Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.b.a.b ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.b.b #28	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.b ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Glires	ANCESTRAL SPECIES	14	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00390000006350.m.a.c.b.b #28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.b.b #28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.b.b #28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.b.b.a.b ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Degu	MODERN SPECIES	66	ENSODEG00000007860 #7	ORC2 (ENSODEG00000008853) #8	NIF3L1 (ENSODEG00000008894) #9	PPIL3 (ENSODEG00000007592) #10	CLK1 (ENSODEG00000009021) #11	ENSODEG00000019563 #12	ENSODEG00000008411 #13	ENSODEG00000008135 #14	ENSODEG00000011138 #15	AOX1 (ENSODEG00000012914) #16	ENSODEG00000009211 #17	SPATS2L (ENSODEG00000009851) #18	MAIP1 (ENSODEG00000008914) #19	TYW5 (ENSODEG00000009836) #20	C2orf69 (ENSODEG00000008700) #21	SATB2 (ENSODEG00000008383) #22	PLCL1 (ENSODEG00000008918) #23	BOLL (ENSODEG00000008471) #24	RFTN2 (ENSODEG00000008704) #25	MOB4 (ENSODEG00000009609) #26	ENSODEG00000019874 #27	ENSODEG00000011397 #28	ENSODEG00000009026 #29	COQ10B (ENSODEG00000008396) #30	ENSODEG00000011153 #31	ENSODEG00000019820 #32	ENSODEG00000008898 #33	ENSODEG00000008698 #34	ENSODEG00000009525 #35	PGAP1 (ENSODEG00000009932) #36	ENSODEG00000009843 #37
Long-tailed chinchilla	MODERN SPECIES	110	HYCC2 (ENSCLAG00000011177)	ORC2 (ENSCLAG00000013209) #8	NIF3L1 (ENSCLAG00000013524) #9	PPIL3 (ENSCLAG00000014050) #10	CLK1 (ENSCLAG00000011455) #11	BZW1 (ENSCLAG00000012079) #13	ENSCLAG00000011199 #14	ENSCLAG00000014402 #15	AOX1 (ENSCLAG00000011481) #16	ENSCLAG00000012456	ENSCLAG00000014377 #17	SPATS2L (ENSCLAG00000013167) #18	MAIP1 (ENSCLAG00000011913) #19	TYW5 (ENSCLAG00000012009) #20	C2orf69 (ENSCLAG00000012813) #21	SATB2 (ENSCLAG00000016994) #22	PLCL1 (ENSCLAG00000016098) #23	BOLL (ENSCLAG00000017375) #24	MARS2 (ENSCLAG00000010386)	RFTN2 (ENSCLAG00000009821) #25	MOB4 (ENSCLAG00000010086) #26	ENSCLAG00000010686 ##28	HSPD1 (ENSCLAG00000011541) #29	COQ10B (ENSCLAG00000017377) #30	SF3B1 (ENSCLAG00000014767) #31	ANKRD44 (ENSCLAG00000015396) #33	PGAP1 (ENSCLAG00000011838) #36	GTF3C3 (ENSCLAG00000009827) #37	CCDC150 (ENSCLAG00000012365)	HECW2 (ENSCLAG00000011628)	STK17B (ENSCLAG00000012520)
Guinea pig	MODERN SPECIES	104	HYCC2 (ENSCPOG00000010108)	ORC2 (ENSCPOG00000004552) #8	NIF3L1 (ENSCPOG00000008572) #9	PPIL3 (ENSCPOG00000008570) #10	CLK1 (ENSCPOG00000027067) #11	ENSCPOG00000010449 #13	ENSCPOG00000019962 #14	ENSCPOG00000033032 #15	Aox1 (ENSCPOG00000025955) #16	ENSCPOG00000002722	ENSCPOG00000012077 #17	SPATS2L (ENSCPOG00000003190) #18	MAIP1 (ENSCPOG00000003800) #19	TYW5 (ENSCPOG00000035856) #20	C2orf69 (ENSCPOG00000009934) #21	SATB2 (ENSCPOG00000015198) #22	PLCL1 (ENSCPOG00000011478) #23	BOLL (ENSCPOG00000000390) #24	MARS2 (ENSCPOG00000025973)	RFTN2 (ENSCPOG00000010463) #25	MOB4 (ENSCPOG00000012746) #26	ENSCPOG00000027474 #28	HSPD1 (ENSCPOG00000002588) #29	COQ10B (ENSCPOG00000002673) #30	SF3B1 (ENSCPOG00000009353) #31	ANKRD44 (ENSCPOG00000026494) #33	PGAP1 (ENSCPOG00000003177) #36	GTF3C3 (ENSCPOG00000006643) #37	CCDC150 (ENSCPOG00000031267)	ENSCPOG00000040067	HECW2 (ENSCPOG00000008908)
Naked mole-rat female	MODERN SPECIES	22	PPIL3 (ENSHGLG00000035729) #10	Clk1 (ENSHGLG00000011322) #11	BZW1 (ENSHGLG00000011961) #13	ENSHGLG00000012205 #14	Aox4 (ENSHGLG00000012471) #15	AOX1 (ENSHGLG00000012876) #16	SGO2 (ENSHGLG00000015359)	ENSHGLG00000047532	ENSHGLG00000015370 #17	SPATS2L (ENSHGLG00000015420) #18	ENSHGLG00000017615	MAIP1 (ENSHGLG00000017548) #19	TYW5 (ENSHGLG00000017557) #20	C2orf69 (ENSHGLG00000040936) #21	ENSHGLG00000020697	SATB2 (ENSHGLG00000015892) #22	ENSHGLG00000043283	PLCL1 (ENSHGLG00000015970) #23	BOLL (ENSHGLG00000017562) #24	MARS2 (ENSHGLG00000049320)	RFTN2 (ENSHGLG00000017636) #25	MOB4 (ENSHGLG00000050196) #26	ENSHGLG00000042669 #28	HSPD1 (ENSHGLG00000007927) #29	ENSHGLG00000038699 #30	ENSHGLG00000008285 #31	ANKRD44 (ENSHGLG00000008625) #33	ENSHGLG00000049153	ENSHGLG00000040344	ENSHGLG00000008965 #36	ENSHGLG00000042696
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.v #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000012178.g.a.a	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a.v ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Marmotini_b	ANCESTRAL SPECIES	91						ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000012178.g.a.a	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a.v ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Squirrel	MODERN SPECIES	106																SATB2 (ENSSTOG00000024964) #22	PLCL1 (ENSSTOG00000026164) #23	BOLL (ENSSTOG00000003536) #24	MARS2 (ENSSTOG00000015451)	RFTN2 (ENSSTOG00000015446) #25	MOB4 (ENSSTOG00000021024) #26	ENSSTOG00000031333 ##28	ENSSTOG00000028470 ##29	COQ10B (ENSSTOG00000011048) #30	SF3B1 (ENSSTOG00000011034) #31	ANKRD44 (ENSSTOG00000012130) #33	PGAP1 (ENSSTOG00000010633) #36	GTF3C3 (ENSSTOG00000011894) #37	ENSSTOG00000014552	HECW2 (ENSSTOG00000015188)	STK17B (ENSSTOG00000020599)
Arctic ground squirrel	MODERN SPECIES	210						ENSUPAG00010015923 #15	AOX1 (ENSUPAG00010015861) #16	SGO2 (ENSUPAG00010015843)	KCTD18 (ENSUPAG00010015819) #17	SPATS2L (ENSUPAG00010015777) #18	MAIP1 (ENSUPAG00010015760) #19	TYW5 (ENSUPAG00010015739) #20	C2orf69 (ENSUPAG00010015730) #21	FTCDNL1 (ENSUPAG00010015721)	ENSUPAG00010015718	SATB2 (ENSUPAG00010015643) #22	PLCL1 (ENSUPAG00010015612) #23	BOLL (ENSUPAG00010015589) #24	MARS2 (ENSUPAG00010015585)	RFTN2 (ENSUPAG00010015580) #25	ENSUPAG00010015569 ##28	ENSUPAG00010015563 ##29	COQ10B (ENSUPAG00010015540) #30	SF3B1 (ENSUPAG00010015518) #31
Alpin marmot	MODERN SPECIES	8	PPIL3 (ENSMMMG00000012069) #10	CLK1 (ENSMMMG00000012051) #11	ENSMMMG00000012026 #13	ENSMMMG00000011976 #14	ENSMMMG00000011959	ENSMMMG00000011912 #15	AOX1 (ENSMMMG00000011886) #16	ENSMMMG00000011877	KCTD18 (ENSMMMG00000011839) #17	SPATS2L (ENSMMMG00000011689) #18	MAIP1 (ENSMMMG00000011679) #19	TYW5 (ENSMMMG00000011668) #20	C2orf69 (ENSMMMG00000011660) #21	FTCDNL1 (ENSMMMG00000011655)	ENSMMMG00000011650	SATB2 (ENSMMMG00000011551) #22	ENSMMMG00000011481	PLCL1 (ENSMMMG00000011429) #23	BOLL (ENSMMMG00000011354) #24	MARS2 (ENSMMMG00000011347)	RFTN2 (ENSMMMG00000011220) #25	ENSMMMG00000011174 #26	ENSMMMG00000011161 ##28	ENSMMMG00000011138 #29	ENSMMMG00000011101 #30	SF3B1 (ENSMMMG00000011081) #31	ANKRD44 (ENSMMMG00000010980) #33	PGAP1 (ENSMMMG00000010912) #36	GTF3C3 (ENSMMMG00000010874) #37	ENSMMMG00000010858	ENSMMMG00000010842
Eurasian red squirrel	MODERN SPECIES	12	NIF3L1 (ENSSVLG00005004091) #9	PPIL3 (ENSSVLG00005004070) #10	CLK1 (ENSSVLG00005004020) #11	BZW1 (ENSSVLG00005003945) #13	ENSSVLG00005003845 #14	ENSSVLG00005003767 #15	AOX1 (ENSSVLG00005003683) #16	SGO2 (ENSSVLG00005003633)	ENSSVLG00005003604 #17	SPATS2L (ENSSVLG00005003512) #18	MAIP1 (ENSSVLG00005003433) #19	TYW5 (ENSSVLG00005003405) #20	C2orf69 (ENSSVLG00005003387) #21	FTCDNL1 (ENSSVLG00005003343)	ENSSVLG00005003317	SATB2 (ENSSVLG00005003278) #22	PLCL1 (ENSSVLG00005003227) #23	ENSSVLG00005003207	BOLL (ENSSVLG00005003123) #24	MARS2 (ENSSVLG00005003085)	RFTN2 (ENSSVLG00005003057) #25	MOB4 (ENSSVLG00005002989) #26	HSPE1 (ENSSVLG00005002940) ##28	ENSSVLG00005002895 #29	ENSSVLG00005002862 #30	SF3B1 (ENSSVLG00005002801) #31	ANKRD44 (ENSSVLG00005002705) #33	PGAP1 (ENSSVLG00005002564) #36	C2orf66 (ENSSVLG00005002524)	ENSSVLG00005002519	GTF3C3 (ENSSVLG00005002487) #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000024018	Hycc2 (ENSDORG00000029531)	Orc2 (ENSDORG00000007391) #8	Nif3l1 (ENSDORG00000007390) #9	Ppil3 (ENSDORG00000007389) #10	Clk1 (ENSDORG00000007388) #11	Bzw1 (ENSDORG00000029865) #13	Aox2 (ENSDORG00000026718) #14	Aox4 (ENSDORG00000026668) #15	Aox3 (ENSDORG00000025305) #15	Aox1 (ENSDORG00000004358) #16	Kctd18 (ENSDORG00000007817) #17	Spats2l (ENSDORG00000007816) #18	Maip1 (ENSDORG00000012569) #19	Tyw5 (ENSDORG00000012567) #20	Satb2 (ENSDORG00000001292) #22	Plcl1 (ENSDORG00000000485) #23	Boll (ENSDORG00000010791) #24	Mars2 (ENSDORG00000010789)	Rftn2 (ENSDORG00000008999) #25	Mob4 (ENSDORG00000023241) #26	ENSDORG00000011071 #28	Hspd1 (ENSDORG00000011069) #29	Coq10b (ENSDORG00000025804) #30	Sf3b1 (ENSDORG00000002399) #31	ENSDORG00000029693 #33	ENSDORG00000024945	Pgap1 (ENSDORG00000000406) #36	Gtf3c3 (ENSDORG00000000403) #37	Hecw2 (ENSDORG00000014759)	Stk17b (ENSDORG00000029601)
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000013473	Clk1 (ENSJJAG00000024354) #11	Bzw1 (ENSJJAG00000022065) #13	Aox2 (ENSJJAG00000011668) #14	Aox4 (ENSJJAG00000017799) #15	Aox1 (ENSJJAG00000019598) #16	ENSJJAG00000015058	Kctd18 (ENSJJAG00000016069) #17	Spats2l (ENSJJAG00000019268) #18	ENSJJAG00000010933	ENSJJAG00000012063	Maip1 (ENSJJAG00000023816) #19	Tyw5 (ENSJJAG00000019361) #20	1700066M21Rik (ENSJJAG00000019976) #21	ENSJJAG00000023987	Satb2 (ENSJJAG00000019883) #22	ENSJJAG00000012932	Plcl1 (ENSJJAG00000024297) #23	Boll (ENSJJAG00000015508) #24	Mars2 (ENSJJAG00000023940)	Rftn2 (ENSJJAG00000002223) #25	ENSJJAG00000009865 #26	ENSJJAG00000012025 ##28	ENSJJAG00000016713 ##29	Coq10b (ENSJJAG00000020646) #30	Sf3b1 (ENSJJAG00000010903) #31	ENSJJAG00000018305	Ankrd44 (ENSJJAG00000016107) #33	Pgap1 (ENSJJAG00000009924) #36	Gtf3c3 (ENSJJAG00000004649) #37	Hecw2 (ENSJJAG00000022806)
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Upper Galilee mountains blind mole rat	MODERN SPECIES	417	ENSNGAG00000023509 #8	ENSNGAG00000022183 #9	Ppil3 (ENSNGAG00000014999) #10	ENSNGAG00000010384 #11	Bzw1 (ENSNGAG00000014200) #13	Aox2 (ENSNGAG00000021935) #14	Aox4 (ENSNGAG00000001220) #15	Aox3 (ENSNGAG00000019159) #15	Aox1 (ENSNGAG00000018103) #16	ENSNGAG00000017175	Kctd18 (ENSNGAG00000011886) #17	Spats2l (ENSNGAG00000009131) #18	Maip1 (ENSNGAG00000013388) #19	Tyw5 (ENSNGAG00000022701) #20	1700066M21Rik (ENSNGAG00000015731) #21	Satb2 (ENSNGAG00000023604) #22	Plcl1 (ENSNGAG00000017912) #23	ENSNGAG00000014596 #24
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Murinae	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b.m.a	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b.m.a	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a.y.b ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929.b #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.p #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b.m.a	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a.y.b.a.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929.b #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.p #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b.m.a	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a.y.b.a.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929.b #37	ENSGT00390000005285
spretus	MODERN SPECIES		Hycc2 (MGP_SPRETEiJ_G0014973)	Orc2 (MGP_SPRETEiJ_G0014972) #8	Nif3l1 (MGP_SPRETEiJ_G0014971) #9	Ppil3 (MGP_SPRETEiJ_G0014970) #10	Clk1 (MGP_SPRETEiJ_G0014969) #11	Bzw1 (MGP_SPRETEiJ_G0014968) #13	Aox2 (MGP_SPRETEiJ_G0014967) #14	Aox4 (MGP_SPRETEiJ_G0014966) #15	Aox3 (MGP_SPRETEiJ_G0014965) #15	Aox1 (MGP_SPRETEiJ_G0014964) #16	Sgo2a (MGP_SPRETEiJ_G0014963)	Kctd18 (MGP_SPRETEiJ_G0014962) #17	Spats2l (MGP_SPRETEiJ_G0014961) #18	Maip1 (MGP_SPRETEiJ_G0014960) #19	Tyw5 (MGP_SPRETEiJ_G0014959) #20	Satb2 (MGP_SPRETEiJ_G0014957) #22	Hsfy2 (MGP_SPRETEiJ_G0014956)	Plcl1 (MGP_SPRETEiJ_G0014955) #23	MGP_SPRETEiJ_G0014954 #24	Mars2 (MGP_SPRETEiJ_G0014953)	Rftn2 (MGP_SPRETEiJ_G0014952) #25	Mob4 (MGP_SPRETEiJ_G0014951) #26	MGP_SPRETEiJ_G0014950 ##28	MGP_SPRETEiJ_G0014949 ##29	MGP_SPRETEiJ_G0014948 #30	Sf3b1 (MGP_SPRETEiJ_G0014947) #31	Ankrd44 (MGP_SPRETEiJ_G0014946) #33	MGP_SPRETEiJ_G0014945 #36	Gtf3c3 (MGP_SPRETEiJ_G0014944) #37	Ccdc150 (MGP_SPRETEiJ_G0014943)	Hecw2 (MGP_SPRETEiJ_G0014942)
Steppe mouse	MODERN SPECIES	84													Maip1 (ENSMSIG00000012877) #19	Tyw5 (ENSMSIG00000012899) #20	1700066M21Rik (ENSMSIG00000012910) #21	Satb2 (ENSMSIG00000012940) #22	Hsfy2 (ENSMSIG00000013021)
Mouse	MODERN SPECIES		Orc2 (ENSMUSG00000026037) #8	Nif3l1 (ENSMUSG00000026036) #9	Ppil3 (ENSMUSG00000026035) #10	Clk1 (ENSMUSG00000026034) #11	Bzw1 (ENSMUSG00000051223) #13	Aox2 (ENSMUSG00000079554) #14	Aox4 (ENSMUSG00000038242) #15	Aox3 (ENSMUSG00000064294) #15	Aox1 (ENSMUSG00000063558) #16	Sgo2a (ENSMUSG00000026039)	Kctd18 (ENSMUSG00000054770) #17	Spats2l (ENSMUSG00000038305) #18	Maip1 (ENSMUSG00000025971) #19	Tyw5 (ENSMUSG00000048495) #20	1700066M21Rik (ENSMUSG00000038323) #21	Satb2 (ENSMUSG00000038331) #22	Hsfy2 (ENSMUSG00000045336)	Plcl1 (ENSMUSG00000038349) #23	Boll (ENSMUSG00000025977) #24	Mars2 (ENSMUSG00000046994)	Rftn2 (ENSMUSG00000025978) #25	Mob4 (ENSMUSG00000025979) #26	Hspe1 (ENSMUSG00000073676) ##28	Hspd1 (ENSMUSG00000025980) ##29	Coq10b (ENSMUSG00000025981) #30	Sf3b1 (ENSMUSG00000025982) #31	Ankrd44 (ENSMUSG00000052331) #33	Pgap1 (ENSMUSG00000073678) #36	Gm34066 (ENSMUSG00000109809)	Gtf3c3 (ENSMUSG00000041303) #37	Ccdc150 (ENSMUSG00000025983)
Ryukyu mouse	MODERN SPECIES		Nif3l1 (MGP_CAROLIEiJ_G0014165) #9	Ppil3 (MGP_CAROLIEiJ_G0014164) #10	Clk1 (MGP_CAROLIEiJ_G0014163) #11	Bzw1 (MGP_CAROLIEiJ_G0014162) #13	Aox2 (MGP_CAROLIEiJ_G0014161) #14	Aox4 (MGP_CAROLIEiJ_G0014160) #15	Aox3 (MGP_CAROLIEiJ_G0014159) #15	Aox1 (MGP_CAROLIEiJ_G0014158) #16	MGP_CAROLIEiJ_G0014157	MGP_CAROLIEiJ_G0014156	Kctd18 (MGP_CAROLIEiJ_G0014155) #17	Spats2l (MGP_CAROLIEiJ_G0014154) #18	Maip1 (MGP_CAROLIEiJ_G0014153) #19	Tyw5 (MGP_CAROLIEiJ_G0014152) #20	1700066M21Rik (MGP_CAROLIEiJ_G0014151) #21	Satb2 (MGP_CAROLIEiJ_G0014150) #22	Hsfy2 (MGP_CAROLIEiJ_G0014149)	Plcl1 (MGP_CAROLIEiJ_G0014148) #23	Mars2 (MGP_CAROLIEiJ_G0014147)	Rftn2 (MGP_CAROLIEiJ_G0014146) #25	Mob4 (MGP_CAROLIEiJ_G0014145) #26	MGP_CAROLIEiJ_G0014144 ##28	Hspd1 (MGP_CAROLIEiJ_G0014143) ##29	Coq10b (MGP_CAROLIEiJ_G0014142) #30	Sf3b1 (MGP_CAROLIEiJ_G0014141) #31	Ankrd44 (MGP_CAROLIEiJ_G0014140) #33	Pgap1 (MGP_CAROLIEiJ_G0014139) #36	MGP_CAROLIEiJ_G0014138 #37	Ccdc150 (MGP_CAROLIEiJ_G0014137)	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)
Shrew mouse	MODERN SPECIES	18	Hycc2 (MGP_PahariEiJ_G0027405)	Orc2 (MGP_PahariEiJ_G0027404) #8	Nif3l1 (MGP_PahariEiJ_G0027403) #9	Ppil3 (MGP_PahariEiJ_G0027402) #10	Clk1 (MGP_PahariEiJ_G0027401) #11	Bzw1 (MGP_PahariEiJ_G0027400) #13	Aox4 (MGP_PahariEiJ_G0027399) #15	Aox3 (MGP_PahariEiJ_G0027398) #15	Aox1 (MGP_PahariEiJ_G0027397) #16	Sgo2a (MGP_PahariEiJ_G0027396)	Kctd18 (MGP_PahariEiJ_G0027395) #17	Spats2l (MGP_PahariEiJ_G0027394) #18	Maip1 (MGP_PahariEiJ_G0027393) #19	Tyw5 (MGP_PahariEiJ_G0027392) #20	1700066M21Rik (MGP_PahariEiJ_G0027391) #21	Satb2 (MGP_PahariEiJ_G0027390) #22	Hsfy2 (MGP_PahariEiJ_G0027389)	Plcl1 (MGP_PahariEiJ_G0027388) #23	Boll (MGP_PahariEiJ_G0027387) #24	Mars2 (MGP_PahariEiJ_G0027386)	Rftn2 (MGP_PahariEiJ_G0027385) #25	MGP_PahariEiJ_G0027384 #26	MGP_PahariEiJ_G0027383 ##28	MGP_PahariEiJ_G0027382 ##29	Coq10b (MGP_PahariEiJ_G0027381) #30	Ankrd44 (MGP_PahariEiJ_G0027379) #33	Pgap1 (MGP_PahariEiJ_G0027378) #36	Gtf3c3 (MGP_PahariEiJ_G0027377) #37	Ccdc150 (MGP_PahariEiJ_G0027376)	Hecw2 (MGP_PahariEiJ_G0027375)	Stk17b (MGP_PahariEiJ_G0027374)
Rat	MODERN SPECIES	19	Orc2 (ENSRNOG00000012558) #8	Nif3l1 (ENSRNOG00000013446) #9	Ppil3 (ENSRNOG00000013636)	Clk1 (ENSRNOG00000025768) #11	Bzw1 (ENSRNOG00000013977) #13	Aox2 (ENSRNOG00000033923) #14	ENSRNOG00000068995	Aox3 (ENSRNOG00000014555) #15	Aox1 (ENSRNOG00000015354) #16	Sgo2 (ENSRNOG00000027035)	Kctd18 (ENSRNOG00000027091) #17	Spats2l (ENSRNOG00000016012) #18	Maip1 (ENSRNOG00000015983) #19	Tyw5 (ENSRNOG00000010100) #20	RGD1306941 (ENSRNOG00000010185) #21	Satb2 (ENSRNOG00000010188) #22	Hsfy2 (ENSRNOG00000038569)	Plcl1 (ENSRNOG00000032659) #23	Boll (ENSRNOG00000054379) #24	Mars2 (ENSRNOG00000065339)	AABR07067762.1 (ENSRNOG00000055383)	Rftn2 (ENSRNOG00000015594) #25	Mob4 (ENSRNOG00000014980) #26	Hspe1 (ENSRNOG00000051624) ##28	Hspd1 (ENSRNOG00000014525) ##29	Coq10b (ENSRNOG00000014456) #30	Sf3b1 (ENSRNOG00000013516) #31	Tmem258b (ENSRNOG00000032740)	Ankrd44 (ENSRNOG00000021384) #33	Pgap1 (ENSRNOG00000013388) #36	LOC686030 (ENSRNOG00000067303)
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b.w.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.b ##28	ENSGT00390000005727.a.b.b.w.a ##29	ENSGT00390000005727.a.b.b.w.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Chinese hamster chok1gshd	MODERN SPECIES	1	Orc2 (ENSCGRG00001016911) #8	ENSCGRG00001018137 #9	Ppil3 (ENSCGRG00001021470) #10	Clk1 (ENSCGRG00001018410) #11	Bzw1 (ENSCGRG00001017178) #13	Aox2 (ENSCGRG00001017735) #14	Aox4 (ENSCGRG00001016089) #15	Aox3 (ENSCGRG00001016559) #15	Aox1 (ENSCGRG00001018485) #16	ENSCGRG00001016045	Kctd18 (ENSCGRG00001016666) #17	Spats2l (ENSCGRG00001019123) #18	Maip1 (ENSCGRG00001018639) #19	Tyw5 (ENSCGRG00001015297) #20	1700066M21Rik (ENSCGRG00001016585) #21	Satb2 (ENSCGRG00001019669) #22	Hsfy2 (ENSCGRG00001009926)	ENSCGRG00001010393	Plcl1 (ENSCGRG00001015676) #23	ENSCGRG00001009537	Boll (ENSCGRG00001020168) #24	Mars2 (ENSCGRG00001010364)	Rftn2 (ENSCGRG00001017788) #25	Mob4 (ENSCGRG00001024203) #26	ENSCGRG00001015345 ##28	HSPD1 (ENSCGRG00001021126) ##29	Coq10b (ENSCGRG00001015271) #30	Sf3b1 (ENSCGRG00001016990) #31	Ankrd44 (ENSCGRG00001018584) #33	Pgap1 (ENSCGRG00001016707) #36	Gtf3c3 (ENSCGRG00001014543) #37
Golden Hamster	MODERN SPECIES	723									Aox1 (ENSMAUG00000014270) #16	ENSMAUG00000000248	Kctd18 (ENSMAUG00000019856) #17	Spats2l (ENSMAUG00000016921) #18	Maip1 (ENSMAUG00000007424) #19	Tyw5 (ENSMAUG00000009449) #20	1700066M21Rik (ENSMAUG00000017438) #21	Satb2 (ENSMAUG00000008545) #22	Plcl1 (ENSMAUG00000003415) #23	Boll (ENSMAUG00000008224) #24	Mars2 (ENSMAUG00000017224)	Rftn2 (ENSMAUG00000014348) #25	ENSMAUG00000007042 #26	ENSMAUG00000017789 ##29	Coq10b (ENSMAUG00000010644) #30	Sf3b1 (ENSMAUG00000009071) #31	Ankrd44 (ENSMAUG00000019633) #33	Pgap1 (ENSMAUG00000018155) #36	Gtf3c3 (ENSMAUG00000018770) #37	Ccdc150 (ENSMAUG00000015624)	Hecw2 (ENSMAUG00000011882)	Stk17b (ENSMAUG00000018862)	ENSMAUG00000020218
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT00390000006350.m.a.c.a.`b ##28	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a.ab ##28	ENSGT00390000005727.a.b.b.w.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37
Prairie vole	MODERN SPECIES	91	Hycc2 (ENSMOCG00000012367)	Orc2 (ENSMOCG00000016158) #8	Nif3l1 (ENSMOCG00000012327) #9	ENSMOCG00000013096 #10	ENSMOCG00000005608 #11	Bzw1 (ENSMOCG00000008375) #13	Aox2 (ENSMOCG00000018237) #14	Aox4 (ENSMOCG00000015766) #15	Aox1 (ENSMOCG00000001195) #16	ENSMOCG00000012099	Kctd18 (ENSMOCG00000018835) #17	Spats2l (ENSMOCG00000006136) #18	Maip1 (ENSMOCG00000008182) #19	Tyw5 (ENSMOCG00000018540) #20	1700066M21Rik (ENSMOCG00000018970) #21	ENSMOCG00000005756 #22	Hsfy2 (ENSMOCG00000013974)	Plcl1 (ENSMOCG00000014862) #23	Boll (ENSMOCG00000022824) #24	Mars2 (ENSMOCG00000006676)	Rftn2 (ENSMOCG00000020060) #25	ENSMOCG00000000253 ##28	Mob4 (ENSMOCG00000020652) #26	ENSMOCG00000002787 ##29	Coq10b (ENSMOCG00000012636) #30	Sf3b1 (ENSMOCG00000000455) #31	ENSMOCG00000021330 #33	Pgap1 (ENSMOCG00000013936) #36	Gtf3c3 (ENSMOCG00000019654) #37	Ccdc150 (ENSMOCG00000001399)	Hecw2 (ENSMOCG00000012140)
Northern American deer mouse	MODERN SPECIES	4	Hycc2 (ENSPEMG00000014604)	Orc2 (ENSPEMG00000010035) #8	Nif3l1 (ENSPEMG00000023040) #9	Ppil3 (ENSPEMG00000011585) #10	Clk1 (ENSPEMG00000022508) #11	ENSPEMG00000013940 #13	Aox2 (ENSPEMG00000022861) #14	ENSPEMG00000027085 #15	Aox1 (ENSPEMG00000000656) #16	ENSPEMG00000020091	Kctd18 (ENSPEMG00000028635) #17	Spats2l (ENSPEMG00000020003) #18	Maip1 (ENSPEMG00000015287) #19	Tyw5 (ENSPEMG00000009506) #20	1700066M21Rik (ENSPEMG00000001657) #21	Satb2 (ENSPEMG00000013811) #22	Hsfy2 (ENSPEMG00000029057)	Plcl1 (ENSPEMG00000001849) #23	ENSPEMG00000024520	Boll (ENSPEMG00000018168) #24	Mars2 (ENSPEMG00000008377)	Rftn2 (ENSPEMG00000000048) #25	Mob4 (ENSPEMG00000017361) #26	ENSPEMG00000029712	ENSPEMG00000010504 ##28	Hspd1 (ENSPEMG00000015411) ##29	Coq10b (ENSPEMG00000005817) #30	Sf3b1 (ENSPEMG00000010699) #31	Ankrd44 (ENSPEMG00000016873) #33	Pgap1 (ENSPEMG00000008939) #36	ENSPEMG00000024521
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Rabbit	MODERN SPECIES	18	PPIL3 (ENSOCUG00000010661) #10	CLK1 (ENSOCUG00000010653) #11	ENSOCUG00000010647 #13	ENSOCUG00000026480 #14	ENSOCUG00000024593 #15	ENSOCUG00000035654 #15	AOX1 (ENSOCUG00000013971) #16	ENSOCUG00000000547	ENSOCUG00000037416	KCTD18 (ENSOCUG00000011556) #17	SPATS2L (ENSOCUG00000011549) #18	ENSOCUG00000017946 #19	ENSOCUG00000035705 #20	ENSOCUG00000016464 #20	C2orf69 (ENSOCUG00000016473) #21	SATB2 (ENSOCUG00000009700) #22	PLCL1 (ENSOCUG00000013978) #23	BOLL (ENSOCUG00000013979) #24	MARS2 (ENSOCUG00000017798)	RFTN2 (ENSOCUG00000003993) #25	ENSOCUG00000005712 #26	HSPE1 (ENSOCUG00000010360) ##28	HSPD1 (ENSOCUG00000012736) #29	COQ10B (ENSOCUG00000012735) #30	ENSOCUG00000000205	ENSOCUG00000029492 #31	ENSOCUG00000012722 #31	ANKRD44 (ENSOCUG00000009183) #33	PGAP1 (ENSOCUG00000002192) #36	C2orf66 (ENSOCUG00000028999)	GTF3C3 (ENSOCUG00000000463) #37
Pika	MODERN SPECIES	573													MAIP1 (ENSOPRG00000004142) #19	TYW5 (ENSOPRG00000004133) #20	C2orf69 (ENSOPRG00000004115) #21	SATB2 (ENSOPRG00000003979) #22
Tree shrew	MODERN SPECIES	795																SATB2 (ENSTBEG00000002443) #22
Primates	ANCESTRAL SPECIES	13	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.b ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.a.c.a.mb ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb.a.a ##28	ENSGT00390000005727.a.b.a.b.c.b.a #29	ENSGT00390000006350.m.a.c.a.mb.b ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb.a.a ##28	ENSGT00390000005727.a.b.a.b.c.b.a #29	ENSGT00390000006350.m.a.c.a.mb.b ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb.a.a ##28	ENSGT00390000006350.m.a.c.a.mb.b ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Gorilla	MODERN SPECIES	15	HYCC2 (ENSGGOG00000039554)	ORC2 (ENSGGOG00000014070) #8	NIF3L1 (ENSGGOG00000014060) #9	PPIL3 (ENSGGOG00000022268) #10	CLK1 (ENSGGOG00000016192) #11	BZW1 (ENSGGOG00000016296) #13	AOX1 (ENSGGOG00000006140) #16	SGO2 (ENSGGOG00000038921)	KCTD18 (ENSGGOG00000014079) #17	SPATS2L (ENSGGOG00000005917) #18	MAIP1 (ENSGGOG00000005661) #19	TYW5 (ENSGGOG00000041719) #20	C2orf69 (ENSGGOG00000005649) #21	FTCDNL1 (ENSGGOG00000040488)	ENSGGOG00000044011	SATB2 (ENSGGOG00000014123) #22	PLCL1 (ENSGGOG00000001959) #23	BOLL (ENSGGOG00000013594) #24	MARS2 (ENSGGOG00000034895)	RFTN2 (ENSGGOG00000009318) #25	MOB4 (ENSGGOG00000036779) ##26	HSPE1 (ENSGGOG00000027944) ##28	HSPD1 (ENSGGOG00000008267) #29	COQ10B (ENSGGOG00000039158) #30	SF3B1 (ENSGGOG00000009264) #31	ENSGGOG00000038007	ANKRD44 (ENSGGOG00000014558) #33	PGAP1 (ENSGGOG00000001785) #36	C2orf66 (ENSGGOG00000038009)	GTF3C3 (ENSGGOG00000011787) #37	CCDC150 (ENSGGOG00000010004)
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb.a.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Human	MODERN SPECIES	11	NDUFB3 (ENSG00000119013)	HYCC2 (ENSG00000155744)	ORC2 (ENSG00000115942) #8	NIF3L1 (ENSG00000196290) #9	PPIL3 (ENSG00000240344) #10	CLK1 (ENSG00000013441) #11	BZW1 (ENSG00000082153) #13	AOX1 (ENSG00000138356) #16	SGO2 (ENSG00000163535)	KCTD18 (ENSG00000155729) #17	SPATS2L (ENSG00000196141) #18	MAIP1 (ENSG00000162972) #19	TYW5 (ENSG00000162971) #20	C2orf69 (ENSG00000178074) #21	FTCDNL1 (ENSG00000226124)	SATB2 (ENSG00000119042) #22	PLCL1 (ENSG00000115896) #23	BOLL (ENSG00000152430) #24	MARS2 (ENSG00000247626)	RFTN2 (ENSG00000162944) #25	MOB4 (ENSG00000115540) ##26	HSPE1-MOB4 (ENSG00000270757)	HSPE1 (ENSG00000115541) ##28	HSPD1 (ENSG00000144381) #29	COQ10B (ENSG00000115520) #30	SF3B1 (ENSG00000115524) #31	ANKRD44 (ENSG00000065413) #33	PGAP1 (ENSG00000197121) #36	C2orf66 (ENSG00000187944)	GTF3C3 (ENSG00000119041) #37	CCDC150 (ENSG00000144395)
Pan	ANCESTRAL SPECIES	12	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb.a.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Chimpanzee	MODERN SPECIES	15	ORC2 (ENSPTRG00000012795) #8	NIF3L1 (ENSPTRG00000012794) #9	PPIL3 (ENSPTRG00000012793) #10	CLK1 (ENSPTRG00000012792) #11	BZW1 (ENSPTRG00000012791) #13	ENSPTRG00000044647 #14	AOX1 (ENSPTRG00000012790) #16	SGO2 (ENSPTRG00000022953)	KCTD18 (ENSPTRG00000012787) #17	SPATS2L (ENSPTRG00000012785) #18	MAIP1 (ENSPTRG00000012784) #19	TYW5 (ENSPTRG00000012783) #20	C2orf69 (ENSPTRG00000012782) #21	FTCDNL1 (ENSPTRG00000047502)	ENSPTRG00000050460	SATB2 (ENSPTRG00000012779) #22	PLCL1 (ENSPTRG00000012778) #23	BOLL (ENSPTRG00000012777) #24	MARS2 (ENSPTRG00000047853)	RFTN2 (ENSPTRG00000012776) #25	MOB4 (ENSPTRG00000012775) ##26	HSPE1 (ENSPTRG00000012774) ##28	HSPD1 (ENSPTRG00000044665) #29	COQ10B (ENSPTRG00000012772) #30	SF3B1 (ENSPTRG00000012771) #31	ENSPTRG00000049270	ANKRD44 (ENSPTRG00000012770) #33	PGAP1 (ENSPTRG00000012769) #36	C2BH2orf66 (ENSPTRG00000012768)	GTF3C3 (ENSPTRG00000012767) #37	CCDC150 (ENSPTRG00000012765)
Bonobo	MODERN SPECIES	15	ORC2 (ENSPPAG00000030211) #8	NIF3L1 (ENSPPAG00000043491) #9	PPIL3 (ENSPPAG00000039183) #10	CLK1 (ENSPPAG00000036957) #11	BZW1 (ENSPPAG00000027971) #13	ENSPPAG00000030893 #14	AOX1 (ENSPPAG00000000241) #16	SGO2 (ENSPPAG00000000061)	KCTD18 (ENSPPAG00000038865) #17	SPATS2L (ENSPPAG00000036160) #18	MAIP1 (ENSPPAG00000026692) #19	TYW5 (ENSPPAG00000027150) #20	C2orf69 (ENSPPAG00000035529) #21	FTCDNL1 (ENSPPAG00000020283)	ENSPPAG00000039843	SATB2 (ENSPPAG00000044026) #22	PLCL1 (ENSPPAG00000042453) #23	BOLL (ENSPPAG00000033757) #24	MARS2 (ENSPPAG00000007220)	RFTN2 (ENSPPAG00000026815) #25	MOB4 (ENSPPAG00000044023) ##26	ENSPPAG00000023895 ##28	HSPD1 (ENSPPAG00000038858) #29	COQ10B (ENSPPAG00000010452) #30	SF3B1 (ENSPPAG00000035007) #31	ENSPPAG00000043776	ENSPPAG00000042224	ANKRD44 (ENSPPAG00000033556) #33	PGAP1 (ENSPPAG00000039254) #36	C2orf66 (ENSPPAG00000029492)	GTF3C3 (ENSPPAG00000002745) #37
Orangutan	MODERN SPECIES	15	NDUFB3 (ENSPPYG00000013065)	HYCC2 (ENSPPYG00000029836)	ORC2 (ENSPPYG00000013064) #8	NIF3L1 (ENSPPYG00000013063) #9	ENSPPYG00000013062	CLK1 (ENSPPYG00000013061) #11	BZW1 (ENSPPYG00000035986) #13	AOX1 (ENSPPYG00000013058) #16	SGO2 (ENSPPYG00000013057)	KCTD18 (ENSPPYG00000030650) #17	SPATS2L (ENSPPYG00000013055) #18	MAIP1 (ENSPPYG00000035692) #19	TYW5 (ENSPPYG00000033416) #20	C2orf69 (ENSPPYG00000013054) #21	FTCDNL1 (ENSPPYG00000033061)	SATB2 (ENSPPYG00000013052) #22	PLCL1 (ENSPPYG00000039108) #23	BOLL (ENSPPYG00000037688) #24	MARS2 (ENSPPYG00000013049)	ENSPPYG00000041557	RFTN2 (ENSPPYG00000013048) #25	MOB4 (ENSPPYG00000013047) ##26	HSPE1 (ENSPPYG00000025876) ##28	HSPD1 (ENSPPYG00000013046) #29	COQ10B (ENSPPYG00000039065) #30	SF3B1 (ENSPPYG00000013044) #31	ANKRD44 (ENSPPYG00000013043) #33	PGAP1 (ENSPPYG00000013042) #36	C2orf66 (ENSPPYG00000037735)	GTF3C3 (ENSPPYG00000013040) #37	CCDC150 (ENSPPYG00000013039)
Gibbon	MODERN SPECIES	14	HYCC2 (ENSNLEG00000006941)	ORC2 (ENSNLEG00000006938) #8	NIF3L1 (ENSNLEG00000006935) #9	PPIL3 (ENSNLEG00000034236) #10	CLK1 (ENSNLEG00000032526) #11	BZW1 (ENSNLEG00000006929) #13	ENSNLEG00000029066 #14	AOX1 (ENSNLEG00000006920) #16	SGO2 (ENSNLEG00000006913)	KCTD18 (ENSNLEG00000006912) #17	SPATS2L (ENSNLEG00000006905) #18	MAIP1 (ENSNLEG00000029234) #19	TYW5 (ENSNLEG00000031551) #20	C2orf69 (ENSNLEG00000031645) #21	FTCDNL1 (ENSNLEG00000029410)	SATB2 (ENSNLEG00000006893) #22	PLCL1 (ENSNLEG00000006890) #23	BOLL (ENSNLEG00000006885) #24	MARS2 (ENSNLEG00000018752)	RFTN2 (ENSNLEG00000006883) #25	MOB4 (ENSNLEG00000006881) ##26	ENSNLEG00000030370 ##28	ENSNLEG00000006874 #29	ENSNLEG00000029205	COQ10B (ENSNLEG00000006871) #30	SF3B1 (ENSNLEG00000006861) #31	ANKRD44 (ENSNLEG00000006855) #33	PGAP1 (ENSNLEG00000006849) #36	C2orf66 (ENSNLEG00000006848)	GTF3C3 (ENSNLEG00000006837) #37	ENSNLEG00000006833
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b ##28	ENSGT00390000006350.m.a.c.a.mb ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468
Vervet Monkey	MODERN SPECIES	1	HYCC2 (ENSCSAG00000010815)	ORC2 (ENSCSAG00000010834) #8	NIF3L1 (ENSCSAG00000010842) #9	PPIL3 (ENSCSAG00000010852) #10	CLK1 (ENSCSAG00000010924) #11	BZW1 (ENSCSAG00000010957) #13	ENSCSAG00000011187 #14	AOX1 (ENSCSAG00000011276) #16	SGO2 (ENSCSAG00000011303)	KCTD18 (ENSCSAG00000011318) #17	SPATS2L (ENSCSAG00000011326) #18	MAIP1 (ENSCSAG00000011334) #19	TYW5 (ENSCSAG00000011351) #20	C2orf69 (ENSCSAG00000011358) #21	FTCDNL1 (ENSCSAG00000011372)	SATB2 (ENSCSAG00000011380) #22	PLCL1 (ENSCSAG00000011391) #23	BOLL (ENSCSAG00000011399) #24	MARS2 (ENSCSAG00000018765)	RFTN2 (ENSCSAG00000011411) #25	MOB4 (ENSCSAG00000011421) ##26	ENSCSAG00000011427 ##28	HSPD1 (ENSCSAG00000011463) #29	COQ10B (ENSCSAG00000011483) #30	SF3B1 (ENSCSAG00000011505) #31	ENSCSAG00000011517	ANKRD44 (ENSCSAG00000011536) #33	PGAP1 (ENSCSAG00000011561) #36	C2orf66 (ENSCSAG00000011573)	GTF3C3 (ENSCSAG00000011582) #37	CCDC150 (ENSCSAG00000011637)
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36
Pig-tailed macaque	MODERN SPECIES	409	NIF3L1 (ENSMNEG00000040987) #9	PPIL3 (ENSMNEG00000032202) #10	CLK1 (ENSMNEG00000031266) #11	BZW1 (ENSMNEG00000043638) #13	ENSMNEG00000045434 #14	ENSMNEG00000034841 #15	AOX1 (ENSMNEG00000024714) #16	SGO2 (ENSMNEG00000035682)	KCTD18 (ENSMNEG00000038609) #17	SPATS2L (ENSMNEG00000016309) #18	MAIP1 (ENSMNEG00000028494) #19	TYW5 (ENSMNEG00000030303) #20	C2orf69 (ENSMNEG00000035266) #21	FTCDNL1 (ENSMNEG00000037918)	ENSMNEG00000040066	SATB2 (ENSMNEG00000043012) #22	PLCL1 (ENSMNEG00000019208) #23	BOLL (ENSMNEG00000033015) #24	MARS2 (ENSMNEG00000019593)	RFTN2 (ENSMNEG00000033769) #25	ENSMNEG00000033689	MOB4 (ENSMNEG00000033188) ##26	ENSMNEG00000039279 ##28	ENSMNEG00000043358	COQ10B (ENSMNEG00000032409) #30	SF3B1 (ENSMNEG00000042333) #31	ENSMNEG00000036998	ANKRD44 (ENSMNEG00000043273) #33	ENSMNEG00000045145	PGAP1 (ENSMNEG00000033082) #36	C2orf66 (ENSMNEG00000038376)
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.d #26	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a.e #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468
Crab-eating macaque	MODERN SPECIES	3	HYCC2 (ENSMFAG00000032144)	ORC2 (ENSMFAG00000040620) #8	NIF3L1 (ENSMFAG00000003012) #9	PPIL3 (ENSMFAG00000038708) #10	CLK1 (ENSMFAG00000030719) #11	BZW1 (ENSMFAG00000020809) #13	ENSMFAG00000034555 #14	AOX1 (ENSMFAG00000036889) #16	SGO2 (ENSMFAG00000041855)	KCTD18 (ENSMFAG00000037300) #17	SPATS2L (ENSMFAG00000003450) #18	MAIP1 (ENSMFAG00000045074) #19	TYW5 (ENSMFAG00000004016) #20	C2orf69 (ENSMFAG00000032268) #21	ENSMFAG00000038094	SATB2 (ENSMFAG00000035983) #22	PLCL1 (ENSMFAG00000038838) #23	BOLL (ENSMFAG00000030962) #24	MARS2 (ENSMFAG00000012275)	ENSMFAG00000003051	RFTN2 (ENSMFAG00000003082) #25	ENSMFAG00000035530 ##26	ENSMFAG00000045023 ##28	ENSMFAG00000033000 #29	COQ10B (ENSMFAG00000017910) #30	ENSMFAG00000045829	SF3B1 (ENSMFAG00000036680) #31	ENSMFAG00000057968	ENSMFAG00000057322	ANKRD44 (ENSMFAG00000032694) #33	PGAP1 (ENSMFAG00000029122) #36
Rhesus	MODERN SPECIES	3	ORC2 (ENSMMUG00000014460) #8	NIF3L1 (ENSMMUG00000006639) #9	PPIL3 (ENSMMUG00000006638)	CLK1 (ENSMMUG00000006640) #11	BZW1 (ENSMMUG00000022202) #13	AOX2 (ENSMMUG00000005835) #14	AOX4 (ENSMMUG00000047974) #15	AOX1 (ENSMMUG00000021931) #16	SGO2 (ENSMMUG00000052913)	KCTD18 (ENSMMUG00000008102) #17	SPATS2L (ENSMMUG00000008101) #18	MAIP1 (ENSMMUG00000023168) #19	TYW5 (ENSMMUG00000023167) #20	C12H2orf69 (ENSMMUG00000041535) #21	FTCDNL1 (ENSMMUG00000031310)	SATB2 (ENSMMUG00000046254) #22	ENSMMUG00000059853	PLCL1 (ENSMMUG00000012822) #23	BOLL (ENSMMUG00000023811) #24	MARS2 (ENSMMUG00000023810)	RFTN2 (ENSMMUG00000023809) #25	HSPE1 (ENSMMUG00000016547) #26	HSPD1 (ENSMMUG00000010489) #29	COQ10B (ENSMMUG00000056418) #30	ENSMMUG00000058328	SF3B1 (ENSMMUG00000022430) #31	ANKRD44 (ENSMMUG00000022425) #33	PGAP1 (ENSMMUG00000043369) #36	C2H2orf66 (ENSMMUG00000054516)	GTF3C3 (ENSMMUG00000008643) #37	CCDC150 (ENSMMUG00000015970)
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36
Olive baboon	MODERN SPECIES	1	ORC2 (ENSPANG00000034347) #8	NIF3L1 (ENSPANG00000025493) #9	ENSPANG00000009683	CLK1 (ENSPANG00000015580) #11	BZW1 (ENSPANG00000016459) #13	AOX2 (ENSPANG00000016460) #14	AOX4 (ENSPANG00000024540) #15	AOX1 (ENSPANG00000015933) #16	SGO2 (ENSPANG00000021922)	KCTD18 (ENSPANG00000021439) #17	SPATS2L (ENSPANG00000008482) #18	TYW5 (ENSPANG00000009235) #20	C2orf69 (ENSPANG00000040521) #21	ENSPANG00000044612	ENSPANG00000031615	SATB2 (ENSPANG00000011212) #22	ENSPANG00000050725	PLCL1 (ENSPANG00000000848) #23	BOLL (ENSPANG00000009570) #24	ENSPANG00000042310	MARS2 (ENSPANG00000016544)	RFTN2 (ENSPANG00000009899) #25	MOB4 (ENSPANG00000016215) ##26	ENSPANG00000046137 ##28	ENSPANG00000029555 #29	COQ10B (ENSPANG00000006879) #30	ENSPANG00000037062	SF3B1 (ENSPANG00000013417) #31	ENSPANG00000016748	ENSPANG00000037191	ENSPANG00000048684
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.b.a.b.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36
Drill	MODERN SPECIES	457	PPIL3 (ENSMLEG00000039054) #10	CLK1 (ENSMLEG00000029735) #11	BZW1 (ENSMLEG00000018894) #13	ENSMLEG00000016360 #14	ENSMLEG00000013006 #15	AOX1 (ENSMLEG00000039204) #16	SGO2 (ENSMLEG00000039520)	KCTD18 (ENSMLEG00000042319) #17	SPATS2L (ENSMLEG00000037145) #18	ENSMLEG00000036074	MAIP1 (ENSMLEG00000041626) #19	TYW5 (ENSMLEG00000038351) #20	C2orf69 (ENSMLEG00000015699) #21	FTCDNL1 (ENSMLEG00000042066)	ENSMLEG00000042892	SATB2 (ENSMLEG00000037435) #22	PLCL1 (ENSMLEG00000042517) #23
Sooty mangabey	MODERN SPECIES	570	NIF3L1 (ENSCATG00000030966) #9	PPIL3 (ENSCATG00000031187) #10	CLK1 (ENSCATG00000030802) #11	BZW1 (ENSCATG00000032512) #13	ENSCATG00000019918 #14	ENSCATG00000042053 #15	AOX1 (ENSCATG00000033826) #16	SGO2 (ENSCATG00000027226)	KCTD18 (ENSCATG00000044706) #17	SPATS2L (ENSCATG00000008807) #18	MAIP1 (ENSCATG00000036858) #19	TYW5 (ENSCATG00000033078) #20	C2orf69 (ENSCATG00000031233) #21	FTCDNL1 (ENSCATG00000018934)	ENSCATG00000044312	SATB2 (ENSCATG00000017161) #22	PLCL1 (ENSCATG00000014153) #23	BOLL (ENSCATG00000004430) #24	MARS2 (ENSCATG00000001827)	GLUD2 (ENSCATG00000044639)	RFTN2 (ENSCATG00000031580) #25	MOB4 (ENSCATG00000002964) ##26	ENSCATG00000022859 ##28	HSPD1 (ENSCATG00000044175) #29	COQ10B (ENSCATG00000031857) #30	ENSCATG00000031238	SF3B1 (ENSCATG00000035735) #31	ENSCATG00000040754	ENSCATG00000039142	ANKRD44 (ENSCATG00000034086) #33	PGAP1 (ENSCATG00000041899) #36
Rhinopithecus	ANCESTRAL SPECIES	83	ENSGT00940000163579	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a.a ##26	ENSGT00390000006350.m.a.c.a.mb ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367.w #30	ENSGT00390000018393 #31	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468
Black snub-nosed monkey	MODERN SPECIES	1955												MAIP1 (ENSRBIG00000010133) #19	TYW5 (ENSRBIG00000039190) #20	C2orf69 (ENSRBIG00000038270) #21	ENSRBIG00000040998	SATB2 (ENSRBIG00000026956) #22	PLCL1 (ENSRBIG00000030591) #23
Golden snub-nosed monkey	MODERN SPECIES	676	ENSRROG00000029517	CLK1 (ENSRROG00000035273) #11	BZW1 (ENSRROG00000044305) #13	ENSRROG00000043595 #14	ENSRROG00000034026 #15	AOX1 (ENSRROG00000043118) #16	SGO2 (ENSRROG00000037302)	KCTD18 (ENSRROG00000043788) #17	SPATS2L (ENSRROG00000041208) #18	ENSRROG00000043858	ENSRROG00000040812 #19	TYW5 (ENSRROG00000033012) #20	C2orf69 (ENSRROG00000028208) #21	FTCDNL1 (ENSRROG00000042811)	ENSRROG00000032256	SATB2 (ENSRROG00000044735) #22
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234.c #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.b.b ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234.c #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.a.c.b.a.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234.c #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00390000006350.m.a.c.b.a.a ##28	ENSGT00390000005727.a.b.a.b.c.a.a #29	ENSGT00940000155367 #30	ENSGT00950000183198.c.a.a.b	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Bolivian squirrel monkey	MODERN SPECIES	56	HYCC2 (ENSSBOG00000033197)	ENSSBOG00000025751 #8	NIF3L1 (ENSSBOG00000034561) #9	ENSSBOG00000028593	CLK1 (ENSSBOG00000031614) #11	BZW1 (ENSSBOG00000020710) #13	ENSSBOG00000034034 #14	AOX1 (ENSSBOG00000032424) #16	SGO2 (ENSSBOG00000035222)	KCTD18 (ENSSBOG00000031520) #17	SPATS2L (ENSSBOG00000031853) #18	MAIP1 (ENSSBOG00000033061) #19	TYW5 (ENSSBOG00000020625) #20	C2orf69 (ENSSBOG00000031239) #21	FTCDNL1 (ENSSBOG00000021980)	SATB2 (ENSSBOG00000028702) #22	ENSSBOG00000007950	PLCL1 (ENSSBOG00000033477) #23	BOLL (ENSSBOG00000027161) #24	MARS2 (ENSSBOG00000016226)	RFTN2 (ENSSBOG00000031373) #25	MOB4 (ENSSBOG00000023092) ##26	ENSSBOG00000024433	ENSSBOG00000027158 ##28	HSPD1 (ENSSBOG00000034003) #29	COQ10B (ENSSBOG00000021591) #30	ENSSBOG00000024424	SF3B1 (ENSSBOG00000020080) #31	ANKRD44 (ENSSBOG00000020670) #33	PGAP1 (ENSSBOG00000019868) #36	C2orf66 (ENSSBOG00000021609)
Capuchin	MODERN SPECIES	178	FAM126B (ENSCCAG00000029565)	ORC2 (ENSCCAG00000000270) #8	NIF3L1 (ENSCCAG00000020100) #9	PPIL3 (ENSCCAG00000019393) #10	CLK1 (ENSCCAG00000021387) #11	BZW1 (ENSCCAG00000012616) #13	ENSCCAG00000028426 #14	AOX1 (ENSCCAG00000025414) #16	SGO2 (ENSCCAG00000032369)	KCTD18 (ENSCCAG00000023011) #17	SPATS2L (ENSCCAG00000033886) #18	MAIP1 (ENSCCAG00000012313) #19	TYW5 (ENSCCAG00000030363) #20	C2orf69 (ENSCCAG00000025235) #21	ENSCCAG00000027889	SATB2 (ENSCCAG00000028159) #22	PLCL1 (ENSCCAG00000008545) #23	BOLL (ENSCCAG00000026623) #24	MARS2 (ENSCCAG00000019937)	ENSCCAG00000037834	RFTN2 (ENSCCAG00000034642) #25	MOB4 (ENSCCAG00000026299) ##26	ENSCCAG00000018271 ##28	ENSCCAG00000028857 #29
Marmoset	MODERN SPECIES	18	CLK1 (ENSCJAG00000004319) #11	BZW1 (ENSCJAG00000004267) #13	ENSCJAG00000033419 #14	AOX1 (ENSCJAG00000004230) #16	SGO2 (ENSCJAG00000004216)	KCTD18 (ENSCJAG00000031173) #17	ENSCJAG00000085721 ##27	SPATS2L (ENSCJAG00000004173) #18	ENSCJAG00000083755	MAIP1 (ENSCJAG00000037075) #19	TYW5 (ENSCJAG00000004155) #20	C2orf69 (ENSCJAG00000004149) #21	ENSCJAG00000044172	ENSCJAG00000078875	ENSCJAG00000082819	SATB2 (ENSCJAG00000004111) #22	ENSCJAG00000055486	ENSCJAG00000085382	PLCL1 (ENSCJAG00000004100) #23	ENSCJAG00000070051	BOLL (ENSCJAG00000004092) #24	MARS2 (ENSCJAG00000022885)	ENSCJAG00000077720	RFTN2 (ENSCJAG00000058836) #25	MOB4 (ENSCJAG00000045626) ##26	ENSCJAG00000084245	ENSCJAG00000041512 ##28	HSPD1 (ENSCJAG00000003990) #29	COQ10B (ENSCJAG00000039085) #30	SF3B1 (ENSCJAG00000003902) #31	ANKRD44 (ENSCJAG00000003803) #33
Mas night monkey	MODERN SPECIES	492					CLK1 (ENSANAG00000027111) #11	BZW1 (ENSANAG00000021489) #13	ENSANAG00000023906 #14	AOX1 (ENSANAG00000025069) #16	SGO2 (ENSANAG00000030373)	KCTD18 (ENSANAG00000023292) #17	SPATS2L (ENSANAG00000029380) #18	MAIP1 (ENSANAG00000031625) #19	TYW5 (ENSANAG00000024108) #20	C2orf69 (ENSANAG00000022030) #21	ENSANAG00000023820	SATB2 (ENSANAG00000024206) #22	PLCL1 (ENSANAG00000022909) #23	BOLL (ENSANAG00000031449) #24	ENSANAG00000027174
Tarsier	MODERN SPECIES	4981																SATB2 (ENSTSYG00000002539) #22	LYG2 (ENSTSYG00000028650)	ENSTSYG00000029768	TXNDC9 (ENSTSYG00000033216)	EIF5B (ENSTSYG00000011850)	REV1 (ENSTSYG00000011917)	AFF3 (ENSTSYG00000029683)
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Bushbaby	MODERN SPECIES	128	HYCC2 (ENSOGAG00000012336)	ORC2 (ENSOGAG00000012329) #8	NIF3L1 (ENSOGAG00000025311) #9	PPIL3 (ENSOGAG00000007087) #10	CLK1 (ENSOGAG00000012328) #11	BZW1 (ENSOGAG00000012326) #13	AOX2 (ENSOGAG00000025249) #14	AOX4 (ENSOGAG00000030158) #15	AOX1 (ENSOGAG00000006066) #16	SGO2 (ENSOGAG00000006064)	KCTD18 (ENSOGAG00000012335) #17	SPATS2L (ENSOGAG00000012331) #18	MAIP1 (ENSOGAG00000006965) #19	C2orf69 (ENSOGAG00000028317) #21	ENSOGAG00000027028	SATB2 (ENSOGAG00000006949) #22
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.b ##26	ENSGT00390000006350.m.a.c.b.a.b ##28	ENSGT01050000244956.b.c.a ##26	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468
Mouse lemur	MODERN SPECIES	30	ENSMICG00000003372 #9	PPIL3 (ENSMICG00000003367) #10	CLK1 (ENSMICG00000003361) #11	BZW1 (ENSMICG00000003355) #13	ENSMICG00000033651 #14	ENSMICG00000027664 #15	AOX1 (ENSMICG00000005718) #16	SGO2 (ENSMICG00000033463)	ENSMICG00000003963 #17	SPATS2L (ENSMICG00000003956) #18	MAIP1 (ENSMICG00000044985) #19	TYW5 (ENSMICG00000046098) #20	C2orf69 (ENSMICG00000035511) #21	ENSMICG00000026608	ENSMICG00000037134	SATB2 (ENSMICG00000009378) #22	PLCL1 (ENSMICG00000011854) #23	BOLL (ENSMICG00000011845) #24	RFTN2 (ENSMICG00000028117) #25	ENSMICG00000037985 ##26	HSPD1 (ENSMICG00000028600) #29	HSPE1 (ENSMICG00000046768) ##28	COQ10B (ENSMICG00000013910) #30	SF3B1 (ENSMICG00000013879) #31	ANKRD44 (ENSMICG00000013853) #33	PGAP1 (ENSMICG00000013824) #36	C2orf66 (ENSMICG00000043136)	GTF3C3 (ENSMICG00000013800) #37	CCDC150 (ENSMICG00000013761)	HECW2 (ENSMICG00000013727)	STK17B (ENSMICG00000013716)
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.c.a ##26	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.a.b #29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Coquerels sifaka	MODERN SPECIES	94	NDUFB3 (ENSPCOG00000020529)	HYCC2 (ENSPCOG00000014611)	ORC2 (ENSPCOG00000021783) #8	NIF3L1 (ENSPCOG00000018022) #9	PPIL3 (ENSPCOG00000028235) #10	CLK1 (ENSPCOG00000018180) #11	ENSPCOG00000015831 #13	ENSPCOG00000015215 #14	ENSPCOG00000027597 #15	AOX1 (ENSPCOG00000021840) #16	ENSPCOG00000024135	SPATS2L (ENSPCOG00000015945) #18	MAIP1 (ENSPCOG00000008943) #19	C2orf69 (ENSPCOG00000006950) #21	FTCDNL1 (ENSPCOG00000019867)	ENSPCOG00000014379 #22
Greater bamboo lemur	MODERN SPECIES	225		MAK (ENSPSMG00000025468)	TMEM14C (ENSPSMG00000025455)	C6orf52 (ENSPSMG00000025442)	ENSPSMG00000025433	GCNT2 (ENSPSMG00000025432)	HNRNPA1L3 (ENSPSMG00000025423)	AOX1 (ENSPSMG00000025393) #16	SGO2 (ENSPSMG00000025322)	KCTD18 (ENSPSMG00000025316) #17	SPATS2L (ENSPSMG00000025292) #18	MAIP1 (ENSPSMG00000025245) #19	TYW5 (ENSPSMG00000025236) #20	C2orf69 (ENSPSMG00000025231) #21	FTCDNL1 (ENSPSMG00000025226)	SATB2 (ENSPSMG00000025213) #22	PLCL1 (ENSPSMG00000025179) #23	BOLL (ENSPSMG00000025166) #24	MARS2 (ENSPSMG00000025148)	RFTN2 (ENSPSMG00000025142) #25	ENSPSMG00000025134 ##26	ENSPSMG00000025114 ##28	ENSPSMG00000025102 #29	COQ10B (ENSPSMG00000025082) #30	SF3B1 (ENSPSMG00000025061) #31	ANKRD44 (ENSPSMG00000025023) #33	PGAP1 (ENSPSMG00000024985) #36	GTF3C3 (ENSPSMG00000024937) #37	CCDC150 (ENSPSMG00000024921)	HECW2 (ENSPSMG00000024894)	STK17B (ENSPSMG00000024880)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000008096.B #22
Common shrew	MODERN SPECIES	1424																SATB2 (ENSSARG00000014343) #22
Hedgehog	MODERN SPECIES	2008																SATB2 (ENSEEUG00000014569) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Suina	ANCESTRAL SPECIES	3	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.b.a.b ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Pig	MODERN SPECIES	6	ORC2 (ENSSSCG00000016098) #8	NIF3L1 (ENSSSCG00000039654) #9	PPIL3 (ENSSSCG00000016096) #10	CLK1 (ENSSSCG00000016095) #11	BZW1 (ENSSSCG00000016094) #13	ENSSSCG00000016093 #14	ENSSSCG00000040051 #15	AOX1 (ENSSSCG00000029606) #16	SGO2 (ENSSSCG00000016092)	ENSSSCG00000016091 #17	SPATS2L (ENSSSCG00000016090) #18	MAIP1 (ENSSSCG00000036676) #19	TYW5 (ENSSSCG00000016087) #20	C2orf69 (ENSSSCG00000016086) #21	ENSSSCG00000016085	SATB2 (ENSSSCG00000021657) #22	ENSSSCG00000041534	PLCL1 (ENSSSCG00000016083) #23	ENSSSCG00000061867	BOLL (ENSSSCG00000016082) #24	MARS2 (ENSSSCG00000034494)	RFTN2 (ENSSSCG00000037483) #25	MOBKL3 (ENSSSCG00000016079) #26	HSPE1 (ENSSSCG00000016078) ##28	HSPD1 (ENSSSCG00000016077) ##29	COQ10B (ENSSSCG00000016076) #30	ENSSSCG00000063544 #31	ENSSSCG00000016075 #31	ENSSSCG00000051570	ANKRD44 (ENSSSCG00000016074) #33	PGAP1 (ENSSSCG00000016073) #36
Chacoan peccary	MODERN SPECIES	91	ORC2 (ENSCWAG00000010595) #8	NIF3L1 (ENSCWAG00000010511) #9	PPIL3 (ENSCWAG00000010443) #10	CLK1 (ENSCWAG00000010341) #11	BZW1 (ENSCWAG00000009955) #13	ENSCWAG00000009721 #14	ENSCWAG00000009483 #15	AOX1 (ENSCWAG00000009210) #16	SGO2 (ENSCWAG00000009111)	KCTD18 (ENSCWAG00000009030) #17	SPATS2L (ENSCWAG00000008608) #18	MAIP1 (ENSCWAG00000008554) #19	TYW5 (ENSCWAG00000008494) #20	C2orf69 (ENSCWAG00000008457) #21	FTCDNL1 (ENSCWAG00000008365)	SATB2 (ENSCWAG00000008150) #22	PLCL1 (ENSCWAG00000007994) #23	ENSCWAG00000007948 #24
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.i.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00390000012561.b.i.a #13	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.i.b #13	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.i.b #13	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.i.b #13	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000154631.c.b	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.i.b #13	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000154631.c.b	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Beluga whale	MODERN SPECIES	84	ENSDLEG00000017782	FAM126B (ENSDLEG00000017730)	ORC2 (ENSDLEG00000017685) #8	NIF3L1 (ENSDLEG00000017669) #9	PPIL3 (ENSDLEG00000017637) #10	CLK1 (ENSDLEG00000017601) #11	ENSDLEG00000017537 #13	AOX1 (ENSDLEG00000017388) #16	SGO2 (ENSDLEG00000017351)	KCTD18 (ENSDLEG00000017330) #17	SPATS2L (ENSDLEG00000017277) #18	MAIP1 (ENSDLEG00000017256) #19	TYW5 (ENSDLEG00000017244) #20	CUNH2orf69 (ENSDLEG00000017234) #21	ENSDLEG00000017202	SATB2 (ENSDLEG00000017180) #22	ENSDLEG00000017147	PLCL1 (ENSDLEG00000017124) #23	ENSDLEG00000017113	ENSDLEG00000017109	BOLL (ENSDLEG00000017047) #24	MARS2 (ENSDLEG00000017031)	RFTN2 (ENSDLEG00000017004) #25	HSPE1 (ENSDLEG00000016991) #26	ENSDLEG00000016973 ##28	HSPD1 (ENSDLEG00000016961) ##29	COQ10B (ENSDLEG00000016950) #30	SF3B1 (ENSDLEG00000016863) #31	ANKRD44 (ENSDLEG00000016735) #33	PGAP1 (ENSDLEG00000016703) #36	GTF3C3 (ENSDLEG00000016677) #37
Narwhal	MODERN SPECIES	302	ENSMMNG00015008710	ORC2 (ENSMMNG00015008727) #8	NIF3L1 (ENSMMNG00015008742) #9	PPIL3 (ENSMMNG00015008752) #10	CLK1 (ENSMMNG00015008783) #11	ENSMMNG00015008840 #13	AOX1 (ENSMMNG00015008883) #16	ENSMMNG00015008917	ENSMMNG00015008923	KCTD18 (ENSMMNG00015008930) #17	SPATS2L (ENSMMNG00015008966) #18	MAIP1 (ENSMMNG00015009034) #19	TYW5 (ENSMMNG00015009041) #20	C2orf69 (ENSMMNG00015009051) #21	FTCDNL1 (ENSMMNG00015009064)	SATB2 (ENSMMNG00015009088) #22	ENSMMNG00015009121	PLCL1 (ENSMMNG00015009132) #23	ENSMMNG00015009146	MARS2 (ENSMMNG00015009149)	RFTN2 (ENSMMNG00015009156) #25	ENSMMNG00015005118	MOB4 (ENSMMNG00015005131) #26	ENSMMNG00015005152 ##28	ENSMMNG00015005160 ##29	COQ10B (ENSMMNG00015005170) #30	SF3B1 (ENSMMNG00015005194) #31	ANKRD44 (ENSMMNG00015005236) #33	PGAP1 (ENSMMNG00015005302) #36	C2orf66 (ENSMMNG00015005331)	GTF3C3 (ENSMMNG00015005350) #37
Vaquita	MODERN SPECIES	18	ENSPSNG00000017913	ENSPSNG00000017952	ORC2 (ENSPSNG00000017971) #8	NIF3L1 (ENSPSNG00000018036) #9	PPIL3 (ENSPSNG00000018105) #10	CLK1 (ENSPSNG00000018159) #11	ENSPSNG00000018409 #13	AOX1 (ENSPSNG00000018708) #16	SGO2 (ENSPSNG00000018985)	KCTD18 (ENSPSNG00000019019) #17	SPATS2L (ENSPSNG00000019081) #18	MAIP1 (ENSPSNG00000019254) #19	TYW5 (ENSPSNG00000019307) #20	C2orf69 (ENSPSNG00000019348) #21	ENSPSNG00000019397	SATB2 (ENSPSNG00000019498) #22	ENSPSNG00000019635	PLCL1 (ENSPSNG00000019688) #23	ENSPSNG00000019773	BOLL (ENSPSNG00000019819) #24	MARS2 (ENSPSNG00000020001)	RFTN2 (ENSPSNG00000020023) #25	MOB4 (ENSPSNG00000020101) #26	HSPD1 (ENSPSNG00000020243) ##29	ENSPSNG00000020315 ##28	COQ10B (ENSPSNG00000020376) #30	SF3B1 (ENSPSNG00000020453) #31	ANKRD44 (ENSPSNG00000020570) #33	PGAP1 (ENSPSNG00000020691) #36	C2orf66 (ENSPSNG00000020837)	GTF3C3 (ENSPSNG00000002123) #37
Dolphin	MODERN SPECIES	16																SATB2 (ENSTTRG00000001254) #22
Sperm whale	MODERN SPECIES	11	ENSPCTG00005001851	FAM126B (ENSPCTG00005001830)	ORC2 (ENSPCTG00005001802) #8	NIF3L1 (ENSPCTG00005001774) #9	PPIL3 (ENSPCTG00005001749) #10	CLK1 (ENSPCTG00005001575) #11	BZW1 (ENSPCTG00005001498) #13	AOX1 (ENSPCTG00005001418) #16	SGO2 (ENSPCTG00005001385)	KCTD18 (ENSPCTG00005001363) #17	SPATS2L (ENSPCTG00005001213) #18	MAIP1 (ENSPCTG00005001167) #19	TYW5 (ENSPCTG00005001148) #20	C2H2orf69 (ENSPCTG00005001135) #21	ENSPCTG00005001114	SATB2 (ENSPCTG00005001020) #22	PLCL1 (ENSPCTG00005000965) #23	BOLL (ENSPCTG00005000834) #24	MARS2 (ENSPCTG00005000802)	RFTN2 (ENSPCTG00005000782) #25	MOB4 (ENSPCTG00005000750) #26	HSPE1 (ENSPCTG00005000700) ##28	HSPD1 (ENSPCTG00005000653) ##29	COQ10B (ENSPCTG00005000606) #30	SF3B1 (ENSPCTG00005000567) #31	ANKRD44 (ENSPCTG00005000458) #33	PGAP1 (ENSPCTG00005000363) #36	C2orf66 (ENSPCTG00005000282)	GTF3C3 (ENSPCTG00005000262) #37	ENSPCTG00005000238	ENSPCTG00005000224
Blue whale	MODERN SPECIES	18	ORC2 (ENSBMSG00010003997) #8	NIF3L1 (ENSBMSG00010003954) #9	PPIL3 (ENSBMSG00010003923) #10	CLK1 (ENSBMSG00010003860) #11	ENSBMSG00010003785 #13	ENSBMSG00010003674 #14	AOX1 (ENSBMSG00010003482) #16	ENSBMSG00010003395	ENSBMSG00010003382	KCTD18 (ENSBMSG00010003365) #17	SPATS2L (ENSBMSG00010003251) #18	MAIP1 (ENSBMSG00010003193) #19	TYW5 (ENSBMSG00010003179) #20	C2orf69 (ENSBMSG00010003167) #21	FTCDNL1 (ENSBMSG00010003148)	SATB2 (ENSBMSG00010003076) #22	PLCL1 (ENSBMSG00010002964) #23	BOLL (ENSBMSG00010002886) #24	MARS2 (ENSBMSG00010002857)	RFTN2 (ENSBMSG00010002848) #25	MOB4 (ENSBMSG00010002811) #26	ENSBMSG00010002778 ##28	HSPD1 (ENSBMSG00010002754) ##29	COQ10B (ENSBMSG00010002718) #30	SF3B1 (ENSBMSG00010002624) #31	ENSBMSG00010002564	ANKRD44 (ENSBMSG00010002506) #33	PGAP1 (ENSBMSG00010002370) #36	C2orf66 (ENSBMSG00010002279)	GTF3C3 (ENSBMSG00010002241) #37	CCDC150 (ENSBMSG00010002134)
Pecora	ANCESTRAL SPECIES	16	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Bos	ANCESTRAL SPECIES	6	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.g #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.g #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Wild yak	MODERN SPECIES	690								AOX1 (ENSBMUG00000000894) #16	SGO2 (ENSBMUG00000000973)	KCTD18 (ENSBMUG00000001001) #17	SPATS2L (ENSBMUG00000001103) #18	MAIP1 (ENSBMUG00000001172) #19	TYW5 (ENSBMUG00000001180) #20	C2orf69 (ENSBMUG00000001195) #21	FTCDNL1 (ENSBMUG00000001215)	SATB2 (ENSBMUG00000001288) #22	PLCL1 (ENSBMUG00000001392) #23
Domestic yak	MODERN SPECIES	11	NIF3L1 (ENSBGRG00000022968) #9	ENSBGRG00000023065	CLK1 (ENSBGRG00000023102) #11	BZW1 (ENSBGRG00000023222) #13	ENSBGRG00000023761 #14	ENSBGRG00000026310 #15	ENSBGRG00000026671	AOX1 (ENSBGRG00000026674) #16	SGO2 (ENSBGRG00000026677)	KCTD18 (ENSBGRG00000026680) #17	SPATS2L (ENSBGRG00000026684) #18	MAIP1 (ENSBGRG00000026693) #19	TYW5 (ENSBGRG00000026697) #20	C2orf69 (ENSBGRG00000026703) #21	FTCDNL1 (ENSBGRG00000026708)	SATB2 (ENSBGRG00000026716) #22	ENSBGRG00000000192	PLCL1 (ENSBGRG00000000210) #23	BOLL (ENSBGRG00000000262) #24	MARS2 (ENSBGRG00000000375)	RFTN2 (ENSBGRG00000000406) #25	ENSBGRG00000000487 #26	HSPE1 (ENSBGRG00000000521) ##28	HSPD1 (ENSBGRG00000000539) ##29	COQ10B (ENSBGRG00000000566) #30	SF3B1 (ENSBGRG00000000604) #31	ANKRD44 (ENSBGRG00000000733) #33	PGAP1 (ENSBGRG00000000882) #36	C2orf66 (ENSBGRG00000001016)	GTF3C3 (ENSBGRG00000001029) #37	ENSBGRG00000001058
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.g #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b.a ##29	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00940000162534.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Cow	MODERN SPECIES	11	PPIL3 (ENSBTAG00000005416)	CLK1 (ENSBTAG00000005408) #11	BZW1 (ENSBTAG00000006049) #13	AOX2 (ENSBTAG00000026812) #14	AOX4 (ENSBTAG00000038878) #15	ENSBTAG00000047849	AOX1 (ENSBTAG00000009725) #16	SGO2 (ENSBTAG00000031579)	KCTD18 (ENSBTAG00000002272) #17	SPATS2L (ENSBTAG00000016092) #18	ENSBTAG00000024003	MAIP1 (ENSBTAG00000019231) #19	TYW5 (ENSBTAG00000019232) #20	C2H2orf69 (ENSBTAG00000009952) #21	ENSBTAG00000031595	SATB2 (ENSBTAG00000016334) #22	PLCL1 (ENSBTAG00000007635) #23	BOLL (ENSBTAG00000031614) #24	MARS2 (ENSBTAG00000002056)	RFTN2 (ENSBTAG00000007652) #25	MOB4 (ENSBTAG00000019116) #26	HSPE1 (ENSBTAG00000012589) ##28	HSPD1 (ENSBTAG00000012586) ##29	COQ10B (ENSBTAG00000004659) #30	SF3B1 (ENSBTAG00000008915) #31	ENSBTAG00000012171	ANKRD44 (ENSBTAG00000031696) #33	PGAP1 (ENSBTAG00000020416) #36	GTF3C3 (ENSBTAG00000007779) #37	CCDC150 (ENSBTAG00000017695)	HECW2 (ENSBTAG00000020696)
Hybrid Bos Indicus	MODERN SPECIES	11	NIF3L1 (ENSBIXG00005031554) #9	PPIL3 (ENSBIXG00005031553) #10	CLK1 (ENSBIXG00005031552) #11	BZW1 (ENSBIXG00005031551) #13	ENSBIXG00005031550 #14	ENSBIXG00005030534 #15	AOX1 (ENSBIXG00005008599) #16	SGO2 (ENSBIXG00005008643)	KCTD18 (ENSBIXG00005005902) #17	ENSBIXG00005008660	SPATS2L (ENSBIXG00005008726) #18	MAIP1 (ENSBIXG00005008787) #19	TYW5 (ENSBIXG00005008805) #20	C2orf69 (ENSBIXG00005008818) #21	FTCDNL1 (ENSBIXG00005008837)	SATB2 (ENSBIXG00005008954) #22	PLCL1 (ENSBIXG00005009092) #23	ENSBIXG00005009140	BOLL (ENSBIXG00005009209) #24	MARS2 (ENSBIXG00005009234)	RFTN2 (ENSBIXG00005009241) #25	MOB4 (ENSBIXG00005009278) #26	ENSBIXG00005009301 ##28	ENSBIXG00005009345 ##29	COQ10B (ENSBIXG00005009394) #30	SF3B1 (ENSBIXG00005000503) #31	ENSBIXG00005009496	ANKRD44 (ENSBIXG00005009540) #33	PGAP1 (ENSBIXG00005009684) #36	C2orf66 (ENSBIXG00005009722)	GTF3C3 (ENSBIXG00005005945) #37
American bison	MODERN SPECIES	3330	CLK1 (ENSBBBG00000002583) #11	BZW1 (ENSBBBG00000013019) #13	ENSBBBG00000013042 #14	ENSBBBG00000013095 #15	ENSBBBG00000002631	AOX1 (ENSBBBG00000013130) #16	ENSBBBG00000013142	ENSBBBG00000013146	KCTD18 (ENSBBBG00000013155) #17	ENSBBBG00000013159	SPATS2L (ENSBBBG00000013236) #18	MAIP1 (ENSBBBG00000001643) #19	TYW5 (ENSBBBG00000013257) #20	C2orf69 (ENSBBBG00000002681) #21	FTCDNL1 (ENSBBBG00000008285)	SATB2 (ENSBBBG00000013343) #22	PLCL1 (ENSBBBG00000002738) #23	BOLL (ENSBBBG00000013412) #24	MARS2 (ENSBBBG00000013415)	RFTN2 (ENSBBBG00000002765) #25	MOB4 (ENSBBBG00000013501) #26	ENSBBBG00000013516 ##28	HSPD1 (ENSBBBG00000013534) ##29	ENSBBBG00000007252 #30	ENSBBBG00000013596 #31	ENSBBBG00000013601	ANKRD44 (ENSBBBG00000013667) #33	PGAP1 (ENSBBBG00000013723) #36	C2orf66 (ENSBBBG00000013730)	GTF3C3 (ENSBBBG00000002934) #37	ENSBBBG00000013757
Caprinae	ANCESTRAL SPECIES	5	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.h #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b.e #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.s #30	ENSGT00940000155367.t #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Rambouillet Sheep	MODERN SPECIES	11	NIF3L1 (ENSOARG00020016593) #9	PPIL3 (ENSOARG00020016501) #10	CLK1 (ENSOARG00020016395) #11	BZW1 (ENSOARG00020015764) #13	ENSOARG00020015365 #14	ENSOARG00020015282	ENSOARG00020015070 #15	AOX1 (ENSOARG00020014833) #16	ENSOARG00020014683 #17	ENSOARG00020014668	SPATS2L (ENSOARG00020014270) #18	MAIP1 (ENSOARG00020014186) #19	TYW5 (ENSOARG00020014145) #20	C2orf69 (ENSOARG00020014115) #21	FTCDNL1 (ENSOARG00020013918)	SATB2 (ENSOARG00020013534) #22	ENSOARG00020013422	ENSOARG00020013393	ENSOARG00020013380	ENSOARG00020013353	ENSOARG00020013326	ENSOARG00020013287	BOLL (ENSOARG00020012643) #24	MARS2 (ENSOARG00020012596)	RFTN2 (ENSOARG00020012524) #25	ENSOARG00020012334 #26	HSP10 (ENSOARG00020012227) ##28	ENSOARG00020012172 ##29	COQ10B (ENSOARG00020011999) #30	SF3B1 (ENSOARG00020011806) #31	ANKRD44 (ENSOARG00020010197) #33
Goat	MODERN SPECIES	11	NIF3L1 (ENSCHIG00000009478) #9	PPIL3 (ENSCHIG00000019642) #10	CLK1 (ENSCHIG00000018314) #11	BZW1 (ENSCHIG00000019964) #13	ENSCHIG00000020570 #14	ENSCHIG00000013677 #15	ENSCHIG00000019390	AOX1 (ENSCHIG00000013439) #16	SGO2 (ENSCHIG00000013638)	KCTD18 (ENSCHIG00000022753) #17	SPATS2L (ENSCHIG00000026377) #18	MAIP1 (ENSCHIG00000007507) #19	ENSCHIG00000017324 #20	ENSCHIG00000011016 #21	FTCDNL1 (ENSCHIG00000022126)	SATB2 (ENSCHIG00000022376) #22	PLCL1 (ENSCHIG00000013331) #23	ENSCHIG00000011685	ENSCHIG00000021317	BOLL (ENSCHIG00000024995) #24	MARS2 (ENSCHIG00000016548)	RFTN2 (ENSCHIG00000012903) #25	ENSCHIG00000026973 #26	HSPE1 (ENSCHIG00000009467) ##28	HSPD1 (ENSCHIG00000004382) ##29	ENSCHIG00000020913 #30	SF3B1 (ENSCHIG00000015226) #31	ANKRD44 (ENSCHIG00000017665) #33	ENSCHIG00000012550	PGAP1 (ENSCHIG00000018177) #36	GTF3C3 (ENSCHIG00000016485) #37
Siberian musk deer	MODERN SPECIES	351	PPIL3 (ENSMMSG00000024329) #10	CLK1 (ENSMMSG00000024326) #11	ENSMMSG00000024321 #13	ENSMMSG00000024314 #14	ENSMMSG00000013161 #15	ENSMMSG00000012463	AOX1 (ENSMMSG00000012371) #16	SGO2 (ENSMMSG00000012334)	KCTD18 (ENSMMSG00000012309) #17	SPATS2L (ENSMMSG00000011944) #18	MAIP1 (ENSMMSG00000011886) #19	TYW5 (ENSMMSG00000011859) #20	C2orf69 (ENSMMSG00000011836) #21	ENSMMSG00000011819	ENSMMSG00000011780	SATB2 (ENSMMSG00000011682) #22
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000004999	BZW1 (ENSCHYG00000009251) #13	ENSCHYG00000009654 #14	ENSCHYG00000009851 #15	ENSCHYG00000010410	ENSCHYG00000010452	AOX1 (ENSCHYG00000010517) #16	SGO2 (ENSCHYG00000011236)	KCTD18 (ENSCHYG00000011325) #17	SPATS2L (ENSCHYG00000011390) #18	ENSCHYG00000011736	MAIP1 (ENSCHYG00000011759) #19	TYW5 (ENSCHYG00000011850) #20	C2orf69 (ENSCHYG00000011903) #21	ENSCHYG00000011965	SATB2 (ENSCHYG00000012100) #22	ENSCHYG00000012371	PLCL1 (ENSCHYG00000012427) #23	BOLL (ENSCHYG00000012765) #24	MARS2 (ENSCHYG00000013177)	RFTN2 (ENSCHYG00000013201) #25	MOB4 (ENSCHYG00000013303) #26	ENSCHYG00000013442 ##28	ENSCHYG00000013593 ##29	ENSCHYG00000013673 #30	SF3B1 (ENSCHYG00000013853) #31	ANKRD44 (ENSCHYG00000014222) #33	PGAP1 (ENSCHYG00000015550) #36	C2orf66 (ENSCHYG00000015983)	GTF3C3 (ENSCHYG00000016098) #37	CCDC150 (ENSCHYG00000016506)
Camelidae	ANCESTRAL SPECIES	58	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000006350.m.a.c.b.a.b ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Arabian camel	MODERN SPECIES	31	PPIL3 (ENSCDRG00005007234) #10	CLK1 (ENSCDRG00005007272) #11	BZW1 (ENSCDRG00005008038) #13	ENSCDRG00005008482 #14	ENSCDRG00005008740 #15	AOX1 (ENSCDRG00005009121) #16	ENSCDRG00005009409	ENSCDRG00005009460	KCTD18 (ENSCDRG00005009496) #17	SPATS2L (ENSCDRG00005009592) #18	ENSCDRG00005010296	MAIP1 (ENSCDRG00005010319) #19	TYW5 (ENSCDRG00005010376) #20	C2orf69 (ENSCDRG00005010427) #21	FTCDNL1 (ENSCDRG00005010462)	SATB2 (ENSCDRG00005010563) #22	PLCL1 (ENSCDRG00005010932) #23	BOLL (ENSCDRG00005011111) #24	MARS2 (ENSCDRG00005011548)	RFTN2 (ENSCDRG00005011566) #25	MOB4 (ENSCDRG00005011619) #26	HSPE1 (ENSCDRG00005011802) ##28	HSPD1 (ENSCDRG00005011897) ##29	COQ10B (ENSCDRG00005012028) #30	ENSCDRG00005012185	SF3B1 (ENSCDRG00005012215) #31	ANKRD44 (ENSCDRG00005012443) #33	PGAP1 (ENSCDRG00005012687) #36	C2orf66 (ENSCDRG00005012843)	GTF3C3 (ENSCDRG00005012878) #37	CCDC150 (ENSCDRG00005012991)
Alpaca	MODERN SPECIES	63													MAIP1 (ENSVPAG00000007005) #19	TYW5 (ENSVPAG00000007004) #20	C2orf69 (ENSVPAG00000007002) #21	SATB2 (ENSVPAG00000007001) #22
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Caniformia	ANCESTRAL SPECIES	14	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.b ##28	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.f #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393.p #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.f #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00940000154276.kb.a.b	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393.p #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37
American black bear	MODERN SPECIES	846															ENSUAMG00000028250	SATB2 (ENSUAMG00000028249) #22
Polar bear	MODERN SPECIES	142	ORC2 (ENSUMAG00000021479) #8	PPIL3 (ENSUMAG00000021460) #10	NIF3L1 (ENSUMAG00000021455) #9	CLK1 (ENSUMAG00000021445) #11	BZW1 (ENSUMAG00000021441) #13	ENSUMAG00000021399 #14	ENSUMAG00000021134 #15	AOX1 (ENSUMAG00000021073) #16	SGO2 (ENSUMAG00000021068)	KCTD18 (ENSUMAG00000021066) #17	SPATS2L (ENSUMAG00000021060) #18	MAIP1 (ENSUMAG00000021043) #19	TYW5 (ENSUMAG00000021039) #20	C2orf69 (ENSUMAG00000021037) #21	FTCDNL1 (ENSUMAG00000021033)	SATB2 (ENSUMAG00000021003) #22	PLCL1 (ENSUMAG00000020984) #23	ENSUMAG00000020978	ENSUMAG00000020976	BOLL (ENSUMAG00000020969) #24	MARS2 (ENSUMAG00000020961)	RFTN2 (ENSUMAG00000020958) #25	MOB4 (ENSUMAG00000020955) #26	HSPE1 (ENSUMAG00000020954) ##28	HSPD1 (ENSUMAG00000020952) ##29	COQ10B (ENSUMAG00000020949) #30	SF3B1 (ENSUMAG00000020945) #31	ANKRD44 (ENSUMAG00000020937) #33	PGAP1 (ENSUMAG00000020815) #36	GTF3C3 (ENSUMAG00000020787) #37	CCDC150 (ENSUMAG00000020726)
Giant Panda	MODERN SPECIES	11	ORC2 (ENSAMEG00000005940) #8	NIF3L1 (ENSAMEG00000005921) #9	PPIL3 (ENSAMEG00000005917) #10	CLK1 (ENSAMEG00000005887) #11	BZW1 (ENSAMEG00000005859) #13	AOX2 (ENSAMEG00000005633) #14	AOX4 (ENSAMEG00000005561) #15	AOX1 (ENSAMEG00000005445) #16	SGO2 (ENSAMEG00000005435)	KCTD18 (ENSAMEG00000005423) #17	SPATS2L (ENSAMEG00000005405) #18	MAIP1 (ENSAMEG00000005390) #19	TYW5 (ENSAMEG00000005386) #20	C2orf69 (ENSAMEG00000005381) #21	ENSAMEG00000023460	SATB2 (ENSAMEG00000005350) #22	ENSAMEG00000019732	PLCL1 (ENSAMEG00000013707) #23	BOLL (ENSAMEG00000013712) #24	MARS2 (ENSAMEG00000019748)	RFTN2 (ENSAMEG00000013737) #25	MOB4 (ENSAMEG00000013751) #26	ENSAMEG00000013769 #28	HSPD1 (ENSAMEG00000013770) ##29	COQ10B (ENSAMEG00000013802) #30	SF3B1 (ENSAMEG00000013809) #31	ANKRD44 (ENSAMEG00000013836) #33	PGAP1 (ENSAMEG00000013887) #36	C2orf66 (ENSAMEG00000013924)	GTF3C3 (ENSAMEG00000013925) #37	CCDC150 (ENSAMEG00000013946)
Mustelinae	ANCESTRAL SPECIES	44	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000163579	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.b.a.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
American mink	MODERN SPECIES	40	NIF3L (ENSNVIG00000008895) #9	ENSNVIG00000008933	ENSNVIG00000008938 #11	ENSNVIG00000008952 #11	BZW1 (ENSNVIG00000008992) #13	ENSNVIG00000009087 #14	ENSNVIG00000009216 #15	AOX1 (ENSNVIG00000009846) #16	SGO2 (ENSNVIG00000009949)	KCTD18 (ENSNVIG00000009981) #17	SPATS2L (ENSNVIG00000010010) #18	MAIP1 (ENSNVIG00000010220) #19	TYW5 (ENSNVIG00000010238) #20	C2orf69 (ENSNVIG00000010249) #21	ENSNVIG00000010260	SATB2 (ENSNVIG00000010289) #22	PLCL1 (ENSNVIG00000010416) #23	ENSNVIG00000010433	BOLL (ENSNVIG00000010444) #24	MARS2 (ENSNVIG00000010510)	RFTN2 (ENSNVIG00000010521) #25	PHOCN (ENSNVIG00000010530) #26	ENSNVIG00000010568 ##28	ENSNVIG00000010575 ##29	COQ10B (ENSNVIG00000010606) #30	SF3B1 (ENSNVIG00000010631) #31	ANKRD44 (ENSNVIG00000010686) #33	PGAP1 (ENSNVIG00000010723) #36	C2orf66 (ENSNVIG00000010821)	GTF3C3 (ENSNVIG00000010824) #37	CCDC150 (ENSNVIG00000010849)
Ferret	MODERN SPECIES	333									SGO2 (ENSMPUG00000008053)	KCTD18 (ENSMPUG00000008044) #17	SPATS2L (ENSMPUG00000008030) #18	MAIP1 (ENSMPUG00000008001) #19	TYW5 (ENSMPUG00000007993) #20	C2orf69 (ENSMPUG00000007987) #21	ENSMPUG00000007983	SATB2 (ENSMPUG00000007972) #22	PLCL1 (ENSMPUG00000007965) #23	BOLL (ENSMPUG00000007922) #24	MARS2 (ENSMPUG00000019823)	ENSMPUG00000019822	RFTN2 (ENSMPUG00000007918) #25	MOB4 (ENSMPUG00000007910) #26	ENSMPUG00000007818 ##29	COQ10B (ENSMPUG00000007810) #30	SF3B1 (ENSMPUG00000007799) #31	ANKRD44 (ENSMPUG00000007785) #33	PGAP1 (ENSMPUG00000007770) #36	GTF3C3 (ENSMPUG00000007764) #37	CCDC150 (ENSMPUG00000007750)	HECW2 (ENSMPUG00000007553)	STK17B (ENSMPUG00000007548)
Canidae	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01070000254992	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.b ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b.c #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000182922.a.a.a.b.a.a.b	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT01070000254992	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.b ##28	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Dingo	MODERN SPECIES	398	HYCC2 (ENSCAFG00020003567)	ORC2 (ENSCAFG00020003630) #8	NIF3L1 (ENSCAFG00020004364) #9	PPIL3 (ENSCAFG00020004369) #10	CLK1 (ENSCAFG00020004400) #11	ENSCAFG00020004433 #13	ENSCAFG00020004462 #14	ENSCAFG00020004494 #15	ENSCAFG00020004535	SGO2 (ENSCAFG00020004540)	KCTD18 (ENSCAFG00020004542) #17	SPATS2L (ENSCAFG00020004547) #18	MAIP1 (ENSCAFG00020004558) #19	ENSCAFG00020004570 #20	C2orf69 (ENSCAFG00020004572) #21	SATB2 (ENSCAFG00020004584) #22	PLCL1 (ENSCAFG00020004643) #23	ENSCAFG00020004654	BOLL (ENSCAFG00020004659) #24	MARS2 (ENSCAFG00020004676)	RFTN2 (ENSCAFG00020004690) #25	MOB4 (ENSCAFG00020004694) #26	ENSCAFG00020004700 ##28	HSPD1 (ENSCAFG00020004710) ##29	ENSCAFG00020004741	COQ10B (ENSCAFG00020004745) #30	SF3B1 (ENSCAFG00020004750) #31	ANKRD44 (ENSCAFG00020004766) #33	PGAP1 (ENSCAFG00020004924) #36	GTF3C3 (ENSCAFG00020004945) #37	CCDC150 (ENSCAFG00020004958)
Dog	MODERN SPECIES	30	ORC2 (ENSCAFG00845029735) #8	NIF3L1 (ENSCAFG00845029603) #9	PPIL3 (ENSCAFG00845029569) #10	CLK1 (ENSCAFG00845029455) #11	ENSCAFG00845029244 #13	AOX2 (ENSCAFG00845029172) #14	AOX4 (ENSCAFG00845028797) #15	RPL21 (ENSCAFG00845028706)	SGO2 (ENSCAFG00845028523)	KCTD18 (ENSCAFG00845028480) #17	ENSCAFG00845028453	SPATS2L (ENSCAFG00845028292) #18	MAIP1 (ENSCAFG00845028191) #19	TYW5 (ENSCAFG00845028098) #20	C2orf69 (ENSCAFG00845028048) #21	SATB2 (ENSCAFG00845027789) #22	PLCL1 (ENSCAFG00845027611) #23	BOLL (ENSCAFG00845027465) #24	MARS2 (ENSCAFG00845027432)	RFTN2 (ENSCAFG00845027373) #25	ENSCAFG00845027301	HSPE1 (ENSCAFG00845027216) #26	HSPD1 (ENSCAFG00845027075) ##29	SF3B1 (ENSCAFG00845026632) #31	COQ10B (ENSCAFG00845026337) #30	ENSCAFG00845026214	ANKRD44 (ENSCAFG00845025354) #33	PGAP1 (ENSCAFG00845024751) #36	C2orf66 (ENSCAFG00845024629)	GTF3C3 (ENSCAFG00845024524) #37	CCDC150 (ENSCAFG00845023218)
Red fox	MODERN SPECIES	41	ORC2 (ENSVVUG00000018996) #8	NIF3L1 (ENSVVUG00000019010) #9	PPIL3 (ENSVVUG00000019021) #10	CLK1 (ENSVVUG00000019051) #11	ENSVVUG00000019055	BZW1 (ENSVVUG00000019058) #13	ENSVVUG00000019458 #14	ENSVVUG00000025395 #15	SGO2 (ENSVVUG00000025845)	KCTD18 (ENSVVUG00000025846) #17	ENSVVUG00000025847	SPATS2L (ENSVVUG00000025851) #18	MAIP1 (ENSVVUG00000025867) #19	TYW5 (ENSVVUG00000025871) #20	C2orf69 (ENSVVUG00000025875) #21	SATB2 (ENSVVUG00000025880) #22	ENSVVUG00000025893	PLCL1 (ENSVVUG00000025896) #23	ENSVVUG00000025899	BOLL (ENSVVUG00000025901) #24	MARS2 (ENSVVUG00000025921)	RFTN2 (ENSVVUG00000025925) #25	MOB4 (ENSVVUG00000025930) #26	ENSVVUG00000025937 ##28	HSPD1 (ENSVVUG00000025940) ##29	COQ10B (ENSVVUG00000025944) #30	SF3B1 (ENSVVUG00000025948) #31	ANKRD44 (ENSVVUG00000025957) #33	PGAP1 (ENSVVUG00000025981) #36	GTF3C3 (ENSVVUG00000025988) #37	CCDC150 (ENSVVUG00000025997)
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00940000154107.b	ENSGT00530000064234.k #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.o #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00940000154107.b	ENSGT00530000064234.k #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.o #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000011295.a	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00940000154107.b	ENSGT00530000064234.k #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.o #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
lion	MODERN SPECIES	8	NDUFB3 (ENSPLOG00000015772)	HYCC2 (ENSPLOG00000015803)	ORC2 (ENSPLOG00000015970) #8	NIF3L1 (ENSPLOG00000016032) #9	PPIL3 (ENSPLOG00000016086) #10	CLK1 (ENSPLOG00000016118) #11	BZW1 (ENSPLOG00000016320) #13	ENSPLOG00000016579 #14	SGO2 (ENSPLOG00000016840)	KCTD18 (ENSPLOG00000016872) #17	SPATS2L (ENSPLOG00000016944) #18	MAIP1 (ENSPLOG00000010863) #19	TYW5 (ENSPLOG00000010891) #20	C2orf69 (ENSPLOG00000010947) #21	FTCDNL1 (ENSPLOG00000010989)	SATB2 (ENSPLOG00000011078) #22	PLCL1 (ENSPLOG00000011340) #23	ENSPLOG00000011407	BOLL (ENSPLOG00000011460) #24	MARS2 (ENSPLOG00000011689)	RFTN2 (ENSPLOG00000011715) #25	MOB4 (ENSPLOG00000011894) #26	ENSPLOG00000012097 ##28	HSPD1 (ENSPLOG00000012200) ##29	ENSPLOG00000012317 #30	ENSPLOG00000012415	SF3B1 (ENSPLOG00000012481) #31	ANKRD44 (ENSPLOG00000012744) #33	PGAP1 (ENSPLOG00000012908) #36	GTF3C3 (ENSPLOG00000013217) #37	CCDC150 (ENSPLOG00000013330)
leopard	MODERN SPECIES	115	HYCC2 (ENSPPRG00000010091)	ORC2 (ENSPPRG00000010416) #8	NIF3L1 (ENSPPRG00000011329) #9	PPIL3 (ENSPPRG00000011604) #10	CLK1 (ENSPPRG00000018038) #11	BZW1 (ENSPPRG00000021144) #13	ENSPPRG00000001179 #14	ENSPPRG00000002911 #15	SGO2 (ENSPPRG00000003606)	KCTD18 (ENSPPRG00000003708) #17	SPATS2L (ENSPPRG00000005755) #18	MAIP1 (ENSPPRG00000005920) #19	TYW5 (ENSPPRG00000005974) #20	C2orf69 (ENSPPRG00000006014) #21	FTCDNL1 (ENSPPRG00000006344)	SATB2 (ENSPPRG00000006763) #22	ENSPPRG00000006827	ENSPPRG00000018398	PLCL1 (ENSPPRG00000006990) #23	BOLL (ENSPPRG00000007352) #24	MARS2 (ENSPPRG00000018464)	RFTN2 (ENSPPRG00000007473) #25	ENSPPRG00000007733 ##28	MOB4 (ENSPPRG00000008095) #26	ENSPPRG00000008279 ##29	ENSPPRG00000018513	ENSPPRG00000008688 #30	SF3B1 (ENSPPRG00000009090) #31	ANKRD44 (ENSPPRG00000009896) #33	PGAP1 (ENSPPRG00000010301) #36	C2orf66 (ENSPPRG00000010325)
Tiger	MODERN SPECIES	481										ENSPTIG00000017025 #17	SPATS2L (ENSPTIG00000009880) #18	MAIP1 (ENSPTIG00000007574) #19	TYW5 (ENSPTIG00000005502) #20	C2orf69 (ENSPTIG00000004162) #21	FTCDNL1 (ENSPTIG00000019386)	SATB2 (ENSPTIG00000015066) #22	PLCL1 (ENSPTIG00000013578) #23	BOLL (ENSPTIG00000011925) #24	RFTN2 (ENSPTIG00000010229) #25	MOB4 (ENSPTIG00000008517) #26	HSPE1 (ENSPTIG00000007777) ##28	HSPD1 (ENSPTIG00000006760) ##29	ENSPTIG00000004508 #30	SF3B1 (ENSPTIG00000021557) #31	ANKRD44 (ENSPTIG00000018232) #33	PGAP1 (ENSPTIG00000013798) #36	C2orf66 (ENSPTIG00000013318)	GTF3C3 (ENSPTIG00000011830) #37	CCDC150 (ENSPTIG00000010300)	ENSPTIG00000007344	HECW2 (ENSPTIG00000004499)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000167666
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.b ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.r #30	ENSGT00390000018393 #31	ENSGT00950000182908.D.f #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466
Megabat	MODERN SPECIES	173																SATB2 (ENSPVAG00000012029) #22
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000015228 #8	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.d ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367.r #30	ENSGT00390000018393 #31	ENSGT00950000182908.D.f #33	ENSGT00390000016484 #36	ENSGT00390000016929 #37	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Greater horseshoe bat	MODERN SPECIES	26	ORC2 (ENSRFEG00010017722) #8	NIF3L1 (ENSRFEG00010017775) #9	PPIL3 (ENSRFEG00010017851) #10	CLK1 (ENSRFEG00010017933) #11	BZW1 (ENSRFEG00010018183) #13	ENSRFEG00010018448 #14	ENSRFEG00010019480 #15	AOX1 (ENSRFEG00010021989) #16	SGO2 (ENSRFEG00010022000)	KCTD18 (ENSRFEG00010022002) #17	SPATS2L (ENSRFEG00010022016) #18	MAIP1 (ENSRFEG00010022032) #19	TYW5 (ENSRFEG00010022036) #20	C2orf69 (ENSRFEG00010022039) #21	FTCDNL1 (ENSRFEG00010022040)	SATB2 (ENSRFEG00010022046) #22	PLCL1 (ENSRFEG00010022056) #23	BOLL (ENSRFEG00010022065) #24	MARS2 (ENSRFEG00010022069)	RFTN2 (ENSRFEG00010022072) #25	ENSRFEG00010022073	MOB4 (ENSRFEG00010022077) #26	ENSRFEG00010022080 ##28	HSPD1 (ENSRFEG00010022083) ##29	ENSRFEG00010022086 #30	SF3B1 (ENSRFEG00010022087) #31	ANKRD44 (ENSRFEG00010022091) #33	PGAP1 (ENSRFEG00010022103) #36	GTF3C3 (ENSRFEG00010022114) #37	CCDC150 (ENSRFEG00010022122)	HECW2 (ENSRFEG00010022130)
Microbat	MODERN SPECIES	940	ORC2 (ENSMLUG00000001662) #8	NIF3L1 (ENSMLUG00000001658) #9	PPIL3 (ENSMLUG00000013189) #10	CLK1 (ENSMLUG00000000344) #11	BZW1 (ENSMLUG00000001653) #13	ENSMLUG00000022412 #14	ENSMLUG00000027760 #15	AOX1 (ENSMLUG00000016684) #16	SGO2 (ENSMLUG00000004245)	KCTD18 (ENSMLUG00000006605) #17	SPATS2L (ENSMLUG00000006594) #18	MAIP1 (ENSMLUG00000015960) #19	TYW5 (ENSMLUG00000015955) #20	C2orf69 (ENSMLUG00000026751) #21	ENSMLUG00000011411	SATB2 (ENSMLUG00000001554) #22	PLCL1 (ENSMLUG00000002677) #23	BOLL (ENSMLUG00000004999) #24	RFTN2 (ENSMLUG00000004991) #25	MOB4 (ENSMLUG00000004971) #26	ENSMLUG00000000883	HSPE1 (ENSMLUG00000000878) ##28	ENSMLUG00000000871 ##29	COQ10B (ENSMLUG00000000865) #30	SF3B1 (ENSMLUG00000000840) #31	ENSMLUG00000005254	ANKRD44 (ENSMLUG00000010842) #33	PGAP1 (ENSMLUG00000010784) #36	GTF3C3 (ENSMLUG00000024692) #37	CCDC150 (ENSMLUG00000001986)	HECW2 (ENSMLUG00000007654)
Equus	ANCESTRAL SPECIES	18	ENSGT00390000003590 #9	ENSGT00940000153189.B #10	ENSGT00940000159722 #11	ENSGT00390000012561.b #13	ENSGT00950000183114.a.b.b.f.a.b #14	ENSGT00950000183114.a.b.b.f.a.a #15	ENSGT00950000183114.a.b.b.f.b.b #16	ENSGT00950000183114.a.b.b.f.b.a #16	ENSGT00940000154107.b	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136	ENSGT00530000063609.a #25	ENSGT01050000244956.b #26	ENSGT00390000006350.m.a.c.a ##28	ENSGT00390000005727.a.b.b ##29	ENSGT00940000155367 #30	ENSGT00390000018393 #31	ENSGT00390000005254.i.a.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #36	ENSGT00390000009468	ENSGT00390000016929 #37	ENSGT00390000005285
Donkey	MODERN SPECIES	24	NIF3L1 (ENSEASG00005001400) #9	CLK1 (ENSEASG00005000996) #11	BZW1 (ENSEASG00005000922) #13	ENSEASG00005021400 #14	ENSEASG00005028089 #15	ENSEASG00005029204 #14	ENSEASG00005024840 #16	ENSEASG00005027058 #16	SGO2 (ENSEASG00005024538)	KCTD18 (ENSEASG00005020042) #17	SPATS2L (ENSEASG00005020050) #18	MAIP1 (ENSEASG00005020067) #19	TYW5 (ENSEASG00005026976) #20	C2orf69 (ENSEASG00005031146) #21	ENSEASG00005020080	ENSEASG00005029514 #22	PLCL1 (ENSEASG00005020113) #23	ENSEASG00005020114	BOLL (ENSEASG00005020122) #24	MARS2 (ENSEASG00005020133)	RFTN2 (ENSEASG00005020136) #25	MOB4 (ENSEASG00005020142) #26	HSPE1 (ENSEASG00005034821) ##28	ENSEASG00005020152 ##29	COQ10B (ENSEASG00005032559) #30	SF3B1 (ENSEASG00005020159) #31	ENSEASG00005020167	ANKRD44 (ENSEASG00005020169) #33	PGAP1 (ENSEASG00005020202) #36	C2orf66 (ENSEASG00005029887)	GTF3C3 (ENSEASG00005020250) #37
Horse	MODERN SPECIES	9	CLK1 (ENSECAG00000015355) #11	BZW1 (ENSECAG00000011768) #13	ENSECAG00000015199 #14	AOX4 (ENSECAG00000024701) #15	ENSECAG00000032497 #15	ENSECAG00000058396	ENSECAG00000007830 #16	ENSECAG00000018147 #16	SGO2 (ENSECAG00000006038)	KCTD18 (ENSECAG00000001039) #17	SPATS2L (ENSECAG00000018564) #18	MAIP1 (ENSECAG00000050073) #19	TYW5 (ENSECAG00000014128) #20	C18H2orf69 (ENSECAG00000014107) #21	ENSECAG00000013663	SATB2 (ENSECAG00000010043) #22	ENSECAG00000058569	BOLL (ENSECAG00000040654) #24	PLCL1 (ENSECAG00000007274) #23	MARS2 (ENSECAG00000004931)	RFTN2 (ENSECAG00000021296) #25	MOB4 (ENSECAG00000015560) #26	ENSECAG00000055696	ENSECAG00000049872 ##28	HSPD1 (ENSECAG00000008968) ##29	COQ10B (ENSECAG00000006436) #30	SF3B1 (ENSECAG00000021657) #31	ENSECAG00000034847	ANKRD44 (ENSECAG00000008835) #33	PGAP1 (ENSECAG00000019980) #36	C2orf66 (ENSECAG00000058124)