Euarchontoglires ANCESTRAL SPECIES 14 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.b.b ##33 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.b ##33 ENSGT00940000167249 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 Primates ANCESTRAL SPECIES 13 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.b ##33 ENSGT00940000167249 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Haplorrhini ANCESTRAL SPECIES 10 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Simiiformes ANCESTRAL SPECIES 15 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.a.c.a.mb ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Platyrrhini ANCESTRAL SPECIES 9 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234.c #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.b.b ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Cebidae ANCESTRAL SPECIES 11 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234.c #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.a.c.b.a.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Marmoset MODERN SPECIES 18 CLK1 (ENSCJAG00000004319) #7 BZW1 (ENSCJAG00000004267) #8 ENSCJAG00000033419 #9 AOX1 (ENSCJAG00000004230) #10 SGO2 (ENSCJAG00000004216) #11 KCTD18 (ENSCJAG00000031173) #12 ENSCJAG00000085721 #13 SPATS2L (ENSCJAG00000004173) #14 ENSCJAG00000083755 #15 MAIP1 (ENSCJAG00000037075) #16 TYW5 (ENSCJAG00000004155) #17 C2orf69 (ENSCJAG00000004149) #18 ENSCJAG00000044172 #19 ENSCJAG00000078875 #20 ENSCJAG00000082819 #21 SATB2 (ENSCJAG00000004111) #22 ENSCJAG00000055486 #23 ENSCJAG00000085382 #24 PLCL1 (ENSCJAG00000004100) #25 ENSCJAG00000070051 #26 BOLL (ENSCJAG00000004092) #27 MARS2 (ENSCJAG00000022885) #28 ENSCJAG00000077720 #29 RFTN2 (ENSCJAG00000058836) #30 MOB4 (ENSCJAG00000045626) #31 ENSCJAG00000084245 #32 ENSCJAG00000041512 #33 HSPD1 (ENSCJAG00000003990) #34 COQ10B (ENSCJAG00000039085) #35 SF3B1 (ENSCJAG00000003902) #36 ANKRD44 (ENSCJAG00000003803) #37 Cebidae_a ANCESTRAL SPECIES 16 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234.c #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00390000006350.m.a.c.b.a.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367 #35 ENSGT00950000183198.c.a.a.b ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Bolivian squirrel monkey MODERN SPECIES 56 HYCC2 (ENSSBOG00000033197) ENSSBOG00000025751 NIF3L1 (ENSSBOG00000034561) ENSSBOG00000028593 CLK1 (ENSSBOG00000031614) #7 BZW1 (ENSSBOG00000020710) #8 ENSSBOG00000034034 #9 AOX1 (ENSSBOG00000032424) #10 SGO2 (ENSSBOG00000035222) #11 KCTD18 (ENSSBOG00000031520) #12 SPATS2L (ENSSBOG00000031853) #14 MAIP1 (ENSSBOG00000033061) #16 TYW5 (ENSSBOG00000020625) #17 C2orf69 (ENSSBOG00000031239) #18 FTCDNL1 (ENSSBOG00000021980) #19 SATB2 (ENSSBOG00000028702) #22 ENSSBOG00000007950 PLCL1 (ENSSBOG00000033477) #25 BOLL (ENSSBOG00000027161) #27 MARS2 (ENSSBOG00000016226) #28 RFTN2 (ENSSBOG00000031373) #30 MOB4 (ENSSBOG00000023092) #31 ENSSBOG00000024433 ENSSBOG00000027158 ##33 HSPD1 (ENSSBOG00000034003) #34 COQ10B (ENSSBOG00000021591) #35 ENSSBOG00000024424 SF3B1 (ENSSBOG00000020080) #36 ANKRD44 (ENSSBOG00000020670) #37 PGAP1 (ENSSBOG00000019868) C2orf66 (ENSSBOG00000021609) Capuchin MODERN SPECIES 178 FAM126B (ENSCCAG00000029565) ORC2 (ENSCCAG00000000270) NIF3L1 (ENSCCAG00000020100) PPIL3 (ENSCCAG00000019393) CLK1 (ENSCCAG00000021387) #7 BZW1 (ENSCCAG00000012616) #8 ENSCCAG00000028426 #9 AOX1 (ENSCCAG00000025414) #10 SGO2 (ENSCCAG00000032369) #11 KCTD18 (ENSCCAG00000023011) #12 SPATS2L (ENSCCAG00000033886) #14 MAIP1 (ENSCCAG00000012313) #16 TYW5 (ENSCCAG00000030363) #17 C2orf69 (ENSCCAG00000025235) #18 ENSCCAG00000027889 #19 SATB2 (ENSCCAG00000028159) #22 PLCL1 (ENSCCAG00000008545) #25 BOLL (ENSCCAG00000026623) #27 MARS2 (ENSCCAG00000019937) #28 ENSCCAG00000037834 RFTN2 (ENSCCAG00000034642) #30 MOB4 (ENSCCAG00000026299) #31 ENSCCAG00000018271 ##33 ENSCCAG00000028857 #34 Mas night monkey MODERN SPECIES 492 CLK1 (ENSANAG00000027111) #7 BZW1 (ENSANAG00000021489) #8 ENSANAG00000023906 #9 AOX1 (ENSANAG00000025069) #10 SGO2 (ENSANAG00000030373) #11 KCTD18 (ENSANAG00000023292) #12 SPATS2L (ENSANAG00000029380) #14 MAIP1 (ENSANAG00000031625) #16 TYW5 (ENSANAG00000024108) #17 C2orf69 (ENSANAG00000022030) #18 ENSANAG00000023820 #19 SATB2 (ENSANAG00000024206) #22 PLCL1 (ENSANAG00000022909) #25 BOLL (ENSANAG00000031449) #27 ENSANAG00000027174 Catarrhini ANCESTRAL SPECIES 16 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Hominoidea ANCESTRAL SPECIES 15 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb.a.a ##33 ENSGT00390000005727.a.b.a.b.c.b.a ##34 ENSGT00390000006350.m.a.c.a.mb.b ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Hominidae ANCESTRAL SPECIES 17 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb.a.a ##33 ENSGT00390000005727.a.b.a.b.c.b.a ##34 ENSGT00390000006350.m.a.c.a.mb.b ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Homo/Pan/Gorilla group ANCESTRAL SPECIES 14 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb.a.a ##33 ENSGT00390000006350.m.a.c.a.mb.b ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Gorilla MODERN SPECIES 15 HYCC2 (ENSGGOG00000039554) ORC2 (ENSGGOG00000014070) NIF3L1 (ENSGGOG00000014060) PPIL3 (ENSGGOG00000022268) CLK1 (ENSGGOG00000016192) #7 BZW1 (ENSGGOG00000016296) #8 AOX1 (ENSGGOG00000006140) #10 SGO2 (ENSGGOG00000038921) #11 KCTD18 (ENSGGOG00000014079) #12 SPATS2L (ENSGGOG00000005917) #14 MAIP1 (ENSGGOG00000005661) #16 TYW5 (ENSGGOG00000041719) #17 C2orf69 (ENSGGOG00000005649) #18 FTCDNL1 (ENSGGOG00000040488) #19 ENSGGOG00000044011 SATB2 (ENSGGOG00000014123) #22 PLCL1 (ENSGGOG00000001959) #25 BOLL (ENSGGOG00000013594) #27 MARS2 (ENSGGOG00000034895) #28 RFTN2 (ENSGGOG00000009318) #30 MOB4 (ENSGGOG00000036779) #31 HSPE1 (ENSGGOG00000027944) ##33 HSPD1 (ENSGGOG00000008267) #34 COQ10B (ENSGGOG00000039158) #35 SF3B1 (ENSGGOG00000009264) #36 ENSGGOG00000038007 ANKRD44 (ENSGGOG00000014558) #37 PGAP1 (ENSGGOG00000001785) C2orf66 (ENSGGOG00000038009) GTF3C3 (ENSGGOG00000011787) CCDC150 (ENSGGOG00000010004) Homo/Pan group ANCESTRAL SPECIES 13 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb.a.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Human MODERN SPECIES 11 NDUFB3 (ENSG00000119013) HYCC2 (ENSG00000155744) ORC2 (ENSG00000115942) NIF3L1 (ENSG00000196290) PPIL3 (ENSG00000240344) CLK1 (ENSG00000013441) #7 BZW1 (ENSG00000082153) #8 AOX1 (ENSG00000138356) #10 SGO2 (ENSG00000163535) #11 KCTD18 (ENSG00000155729) #12 SPATS2L (ENSG00000196141) #14 MAIP1 (ENSG00000162972) #16 TYW5 (ENSG00000162971) #17 C2orf69 (ENSG00000178074) #18 FTCDNL1 (ENSG00000226124) #19 SATB2 (ENSG00000119042) #22 PLCL1 (ENSG00000115896) #25 BOLL (ENSG00000152430) #27 MARS2 (ENSG00000247626) #28 RFTN2 (ENSG00000162944) #30 MOB4 (ENSG00000115540) #31 HSPE1-MOB4 (ENSG00000270757) HSPE1 (ENSG00000115541) ##33 HSPD1 (ENSG00000144381) #34 COQ10B (ENSG00000115520) #35 SF3B1 (ENSG00000115524) #36 ANKRD44 (ENSG00000065413) #37 PGAP1 (ENSG00000197121) C2orf66 (ENSG00000187944) GTF3C3 (ENSG00000119041) CCDC150 (ENSG00000144395) Pan ANCESTRAL SPECIES 12 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb.a.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Chimpanzee MODERN SPECIES 15 ORC2 (ENSPTRG00000012795) NIF3L1 (ENSPTRG00000012794) PPIL3 (ENSPTRG00000012793) CLK1 (ENSPTRG00000012792) #7 BZW1 (ENSPTRG00000012791) #8 ENSPTRG00000044647 #9 AOX1 (ENSPTRG00000012790) #10 SGO2 (ENSPTRG00000022953) #11 KCTD18 (ENSPTRG00000012787) #12 SPATS2L (ENSPTRG00000012785) #14 MAIP1 (ENSPTRG00000012784) #16 TYW5 (ENSPTRG00000012783) #17 C2orf69 (ENSPTRG00000012782) #18 FTCDNL1 (ENSPTRG00000047502) #19 ENSPTRG00000050460 SATB2 (ENSPTRG00000012779) #22 PLCL1 (ENSPTRG00000012778) #25 BOLL (ENSPTRG00000012777) #27 MARS2 (ENSPTRG00000047853) #28 RFTN2 (ENSPTRG00000012776) #30 MOB4 (ENSPTRG00000012775) #31 HSPE1 (ENSPTRG00000012774) ##33 HSPD1 (ENSPTRG00000044665) #34 COQ10B (ENSPTRG00000012772) #35 SF3B1 (ENSPTRG00000012771) #36 ENSPTRG00000049270 ANKRD44 (ENSPTRG00000012770) #37 PGAP1 (ENSPTRG00000012769) C2BH2orf66 (ENSPTRG00000012768) GTF3C3 (ENSPTRG00000012767) CCDC150 (ENSPTRG00000012765) Bonobo MODERN SPECIES 15 ORC2 (ENSPPAG00000030211) NIF3L1 (ENSPPAG00000043491) PPIL3 (ENSPPAG00000039183) CLK1 (ENSPPAG00000036957) #7 BZW1 (ENSPPAG00000027971) #8 ENSPPAG00000030893 #9 AOX1 (ENSPPAG00000000241) #10 SGO2 (ENSPPAG00000000061) #11 KCTD18 (ENSPPAG00000038865) #12 SPATS2L (ENSPPAG00000036160) #14 MAIP1 (ENSPPAG00000026692) #16 TYW5 (ENSPPAG00000027150) #17 C2orf69 (ENSPPAG00000035529) #18 FTCDNL1 (ENSPPAG00000020283) #19 ENSPPAG00000039843 SATB2 (ENSPPAG00000044026) #22 PLCL1 (ENSPPAG00000042453) #25 BOLL (ENSPPAG00000033757) #27 MARS2 (ENSPPAG00000007220) #28 RFTN2 (ENSPPAG00000026815) #30 MOB4 (ENSPPAG00000044023) #31 ENSPPAG00000023895 ##33 HSPD1 (ENSPPAG00000038858) #34 COQ10B (ENSPPAG00000010452) #35 SF3B1 (ENSPPAG00000035007) #36 ENSPPAG00000043776 ENSPPAG00000042224 ANKRD44 (ENSPPAG00000033556) #37 PGAP1 (ENSPPAG00000039254) C2orf66 (ENSPPAG00000029492) GTF3C3 (ENSPPAG00000002745) Orangutan MODERN SPECIES 15 NDUFB3 (ENSPPYG00000013065) HYCC2 (ENSPPYG00000029836) ORC2 (ENSPPYG00000013064) NIF3L1 (ENSPPYG00000013063) ENSPPYG00000013062 CLK1 (ENSPPYG00000013061) #7 BZW1 (ENSPPYG00000035986) #8 AOX1 (ENSPPYG00000013058) #10 SGO2 (ENSPPYG00000013057) #11 KCTD18 (ENSPPYG00000030650) #12 SPATS2L (ENSPPYG00000013055) #14 MAIP1 (ENSPPYG00000035692) #16 TYW5 (ENSPPYG00000033416) #17 C2orf69 (ENSPPYG00000013054) #18 FTCDNL1 (ENSPPYG00000033061) #19 SATB2 (ENSPPYG00000013052) #22 PLCL1 (ENSPPYG00000039108) #25 BOLL (ENSPPYG00000037688) #27 MARS2 (ENSPPYG00000013049) #28 ENSPPYG00000041557 RFTN2 (ENSPPYG00000013048) #30 MOB4 (ENSPPYG00000013047) #31 HSPE1 (ENSPPYG00000025876) ##33 HSPD1 (ENSPPYG00000013046) ##34 COQ10B (ENSPPYG00000039065) #35 SF3B1 (ENSPPYG00000013044) #36 ANKRD44 (ENSPPYG00000013043) #37 PGAP1 (ENSPPYG00000013042) C2orf66 (ENSPPYG00000037735) GTF3C3 (ENSPPYG00000013040) CCDC150 (ENSPPYG00000013039) Gibbon MODERN SPECIES 14 HYCC2 (ENSNLEG00000006941) ORC2 (ENSNLEG00000006938) NIF3L1 (ENSNLEG00000006935) PPIL3 (ENSNLEG00000034236) CLK1 (ENSNLEG00000032526) #7 BZW1 (ENSNLEG00000006929) #8 ENSNLEG00000029066 #9 AOX1 (ENSNLEG00000006920) #10 SGO2 (ENSNLEG00000006913) #11 KCTD18 (ENSNLEG00000006912) #12 SPATS2L (ENSNLEG00000006905) #14 MAIP1 (ENSNLEG00000029234) #16 TYW5 (ENSNLEG00000031551) #17 C2orf69 (ENSNLEG00000031645) #18 FTCDNL1 (ENSNLEG00000029410) #19 SATB2 (ENSNLEG00000006893) #22 PLCL1 (ENSNLEG00000006890) #25 BOLL (ENSNLEG00000006885) #27 MARS2 (ENSNLEG00000018752) #28 RFTN2 (ENSNLEG00000006883) #30 MOB4 (ENSNLEG00000006881) #31 ENSNLEG00000030370 ##33 ENSNLEG00000006874 ##34 ENSNLEG00000029205 COQ10B (ENSNLEG00000006871) #35 SF3B1 (ENSNLEG00000006861) #36 ANKRD44 (ENSNLEG00000006855) #37 PGAP1 (ENSNLEG00000006849) C2orf66 (ENSNLEG00000006848) GTF3C3 (ENSNLEG00000006837) ENSNLEG00000006833 Cercopithecidae ANCESTRAL SPECIES 13 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00950000183743 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b ##33 ENSGT00390000006350.m.a.c.a.mb ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 Cercopithecinae ANCESTRAL SPECIES 11 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00950000183743 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 Vervet Monkey MODERN SPECIES 1 HYCC2 (ENSCSAG00000010815) ORC2 (ENSCSAG00000010834) NIF3L1 (ENSCSAG00000010842) PPIL3 (ENSCSAG00000010852) CLK1 (ENSCSAG00000010924) #7 BZW1 (ENSCSAG00000010957) #8 ENSCSAG00000011187 #9 AOX1 (ENSCSAG00000011276) #10 SGO2 (ENSCSAG00000011303) #11 KCTD18 (ENSCSAG00000011318) #12 SPATS2L (ENSCSAG00000011326) #14 MAIP1 (ENSCSAG00000011334) #16 TYW5 (ENSCSAG00000011351) #17 C2orf69 (ENSCSAG00000011358) #18 FTCDNL1 (ENSCSAG00000011372) #19 SATB2 (ENSCSAG00000011380) #22 PLCL1 (ENSCSAG00000011391) #25 BOLL (ENSCSAG00000011399) #27 MARS2 (ENSCSAG00000018765) #28 RFTN2 (ENSCSAG00000011411) #30 MOB4 (ENSCSAG00000011421) #31 ENSCSAG00000011427 ##33 HSPD1 (ENSCSAG00000011463) #34 COQ10B (ENSCSAG00000011483) #35 SF3B1 (ENSCSAG00000011505) #36 ENSCSAG00000011517 ANKRD44 (ENSCSAG00000011536) #37 PGAP1 (ENSCSAG00000011561) C2orf66 (ENSCSAG00000011573) GTF3C3 (ENSCSAG00000011582) CCDC150 (ENSCSAG00000011637) Cercopithecinae_a ANCESTRAL SPECIES 16 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00950000183743 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 Macaca ANCESTRAL SPECIES 15 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 Pig-tailed macaque MODERN SPECIES 409 NIF3L1 (ENSMNEG00000040987) PPIL3 (ENSMNEG00000032202) CLK1 (ENSMNEG00000031266) #7 BZW1 (ENSMNEG00000043638) #8 ENSMNEG00000045434 #9 ENSMNEG00000034841 ##9 AOX1 (ENSMNEG00000024714) #10 SGO2 (ENSMNEG00000035682) #11 KCTD18 (ENSMNEG00000038609) #12 SPATS2L (ENSMNEG00000016309) #14 MAIP1 (ENSMNEG00000028494) #16 TYW5 (ENSMNEG00000030303) #17 C2orf69 (ENSMNEG00000035266) #18 FTCDNL1 (ENSMNEG00000037918) #19 ENSMNEG00000040066 SATB2 (ENSMNEG00000043012) #22 PLCL1 (ENSMNEG00000019208) #25 BOLL (ENSMNEG00000033015) #27 MARS2 (ENSMNEG00000019593) #28 RFTN2 (ENSMNEG00000033769) #30 ENSMNEG00000033689 MOB4 (ENSMNEG00000033188) #31 ENSMNEG00000039279 ##33 ENSMNEG00000043358 COQ10B (ENSMNEG00000032409) #35 SF3B1 (ENSMNEG00000042333) #36 ENSMNEG00000036998 ANKRD44 (ENSMNEG00000043273) #37 ENSMNEG00000045145 PGAP1 (ENSMNEG00000033082) C2orf66 (ENSMNEG00000038376) Macaca_a ANCESTRAL SPECIES 17 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a.e #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 Crab-eating macaque MODERN SPECIES 3 HYCC2 (ENSMFAG00000032144) ORC2 (ENSMFAG00000040620) NIF3L1 (ENSMFAG00000003012) PPIL3 (ENSMFAG00000038708) CLK1 (ENSMFAG00000030719) #7 BZW1 (ENSMFAG00000020809) #8 ENSMFAG00000034555 #9 AOX1 (ENSMFAG00000036889) #10 SGO2 (ENSMFAG00000041855) #11 KCTD18 (ENSMFAG00000037300) #12 SPATS2L (ENSMFAG00000003450) #14 MAIP1 (ENSMFAG00000045074) #16 TYW5 (ENSMFAG00000004016) #17 C2orf69 (ENSMFAG00000032268) #18 ENSMFAG00000038094 #19 SATB2 (ENSMFAG00000035983) #22 PLCL1 (ENSMFAG00000038838) #25 BOLL (ENSMFAG00000030962) #27 MARS2 (ENSMFAG00000012275) #28 ENSMFAG00000003051 RFTN2 (ENSMFAG00000003082) #30 ENSMFAG00000035530 #31 ENSMFAG00000045023 ##33 ENSMFAG00000033000 #34 COQ10B (ENSMFAG00000017910) #35 ENSMFAG00000045829 SF3B1 (ENSMFAG00000036680) #36 ENSMFAG00000057968 ##20 ENSMFAG00000057322 ##21 ANKRD44 (ENSMFAG00000032694) #37 PGAP1 (ENSMFAG00000029122) Rhesus MODERN SPECIES 3 ORC2 (ENSMMUG00000014460) NIF3L1 (ENSMMUG00000006639) PPIL3 (ENSMMUG00000006638) CLK1 (ENSMMUG00000006640) #7 BZW1 (ENSMMUG00000022202) #8 AOX2 (ENSMMUG00000005835) #9 AOX4 (ENSMMUG00000047974) ##9 AOX1 (ENSMMUG00000021931) #10 SGO2 (ENSMMUG00000052913) #11 KCTD18 (ENSMMUG00000008102) #12 SPATS2L (ENSMMUG00000008101) #14 MAIP1 (ENSMMUG00000023168) #16 TYW5 (ENSMMUG00000023167) #17 C12H2orf69 (ENSMMUG00000041535) #18 FTCDNL1 (ENSMMUG00000031310) #19 SATB2 (ENSMMUG00000046254) #22 ENSMMUG00000059853 ##23 PLCL1 (ENSMMUG00000012822) #25 BOLL (ENSMMUG00000023811) #27 MARS2 (ENSMMUG00000023810) #28 RFTN2 (ENSMMUG00000023809) #30 HSPE1 (ENSMMUG00000016547) ##31 HSPD1 (ENSMMUG00000010489) #34 COQ10B (ENSMMUG00000056418) #35 ENSMMUG00000058328 SF3B1 (ENSMMUG00000022430) #36 ANKRD44 (ENSMMUG00000022425) #37 PGAP1 (ENSMMUG00000043369) C2H2orf66 (ENSMMUG00000054516) GTF3C3 (ENSMMUG00000008643) CCDC150 (ENSMMUG00000015970) Cercopithecinae_b ANCESTRAL SPECIES 10 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00950000183743 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 Olive baboon MODERN SPECIES 1 ORC2 (ENSPANG00000034347) NIF3L1 (ENSPANG00000025493) ENSPANG00000009683 CLK1 (ENSPANG00000015580) #7 BZW1 (ENSPANG00000016459) #8 AOX2 (ENSPANG00000016460) #9 AOX4 (ENSPANG00000024540) ##9 AOX1 (ENSPANG00000015933) #10 SGO2 (ENSPANG00000021922) #11 KCTD18 (ENSPANG00000021439) #12 SPATS2L (ENSPANG00000008482) #14 TYW5 (ENSPANG00000009235) #17 C2orf69 (ENSPANG00000040521) #18 ENSPANG00000044612 #19 ENSPANG00000031615 #19 SATB2 (ENSPANG00000011212) #22 ENSPANG00000050725 PLCL1 (ENSPANG00000000848) #25 BOLL (ENSPANG00000009570) #27 ENSPANG00000042310 ##23 MARS2 (ENSPANG00000016544) #28 RFTN2 (ENSPANG00000009899) #30 MOB4 (ENSPANG00000016215) #31 ENSPANG00000046137 ##33 ENSPANG00000029555 #34 COQ10B (ENSPANG00000006879) #35 ENSPANG00000037062 SF3B1 (ENSPANG00000013417) #36 ENSPANG00000016748 ENSPANG00000037191 ##20 ENSPANG00000048684 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00950000183743 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.b.a.b.a ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 Drill MODERN SPECIES 457 PPIL3 (ENSMLEG00000039054) CLK1 (ENSMLEG00000029735) #7 BZW1 (ENSMLEG00000018894) #8 ENSMLEG00000016360 #9 ENSMLEG00000013006 ##9 AOX1 (ENSMLEG00000039204) #10 SGO2 (ENSMLEG00000039520) #11 KCTD18 (ENSMLEG00000042319) #12 SPATS2L (ENSMLEG00000037145) #14 ENSMLEG00000036074 MAIP1 (ENSMLEG00000041626) #16 TYW5 (ENSMLEG00000038351) #17 C2orf69 (ENSMLEG00000015699) #18 FTCDNL1 (ENSMLEG00000042066) #19 ENSMLEG00000042892 SATB2 (ENSMLEG00000037435) #22 PLCL1 (ENSMLEG00000042517) #25 Sooty mangabey MODERN SPECIES 570 NIF3L1 (ENSCATG00000030966) PPIL3 (ENSCATG00000031187) CLK1 (ENSCATG00000030802) #7 BZW1 (ENSCATG00000032512) #8 ENSCATG00000019918 #9 ENSCATG00000042053 ##9 AOX1 (ENSCATG00000033826) #10 SGO2 (ENSCATG00000027226) #11 KCTD18 (ENSCATG00000044706) #12 SPATS2L (ENSCATG00000008807) #14 MAIP1 (ENSCATG00000036858) #16 TYW5 (ENSCATG00000033078) #17 C2orf69 (ENSCATG00000031233) #18 FTCDNL1 (ENSCATG00000018934) #19 ENSCATG00000044312 SATB2 (ENSCATG00000017161) #22 PLCL1 (ENSCATG00000014153) #25 BOLL (ENSCATG00000004430) #27 MARS2 (ENSCATG00000001827) #28 GLUD2 (ENSCATG00000044639) RFTN2 (ENSCATG00000031580) #30 MOB4 (ENSCATG00000002964) #31 ENSCATG00000022859 ##33 HSPD1 (ENSCATG00000044175) #34 COQ10B (ENSCATG00000031857) #35 ENSCATG00000031238 SF3B1 (ENSCATG00000035735) #36 ENSCATG00000040754 ENSCATG00000039142 ANKRD44 (ENSCATG00000034086) #37 PGAP1 (ENSCATG00000041899) Rhinopithecus ANCESTRAL SPECIES 83 ENSGT00940000163579 ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00950000183743 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000000950.c.b.d.b ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00390000000854.c.b.k.a.a.b ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a.a #31 ENSGT00390000006350.m.a.c.a.mb ##33 ENSGT00390000005727.a.b.a.b.c.a.a #34 ENSGT00940000155367.w #35 ENSGT00390000018393 #36 ENSGT00940000153941.a.a.h ENSGT00940000157455.i.b ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 Black snub-nosed monkey MODERN SPECIES 1955 MAIP1 (ENSRBIG00000010133) #16 TYW5 (ENSRBIG00000039190) #17 C2orf69 (ENSRBIG00000038270) #18 ENSRBIG00000040998 #19 SATB2 (ENSRBIG00000026956) #22 PLCL1 (ENSRBIG00000030591) #25 Golden snub-nosed monkey MODERN SPECIES 676 ENSRROG00000029517 CLK1 (ENSRROG00000035273) #7 BZW1 (ENSRROG00000044305) #8 ENSRROG00000043595 #9 ENSRROG00000034026 ##9 AOX1 (ENSRROG00000043118) #10 SGO2 (ENSRROG00000037302) #11 KCTD18 (ENSRROG00000043788) #12 SPATS2L (ENSRROG00000041208) #14 ENSRROG00000043858 ENSRROG00000040812 #16 TYW5 (ENSRROG00000033012) #17 C2orf69 (ENSRROG00000028208) #18 FTCDNL1 (ENSRROG00000042811) #19 ENSRROG00000032256 SATB2 (ENSRROG00000044735) #22 Tarsier MODERN SPECIES 4981 SATB2 (ENSTSYG00000002539) #22 LYG2 (ENSTSYG00000028650) ENSTSYG00000029768 TXNDC9 (ENSTSYG00000033216) EIF5B (ENSTSYG00000011850) REV1 (ENSTSYG00000011917) AFF3 (ENSTSYG00000029683) Strepsirrhini ANCESTRAL SPECIES 10 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00940000167249 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Bushbaby MODERN SPECIES 128 HYCC2 (ENSOGAG00000012336) ORC2 (ENSOGAG00000012329) NIF3L1 (ENSOGAG00000025311) PPIL3 (ENSOGAG00000007087) CLK1 (ENSOGAG00000012328) #7 BZW1 (ENSOGAG00000012326) #8 AOX2 (ENSOGAG00000025249) #9 AOX4 (ENSOGAG00000030158) ##9 AOX1 (ENSOGAG00000006066) #10 SGO2 (ENSOGAG00000006064) #11 KCTD18 (ENSOGAG00000012335) #12 SPATS2L (ENSOGAG00000012331) #14 MAIP1 (ENSOGAG00000006965) #16 C2orf69 (ENSOGAG00000028317) #18 ENSOGAG00000027028 #19 SATB2 (ENSOGAG00000006949) #22 Lemuriformes ANCESTRAL SPECIES 5 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.b ##31 ENSGT00390000006350.m.a.c.b.a.b ##33 ENSGT01050000244956.b.c.a #31 ENSGT00940000167249 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 Mouse lemur MODERN SPECIES 30 ENSMICG00000003372 PPIL3 (ENSMICG00000003367) CLK1 (ENSMICG00000003361) #7 BZW1 (ENSMICG00000003355) #8 ENSMICG00000033651 #9 ENSMICG00000027664 ##9 AOX1 (ENSMICG00000005718) #10 SGO2 (ENSMICG00000033463) #11 ENSMICG00000003963 #12 SPATS2L (ENSMICG00000003956) #14 MAIP1 (ENSMICG00000044985) #16 TYW5 (ENSMICG00000046098) #17 C2orf69 (ENSMICG00000035511) #18 ENSMICG00000026608 #19 ENSMICG00000037134 SATB2 (ENSMICG00000009378) #22 PLCL1 (ENSMICG00000011854) #25 BOLL (ENSMICG00000011845) #27 RFTN2 (ENSMICG00000028117) #30 ENSMICG00000037985 ##31 HSPD1 (ENSMICG00000028600) #34 HSPE1 (ENSMICG00000046768) ##33 COQ10B (ENSMICG00000013910) #35 SF3B1 (ENSMICG00000013879) #36 ANKRD44 (ENSMICG00000013853) #37 PGAP1 (ENSMICG00000013824) C2orf66 (ENSMICG00000043136) GTF3C3 (ENSMICG00000013800) CCDC150 (ENSMICG00000013761) HECW2 (ENSMICG00000013727) STK17B (ENSMICG00000013716) Lemuriformes_a ANCESTRAL SPECIES 15 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.c.a #31 ENSGT00940000167249 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Coquerels sifaka MODERN SPECIES 94 NDUFB3 (ENSPCOG00000020529) HYCC2 (ENSPCOG00000014611) ORC2 (ENSPCOG00000021783) NIF3L1 (ENSPCOG00000018022) PPIL3 (ENSPCOG00000028235) CLK1 (ENSPCOG00000018180) #7 ENSPCOG00000015831 #8 ENSPCOG00000015215 #9 ENSPCOG00000027597 ##9 AOX1 (ENSPCOG00000021840) #10 ENSPCOG00000024135 #11 SPATS2L (ENSPCOG00000015945) #14 MAIP1 (ENSPCOG00000008943) #16 C2orf69 (ENSPCOG00000006950) #18 FTCDNL1 (ENSPCOG00000019867) #19 ENSPCOG00000014379 #22 Greater bamboo lemur MODERN SPECIES 225 MAK (ENSPSMG00000025468) TMEM14C (ENSPSMG00000025455) C6orf52 (ENSPSMG00000025442) ENSPSMG00000025433 GCNT2 (ENSPSMG00000025432) HNRNPA1L3 (ENSPSMG00000025423) AOX1 (ENSPSMG00000025393) #10 SGO2 (ENSPSMG00000025322) #11 KCTD18 (ENSPSMG00000025316) #12 SPATS2L (ENSPSMG00000025292) #14 MAIP1 (ENSPSMG00000025245) #16 TYW5 (ENSPSMG00000025236) #17 C2orf69 (ENSPSMG00000025231) #18 FTCDNL1 (ENSPSMG00000025226) #19 SATB2 (ENSPSMG00000025213) #22 PLCL1 (ENSPSMG00000025179) #25 BOLL (ENSPSMG00000025166) #27 MARS2 (ENSPSMG00000025148) #28 RFTN2 (ENSPSMG00000025142) #30 ENSPSMG00000025134 ##31 ENSPSMG00000025114 ##33 ENSPSMG00000025102 #34 COQ10B (ENSPSMG00000025082) #35 SF3B1 (ENSPSMG00000025061) #36 ANKRD44 (ENSPSMG00000025023) #37 PGAP1 (ENSPSMG00000024985) GTF3C3 (ENSPSMG00000024937) CCDC150 (ENSPSMG00000024921) HECW2 (ENSPSMG00000024894) STK17B (ENSPSMG00000024880) Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Tree shrew MODERN SPECIES 795 SATB2 (ENSTBEG00000002443) #22 Glires ANCESTRAL SPECIES 14 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Lagomorpha ANCESTRAL SPECIES 13 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Rabbit MODERN SPECIES 18 PPIL3 (ENSOCUG00000010661) CLK1 (ENSOCUG00000010653) #7 ENSOCUG00000010647 #8 ENSOCUG00000026480 #9 ENSOCUG00000024593 ##9 ENSOCUG00000035654 ##9 AOX1 (ENSOCUG00000013971) #10 ENSOCUG00000000547 #11 ENSOCUG00000037416 #11 KCTD18 (ENSOCUG00000011556) #12 SPATS2L (ENSOCUG00000011549) #14 ENSOCUG00000017946 #16 ENSOCUG00000035705 #17 ENSOCUG00000016464 #17 C2orf69 (ENSOCUG00000016473) #18 SATB2 (ENSOCUG00000009700) #22 PLCL1 (ENSOCUG00000013978) #25 BOLL (ENSOCUG00000013979) #27 MARS2 (ENSOCUG00000017798) #28 RFTN2 (ENSOCUG00000003993) #30 ENSOCUG00000005712 ##31 HSPE1 (ENSOCUG00000010360) ##33 HSPD1 (ENSOCUG00000012736) #34 COQ10B (ENSOCUG00000012735) #35 ENSOCUG00000000205 ENSOCUG00000029492 #36 ENSOCUG00000012722 #36 ANKRD44 (ENSOCUG00000009183) #37 PGAP1 (ENSOCUG00000002192) C2orf66 (ENSOCUG00000028999) GTF3C3 (ENSOCUG00000000463) Pika MODERN SPECIES 573 MAIP1 (ENSOPRG00000004142) #16 TYW5 (ENSOPRG00000004133) #17 C2orf69 (ENSOPRG00000004115) #18 SATB2 (ENSOPRG00000003979) #22 Rodentia ANCESTRAL SPECIES 14 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Rodentia_B ANCESTRAL SPECIES 12 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Kangaroo rat MODERN SPECIES 320 ENSDORG00000024018 Hycc2 (ENSDORG00000029531) Orc2 (ENSDORG00000007391) Nif3l1 (ENSDORG00000007390) Ppil3 (ENSDORG00000007389) Clk1 (ENSDORG00000007388) #7 Bzw1 (ENSDORG00000029865) #8 Aox2 (ENSDORG00000026718) #9 Aox4 (ENSDORG00000026668) ##9 Aox3 (ENSDORG00000025305) ##9 Aox1 (ENSDORG00000004358) #10 Kctd18 (ENSDORG00000007817) #12 Spats2l (ENSDORG00000007816) #14 Maip1 (ENSDORG00000012569) #16 Tyw5 (ENSDORG00000012567) #17 Satb2 (ENSDORG00000001292) #22 Plcl1 (ENSDORG00000000485) #25 Boll (ENSDORG00000010791) #27 Mars2 (ENSDORG00000010789) #28 Rftn2 (ENSDORG00000008999) #30 Mob4 (ENSDORG00000023241) ##31 ENSDORG00000011071 ##33 Hspd1 (ENSDORG00000011069) #34 Coq10b (ENSDORG00000025804) #35 Sf3b1 (ENSDORG00000002399) #36 ENSDORG00000029693 #37 ENSDORG00000024945 Pgap1 (ENSDORG00000000406) Gtf3c3 (ENSDORG00000000403) Hecw2 (ENSDORG00000014759) Stk17b (ENSDORG00000029601) Myomorpha ANCESTRAL SPECIES 10 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Lesser Egyptian jerboa MODERN SPECIES 52 ENSJJAG00000013473 Clk1 (ENSJJAG00000024354) #7 Bzw1 (ENSJJAG00000022065) #8 Aox2 (ENSJJAG00000011668) #9 Aox4 (ENSJJAG00000017799) ##9 Aox1 (ENSJJAG00000019598) #10 ENSJJAG00000015058 #11 Kctd18 (ENSJJAG00000016069) #12 Spats2l (ENSJJAG00000019268) #14 ENSJJAG00000010933 ENSJJAG00000012063 Maip1 (ENSJJAG00000023816) #16 Tyw5 (ENSJJAG00000019361) #17 1700066M21Rik (ENSJJAG00000019976) #18 ENSJJAG00000023987 Satb2 (ENSJJAG00000019883) #22 ENSJJAG00000012932 Plcl1 (ENSJJAG00000024297) #25 Boll (ENSJJAG00000015508) #27 Mars2 (ENSJJAG00000023940) #28 Rftn2 (ENSJJAG00000002223) #30 ENSJJAG00000009865 ##31 ENSJJAG00000012025 ##33 ENSJJAG00000016713 ##34 Coq10b (ENSJJAG00000020646) #35 Sf3b1 (ENSJJAG00000010903) #36 ENSJJAG00000018305 Ankrd44 (ENSJJAG00000016107) #37 Pgap1 (ENSJJAG00000009924) Gtf3c3 (ENSJJAG00000004649) Hecw2 (ENSJJAG00000022806) Muroidea ANCESTRAL SPECIES 20 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 ENSGT00390000005285 Upper Galilee mountains blind mole rat MODERN SPECIES 417 ENSNGAG00000023509 ENSNGAG00000022183 Ppil3 (ENSNGAG00000014999) ENSNGAG00000010384 #7 Bzw1 (ENSNGAG00000014200) #8 Aox2 (ENSNGAG00000021935) #9 Aox4 (ENSNGAG00000001220) ##9 Aox3 (ENSNGAG00000019159) ##9 Aox1 (ENSNGAG00000018103) #10 ENSNGAG00000017175 #11 Kctd18 (ENSNGAG00000011886) #12 Spats2l (ENSNGAG00000009131) #14 Maip1 (ENSNGAG00000013388) #16 Tyw5 (ENSNGAG00000022701) #17 1700066M21Rik (ENSNGAG00000015731) #18 Satb2 (ENSNGAG00000023604) #22 Plcl1 (ENSNGAG00000017912) #25 ENSNGAG00000014596 #27 Muroidea_A ANCESTRAL SPECIES 19 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Murinae ANCESTRAL SPECIES 9 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Mus ANCESTRAL SPECIES 5 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b.m.a #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Mus_A ANCESTRAL SPECIES 5 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b.m.a #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493.c #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a.y.b ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929.b Mus_B ANCESTRAL SPECIES 7 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b.p #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b.m.a #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493.c #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a.y.b.a.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929.b Mus_C ANCESTRAL SPECIES 1 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b.p #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b.m.a #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493.c #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a.y.b.a.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929.b ENSGT00390000005285 spretus MODERN SPECIES Hycc2 (MGP_SPRETEiJ_G0014973) Orc2 (MGP_SPRETEiJ_G0014972) Nif3l1 (MGP_SPRETEiJ_G0014971) Ppil3 (MGP_SPRETEiJ_G0014970) Clk1 (MGP_SPRETEiJ_G0014969) #7 Bzw1 (MGP_SPRETEiJ_G0014968) #8 Aox2 (MGP_SPRETEiJ_G0014967) #9 Aox4 (MGP_SPRETEiJ_G0014966) ##9 Aox3 (MGP_SPRETEiJ_G0014965) ##9 Aox1 (MGP_SPRETEiJ_G0014964) #10 Sgo2a (MGP_SPRETEiJ_G0014963) #11 Kctd18 (MGP_SPRETEiJ_G0014962) #12 Spats2l (MGP_SPRETEiJ_G0014961) #14 Maip1 (MGP_SPRETEiJ_G0014960) #16 Tyw5 (MGP_SPRETEiJ_G0014959) #17 Satb2 (MGP_SPRETEiJ_G0014957) #22 Hsfy2 (MGP_SPRETEiJ_G0014956) Plcl1 (MGP_SPRETEiJ_G0014955) #25 MGP_SPRETEiJ_G0014954 #27 Mars2 (MGP_SPRETEiJ_G0014953) #28 Rftn2 (MGP_SPRETEiJ_G0014952) #30 Mob4 (MGP_SPRETEiJ_G0014951) ##31 MGP_SPRETEiJ_G0014950 ##33 MGP_SPRETEiJ_G0014949 ##34 MGP_SPRETEiJ_G0014948 #35 Sf3b1 (MGP_SPRETEiJ_G0014947) #36 Ankrd44 (MGP_SPRETEiJ_G0014946) #37 MGP_SPRETEiJ_G0014945 Gtf3c3 (MGP_SPRETEiJ_G0014944) Ccdc150 (MGP_SPRETEiJ_G0014943) Hecw2 (MGP_SPRETEiJ_G0014942) Steppe mouse MODERN SPECIES 84 Maip1 (ENSMSIG00000012877) #16 Tyw5 (ENSMSIG00000012899) #17 1700066M21Rik (ENSMSIG00000012910) #18 Satb2 (ENSMSIG00000012940) #22 Hsfy2 (ENSMSIG00000013021) Mouse MODERN SPECIES Orc2 (ENSMUSG00000026037) Nif3l1 (ENSMUSG00000026036) Ppil3 (ENSMUSG00000026035) Clk1 (ENSMUSG00000026034) #7 Bzw1 (ENSMUSG00000051223) #8 Aox2 (ENSMUSG00000079554) #9 Aox4 (ENSMUSG00000038242) ##9 Aox3 (ENSMUSG00000064294) ##9 Aox1 (ENSMUSG00000063558) #10 Sgo2a (ENSMUSG00000026039) #11 Kctd18 (ENSMUSG00000054770) #12 Spats2l (ENSMUSG00000038305) #14 Maip1 (ENSMUSG00000025971) #16 Tyw5 (ENSMUSG00000048495) #17 1700066M21Rik (ENSMUSG00000038323) #18 Satb2 (ENSMUSG00000038331) #22 Hsfy2 (ENSMUSG00000045336) Plcl1 (ENSMUSG00000038349) #25 Boll (ENSMUSG00000025977) #27 Mars2 (ENSMUSG00000046994) #28 Rftn2 (ENSMUSG00000025978) #30 Mob4 (ENSMUSG00000025979) ##31 Hspe1 (ENSMUSG00000073676) ##33 Hspd1 (ENSMUSG00000025980) ##34 Coq10b (ENSMUSG00000025981) #35 Sf3b1 (ENSMUSG00000025982) #36 Ankrd44 (ENSMUSG00000052331) #37 Pgap1 (ENSMUSG00000073678) Gm34066 (ENSMUSG00000109809) Gtf3c3 (ENSMUSG00000041303) Ccdc150 (ENSMUSG00000025983) Ryukyu mouse MODERN SPECIES Nif3l1 (MGP_CAROLIEiJ_G0014165) Ppil3 (MGP_CAROLIEiJ_G0014164) Clk1 (MGP_CAROLIEiJ_G0014163) #7 Bzw1 (MGP_CAROLIEiJ_G0014162) #8 Aox2 (MGP_CAROLIEiJ_G0014161) #9 Aox4 (MGP_CAROLIEiJ_G0014160) ##9 Aox3 (MGP_CAROLIEiJ_G0014159) ##9 Aox1 (MGP_CAROLIEiJ_G0014158) #10 MGP_CAROLIEiJ_G0014157 #11 MGP_CAROLIEiJ_G0014156 #11 Kctd18 (MGP_CAROLIEiJ_G0014155) #12 Spats2l (MGP_CAROLIEiJ_G0014154) #14 Maip1 (MGP_CAROLIEiJ_G0014153) #16 Tyw5 (MGP_CAROLIEiJ_G0014152) #17 1700066M21Rik (MGP_CAROLIEiJ_G0014151) #18 Satb2 (MGP_CAROLIEiJ_G0014150) #22 Hsfy2 (MGP_CAROLIEiJ_G0014149) Plcl1 (MGP_CAROLIEiJ_G0014148) #25 Mars2 (MGP_CAROLIEiJ_G0014147) #28 Rftn2 (MGP_CAROLIEiJ_G0014146) #30 Mob4 (MGP_CAROLIEiJ_G0014145) ##31 MGP_CAROLIEiJ_G0014144 ##33 Hspd1 (MGP_CAROLIEiJ_G0014143) ##34 Coq10b (MGP_CAROLIEiJ_G0014142) #35 Sf3b1 (MGP_CAROLIEiJ_G0014141) #36 Ankrd44 (MGP_CAROLIEiJ_G0014140) #37 Pgap1 (MGP_CAROLIEiJ_G0014139) MGP_CAROLIEiJ_G0014138 Ccdc150 (MGP_CAROLIEiJ_G0014137) Hecw2 (MGP_CAROLIEiJ_G0014136) Stk17b (MGP_CAROLIEiJ_G0014135) Shrew mouse MODERN SPECIES 18 Hycc2 (MGP_PahariEiJ_G0027405) Orc2 (MGP_PahariEiJ_G0027404) Nif3l1 (MGP_PahariEiJ_G0027403) Ppil3 (MGP_PahariEiJ_G0027402) Clk1 (MGP_PahariEiJ_G0027401) #7 Bzw1 (MGP_PahariEiJ_G0027400) #8 Aox4 (MGP_PahariEiJ_G0027399) ##9 Aox3 (MGP_PahariEiJ_G0027398) ##9 Aox1 (MGP_PahariEiJ_G0027397) #10 Sgo2a (MGP_PahariEiJ_G0027396) #11 Kctd18 (MGP_PahariEiJ_G0027395) #12 Spats2l (MGP_PahariEiJ_G0027394) #14 Maip1 (MGP_PahariEiJ_G0027393) #16 Tyw5 (MGP_PahariEiJ_G0027392) #17 1700066M21Rik (MGP_PahariEiJ_G0027391) #18 Satb2 (MGP_PahariEiJ_G0027390) #22 Hsfy2 (MGP_PahariEiJ_G0027389) Plcl1 (MGP_PahariEiJ_G0027388) #25 Boll (MGP_PahariEiJ_G0027387) #27 Mars2 (MGP_PahariEiJ_G0027386) #28 Rftn2 (MGP_PahariEiJ_G0027385) #30 MGP_PahariEiJ_G0027384 ##31 MGP_PahariEiJ_G0027383 ##33 MGP_PahariEiJ_G0027382 ##34 Coq10b (MGP_PahariEiJ_G0027381) #35 Ankrd44 (MGP_PahariEiJ_G0027379) #37 Pgap1 (MGP_PahariEiJ_G0027378) Gtf3c3 (MGP_PahariEiJ_G0027377) Ccdc150 (MGP_PahariEiJ_G0027376) Hecw2 (MGP_PahariEiJ_G0027375) Stk17b (MGP_PahariEiJ_G0027374) Rat MODERN SPECIES 19 Orc2 (ENSRNOG00000012558) Nif3l1 (ENSRNOG00000013446) Ppil3 (ENSRNOG00000013636) Clk1 (ENSRNOG00000025768) #7 Bzw1 (ENSRNOG00000013977) #8 Aox2 (ENSRNOG00000033923) #9 ENSRNOG00000068995 Aox3 (ENSRNOG00000014555) ##9 Aox1 (ENSRNOG00000015354) #10 Sgo2 (ENSRNOG00000027035) #11 Kctd18 (ENSRNOG00000027091) #12 Spats2l (ENSRNOG00000016012) #14 Maip1 (ENSRNOG00000015983) #16 Tyw5 (ENSRNOG00000010100) #17 RGD1306941 (ENSRNOG00000010185) #18 Satb2 (ENSRNOG00000010188) #22 Hsfy2 (ENSRNOG00000038569) Plcl1 (ENSRNOG00000032659) #25 Boll (ENSRNOG00000054379) #27 Mars2 (ENSRNOG00000065339) #28 AABR07067762.1 (ENSRNOG00000055383) Rftn2 (ENSRNOG00000015594) #30 Mob4 (ENSRNOG00000014980) ##31 Hspe1 (ENSRNOG00000051624) ##33 Hspd1 (ENSRNOG00000014525) ##34 Coq10b (ENSRNOG00000014456) #35 Sf3b1 (ENSRNOG00000013516) #36 Tmem258b (ENSRNOG00000032740) Ankrd44 (ENSRNOG00000021384) #37 Pgap1 (ENSRNOG00000013388) LOC686030 (ENSRNOG00000067303) Cricetidae ANCESTRAL SPECIES 19 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b.w.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 Cricetinae ANCESTRAL SPECIES 3 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.b ##33 ENSGT00390000005727.a.b.b.w.a ##34 ENSGT00390000005727.a.b.b.w.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 Chinese hamster chok1gshd MODERN SPECIES 1 Orc2 (ENSCGRG00001016911) ENSCGRG00001018137 Ppil3 (ENSCGRG00001021470) Clk1 (ENSCGRG00001018410) #7 Bzw1 (ENSCGRG00001017178) #8 Aox2 (ENSCGRG00001017735) #9 Aox4 (ENSCGRG00001016089) ##9 Aox3 (ENSCGRG00001016559) ##9 Aox1 (ENSCGRG00001018485) #10 ENSCGRG00001016045 #11 Kctd18 (ENSCGRG00001016666) #12 Spats2l (ENSCGRG00001019123) #14 Maip1 (ENSCGRG00001018639) #16 Tyw5 (ENSCGRG00001015297) #17 1700066M21Rik (ENSCGRG00001016585) #18 Satb2 (ENSCGRG00001019669) #22 Hsfy2 (ENSCGRG00001009926) ENSCGRG00001010393 Plcl1 (ENSCGRG00001015676) #25 ENSCGRG00001009537 Boll (ENSCGRG00001020168) #27 Mars2 (ENSCGRG00001010364) #28 Rftn2 (ENSCGRG00001017788) #30 Mob4 (ENSCGRG00001024203) ##31 ENSCGRG00001015345 ##33 HSPD1 (ENSCGRG00001021126) ##34 Coq10b (ENSCGRG00001015271) #35 Sf3b1 (ENSCGRG00001016990) #36 Ankrd44 (ENSCGRG00001018584) #37 Pgap1 (ENSCGRG00001016707) Gtf3c3 (ENSCGRG00001014543) Golden Hamster MODERN SPECIES 723 Aox1 (ENSMAUG00000014270) #10 ENSMAUG00000000248 #11 Kctd18 (ENSMAUG00000019856) #12 Spats2l (ENSMAUG00000016921) #14 Maip1 (ENSMAUG00000007424) #16 Tyw5 (ENSMAUG00000009449) #17 1700066M21Rik (ENSMAUG00000017438) #18 Satb2 (ENSMAUG00000008545) #22 Plcl1 (ENSMAUG00000003415) #25 Boll (ENSMAUG00000008224) #27 Mars2 (ENSMAUG00000017224) #28 Rftn2 (ENSMAUG00000014348) #30 ENSMAUG00000007042 ##31 ENSMAUG00000017789 ##34 Coq10b (ENSMAUG00000010644) #35 Sf3b1 (ENSMAUG00000009071) #36 Ankrd44 (ENSMAUG00000019633) #37 Pgap1 (ENSMAUG00000018155) Gtf3c3 (ENSMAUG00000018770) Ccdc150 (ENSMAUG00000015624) Hecw2 (ENSMAUG00000011882) Stk17b (ENSMAUG00000018862) ENSMAUG00000020218 Cricetidae_B ANCESTRAL SPECIES 20 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #25 ENSGT01030000235401 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT00390000006350.m.a.c.a.`b ##33 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a.ab ##33 ENSGT00390000005727.a.b.b.w.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 Prairie vole MODERN SPECIES 91 Hycc2 (ENSMOCG00000012367) Orc2 (ENSMOCG00000016158) Nif3l1 (ENSMOCG00000012327) ENSMOCG00000013096 ENSMOCG00000005608 #7 Bzw1 (ENSMOCG00000008375) #8 Aox2 (ENSMOCG00000018237) #9 Aox4 (ENSMOCG00000015766) ##9 Aox1 (ENSMOCG00000001195) #10 ENSMOCG00000012099 #11 Kctd18 (ENSMOCG00000018835) #12 Spats2l (ENSMOCG00000006136) #14 Maip1 (ENSMOCG00000008182) #16 Tyw5 (ENSMOCG00000018540) #17 1700066M21Rik (ENSMOCG00000018970) #18 ENSMOCG00000005756 #22 Hsfy2 (ENSMOCG00000013974) Plcl1 (ENSMOCG00000014862) #25 Boll (ENSMOCG00000022824) #27 Mars2 (ENSMOCG00000006676) #28 Rftn2 (ENSMOCG00000020060) #30 ENSMOCG00000000253 ##33 Mob4 (ENSMOCG00000020652) ##31 ENSMOCG00000002787 ##34 Coq10b (ENSMOCG00000012636) #35 Sf3b1 (ENSMOCG00000000455) #36 ENSMOCG00000021330 #37 Pgap1 (ENSMOCG00000013936) Gtf3c3 (ENSMOCG00000019654) Ccdc150 (ENSMOCG00000001399) Hecw2 (ENSMOCG00000012140) Northern American deer mouse MODERN SPECIES 4 Hycc2 (ENSPEMG00000014604) Orc2 (ENSPEMG00000010035) Nif3l1 (ENSPEMG00000023040) Ppil3 (ENSPEMG00000011585) Clk1 (ENSPEMG00000022508) #7 ENSPEMG00000013940 #8 Aox2 (ENSPEMG00000022861) #9 ENSPEMG00000027085 ##9 Aox1 (ENSPEMG00000000656) #10 ENSPEMG00000020091 #11 Kctd18 (ENSPEMG00000028635) #12 Spats2l (ENSPEMG00000020003) #14 Maip1 (ENSPEMG00000015287) #16 Tyw5 (ENSPEMG00000009506) #17 1700066M21Rik (ENSPEMG00000001657) #18 Satb2 (ENSPEMG00000013811) #22 Hsfy2 (ENSPEMG00000029057) Plcl1 (ENSPEMG00000001849) #25 ENSPEMG00000024520 Boll (ENSPEMG00000018168) #27 Mars2 (ENSPEMG00000008377) #28 Rftn2 (ENSPEMG00000000048) #30 Mob4 (ENSPEMG00000017361) ##31 ENSPEMG00000029712 ENSPEMG00000010504 ##33 Hspd1 (ENSPEMG00000015411) ##34 Coq10b (ENSPEMG00000005817) #35 Sf3b1 (ENSPEMG00000010699) #36 Ankrd44 (ENSPEMG00000016873) #37 Pgap1 (ENSPEMG00000008939) ENSPEMG00000024521 Rodentia_A ANCESTRAL SPECIES 13 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00390000006350.m.a.c.b.b ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000009468 ENSGT00390000016929 Sciuridae ANCESTRAL SPECIES 10 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000167666 Marmotini ANCESTRAL SPECIES 2 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b.v #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000012178.g.a.a ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a.v ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Marmotini_b ANCESTRAL SPECIES 91 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000005581.b #19 ENSGT00390000012178.g.a.a ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.a.v ##33 ENSGT00390000005727.a.b.b ##34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Squirrel MODERN SPECIES 106 SATB2 (ENSSTOG00000024964) #22 PLCL1 (ENSSTOG00000026164) #25 BOLL (ENSSTOG00000003536) #27 MARS2 (ENSSTOG00000015451) #28 RFTN2 (ENSSTOG00000015446) #30 MOB4 (ENSSTOG00000021024) ##31 ENSSTOG00000031333 ##33 ENSSTOG00000028470 ##34 COQ10B (ENSSTOG00000011048) #35 SF3B1 (ENSSTOG00000011034) #36 ANKRD44 (ENSSTOG00000012130) #37 PGAP1 (ENSSTOG00000010633) GTF3C3 (ENSSTOG00000011894) ENSSTOG00000014552 HECW2 (ENSSTOG00000015188) STK17B (ENSSTOG00000020599) Arctic ground squirrel MODERN SPECIES 210 ENSUPAG00010015923 ##9 AOX1 (ENSUPAG00010015861) #10 SGO2 (ENSUPAG00010015843) #11 KCTD18 (ENSUPAG00010015819) #12 SPATS2L (ENSUPAG00010015777) #14 MAIP1 (ENSUPAG00010015760) #16 TYW5 (ENSUPAG00010015739) #17 C2orf69 (ENSUPAG00010015730) #18 FTCDNL1 (ENSUPAG00010015721) #19 ENSUPAG00010015718 SATB2 (ENSUPAG00010015643) #22 PLCL1 (ENSUPAG00010015612) #25 BOLL (ENSUPAG00010015589) #27 MARS2 (ENSUPAG00010015585) #28 RFTN2 (ENSUPAG00010015580) #30 ENSUPAG00010015569 ##33 ENSUPAG00010015563 ##34 COQ10B (ENSUPAG00010015540) #35 SF3B1 (ENSUPAG00010015518) #36 Alpin marmot MODERN SPECIES 8 PPIL3 (ENSMMMG00000012069) CLK1 (ENSMMMG00000012051) #7 ENSMMMG00000012026 #8 ENSMMMG00000011976 #9 ENSMMMG00000011959 ENSMMMG00000011912 ##9 AOX1 (ENSMMMG00000011886) #10 ENSMMMG00000011877 #11 KCTD18 (ENSMMMG00000011839) #12 SPATS2L (ENSMMMG00000011689) #14 MAIP1 (ENSMMMG00000011679) #16 TYW5 (ENSMMMG00000011668) #17 C2orf69 (ENSMMMG00000011660) #18 FTCDNL1 (ENSMMMG00000011655) #19 ENSMMMG00000011650 SATB2 (ENSMMMG00000011551) #22 ENSMMMG00000011481 PLCL1 (ENSMMMG00000011429) #25 BOLL (ENSMMMG00000011354) #27 MARS2 (ENSMMMG00000011347) #28 RFTN2 (ENSMMMG00000011220) #30 ENSMMMG00000011174 ##31 ENSMMMG00000011161 ##33 ENSMMMG00000011138 #34 ENSMMMG00000011101 #35 SF3B1 (ENSMMMG00000011081) #36 ANKRD44 (ENSMMMG00000010980) #37 PGAP1 (ENSMMMG00000010912) GTF3C3 (ENSMMMG00000010874) ENSMMMG00000010858 ENSMMMG00000010842 Eurasian red squirrel MODERN SPECIES 12 NIF3L1 (ENSSVLG00005004091) PPIL3 (ENSSVLG00005004070) CLK1 (ENSSVLG00005004020) #7 BZW1 (ENSSVLG00005003945) #8 ENSSVLG00005003845 #9 ENSSVLG00005003767 ##9 AOX1 (ENSSVLG00005003683) #10 SGO2 (ENSSVLG00005003633) #11 ENSSVLG00005003604 #12 SPATS2L (ENSSVLG00005003512) #14 MAIP1 (ENSSVLG00005003433) #16 TYW5 (ENSSVLG00005003405) #17 C2orf69 (ENSSVLG00005003387) #18 FTCDNL1 (ENSSVLG00005003343) #19 ENSSVLG00005003317 SATB2 (ENSSVLG00005003278) #22 PLCL1 (ENSSVLG00005003227) #25 ENSSVLG00005003207 BOLL (ENSSVLG00005003123) #27 MARS2 (ENSSVLG00005003085) #28 RFTN2 (ENSSVLG00005003057) #30 MOB4 (ENSSVLG00005002989) ##31 HSPE1 (ENSSVLG00005002940) ##33 ENSSVLG00005002895 #34 ENSSVLG00005002862 #35 SF3B1 (ENSSVLG00005002801) #36 ANKRD44 (ENSSVLG00005002705) #37 PGAP1 (ENSSVLG00005002564) C2orf66 (ENSSVLG00005002524) ENSSVLG00005002519 GTF3C3 (ENSSVLG00005002487) Hystricomorpha ANCESTRAL SPECIES 20 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.b.b ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Hystricomorpha_a ANCESTRAL SPECIES 17 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.b.b ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Hystricomorpha_b ANCESTRAL SPECIES 24 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B ENSGT00940000159722 #7 ENSGT00390000012561.b #8 ENSGT00950000183114.a.b.b.f.a.b #9 ENSGT00950000183114.a.b.b.f.a.a ##9 ENSGT00950000183114.a.b.b.f.b #10 ENSGT00940000154107.b #11 ENSGT00530000064234 #12 ENSGT00390000001138.b #14 ENSGT00390000004145 #16 ENSGT00940000158493 #17 ENSGT00390000005550 #18 ENSGT00390000008096.B #22 ENSGT00940000158407 #25 ENSGT00530000063480.a #27 ENSGT00550000075136 #28 ENSGT00530000063609.a #30 ENSGT01050000244956.b.d ##31 ENSGT00390000006350.m.a.c.b.b.a.b ##33 ENSGT00390000005727.a.b.a.b #34 ENSGT00940000155367 #35 ENSGT00390000018393 #36 ENSGT00950000182908.D #37 ENSGT00390000016484 ENSGT00390000016929 ENSGT00390000005285 ENSGT00940000155466 ENSGT00940000154014.b.b Degu MODERN SPECIES 66 ENSODEG00000007860 ORC2 (ENSODEG00000008853) NIF3L1 (ENSODEG00000008894) PPIL3 (ENSODEG00000007592) CLK1 (ENSODEG00000009021) #7 ENSODEG00000019563 ENSODEG00000008411 #8 ENSODEG00000008135 #9 ENSODEG00000011138 ##9 AOX1 (ENSODEG00000012914) #10 ENSODEG00000009211 #12 SPATS2L (ENSODEG00000009851) #14 MAIP1 (ENSODEG00000008914) #16 TYW5 (ENSODEG00000009836) #17 C2orf69 (ENSODEG00000008700) #18 SATB2 (ENSODEG00000008383) #22 PLCL1 (ENSODEG00000008918) #25 BOLL (ENSODEG00000008471) #27 RFTN2 (ENSODEG00000008704) #30 MOB4 (ENSODEG00000009609) ##31 ENSODEG00000019874 ##13 ENSODEG00000011397 ##33 ENSODEG00000009026 #34 COQ10B (ENSODEG00000008396) #35 ENSODEG00000011153 #36 ENSODEG00000019820 ENSODEG00000008898 #37 ENSODEG00000008698 ENSODEG00000009525 PGAP1 (ENSODEG00000009932) ENSODEG00000009843 Long-tailed chinchilla MODERN SPECIES 110 HYCC2 (ENSCLAG00000011177) ORC2 (ENSCLAG00000013209) NIF3L1 (ENSCLAG00000013524) PPIL3 (ENSCLAG00000014050) CLK1 (ENSCLAG00000011455) #7 BZW1 (ENSCLAG00000012079) #8 ENSCLAG00000011199 #9 ENSCLAG00000014402 ##9 AOX1 (ENSCLAG00000011481) #10 ENSCLAG00000012456 #11 ENSCLAG00000014377 #12 SPATS2L (ENSCLAG00000013167) #14 MAIP1 (ENSCLAG00000011913) #16 TYW5 (ENSCLAG00000012009) #17 C2orf69 (ENSCLAG00000012813) #18 SATB2 (ENSCLAG00000016994) #22 PLCL1 (ENSCLAG00000016098) #25 BOLL (ENSCLAG00000017375) #27 MARS2 (ENSCLAG00000010386) #28 RFTN2 (ENSCLAG00000009821) #30 MOB4 (ENSCLAG00000010086) ##31 ENSCLAG00000010686 ##33 HSPD1 (ENSCLAG00000011541) #34 COQ10B (ENSCLAG00000017377) #35 SF3B1 (ENSCLAG00000014767) #36 ANKRD44 (ENSCLAG00000015396) #37 PGAP1 (ENSCLAG00000011838) GTF3C3 (ENSCLAG00000009827) CCDC150 (ENSCLAG00000012365) HECW2 (ENSCLAG00000011628) STK17B (ENSCLAG00000012520) Guinea pig MODERN SPECIES 104 HYCC2 (ENSCPOG00000010108) ORC2 (ENSCPOG00000004552) NIF3L1 (ENSCPOG00000008572) PPIL3 (ENSCPOG00000008570) CLK1 (ENSCPOG00000027067) #7 ENSCPOG00000010449 #8 ENSCPOG00000019962 #9 ENSCPOG00000033032 ##9 Aox1 (ENSCPOG00000025955) #10 ENSCPOG00000002722 #11 ENSCPOG00000012077 #12 SPATS2L (ENSCPOG00000003190) #14 MAIP1 (ENSCPOG00000003800) #16 TYW5 (ENSCPOG00000035856) #17 C2orf69 (ENSCPOG00000009934) #18 SATB2 (ENSCPOG00000015198) #22 PLCL1 (ENSCPOG00000011478) #25 BOLL (ENSCPOG00000000390) #27 MARS2 (ENSCPOG00000025973) #28 RFTN2 (ENSCPOG00000010463) #30 MOB4 (ENSCPOG00000012746) ##31 ENSCPOG00000027474 ##33 HSPD1 (ENSCPOG00000002588) #34 COQ10B (ENSCPOG00000002673) #35 SF3B1 (ENSCPOG00000009353) #36 ANKRD44 (ENSCPOG00000026494) #37 PGAP1 (ENSCPOG00000003177) GTF3C3 (ENSCPOG00000006643) CCDC150 (ENSCPOG00000031267) ENSCPOG00000040067 HECW2 (ENSCPOG00000008908) Naked mole-rat female MODERN SPECIES 22 PPIL3 (ENSHGLG00000035729) Clk1 (ENSHGLG00000011322) #7 BZW1 (ENSHGLG00000011961) #8 ENSHGLG00000012205 #9 Aox4 (ENSHGLG00000012471) ##9 AOX1 (ENSHGLG00000012876) #10 SGO2 (ENSHGLG00000015359) #11 ENSHGLG00000047532 ENSHGLG00000015370 #12 SPATS2L (ENSHGLG00000015420) #14 ENSHGLG00000017615 MAIP1 (ENSHGLG00000017548) #16 TYW5 (ENSHGLG00000017557) #17 C2orf69 (ENSHGLG00000040936) #18 ENSHGLG00000020697 SATB2 (ENSHGLG00000015892) #22 ENSHGLG00000043283 PLCL1 (ENSHGLG00000015970) #25 BOLL (ENSHGLG00000017562) #27 MARS2 (ENSHGLG00000049320) #28 RFTN2 (ENSHGLG00000017636) #30 MOB4 (ENSHGLG00000050196) ##31 ENSHGLG00000042669 ##33 HSPD1 (ENSHGLG00000007927) #34 ENSHGLG00000038699 #35 ENSHGLG00000008285 #36 ANKRD44 (ENSHGLG00000008625) #37 ENSHGLG00000049153 ENSHGLG00000040344 ENSHGLG00000008965 ENSHGLG00000042696