Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Glires	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.v	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000012178.g.a.a #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.v ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Marmotini_b	ANCESTRAL SPECIES	91						ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000012178.g.a.a #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.v ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Arctic ground squirrel	MODERN SPECIES	210						ENSUPAG00010015923 #12	AOX1 (ENSUPAG00010015861) #13	SGO2 (ENSUPAG00010015843) #14	KCTD18 (ENSUPAG00010015819) #15	SPATS2L (ENSUPAG00010015777) #16	MAIP1 (ENSUPAG00010015760) #17	TYW5 (ENSUPAG00010015739) #18	C2orf69 (ENSUPAG00010015730) #19	FTCDNL1 (ENSUPAG00010015721) #20	ENSUPAG00010015718 #21	SATB2 (ENSUPAG00010015643) #22	PLCL1 (ENSUPAG00010015612) #23	BOLL (ENSUPAG00010015589) #24	MARS2 (ENSUPAG00010015585) #25	RFTN2 (ENSUPAG00010015580) #26	ENSUPAG00010015569 #27	ENSUPAG00010015563 #28	COQ10B (ENSUPAG00010015540) #29	SF3B1 (ENSUPAG00010015518) #30
Squirrel	MODERN SPECIES	106																SATB2 (ENSSTOG00000024964) #22	PLCL1 (ENSSTOG00000026164) #23	BOLL (ENSSTOG00000003536) #24	MARS2 (ENSSTOG00000015451) #25	RFTN2 (ENSSTOG00000015446) #26	MOB4 (ENSSTOG00000021024)	ENSSTOG00000031333 ##27	ENSSTOG00000028470 ##28	COQ10B (ENSSTOG00000011048) #29	SF3B1 (ENSSTOG00000011034) #30	ANKRD44 (ENSSTOG00000012130)	PGAP1 (ENSSTOG00000010633)	GTF3C3 (ENSSTOG00000011894)	ENSSTOG00000014552	HECW2 (ENSSTOG00000015188)	STK17B (ENSSTOG00000020599)
Alpin marmot	MODERN SPECIES	8	PPIL3 (ENSMMMG00000012069)	CLK1 (ENSMMMG00000012051)	ENSMMMG00000012026	ENSMMMG00000011976 ##12	ENSMMMG00000011959	ENSMMMG00000011912 #12	AOX1 (ENSMMMG00000011886) #13	ENSMMMG00000011877 #14	KCTD18 (ENSMMMG00000011839) #15	SPATS2L (ENSMMMG00000011689) #16	MAIP1 (ENSMMMG00000011679) #17	TYW5 (ENSMMMG00000011668) #18	C2orf69 (ENSMMMG00000011660) #19	FTCDNL1 (ENSMMMG00000011655) #20	ENSMMMG00000011650 #21	SATB2 (ENSMMMG00000011551) #22	ENSMMMG00000011481	PLCL1 (ENSMMMG00000011429) #23	BOLL (ENSMMMG00000011354) #24	MARS2 (ENSMMMG00000011347) #25	RFTN2 (ENSMMMG00000011220) #26	ENSMMMG00000011174	ENSMMMG00000011161 ##27	ENSMMMG00000011138 ##28	ENSMMMG00000011101 #29	SF3B1 (ENSMMMG00000011081) #30	ANKRD44 (ENSMMMG00000010980)	PGAP1 (ENSMMMG00000010912)	GTF3C3 (ENSMMMG00000010874)	ENSMMMG00000010858	ENSMMMG00000010842
Eurasian red squirrel	MODERN SPECIES	12	NIF3L1 (ENSSVLG00005004091)	PPIL3 (ENSSVLG00005004070)	CLK1 (ENSSVLG00005004020)	BZW1 (ENSSVLG00005003945)	ENSSVLG00005003845 ##12	ENSSVLG00005003767 #12	AOX1 (ENSSVLG00005003683) #13	SGO2 (ENSSVLG00005003633) #14	ENSSVLG00005003604 #15	SPATS2L (ENSSVLG00005003512) #16	MAIP1 (ENSSVLG00005003433) #17	TYW5 (ENSSVLG00005003405) #18	C2orf69 (ENSSVLG00005003387) #19	FTCDNL1 (ENSSVLG00005003343) #20	ENSSVLG00005003317	SATB2 (ENSSVLG00005003278) #22	PLCL1 (ENSSVLG00005003227) #23	ENSSVLG00005003207	BOLL (ENSSVLG00005003123) #24	MARS2 (ENSSVLG00005003085) #25	RFTN2 (ENSSVLG00005003057) #26	MOB4 (ENSSVLG00005002989)	HSPE1 (ENSSVLG00005002940) ##27	ENSSVLG00005002895 ##28	ENSSVLG00005002862 #29	SF3B1 (ENSSVLG00005002801) #30	ANKRD44 (ENSSVLG00005002705)	PGAP1 (ENSSVLG00005002564)	C2orf66 (ENSSVLG00005002524)	ENSSVLG00005002519	GTF3C3 (ENSSVLG00005002487)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b.a.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Degu	MODERN SPECIES	66	ENSODEG00000007860	ORC2 (ENSODEG00000008853)	NIF3L1 (ENSODEG00000008894)	PPIL3 (ENSODEG00000007592)	CLK1 (ENSODEG00000009021)	ENSODEG00000019563	ENSODEG00000008411	ENSODEG00000008135 ##12	ENSODEG00000011138 #12	AOX1 (ENSODEG00000012914) #13	ENSODEG00000009211 #15	SPATS2L (ENSODEG00000009851) #16	MAIP1 (ENSODEG00000008914) #17	TYW5 (ENSODEG00000009836) #18	C2orf69 (ENSODEG00000008700) #19	SATB2 (ENSODEG00000008383) #22	PLCL1 (ENSODEG00000008918) #23	BOLL (ENSODEG00000008471) #24	RFTN2 (ENSODEG00000008704) #26	MOB4 (ENSODEG00000009609)	ENSODEG00000019874	ENSODEG00000011397 ##27	ENSODEG00000009026 ##28	COQ10B (ENSODEG00000008396) #29	ENSODEG00000011153 #30	ENSODEG00000019820	ENSODEG00000008898	ENSODEG00000008698	ENSODEG00000009525	PGAP1 (ENSODEG00000009932)	ENSODEG00000009843
Long-tailed chinchilla	MODERN SPECIES	110	HYCC2 (ENSCLAG00000011177)	ORC2 (ENSCLAG00000013209)	NIF3L1 (ENSCLAG00000013524)	PPIL3 (ENSCLAG00000014050)	CLK1 (ENSCLAG00000011455)	BZW1 (ENSCLAG00000012079)	ENSCLAG00000011199 ##12	ENSCLAG00000014402 #12	AOX1 (ENSCLAG00000011481) #13	ENSCLAG00000012456 #14	ENSCLAG00000014377 #15	SPATS2L (ENSCLAG00000013167) #16	MAIP1 (ENSCLAG00000011913) #17	TYW5 (ENSCLAG00000012009) #18	C2orf69 (ENSCLAG00000012813) #19	SATB2 (ENSCLAG00000016994) #22	PLCL1 (ENSCLAG00000016098) #23	BOLL (ENSCLAG00000017375) #24	MARS2 (ENSCLAG00000010386) #25	RFTN2 (ENSCLAG00000009821) #26	MOB4 (ENSCLAG00000010086)	ENSCLAG00000010686 ##27	HSPD1 (ENSCLAG00000011541) ##28	COQ10B (ENSCLAG00000017377) #29	SF3B1 (ENSCLAG00000014767) #30	ANKRD44 (ENSCLAG00000015396)	PGAP1 (ENSCLAG00000011838)	GTF3C3 (ENSCLAG00000009827)	CCDC150 (ENSCLAG00000012365)	HECW2 (ENSCLAG00000011628)	STK17B (ENSCLAG00000012520)
Guinea pig	MODERN SPECIES	104	HYCC2 (ENSCPOG00000010108)	ORC2 (ENSCPOG00000004552)	NIF3L1 (ENSCPOG00000008572)	PPIL3 (ENSCPOG00000008570)	CLK1 (ENSCPOG00000027067)	ENSCPOG00000010449	ENSCPOG00000019962 ##12	ENSCPOG00000033032 #12	Aox1 (ENSCPOG00000025955) #13	ENSCPOG00000002722 #14	ENSCPOG00000012077 #15	SPATS2L (ENSCPOG00000003190) #16	MAIP1 (ENSCPOG00000003800) #17	TYW5 (ENSCPOG00000035856) #18	C2orf69 (ENSCPOG00000009934) #19	SATB2 (ENSCPOG00000015198) #22	PLCL1 (ENSCPOG00000011478) #23	BOLL (ENSCPOG00000000390) #24	MARS2 (ENSCPOG00000025973) #25	RFTN2 (ENSCPOG00000010463) #26	MOB4 (ENSCPOG00000012746)	ENSCPOG00000027474 ##27	HSPD1 (ENSCPOG00000002588) ##28	COQ10B (ENSCPOG00000002673) #29	SF3B1 (ENSCPOG00000009353) #30	ANKRD44 (ENSCPOG00000026494)	PGAP1 (ENSCPOG00000003177)	GTF3C3 (ENSCPOG00000006643)	CCDC150 (ENSCPOG00000031267)	ENSCPOG00000040067	HECW2 (ENSCPOG00000008908)
Naked mole-rat female	MODERN SPECIES	22	PPIL3 (ENSHGLG00000035729)	Clk1 (ENSHGLG00000011322)	BZW1 (ENSHGLG00000011961)	ENSHGLG00000012205 ##12	Aox4 (ENSHGLG00000012471) #12	AOX1 (ENSHGLG00000012876) #13	SGO2 (ENSHGLG00000015359) #14	ENSHGLG00000047532	ENSHGLG00000015370 #15	SPATS2L (ENSHGLG00000015420) #16	ENSHGLG00000017615	MAIP1 (ENSHGLG00000017548) #17	TYW5 (ENSHGLG00000017557) #18	C2orf69 (ENSHGLG00000040936) #19	ENSHGLG00000020697	SATB2 (ENSHGLG00000015892) #22	ENSHGLG00000043283	PLCL1 (ENSHGLG00000015970) #23	BOLL (ENSHGLG00000017562) #24	MARS2 (ENSHGLG00000049320) #25	RFTN2 (ENSHGLG00000017636) #26	MOB4 (ENSHGLG00000050196)	ENSHGLG00000042669 ##27	HSPD1 (ENSHGLG00000007927) ##28	ENSHGLG00000038699 #29	ENSHGLG00000008285 #30	ANKRD44 (ENSHGLG00000008625)	ENSHGLG00000049153	ENSHGLG00000040344	ENSHGLG00000008965	ENSHGLG00000042696
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000024018	Hycc2 (ENSDORG00000029531)	Orc2 (ENSDORG00000007391)	Nif3l1 (ENSDORG00000007390)	Ppil3 (ENSDORG00000007389)	Clk1 (ENSDORG00000007388)	Bzw1 (ENSDORG00000029865)	Aox2 (ENSDORG00000026718) ##12	Aox4 (ENSDORG00000026668) #12	Aox3 (ENSDORG00000025305) #12	Aox1 (ENSDORG00000004358) #13	Kctd18 (ENSDORG00000007817) #15	Spats2l (ENSDORG00000007816) #16	Maip1 (ENSDORG00000012569) #17	Tyw5 (ENSDORG00000012567) #18	Satb2 (ENSDORG00000001292) #22	Plcl1 (ENSDORG00000000485) #23	Boll (ENSDORG00000010791) #24	Mars2 (ENSDORG00000010789) #25	Rftn2 (ENSDORG00000008999) #26	Mob4 (ENSDORG00000023241)	ENSDORG00000011071 ##27	Hspd1 (ENSDORG00000011069) ##28	Coq10b (ENSDORG00000025804) #29	Sf3b1 (ENSDORG00000002399) #30	ENSDORG00000029693	ENSDORG00000024945	Pgap1 (ENSDORG00000000406)	Gtf3c3 (ENSDORG00000000403)	Hecw2 (ENSDORG00000014759)	Stk17b (ENSDORG00000029601)
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000013473	Clk1 (ENSJJAG00000024354)	Bzw1 (ENSJJAG00000022065)	Aox2 (ENSJJAG00000011668) ##12	Aox4 (ENSJJAG00000017799) #12	Aox1 (ENSJJAG00000019598) #13	ENSJJAG00000015058 #14	Kctd18 (ENSJJAG00000016069) #15	Spats2l (ENSJJAG00000019268) #16	ENSJJAG00000010933	ENSJJAG00000012063	Maip1 (ENSJJAG00000023816) #17	Tyw5 (ENSJJAG00000019361) #18	1700066M21Rik (ENSJJAG00000019976) #19	ENSJJAG00000023987	Satb2 (ENSJJAG00000019883) #22	ENSJJAG00000012932	Plcl1 (ENSJJAG00000024297) #23	Boll (ENSJJAG00000015508) #24	Mars2 (ENSJJAG00000023940) #25	Rftn2 (ENSJJAG00000002223) #26	ENSJJAG00000009865	ENSJJAG00000012025 ##27	ENSJJAG00000016713 ##28	Coq10b (ENSJJAG00000020646) #29	Sf3b1 (ENSJJAG00000010903) #30	ENSJJAG00000018305	Ankrd44 (ENSJJAG00000016107)	Pgap1 (ENSJJAG00000009924)	Gtf3c3 (ENSJJAG00000004649)	Hecw2 (ENSJJAG00000022806)
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Upper Galilee mountains blind mole rat	MODERN SPECIES	417	ENSNGAG00000023509	ENSNGAG00000022183	Ppil3 (ENSNGAG00000014999)	ENSNGAG00000010384	Bzw1 (ENSNGAG00000014200)	Aox2 (ENSNGAG00000021935) ##12	Aox4 (ENSNGAG00000001220) #12	Aox3 (ENSNGAG00000019159) #12	Aox1 (ENSNGAG00000018103) #13	ENSNGAG00000017175 #14	Kctd18 (ENSNGAG00000011886) #15	Spats2l (ENSNGAG00000009131) #16	Maip1 (ENSNGAG00000013388) #17	Tyw5 (ENSNGAG00000022701) #18	1700066M21Rik (ENSNGAG00000015731) #19	Satb2 (ENSNGAG00000023604) #22	Plcl1 (ENSNGAG00000017912) #23	ENSNGAG00000014596 #24
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Murinae	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mus	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.c #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.p	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.c #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b.a.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.p	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.c #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b.a.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929.b	ENSGT00390000005285
spretus	MODERN SPECIES		Hycc2 (MGP_SPRETEiJ_G0014973)	Orc2 (MGP_SPRETEiJ_G0014972)	Nif3l1 (MGP_SPRETEiJ_G0014971)	Ppil3 (MGP_SPRETEiJ_G0014970)	Clk1 (MGP_SPRETEiJ_G0014969)	Bzw1 (MGP_SPRETEiJ_G0014968)	Aox2 (MGP_SPRETEiJ_G0014967) ##12	Aox4 (MGP_SPRETEiJ_G0014966) #12	Aox3 (MGP_SPRETEiJ_G0014965) #12	Aox1 (MGP_SPRETEiJ_G0014964) #13	Sgo2a (MGP_SPRETEiJ_G0014963) #14	Kctd18 (MGP_SPRETEiJ_G0014962) #15	Spats2l (MGP_SPRETEiJ_G0014961) #16	Maip1 (MGP_SPRETEiJ_G0014960) #17	Tyw5 (MGP_SPRETEiJ_G0014959) #18	Satb2 (MGP_SPRETEiJ_G0014957) #22	Hsfy2 (MGP_SPRETEiJ_G0014956)	Plcl1 (MGP_SPRETEiJ_G0014955) #23	MGP_SPRETEiJ_G0014954 #24	Mars2 (MGP_SPRETEiJ_G0014953) #25	Rftn2 (MGP_SPRETEiJ_G0014952) #26	Mob4 (MGP_SPRETEiJ_G0014951)	MGP_SPRETEiJ_G0014950 ##27	MGP_SPRETEiJ_G0014949 ##28	MGP_SPRETEiJ_G0014948 #29	Sf3b1 (MGP_SPRETEiJ_G0014947) #30	Ankrd44 (MGP_SPRETEiJ_G0014946)	MGP_SPRETEiJ_G0014945	Gtf3c3 (MGP_SPRETEiJ_G0014944)	Ccdc150 (MGP_SPRETEiJ_G0014943)	Hecw2 (MGP_SPRETEiJ_G0014942)
Steppe mouse	MODERN SPECIES	84													Maip1 (ENSMSIG00000012877) #17	Tyw5 (ENSMSIG00000012899) #18	1700066M21Rik (ENSMSIG00000012910) #19	Satb2 (ENSMSIG00000012940) #22	Hsfy2 (ENSMSIG00000013021)
Mouse	MODERN SPECIES		Orc2 (ENSMUSG00000026037)	Nif3l1 (ENSMUSG00000026036)	Ppil3 (ENSMUSG00000026035)	Clk1 (ENSMUSG00000026034)	Bzw1 (ENSMUSG00000051223)	Aox2 (ENSMUSG00000079554) ##12	Aox4 (ENSMUSG00000038242) #12	Aox3 (ENSMUSG00000064294) #12	Aox1 (ENSMUSG00000063558) #13	Sgo2a (ENSMUSG00000026039) #14	Kctd18 (ENSMUSG00000054770) #15	Spats2l (ENSMUSG00000038305) #16	Maip1 (ENSMUSG00000025971) #17	Tyw5 (ENSMUSG00000048495) #18	1700066M21Rik (ENSMUSG00000038323) #19	Satb2 (ENSMUSG00000038331) #22	Hsfy2 (ENSMUSG00000045336)	Plcl1 (ENSMUSG00000038349) #23	Boll (ENSMUSG00000025977) #24	Mars2 (ENSMUSG00000046994) #25	Rftn2 (ENSMUSG00000025978) #26	Mob4 (ENSMUSG00000025979)	Hspe1 (ENSMUSG00000073676) ##27	Hspd1 (ENSMUSG00000025980) ##28	Coq10b (ENSMUSG00000025981) #29	Sf3b1 (ENSMUSG00000025982) #30	Ankrd44 (ENSMUSG00000052331)	Pgap1 (ENSMUSG00000073678)	Gm34066 (ENSMUSG00000109809)	Gtf3c3 (ENSMUSG00000041303)	Ccdc150 (ENSMUSG00000025983)
Ryukyu mouse	MODERN SPECIES		Nif3l1 (MGP_CAROLIEiJ_G0014165)	Ppil3 (MGP_CAROLIEiJ_G0014164)	Clk1 (MGP_CAROLIEiJ_G0014163)	Bzw1 (MGP_CAROLIEiJ_G0014162)	Aox2 (MGP_CAROLIEiJ_G0014161) ##12	Aox4 (MGP_CAROLIEiJ_G0014160) #12	Aox3 (MGP_CAROLIEiJ_G0014159) #12	Aox1 (MGP_CAROLIEiJ_G0014158) #13	MGP_CAROLIEiJ_G0014157 #14	MGP_CAROLIEiJ_G0014156 #14	Kctd18 (MGP_CAROLIEiJ_G0014155) #15	Spats2l (MGP_CAROLIEiJ_G0014154) #16	Maip1 (MGP_CAROLIEiJ_G0014153) #17	Tyw5 (MGP_CAROLIEiJ_G0014152) #18	1700066M21Rik (MGP_CAROLIEiJ_G0014151) #19	Satb2 (MGP_CAROLIEiJ_G0014150) #22	Hsfy2 (MGP_CAROLIEiJ_G0014149)	Plcl1 (MGP_CAROLIEiJ_G0014148) #23	Mars2 (MGP_CAROLIEiJ_G0014147) #25	Rftn2 (MGP_CAROLIEiJ_G0014146) #26	Mob4 (MGP_CAROLIEiJ_G0014145)	MGP_CAROLIEiJ_G0014144 ##27	Hspd1 (MGP_CAROLIEiJ_G0014143) ##28	Coq10b (MGP_CAROLIEiJ_G0014142) #29	Sf3b1 (MGP_CAROLIEiJ_G0014141) #30	Ankrd44 (MGP_CAROLIEiJ_G0014140)	Pgap1 (MGP_CAROLIEiJ_G0014139)	MGP_CAROLIEiJ_G0014138	Ccdc150 (MGP_CAROLIEiJ_G0014137)	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)
Shrew mouse	MODERN SPECIES	18	Hycc2 (MGP_PahariEiJ_G0027405)	Orc2 (MGP_PahariEiJ_G0027404)	Nif3l1 (MGP_PahariEiJ_G0027403)	Ppil3 (MGP_PahariEiJ_G0027402)	Clk1 (MGP_PahariEiJ_G0027401)	Bzw1 (MGP_PahariEiJ_G0027400)	Aox4 (MGP_PahariEiJ_G0027399) #12	Aox3 (MGP_PahariEiJ_G0027398) #12	Aox1 (MGP_PahariEiJ_G0027397) #13	Sgo2a (MGP_PahariEiJ_G0027396) #14	Kctd18 (MGP_PahariEiJ_G0027395) #15	Spats2l (MGP_PahariEiJ_G0027394) #16	Maip1 (MGP_PahariEiJ_G0027393) #17	Tyw5 (MGP_PahariEiJ_G0027392) #18	1700066M21Rik (MGP_PahariEiJ_G0027391) #19	Satb2 (MGP_PahariEiJ_G0027390) #22	Hsfy2 (MGP_PahariEiJ_G0027389)	Plcl1 (MGP_PahariEiJ_G0027388) #23	Boll (MGP_PahariEiJ_G0027387) #24	Mars2 (MGP_PahariEiJ_G0027386) #25	Rftn2 (MGP_PahariEiJ_G0027385) #26	MGP_PahariEiJ_G0027384	MGP_PahariEiJ_G0027383 ##27	MGP_PahariEiJ_G0027382 ##28	Coq10b (MGP_PahariEiJ_G0027381) #29	Ankrd44 (MGP_PahariEiJ_G0027379)	Pgap1 (MGP_PahariEiJ_G0027378)	Gtf3c3 (MGP_PahariEiJ_G0027377)	Ccdc150 (MGP_PahariEiJ_G0027376)	Hecw2 (MGP_PahariEiJ_G0027375)	Stk17b (MGP_PahariEiJ_G0027374)
Rat	MODERN SPECIES	19	Orc2 (ENSRNOG00000012558)	Nif3l1 (ENSRNOG00000013446)	Ppil3 (ENSRNOG00000013636)	Clk1 (ENSRNOG00000025768)	Bzw1 (ENSRNOG00000013977)	Aox2 (ENSRNOG00000033923) ##12	ENSRNOG00000068995	Aox3 (ENSRNOG00000014555) #12	Aox1 (ENSRNOG00000015354) #13	Sgo2 (ENSRNOG00000027035) #14	Kctd18 (ENSRNOG00000027091) #15	Spats2l (ENSRNOG00000016012) #16	Maip1 (ENSRNOG00000015983) #17	Tyw5 (ENSRNOG00000010100) #18	RGD1306941 (ENSRNOG00000010185) #19	Satb2 (ENSRNOG00000010188) #22	Hsfy2 (ENSRNOG00000038569)	Plcl1 (ENSRNOG00000032659) #23	Boll (ENSRNOG00000054379) #24	Mars2 (ENSRNOG00000065339) #25	AABR07067762.1 (ENSRNOG00000055383)	Rftn2 (ENSRNOG00000015594) #26	Mob4 (ENSRNOG00000014980)	Hspe1 (ENSRNOG00000051624) ##27	Hspd1 (ENSRNOG00000014525) ##28	Coq10b (ENSRNOG00000014456) #29	Sf3b1 (ENSRNOG00000013516) #30	Tmem258b (ENSRNOG00000032740)	Ankrd44 (ENSRNOG00000021384)	Pgap1 (ENSRNOG00000013388)	LOC686030 (ENSRNOG00000067303)
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b.w.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.b ##27	ENSGT00390000005727.a.b.b.w.a ##28	ENSGT00390000005727.a.b.b.w.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Chinese hamster chok1gshd	MODERN SPECIES	1	Orc2 (ENSCGRG00001016911)	ENSCGRG00001018137	Ppil3 (ENSCGRG00001021470)	Clk1 (ENSCGRG00001018410)	Bzw1 (ENSCGRG00001017178)	Aox2 (ENSCGRG00001017735) ##12	Aox4 (ENSCGRG00001016089) #12	Aox3 (ENSCGRG00001016559) #12	Aox1 (ENSCGRG00001018485) #13	ENSCGRG00001016045 #14	Kctd18 (ENSCGRG00001016666) #15	Spats2l (ENSCGRG00001019123) #16	Maip1 (ENSCGRG00001018639) #17	Tyw5 (ENSCGRG00001015297) #18	1700066M21Rik (ENSCGRG00001016585) #19	Satb2 (ENSCGRG00001019669) #22	Hsfy2 (ENSCGRG00001009926)	ENSCGRG00001010393	Plcl1 (ENSCGRG00001015676) #23	ENSCGRG00001009537	Boll (ENSCGRG00001020168) #24	Mars2 (ENSCGRG00001010364) #25	Rftn2 (ENSCGRG00001017788) #26	Mob4 (ENSCGRG00001024203)	ENSCGRG00001015345 ##27	HSPD1 (ENSCGRG00001021126) ##28	Coq10b (ENSCGRG00001015271) #29	Sf3b1 (ENSCGRG00001016990) #30	Ankrd44 (ENSCGRG00001018584)	Pgap1 (ENSCGRG00001016707)	Gtf3c3 (ENSCGRG00001014543)
Golden Hamster	MODERN SPECIES	723									Aox1 (ENSMAUG00000014270) #13	ENSMAUG00000000248 #14	Kctd18 (ENSMAUG00000019856) #15	Spats2l (ENSMAUG00000016921) #16	Maip1 (ENSMAUG00000007424) #17	Tyw5 (ENSMAUG00000009449) #18	1700066M21Rik (ENSMAUG00000017438) #19	Satb2 (ENSMAUG00000008545) #22	Plcl1 (ENSMAUG00000003415) #23	Boll (ENSMAUG00000008224) #24	Mars2 (ENSMAUG00000017224) #25	Rftn2 (ENSMAUG00000014348) #26	ENSMAUG00000007042	ENSMAUG00000017789 ##28	Coq10b (ENSMAUG00000010644) #29	Sf3b1 (ENSMAUG00000009071) #30	Ankrd44 (ENSMAUG00000019633)	Pgap1 (ENSMAUG00000018155)	Gtf3c3 (ENSMAUG00000018770)	Ccdc150 (ENSMAUG00000015624)	Hecw2 (ENSMAUG00000011882)	Stk17b (ENSMAUG00000018862)	ENSMAUG00000020218
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT00390000006350.m.a.c.a.`b ##27	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.ab ##27	ENSGT00390000005727.a.b.b.w.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929
Prairie vole	MODERN SPECIES	91	Hycc2 (ENSMOCG00000012367)	Orc2 (ENSMOCG00000016158)	Nif3l1 (ENSMOCG00000012327)	ENSMOCG00000013096	ENSMOCG00000005608	Bzw1 (ENSMOCG00000008375)	Aox2 (ENSMOCG00000018237) ##12	Aox4 (ENSMOCG00000015766) #12	Aox1 (ENSMOCG00000001195) #13	ENSMOCG00000012099 #14	Kctd18 (ENSMOCG00000018835) #15	Spats2l (ENSMOCG00000006136) #16	Maip1 (ENSMOCG00000008182) #17	Tyw5 (ENSMOCG00000018540) #18	1700066M21Rik (ENSMOCG00000018970) #19	ENSMOCG00000005756 #22	Hsfy2 (ENSMOCG00000013974)	Plcl1 (ENSMOCG00000014862) #23	Boll (ENSMOCG00000022824) #24	Mars2 (ENSMOCG00000006676) #25	Rftn2 (ENSMOCG00000020060) #26	ENSMOCG00000000253 ##27	Mob4 (ENSMOCG00000020652)	ENSMOCG00000002787 ##28	Coq10b (ENSMOCG00000012636) #29	Sf3b1 (ENSMOCG00000000455) #30	ENSMOCG00000021330	Pgap1 (ENSMOCG00000013936)	Gtf3c3 (ENSMOCG00000019654)	Ccdc150 (ENSMOCG00000001399)	Hecw2 (ENSMOCG00000012140)
Northern American deer mouse	MODERN SPECIES	4	Hycc2 (ENSPEMG00000014604)	Orc2 (ENSPEMG00000010035)	Nif3l1 (ENSPEMG00000023040)	Ppil3 (ENSPEMG00000011585)	Clk1 (ENSPEMG00000022508)	ENSPEMG00000013940	Aox2 (ENSPEMG00000022861) ##12	ENSPEMG00000027085 #12	Aox1 (ENSPEMG00000000656) #13	ENSPEMG00000020091 #14	Kctd18 (ENSPEMG00000028635) #15	Spats2l (ENSPEMG00000020003) #16	Maip1 (ENSPEMG00000015287) #17	Tyw5 (ENSPEMG00000009506) #18	1700066M21Rik (ENSPEMG00000001657) #19	Satb2 (ENSPEMG00000013811) #22	Hsfy2 (ENSPEMG00000029057)	Plcl1 (ENSPEMG00000001849) #23	ENSPEMG00000024520	Boll (ENSPEMG00000018168) #24	Mars2 (ENSPEMG00000008377) #25	Rftn2 (ENSPEMG00000000048) #26	Mob4 (ENSPEMG00000017361)	ENSPEMG00000029712	ENSPEMG00000010504 ##27	Hspd1 (ENSPEMG00000015411) ##28	Coq10b (ENSPEMG00000005817) #29	Sf3b1 (ENSPEMG00000010699) #30	Ankrd44 (ENSPEMG00000016873)	Pgap1 (ENSPEMG00000008939)	ENSPEMG00000024521
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Rabbit	MODERN SPECIES	18	PPIL3 (ENSOCUG00000010661)	CLK1 (ENSOCUG00000010653)	ENSOCUG00000010647	ENSOCUG00000026480 ##12	ENSOCUG00000024593 #12	ENSOCUG00000035654 #12	AOX1 (ENSOCUG00000013971) #13	ENSOCUG00000000547 #14	ENSOCUG00000037416 #14	KCTD18 (ENSOCUG00000011556) #15	SPATS2L (ENSOCUG00000011549) #16	ENSOCUG00000017946 #17	ENSOCUG00000035705 #18	ENSOCUG00000016464 #18	C2orf69 (ENSOCUG00000016473) #19	SATB2 (ENSOCUG00000009700) #22	PLCL1 (ENSOCUG00000013978) #23	BOLL (ENSOCUG00000013979) #24	MARS2 (ENSOCUG00000017798) #25	RFTN2 (ENSOCUG00000003993) #26	ENSOCUG00000005712	HSPE1 (ENSOCUG00000010360) ##27	HSPD1 (ENSOCUG00000012736) ##28	COQ10B (ENSOCUG00000012735) #29	ENSOCUG00000000205 ##21	ENSOCUG00000029492 #30	ENSOCUG00000012722 #30	ANKRD44 (ENSOCUG00000009183)	PGAP1 (ENSOCUG00000002192)	C2orf66 (ENSOCUG00000028999)	GTF3C3 (ENSOCUG00000000463)
Pika	MODERN SPECIES	573													MAIP1 (ENSOPRG00000004142) #17	TYW5 (ENSOPRG00000004133) #18	C2orf69 (ENSOPRG00000004115) #19	SATB2 (ENSOPRG00000003979) #22
Tree shrew	MODERN SPECIES	795																SATB2 (ENSTBEG00000002443) #22