000001528)	ENSPNYG00000001504	ENSPNYG00000001464	khsrp (ENSPNYG00000001374)	DCAF15 (ENSPNYG00000001330)	RFX1 (ENSPNYG00000001317)	rln3b (ENSPNYG00000001301)	TNPO2 (ENSPNYG00000001235)	NHERF2 (ENSPNYG00000001179)	NTHL1 (ENSPNYG00000001147)	TSC2 (ENSPNYG00000001025)	ENSPNYG00000000805	ENSPNYG00000000748
Lyretail cichlid	MODERN SPECIES	308	NOTUM (ENSNBRG00000023299)	aspscr1 (ENSNBRG00000023333)	ENSNBRG00000023356	ENSNBRG00000023461	ENSNBRG00000023635	ENSNBRG00000023646	MAFG (ENSNBRG00000023654)	SIRT7 (ENSNBRG00000023660)	pcyt2 (ENSNBRG00000023667)	gnav1 (ENSNBRG00000023676)	npb (ENSNBRG00000023685)	sgsh (ENSNBRG00000023693)	slc26a11 (ENSNBRG00000023707)	ENSNBRG00000023723	ENSNBRG00000023734	nanos3 (ENSNBRG00000023737) ##22	ENSNBRG00000023750	mri1 (ENSNBRG00000023766)	zgc:136864 (ENSNBRG00000023771)	ENSNBRG00000023777	ENSNBRG00000023782	khsrp (ENSNBRG00000023797)	DCAF15 (ENSNBRG00000023810)	RFX1 (ENSNBRG00000023821)	rln3b (ENSNBRG00000023834)	TNPO2 (ENSNBRG00000023849)	ENSNBRG00000023866	NTHL1 (ENSNBRG00000023880)	TSC2 (ENSNBRG00000023922)	ENSNBRG00000023974	ENSNBRG00000023992
Nile tilapia	MODERN SPECIES	18	ENSONIG00000040220	ENSONIG00000031715	ENSONIG00000018774	MAFG (ENSONIG00000032504)	ENSONIG00000025578	SIRT7 (ENSONIG00000017759)	pcyt2 (ENSONIG00000017756)	npb (ENSONIG00000027286)	gnav1 (ENSONIG00000017752)	sgsh (ENSONIG00000017748)	slc26a11 (ENSONIG00000017745)	ENSONIG00000017739	ENSONIG00000028581	ENSONIG00000039217	ENSONIG00000026626	nos (ENSONIG00000020588) ##22	CC2D1A (ENSONIG00000017736)	mri1 (ENSONIG00000017732)	zgc:136864 (ENSONIG00000043085)	ENSONIG00000041822	ENSONIG00000017723	khsrp (ENSONIG00000017713)	DCAF15 (ENSONIG00000017709)	RFX1 (ENSONIG00000028286)	rln3b (ENSONIG00000017708)	TNPO2 (ENSONIG00000017706)	ENSONIG00000028869	ENSONIG00000016474	METRNL (ENSONIG00000016472)	b3gntl1 (ENSONIG00000016471)	EPN3 (ENSONIG00000016470)
Midas cichlid	MODERN SPECIES	1113	aspscr1 (ENSACIG00000008662)	ENSACIG00000008695	ENSACIG00000008706	ENSACIG00000008721	MAFG (ENSACIG00000008743)	SIRT7 (ENSACIG00000008760)	pcyt2 (ENSACIG00000008829)	gnav1 (ENSACIG00000008859)	npb (ENSACIG00000008888)	sgsh (ENSACIG00000008934)	slc26a11 (ENSACIG00000008967)	ENSACIG00000009044	ENSACIG00000009065	ENSACIG00000009077	ENSACIG00000009089	nanos3 (ENSACIG00000009111) ##22	ENSACIG00000009129	mri1 (ENSACIG00000009199)	zgc:136864 (ENSACIG00000009222)	ENSACIG00000009257	ENSACIG00000009273	khsrp (ENSACIG00000009298)	DCAF15 (ENSACIG00000009425)	RFX1 (ENSACIG00000009456)	rln3b (ENSACIG00000009521)	TNPO2 (ENSACIG00000009586)	ENSACIG00000009640	NTHL1 (ENSACIG00000009673)	TSC2 (ENSACIG00000009718)	ENSACIG00000009849	ENSACIG00000009985
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Ballan wrasse	MODERN SPECIES	662													ENSLBEG00000004760	ENSLBEG00000004804	ENSLBEG00000004837	nanos3 (ENSLBEG00000004936) ##22	CC2D1A (ENSLBEG00000004956)	mri1 (ENSLBEG00000004998)	zgc:136864 (ENSLBEG00000005030)	ENSLBEG00000005056	ENSLBEG00000005125	ENSLBEG00000005167	khsrp (ENSLBEG00000005191)	DCAF15 (ENSLBEG00000005227)	RFX1 (ENSLBEG00000005257)	rln3b (ENSLBEG00000005282)	TNPO2 (ENSLBEG00000005301)	ENSLBEG00000005386	NTHL1 (ENSLBEG00000005413)	TSC2 (ENSLBEG00000005560)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.e.a	ENSGT00940000156038.a.a.d.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Cottioidei	ANCESTRAL SPECIES	3	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Stickleback	MODERN SPECIES	4	TMC8 (ENSGACG00000019054)	TMC6 (ENSGACG00000019048)	NOTUM (ENSGACG00000019047)	aspscr1 (ENSGACG00000019046)	ENSGACG00000019045	ENSGACG00000019043	mafgb (ENSGACG00000019041)	ENSGACG00000019039	SIRT7 (ENSGACG00000019035)	pcyt2 (ENSGACG00000019032)	gnav1 (ENSGACG00000019015)	npb (ENSGACG00000019013)	sgsh (ENSGACG00000019010)	slc26a11 (ENSGACG00000019006)	ENSGACG00000019004	nanos3 (ENSGACG00000019003) ##22	ENSGACG00000019002	CC2D1A (ENSGACG00000018999)	mri1 (ENSGACG00000018995)	zgc:136864 (ENSGACG00000018994)	ENSGACG00000018993	ENSGACG00000018992	khsrp (ENSGACG00000018990)	ENSGACG00000018989	RFX1 (ENSGACG00000018987)	rln3b (ENSGACG00000018985)	TNPO2 (ENSGACG00000018968)	ENSGACG00000018966	NTHL1 (ENSGACG00000018961)	TSC2 (ENSGACG00000018952)	ENSGACG00000018946
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00980000203398	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Pike perch	MODERN SPECIES	8	ENSSLUG00000011837	ENSSLUG00000011839	MAFG (ENSSLUG00000011872)	ENSSLUG00000011877	SIRT7 (ENSSLUG00000011885)	pcyt2 (ENSSLUG00000011895)	gnav1 (ENSSLUG00000011932)	npb (ENSSLUG00000011938)	sgsh (ENSSLUG00000011945)	slc26a11 (ENSSLUG00000011974)	ENSSLUG00000012234	ENSSLUG00000012239	ENSSLUG00000012243	ENSSLUG00000012248	ENSSLUG00000012252	nanos3 (ENSSLUG00000012257) ##22	CC2D1A (ENSSLUG00000012303)	mri1 (ENSSLUG00000012957)	ENSSLUG00000012981	ENSSLUG00000013195	khsrp (ENSSLUG00000013199)	DCAF15 (ENSSLUG00000013203)	RFX1 (ENSSLUG00000013210)	rln3b (ENSSLUG00000013218)	TNPO2 (ENSSLUG00000013231)	ENSSLUG00000013256	NHERF2 (ENSSLUG00000013266)	NTHL1 (ENSSLUG00000013306)	TSC2 (ENSSLUG00000013501)	ENSSLUG00000014303	ENSSLUG00000000103
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Gilthead seabream	MODERN SPECIES		NOTUM (ENSSAUG00010001089)	aspscr1 (ENSSAUG00010001083)	ENSSAUG00010001081	ENSSAUG00010001075	MAFG (ENSSAUG00010001072)	ENSSAUG00010001071	SIRT7 (ENSSAUG00010001049)	pcyt2 (ENSSAUG00010001018)	gnav1 (ENSSAUG00010001012)	npb (ENSSAUG00010001011)	sgsh (ENSSAUG00010001010)	slc26a11 (ENSSAUG00010001004)	ENSSAUG00010001000	ENSSAUG00010000997	ENSSAUG00010000995	nanos3 (ENSSAUG00010000994) ##22	CC2D1A (ENSSAUG00010000990)	mri1 (ENSSAUG00010000989)	zgc:136864 (ENSSAUG00010000988)	ENSSAUG00010000987	ENSSAUG00010000972	khsrp (ENSSAUG00010000961)	DCAF15 (ENSSAUG00010000956)	RFX1 (ENSSAUG00010000722)	rln3b (ENSSAUG00010000707)	NHERF2 (ENSSAUG00010000692)	NTHL1 (ENSSAUG00010000688)	ENSSAUG00010000684	TSC2 (ENSSAUG00010000535)	ENSSAUG00010000455	ENSSAUG00010000443
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Large yellow croaker	MODERN SPECIES	481	cyp26c1 (ENSLCRG00005018099)	ENSLCRG00005018101	AIFM2 (ENSLCRG00005018118)	elovl6l (ENSLCRG00005018120)	ENSLCRG00005018121	nfkb2 (ENSLCRG00005018123)	glud1a (ENSLCRG00005018127)	shld2 (ENSLCRG00005018168)	ENSLCRG00005018171	ENSLCRG00005018173	CUL7 (ENSLCRG00005018184)	ENSLCRG00005018562	ENSLCRG00005018569	ENSLCRG00005018571	ENSLCRG00005018575	nanos3 (ENSLCRG00005018578) ##22	ENSLCRG00005018583	mri1 (ENSLCRG00005018589)	zgc:136864 (ENSLCRG00005018591)	ENSLCRG00005018593	ENSLCRG00005018602	khsrp (ENSLCRG00005018659)	DCAF15 (ENSLCRG00005018661)	RFX1 (ENSLCRG00005018665)	rln3b (ENSLCRG00005018676)	TNPO2 (ENSLCRG00005018678)	ENSLCRG00005018718	NTHL1 (ENSLCRG00005018720)	TSC2 (ENSLCRG00005018730)	ENSLCRG00005018854	ENSLCRG00005018859
Tetraodontidae	ANCESTRAL SPECIES	33	ENSGT01050000244894.a.a.a.b	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00980000203398	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Fugu	MODERN SPECIES	8	ENSTRUG00000012323	ENSTRUG00000012095	MAFG (ENSTRUG00000026437)	ENSTRUG00000026592	SIRT7 (ENSTRUG00000011956)	pcyt2 (ENSTRUG00000011781)	gnav1 (ENSTRUG00000011603)	npb (ENSTRUG00000011590)	sgsh (ENSTRUG00000011472)	slc26a11 (ENSTRUG00000011404)	ENSTRUG00000021974	ENSTRUG00000011378	ENSTRUG00000028310	ENSTRUG00000027444	ENSTRUG00000023370	nanos3 (ENSTRUG00000027071) ##22	ENSTRUG00000019953	ENSTRUG00000011003	mri1 (ENSTRUG00000010929)	c17h19orf53 (ENSTRUG00000025986)	ENSTRUG00000020299	ENSTRUG00000010552	khsrp (ENSTRUG00000026489)	RFX1 (ENSTRUG00000010058)	DCAF15 (ENSTRUG00000010245)	TNPO2 (ENSTRUG00000009453)	ENSTRUG00000024458	NTHL1 (ENSTRUG00000009279)	TSC2 (ENSTRUG00000008958)	ENSTRUG00000030483	ENSTRUG00000007938
Tetraodon	MODERN SPECIES	10	TMC8 (ENSTNIG00000014048)	TMC6 (ENSTNIG00000014049)	NOTUM (ENSTNIG00000014050)	aspscr1 (ENSTNIG00000014051)	ENSTNIG00000014052	ENSTNIG00000014053	MAFG (ENSTNIG00000014054)	SIRT7 (ENSTNIG00000014055)	pcyt2 (ENSTNIG00000014056)	gnav1 (ENSTNIG00000014057)	npb (ENSTNIG00000014058)	sgsh (ENSTNIG00000014059)	slc26a11 (ENSTNIG00000014060)	ENSTNIG00000014061	ENSTNIG00000014062	nanos3 (ENSTNIG00000014063) ##22	CC2D1A (ENSTNIG00000014064)	mri1 (ENSTNIG00000014065)	ENSTNIG00000000780	ENSTNIG00000014066	khsrp (ENSTNIG00000014067)	DCAF15 (ENSTNIG00000014068)	RFX1 (ENSTNIG00000014069)	rln3b (ENSTNIG00000014070)	TNPO2 (ENSTNIG00000014071)	NHERF2 (ENSTNIG00000014072)	NTHL1 (ENSTNIG00000014073)	TSC2 (ENSTNIG00000014074)	ENSTNIG00000014075	ENSTNIG00000014076	si:ch211-202h22.8 (ENSTNIG00000014077)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Carangaria	ANCESTRAL SPECIES		ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00390000007091	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT01050000244894.a.a.a.b	ENSGT01050000244894.b.b.d.a	ENSGT00390000015892.a	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b
Turbot	MODERN SPECIES	20	aspscr1 (ENSSMAG00000005618)	ENSSMAG00000005606	ENSSMAG00000005576	MAFG (ENSSMAG00000028574)	ENSSMAG00000022806	SIRT7 (ENSSMAG00000005491)	pcyt2 (ENSSMAG00000005469)	gnav1 (ENSSMAG00000005458)	npb (ENSSMAG00000005425)	sgsh (ENSSMAG00000005370)	slc26a11 (ENSSMAG00000005312)	ENSSMAG00000036348	ENSSMAG00000032899	ENSSMAG00000031859	ENSSMAG00000024312	nanos3 (ENSSMAG00000037642) ##22	CC2D1A (ENSSMAG00000004649)	MRI1 (ENSSMAG00000004636)	zgc:136864 (ENSSMAG00000029034)	ENSSMAG00000004626	ENSSMAG00000004382	khsrp (ENSSMAG00000004167)	DCAF15 (ENSSMAG00000004136)	ENSSMAG00000004130	rln3b (ENSSMAG00000004103)	ENSSMAG00000004050	ENSSMAG00000004029	ENSSMAG00000004015	ENSSMAG00000003898	ENSSMAG00000003770	si:ch211-202h22.8 (ENSSMAG00000027722)
Tongue sole	MODERN SPECIES	19	TSC2 (ENSCSEG00000011528)	b3gntl1 (ENSCSEG00000011565)	tekt4 (ENSCSEG00000011581)	LOXL4 (ENSCSEG00000007660)	ENSCSEG00000007691	golga7ba (ENSCSEG00000007704)	zfyve27 (ENSCSEG00000007785)	pi4k2a (ENSCSEG00000007832)	exosc1 (ENSCSEG00000007895)	ENSCSEG00000007907	si:ch211-202h22.8 (ENSCSEG00000007917)	ENSCSEG00000007932	zgc:172091 (ENSCSEG00000008002)	slc25a10b (ENSCSEG00000008008)	ENSCSEG00000008027	nanos3 (ENSCSEG00000008032) ##22	crb3b (ENSCSEG00000008038)	slc26a11 (ENSCSEG00000008050)	sgsh (ENSCSEG00000008106)	sgsh (ENSCSEG00000008128)	npb (ENSCSEG00000008163)	SIRT7 (ENSCSEG00000008179)	pcyt2 (ENSCSEG00000008194)	ENSCSEG00000008237	ENSCSEG00000008248	patl1 (ENSCSEG00000008261)	ENSCSEG00000008288	RPS6KB2 (ENSCSEG00000008322)	ENSCSEG00000008336	ENSCSEG00000009670	ENSCSEG00000009703
Carangaria_A	ANCESTRAL SPECIES	24	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012
Greater amberjack	MODERN SPECIES	84	aspscr1 (ENSSDUG00000001678)	ENSSDUG00000001716	ENSSDUG00000001749	MAFG (ENSSDUG00000001779)	SIRT7 (ENSSDUG00000001789)	pcyt2 (ENSSDUG00000001820)	gnav1 (ENSSDUG00000001865)	npb (ENSSDUG00000001901)	sgsh (ENSSDUG00000001936)	slc26a11 (ENSSDUG00000001983)	ENSSDUG00000002038	ENSSDUG00000002044	ENSSDUG00000002055	ENSSDUG00000002066	ENSSDUG00000002094	nanos3 (ENSSDUG00000002131) ##22	CC2D1A (ENSSDUG00000002160)	mri1 (ENSSDUG00000002275)	zgc:136864 (ENSSDUG00000002291)	ENSSDUG00000002326	ENSSDUG00000002348	khsrp (ENSSDUG00000002390)	DCAF15 (ENSSDUG00000002448)	RFX1 (ENSSDUG00000002511)	rln3b (ENSSDUG00000002552)	TNPO2 (ENSSDUG00000002607)	NHERF2 (ENSSDUG00000002671)	ENSSDUG00000002684	NTHL1 (ENSSDUG00000002707)	TSC2 (ENSSDUG00000002733)	ENSSDUG00000002829
Yellowtail amberjack	MODERN SPECIES	3041	aspscr1 (ENSSLDG00000012283)	ENSSLDG00000012314	ENSSLDG00000012331	MAFG (ENSSLDG00000012357)	ENSSLDG00000012375	SIRT7 (ENSSLDG00000012403)	pcyt2 (ENSSLDG00000012438)	gnav1 (ENSSLDG00000012475)	npb (ENSSLDG00000012517)	sgsh (ENSSLDG00000012536)	slc26a11 (ENSSLDG00000012566)	ENSSLDG00000012608	ENSSLDG00000012617	ENSSLDG00000012628	ENSSLDG00000012639	nanos3 (ENSSLDG00000012674) ##22	CC2D1A (ENSSLDG00000012710)	mri1 (ENSSLDG00000012900)	zgc:136864 (ENSSLDG00000012924)	ENSSLDG00000012935	ENSSLDG00000012965	khsrp (ENSSLDG00000012993)	DCAF15 (ENSSLDG00000013026)	RFX1 (ENSSLDG00000013063)	rln3b (ENSSLDG00000013091)	TNPO2 (ENSSLDG00000013107)	NHERF2 (ENSSLDG00000013152)	NTHL1 (ENSSLDG00000013160)	TSC2 (ENSSLDG00000013236)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1645											slc26a11 (ENSLCAG00010016782)	ENSLCAG00010016825	ENSLCAG00010016830	ENSLCAG00010016832	ENSLCAG00010016836	nanos3 (ENSLCAG00010016841) ##22
Barramundi perch	MODERN SPECIES	123	ENSLCAG00010005338	ENSLCAG00010005350	MAFG (ENSLCAG00010005385)	ENSLCAG00010005390	SIRT7 (ENSLCAG00010005400)	pcyt2 (ENSLCAG00010005411)	gnav1 (ENSLCAG00010005435)	npb (ENSLCAG00010005437)	sgsh (ENSLCAG00010005440)	slc26a11 (ENSLCAG00010005458)	ENSLCAG00010005489	ENSLCAG00010005494	ENSLCAG00010005497	ENSLCAG00010005499	ENSLCAG00010005503	nanos3 (ENSLCAG00010005507) ##22	CC2D1A (ENSLCAG00010005511)	mri1 (ENSLCAG00010005517)	zgc:136864 (ENSLCAG00010005524)	ENSLCAG00010005525	ENSLCAG00010005528	khsrp (ENSLCAG00010005531)	DCAF15 (ENSLCAG00010005539)	RFX1 (ENSLCAG00010005546)	rln3b (ENSLCAG00010005555)	TNPO2 (ENSLCAG00010005579)	ENSLCAG00010005697	ENSLCAG00010005699	NTHL1 (ENSLCAG00010005701)	TSC2 (ENSLCAG00010005725)	ENSLCAG00010005790
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.E	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000156853	ENSGT00950000182933.A.a.b	ENSGT00950000183044.a.a.a.b	ENSGT00940000160070.b.c.b	ENSGT00390000004090	ENSGT00940000159703	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.E	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b ##22	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000001498	aspscr1 (ENSBSLG00000001504)	NOTUM (ENSBSLG00000001513)	TMC6 (ENSBSLG00000001526)	TMC8 (ENSBSLG00000001548)	syngr2b (ENSBSLG00000001559)	tk1 (ENSBSLG00000001565)	pcyt2 (ENSBSLG00000001596)	gnav1 (ENSBSLG00000001615)	npb (ENSBSLG00000001629)	sgsh (ENSBSLG00000001638)	slc26a11 (ENSBSLG00000001654)	ENSBSLG00000001707	ENSBSLG00000001785	ENSBSLG00000002134	nanos3 (ENSBSLG00000002157) ##22	CC2D1A (ENSBSLG00000002295)	mri1 (ENSBSLG00000002499)	ENSBSLG00000002542	ENSBSLG00000002645	ENSBSLG00000002654	ENSBSLG00000002718	khsrp (ENSBSLG00000002924)	DCAF15 (ENSBSLG00000002948)	RFX1 (ENSBSLG00000002955)	ENSBSLG00000002997	ENSBSLG00000003578	NTHL1 (ENSBSLG00000003736)	ENSBSLG00000004138	ENSBSLG00000004967	ENSBSLG00000005530
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES		aspscr1 (ENSATEG00000019927)	ENSATEG00000019897	ENSATEG00000019873	MAFG (ENSATEG00000019866)	ENSATEG00000019852	SIRT7 (ENSATEG00000019785)	pcyt2 (ENSATEG00000019734)	gnav1 (ENSATEG00000019693)	npb (ENSATEG00000019653)	sgsh (ENSATEG00000019621)	slc26a11 (ENSATEG00000019534)	ENSATEG00000019521	ENSATEG00000019502	ENSATEG00000026831	ENSATEG00000025501	nanos3 (ENSATEG00000027158) ##22	CC2D1A (ENSATEG00000019431)	mri1 (ENSATEG00000019410)	zgc:136864 (ENSATEG00000025205)	ENSATEG00000019388	ENSATEG00000019353	khsrp (ENSATEG00000019332)	DCAF15 (ENSATEG00000019319)	ENSATEG00000019287	rln3b (ENSATEG00000019231)	ENSATEG00000019171	ENSATEG00000019157	NTHL1 (ENSATEG00000019126)	ENSATEG00000019014	ENSATEG00000018872	ENSATEG00000018855
Climbing perch	MODERN SPECIES	34														ENSATEG00000007013	ENSATEG00000025784	ENSATEG00000027891 ##22	ENSATEG00000007074	ENSATEG00000028685	ENSATEG00000007187	ENSATEG00000007196
Reedfish	MODERN SPECIES	8	NACC1 (ENSECRG00000016939)	TRMT1 (ENSECRG00000016979)	man2b1 (ENSECRG00000017038)	ier2b (ENSECRG00000017080)	ENSECRG00000017230	ENSECRG00000017695	wdr83os (ENSECRG00000017737)	wdr83 (ENSECRG00000017814)	yju2b (ENSECRG00000017845)	gtf2f1 (ENSECRG00000017878)	ENSECRG00000017916	alkbh7 (ENSECRG00000017937)	dhps (ENSECRG00000017948)	ENSECRG00000017971	FBXW9 (ENSECRG00000017989)	NANOS3 (ENSECRG00000018002) ##22	CC2D1A (ENSECRG00000018031)	PODNL1 (ENSECRG00000018134)	DCAF15 (ENSECRG00000018254)	rfx1a (ENSECRG00000018307)	rln3b (ENSECRG00000018369)	ENSECRG00000018392	TNPO2 (ENSECRG00000018514)	ENSECRG00000018738	khsrp (ENSECRG00000018811)	ENSECRG00000019007	ENSECRG00000019032	mri1 (ENSECRG00000019066)	zgc:136864 (ENSECRG00000019080)	ZSWIM4 (ENSECRG00000019119)	ENSECRG00000019184
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000183135.A ##22
Caenorhabditis elegans	MODERN SPECIES	1	unc-104 (WBGene00006831)	sqv-7 (WBGene00005025)	lst-6 (WBGene00016889)	lst-5 (WBGene00016890)	znf-598 (WBGene00016888)	cin-4 (WBGene00022854)	tcer-1 (WBGene00022855)	ZK1127.5 (WBGene00022852)	ZK1127.12 (WBGene00022857)	ZK1127.13 (WBGene00195239)	ZK1127.4 (WBGene00022851)	ZK1127.3 (WBGene00022850)	cth-2 (WBGene00022856)	acs-6 (WBGene00022849)	him-14 (WBGene00001872)	nos-2 (WBGene00003784) ##22	kars-1 (WBGene00002238)	kat-1 (WBGene00002183)	T02G5.7 (WBGene00020166)	T02G5.15 (WBGene00206521)	T02G5.14 (WBGene00020170)	T02G5.3 (WBGene00020163)	mct-5 (WBGene00020168)	mmaa-1 (WBGene00020169)	farl-11 (WBGene00017349)	rpl-33 (WBGene00004447)	F10E7.9 (WBGene00017350)	F10E7.5 (WBGene00017347)	F10E7.6 (WBGene00017348)	cutl-5 (WBGene00017351)	spon-1 (WBGene00006893)