Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000008096.B #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000008096.B #22
Vertebrata	ANCESTRAL SPECIES	234															ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00530000063609 #26
Gnathostomata	ANCESTRAL SPECIES	73	ENSGT00940000160342	ENSGT00470000042284	ENSGT00940000155792	ENSGT00940000153335.a.a	ENSGT00390000003896	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT00390000006350 #27	ENSGT00390000005727 #28	ENSGT00940000155367 #29	ENSGT00390000018393 #30
Euteleostomi	ANCESTRAL SPECIES	3					ENSGT00390000003896	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282	ENSGT00940000160335
Sarcopterygii	ANCESTRAL SPECIES	73										ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282	ENSGT00940000160335
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00940000160319	ENSGT00940000164225	ENSGT00940000160994	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282	ENSGT00940000160335
Amniota	ANCESTRAL SPECIES	6	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b #12	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a #27	ENSGT00940000167249	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mammalia	ANCESTRAL SPECIES	6	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.b ##27	ENSGT00390000005727.a.b ##28	ENSGT00940000167249	ENSGT00390000006350.m.a #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468
Theria	ANCESTRAL SPECIES	5	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.b ##27	ENSGT00390000005727.a.b ##28	ENSGT00940000167249	ENSGT00390000006350.m.a #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484
Eutheria	ANCESTRAL SPECIES	10	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.b #27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.b.a.b #27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.b ##27	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Glires	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.v	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000012178.g.a.a #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.v ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Marmotini_b	ANCESTRAL SPECIES	91						ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000012178.g.a.a #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.v ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Arctic ground squirrel	MODERN SPECIES	210						ENSUPAG00010015923 #12	AOX1 (ENSUPAG00010015861) #13	SGO2 (ENSUPAG00010015843) #14	KCTD18 (ENSUPAG00010015819) #15	SPATS2L (ENSUPAG00010015777) #16	MAIP1 (ENSUPAG00010015760) #17	TYW5 (ENSUPAG00010015739) #18	C2orf69 (ENSUPAG00010015730) #19	FTCDNL1 (ENSUPAG00010015721) #20	ENSUPAG00010015718 #21	SATB2 (ENSUPAG00010015643) #22	PLCL1 (ENSUPAG00010015612) #23	BOLL (ENSUPAG00010015589) #24	MARS2 (ENSUPAG00010015585) #25	RFTN2 (ENSUPAG00010015580) #26	ENSUPAG00010015569 #27	ENSUPAG00010015563 #28	COQ10B (ENSUPAG00010015540) #29	SF3B1 (ENSUPAG00010015518) #30
Squirrel	MODERN SPECIES	106																SATB2 (ENSSTOG00000024964) #22	PLCL1 (ENSSTOG00000026164) #23	BOLL (ENSSTOG00000003536) #24	MARS2 (ENSSTOG00000015451) #25	RFTN2 (ENSSTOG00000015446) #26	MOB4 (ENSSTOG00000021024)	ENSSTOG00000031333 ##27	ENSSTOG00000028470 ##28	COQ10B (ENSSTOG00000011048) #29	SF3B1 (ENSSTOG00000011034) #30	ANKRD44 (ENSSTOG00000012130)	PGAP1 (ENSSTOG00000010633)	GTF3C3 (ENSSTOG00000011894)	ENSSTOG00000014552	HECW2 (ENSSTOG00000015188)	STK17B (ENSSTOG00000020599)
Alpin marmot	MODERN SPECIES	8	PPIL3 (ENSMMMG00000012069)	CLK1 (ENSMMMG00000012051)	ENSMMMG00000012026	ENSMMMG00000011976 ##12	ENSMMMG00000011959	ENSMMMG00000011912 #12	AOX1 (ENSMMMG00000011886) #13	ENSMMMG00000011877 #14	KCTD18 (ENSMMMG00000011839) #15	SPATS2L (ENSMMMG00000011689) #16	MAIP1 (ENSMMMG00000011679) #17	TYW5 (ENSMMMG00000011668) #18	C2orf69 (ENSMMMG00000011660) #19	FTCDNL1 (ENSMMMG00000011655) #20	ENSMMMG00000011650 #21	SATB2 (ENSMMMG00000011551) #22	ENSMMMG00000011481	PLCL1 (ENSMMMG00000011429) #23	BOLL (ENSMMMG00000011354) #24	MARS2 (ENSMMMG00000011347) #25	RFTN2 (ENSMMMG00000011220) #26	ENSMMMG00000011174	ENSMMMG00000011161 ##27	ENSMMMG00000011138 ##28	ENSMMMG00000011101 #29	SF3B1 (ENSMMMG00000011081) #30	ANKRD44 (ENSMMMG00000010980)	PGAP1 (ENSMMMG00000010912)	GTF3C3 (ENSMMMG00000010874)	ENSMMMG00000010858	ENSMMMG00000010842
Eurasian red squirrel	MODERN SPECIES	12	NIF3L1 (ENSSVLG00005004091)	PPIL3 (ENSSVLG00005004070)	CLK1 (ENSSVLG00005004020)	BZW1 (ENSSVLG00005003945)	ENSSVLG00005003845 ##12	ENSSVLG00005003767 #12	AOX1 (ENSSVLG00005003683) #13	SGO2 (ENSSVLG00005003633) #14	ENSSVLG00005003604 #15	SPATS2L (ENSSVLG00005003512) #16	MAIP1 (ENSSVLG00005003433) #17	TYW5 (ENSSVLG00005003405) #18	C2orf69 (ENSSVLG00005003387) #19	FTCDNL1 (ENSSVLG00005003343) #20	ENSSVLG00005003317	SATB2 (ENSSVLG00005003278) #22	PLCL1 (ENSSVLG00005003227) #23	ENSSVLG00005003207	BOLL (ENSSVLG00005003123) #24	MARS2 (ENSSVLG00005003085) #25	RFTN2 (ENSSVLG00005003057) #26	MOB4 (ENSSVLG00005002989)	HSPE1 (ENSSVLG00005002940) ##27	ENSSVLG00005002895 ##28	ENSSVLG00005002862 #29	SF3B1 (ENSSVLG00005002801) #30	ANKRD44 (ENSSVLG00005002705)	PGAP1 (ENSSVLG00005002564)	C2orf66 (ENSSVLG00005002524)	ENSSVLG00005002519	GTF3C3 (ENSSVLG00005002487)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.b.b.a.b ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Degu	MODERN SPECIES	66	ENSODEG00000007860	ORC2 (ENSODEG00000008853)	NIF3L1 (ENSODEG00000008894)	PPIL3 (ENSODEG00000007592)	CLK1 (ENSODEG00000009021)	ENSODEG00000019563	ENSODEG00000008411	ENSODEG00000008135 ##12	ENSODEG00000011138 #12	AOX1 (ENSODEG00000012914) #13	ENSODEG00000009211 #15	SPATS2L (ENSODEG00000009851) #16	MAIP1 (ENSODEG00000008914) #17	TYW5 (ENSODEG00000009836) #18	C2orf69 (ENSODEG00000008700) #19	SATB2 (ENSODEG00000008383) #22	PLCL1 (ENSODEG00000008918) #23	BOLL (ENSODEG00000008471) #24	RFTN2 (ENSODEG00000008704) #26	MOB4 (ENSODEG00000009609)	ENSODEG00000019874	ENSODEG00000011397 ##27	ENSODEG00000009026 ##28	COQ10B (ENSODEG00000008396) #29	ENSODEG00000011153 #30	ENSODEG00000019820	ENSODEG00000008898	ENSODEG00000008698	ENSODEG00000009525	PGAP1 (ENSODEG00000009932)	ENSODEG00000009843
Long-tailed chinchilla	MODERN SPECIES	110	HYCC2 (ENSCLAG00000011177)	ORC2 (ENSCLAG00000013209)	NIF3L1 (ENSCLAG00000013524)	PPIL3 (ENSCLAG00000014050)	CLK1 (ENSCLAG00000011455)	BZW1 (ENSCLAG00000012079)	ENSCLAG00000011199 ##12	ENSCLAG00000014402 #12	AOX1 (ENSCLAG00000011481) #13	ENSCLAG00000012456 #14	ENSCLAG00000014377 #15	SPATS2L (ENSCLAG00000013167) #16	MAIP1 (ENSCLAG00000011913) #17	TYW5 (ENSCLAG00000012009) #18	C2orf69 (ENSCLAG00000012813) #19	SATB2 (ENSCLAG00000016994) #22	PLCL1 (ENSCLAG00000016098) #23	BOLL (ENSCLAG00000017375) #24	MARS2 (ENSCLAG00000010386) #25	RFTN2 (ENSCLAG00000009821) #26	MOB4 (ENSCLAG00000010086)	ENSCLAG00000010686 ##27	HSPD1 (ENSCLAG00000011541) ##28	COQ10B (ENSCLAG00000017377) #29	SF3B1 (ENSCLAG00000014767) #30	ANKRD44 (ENSCLAG00000015396)	PGAP1 (ENSCLAG00000011838)	GTF3C3 (ENSCLAG00000009827)	CCDC150 (ENSCLAG00000012365)	HECW2 (ENSCLAG00000011628)	STK17B (ENSCLAG00000012520)
Guinea pig	MODERN SPECIES	104	HYCC2 (ENSCPOG00000010108)	ORC2 (ENSCPOG00000004552)	NIF3L1 (ENSCPOG00000008572)	PPIL3 (ENSCPOG00000008570)	CLK1 (ENSCPOG00000027067)	ENSCPOG00000010449	ENSCPOG00000019962 ##12	ENSCPOG00000033032 #12	Aox1 (ENSCPOG00000025955) #13	ENSCPOG00000002722 #14	ENSCPOG00000012077 #15	SPATS2L (ENSCPOG00000003190) #16	MAIP1 (ENSCPOG00000003800) #17	TYW5 (ENSCPOG00000035856) #18	C2orf69 (ENSCPOG00000009934) #19	SATB2 (ENSCPOG00000015198) #22	PLCL1 (ENSCPOG00000011478) #23	BOLL (ENSCPOG00000000390) #24	MARS2 (ENSCPOG00000025973) #25	RFTN2 (ENSCPOG00000010463) #26	MOB4 (ENSCPOG00000012746)	ENSCPOG00000027474 ##27	HSPD1 (ENSCPOG00000002588) ##28	COQ10B (ENSCPOG00000002673) #29	SF3B1 (ENSCPOG00000009353) #30	ANKRD44 (ENSCPOG00000026494)	PGAP1 (ENSCPOG00000003177)	GTF3C3 (ENSCPOG00000006643)	CCDC150 (ENSCPOG00000031267)	ENSCPOG00000040067	HECW2 (ENSCPOG00000008908)
Naked mole-rat female	MODERN SPECIES	22	PPIL3 (ENSHGLG00000035729)	Clk1 (ENSHGLG00000011322)	BZW1 (ENSHGLG00000011961)	ENSHGLG00000012205 ##12	Aox4 (ENSHGLG00000012471) #12	AOX1 (ENSHGLG00000012876) #13	SGO2 (ENSHGLG00000015359) #14	ENSHGLG00000047532	ENSHGLG00000015370 #15	SPATS2L (ENSHGLG00000015420) #16	ENSHGLG00000017615	MAIP1 (ENSHGLG00000017548) #17	TYW5 (ENSHGLG00000017557) #18	C2orf69 (ENSHGLG00000040936) #19	ENSHGLG00000020697	SATB2 (ENSHGLG00000015892) #22	ENSHGLG00000043283	PLCL1 (ENSHGLG00000015970) #23	BOLL (ENSHGLG00000017562) #24	MARS2 (ENSHGLG00000049320) #25	RFTN2 (ENSHGLG00000017636) #26	MOB4 (ENSHGLG00000050196)	ENSHGLG00000042669 ##27	HSPD1 (ENSHGLG00000007927) ##28	ENSHGLG00000038699 #29	ENSHGLG00000008285 #30	ANKRD44 (ENSHGLG00000008625)	ENSHGLG00000049153	ENSHGLG00000040344	ENSHGLG00000008965	ENSHGLG00000042696
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000024018	Hycc2 (ENSDORG00000029531)	Orc2 (ENSDORG00000007391)	Nif3l1 (ENSDORG00000007390)	Ppil3 (ENSDORG00000007389)	Clk1 (ENSDORG00000007388)	Bzw1 (ENSDORG00000029865)	Aox2 (ENSDORG00000026718) ##12	Aox4 (ENSDORG00000026668) #12	Aox3 (ENSDORG00000025305) #12	Aox1 (ENSDORG00000004358) #13	Kctd18 (ENSDORG00000007817) #15	Spats2l (ENSDORG00000007816) #16	Maip1 (ENSDORG00000012569) #17	Tyw5 (ENSDORG00000012567) #18	Satb2 (ENSDORG00000001292) #22	Plcl1 (ENSDORG00000000485) #23	Boll (ENSDORG00000010791) #24	Mars2 (ENSDORG00000010789) #25	Rftn2 (ENSDORG00000008999) #26	Mob4 (ENSDORG00000023241)	ENSDORG00000011071 ##27	Hspd1 (ENSDORG00000011069) ##28	Coq10b (ENSDORG00000025804) #29	Sf3b1 (ENSDORG00000002399) #30	ENSDORG00000029693	ENSDORG00000024945	Pgap1 (ENSDORG00000000406)	Gtf3c3 (ENSDORG00000000403)	Hecw2 (ENSDORG00000014759)	Stk17b (ENSDORG00000029601)
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000013473	Clk1 (ENSJJAG00000024354)	Bzw1 (ENSJJAG00000022065)	Aox2 (ENSJJAG00000011668) ##12	Aox4 (ENSJJAG00000017799) #12	Aox1 (ENSJJAG00000019598) #13	ENSJJAG00000015058 #14	Kctd18 (ENSJJAG00000016069) #15	Spats2l (ENSJJAG00000019268) #16	ENSJJAG00000010933	ENSJJAG00000012063	Maip1 (ENSJJAG00000023816) #17	Tyw5 (ENSJJAG00000019361) #18	1700066M21Rik (ENSJJAG00000019976) #19	ENSJJAG00000023987	Satb2 (ENSJJAG00000019883) #22	ENSJJAG00000012932	Plcl1 (ENSJJAG00000024297) #23	Boll (ENSJJAG00000015508) #24	Mars2 (ENSJJAG00000023940) #25	Rftn2 (ENSJJAG00000002223) #26	ENSJJAG00000009865	ENSJJAG00000012025 ##27	ENSJJAG00000016713 ##28	Coq10b (ENSJJAG00000020646) #29	Sf3b1 (ENSJJAG00000010903) #30	ENSJJAG00000018305	Ankrd44 (ENSJJAG00000016107)	Pgap1 (ENSJJAG00000009924)	Gtf3c3 (ENSJJAG00000004649)	Hecw2 (ENSJJAG00000022806)
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Upper Galilee mountains blind mole rat	MODERN SPECIES	417	ENSNGAG00000023509	ENSNGAG00000022183	Ppil3 (ENSNGAG00000014999)	ENSNGAG00000010384	Bzw1 (ENSNGAG00000014200)	Aox2 (ENSNGAG00000021935) ##12	Aox4 (ENSNGAG00000001220) #12	Aox3 (ENSNGAG00000019159) #12	Aox1 (ENSNGAG00000018103) #13	ENSNGAG00000017175 #14	Kctd18 (ENSNGAG00000011886) #15	Spats2l (ENSNGAG00000009131) #16	Maip1 (ENSNGAG00000013388) #17	Tyw5 (ENSNGAG00000022701) #18	1700066M21Rik (ENSNGAG00000015731) #19	Satb2 (ENSNGAG00000023604) #22	Plcl1 (ENSNGAG00000017912) #23	ENSNGAG00000014596 #24
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Murinae	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mus	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.c #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.p	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.c #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b.a.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.p	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b.m.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.c #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b.a.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929.b	ENSGT00390000005285
spretus	MODERN SPECIES		Hycc2 (MGP_SPRETEiJ_G0014973)	Orc2 (MGP_SPRETEiJ_G0014972)	Nif3l1 (MGP_SPRETEiJ_G0014971)	Ppil3 (MGP_SPRETEiJ_G0014970)	Clk1 (MGP_SPRETEiJ_G0014969)	Bzw1 (MGP_SPRETEiJ_G0014968)	Aox2 (MGP_SPRETEiJ_G0014967) ##12	Aox4 (MGP_SPRETEiJ_G0014966) #12	Aox3 (MGP_SPRETEiJ_G0014965) #12	Aox1 (MGP_SPRETEiJ_G0014964) #13	Sgo2a (MGP_SPRETEiJ_G0014963) #14	Kctd18 (MGP_SPRETEiJ_G0014962) #15	Spats2l (MGP_SPRETEiJ_G0014961) #16	Maip1 (MGP_SPRETEiJ_G0014960) #17	Tyw5 (MGP_SPRETEiJ_G0014959) #18	Satb2 (MGP_SPRETEiJ_G0014957) #22	Hsfy2 (MGP_SPRETEiJ_G0014956)	Plcl1 (MGP_SPRETEiJ_G0014955) #23	MGP_SPRETEiJ_G0014954 #24	Mars2 (MGP_SPRETEiJ_G0014953) #25	Rftn2 (MGP_SPRETEiJ_G0014952) #26	Mob4 (MGP_SPRETEiJ_G0014951)	MGP_SPRETEiJ_G0014950 ##27	MGP_SPRETEiJ_G0014949 ##28	MGP_SPRETEiJ_G0014948 #29	Sf3b1 (MGP_SPRETEiJ_G0014947) #30	Ankrd44 (MGP_SPRETEiJ_G0014946)	MGP_SPRETEiJ_G0014945	Gtf3c3 (MGP_SPRETEiJ_G0014944)	Ccdc150 (MGP_SPRETEiJ_G0014943)	Hecw2 (MGP_SPRETEiJ_G0014942)
Steppe mouse	MODERN SPECIES	84													Maip1 (ENSMSIG00000012877) #17	Tyw5 (ENSMSIG00000012899) #18	1700066M21Rik (ENSMSIG00000012910) #19	Satb2 (ENSMSIG00000012940) #22	Hsfy2 (ENSMSIG00000013021)
Mouse	MODERN SPECIES		Orc2 (ENSMUSG00000026037)	Nif3l1 (ENSMUSG00000026036)	Ppil3 (ENSMUSG00000026035)	Clk1 (ENSMUSG00000026034)	Bzw1 (ENSMUSG00000051223)	Aox2 (ENSMUSG00000079554) ##12	Aox4 (ENSMUSG00000038242) #12	Aox3 (ENSMUSG00000064294) #12	Aox1 (ENSMUSG00000063558) #13	Sgo2a (ENSMUSG00000026039) #14	Kctd18 (ENSMUSG00000054770) #15	Spats2l (ENSMUSG00000038305) #16	Maip1 (ENSMUSG00000025971) #17	Tyw5 (ENSMUSG00000048495) #18	1700066M21Rik (ENSMUSG00000038323) #19	Satb2 (ENSMUSG00000038331) #22	Hsfy2 (ENSMUSG00000045336)	Plcl1 (ENSMUSG00000038349) #23	Boll (ENSMUSG00000025977) #24	Mars2 (ENSMUSG00000046994) #25	Rftn2 (ENSMUSG00000025978) #26	Mob4 (ENSMUSG00000025979)	Hspe1 (ENSMUSG00000073676) ##27	Hspd1 (ENSMUSG00000025980) ##28	Coq10b (ENSMUSG00000025981) #29	Sf3b1 (ENSMUSG00000025982) #30	Ankrd44 (ENSMUSG00000052331)	Pgap1 (ENSMUSG00000073678)	Gm34066 (ENSMUSG00000109809)	Gtf3c3 (ENSMUSG00000041303)	Ccdc150 (ENSMUSG00000025983)
Ryukyu mouse	MODERN SPECIES		Nif3l1 (MGP_CAROLIEiJ_G0014165)	Ppil3 (MGP_CAROLIEiJ_G0014164)	Clk1 (MGP_CAROLIEiJ_G0014163)	Bzw1 (MGP_CAROLIEiJ_G0014162)	Aox2 (MGP_CAROLIEiJ_G0014161) ##12	Aox4 (MGP_CAROLIEiJ_G0014160) #12	Aox3 (MGP_CAROLIEiJ_G0014159) #12	Aox1 (MGP_CAROLIEiJ_G0014158) #13	MGP_CAROLIEiJ_G0014157 #14	MGP_CAROLIEiJ_G0014156 #14	Kctd18 (MGP_CAROLIEiJ_G0014155) #15	Spats2l (MGP_CAROLIEiJ_G0014154) #16	Maip1 (MGP_CAROLIEiJ_G0014153) #17	Tyw5 (MGP_CAROLIEiJ_G0014152) #18	1700066M21Rik (MGP_CAROLIEiJ_G0014151) #19	Satb2 (MGP_CAROLIEiJ_G0014150) #22	Hsfy2 (MGP_CAROLIEiJ_G0014149)	Plcl1 (MGP_CAROLIEiJ_G0014148) #23	Mars2 (MGP_CAROLIEiJ_G0014147) #25	Rftn2 (MGP_CAROLIEiJ_G0014146) #26	Mob4 (MGP_CAROLIEiJ_G0014145)	MGP_CAROLIEiJ_G0014144 ##27	Hspd1 (MGP_CAROLIEiJ_G0014143) ##28	Coq10b (MGP_CAROLIEiJ_G0014142) #29	Sf3b1 (MGP_CAROLIEiJ_G0014141) #30	Ankrd44 (MGP_CAROLIEiJ_G0014140)	Pgap1 (MGP_CAROLIEiJ_G0014139)	MGP_CAROLIEiJ_G0014138	Ccdc150 (MGP_CAROLIEiJ_G0014137)	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)
Shrew mouse	MODERN SPECIES	18	Hycc2 (MGP_PahariEiJ_G0027405)	Orc2 (MGP_PahariEiJ_G0027404)	Nif3l1 (MGP_PahariEiJ_G0027403)	Ppil3 (MGP_PahariEiJ_G0027402)	Clk1 (MGP_PahariEiJ_G0027401)	Bzw1 (MGP_PahariEiJ_G0027400)	Aox4 (MGP_PahariEiJ_G0027399) #12	Aox3 (MGP_PahariEiJ_G0027398) #12	Aox1 (MGP_PahariEiJ_G0027397) #13	Sgo2a (MGP_PahariEiJ_G0027396) #14	Kctd18 (MGP_PahariEiJ_G0027395) #15	Spats2l (MGP_PahariEiJ_G0027394) #16	Maip1 (MGP_PahariEiJ_G0027393) #17	Tyw5 (MGP_PahariEiJ_G0027392) #18	1700066M21Rik (MGP_PahariEiJ_G0027391) #19	Satb2 (MGP_PahariEiJ_G0027390) #22	Hsfy2 (MGP_PahariEiJ_G0027389)	Plcl1 (MGP_PahariEiJ_G0027388) #23	Boll (MGP_PahariEiJ_G0027387) #24	Mars2 (MGP_PahariEiJ_G0027386) #25	Rftn2 (MGP_PahariEiJ_G0027385) #26	MGP_PahariEiJ_G0027384	MGP_PahariEiJ_G0027383 ##27	MGP_PahariEiJ_G0027382 ##28	Coq10b (MGP_PahariEiJ_G0027381) #29	Ankrd44 (MGP_PahariEiJ_G0027379)	Pgap1 (MGP_PahariEiJ_G0027378)	Gtf3c3 (MGP_PahariEiJ_G0027377)	Ccdc150 (MGP_PahariEiJ_G0027376)	Hecw2 (MGP_PahariEiJ_G0027375)	Stk17b (MGP_PahariEiJ_G0027374)
Rat	MODERN SPECIES	19	Orc2 (ENSRNOG00000012558)	Nif3l1 (ENSRNOG00000013446)	Ppil3 (ENSRNOG00000013636)	Clk1 (ENSRNOG00000025768)	Bzw1 (ENSRNOG00000013977)	Aox2 (ENSRNOG00000033923) ##12	ENSRNOG00000068995	Aox3 (ENSRNOG00000014555) #12	Aox1 (ENSRNOG00000015354) #13	Sgo2 (ENSRNOG00000027035) #14	Kctd18 (ENSRNOG00000027091) #15	Spats2l (ENSRNOG00000016012) #16	Maip1 (ENSRNOG00000015983) #17	Tyw5 (ENSRNOG00000010100) #18	RGD1306941 (ENSRNOG00000010185) #19	Satb2 (ENSRNOG00000010188) #22	Hsfy2 (ENSRNOG00000038569)	Plcl1 (ENSRNOG00000032659) #23	Boll (ENSRNOG00000054379) #24	Mars2 (ENSRNOG00000065339) #25	AABR07067762.1 (ENSRNOG00000055383)	Rftn2 (ENSRNOG00000015594) #26	Mob4 (ENSRNOG00000014980)	Hspe1 (ENSRNOG00000051624) ##27	Hspd1 (ENSRNOG00000014525) ##28	Coq10b (ENSRNOG00000014456) #29	Sf3b1 (ENSRNOG00000013516) #30	Tmem258b (ENSRNOG00000032740)	Ankrd44 (ENSRNOG00000021384)	Pgap1 (ENSRNOG00000013388)	LOC686030 (ENSRNOG00000067303)
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b.w.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.b ##27	ENSGT00390000005727.a.b.b.w.a ##28	ENSGT00390000005727.a.b.b.w.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Chinese hamster chok1gshd	MODERN SPECIES	1	Orc2 (ENSCGRG00001016911)	ENSCGRG00001018137	Ppil3 (ENSCGRG00001021470)	Clk1 (ENSCGRG00001018410)	Bzw1 (ENSCGRG00001017178)	Aox2 (ENSCGRG00001017735) ##12	Aox4 (ENSCGRG00001016089) #12	Aox3 (ENSCGRG00001016559) #12	Aox1 (ENSCGRG00001018485) #13	ENSCGRG00001016045 #14	Kctd18 (ENSCGRG00001016666) #15	Spats2l (ENSCGRG00001019123) #16	Maip1 (ENSCGRG00001018639) #17	Tyw5 (ENSCGRG00001015297) #18	1700066M21Rik (ENSCGRG00001016585) #19	Satb2 (ENSCGRG00001019669) #22	Hsfy2 (ENSCGRG00001009926)	ENSCGRG00001010393	Plcl1 (ENSCGRG00001015676) #23	ENSCGRG00001009537	Boll (ENSCGRG00001020168) #24	Mars2 (ENSCGRG00001010364) #25	Rftn2 (ENSCGRG00001017788) #26	Mob4 (ENSCGRG00001024203)	ENSCGRG00001015345 ##27	HSPD1 (ENSCGRG00001021126) ##28	Coq10b (ENSCGRG00001015271) #29	Sf3b1 (ENSCGRG00001016990) #30	Ankrd44 (ENSCGRG00001018584)	Pgap1 (ENSCGRG00001016707)	Gtf3c3 (ENSCGRG00001014543)
Golden Hamster	MODERN SPECIES	723									Aox1 (ENSMAUG00000014270) #13	ENSMAUG00000000248 #14	Kctd18 (ENSMAUG00000019856) #15	Spats2l (ENSMAUG00000016921) #16	Maip1 (ENSMAUG00000007424) #17	Tyw5 (ENSMAUG00000009449) #18	1700066M21Rik (ENSMAUG00000017438) #19	Satb2 (ENSMAUG00000008545) #22	Plcl1 (ENSMAUG00000003415) #23	Boll (ENSMAUG00000008224) #24	Mars2 (ENSMAUG00000017224) #25	Rftn2 (ENSMAUG00000014348) #26	ENSMAUG00000007042	ENSMAUG00000017789 ##28	Coq10b (ENSMAUG00000010644) #29	Sf3b1 (ENSMAUG00000009071) #30	Ankrd44 (ENSMAUG00000019633)	Pgap1 (ENSMAUG00000018155)	Gtf3c3 (ENSMAUG00000018770)	Ccdc150 (ENSMAUG00000015624)	Hecw2 (ENSMAUG00000011882)	Stk17b (ENSMAUG00000018862)	ENSMAUG00000020218
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000157452	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT00390000006350.m.a.c.a.`b ##27	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.ab ##27	ENSGT00390000005727.a.b.b.w.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929
Prairie vole	MODERN SPECIES	91	Hycc2 (ENSMOCG00000012367)	Orc2 (ENSMOCG00000016158)	Nif3l1 (ENSMOCG00000012327)	ENSMOCG00000013096	ENSMOCG00000005608	Bzw1 (ENSMOCG00000008375)	Aox2 (ENSMOCG00000018237) ##12	Aox4 (ENSMOCG00000015766) #12	Aox1 (ENSMOCG00000001195) #13	ENSMOCG00000012099 #14	Kctd18 (ENSMOCG00000018835) #15	Spats2l (ENSMOCG00000006136) #16	Maip1 (ENSMOCG00000008182) #17	Tyw5 (ENSMOCG00000018540) #18	1700066M21Rik (ENSMOCG00000018970) #19	ENSMOCG00000005756 #22	Hsfy2 (ENSMOCG00000013974)	Plcl1 (ENSMOCG00000014862) #23	Boll (ENSMOCG00000022824) #24	Mars2 (ENSMOCG00000006676) #25	Rftn2 (ENSMOCG00000020060) #26	ENSMOCG00000000253 ##27	Mob4 (ENSMOCG00000020652)	ENSMOCG00000002787 ##28	Coq10b (ENSMOCG00000012636) #29	Sf3b1 (ENSMOCG00000000455) #30	ENSMOCG00000021330	Pgap1 (ENSMOCG00000013936)	Gtf3c3 (ENSMOCG00000019654)	Ccdc150 (ENSMOCG00000001399)	Hecw2 (ENSMOCG00000012140)
Northern American deer mouse	MODERN SPECIES	4	Hycc2 (ENSPEMG00000014604)	Orc2 (ENSPEMG00000010035)	Nif3l1 (ENSPEMG00000023040)	Ppil3 (ENSPEMG00000011585)	Clk1 (ENSPEMG00000022508)	ENSPEMG00000013940	Aox2 (ENSPEMG00000022861) ##12	ENSPEMG00000027085 #12	Aox1 (ENSPEMG00000000656) #13	ENSPEMG00000020091 #14	Kctd18 (ENSPEMG00000028635) #15	Spats2l (ENSPEMG00000020003) #16	Maip1 (ENSPEMG00000015287) #17	Tyw5 (ENSPEMG00000009506) #18	1700066M21Rik (ENSPEMG00000001657) #19	Satb2 (ENSPEMG00000013811) #22	Hsfy2 (ENSPEMG00000029057)	Plcl1 (ENSPEMG00000001849) #23	ENSPEMG00000024520	Boll (ENSPEMG00000018168) #24	Mars2 (ENSPEMG00000008377) #25	Rftn2 (ENSPEMG00000000048) #26	Mob4 (ENSPEMG00000017361)	ENSPEMG00000029712	ENSPEMG00000010504 ##27	Hspd1 (ENSPEMG00000015411) ##28	Coq10b (ENSPEMG00000005817) #29	Sf3b1 (ENSPEMG00000010699) #30	Ankrd44 (ENSPEMG00000016873)	Pgap1 (ENSPEMG00000008939)	ENSPEMG00000024521
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Rabbit	MODERN SPECIES	18	PPIL3 (ENSOCUG00000010661)	CLK1 (ENSOCUG00000010653)	ENSOCUG00000010647	ENSOCUG00000026480 ##12	ENSOCUG00000024593 #12	ENSOCUG00000035654 #12	AOX1 (ENSOCUG00000013971) #13	ENSOCUG00000000547 #14	ENSOCUG00000037416 #14	KCTD18 (ENSOCUG00000011556) #15	SPATS2L (ENSOCUG00000011549) #16	ENSOCUG00000017946 #17	ENSOCUG00000035705 #18	ENSOCUG00000016464 #18	C2orf69 (ENSOCUG00000016473) #19	SATB2 (ENSOCUG00000009700) #22	PLCL1 (ENSOCUG00000013978) #23	BOLL (ENSOCUG00000013979) #24	MARS2 (ENSOCUG00000017798) #25	RFTN2 (ENSOCUG00000003993) #26	ENSOCUG00000005712	HSPE1 (ENSOCUG00000010360) ##27	HSPD1 (ENSOCUG00000012736) ##28	COQ10B (ENSOCUG00000012735) #29	ENSOCUG00000000205 ##21	ENSOCUG00000029492 #30	ENSOCUG00000012722 #30	ANKRD44 (ENSOCUG00000009183)	PGAP1 (ENSOCUG00000002192)	C2orf66 (ENSOCUG00000028999)	GTF3C3 (ENSOCUG00000000463)
Pika	MODERN SPECIES	573													MAIP1 (ENSOPRG00000004142) #17	TYW5 (ENSOPRG00000004133) #18	C2orf69 (ENSOPRG00000004115) #19	SATB2 (ENSOPRG00000003979) #22
Tree shrew	MODERN SPECIES	795																SATB2 (ENSTBEG00000002443) #22
Primates	ANCESTRAL SPECIES	13	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.b ##27	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.a.c.a.mb ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb.a.a ##27	ENSGT00390000005727.a.b.a.b.c.b.a ##28	ENSGT00390000006350.m.a.c.a.mb.b ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb.a.a ##27	ENSGT00390000005727.a.b.a.b.c.b.a ##28	ENSGT00390000006350.m.a.c.a.mb.b ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb.a.a ##27	ENSGT00390000006350.m.a.c.a.mb.b ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Gorilla	MODERN SPECIES	15	HYCC2 (ENSGGOG00000039554)	ORC2 (ENSGGOG00000014070)	NIF3L1 (ENSGGOG00000014060)	PPIL3 (ENSGGOG00000022268)	CLK1 (ENSGGOG00000016192)	BZW1 (ENSGGOG00000016296)	AOX1 (ENSGGOG00000006140) #13	SGO2 (ENSGGOG00000038921) #14	KCTD18 (ENSGGOG00000014079) #15	SPATS2L (ENSGGOG00000005917) #16	MAIP1 (ENSGGOG00000005661) #17	TYW5 (ENSGGOG00000041719) #18	C2orf69 (ENSGGOG00000005649) #19	FTCDNL1 (ENSGGOG00000040488) #20	ENSGGOG00000044011	SATB2 (ENSGGOG00000014123) #22	PLCL1 (ENSGGOG00000001959) #23	BOLL (ENSGGOG00000013594) #24	MARS2 (ENSGGOG00000034895) #25	RFTN2 (ENSGGOG00000009318) #26	MOB4 (ENSGGOG00000036779)	HSPE1 (ENSGGOG00000027944) ##27	HSPD1 (ENSGGOG00000008267) ##28	COQ10B (ENSGGOG00000039158) #29	SF3B1 (ENSGGOG00000009264) #30	ENSGGOG00000038007	ANKRD44 (ENSGGOG00000014558)	PGAP1 (ENSGGOG00000001785)	C2orf66 (ENSGGOG00000038009)	GTF3C3 (ENSGGOG00000011787)	CCDC150 (ENSGGOG00000010004)
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb.a.a ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Human	MODERN SPECIES	11	NDUFB3 (ENSG00000119013)	HYCC2 (ENSG00000155744)	ORC2 (ENSG00000115942)	NIF3L1 (ENSG00000196290)	PPIL3 (ENSG00000240344)	CLK1 (ENSG00000013441)	BZW1 (ENSG00000082153)	AOX1 (ENSG00000138356) #13	SGO2 (ENSG00000163535) #14	KCTD18 (ENSG00000155729) #15	SPATS2L (ENSG00000196141) #16	MAIP1 (ENSG00000162972) #17	TYW5 (ENSG00000162971) #18	C2orf69 (ENSG00000178074) #19	FTCDNL1 (ENSG00000226124) #20	SATB2 (ENSG00000119042) #22	PLCL1 (ENSG00000115896) #23	BOLL (ENSG00000152430) #24	MARS2 (ENSG00000247626) #25	RFTN2 (ENSG00000162944) #26	MOB4 (ENSG00000115540)	HSPE1-MOB4 (ENSG00000270757)	HSPE1 (ENSG00000115541) ##27	HSPD1 (ENSG00000144381) ##28	COQ10B (ENSG00000115520) #29	SF3B1 (ENSG00000115524) #30	ANKRD44 (ENSG00000065413)	PGAP1 (ENSG00000197121)	C2orf66 (ENSG00000187944)	GTF3C3 (ENSG00000119041)	CCDC150 (ENSG00000144395)
Pan	ANCESTRAL SPECIES	12	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb.a.a ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Chimpanzee	MODERN SPECIES	15	ORC2 (ENSPTRG00000012795)	NIF3L1 (ENSPTRG00000012794)	PPIL3 (ENSPTRG00000012793)	CLK1 (ENSPTRG00000012792)	BZW1 (ENSPTRG00000012791)	ENSPTRG00000044647 ##12	AOX1 (ENSPTRG00000012790) #13	SGO2 (ENSPTRG00000022953) #14	KCTD18 (ENSPTRG00000012787) #15	SPATS2L (ENSPTRG00000012785) #16	MAIP1 (ENSPTRG00000012784) #17	TYW5 (ENSPTRG00000012783) #18	C2orf69 (ENSPTRG00000012782) #19	FTCDNL1 (ENSPTRG00000047502) #20	ENSPTRG00000050460	SATB2 (ENSPTRG00000012779) #22	PLCL1 (ENSPTRG00000012778) #23	BOLL (ENSPTRG00000012777) #24	MARS2 (ENSPTRG00000047853) #25	RFTN2 (ENSPTRG00000012776) #26	MOB4 (ENSPTRG00000012775)	HSPE1 (ENSPTRG00000012774) ##27	HSPD1 (ENSPTRG00000044665) ##28	COQ10B (ENSPTRG00000012772) #29	SF3B1 (ENSPTRG00000012771) #30	ENSPTRG00000049270	ANKRD44 (ENSPTRG00000012770)	PGAP1 (ENSPTRG00000012769)	C2BH2orf66 (ENSPTRG00000012768)	GTF3C3 (ENSPTRG00000012767)	CCDC150 (ENSPTRG00000012765)
Bonobo	MODERN SPECIES	15	ORC2 (ENSPPAG00000030211)	NIF3L1 (ENSPPAG00000043491)	PPIL3 (ENSPPAG00000039183)	CLK1 (ENSPPAG00000036957)	BZW1 (ENSPPAG00000027971)	ENSPPAG00000030893 ##12	AOX1 (ENSPPAG00000000241) #13	SGO2 (ENSPPAG00000000061) #14	KCTD18 (ENSPPAG00000038865) #15	SPATS2L (ENSPPAG00000036160) #16	MAIP1 (ENSPPAG00000026692) #17	TYW5 (ENSPPAG00000027150) #18	C2orf69 (ENSPPAG00000035529) #19	FTCDNL1 (ENSPPAG00000020283) #20	ENSPPAG00000039843	SATB2 (ENSPPAG00000044026) #22	PLCL1 (ENSPPAG00000042453) #23	BOLL (ENSPPAG00000033757) #24	MARS2 (ENSPPAG00000007220) #25	RFTN2 (ENSPPAG00000026815) #26	MOB4 (ENSPPAG00000044023)	ENSPPAG00000023895 ##27	HSPD1 (ENSPPAG00000038858) ##28	COQ10B (ENSPPAG00000010452) #29	SF3B1 (ENSPPAG00000035007) #30	ENSPPAG00000043776	ENSPPAG00000042224	ANKRD44 (ENSPPAG00000033556)	PGAP1 (ENSPPAG00000039254)	C2orf66 (ENSPPAG00000029492)	GTF3C3 (ENSPPAG00000002745)
Orangutan	MODERN SPECIES	15	NDUFB3 (ENSPPYG00000013065)	HYCC2 (ENSPPYG00000029836)	ORC2 (ENSPPYG00000013064)	NIF3L1 (ENSPPYG00000013063)	ENSPPYG00000013062	CLK1 (ENSPPYG00000013061)	BZW1 (ENSPPYG00000035986)	AOX1 (ENSPPYG00000013058) #13	SGO2 (ENSPPYG00000013057) #14	KCTD18 (ENSPPYG00000030650) #15	SPATS2L (ENSPPYG00000013055) #16	MAIP1 (ENSPPYG00000035692) #17	TYW5 (ENSPPYG00000033416) #18	C2orf69 (ENSPPYG00000013054) #19	FTCDNL1 (ENSPPYG00000033061) #20	SATB2 (ENSPPYG00000013052) #22	PLCL1 (ENSPPYG00000039108) #23	BOLL (ENSPPYG00000037688) #24	MARS2 (ENSPPYG00000013049) #25	ENSPPYG00000041557	RFTN2 (ENSPPYG00000013048) #26	MOB4 (ENSPPYG00000013047)	HSPE1 (ENSPPYG00000025876) ##27	HSPD1 (ENSPPYG00000013046) ##28	COQ10B (ENSPPYG00000039065) #29	SF3B1 (ENSPPYG00000013044) #30	ANKRD44 (ENSPPYG00000013043)	PGAP1 (ENSPPYG00000013042)	C2orf66 (ENSPPYG00000037735)	GTF3C3 (ENSPPYG00000013040)	CCDC150 (ENSPPYG00000013039)
Gibbon	MODERN SPECIES	14	HYCC2 (ENSNLEG00000006941)	ORC2 (ENSNLEG00000006938)	NIF3L1 (ENSNLEG00000006935)	PPIL3 (ENSNLEG00000034236)	CLK1 (ENSNLEG00000032526)	BZW1 (ENSNLEG00000006929)	ENSNLEG00000029066 ##12	AOX1 (ENSNLEG00000006920) #13	SGO2 (ENSNLEG00000006913) #14	KCTD18 (ENSNLEG00000006912) #15	SPATS2L (ENSNLEG00000006905) #16	MAIP1 (ENSNLEG00000029234) #17	TYW5 (ENSNLEG00000031551) #18	C2orf69 (ENSNLEG00000031645) #19	FTCDNL1 (ENSNLEG00000029410) #20	SATB2 (ENSNLEG00000006893) #22	PLCL1 (ENSNLEG00000006890) #23	BOLL (ENSNLEG00000006885) #24	MARS2 (ENSNLEG00000018752) #25	RFTN2 (ENSNLEG00000006883) #26	MOB4 (ENSNLEG00000006881)	ENSNLEG00000030370 #27	ENSNLEG00000006874 ##28	ENSNLEG00000029205	COQ10B (ENSNLEG00000006871) #29	SF3B1 (ENSNLEG00000006861) #30	ANKRD44 (ENSNLEG00000006855)	PGAP1 (ENSNLEG00000006849)	C2orf66 (ENSNLEG00000006848)	GTF3C3 (ENSNLEG00000006837)	ENSNLEG00000006833
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00950000183743	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b #27	ENSGT00390000006350.m.a.c.a.mb ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00950000183743	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b.a #27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468
Vervet Monkey	MODERN SPECIES	1	HYCC2 (ENSCSAG00000010815)	ORC2 (ENSCSAG00000010834)	NIF3L1 (ENSCSAG00000010842)	PPIL3 (ENSCSAG00000010852)	CLK1 (ENSCSAG00000010924)	BZW1 (ENSCSAG00000010957)	ENSCSAG00000011187 ##12	AOX1 (ENSCSAG00000011276) #13	SGO2 (ENSCSAG00000011303) #14	KCTD18 (ENSCSAG00000011318) #15	SPATS2L (ENSCSAG00000011326) #16	MAIP1 (ENSCSAG00000011334) #17	TYW5 (ENSCSAG00000011351) #18	C2orf69 (ENSCSAG00000011358) #19	FTCDNL1 (ENSCSAG00000011372) #20	SATB2 (ENSCSAG00000011380) #22	PLCL1 (ENSCSAG00000011391) #23	BOLL (ENSCSAG00000011399) #24	MARS2 (ENSCSAG00000018765) #25	RFTN2 (ENSCSAG00000011411) #26	MOB4 (ENSCSAG00000011421)	ENSCSAG00000011427 #27	HSPD1 (ENSCSAG00000011463) ##28	COQ10B (ENSCSAG00000011483) #29	SF3B1 (ENSCSAG00000011505) #30	ENSCSAG00000011517	ANKRD44 (ENSCSAG00000011536)	PGAP1 (ENSCSAG00000011561)	C2orf66 (ENSCSAG00000011573)	GTF3C3 (ENSCSAG00000011582)	CCDC150 (ENSCSAG00000011637)
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00950000183743	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b.a #27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b.a #27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484
Pig-tailed macaque	MODERN SPECIES	409	NIF3L1 (ENSMNEG00000040987)	PPIL3 (ENSMNEG00000032202)	CLK1 (ENSMNEG00000031266)	BZW1 (ENSMNEG00000043638)	ENSMNEG00000045434 ##12	ENSMNEG00000034841 #12	AOX1 (ENSMNEG00000024714) #13	SGO2 (ENSMNEG00000035682) #14	KCTD18 (ENSMNEG00000038609) #15	SPATS2L (ENSMNEG00000016309) #16	MAIP1 (ENSMNEG00000028494) #17	TYW5 (ENSMNEG00000030303) #18	C2orf69 (ENSMNEG00000035266) #19	FTCDNL1 (ENSMNEG00000037918) #20	ENSMNEG00000040066	SATB2 (ENSMNEG00000043012) #22	PLCL1 (ENSMNEG00000019208) #23	BOLL (ENSMNEG00000033015) #24	MARS2 (ENSMNEG00000019593) #25	RFTN2 (ENSMNEG00000033769) #26	ENSMNEG00000033689	MOB4 (ENSMNEG00000033188)	ENSMNEG00000039279 ##27	ENSMNEG00000043358	COQ10B (ENSMNEG00000032409) #29	SF3B1 (ENSMNEG00000042333) #30	ENSMNEG00000036998	ANKRD44 (ENSMNEG00000043273)	ENSMNEG00000045145	PGAP1 (ENSMNEG00000033082)	C2orf66 (ENSMNEG00000038376)
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.d	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b.a #27	ENSGT00390000005727.a.b.a.b.c.a.a.e ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468
Crab-eating macaque	MODERN SPECIES	3	HYCC2 (ENSMFAG00000032144)	ORC2 (ENSMFAG00000040620)	NIF3L1 (ENSMFAG00000003012)	PPIL3 (ENSMFAG00000038708)	CLK1 (ENSMFAG00000030719)	BZW1 (ENSMFAG00000020809)	ENSMFAG00000034555 ##12	AOX1 (ENSMFAG00000036889) #13	SGO2 (ENSMFAG00000041855) #14	KCTD18 (ENSMFAG00000037300) #15	SPATS2L (ENSMFAG00000003450) #16	MAIP1 (ENSMFAG00000045074) #17	TYW5 (ENSMFAG00000004016) #18	C2orf69 (ENSMFAG00000032268) #19	ENSMFAG00000038094 #20	SATB2 (ENSMFAG00000035983) #22	PLCL1 (ENSMFAG00000038838) #23	BOLL (ENSMFAG00000030962) #24	MARS2 (ENSMFAG00000012275) #25	ENSMFAG00000003051	RFTN2 (ENSMFAG00000003082) #26	ENSMFAG00000035530	ENSMFAG00000045023 #27	ENSMFAG00000033000 ##28	COQ10B (ENSMFAG00000017910) #29	ENSMFAG00000045829	SF3B1 (ENSMFAG00000036680) #30	ENSMFAG00000057968	ENSMFAG00000057322	ANKRD44 (ENSMFAG00000032694)	PGAP1 (ENSMFAG00000029122)
Rhesus	MODERN SPECIES	3	ORC2 (ENSMMUG00000014460)	NIF3L1 (ENSMMUG00000006639)	PPIL3 (ENSMMUG00000006638)	CLK1 (ENSMMUG00000006640)	BZW1 (ENSMMUG00000022202)	AOX2 (ENSMMUG00000005835) ##12	AOX4 (ENSMMUG00000047974) #12	AOX1 (ENSMMUG00000021931) #13	SGO2 (ENSMMUG00000052913) #14	KCTD18 (ENSMMUG00000008102) #15	SPATS2L (ENSMMUG00000008101) #16	MAIP1 (ENSMMUG00000023168) #17	TYW5 (ENSMMUG00000023167) #18	C12H2orf69 (ENSMMUG00000041535) #19	FTCDNL1 (ENSMMUG00000031310) #20	SATB2 (ENSMMUG00000046254) #22	ENSMMUG00000059853	PLCL1 (ENSMMUG00000012822) #23	BOLL (ENSMMUG00000023811) #24	MARS2 (ENSMMUG00000023810) #25	RFTN2 (ENSMMUG00000023809) #26	HSPE1 (ENSMMUG00000016547)	HSPD1 (ENSMMUG00000010489) ##28	COQ10B (ENSMMUG00000056418) #29	ENSMMUG00000058328	SF3B1 (ENSMMUG00000022430) #30	ANKRD44 (ENSMMUG00000022425)	PGAP1 (ENSMMUG00000043369)	C2H2orf66 (ENSMMUG00000054516)	GTF3C3 (ENSMMUG00000008643)	CCDC150 (ENSMMUG00000015970)
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00950000183743	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b.a #27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484
Olive baboon	MODERN SPECIES	1	ORC2 (ENSPANG00000034347)	NIF3L1 (ENSPANG00000025493)	ENSPANG00000009683	CLK1 (ENSPANG00000015580)	BZW1 (ENSPANG00000016459)	AOX2 (ENSPANG00000016460) ##12	AOX4 (ENSPANG00000024540) #12	AOX1 (ENSPANG00000015933) #13	SGO2 (ENSPANG00000021922) #14	KCTD18 (ENSPANG00000021439) #15	SPATS2L (ENSPANG00000008482) #16	TYW5 (ENSPANG00000009235) #18	C2orf69 (ENSPANG00000040521) #19	ENSPANG00000044612 #20	ENSPANG00000031615 #20	SATB2 (ENSPANG00000011212) #22	ENSPANG00000050725	PLCL1 (ENSPANG00000000848) #23	BOLL (ENSPANG00000009570) #24	ENSPANG00000042310	MARS2 (ENSPANG00000016544) #25	RFTN2 (ENSPANG00000009899) #26	MOB4 (ENSPANG00000016215)	ENSPANG00000046137 #27	ENSPANG00000029555 ##28	COQ10B (ENSPANG00000006879) #29	ENSPANG00000037062	SF3B1 (ENSPANG00000013417) #30	ENSPANG00000016748	ENSPANG00000037191	ENSPANG00000048684
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00950000183743	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.b.a.b.a #27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484
Drill	MODERN SPECIES	457	PPIL3 (ENSMLEG00000039054)	CLK1 (ENSMLEG00000029735)	BZW1 (ENSMLEG00000018894)	ENSMLEG00000016360 ##12	ENSMLEG00000013006 #12	AOX1 (ENSMLEG00000039204) #13	SGO2 (ENSMLEG00000039520) #14	KCTD18 (ENSMLEG00000042319) #15	SPATS2L (ENSMLEG00000037145) #16	ENSMLEG00000036074	MAIP1 (ENSMLEG00000041626) #17	TYW5 (ENSMLEG00000038351) #18	C2orf69 (ENSMLEG00000015699) #19	FTCDNL1 (ENSMLEG00000042066) #20	ENSMLEG00000042892	SATB2 (ENSMLEG00000037435) #22	PLCL1 (ENSMLEG00000042517) #23
Sooty mangabey	MODERN SPECIES	570	NIF3L1 (ENSCATG00000030966)	PPIL3 (ENSCATG00000031187)	CLK1 (ENSCATG00000030802)	BZW1 (ENSCATG00000032512)	ENSCATG00000019918 ##12	ENSCATG00000042053 #12	AOX1 (ENSCATG00000033826) #13	SGO2 (ENSCATG00000027226) #14	KCTD18 (ENSCATG00000044706) #15	SPATS2L (ENSCATG00000008807) #16	MAIP1 (ENSCATG00000036858) #17	TYW5 (ENSCATG00000033078) #18	C2orf69 (ENSCATG00000031233) #19	FTCDNL1 (ENSCATG00000018934) #20	ENSCATG00000044312	SATB2 (ENSCATG00000017161) #22	PLCL1 (ENSCATG00000014153) #23	BOLL (ENSCATG00000004430) #24	MARS2 (ENSCATG00000001827) #25	GLUD2 (ENSCATG00000044639)	RFTN2 (ENSCATG00000031580) #26	MOB4 (ENSCATG00000002964)	ENSCATG00000022859 ##27	HSPD1 (ENSCATG00000044175) ##28	COQ10B (ENSCATG00000031857) #29	ENSCATG00000031238	SF3B1 (ENSCATG00000035735) #30	ENSCATG00000040754	ENSCATG00000039142	ANKRD44 (ENSCATG00000034086)	PGAP1 (ENSCATG00000041899)
Rhinopithecus	ANCESTRAL SPECIES	83	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00950000183743	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a.a	ENSGT00390000006350.m.a.c.a.mb ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367.w #29	ENSGT00390000018393 #30	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468
Black snub-nosed monkey	MODERN SPECIES	1955												MAIP1 (ENSRBIG00000010133) #17	TYW5 (ENSRBIG00000039190) #18	C2orf69 (ENSRBIG00000038270) #19	ENSRBIG00000040998 #20	SATB2 (ENSRBIG00000026956) #22	PLCL1 (ENSRBIG00000030591) #23
Golden snub-nosed monkey	MODERN SPECIES	676	ENSRROG00000029517	CLK1 (ENSRROG00000035273)	BZW1 (ENSRROG00000044305)	ENSRROG00000043595 ##12	ENSRROG00000034026 #12	AOX1 (ENSRROG00000043118) #13	SGO2 (ENSRROG00000037302) #14	KCTD18 (ENSRROG00000043788) #15	SPATS2L (ENSRROG00000041208) #16	ENSRROG00000043858	ENSRROG00000040812 #17	TYW5 (ENSRROG00000033012) #18	C2orf69 (ENSRROG00000028208) #19	FTCDNL1 (ENSRROG00000042811) #20	ENSRROG00000032256	SATB2 (ENSRROG00000044735) #22
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234.c #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.b.b ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234.c #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.a.c.b.a.a ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234.c #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00390000006350.m.a.c.b.a.a ##27	ENSGT00390000005727.a.b.a.b.c.a.a ##28	ENSGT00940000155367 #29	ENSGT00950000183198.c.a.a.b	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Bolivian squirrel monkey	MODERN SPECIES	56	HYCC2 (ENSSBOG00000033197)	ENSSBOG00000025751	NIF3L1 (ENSSBOG00000034561)	ENSSBOG00000028593	CLK1 (ENSSBOG00000031614)	BZW1 (ENSSBOG00000020710)	ENSSBOG00000034034 ##12	AOX1 (ENSSBOG00000032424) #13	SGO2 (ENSSBOG00000035222) #14	KCTD18 (ENSSBOG00000031520) #15	SPATS2L (ENSSBOG00000031853) #16	MAIP1 (ENSSBOG00000033061) #17	TYW5 (ENSSBOG00000020625) #18	C2orf69 (ENSSBOG00000031239) #19	FTCDNL1 (ENSSBOG00000021980) #20	SATB2 (ENSSBOG00000028702) #22	ENSSBOG00000007950	PLCL1 (ENSSBOG00000033477) #23	BOLL (ENSSBOG00000027161) #24	MARS2 (ENSSBOG00000016226) #25	RFTN2 (ENSSBOG00000031373) #26	MOB4 (ENSSBOG00000023092)	ENSSBOG00000024433	ENSSBOG00000027158 ##27	HSPD1 (ENSSBOG00000034003) ##28	COQ10B (ENSSBOG00000021591) #29	ENSSBOG00000024424	SF3B1 (ENSSBOG00000020080) #30	ANKRD44 (ENSSBOG00000020670)	PGAP1 (ENSSBOG00000019868)	C2orf66 (ENSSBOG00000021609)
Capuchin	MODERN SPECIES	178	FAM126B (ENSCCAG00000029565)	ORC2 (ENSCCAG00000000270)	NIF3L1 (ENSCCAG00000020100)	PPIL3 (ENSCCAG00000019393)	CLK1 (ENSCCAG00000021387)	BZW1 (ENSCCAG00000012616)	ENSCCAG00000028426 ##12	AOX1 (ENSCCAG00000025414) #13	SGO2 (ENSCCAG00000032369) #14	KCTD18 (ENSCCAG00000023011) #15	SPATS2L (ENSCCAG00000033886) #16	MAIP1 (ENSCCAG00000012313) #17	TYW5 (ENSCCAG00000030363) #18	C2orf69 (ENSCCAG00000025235) #19	ENSCCAG00000027889 #20	SATB2 (ENSCCAG00000028159) #22	PLCL1 (ENSCCAG00000008545) #23	BOLL (ENSCCAG00000026623) #24	MARS2 (ENSCCAG00000019937) #25	ENSCCAG00000037834	RFTN2 (ENSCCAG00000034642) #26	MOB4 (ENSCCAG00000026299)	ENSCCAG00000018271 ##27	ENSCCAG00000028857 ##28
Marmoset	MODERN SPECIES	18	CLK1 (ENSCJAG00000004319)	BZW1 (ENSCJAG00000004267)	ENSCJAG00000033419 ##12	AOX1 (ENSCJAG00000004230) #13	SGO2 (ENSCJAG00000004216) #14	KCTD18 (ENSCJAG00000031173) #15	ENSCJAG00000085721	SPATS2L (ENSCJAG00000004173) #16	ENSCJAG00000083755	MAIP1 (ENSCJAG00000037075) #17	TYW5 (ENSCJAG00000004155) #18	C2orf69 (ENSCJAG00000004149) #19	ENSCJAG00000044172 #20	ENSCJAG00000078875	ENSCJAG00000082819	SATB2 (ENSCJAG00000004111) #22	ENSCJAG00000055486	ENSCJAG00000085382	PLCL1 (ENSCJAG00000004100) #23	ENSCJAG00000070051	BOLL (ENSCJAG00000004092) #24	MARS2 (ENSCJAG00000022885) #25	ENSCJAG00000077720	RFTN2 (ENSCJAG00000058836) #26	MOB4 (ENSCJAG00000045626)	ENSCJAG00000084245	ENSCJAG00000041512 ##27	HSPD1 (ENSCJAG00000003990) ##28	COQ10B (ENSCJAG00000039085) #29	SF3B1 (ENSCJAG00000003902) #30	ANKRD44 (ENSCJAG00000003803)
Mas night monkey	MODERN SPECIES	492					CLK1 (ENSANAG00000027111)	BZW1 (ENSANAG00000021489)	ENSANAG00000023906 ##12	AOX1 (ENSANAG00000025069) #13	SGO2 (ENSANAG00000030373) #14	KCTD18 (ENSANAG00000023292) #15	SPATS2L (ENSANAG00000029380) #16	MAIP1 (ENSANAG00000031625) #17	TYW5 (ENSANAG00000024108) #18	C2orf69 (ENSANAG00000022030) #19	ENSANAG00000023820 #20	SATB2 (ENSANAG00000024206) #22	PLCL1 (ENSANAG00000022909) #23	BOLL (ENSANAG00000031449) #24	ENSANAG00000027174
Tarsier	MODERN SPECIES	4981																SATB2 (ENSTSYG00000002539) #22	LYG2 (ENSTSYG00000028650)	ENSTSYG00000029768	TXNDC9 (ENSTSYG00000033216)	EIF5B (ENSTSYG00000011850)	REV1 (ENSTSYG00000011917)	AFF3 (ENSTSYG00000029683)
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Bushbaby	MODERN SPECIES	128	HYCC2 (ENSOGAG00000012336)	ORC2 (ENSOGAG00000012329)	NIF3L1 (ENSOGAG00000025311)	PPIL3 (ENSOGAG00000007087)	CLK1 (ENSOGAG00000012328)	BZW1 (ENSOGAG00000012326)	AOX2 (ENSOGAG00000025249) ##12	AOX4 (ENSOGAG00000030158) #12	AOX1 (ENSOGAG00000006066) #13	SGO2 (ENSOGAG00000006064) #14	KCTD18 (ENSOGAG00000012335) #15	SPATS2L (ENSOGAG00000012331) #16	MAIP1 (ENSOGAG00000006965) #17	C2orf69 (ENSOGAG00000028317) #19	ENSOGAG00000027028 #20	SATB2 (ENSOGAG00000006949) #22
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.b	ENSGT00390000006350.m.a.c.b.a.b #27	ENSGT01050000244956.b.c.a	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468
Mouse lemur	MODERN SPECIES	30	ENSMICG00000003372	PPIL3 (ENSMICG00000003367)	CLK1 (ENSMICG00000003361)	BZW1 (ENSMICG00000003355)	ENSMICG00000033651 ##12	ENSMICG00000027664 #12	AOX1 (ENSMICG00000005718) #13	SGO2 (ENSMICG00000033463) #14	ENSMICG00000003963 #15	SPATS2L (ENSMICG00000003956) #16	MAIP1 (ENSMICG00000044985) #17	TYW5 (ENSMICG00000046098) #18	C2orf69 (ENSMICG00000035511) #19	ENSMICG00000026608 #20	ENSMICG00000037134	SATB2 (ENSMICG00000009378) #22	PLCL1 (ENSMICG00000011854) #23	BOLL (ENSMICG00000011845) #24	RFTN2 (ENSMICG00000028117) #26	ENSMICG00000037985	HSPD1 (ENSMICG00000028600) ##28	HSPE1 (ENSMICG00000046768) ##27	COQ10B (ENSMICG00000013910) #29	SF3B1 (ENSMICG00000013879) #30	ANKRD44 (ENSMICG00000013853)	PGAP1 (ENSMICG00000013824)	C2orf66 (ENSMICG00000043136)	GTF3C3 (ENSMICG00000013800)	CCDC150 (ENSMICG00000013761)	HECW2 (ENSMICG00000013727)	STK17B (ENSMICG00000013716)
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.c.a	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.a.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Coquerels sifaka	MODERN SPECIES	94	NDUFB3 (ENSPCOG00000020529)	HYCC2 (ENSPCOG00000014611)	ORC2 (ENSPCOG00000021783)	NIF3L1 (ENSPCOG00000018022)	PPIL3 (ENSPCOG00000028235)	CLK1 (ENSPCOG00000018180)	ENSPCOG00000015831	ENSPCOG00000015215 ##12	ENSPCOG00000027597 #12	AOX1 (ENSPCOG00000021840) #13	ENSPCOG00000024135 #14	SPATS2L (ENSPCOG00000015945) #16	MAIP1 (ENSPCOG00000008943) #17	C2orf69 (ENSPCOG00000006950) #19	FTCDNL1 (ENSPCOG00000019867) #20	ENSPCOG00000014379 #22
Greater bamboo lemur	MODERN SPECIES	225		MAK (ENSPSMG00000025468)	TMEM14C (ENSPSMG00000025455)	C6orf52 (ENSPSMG00000025442)	ENSPSMG00000025433	GCNT2 (ENSPSMG00000025432)	HNRNPA1L3 (ENSPSMG00000025423)	AOX1 (ENSPSMG00000025393) #13	SGO2 (ENSPSMG00000025322) #14	KCTD18 (ENSPSMG00000025316) #15	SPATS2L (ENSPSMG00000025292) #16	MAIP1 (ENSPSMG00000025245) #17	TYW5 (ENSPSMG00000025236) #18	C2orf69 (ENSPSMG00000025231) #19	FTCDNL1 (ENSPSMG00000025226) #20	SATB2 (ENSPSMG00000025213) #22	PLCL1 (ENSPSMG00000025179) #23	BOLL (ENSPSMG00000025166) #24	MARS2 (ENSPSMG00000025148) #25	RFTN2 (ENSPSMG00000025142) #26	ENSPSMG00000025134	ENSPSMG00000025114 #27	ENSPSMG00000025102 ##28	COQ10B (ENSPSMG00000025082) #29	SF3B1 (ENSPSMG00000025061) #30	ANKRD44 (ENSPSMG00000025023)	PGAP1 (ENSPSMG00000024985)	GTF3C3 (ENSPSMG00000024937)	CCDC150 (ENSPSMG00000024921)	HECW2 (ENSPSMG00000024894)	STK17B (ENSPSMG00000024880)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000008096.B #22
Common shrew	MODERN SPECIES	1424																SATB2 (ENSSARG00000014343) #22
Hedgehog	MODERN SPECIES	2008																SATB2 (ENSEEUG00000014569) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Suina	ANCESTRAL SPECIES	3	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.b.a.b #27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Pig	MODERN SPECIES	6	ORC2 (ENSSSCG00000016098)	NIF3L1 (ENSSSCG00000039654)	PPIL3 (ENSSSCG00000016096)	CLK1 (ENSSSCG00000016095)	BZW1 (ENSSSCG00000016094)	ENSSSCG00000016093 ##12	ENSSSCG00000040051 #12	AOX1 (ENSSSCG00000029606) #13	SGO2 (ENSSSCG00000016092) #14	ENSSSCG00000016091 #15	SPATS2L (ENSSSCG00000016090) #16	MAIP1 (ENSSSCG00000036676) #17	TYW5 (ENSSSCG00000016087) #18	C2orf69 (ENSSSCG00000016086) #19	ENSSSCG00000016085 #20	SATB2 (ENSSSCG00000021657) #22	ENSSSCG00000041534	PLCL1 (ENSSSCG00000016083) #23	ENSSSCG00000061867	BOLL (ENSSSCG00000016082) #24	MARS2 (ENSSSCG00000034494) #25	RFTN2 (ENSSSCG00000037483) #26	MOBKL3 (ENSSSCG00000016079)	HSPE1 (ENSSSCG00000016078) #27	HSPD1 (ENSSSCG00000016077) ##28	COQ10B (ENSSSCG00000016076) #29	ENSSSCG00000063544 #30	ENSSSCG00000016075 #30	ENSSSCG00000051570	ANKRD44 (ENSSSCG00000016074)	PGAP1 (ENSSSCG00000016073)
Chacoan peccary	MODERN SPECIES	91	ORC2 (ENSCWAG00000010595)	NIF3L1 (ENSCWAG00000010511)	PPIL3 (ENSCWAG00000010443)	CLK1 (ENSCWAG00000010341)	BZW1 (ENSCWAG00000009955)	ENSCWAG00000009721 ##12	ENSCWAG00000009483 #12	AOX1 (ENSCWAG00000009210) #13	SGO2 (ENSCWAG00000009111) #14	KCTD18 (ENSCWAG00000009030) #15	SPATS2L (ENSCWAG00000008608) #16	MAIP1 (ENSCWAG00000008554) #17	TYW5 (ENSCWAG00000008494) #18	C2orf69 (ENSCWAG00000008457) #19	FTCDNL1 (ENSCWAG00000008365) #20	SATB2 (ENSCWAG00000008150) #22	PLCL1 (ENSCWAG00000007994) #23	ENSCWAG00000007948 #24
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.i.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00390000012561.b.i.a	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.i.b	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.i.b	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.i.b	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000154631.c.b	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.i.b	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000154631.c.b	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Beluga whale	MODERN SPECIES	84	ENSDLEG00000017782	FAM126B (ENSDLEG00000017730)	ORC2 (ENSDLEG00000017685)	NIF3L1 (ENSDLEG00000017669)	PPIL3 (ENSDLEG00000017637)	CLK1 (ENSDLEG00000017601)	ENSDLEG00000017537	AOX1 (ENSDLEG00000017388) #13	SGO2 (ENSDLEG00000017351) #14	KCTD18 (ENSDLEG00000017330) #15	SPATS2L (ENSDLEG00000017277) #16	MAIP1 (ENSDLEG00000017256) #17	TYW5 (ENSDLEG00000017244) #18	CUNH2orf69 (ENSDLEG00000017234) #19	ENSDLEG00000017202 #20	SATB2 (ENSDLEG00000017180) #22	ENSDLEG00000017147	PLCL1 (ENSDLEG00000017124) #23	ENSDLEG00000017113	ENSDLEG00000017109	BOLL (ENSDLEG00000017047) #24	MARS2 (ENSDLEG00000017031) #25	RFTN2 (ENSDLEG00000017004) #26	HSPE1 (ENSDLEG00000016991)	ENSDLEG00000016973 ##27	HSPD1 (ENSDLEG00000016961) ##28	COQ10B (ENSDLEG00000016950) #29	SF3B1 (ENSDLEG00000016863) #30	ANKRD44 (ENSDLEG00000016735)	PGAP1 (ENSDLEG00000016703)	GTF3C3 (ENSDLEG00000016677)
Narwhal	MODERN SPECIES	302	ENSMMNG00015008710	ORC2 (ENSMMNG00015008727)	NIF3L1 (ENSMMNG00015008742)	PPIL3 (ENSMMNG00015008752)	CLK1 (ENSMMNG00015008783)	ENSMMNG00015008840	AOX1 (ENSMMNG00015008883) #13	ENSMMNG00015008917 #14	ENSMMNG00015008923 #14	KCTD18 (ENSMMNG00015008930) #15	SPATS2L (ENSMMNG00015008966) #16	MAIP1 (ENSMMNG00015009034) #17	TYW5 (ENSMMNG00015009041) #18	C2orf69 (ENSMMNG00015009051) #19	FTCDNL1 (ENSMMNG00015009064) #20	SATB2 (ENSMMNG00015009088) #22	ENSMMNG00015009121	PLCL1 (ENSMMNG00015009132) #23	ENSMMNG00015009146	MARS2 (ENSMMNG00015009149) #25	RFTN2 (ENSMMNG00015009156) #26	ENSMMNG00015005118	MOB4 (ENSMMNG00015005131)	ENSMMNG00015005152 ##27	ENSMMNG00015005160 ##28	COQ10B (ENSMMNG00015005170) #29	SF3B1 (ENSMMNG00015005194) #30	ANKRD44 (ENSMMNG00015005236)	PGAP1 (ENSMMNG00015005302)	C2orf66 (ENSMMNG00015005331)	GTF3C3 (ENSMMNG00015005350)
Vaquita	MODERN SPECIES	18	ENSPSNG00000017913	ENSPSNG00000017952	ORC2 (ENSPSNG00000017971)	NIF3L1 (ENSPSNG00000018036)	PPIL3 (ENSPSNG00000018105)	CLK1 (ENSPSNG00000018159)	ENSPSNG00000018409	AOX1 (ENSPSNG00000018708) #13	SGO2 (ENSPSNG00000018985) #14	KCTD18 (ENSPSNG00000019019) #15	SPATS2L (ENSPSNG00000019081) #16	MAIP1 (ENSPSNG00000019254) #17	TYW5 (ENSPSNG00000019307) #18	C2orf69 (ENSPSNG00000019348) #19	ENSPSNG00000019397 #20	SATB2 (ENSPSNG00000019498) #22	ENSPSNG00000019635	PLCL1 (ENSPSNG00000019688) #23	ENSPSNG00000019773	BOLL (ENSPSNG00000019819) #24	MARS2 (ENSPSNG00000020001) #25	RFTN2 (ENSPSNG00000020023) #26	MOB4 (ENSPSNG00000020101)	HSPD1 (ENSPSNG00000020243) ##28	ENSPSNG00000020315 ##27	COQ10B (ENSPSNG00000020376) #29	SF3B1 (ENSPSNG00000020453) #30	ANKRD44 (ENSPSNG00000020570)	PGAP1 (ENSPSNG00000020691)	C2orf66 (ENSPSNG00000020837)	GTF3C3 (ENSPSNG00000002123)
Dolphin	MODERN SPECIES	16																SATB2 (ENSTTRG00000001254) #22
Sperm whale	MODERN SPECIES	11	ENSPCTG00005001851	FAM126B (ENSPCTG00005001830)	ORC2 (ENSPCTG00005001802)	NIF3L1 (ENSPCTG00005001774)	PPIL3 (ENSPCTG00005001749)	CLK1 (ENSPCTG00005001575)	BZW1 (ENSPCTG00005001498)	AOX1 (ENSPCTG00005001418) #13	SGO2 (ENSPCTG00005001385) #14	KCTD18 (ENSPCTG00005001363) #15	SPATS2L (ENSPCTG00005001213) #16	MAIP1 (ENSPCTG00005001167) #17	TYW5 (ENSPCTG00005001148) #18	C2H2orf69 (ENSPCTG00005001135) #19	ENSPCTG00005001114 #20	SATB2 (ENSPCTG00005001020) #22	PLCL1 (ENSPCTG00005000965) #23	BOLL (ENSPCTG00005000834) #24	MARS2 (ENSPCTG00005000802) #25	RFTN2 (ENSPCTG00005000782) #26	MOB4 (ENSPCTG00005000750)	HSPE1 (ENSPCTG00005000700) ##27	HSPD1 (ENSPCTG00005000653) ##28	COQ10B (ENSPCTG00005000606) #29	SF3B1 (ENSPCTG00005000567) #30	ANKRD44 (ENSPCTG00005000458)	PGAP1 (ENSPCTG00005000363)	C2orf66 (ENSPCTG00005000282)	GTF3C3 (ENSPCTG00005000262)	ENSPCTG00005000238	ENSPCTG00005000224
Blue whale	MODERN SPECIES	18	ORC2 (ENSBMSG00010003997)	NIF3L1 (ENSBMSG00010003954)	PPIL3 (ENSBMSG00010003923)	CLK1 (ENSBMSG00010003860)	ENSBMSG00010003785	ENSBMSG00010003674 ##12	AOX1 (ENSBMSG00010003482) #13	ENSBMSG00010003395 #14	ENSBMSG00010003382 #14	KCTD18 (ENSBMSG00010003365) #15	SPATS2L (ENSBMSG00010003251) #16	MAIP1 (ENSBMSG00010003193) #17	TYW5 (ENSBMSG00010003179) #18	C2orf69 (ENSBMSG00010003167) #19	FTCDNL1 (ENSBMSG00010003148) #20	SATB2 (ENSBMSG00010003076) #22	PLCL1 (ENSBMSG00010002964) #23	BOLL (ENSBMSG00010002886) #24	MARS2 (ENSBMSG00010002857) #25	RFTN2 (ENSBMSG00010002848) #26	MOB4 (ENSBMSG00010002811)	ENSBMSG00010002778 ##27	HSPD1 (ENSBMSG00010002754) ##28	COQ10B (ENSBMSG00010002718) #29	SF3B1 (ENSBMSG00010002624) #30	ENSBMSG00010002564	ANKRD44 (ENSBMSG00010002506)	PGAP1 (ENSBMSG00010002370)	C2orf66 (ENSBMSG00010002279)	GTF3C3 (ENSBMSG00010002241)	CCDC150 (ENSBMSG00010002134)
Pecora	ANCESTRAL SPECIES	16	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Bos	ANCESTRAL SPECIES	6	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.g	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.g	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Wild yak	MODERN SPECIES	690								AOX1 (ENSBMUG00000000894) #13	SGO2 (ENSBMUG00000000973) #14	KCTD18 (ENSBMUG00000001001) #15	SPATS2L (ENSBMUG00000001103) #16	MAIP1 (ENSBMUG00000001172) #17	TYW5 (ENSBMUG00000001180) #18	C2orf69 (ENSBMUG00000001195) #19	FTCDNL1 (ENSBMUG00000001215) #20	SATB2 (ENSBMUG00000001288) #22	PLCL1 (ENSBMUG00000001392) #23
Domestic yak	MODERN SPECIES	11	NIF3L1 (ENSBGRG00000022968)	ENSBGRG00000023065	CLK1 (ENSBGRG00000023102)	BZW1 (ENSBGRG00000023222)	ENSBGRG00000023761 ##12	ENSBGRG00000026310 #12	ENSBGRG00000026671	AOX1 (ENSBGRG00000026674) #13	SGO2 (ENSBGRG00000026677) #14	KCTD18 (ENSBGRG00000026680) #15	SPATS2L (ENSBGRG00000026684) #16	MAIP1 (ENSBGRG00000026693) #17	TYW5 (ENSBGRG00000026697) #18	C2orf69 (ENSBGRG00000026703) #19	FTCDNL1 (ENSBGRG00000026708) #20	SATB2 (ENSBGRG00000026716) #22	ENSBGRG00000000192	PLCL1 (ENSBGRG00000000210) #23	BOLL (ENSBGRG00000000262) #24	MARS2 (ENSBGRG00000000375) #25	RFTN2 (ENSBGRG00000000406) #26	ENSBGRG00000000487	HSPE1 (ENSBGRG00000000521) ##27	HSPD1 (ENSBGRG00000000539) ##28	COQ10B (ENSBGRG00000000566) #29	SF3B1 (ENSBGRG00000000604) #30	ANKRD44 (ENSBGRG00000000733)	PGAP1 (ENSBGRG00000000882)	C2orf66 (ENSBGRG00000001016)	GTF3C3 (ENSBGRG00000001029)	ENSBGRG00000001058
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.g	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b.a ##28	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00940000162534.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Cow	MODERN SPECIES	11	PPIL3 (ENSBTAG00000005416)	CLK1 (ENSBTAG00000005408)	BZW1 (ENSBTAG00000006049)	AOX2 (ENSBTAG00000026812) ##12	AOX4 (ENSBTAG00000038878) #12	ENSBTAG00000047849	AOX1 (ENSBTAG00000009725) #13	SGO2 (ENSBTAG00000031579) #14	KCTD18 (ENSBTAG00000002272) #15	SPATS2L (ENSBTAG00000016092) #16	ENSBTAG00000024003	MAIP1 (ENSBTAG00000019231) #17	TYW5 (ENSBTAG00000019232) #18	C2H2orf69 (ENSBTAG00000009952) #19	ENSBTAG00000031595 #20	SATB2 (ENSBTAG00000016334) #22	PLCL1 (ENSBTAG00000007635) #23	BOLL (ENSBTAG00000031614) #24	MARS2 (ENSBTAG00000002056) #25	RFTN2 (ENSBTAG00000007652) #26	MOB4 (ENSBTAG00000019116)	HSPE1 (ENSBTAG00000012589) ##27	HSPD1 (ENSBTAG00000012586) ##28	COQ10B (ENSBTAG00000004659) #29	SF3B1 (ENSBTAG00000008915) #30	ENSBTAG00000012171	ANKRD44 (ENSBTAG00000031696)	PGAP1 (ENSBTAG00000020416)	GTF3C3 (ENSBTAG00000007779)	CCDC150 (ENSBTAG00000017695)	HECW2 (ENSBTAG00000020696)
Hybrid Bos Indicus	MODERN SPECIES	11	NIF3L1 (ENSBIXG00005031554)	PPIL3 (ENSBIXG00005031553)	CLK1 (ENSBIXG00005031552)	BZW1 (ENSBIXG00005031551)	ENSBIXG00005031550 ##12	ENSBIXG00005030534 #12	AOX1 (ENSBIXG00005008599) #13	SGO2 (ENSBIXG00005008643) #14	KCTD18 (ENSBIXG00005005902) #15	ENSBIXG00005008660	SPATS2L (ENSBIXG00005008726) #16	MAIP1 (ENSBIXG00005008787) #17	TYW5 (ENSBIXG00005008805) #18	C2orf69 (ENSBIXG00005008818) #19	FTCDNL1 (ENSBIXG00005008837) #20	SATB2 (ENSBIXG00005008954) #22	PLCL1 (ENSBIXG00005009092) #23	ENSBIXG00005009140	BOLL (ENSBIXG00005009209) #24	MARS2 (ENSBIXG00005009234) #25	RFTN2 (ENSBIXG00005009241) #26	MOB4 (ENSBIXG00005009278)	ENSBIXG00005009301 ##27	ENSBIXG00005009345 ##28	COQ10B (ENSBIXG00005009394) #29	SF3B1 (ENSBIXG00005000503) #30	ENSBIXG00005009496	ANKRD44 (ENSBIXG00005009540)	PGAP1 (ENSBIXG00005009684)	C2orf66 (ENSBIXG00005009722)	GTF3C3 (ENSBIXG00005005945)
American bison	MODERN SPECIES	3330	CLK1 (ENSBBBG00000002583)	BZW1 (ENSBBBG00000013019)	ENSBBBG00000013042 ##12	ENSBBBG00000013095 #12	ENSBBBG00000002631	AOX1 (ENSBBBG00000013130) #13	ENSBBBG00000013142 #14	ENSBBBG00000013146 #14	KCTD18 (ENSBBBG00000013155) #15	ENSBBBG00000013159	SPATS2L (ENSBBBG00000013236) #16	MAIP1 (ENSBBBG00000001643) #17	TYW5 (ENSBBBG00000013257) #18	C2orf69 (ENSBBBG00000002681) #19	FTCDNL1 (ENSBBBG00000008285) #20	SATB2 (ENSBBBG00000013343) #22	PLCL1 (ENSBBBG00000002738) #23	BOLL (ENSBBBG00000013412) #24	MARS2 (ENSBBBG00000013415) #25	RFTN2 (ENSBBBG00000002765) #26	MOB4 (ENSBBBG00000013501)	ENSBBBG00000013516 #27	HSPD1 (ENSBBBG00000013534) ##28	ENSBBBG00000007252 #29	ENSBBBG00000013596 #30	ENSBBBG00000013601	ANKRD44 (ENSBBBG00000013667)	PGAP1 (ENSBBBG00000013723)	C2orf66 (ENSBBBG00000013730)	GTF3C3 (ENSBBBG00000002934)	ENSBBBG00000013757
Caprinae	ANCESTRAL SPECIES	5	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493.h #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b.e	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.s #29	ENSGT00940000155367.t #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Rambouillet Sheep	MODERN SPECIES	11	NIF3L1 (ENSOARG00020016593)	PPIL3 (ENSOARG00020016501)	CLK1 (ENSOARG00020016395)	BZW1 (ENSOARG00020015764)	ENSOARG00020015365 ##12	ENSOARG00020015282	ENSOARG00020015070 #12	AOX1 (ENSOARG00020014833) #13	ENSOARG00020014683 #15	ENSOARG00020014668	SPATS2L (ENSOARG00020014270) #16	MAIP1 (ENSOARG00020014186) #17	TYW5 (ENSOARG00020014145) #18	C2orf69 (ENSOARG00020014115) #19	FTCDNL1 (ENSOARG00020013918) #20	SATB2 (ENSOARG00020013534) #22	ENSOARG00020013422	ENSOARG00020013393	ENSOARG00020013380	ENSOARG00020013353	ENSOARG00020013326	ENSOARG00020013287	BOLL (ENSOARG00020012643) #24	MARS2 (ENSOARG00020012596) #25	RFTN2 (ENSOARG00020012524) #26	ENSOARG00020012334	HSP10 (ENSOARG00020012227) ##27	ENSOARG00020012172 ##28	COQ10B (ENSOARG00020011999) #29	SF3B1 (ENSOARG00020011806) #30	ANKRD44 (ENSOARG00020010197)
Goat	MODERN SPECIES	11	NIF3L1 (ENSCHIG00000009478)	PPIL3 (ENSCHIG00000019642)	CLK1 (ENSCHIG00000018314)	BZW1 (ENSCHIG00000019964)	ENSCHIG00000020570 ##12	ENSCHIG00000013677 #12	ENSCHIG00000019390	AOX1 (ENSCHIG00000013439) #13	SGO2 (ENSCHIG00000013638) #14	KCTD18 (ENSCHIG00000022753) #15	SPATS2L (ENSCHIG00000026377) #16	MAIP1 (ENSCHIG00000007507) #17	ENSCHIG00000017324 #18	ENSCHIG00000011016 #19	FTCDNL1 (ENSCHIG00000022126) #20	SATB2 (ENSCHIG00000022376) #22	PLCL1 (ENSCHIG00000013331) #23	ENSCHIG00000011685	ENSCHIG00000021317	BOLL (ENSCHIG00000024995) #24	MARS2 (ENSCHIG00000016548) #25	RFTN2 (ENSCHIG00000012903) #26	ENSCHIG00000026973	HSPE1 (ENSCHIG00000009467) ##27	HSPD1 (ENSCHIG00000004382) ##28	ENSCHIG00000020913 #29	SF3B1 (ENSCHIG00000015226) #30	ANKRD44 (ENSCHIG00000017665)	ENSCHIG00000012550	PGAP1 (ENSCHIG00000018177)	GTF3C3 (ENSCHIG00000016485)
Siberian musk deer	MODERN SPECIES	351	PPIL3 (ENSMMSG00000024329)	CLK1 (ENSMMSG00000024326)	ENSMMSG00000024321	ENSMMSG00000024314 ##12	ENSMMSG00000013161 #12	ENSMMSG00000012463	AOX1 (ENSMMSG00000012371) #13	SGO2 (ENSMMSG00000012334) #14	KCTD18 (ENSMMSG00000012309) #15	SPATS2L (ENSMMSG00000011944) #16	MAIP1 (ENSMMSG00000011886) #17	TYW5 (ENSMMSG00000011859) #18	C2orf69 (ENSMMSG00000011836) #19	ENSMMSG00000011819	ENSMMSG00000011780 #20	SATB2 (ENSMMSG00000011682) #22
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000004999	BZW1 (ENSCHYG00000009251)	ENSCHYG00000009654 ##12	ENSCHYG00000009851 #12	ENSCHYG00000010410	ENSCHYG00000010452	AOX1 (ENSCHYG00000010517) #13	SGO2 (ENSCHYG00000011236) #14	KCTD18 (ENSCHYG00000011325) #15	SPATS2L (ENSCHYG00000011390) #16	ENSCHYG00000011736	MAIP1 (ENSCHYG00000011759) #17	TYW5 (ENSCHYG00000011850) #18	C2orf69 (ENSCHYG00000011903) #19	ENSCHYG00000011965 #20	SATB2 (ENSCHYG00000012100) #22	ENSCHYG00000012371	PLCL1 (ENSCHYG00000012427) #23	BOLL (ENSCHYG00000012765) #24	MARS2 (ENSCHYG00000013177) #25	RFTN2 (ENSCHYG00000013201) #26	MOB4 (ENSCHYG00000013303)	ENSCHYG00000013442 #27	ENSCHYG00000013593 ##28	ENSCHYG00000013673 #29	SF3B1 (ENSCHYG00000013853) #30	ANKRD44 (ENSCHYG00000014222)	PGAP1 (ENSCHYG00000015550)	C2orf66 (ENSCHYG00000015983)	GTF3C3 (ENSCHYG00000016098)	CCDC150 (ENSCHYG00000016506)
Camelidae	ANCESTRAL SPECIES	58	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000006350.m.a.c.b.a.b #27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Arabian camel	MODERN SPECIES	31	PPIL3 (ENSCDRG00005007234)	CLK1 (ENSCDRG00005007272)	BZW1 (ENSCDRG00005008038)	ENSCDRG00005008482 ##12	ENSCDRG00005008740 #12	AOX1 (ENSCDRG00005009121) #13	ENSCDRG00005009409 #14	ENSCDRG00005009460 #14	KCTD18 (ENSCDRG00005009496) #15	SPATS2L (ENSCDRG00005009592) #16	ENSCDRG00005010296	MAIP1 (ENSCDRG00005010319) #17	TYW5 (ENSCDRG00005010376) #18	C2orf69 (ENSCDRG00005010427) #19	FTCDNL1 (ENSCDRG00005010462) #20	SATB2 (ENSCDRG00005010563) #22	PLCL1 (ENSCDRG00005010932) #23	BOLL (ENSCDRG00005011111) #24	MARS2 (ENSCDRG00005011548) #25	RFTN2 (ENSCDRG00005011566) #26	MOB4 (ENSCDRG00005011619)	HSPE1 (ENSCDRG00005011802) ##27	HSPD1 (ENSCDRG00005011897) ##28	COQ10B (ENSCDRG00005012028) #29	ENSCDRG00005012185	SF3B1 (ENSCDRG00005012215) #30	ANKRD44 (ENSCDRG00005012443)	PGAP1 (ENSCDRG00005012687)	C2orf66 (ENSCDRG00005012843)	GTF3C3 (ENSCDRG00005012878)	CCDC150 (ENSCDRG00005012991)
Alpaca	MODERN SPECIES	63													MAIP1 (ENSVPAG00000007005) #17	TYW5 (ENSVPAG00000007004) #18	C2orf69 (ENSVPAG00000007002) #19	SATB2 (ENSVPAG00000007001) #22
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Caniformia	ANCESTRAL SPECIES	14	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.b ##27	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.f	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.p #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.f	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01010000225408	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00940000154276.kb.a.b	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.p #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929
American black bear	MODERN SPECIES	846															ENSUAMG00000028250 #20	SATB2 (ENSUAMG00000028249) #22
Polar bear	MODERN SPECIES	142	ORC2 (ENSUMAG00000021479)	PPIL3 (ENSUMAG00000021460)	NIF3L1 (ENSUMAG00000021455)	CLK1 (ENSUMAG00000021445)	BZW1 (ENSUMAG00000021441)	ENSUMAG00000021399 ##12	ENSUMAG00000021134 #12	AOX1 (ENSUMAG00000021073) #13	SGO2 (ENSUMAG00000021068) #14	KCTD18 (ENSUMAG00000021066) #15	SPATS2L (ENSUMAG00000021060) #16	MAIP1 (ENSUMAG00000021043) #17	TYW5 (ENSUMAG00000021039) #18	C2orf69 (ENSUMAG00000021037) #19	FTCDNL1 (ENSUMAG00000021033) #20	SATB2 (ENSUMAG00000021003) #22	PLCL1 (ENSUMAG00000020984) #23	ENSUMAG00000020978	ENSUMAG00000020976	BOLL (ENSUMAG00000020969) #24	MARS2 (ENSUMAG00000020961) #25	RFTN2 (ENSUMAG00000020958) #26	MOB4 (ENSUMAG00000020955)	HSPE1 (ENSUMAG00000020954) ##27	HSPD1 (ENSUMAG00000020952) ##28	COQ10B (ENSUMAG00000020949) #29	SF3B1 (ENSUMAG00000020945) #30	ANKRD44 (ENSUMAG00000020937)	PGAP1 (ENSUMAG00000020815)	GTF3C3 (ENSUMAG00000020787)	CCDC150 (ENSUMAG00000020726)
Giant Panda	MODERN SPECIES	11	ORC2 (ENSAMEG00000005940)	NIF3L1 (ENSAMEG00000005921)	PPIL3 (ENSAMEG00000005917)	CLK1 (ENSAMEG00000005887)	BZW1 (ENSAMEG00000005859)	AOX2 (ENSAMEG00000005633) ##12	AOX4 (ENSAMEG00000005561) #12	AOX1 (ENSAMEG00000005445) #13	SGO2 (ENSAMEG00000005435) #14	KCTD18 (ENSAMEG00000005423) #15	SPATS2L (ENSAMEG00000005405) #16	MAIP1 (ENSAMEG00000005390) #17	TYW5 (ENSAMEG00000005386) #18	C2orf69 (ENSAMEG00000005381) #19	ENSAMEG00000023460	SATB2 (ENSAMEG00000005350) #22	ENSAMEG00000019732	PLCL1 (ENSAMEG00000013707) #23	BOLL (ENSAMEG00000013712) #24	MARS2 (ENSAMEG00000019748) #25	RFTN2 (ENSAMEG00000013737) #26	MOB4 (ENSAMEG00000013751)	ENSAMEG00000013769 ##27	HSPD1 (ENSAMEG00000013770) ##28	COQ10B (ENSAMEG00000013802) #29	SF3B1 (ENSAMEG00000013809) #30	ANKRD44 (ENSAMEG00000013836)	PGAP1 (ENSAMEG00000013887)	C2orf66 (ENSAMEG00000013924)	GTF3C3 (ENSAMEG00000013925)	CCDC150 (ENSAMEG00000013946)
Mustelinae	ANCESTRAL SPECIES	44	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.b.a.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
American mink	MODERN SPECIES	40	NIF3L (ENSNVIG00000008895)	ENSNVIG00000008933	ENSNVIG00000008938	ENSNVIG00000008952	BZW1 (ENSNVIG00000008992)	ENSNVIG00000009087 ##12	ENSNVIG00000009216 #12	AOX1 (ENSNVIG00000009846) #13	SGO2 (ENSNVIG00000009949) #14	KCTD18 (ENSNVIG00000009981) #15	SPATS2L (ENSNVIG00000010010) #16	MAIP1 (ENSNVIG00000010220) #17	TYW5 (ENSNVIG00000010238) #18	C2orf69 (ENSNVIG00000010249) #19	ENSNVIG00000010260 #20	SATB2 (ENSNVIG00000010289) #22	PLCL1 (ENSNVIG00000010416) #23	ENSNVIG00000010433	BOLL (ENSNVIG00000010444) #24	MARS2 (ENSNVIG00000010510) #25	RFTN2 (ENSNVIG00000010521) #26	PHOCN (ENSNVIG00000010530)	ENSNVIG00000010568 ##27	ENSNVIG00000010575 ##28	COQ10B (ENSNVIG00000010606) #29	SF3B1 (ENSNVIG00000010631) #30	ANKRD44 (ENSNVIG00000010686)	PGAP1 (ENSNVIG00000010723)	C2orf66 (ENSNVIG00000010821)	GTF3C3 (ENSNVIG00000010824)	CCDC150 (ENSNVIG00000010849)
Ferret	MODERN SPECIES	333									SGO2 (ENSMPUG00000008053) #14	KCTD18 (ENSMPUG00000008044) #15	SPATS2L (ENSMPUG00000008030) #16	MAIP1 (ENSMPUG00000008001) #17	TYW5 (ENSMPUG00000007993) #18	C2orf69 (ENSMPUG00000007987) #19	ENSMPUG00000007983	SATB2 (ENSMPUG00000007972) #22	PLCL1 (ENSMPUG00000007965) #23	BOLL (ENSMPUG00000007922) #24	MARS2 (ENSMPUG00000019823) #25	ENSMPUG00000019822	RFTN2 (ENSMPUG00000007918) #26	MOB4 (ENSMPUG00000007910)	ENSMPUG00000007818 ##28	COQ10B (ENSMPUG00000007810) #29	SF3B1 (ENSMPUG00000007799) #30	ANKRD44 (ENSMPUG00000007785)	PGAP1 (ENSMPUG00000007770)	GTF3C3 (ENSMPUG00000007764)	CCDC150 (ENSMPUG00000007750)	HECW2 (ENSMPUG00000007553)	STK17B (ENSMPUG00000007548)
Canidae	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01070000254992	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.b ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.c	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000182922.a.a.a.b.a.a.b	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT01070000254992	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.b ##27	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Dingo	MODERN SPECIES	398	HYCC2 (ENSCAFG00020003567)	ORC2 (ENSCAFG00020003630)	NIF3L1 (ENSCAFG00020004364)	PPIL3 (ENSCAFG00020004369)	CLK1 (ENSCAFG00020004400)	ENSCAFG00020004433	ENSCAFG00020004462 ##12	ENSCAFG00020004494 #12	ENSCAFG00020004535	SGO2 (ENSCAFG00020004540) #14	KCTD18 (ENSCAFG00020004542) #15	SPATS2L (ENSCAFG00020004547) #16	MAIP1 (ENSCAFG00020004558) #17	ENSCAFG00020004570 #18	C2orf69 (ENSCAFG00020004572) #19	SATB2 (ENSCAFG00020004584) #22	PLCL1 (ENSCAFG00020004643) #23	ENSCAFG00020004654	BOLL (ENSCAFG00020004659) #24	MARS2 (ENSCAFG00020004676) #25	RFTN2 (ENSCAFG00020004690) #26	MOB4 (ENSCAFG00020004694)	ENSCAFG00020004700 ##27	HSPD1 (ENSCAFG00020004710) ##28	ENSCAFG00020004741	COQ10B (ENSCAFG00020004745) #29	SF3B1 (ENSCAFG00020004750) #30	ANKRD44 (ENSCAFG00020004766)	PGAP1 (ENSCAFG00020004924)	GTF3C3 (ENSCAFG00020004945)	CCDC150 (ENSCAFG00020004958)
Dog	MODERN SPECIES	30	ORC2 (ENSCAFG00845029735)	NIF3L1 (ENSCAFG00845029603)	PPIL3 (ENSCAFG00845029569)	CLK1 (ENSCAFG00845029455)	ENSCAFG00845029244	AOX2 (ENSCAFG00845029172) ##12	AOX4 (ENSCAFG00845028797) #12	RPL21 (ENSCAFG00845028706)	SGO2 (ENSCAFG00845028523) #14	KCTD18 (ENSCAFG00845028480) #15	ENSCAFG00845028453	SPATS2L (ENSCAFG00845028292) #16	MAIP1 (ENSCAFG00845028191) #17	TYW5 (ENSCAFG00845028098) #18	C2orf69 (ENSCAFG00845028048) #19	SATB2 (ENSCAFG00845027789) #22	PLCL1 (ENSCAFG00845027611) #23	BOLL (ENSCAFG00845027465) #24	MARS2 (ENSCAFG00845027432) #25	RFTN2 (ENSCAFG00845027373) #26	ENSCAFG00845027301	HSPE1 (ENSCAFG00845027216)	HSPD1 (ENSCAFG00845027075) ##28	SF3B1 (ENSCAFG00845026632) #30	COQ10B (ENSCAFG00845026337) #29	ENSCAFG00845026214	ANKRD44 (ENSCAFG00845025354)	PGAP1 (ENSCAFG00845024751)	C2orf66 (ENSCAFG00845024629)	GTF3C3 (ENSCAFG00845024524)	CCDC150 (ENSCAFG00845023218)
Red fox	MODERN SPECIES	41	ORC2 (ENSVVUG00000018996)	NIF3L1 (ENSVVUG00000019010)	PPIL3 (ENSVVUG00000019021)	CLK1 (ENSVVUG00000019051)	ENSVVUG00000019055	BZW1 (ENSVVUG00000019058)	ENSVVUG00000019458 ##12	ENSVVUG00000025395 #12	SGO2 (ENSVVUG00000025845) #14	KCTD18 (ENSVVUG00000025846) #15	ENSVVUG00000025847	SPATS2L (ENSVVUG00000025851) #16	MAIP1 (ENSVVUG00000025867) #17	TYW5 (ENSVVUG00000025871) #18	C2orf69 (ENSVVUG00000025875) #19	SATB2 (ENSVVUG00000025880) #22	ENSVVUG00000025893	PLCL1 (ENSVVUG00000025896) #23	ENSVVUG00000025899	BOLL (ENSVVUG00000025901) #24	MARS2 (ENSVVUG00000025921) #25	RFTN2 (ENSVVUG00000025925) #26	MOB4 (ENSVVUG00000025930)	ENSVVUG00000025937 ##27	HSPD1 (ENSVVUG00000025940) ##28	COQ10B (ENSVVUG00000025944) #29	SF3B1 (ENSVVUG00000025948) #30	ANKRD44 (ENSVVUG00000025957)	PGAP1 (ENSVVUG00000025981)	GTF3C3 (ENSVVUG00000025988)	CCDC150 (ENSVVUG00000025997)
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234.k #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.o #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234.k #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.o #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234.k #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00390000004856.w.b	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.o #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
lion	MODERN SPECIES	8	NDUFB3 (ENSPLOG00000015772)	HYCC2 (ENSPLOG00000015803)	ORC2 (ENSPLOG00000015970)	NIF3L1 (ENSPLOG00000016032)	PPIL3 (ENSPLOG00000016086)	CLK1 (ENSPLOG00000016118)	BZW1 (ENSPLOG00000016320)	ENSPLOG00000016579 ##12	SGO2 (ENSPLOG00000016840) #14	KCTD18 (ENSPLOG00000016872) #15	SPATS2L (ENSPLOG00000016944) #16	MAIP1 (ENSPLOG00000010863) #17	TYW5 (ENSPLOG00000010891) #18	C2orf69 (ENSPLOG00000010947) #19	FTCDNL1 (ENSPLOG00000010989) #20	SATB2 (ENSPLOG00000011078) #22	PLCL1 (ENSPLOG00000011340) #23	ENSPLOG00000011407	BOLL (ENSPLOG00000011460) #24	MARS2 (ENSPLOG00000011689) #25	RFTN2 (ENSPLOG00000011715) #26	MOB4 (ENSPLOG00000011894)	ENSPLOG00000012097 ##27	HSPD1 (ENSPLOG00000012200) ##28	ENSPLOG00000012317 #29	ENSPLOG00000012415	SF3B1 (ENSPLOG00000012481) #30	ANKRD44 (ENSPLOG00000012744)	PGAP1 (ENSPLOG00000012908)	GTF3C3 (ENSPLOG00000013217)	CCDC150 (ENSPLOG00000013330)
leopard	MODERN SPECIES	115	HYCC2 (ENSPPRG00000010091)	ORC2 (ENSPPRG00000010416)	NIF3L1 (ENSPPRG00000011329)	PPIL3 (ENSPPRG00000011604)	CLK1 (ENSPPRG00000018038)	BZW1 (ENSPPRG00000021144)	ENSPPRG00000001179 ##12	ENSPPRG00000002911 #12	SGO2 (ENSPPRG00000003606) #14	KCTD18 (ENSPPRG00000003708) #15	SPATS2L (ENSPPRG00000005755) #16	MAIP1 (ENSPPRG00000005920) #17	TYW5 (ENSPPRG00000005974) #18	C2orf69 (ENSPPRG00000006014) #19	FTCDNL1 (ENSPPRG00000006344) #20	SATB2 (ENSPPRG00000006763) #22	ENSPPRG00000006827	ENSPPRG00000018398	PLCL1 (ENSPPRG00000006990) #23	BOLL (ENSPPRG00000007352) #24	MARS2 (ENSPPRG00000018464) #25	RFTN2 (ENSPPRG00000007473) #26	ENSPPRG00000007733 ##27	MOB4 (ENSPPRG00000008095)	ENSPPRG00000008279 ##28	ENSPPRG00000018513	ENSPPRG00000008688 #29	SF3B1 (ENSPPRG00000009090) #30	ANKRD44 (ENSPPRG00000009896)	PGAP1 (ENSPPRG00000010301)	C2orf66 (ENSPPRG00000010325)
Tiger	MODERN SPECIES	481										ENSPTIG00000017025 #15	SPATS2L (ENSPTIG00000009880) #16	MAIP1 (ENSPTIG00000007574) #17	TYW5 (ENSPTIG00000005502) #18	C2orf69 (ENSPTIG00000004162) #19	FTCDNL1 (ENSPTIG00000019386) #20	SATB2 (ENSPTIG00000015066) #22	PLCL1 (ENSPTIG00000013578) #23	BOLL (ENSPTIG00000011925) #24	RFTN2 (ENSPTIG00000010229) #26	MOB4 (ENSPTIG00000008517)	HSPE1 (ENSPTIG00000007777) ##27	HSPD1 (ENSPTIG00000006760) ##28	ENSPTIG00000004508 #29	SF3B1 (ENSPTIG00000021557) #30	ANKRD44 (ENSPTIG00000018232)	PGAP1 (ENSPTIG00000013798)	C2orf66 (ENSPTIG00000013318)	GTF3C3 (ENSPTIG00000011830)	CCDC150 (ENSPTIG00000010300)	ENSPTIG00000007344	HECW2 (ENSPTIG00000004499)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.b ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.r #29	ENSGT00390000018393 #30	ENSGT00950000182908.D.f	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Megabat	MODERN SPECIES	173																SATB2 (ENSPVAG00000012029) #22
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.d ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367.r #29	ENSGT00390000018393 #30	ENSGT00950000182908.D.f	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Greater horseshoe bat	MODERN SPECIES	26	ORC2 (ENSRFEG00010017722)	NIF3L1 (ENSRFEG00010017775)	PPIL3 (ENSRFEG00010017851)	CLK1 (ENSRFEG00010017933)	BZW1 (ENSRFEG00010018183)	ENSRFEG00010018448 ##12	ENSRFEG00010019480 #12	AOX1 (ENSRFEG00010021989) #13	SGO2 (ENSRFEG00010022000) #14	KCTD18 (ENSRFEG00010022002) #15	SPATS2L (ENSRFEG00010022016) #16	MAIP1 (ENSRFEG00010022032) #17	TYW5 (ENSRFEG00010022036) #18	C2orf69 (ENSRFEG00010022039) #19	FTCDNL1 (ENSRFEG00010022040) #20	SATB2 (ENSRFEG00010022046) #22	PLCL1 (ENSRFEG00010022056) #23	BOLL (ENSRFEG00010022065) #24	MARS2 (ENSRFEG00010022069) #25	RFTN2 (ENSRFEG00010022072) #26	ENSRFEG00010022073	MOB4 (ENSRFEG00010022077)	ENSRFEG00010022080 ##27	HSPD1 (ENSRFEG00010022083) ##28	ENSRFEG00010022086 #29	SF3B1 (ENSRFEG00010022087) #30	ANKRD44 (ENSRFEG00010022091)	PGAP1 (ENSRFEG00010022103)	GTF3C3 (ENSRFEG00010022114)	CCDC150 (ENSRFEG00010022122)	HECW2 (ENSRFEG00010022130)
Microbat	MODERN SPECIES	940	ORC2 (ENSMLUG00000001662)	NIF3L1 (ENSMLUG00000001658)	PPIL3 (ENSMLUG00000013189)	CLK1 (ENSMLUG00000000344)	BZW1 (ENSMLUG00000001653)	ENSMLUG00000022412 ##12	ENSMLUG00000027760 #12	AOX1 (ENSMLUG00000016684) #13	SGO2 (ENSMLUG00000004245) #14	KCTD18 (ENSMLUG00000006605) #15	SPATS2L (ENSMLUG00000006594) #16	MAIP1 (ENSMLUG00000015960) #17	TYW5 (ENSMLUG00000015955) #18	C2orf69 (ENSMLUG00000026751) #19	ENSMLUG00000011411 #20	SATB2 (ENSMLUG00000001554) #22	PLCL1 (ENSMLUG00000002677) #23	BOLL (ENSMLUG00000004999) #24	RFTN2 (ENSMLUG00000004991) #26	MOB4 (ENSMLUG00000004971)	ENSMLUG00000000883	HSPE1 (ENSMLUG00000000878) ##27	ENSMLUG00000000871 ##28	COQ10B (ENSMLUG00000000865) #29	SF3B1 (ENSMLUG00000000840) #30	ENSMLUG00000005254	ANKRD44 (ENSMLUG00000010842)	PGAP1 (ENSMLUG00000010784)	GTF3C3 (ENSMLUG00000024692)	CCDC150 (ENSMLUG00000001986)	HECW2 (ENSMLUG00000007654)
Equus	ANCESTRAL SPECIES	18	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b.b #13	ENSGT00950000183114.a.b.b.f.b.a #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00390000005254.i.a.b	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285
Donkey	MODERN SPECIES	24	NIF3L1 (ENSEASG00005001400)	CLK1 (ENSEASG00005000996)	BZW1 (ENSEASG00005000922)	ENSEASG00005021400 ##12	ENSEASG00005028089 #12	ENSEASG00005029204 ##12	ENSEASG00005024840 #13	ENSEASG00005027058 #13	SGO2 (ENSEASG00005024538) #14	KCTD18 (ENSEASG00005020042) #15	SPATS2L (ENSEASG00005020050) #16	MAIP1 (ENSEASG00005020067) #17	TYW5 (ENSEASG00005026976) #18	C2orf69 (ENSEASG00005031146) #19	ENSEASG00005020080 #20	ENSEASG00005029514 #22	PLCL1 (ENSEASG00005020113) #23	ENSEASG00005020114	BOLL (ENSEASG00005020122) #24	MARS2 (ENSEASG00005020133) #25	RFTN2 (ENSEASG00005020136) #26	MOB4 (ENSEASG00005020142)	HSPE1 (ENSEASG00005034821) ##27	ENSEASG00005020152 ##28	COQ10B (ENSEASG00005032559) #29	SF3B1 (ENSEASG00005020159) #30	ENSEASG00005020167	ANKRD44 (ENSEASG00005020169)	PGAP1 (ENSEASG00005020202)	C2orf66 (ENSEASG00005029887)	GTF3C3 (ENSEASG00005020250)
Horse	MODERN SPECIES	9	CLK1 (ENSECAG00000015355)	BZW1 (ENSECAG00000011768)	ENSECAG00000015199 ##12	AOX4 (ENSECAG00000024701) #12	ENSECAG00000032497 #12	ENSECAG00000058396	ENSECAG00000007830 #13	ENSECAG00000018147 #13	SGO2 (ENSECAG00000006038) #14	KCTD18 (ENSECAG00000001039) #15	SPATS2L (ENSECAG00000018564) #16	MAIP1 (ENSECAG00000050073) #17	TYW5 (ENSECAG00000014128) #18	C18H2orf69 (ENSECAG00000014107) #19	ENSECAG00000013663 #20	SATB2 (ENSECAG00000010043) #22	ENSECAG00000058569	BOLL (ENSECAG00000040654) #24	PLCL1 (ENSECAG00000007274) #23	MARS2 (ENSECAG00000004931) #25	RFTN2 (ENSECAG00000021296) #26	MOB4 (ENSECAG00000015560)	ENSECAG00000055696	ENSECAG00000049872 ##27	HSPD1 (ENSECAG00000008968) ##28	COQ10B (ENSECAG00000006436) #29	SF3B1 (ENSECAG00000021657) #30	ENSECAG00000034847	ANKRD44 (ENSECAG00000008835)	PGAP1 (ENSECAG00000019980)	C2orf66 (ENSECAG00000058124)
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Xenarthra	ANCESTRAL SPECIES	28	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22
Sloth	MODERN SPECIES	1727																SATB2 (ENSCHOG00000012005) #22
Armadillo	MODERN SPECIES	1606	ENSDNOG00000007984	ORC2 (ENSDNOG00000001397)	NIF3L1 (ENSDNOG00000042985)	PPIL3 (ENSDNOG00000039120)	CLK1 (ENSDNOG00000007543)	ENSDNOG00000044684 ##12	ENSDNOG00000045945 #12	AOX1 (ENSDNOG00000017910) #13	SGO2 (ENSDNOG00000041594) #14	KCTD18 (ENSDNOG00000033036) #15	SPATS2L (ENSDNOG00000011539) #16	MAIP1 (ENSDNOG00000031166) #17	TYW5 (ENSDNOG00000016467) #18	C2orf69 (ENSDNOG00000031567) #19	ENSDNOG00000031405 #20	SATB2 (ENSDNOG00000001292) #22	ENSDNOG00000039662	EGLN2 (ENSDNOG00000044897)	RAB4B (ENSDNOG00000035069)	MIA (ENSDNOG00000025220)	ENSDNOG00000018717	ACTMAP (ENSDNOG00000034966)	ITPKC (ENSDNOG00000040932)	COQ8B (ENSDNOG00000000156)	NUMBL (ENSDNOG00000000154)	LTBP4 (ENSDNOG00000045716)	SHKBP1 (ENSDNOG00000007810)	ENSDNOG00000046051
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b ##12	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.c.a ##27	ENSGT00390000005727.a.b.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Elephant	MODERN SPECIES	301	ORC2 (ENSLAFG00000022430)	NIF3L1 (ENSLAFG00000009897)	ENSLAFG00000009894	CLK1 (ENSLAFG00000009891)	BZW1 (ENSLAFG00000009883)	ENSLAFG00000026161 ##12	ENSLAFG00000028503 #12	AOX1 (ENSLAFG00000007070) #13	SGO2 (ENSLAFG00000028451) #14	KCTD18 (ENSLAFG00000003281) #15	SPATS2L (ENSLAFG00000001437) #16	MAIP1 (ENSLAFG00000011639) #17	TYW5 (ENSLAFG00000018708) #18	C2orf69 (ENSLAFG00000018707) #19	ENSLAFG00000030925 #20	SATB2 (ENSLAFG00000002924) #22	PLCL1 (ENSLAFG00000016349) #23	BOLL (ENSLAFG00000010956) #24	MARS2 (ENSLAFG00000030667) #25	RFTN2 (ENSLAFG00000000141) #26	MOB4 (ENSLAFG00000008054)	ENSLAFG00000000057 ##27	HSPD1 (ENSLAFG00000000053) ##28	COQ10B (ENSLAFG00000000052) #29	SF3B1 (ENSLAFG00000001956) #30	ANKRD44 (ENSLAFG00000002537)	PGAP1 (ENSLAFG00000022372)	GTF3C3 (ENSLAFG00000001792)	CCDC150 (ENSLAFG00000008819)	HECW2 (ENSLAFG00000011976)	STK17B (ENSLAFG00000011972)
Hyrax	MODERN SPECIES	1548																SATB2 (ENSPCAG00000012822) #22
Tenrec	MODERN SPECIES	1907																SATB2 (ENSETEG00000013425) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT01050000244869.a.a.a.b.a.a.a.a.a	ENSGT01050000244869.a.a.a.b.a.a.a.b.a	ENSGT00940000162662	ENSGT01050000244869.a.a.a.b.a.b.d	ENSGT01050000244869.a.a.a.b.a.b.c	ENSGT01050000244869.a.a.a.b.a.a.a.b.b	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT01050000244869.a.a.a.b.a.a.a.a.a	ENSGT01050000244869.a.a.a.b.a.a.a.b.a	ENSGT00940000162662	ENSGT01050000244869.a.a.a.b.a.b.d	ENSGT01050000244869.a.a.a.b.a.b.c	ENSGT01050000244869.a.a.a.b.a.a.b.c	ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Diprotodontia	ANCESTRAL SPECIES	11							ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Diprotodontia_a	ANCESTRAL SPECIES	9							ENSGT00950000183114.a.b.b.f.a.a #12	ENSGT00950000183114.a.b.b.f.b #13	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00550000075136 #25	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.m.a.b #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00390000015052.j.b
koala	MODERN SPECIES	52																SATB2 (ENSPCIG00000011693) #22	ENSPCIG00000014254	PLCL1 (ENSPCIG00000015570) #23	ENSPCIG00000010605 #24	MARS2 (ENSPCIG00000010610) #25	RFTN2 (ENSPCIG00000010611) #26	ENSPCIG00000010617	ENSPCIG00000010634 #27	HSPD1 (ENSPCIG00000010636) ##28	COQ10B (ENSPCIG00000010639) #29	ENSPCIG00000032633	SF3B1 (ENSPCIG00000010642) #30	ANKRD44 (ENSPCIG00000010651)	PGAP1 (ENSPCIG00000010659)	GTF3C3 (ENSPCIG00000010674)	ENSPCIG00000010684
Common wonbat	MODERN SPECIES	1018	ENSVURG00010015914	ENSVURG00010015949	ENSVURG00010016231	ENSVURG00010016251	ENSVURG00010016261	ENSVURG00010016266	ENSVURG00010016286	ENSVURG00010016392	ENSVURG00010016490	KCTD18 (ENSVURG00010016512) #15	SPATS2L (ENSVURG00010016539) #16	MAIP1 (ENSVURG00010016655) #17	TYW5 (ENSVURG00010016662) #18	C2orf69 (ENSVURG00010016673) #19	ENSVURG00010016695 #20	SATB2 (ENSVURG00010016725) #22	ENSVURG00010016787	ENSVURG00010016799	ENSVURG00010016811	PLCL1 (ENSVURG00010016821) #23	BOLL (ENSVURG00010016845) #24	MARS2 (ENSVURG00010016927) #25	RFTN2 (ENSVURG00010016931) #26	MOB4 (ENSVURG00010016938)	ENSVURG00010016957 #27	HSPD1 (ENSVURG00010016966) ##28	COQ10B (ENSVURG00010016979) #29	SF3B1 (ENSVURG00010016994) #30	ANKRD44 (ENSVURG00010017027)	PGAP1 (ENSVURG00010017062)	C2orf66 (ENSVURG00010017088)
Wallaby	MODERN SPECIES	2771																ENSMEUG00000005161 #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000028897	ENSSHAG00000001437	ENSSHAG00000017209	ENSSHAG00000017107	ENSSHAG00000017063	ENSSHAG00000016877 #12	ENSSHAG00000016703 #12	ENSSHAG00000016525 #13	ENSSHAG00000024050 #14	KCTD18 (ENSSHAG00000016332) #15	SPATS2L (ENSSHAG00000016122) #16	MAIP1 (ENSSHAG00000014443) #17	TYW5 (ENSSHAG00000014351) #18	C2orf69 (ENSSHAG00000014333) #19	FTCDNL1 (ENSSHAG00000013838) #20	SATB2 (ENSSHAG00000011077) #22	PLCL1 (ENSSHAG00000018454) #23	BOLL (ENSSHAG00000018057) #24	RFTN2 (ENSSHAG00000017876) #26	MARS2 (ENSSHAG00000017980) #25	MOB4 (ENSSHAG00000017821)	HSPE1 (ENSSHAG00000017770) #27	HSPD1 (ENSSHAG00000017750) ##28	COQ10B (ENSSHAG00000017719) #29	SF3B1 (ENSSHAG00000017564) #30	ANKRD44 (ENSSHAG00000016824)	PGAP1 (ENSSHAG00000016631)	C2orf66 (ENSSHAG00000029653)	GTF3C3 (ENSSHAG00000016483)	CCDC150 (ENSSHAG00000016389)	HECW2 (ENSSHAG00000015049)
Opossum	MODERN SPECIES	3	ENSMODG00000045687	ENSMODG00000037855	ENSMODG00000048837	ENSMODG00000024581	ENSMODG00000051203	AOX4 (ENSMODG00000028424) #12	ENSMODG00000041712 #12	AOX1 (ENSMODG00000012485) #13	ENSMODG00000012421 #14	KCTD18 (ENSMODG00000012419) #15	SPATS2L (ENSMODG00000012413) #16	MAIP1 (ENSMODG00000012389) #17	TYW5 (ENSMODG00000012381) #18	C2orf69 (ENSMODG00000012380) #19	ENSMODG00000024601 #20	SATB2 (ENSMODG00000012352) #22	PLCL1 (ENSMODG00000012331) #23	BOLL (ENSMODG00000012323) #24	MARS2 (ENSMODG00000024604) #25	RFTN2 (ENSMODG00000012311) #26	MOB4 (ENSMODG00000012305)	HSPE1 (ENSMODG00000012295) ##27	ENSMODG00000012289 ##28	COQ10B (ENSMODG00000012281) #29	SF3B1 (ENSMODG00000012275) #30	ENSMODG00000012241	ANKRD44 (ENSMODG00000012238)	PGAP1 (ENSMODG00000012214)	C2orf66 (ENSMODG00000028631)	GTF3C3 (ENSMODG00000012196)	CCDC150 (ENSMODG00000012183)
Platypus	MODERN SPECIES	18	ENSOANG00000003495	ENSOANG00000045194	NDUFB3 (ENSOANG00000036170)	HYCC2 (ENSOANG00000044954)	ORC2 (ENSOANG00000010096)	NIF3L1 (ENSOANG00000010095)	ENSOANG00000008065	CLK1 (ENSOANG00000012539)	BZW1 (ENSOANG00000010824)	ENSOANG00000049296 #12	ENSOANG00000044935 #14	ENSOANG00000045688 #16	ENSOANG00000036911 #17	TYW5 (ENSOANG00000040342) #18	ENSOANG00000002096 #19	SATB2 (ENSOANG00000039784) #22	PLCL1 (ENSOANG00000044001) #23	BOLL (ENSOANG00000019928) #24	RFTN2 (ENSOANG00000020014) #26	MOB4 (ENSOANG00000044127)	ENSOANG00000008195	ENSOANG00000010415 ##27	HSPD1 (ENSOANG00000010414) ##28	COQ10B (ENSOANG00000043506) #29	SF3B1 (ENSOANG00000045106) #30	ANKRD44 (ENSOANG00000040430)	PGAP1 (ENSOANG00000038233)	GTF3C3 (ENSOANG00000043590)	ENSOANG00000050849	HECW2 (ENSOANG00000042120)	STK17B (ENSOANG00000047876)
Sauria	ANCESTRAL SPECIES	32	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a.r #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Emydidae	ANCESTRAL SPECIES	4	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a.q #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Three-toed box turtle	MODERN SPECIES	25	NDUFB3 (ENSTMTG00000009826)	HYCC2 (ENSTMTG00000009797)	ORC2 (ENSTMTG00000009760)	NIF3L1 (ENSTMTG00000009742)	PPIL3 (ENSTMTG00000009721)	CLK1 (ENSTMTG00000009691)	BZW1 (ENSTMTG00000009663)	ENSTMTG00000009541 #12	ENSTMTG00000009481 #12	KCTD18 (ENSTMTG00000009452) #15	SPATS2L (ENSTMTG00000009400) #16	MAIP1 (ENSTMTG00000009374) #17	TYW5 (ENSTMTG00000009344) #18	C2orf69 (ENSTMTG00000009340) #19	FTCDNL1 (ENSTMTG00000009322) #20	SATB2 (ENSTMTG00000009198) #22	PLCL1 (ENSTMTG00000009159) #23	ENSTMTG00000009149	BOLL (ENSTMTG00000009098) #24	RFTN2 (ENSTMTG00000009012) #26	MOB4 (ENSTMTG00000008969)	HSPE1 (ENSTMTG00000008952) ##27	HSPD1 (ENSTMTG00000008938) ##28	COQ10B (ENSTMTG00000008923) #29	SF3B1 (ENSTMTG00000008886) #30	ANKRD44 (ENSTMTG00000006527)	PGAP1 (ENSTMTG00000006286)	GTF3C3 (ENSTMTG00000006246)	CCDC150 (ENSTMTG00000006052)	HECW2 (ENSTMTG00000005911)	STK17B (ENSTMTG00000005873)
painted turtle	MODERN SPECIES	2	NDUFB3 (ENSCPBG00000011726)	HYCC2 (ENSCPBG00000011729)	ORC2 (ENSCPBG00000011736)	NIF3L1 (ENSCPBG00000011743)	PPIL3 (ENSCPBG00000011745)	CLK1 (ENSCPBG00000011747)	BZW1 (ENSCPBG00000011755)	ENSCPBG00000011762 #12	ENSCPBG00000011787 #12	KCTD18 (ENSCPBG00000011796) #15	SPATS2L (ENSCPBG00000011805) #16	MAIP1 (ENSCPBG00000011829) #17	TYW5 (ENSCPBG00000011833) #18	C2orf69 (ENSCPBG00000011840) #19	FTCDNL1 (ENSCPBG00000011843) #20	ENSCPBG00000011848 #22
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00530000064234.o #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00960000192086	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a.r #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Goode s thornscrub tortoise	MODERN SPECIES	2	HYCC2 (ENSGEVG00005013408)	ORC2 (ENSGEVG00005013508)	NIF3L1 (ENSGEVG00005013708)	PPIL3 (ENSGEVG00005013737)	CLK1 (ENSGEVG00005013766)	BZW1 (ENSGEVG00005013813)	ENSGEVG00005013897 #12	ENSGEVG00005014463 #12	KCTD18 (ENSGEVG00005014582) #15	SPATS2L (ENSGEVG00005014623) #16	MAIP1 (ENSGEVG00005014681) #17	TYW5 (ENSGEVG00005014741) #18	C2orf69 (ENSGEVG00005014762) #19	ENSGEVG00005014793	FTCDNL1 (ENSGEVG00005014851) #20	SATB2 (ENSGEVG00005014931) #22	PLCL1 (ENSGEVG00005015176) #23	ENSGEVG00005015268	BOLL (ENSGEVG00005015320) #24	RFTN2 (ENSGEVG00005015347) #26	MOB4 (ENSGEVG00005015382)	ENSGEVG00005015406 ##27	HSPD1 (ENSGEVG00005015419) ##28	COQ10B (ENSGEVG00005015431) #29	SF3B1 (ENSGEVG00005015452) #30	ANKRD44 (ENSGEVG00005015491)	PGAP1 (ENSGEVG00005009499)	GTF3C3 (ENSGEVG00005010993)	CCDC150 (ENSGEVG00005011659)	HECW2 (ENSGEVG00005011769)	STK17B (ENSGEVG00005012035)
Abingdon island giant tortoise	MODERN SPECIES	1768											MAIP1 (ENSCABG00000002848) #17	TYW5 (ENSCABG00000002845) #18	C2orf69 (ENSCABG00000002844) #19	ENSCABG00000002842	FTCDNL1 (ENSCABG00000002840) #20	SATB2 (ENSCABG00000002838) #22	PLCL1 (ENSCABG00000002834) #23
Chinese turtle	MODERN SPECIES	677	HYCC2 (ENSPSIG00000004753)	ORC2 (ENSPSIG00000004159)	NIF3L1 (ENSPSIG00000004085)	PPIL3 (ENSPSIG00000003967)	CLK1 (ENSPSIG00000003762)	BZW1 (ENSPSIG00000003613)	ENSPSIG00000003574 #12	ENSPSIG00000003565 #12	ENSPSIG00000003550	ENSPSIG00000018142 #12	ENSPSIG00000018140 #14	KCTD18 (ENSPSIG00000018125) #15	ENSPSIG00000018117 #16	TYW5 (ENSPSIG00000018111) #18	C2orf69 (ENSPSIG00000001193) #19	SATB2 (ENSPSIG00000018044) #22	PLCL1 (ENSPSIG00000018022) #23	BOLL (ENSPSIG00000018004) #24	RFTN2 (ENSPSIG00000017989) #26	MOB4 (ENSPSIG00000017978)	HSPE1 (ENSPSIG00000017974) ##27	HSPD1 (ENSPSIG00000017889) ##28	COQ10B (ENSPSIG00000017692) #29	SF3B1 (ENSPSIG00000017222) #30	ANKRD44 (ENSPSIG00000015936)	C2orf66 (ENSPSIG00000015930)	GTF3C3 (ENSPSIG00000015691)	CCDC150 (ENSPSIG00000015196)	HECW2 (ENSPSIG00000013756)	STK17B (ENSPSIG00000013683)	ENSPSIG00000013666
Archosauria	ANCESTRAL SPECIES	6	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Aves	ANCESTRAL SPECIES	8	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Neognathae	ANCESTRAL SPECIES	6	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000160994	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Great tit	MODERN SPECIES	27	ENSPMJG00000018178	CASP10 (ENSPMJG00000018177)	CFLAR (ENSPMJG00000018176)	NDUFB3 (ENSPMJG00000018175)	HYCC2 (ENSPMJG00000018174)	ORC2 (ENSPMJG00000018173)	NIF3L1 (ENSPMJG00000018172)	ENSPMJG00000018171	BZW1 (ENSPMJG00000018170)	AOX1 (ENSPMJG00000004145) #12	ENSPMJG00000004063	SPATS2L (ENSPMJG00000004053) #16	MAIP1 (ENSPMJG00000004020) #17	TYW5 (ENSPMJG00000004013) #18	C2orf69 (ENSPMJG00000004011) #19	SATB2 (ENSPMJG00000004001) #22	PLCL1 (ENSPMJG00000003985) #23	BOLL (ENSPMJG00000003966) #24	RFTN2 (ENSPMJG00000003955) #26	MOB4 (ENSPMJG00000003952)	HSPE1 (ENSPMJG00000003948) ##27	HSPD1 (ENSPMJG00000003936) ##28	COQ10B (ENSPMJG00000003934) #29	SF3B1 (ENSPMJG00000003918) #30	ANKRD44 (ENSPMJG00000003248)	PGAP1 (ENSPMJG00000003000)	GTF3C3 (ENSPMJG00000000637)	HECW2 (ENSPMJG00000000591)	STK17B (ENSPMJG00000000570)	ENSPMJG00000000562	SLC39A10 (ENSPMJG00000000557)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000160994	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D.c	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Flycatcher	MODERN SPECIES	26	CFLAR (ENSFALG00000004136)	NDUFB3 (ENSFALG00000004140)	HYCC2 (ENSFALG00000004144)	ENSFALG00000028144	NIF3L1 (ENSFALG00000024500)	PPIL3 (ENSFALG00000023399)	BZW1 (ENSFALG00000027684)	AOX1 (ENSFALG00000004179) #12	ENSFALG00000025029 #14	KCTD18 (ENSFALG00000004224) #15	SPATS2L (ENSFALG00000004226) #16	MAIP1 (ENSFALG00000026216) #17	TYW5 (ENSFALG00000026401) #18	C2orf69 (ENSFALG00000028312) #19	ENSFALG00000025773	SATB2 (ENSFALG00000004242) #22	PLCL1 (ENSFALG00000004251) #23	BOLL (ENSFALG00000004255) #24	RFTN2 (ENSFALG00000004261) #26	MOB4 (ENSFALG00000004266)	HSPE1 (ENSFALG00000025157) ##27	HSPD1 (ENSFALG00000004272) ##28	COQ10B (ENSFALG00000004277) #29	SF3B1 (ENSFALG00000004281) #30	ENSFALG00000004286	PGAP1 (ENSFALG00000004291)	C2orf66 (ENSFALG00000004295)	GTF3C3 (ENSFALG00000004303)	HECW2 (ENSFALG00000004319)	STK17B (ENSFALG00000004323)	ENSFALG00000004327
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000160994	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D.c	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000160994	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D.c	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Zebra finch	MODERN SPECIES	29	CASP10 (ENSTGUG00000010306)	CFLAR (ENSTGUG00000010309)	NDUFB3 (ENSTGUG00000027597)	HYCC2 (ENSTGUG00000023035)	BZW1 (ENSTGUG00000010398)	ORC2 (ENSTGUG00000010352)	NIF3L1 (ENSTGUG00000010385)	PPIL3 (ENSTGUG00000010395)	AOX1 (ENSTGUG00000010409) #12	ENSTGUG00000010459 #14	ENSTGUG00000024909 #15	SPATS2L (ENSTGUG00000010462) #16	MAIP1 (ENSTGUG00000010466) #17	TYW5 (ENSTGUG00000010474) #18	C2orf69 (ENSTGUG00000028654) #19	SATB2 (ENSTGUG00000010480) #22	PLCL1 (ENSTGUG00000010492) #23	BOLL (ENSTGUG00000010496) #24	RFTN2 (ENSTGUG00000010512) #26	MOB4 (ENSTGUG00000027293)	HSPE1 (ENSTGUG00000020798) ##27	HSPD1 (ENSTGUG00000010538) ##28	COQ10B (ENSTGUG00000010549) #29	SF3B1 (ENSTGUG00000010553) #30	ANKRD44 (ENSTGUG00000010567)	PGAP1 (ENSTGUG00000010613)	C2orf66 (ENSTGUG00000010629)	GTF3C3 (ENSTGUG00000010631)	HECW2 (ENSTGUG00000010653)	STK17B (ENSTGUG00000010679)	SLC39A10 (ENSTGUG00000010699)
Common canary	MODERN SPECIES	8	ENSSCAG00000002679	CASP10 (ENSSCAG00000002684)	CFLAR (ENSSCAG00000002692)	NDUFB3 (ENSSCAG00000002696)	HYCC2 (ENSSCAG00000002703)	ORC2 (ENSSCAG00000002715)	NIF3L1 (ENSSCAG00000002725)	PPIL3 (ENSSCAG00000002731)	BZW1 (ENSSCAG00000002739)	AOX1 (ENSSCAG00000002748) #12	ENSSCAG00000002760 #14	SPATS2L (ENSSCAG00000002770) #16	MAIP1 (ENSSCAG00000002783) #17	TYW5 (ENSSCAG00000002800) #18	C2orf69 (ENSSCAG00000002803) #19	SATB2 (ENSSCAG00000002810) #22	PLCL1 (ENSSCAG00000002820) #23	BOLL (ENSSCAG00000002826) #24	RFTN2 (ENSSCAG00000002834) #26	MOB4 (ENSSCAG00000002843)	HSPE1 (ENSSCAG00000002849) ##27	HSPD1 (ENSSCAG00000002857) ##28	COQ10B (ENSSCAG00000002862) #29	SF3B1 (ENSSCAG00000002869) #30	ANKRD44 (ENSSCAG00000002900)	PGAP1 (ENSSCAG00000002970)	GTF3C3 (ENSSCAG00000003067)	HECW2 (ENSSCAG00000003082)	STK17B (ENSSCAG00000003100)	ENSSCAG00000003138	SLC39A10 (ENSSCAG00000003118)
Medium ground finch	MODERN SPECIES	1	CASP8 (ENSGFOG00000000120)	ENSGFOG00000000126	CASP10 (ENSGFOG00000000131)	CFLAR (ENSGFOG00000000133)	NDUFB3 (ENSGFOG00000000135)	HYCC2 (ENSGFOG00000000137)	ORC2 (ENSGFOG00000000142)	NIF3L1 (ENSGFOG00000000152)	PPIL3 (ENSGFOG00000000157)	BZW1 (ENSGFOG00000000164)	AOX1 (ENSGFOG00000000189) #12	SPATS2L (ENSGFOG00000000276) #16	MAIP1 (ENSGFOG00000000285) #17	TYW5 (ENSGFOG00000000292) #18	C2orf69 (ENSGFOG00000000297) #19	SATB2 (ENSGFOG00000000304) #22	PLCL1 (ENSGFOG00000000319) #23	BOLL (ENSGFOG00000000330) #24	RFTN2 (ENSGFOG00000000339) #26	MOB4 (ENSGFOG00000000351)	HSPE1 (ENSGFOG00000000358) ##27	HSPD1 (ENSGFOG00000000363) ##28	COQ10B (ENSGFOG00000000371) #29	SF3B1 (ENSGFOG00000000377) #30	ANKRD44 (ENSGFOG00000000465)	PGAP1 (ENSGFOG00000001016)	C2orf66 (ENSGFOG00000001182)	GTF3C3 (ENSGFOG00000001187)	HECW2 (ENSGFOG00000001246)	STK17B (ENSGFOG00000001718)	ENSGFOG00000001726
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282
Kakapo	MODERN SPECIES	22	CASP10 (ENSSHBG00005021045)	NDUFB3 (ENSSHBG00005021043)	HYCC2 (ENSSHBG00005021042)	ORC2 (ENSSHBG00005021041)	NIF3L1 (ENSSHBG00005021038)	PPIL3 (ENSSHBG00005021034)	CLK1 (ENSSHBG00005021033)	BZW1 (ENSSHBG00005021029)	ENSSHBG00005020922 #12	ENSSHBG00005019636 #12	KCTD18 (ENSSHBG00005019425) #15	SPATS2L (ENSSHBG00005019422) #16	MAIP1 (ENSSHBG00005019417) #17	TYW5 (ENSSHBG00005019414) #18	C2orf69 (ENSSHBG00005019413) #19	SATB2 (ENSSHBG00005019410) #22	PLCL1 (ENSSHBG00005019405) #23	BOLL (ENSSHBG00005019392) #24	RFTN2 (ENSSHBG00005019386) #26	MOB4 (ENSSHBG00005019383)	HSPE1 (ENSSHBG00005019379) ##27	HSPD1 (ENSSHBG00005019373) ##28	COQ10B (ENSSHBG00005019365) #29	SF3B1 (ENSSHBG00005019352) #30	ANKRD44 (ENSSHBG00005018394)	PGAP1 (ENSSHBG00005018304)	GTF3C3 (ENSSHBG00005018293)	ENSSHBG00005018286	ENSSHBG00005018282	HECW2 (ENSSHBG00005018269)	STK17B (ENSSHBG00005018259)
Golden eagle	MODERN SPECIES	22	CFLAR (ENSACCG00020002739)	NDUFB3 (ENSACCG00020002722)	HYCC2 (ENSACCG00020002702)	ORC2 (ENSACCG00020002685)	NIF3L1 (ENSACCG00020002663)	ENSACCG00020002651	CLK1 (ENSACCG00020002621)	BZW1 (ENSACCG00020002605)	ENSACCG00020002563 #12	ENSACCG00020002495 #12	KCTD18 (ENSACCG00020002434) #15	SPATS2L (ENSACCG00020002416) #16	MAIP1 (ENSACCG00020002401) #17	TYW5 (ENSACCG00020002393) #18	C2orf69 (ENSACCG00020002380) #19	SATB2 (ENSACCG00020002371) #22	PLCL1 (ENSACCG00020002350) #23	BOLL (ENSACCG00020002330) #24	RFTN2 (ENSACCG00020002295) #26	MOB4 (ENSACCG00020002267)	HSPE1 (ENSACCG00020002252) ##27	HSPD1 (ENSACCG00020002238) ##28	COQ10B (ENSACCG00020002215) #29	SF3B1 (ENSACCG00020002196) #30	ANKRD44 (ENSACCG00020002129)	PGAP1 (ENSACCG00020002045)	GTF3C3 (ENSACCG00020001980)	ENSACCG00020001942	HECW2 (ENSACCG00020001818)	STK17B (ENSACCG00020001688)	ENSACCG00020001679
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Anatidae	ANCESTRAL SPECIES	10	ENSGT00940000160994	ENSGT00530000064199	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT01090000261922	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282
Pink-footed goose	MODERN SPECIES	18												ENSABRG00000008007	MAIP1 (ENSABRG00000008014) #17	TYW5 (ENSABRG00000008024) #18	C2orf69 (ENSABRG00000008031) #19	SATB2 (ENSABRG00000008058) #22	PLCL1 (ENSABRG00000008112) #23	BOLL (ENSABRG00000008146) #24	RFTN2 (ENSABRG00000008189) #26	MOB4 (ENSABRG00000008210)	ENSABRG00000008219	HSPE1 (ENSABRG00000008221) ##27	HSPD1 (ENSABRG00000008240) ##28	COQ10B (ENSABRG00000008578) #29	SF3B1 (ENSABRG00000008654) #30	ANKRD44 (ENSABRG00000009757)	PGAP1 (ENSABRG00000012531)	GTF3C3 (ENSABRG00000012719)	HECW2 (ENSABRG00000012968)	STK17B (ENSABRG00000013421)	DNAH7 (ENSABRG00000013699)
Duck	MODERN SPECIES	25	CASP8 (ENSAPLG00000014872)	ENSAPLG00000015210	CASP10 (ENSAPLG00000015244)	CFLAR (ENSAPLG00000015311)	NDUFB3 (ENSAPLG00000015508)	HYCC2 (ENSAPLG00000015610)	NIF3L1 (ENSAPLG00000015875)	PPIL3 (ENSAPLG00000015961)	CLK1 (ENSAPLG00000016010)	BZW1 (ENSAPLG00000016194)	AOX1 (ENSAPLG00000008708) #12	SPATS2L (ENSAPLG00000008552) #16	MAIP1 (ENSAPLG00000008514) #17	TYW5 (ENSAPLG00000008413) #18	C2orf69 (ENSAPLG00000000922) #19	SATB2 (ENSAPLG00000008131) #22	PLCL1 (ENSAPLG00000006530) #23	BOLL (ENSAPLG00000006193) #24	RFTN2 (ENSAPLG00000005755) #26	MOB4 (ENSAPLG00000019077)	SF3B1 (ENSAPLG00000003993) #30	ANKRD44 (ENSAPLG00000002803)	PGAP1 (ENSAPLG00000001884)	GTF3C3 (ENSAPLG00000016020)	ENSAPLG00000015999	HECW2 (ENSAPLG00000015383)	STK17B (ENSAPLG00000015076)	ENSAPLG00000022933	ENSAPLG00000026608	ENSAPLG00000015074	ENSAPLG00000013720
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b.j.a #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000161744
Chicken	MODERN SPECIES	36	NDUFB3 (ENSGALG00010024869)	HYCC2 (ENSGALG00010024845)	ORC2 (ENSGALG00010024830)	NIF3L1 (ENSGALG00010024811)	PPIL3 (ENSGALG00010024807)	CLK1 (ENSGALG00010024803)	BZW1 (ENSGALG00010024792)	AOX2 (ENSGALG00010024771) #12	AOX1 (ENSGALG00010024731) #12	ENSGALG00010024213 #14	KCTD18 (ENSGALG00010024207) #15	SPATS2L (ENSGALG00010024075) #16	MAIP1 (ENSGALG00010024020) #17	TYW5 (ENSGALG00010023968) #18	C2orf69 (ENSGALG00010023884) #19	SATB2 (ENSGALG00010023831) #22	PLCL1 (ENSGALG00010015218) #23	BOLL (ENSGALG00010015152) #24	RFTN2 (ENSGALG00010015133) #26	MOB4 (ENSGALG00010015100)	HSPE1 (ENSGALG00010015092) ##27	HSPD1 (ENSGALG00010015069) ##28	COQ10B (ENSGALG00010015043) #29	SF3B1 (ENSGALG00010010748) #30	ANKRD44 (ENSGALG00010010988)	PGAP1 (ENSGALG00010010973)	C7H2ORF66 (ENSGALG00010010961)	GTF3C3 (ENSGALG00010010955)	HECW2 (ENSGALG00010010928)	STK17B (ENSGALG00010010908)	ENSGALG00010010895
Turkey	MODERN SPECIES	27	HYCC2 (ENSMGAG00000007746)	ORC2 (ENSMGAG00000007673)	NIF3L1 (ENSMGAG00000007653)	PPIL3 (ENSMGAG00000007648)	CLK1 (ENSMGAG00000007598)	BZW1 (ENSMGAG00000007562)	ENSMGAG00000020945 #12	AOX1 (ENSMGAG00000007252) #12	ENSMGAG00000007247 #14	ENSMGAG00000007215 #15	ENSMGAG00000021622 #15	SPATS2L (ENSMGAG00000007229) #16	MAIP1 (ENSMGAG00000007211) #17	TYW5 (ENSMGAG00000007194) #18	C2orf69 (ENSMGAG00000007191) #19	SATB2 (ENSMGAG00000007173) #22	ENSMGAG00000007167 #23	BOLL (ENSMGAG00000020859) #24	RFTN2 (ENSMGAG00000007142) #26	MOB4 (ENSMGAG00000007119)	HSPE1 (ENSMGAG00000007107) ##27	HSPD1 (ENSMGAG00000007073) ##28	COQ10B (ENSMGAG00000007063) #29	SF3B1 (ENSMGAG00000007017) #30	ANKRD44 (ENSMGAG00000006933)	PGAP1 (ENSMGAG00000006871)	C2orf66 (ENSMGAG00000006869)	GTF3C3 (ENSMGAG00000006840)	HECW2 (ENSMGAG00000006790)	STK17B (ENSMGAG00000016466)	ENSMGAG00000006729
Japanese quail	MODERN SPECIES	25	ENSCJPG00005015243	CFLAR (ENSCJPG00005015242)	NDUFB3 (ENSCJPG00005015241)	HYCC2 (ENSCJPG00005015237)	ORC2 (ENSCJPG00005015236)	PPIL3 (ENSCJPG00005015235)	NIF3L1 (ENSCJPG00005015111)	CLK1 (ENSCJPG00005015110)	BZW1 (ENSCJPG00005015109)	AOX1 (ENSCJPG00005014163) #12	KCTD18 (ENSCJPG00005014162) #15	SPATS2L (ENSCJPG00005014161) #16	ENSCJPG00005014159 #17	TYW5 (ENSCJPG00005014158) #18	C2orf69 (ENSCJPG00005014157) #19	SATB2 (ENSCJPG00005014156) #22	PLCL1 (ENSCJPG00005014151) #23	BOLL (ENSCJPG00005014150) #24	RFTN2 (ENSCJPG00005014149) #26	MOB4 (ENSCJPG00005014148)	ENSCJPG00005014146	COL6A3 (ENSCJPG00005014145)	MLPH (ENSCJPG00005014101)	PRLH (ENSCJPG00005014089)	RAB17 (ENSCJPG00005014087)	LRRFIP1 (ENSCJPG00005014059)	RAMP1 (ENSCJPG00005014050)	UBE2F (ENSCJPG00005014047)	ENSCJPG00005014041	ENSCJPG00005014038	MREG (ENSCJPG00005014036)
African ostrich	MODERN SPECIES	190														TYW5 (ENSSCUG00000001155) #18	C2orf69 (ENSSCUG00000001156) #19	SATB2 (ENSSCUG00000001157) #22	PLCL1 (ENSSCUG00000001166) #23	BOLL (ENSSCUG00000001167) #24	RFTN2 (ENSSCUG00000001170) #26	MOB4 (ENSSCUG00000001173)	HSPE1 (ENSSCUG00000001176) ##27	HSPD1 (ENSSCUG00000001178) ##28	COQ10B (ENSSCUG00000001180) #29	SF3B1 (ENSSCUG00000001181) #30	ANKRD44 (ENSSCUG00000001187)	PGAP1 (ENSSCUG00000001197)	C2orf66 (ENSSCUG00000001199)	GTF3C3 (ENSSCUG00000001201)	CCDC150 (ENSSCUG00000001205)	HECW2 (ENSSCUG00000001213)	STK17B (ENSSCUG00000001218)
Australian saltwater crocodile	MODERN SPECIES	66	ORC2 (ENSCPRG00005008409)	NIF3L1 (ENSCPRG00005008503)	PPIL3 (ENSCPRG00005008579)	CLK1 (ENSCPRG00005008601)	BZW1 (ENSCPRG00005008656)	ENSCPRG00005008919 #12	ENSCPRG00005009153 #12	ENSCPRG00005009165 #12	ENSCPRG00005009184 #12	ENSCPRG00005009193 #12	KCTD18 (ENSCPRG00005009197) #15	SPATS2L (ENSCPRG00005009201) #16	TYW5 (ENSCPRG00005009213) #18	C2orf69 (ENSCPRG00005009215) #19	FTCDNL1 (ENSCPRG00005009218) #20	SATB2 (ENSCPRG00005009227) #22	ENSCPRG00005009240	PLCL1 (ENSCPRG00005009250) #23	BOLL (ENSCPRG00005009258) #24	RFTN2 (ENSCPRG00005009261) #26	MOB4 (ENSCPRG00005009263)	ENSCPRG00005009267 ##27	HSPD1 (ENSCPRG00005009268) ##28	COQ10B (ENSCPRG00005009291) #29	SF3B1 (ENSCPRG00005009298) #30	ANKRD44 (ENSCPRG00005009315)	PGAP1 (ENSCPRG00005009330)	GTF3C3 (ENSCPRG00005009426)	CCDC150 (ENSCPRG00005009675)	HECW2 (ENSCPRG00005009692)	STK17B (ENSCPRG00005009733)
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b #14	ENSGT00390000004840	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Episquamata	ANCESTRAL SPECIES		ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b #14	ENSGT00390000004840	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466
Laterata	ANCESTRAL SPECIES	42	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT01030000235401	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285
Common wall lizard	MODERN SPECIES		ORC2 (ENSPMRG00000002871)	NIF3L1 (ENSPMRG00000002889)	PPIL3 (ENSPMRG00000002900)	CLK1 (ENSPMRG00000002909)	BZW1 (ENSPMRG00000002917)	ENSPMRG00000003375 #12	ENSPMRG00000005111	ENSPMRG00000005124 #12	KCTD18 (ENSPMRG00000005144) #15	SPATS2L (ENSPMRG00000005149) #16	ENSPMRG00000005158	MAIP1 (ENSPMRG00000005161) #17	TYW5 (ENSPMRG00000005165) #18	C2orf69 (ENSPMRG00000005171) #19	FTCDNL1 (ENSPMRG00000005176) #20	SATB2 (ENSPMRG00000005180) #22	ENSPMRG00000005184	PLCL1 (ENSPMRG00000005188) #23	BOLL (ENSPMRG00000005191) #24	RFTN2 (ENSPMRG00000005194) #26	MOB4 (ENSPMRG00000005201)	ENSPMRG00000005210 ##27	ENSPMRG00000005220 ##28	COQ10B (ENSPMRG00000005252) #29	SF3B1 (ENSPMRG00000005261) #30	ANKRD44 (ENSPMRG00000005384)	PGAP1 (ENSPMRG00000006002)	GTF3C3 (ENSPMRG00000006178)	ENSPMRG00000006458	MPP4 (ENSPMRG00000006532)	ALS2 (ENSPMRG00000006747)
Argentine black and white tegu	MODERN SPECIES	12	ORC2 (ENSSMRG00000020017)	NIF3L1 (ENSSMRG00000020018)	PPIL3 (ENSSMRG00000020020)	MKS1 (ENSSMRG00000020026)	ENSSMRG00000020027	CLK1 (ENSSMRG00000020029)	BZW1 (ENSSMRG00000020030)	ENSSMRG00000020046 #12	ENSSMRG00000020241 #12	KCTD18 (ENSSMRG00000020242) #15	SPATS2L (ENSSMRG00000020243) #16	MAIP1 (ENSSMRG00000020245) #17	TYW5 (ENSSMRG00000020247) #18	C2orf69 (ENSSMRG00000020249) #19	FTCDNL1 (ENSSMRG00000020252) #20	SATB2 (ENSSMRG00000020256) #22	ENSSMRG00000020259	PLCL1 (ENSSMRG00000020260) #23	ENSSMRG00000020262	ENSSMRG00000020263 #24	RFTN2 (ENSSMRG00000020265) #26	MOB4 (ENSSMRG00000020267)	HSPE1 (ENSSMRG00000020269) ##27	HSPD1 (ENSSMRG00000020273) ##28	COQ10B (ENSSMRG00000020275) #29	SF3B1 (ENSSMRG00000020276) #30	ANKRD44 (ENSSMRG00000020279)	PGAP1 (ENSSMRG00000020281)	CFLAR (ENSSMRG00000020283)	ENSSMRG00000020284	TRAK2 (ENSSMRG00000020286)
Toxicofera	ANCESTRAL SPECIES		ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00950000183114.a.b.b.c.a #12	ENSGT00940000154107.b #14	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466	ENSGT00940000154014.b.b
Lizard	MODERN SPECIES	957						CREB1 (ENSACAG00000009672)	METTL21A (ENSACAG00000009731)	ENSACAG00000009752	ENSACAG00000040464	ENSACAG00000009794	PLEKHM3 (ENSACAG00000009797)	ENSACAG00000000254	C2orf69 (ENSACAG00000011226) #19	ENSACAG00000034897	ENSACAG00000029096 #20	SATB2 (ENSACAG00000009821) #22
Elapidae	ANCESTRAL SPECIES		ENSGT00530000064199.k	ENSGT00530000064199.l	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466	ENSGT00940000154014.b.b
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES		CFLAR (ENSNNAG00000009607)	NDUFB3 (ENSNNAG00000009702)	HYCC2 (ENSNNAG00000009742)	ORC2 (ENSNNAG00000009852)	NIF3L1 (ENSNNAG00000009910)	ENSNNAG00000009941	CLK1 (ENSNNAG00000009956)	BZW1 (ENSNNAG00000010016)	AOX1 (ENSNNAG00000010279) #12	KCTD18 (ENSNNAG00000014023) #15	SPATS2L (ENSNNAG00000014040) #16	MAIP1 (ENSNNAG00000014058) #17	TYW5 (ENSNNAG00000014077) #18	C2orf69 (ENSNNAG00000006692) #19	ENSNNAG00000006700 #22	ENSNNAG00000006717 #22	PLCL1 (ENSNNAG00000006743) #23	BOLL (ENSNNAG00000006909) #24	RFTN2 (ENSNNAG00000006926) #26	MOB4 (ENSNNAG00000006969)	HSPE1 (ENSNNAG00000006995) ##27	HSPD1 (ENSNNAG00000007012) ##28	COQ10B (ENSNNAG00000007040) #29	SF3B1 (ENSNNAG00000007064) #30	ANKRD44 (ENSNNAG00000007131)	PGAP1 (ENSNNAG00000007275)	GTF3C3 (ENSNNAG00000007525)	CCDC150 (ENSNNAG00000007636)	HECW2 (ENSNNAG00000007893)	STK17B (ENSNNAG00000008143)	ENSNNAG00000008194
Indian cobra	MODERN SPECIES		CASP10 (ENSNNAG00000009584)	CFLAR (ENSNNAG00000009607)	NDUFB3 (ENSNNAG00000009702)	HYCC2 (ENSNNAG00000009742)	ORC2 (ENSNNAG00000009852)	NIF3L1 (ENSNNAG00000009910)	ENSNNAG00000009941	CLK1 (ENSNNAG00000009956)	BZW1 (ENSNNAG00000010016)	AOX1 (ENSNNAG00000010279) #12	KCTD18 (ENSNNAG00000014023) #15	SPATS2L (ENSNNAG00000014040) #16	MAIP1 (ENSNNAG00000014058) #17	TYW5 (ENSNNAG00000014077) #18	C2orf69 (ENSNNAG00000006692) #19	ENSNNAG00000006700 #22	ENSNNAG00000006717 #22	PLCL1 (ENSNNAG00000006743) #23	BOLL (ENSNNAG00000006909) #24	RFTN2 (ENSNNAG00000006926) #26	MOB4 (ENSNNAG00000006969)	HSPE1 (ENSNNAG00000006995) ##27	HSPD1 (ENSNNAG00000007012) ##28	COQ10B (ENSNNAG00000007040) #29	SF3B1 (ENSNNAG00000007064) #30	ANKRD44 (ENSNNAG00000007131)	PGAP1 (ENSNNAG00000007275)	GTF3C3 (ENSNNAG00000007525)	CCDC150 (ENSNNAG00000007636)	HECW2 (ENSNNAG00000007893)	STK17B (ENSNNAG00000008143)
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00530000064199.k	ENSGT00530000064199.l	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.e #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466.g	ENSGT00940000154014.b.b
Blue-lipped sea krait	MODERN SPECIES	579																SATB2 (ENSLLTG00000006991) #22
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00530000064199.k	ENSGT00530000064199.l	ENSGT00390000010316	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000163579	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.c.b #12	ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.n ##27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.e #30	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000167666	ENSGT00940000155466.g	ENSGT00940000154014.b.b
Eastern brown snake	MODERN SPECIES	7	ENSPTXG00000002638	ENSPTXG00000002639	NDUFB3 (ENSPTXG00000002643)	HYCC2 (ENSPTXG00000002649)	ORC2 (ENSPTXG00000002651)	NIF3L1 (ENSPTXG00000002654)	ENSPTXG00000002657	CLK1 (ENSPTXG00000002661)	BZW1 (ENSPTXG00000002667)	AOX1 (ENSPTXG00000002704) #12	KCTD18 (ENSPTXG00000004060) #15	SPATS2L (ENSPTXG00000004073) #16	MAIP1 (ENSPTXG00000004416) #17	TYW5 (ENSPTXG00000004418) #18	C2orf69 (ENSPTXG00000004419) #19	ENSPTXG00000004420 #22	ENSPTXG00000004422	PLCL1 (ENSPTXG00000004423) #23	BOLL (ENSPTXG00000004425) #24	RFTN2 (ENSPTXG00000004427) #26	MOB4 (ENSPTXG00000004429)	HSPE1 (ENSPTXG00000004431) ##27	HSPD1 (ENSPTXG00000004432) ##28	COQ10B (ENSPTXG00000004434) #29	SF3B1 (ENSPTXG00000004437) #30	ANKRD44 (ENSPTXG00000004451)	PGAP1 (ENSPTXG00000006428)	GTF3C3 (ENSPTXG00000006430)	ENSPTXG00000006456	ENSPTXG00000006457	HECW2 (ENSPTXG00000006458)
Mainland tiger snake	MODERN SPECIES	21	ENSNSUG00000013078	ENSNSUG00000013079	NDUFB3 (ENSNSUG00000013082)	HYCC2 (ENSNSUG00000013085)	ORC2 (ENSNSUG00000013192)	NIF3L1 (ENSNSUG00000013193)	ENSNSUG00000013194	CLK1 (ENSNSUG00000013195)	BZW1 (ENSNSUG00000013196)	AOX1 (ENSNSUG00000013197) #12	KCTD18 (ENSNSUG00000013750) #15	SPATS2L (ENSNSUG00000013759) #16	MAIP1 (ENSNSUG00000013760) #17	TYW5 (ENSNSUG00000013761) #18	C2orf69 (ENSNSUG00000013762) #19	SATB2 (ENSNSUG00000013763) #22	PLCL1 (ENSNSUG00000013764) #23	BOLL (ENSNSUG00000013765) #24	RFTN2 (ENSNSUG00000013801) #26	MOB4 (ENSNSUG00000013835)	HSPE1 (ENSNSUG00000013836) ##27	HSPD1 (ENSNSUG00000013837) ##28	COQ10B (ENSNSUG00000013838) #29	SF3B1 (ENSNSUG00000013840) #30	ANKRD44 (ENSNSUG00000013841)	PGAP1 (ENSNSUG00000013842)	GTF3C3 (ENSNSUG00000013843)	ENSNSUG00000013869	HECW2 (ENSNSUG00000013870)	STK17B (ENSNSUG00000013871)	DNAH7 (ENSNSUG00000013876)
tuatara	MODERN SPECIES	1814	ORC2 (ENSSPUG00000003152)	NIF3L1 (ENSSPUG00000003130)	PPIL3 (ENSSPUG00000003113)	CLK1 (ENSSPUG00000003057)	BZW1 (ENSSPUG00000003041)	ENSSPUG00000002295 #12	ENSSPUG00000001860 #12	ENSSPUG00000001654 #12	KCTD18 (ENSSPUG00000001600) #15	ENSSPUG00000001587	SPATS2L (ENSSPUG00000001564) #16	MAIP1 (ENSSPUG00000001474) #17	TYW5 (ENSSPUG00000001453) #18	C2orf69 (ENSSPUG00000001446) #19	FTCDNL1 (ENSSPUG00000001397) #20	SATB2 (ENSSPUG00000001263) #22
Anura	ANCESTRAL SPECIES	303										ENSGT00530000064234 #15	ENSGT00390000001138.b #16	ENSGT00390000004145 #17	ENSGT00940000158493 #18	ENSGT00390000005550 #19	ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00940000158407 #23
Frog	MODERN SPECIES	9	bmpr2 (ENSXETG00000022074)	fam117b (ENSXETG00000022076)	wdr12 (ENSXETG00000022077)	carf (ENSXETG00000031604)	nbeal1 (ENSXETG00000022086)	dnah7 (ENSXETG00000022093)	slc39a10 (ENSXETG00000022134)	aox1 (ENSXETG00000034468) ##12	ENSXETG00000039500 #12	aox1 (ENSXETG00000022155) ##12	spats2l (ENSXETG00000041119) #16	tyw5 (ENSXETG00000031428) #18	maip1 (ENSXETG00000025128) #17	c2orf69 (ENSXETG00000018287) #19	XB5818974 [provisional] (ENSXETG00000018288) #20	satb2 (ENSXETG00000035931) #22	plcl1 (ENSXETG00000032204) #23	ENSXETG00000045773	ENSXETG00000031296	tmem237 (ENSXETG00000027500)	flacc1 (ENSXETG00000035925)	trak2 (ENSXETG00000032904)	casc3 (ENSXETG00000004143)	casp8 (ENSXETG00000032748)	ENSXETG00000041051	resf1 (ENSXETG00000004145)	cflar (ENSXETG00000033867)	bzw1 (ENSXETG00000030733)	orc2 (ENSXETG00000004151)	c9orf64 (ENSXETG00000030274)	c9orf64 (ENSXETG00000004152)
Leishan spiny toad	MODERN SPECIES	10	C9orf64 (ENSLLEG00000021144)	ENSLLEG00000021218	ENSLLEG00000021462	ENSLLEG00000021830 ##12	ENSLLEG00000022457 ##12	ENSLLEG00000022845 ##12	ENSLLEG00000024214 #12	ENSLLEG00000024411 ##12	KCTD18 (ENSLLEG00000024654) #15	ENSLLEG00000024716 #16	ENSLLEG00000024809 #17	TYW5 (ENSLLEG00000024861) #18	C2orf69 (ENSLLEG00000024970) #19	ENSLLEG00000024996 #20	ENSLLEG00000025021	SATB2 (ENSLLEG00000025046) #22	PLCL1 (ENSLLEG00000025184) #23	MAP3K13 (ENSLLEG00000025313)	TMEM41A (ENSLLEG00000025433)	EHHADH (ENSLLEG00000025485)	C3orf70 (ENSLLEG00000025562)	VPS8 (ENSLLEG00000025606)	DBR1 (ENSLLEG00000025945)	ENSLLEG00000026077	ENSLLEG00000026233	ARMC8 (ENSLLEG00000026719)	ENSLLEG00000027635	ADPRH (ENSLLEG00000005739)	ENSLLEG00000005810	LRRC3 (ENSLLEG00000005820)	ENSLLEG00000005849
Coelacanth	MODERN SPECIES	267								ENSLACG00000018397	ENSLACG00000018337	KCTD18 (ENSLACG00000018201) #15	SPATS2L (ENSLACG00000018167) #16	MAIP1 (ENSLACG00000018077) #17	TYW5 (ENSLACG00000018061) #18	C2orf69 (ENSLACG00000018043) #19	ftcdnl1 (ENSLACG00000018033) #20	SATB2 (ENSLACG00000017798) #22	PLCL1 (ENSLACG00000016887) #23	BOLL (ENSLACG00000015867) #24	ENSLACG00000015721	RFTN2 (ENSLACG00000015529) #26	MOB4 (ENSLACG00000015430)	HSPE1 (ENSLACG00000015377) #27	HSPD1 (ENSLACG00000015296) ##28	COQ10B (ENSLACG00000015175) #29	MGAT2 (ENSLACG00000015114)	SF3B1 (ENSLACG00000014832) #30	ENSLACG00000013926	ENSLACG00000013757	PGAP1 (ENSLACG00000013127)	GTF3C3 (ENSLACG00000012329)	HECW2 (ENSLACG00000009094)
Actinopterygii	ANCESTRAL SPECIES	365																ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D
Reedfish	MODERN SPECIES	16	igfbp2b (ENSECRG00000016635)	igfbp5b (ENSECRG00000016668)	ENSECRG00000016695	TNS1 (ENSECRG00000016755)	ENSECRG00000016847	CXCR1 (ENSECRG00000016885)	ENSECRG00000016898	arpc2 (ENSECRG00000016919)	zgc:92380 (ENSECRG00000016969)	ENSECRG00000016988	b3gnt7l (ENSECRG00000017012)	ENSECRG00000017054	lrrc47 (ENSECRG00000017072)	ENSECRG00000017101	ENSECRG00000017125	satb2 (ENSECRG00000017155) #22	glb1l (ENSECRG00000017204)	ENSECRG00000017232	cdk11b (ENSECRG00000017277)	ENSECRG00000017330	ugt1b5 (ENSECRG00000017375)	ENSECRG00000017415	bzw1a (ENSECRG00000017446)	ENSECRG00000017484	ENSECRG00000017512	ENSECRG00000017541	ENSECRG00000017582	mad2l2 (ENSECRG00000017629)	masp2 (ENSECRG00000017707)	LRRFIP1 (ENSECRG00000017765)	DNAH7 (ENSECRG00000017896)
Neopterygii	ANCESTRAL SPECIES	63	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.a.b.a	ENSGT00940000162639	ENSGT00940000159743	ENSGT00390000012547.b	ENSGT00940000165242	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129
Spotted gar	MODERN SPECIES	650	zgc:162396 (ENSLOCG00000004335)	creb1b (ENSLOCG00000004320)	mettl21a (ENSLOCG00000004303)	ccnyl1 (ENSLOCG00000004267)	PLEKHM3 (ENSLOCG00000004251)	idh1 (ENSLOCG00000004227)	ENSLOCG00000004209	ENSLOCG00000004199	armc8 (ENSLOCG00000004183)	dbr1 (ENSLOCG00000004160)	rab5b (ENSLOCG00000004128)	lcmt2 (ENSLOCG00000004108)	crygs1 (ENSLOCG00000004099)	tbccd1 (ENSLOCG00000004084)	dnajb11 (ENSLOCG00000004052)	satb2 (ENSLOCG00000004032) #22	PLCL1 (ENSLOCG00000004019) #23	BOLL (ENSLOCG00000004003) #24	rftn2 (ENSLOCG00000003988) #26	mob4 (ENSLOCG00000003970)	hspe1 (ENSLOCG00000003954) #27	hspd1 (ENSLOCG00000003937) ##28	coq10b (ENSLOCG00000003924) #29	SF3B1 (ENSLOCG00000003899) #30	ENSLOCG00000003887	pikfyve (ENSLOCG00000003875)	ENSLOCG00000003849	ENSLOCG00000003808	si:dkey-57a22.15 (ENSLOCG00000003782)	ENSLOCG00000003772	ENSLOCG00000003713
Osteoglossocephalai	ANCESTRAL SPECIES	157	ENSGT00940000154453.a.b.a.a.a	ENSGT00940000161191.B	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000162639	ENSGT00940000159743	ENSGT00390000012547.b	ENSGT00940000165242	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B #22	ENSGT00940000158407 #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000164501	ENSGT00940000163322.a.b.a.a	ENSGT00940000163148	ENSGT00940000163322.a.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	105	ENSGT00940000178681	ENSGT00940000155235.j	ENSGT00940000155408.n	ENSGT00940000154453.a.b.a.a.a	ENSGT00940000161191.B	ENSGT00940000159743	ENSGT00390000012547.b	ENSGT00940000165242	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096.a	ENSGT00940000162599	ENSGT00940000160342	ENSGT00470000042284	ENSGT00940000155792.a	ENSGT00390000008096.B.c #22	ENSGT00940000158407.a #23	ENSGT00530000063480.a #24	ENSGT00530000063609.a.j #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000163322.b	ENSGT00940000155367.c #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000164501	ENSGT00940000163322.a.b.a.a	ENSGT00940000163148	ENSGT00940000163322.a.a
Asian bonytongue	MODERN SPECIES		ENSSFOG00015030572	KLF7 (ENSSFOG00015023491)	CREB1 (ENSSFOG00015011346)	mettl21a (ENSSFOG00015023473)	ccnyl1 (ENSSFOG00015023466)	ENSSFOG00015023459	PLEKHM3 (ENSSFOG00015023455)	idh1 (ENSSFOG00015023448)	ENSSFOG00015023440	armc8 (ENSSFOG00015023426)	rab5b (ENSSFOG00015032251)	lcmt2 (ENSSFOG00015023406)	crygs1 (ENSSFOG00015023395)	tbccd1 (ENSSFOG00015023390)	dnajb11 (ENSSFOG00015023379)	satb2 (ENSSFOG00015023364) #22	PLCL1 (ENSSFOG00015025704) #23	BOLL (ENSSFOG00015023350) #24	rftn2 (ENSSFOG00015023346) #26	mob4 (ENSSFOG00015023335)	ENSSFOG00015024264	ENSSFOG00015029157	ENSSFOG00015025383	ENSSFOG00015029936	ENSSFOG00015027356	ENSSFOG00015028320	ENSSFOG00015025361	kifc1 (ENSSFOG00015027196)	ENSSFOG00015024578	ENSSFOG00015001076	ENSSFOG00015032252
P. kingsleyae	MODERN SPECIES	8								ENSPKIG00000000220	armc8 (ENSPKIG00000000262)	dbr1 (ENSPKIG00000000310)	rab5b (ENSPKIG00000000335)	lcmt2 (ENSPKIG00000000360)	crygs1 (ENSPKIG00000000390)	tbccd1 (ENSPKIG00000000413)	dnajb11 (ENSPKIG00000000436)	satb2 (ENSPKIG00000000474) #22	PLCL1 (ENSPKIG00000000508) #23	BOLL (ENSPKIG00000000551) #24	rftn2 (ENSPKIG00000000614) #26	mob4 (ENSPKIG00000000644)	hspe1 (ENSPKIG00000000682) #27	hspd1 (ENSPKIG00000000702) ##28	coq10b (ENSPKIG00000000731) #29	SF3B1 (ENSPKIG00000000784) #30	ANKRD44 (ENSPKIG00000000886)	pikfyve (ENSPKIG00000000993)	si:dkey-69o16.5 (ENSPKIG00000001041)	nhej1 (ENSPKIG00000001066)	ENSPKIG00000001095	ENSPKIG00000001119	ENSPKIG00000001155
Osteoglossiformes	ANCESTRAL SPECIES	558																ENSGT00390000008096.B.d #22	ENSGT00940000165586	ENSGT00940000154349	ENSGT00940000159224.d
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015016010	cyyr1 (ENSSFOG00015016068)	ADAMTS1 (ENSSFOG00015027602)	ENSSFOG00015029109	ncam2 (ENSSFOG00015016108)	sona (ENSSFOG00015016148)	DONSON (ENSSFOG00015016192)	ENSSFOG00015025979	ENSSFOG00015016275	RCAN1 (ENSSFOG00015027430)	KCNE1 (ENSSFOG00015029408)	ENSSFOG00015016348	ATP1A1 (ENSSFOG00015009622)	ATP1A1 (ENSSFOG00015016430)	ENSSFOG00015024557	satb2 (ENSSFOG00015026602) #22	si:ch211-93g23.2 (ENSSFOG00015018587)	ube2f (ENSSFOG00015018547)	ramp1 (ENSSFOG00015018531)	ENSSFOG00015018462	ENSSFOG00015025512	ENSSFOG00015023310	ENSSFOG00015027617	ENSSFOG00015024451	ENSSFOG00015029738	ENSSFOG00015029328	MYO1B (ENSSFOG00015017799)	pofut2 (ENSSFOG00015017724)	ENSSFOG00015017681	vwc2l (ENSSFOG00015025867)	IKZF2 (ENSSFOG00015024820)
P. kingsleyae	MODERN SPECIES	233															ENSPKIG00000011499	satb2 (ENSPKIG00000011532) #22	si:ch211-93g23.2 (ENSPKIG00000011610)	rpe (ENSPKIG00000011665)	ENSPKIG00000011711	ENSPKIG00000011721	ZNF654 (ENSPKIG00000011734)	C3orf38 (ENSPKIG00000011752)	EPHA3 (ENSPKIG00000011776)	arl13b (ENSPKIG00000011815)	STX19 (ENSPKIG00000011839)	nsun3 (ENSPKIG00000011846)	EPHA6 (ENSPKIG00000011880)	CLDN14 (ENSPKIG00000011929)	SLC5A7 (ENSPKIG00000011956)	ENSPKIG00000012069	ENSPKIG00000012228
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	61	ENSGT00940000178681	ENSGT00940000155235.k.a	ENSGT00940000155408.o.a	ENSGT00940000154453.a.b.a.a.a	ENSGT00940000162639	ENSGT00940000159743	ENSGT00390000012547.b	ENSGT00940000165242	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Otomorpha	ANCESTRAL SPECIES	105												ENSGT00940000162599	ENSGT00940000160342.e	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00940000167249	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b
Clupeiformes	ANCESTRAL SPECIES	351																ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.e	ENSGT00940000162599	ENSGT00940000156095.m.b	ENSGT00390000006705	ENSGT01030000234607.A.a.a.a.d	ENSGT00940000160383	ENSGT00940000155759.e.a	ENSGT00490000043417	ENSGT00390000001170.b
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000012247	ENSCHAG00000012265	ENSCHAG00000012286	crygmxl1 (ENSCHAG00000012318)	ENSCHAG00000012348	si:dkey-57a22.15 (ENSCHAG00000012373)	crygm6 (ENSCHAG00000012399)	ENSCHAG00000012458	ENSCHAG00000012479	pikfyve (ENSCHAG00000012619)	ANKRD44 (ENSCHAG00000017049)	SF3B1 (ENSCHAG00000019458) #30	coq10b (ENSCHAG00000020124) #29	HSPD1 (ENSCHAG00000020147) ##28	hspe1 (ENSCHAG00000020182) #27	satb2 (ENSCHAG00000020238) #22	PLCL1 (ENSCHAG00000020263) #23	rftn2 (ENSCHAG00000020284) #26	mob4 (ENSCHAG00000020331)	dnajb11 (ENSCHAG00000020348)	tbccd1 (ENSCHAG00000020624)	crygs2 (ENSCHAG00000020631)	lcmt2 (ENSCHAG00000020653)	R3HDM1 (ENSCHAG00000020911)	rab3gap1 (ENSCHAG00000020953)	ENSCHAG00000021132	ENSCHAG00000021185	ccnt2a (ENSCHAG00000021198)	acmsd (ENSCHAG00000021218)	TMEM163 (ENSCHAG00000021288)	ENSCHAG00000021338
Denticle herring	MODERN SPECIES	19	ENSDCDG00000011676	fbxl3a (ENSDCDG00000011668)	CLN5 (ENSDCDG00000011600)	ENSDCDG00000011576	ENSDCDG00000011551	ybx1 (ENSDCDG00000011327)	rftn2 (ENSDCDG00000011293) #26	ccnt2a (ENSDCDG00000011117)	rab3gap1 (ENSDCDG00000011005)	ENSDCDG00000010961	ENSDCDG00000010947	lcmt2 (ENSDCDG00000010935)	crygs2 (ENSDCDG00000010909)	tbccd1 (ENSDCDG00000010891)	dnajb11 (ENSDCDG00000010880)	satb2 (ENSDCDG00000010873) #22	PLCL1 (ENSDCDG00000010869) #23	hspe1 (ENSDCDG00000010770) #27	hspd1 (ENSDCDG00000010654) ##28	coq10b (ENSDCDG00000010623) #29	SF3B1 (ENSDCDG00000010544) #30	ANKRD44 (ENSDCDG00000003573)	ENSDCDG00000003095	ENSDCDG00000003089	ENSDCDG00000003080	ENSDCDG00000003071	ENSDCDG00000003066	ENSDCDG00000003057	ENSDCDG00000003046	ENSDCDG00000003030	ENSDCDG00000003018
Otophysi	ANCESTRAL SPECIES	130	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159415	ENSGT00950000182936.a.a.a	ENSGT00940000164246.C.d.a	ENSGT00940000155116.a	ENSGT00940000166972	ENSGT00940000164201.d	ENSGT00940000161651	ENSGT00940000162722	ENSGT00390000011275	ENSGT00910000144271.C.db.a	ENSGT00390000007467	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000164099.a.a	ENSGT00940000156984.a.b	ENSGT01100000263555.a.a.b.eb	ENSGT00940000156023	ENSGT00940000155015.h
Characiphysae	ANCESTRAL SPECIES	3									ENSGT00940000161651	ENSGT00940000162722	ENSGT00390000011275	ENSGT00910000144271.C.db.a	ENSGT01030000234551.i	ENSGT00390000007467	ENSGT00940000155792.c	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000164099.a.a	ENSGT00940000156984.b.c	ENSGT01100000263555.a.a.b.eb	ENSGT00940000156023	ENSGT00940000155015.h
Channel catfish	MODERN SPECIES	25	cnga4 (ENSIPUG00000012151)	fhip1b (ENSIPUG00000012196)	ENSIPUG00000012279	ENSIPUG00000012286	hpxa (ENSIPUG00000012314)	mxe (ENSIPUG00000012438)	gatd3 (ENSIPUG00000012484)	olig2 (ENSIPUG00000012497)	olig1 (ENSIPUG00000012506)	ercc1 (ENSIPUG00000012529)	ENSIPUG00000012574	ENSIPUG00000012599	ENSIPUG00000012627	rabl3 (ENSIPUG00000012657)	Dnajb11 (ENSIPUG00000012739)	satb2 (ENSIPUG00000012822) #22	plcl1 (ENSIPUG00000012928) #23	RFTN2 (ENSIPUG00000012962) #26	mob4 (ENSIPUG00000012994)	hspe1 (ENSIPUG00000013031) #27	HSPD1 (ENSIPUG00000013094) ##28	coq10b (ENSIPUG00000013141) #29	sf3b1 (ENSIPUG00000013171) #30	ANKRD44 (ENSIPUG00000013301)	pikfyve (ENSIPUG00000013415)	ENSIPUG00000013730	fgf14 (ENSIPUG00000013752)	itgbl1 (ENSIPUG00000013787)	nalcn (ENSIPUG00000013828)	ENSIPUG00000013904	tmtc4 (ENSIPUG00000013937)
Characiphysae_b	ANCESTRAL SPECIES	60									ENSGT00940000161651	ENSGT00940000162722	ENSGT00390000011275	ENSGT00910000144271.C.db.b	ENSGT00910000144271.C.db.a	ENSGT00390000007467	ENSGT00940000155792.c	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000164099.a.a	ENSGT00940000156984.b.c	ENSGT01100000263555.a.a.b.eb	ENSGT00940000156023	ENSGT00940000155015.h
Characoidei	ANCESTRAL SPECIES	1									ENSGT00940000161651	ENSGT00940000162722	ENSGT00390000011275	ENSGT00910000144271.C.db.b	ENSGT00910000144271.C.db.a	ENSGT00390000007467	ENSGT00940000155792.c	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000164099.a.a	ENSGT00940000156984.b.c	ENSGT01100000263555.a.a.b.eb	ENSGT00940000156023	ENSGT00940000155015.h	ENSGT00940000158521
Red-bellied piranha	MODERN SPECIES	121	KCNE2 (ENSPNAG00000000643)	casq2 (ENSPNAG00000000653)	vangl1 (ENSPNAG00000000662)	nhlh2 (ENSPNAG00000008099)	CNGA4 (ENSPNAG00000000668)	fhip1b (ENSPNAG00000008122)	olig2 (ENSPNAG00000008137)	olig1 (ENSPNAG00000000704)	ercc1 (ENSPNAG00000007191)	ENSPNAG00000008149	ENSPNAG00000008153	ENSPNAG00000008156	ENSPNAG00000000729	rabl3 (ENSPNAG00000000748)	dnajb11 (ENSPNAG00000000766)	satb2 (ENSPNAG00000004753) #22	PLCL1 (ENSPNAG00000000792) #23	rftn2 (ENSPNAG00000008235) #26	mob4 (ENSPNAG00000008244)	hspe1 (ENSPNAG00000008255) #27	hspd1 (ENSPNAG00000000839) ##28	coq10b (ENSPNAG00000000841) #29	SF3B1 (ENSPNAG00000008288) #30	ANKRD44 (ENSPNAG00000008324)	pikfyve (ENSPNAG00000008358)	ENSPNAG00000000940
Mexicana tetra	MODERN SPECIES	10						ENSAMXG00000040102	mxe (ENSAMXG00000002138)	gatd3 (ENSAMXG00000038927)	olig2 (ENSAMXG00000033473)	olig1 (ENSAMXG00000026067)	ercc1 (ENSAMXG00000036571)	ENSAMXG00000002169	gzm3 (ENSAMXG00000002176)	rabl3 (ENSAMXG00000038716)	dnajb11 (ENSAMXG00000042634)	satb2 (ENSAMXG00000002186) #22	PLCL1 (ENSAMXG00000002196) #23	rftn2 (ENSAMXG00000002197) #26	mob4 (ENSAMXG00000036359)	hspe1 (ENSAMXG00000002204) #27	hspd1 (ENSAMXG00000002207) ##28	coq10b (ENSAMXG00000002213) #29	SF3B1 (ENSAMXG00000002219) #30	ENSAMXG00000041633	ANKRD44 (ENSAMXG00000002232)	pikfyve (ENSAMXG00000002267)	ENSAMXG00000002269	FGF14 (ENSAMXG00000038135)	itgbl1 (ENSAMXG00000002270)	nalcn (ENSAMXG00000002279)	ENSAMXG00000002297
Electric eel	MODERN SPECIES	578							gatd3 (ENSEEEG00000019320)	olig2 (ENSEEEG00000019319)	olig1 (ENSEEEG00000019318)	ercc1 (ENSEEEG00000019317)	ENSEEEG00000019306	gzm3 (ENSEEEG00000019303)	rabl3 (ENSEEEG00000019301)	dnajb11 (ENSEEEG00000019291)	ENSEEEG00000019289	satb2 (ENSEEEG00000019287) #22	PLCL1 (ENSEEEG00000019286) #23	ENSEEEG00000019285	rftn2 (ENSEEEG00000019284) #26	mob4 (ENSEEEG00000019280)	hspe1 (ENSEEEG00000019271) #27	hspd1 (ENSEEEG00000019252) ##28	coq10b (ENSEEEG00000019244) #29	SF3B1 (ENSEEEG00000019216) #30
Cyprinoidei	ANCESTRAL SPECIES	104	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159415	ENSGT00950000182936.a.a.a	ENSGT00940000164246.C.d.a	ENSGT00940000155116.a	ENSGT00940000166972	ENSGT00940000164201.d	ENSGT00940000161651	ENSGT00940000162722	ENSGT00390000011275	ENSGT00910000144271.C.db.a.b	ENSGT00910000144271.C.db.a.a	ENSGT00390000007467	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b.w.a	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000164099.a.a	ENSGT00940000156984.a.b.a.b	ENSGT01100000263555.a.a.b.eb	ENSGT00940000156023.q.a	ENSGT00940000155015.h	ENSGT00940000156023.q.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	263	ENSGT00390000019377.b.f.a	ENSGT00940000161814.g.a.d.c.b.a.a.a.a	ENSGT00940000162818.c.a.g.a.c	ENSGT00390000012496.a.d.d	ENSGT00940000164480.a.a.b	ENSGT00940000159415	ENSGT00950000182936.a.a.a.c	ENSGT00940000164246.C.d.a.c	ENSGT00940000164201.d.a.b	ENSGT00390000003706.a.a.s.b	ENSGT00940000161651.c	ENSGT00940000162722.b	ENSGT00910000144271.C.db.a.a.b.b	ENSGT00390000007467.i	ENSGT00940000155792.f	ENSGT00390000008096.B.e.a.a #22	ENSGT00940000158407.d #23	ENSGT00530000063609.a.c #26	ENSGT01050000244956.b.w.a.a	ENSGT00390000006350.j #27	ENSGT00390000005727.b.c ##28	ENSGT00940000155367.n #29	ENSGT00390000018393.ab #30	ENSGT00950000182908.D.h	ENSGT00940000156307.b.a	ENSGT00940000164099.a.a.b	ENSGT00940000156984.a.b.a.b.a	ENSGT01100000263555.a.a.b.eb.a	ENSGT00940000156023.q.a	ENSGT00940000158521.d	ENSGT00940000160645.o.m.b
Goldfish	MODERN SPECIES	49	ENSCARG00000056415	ENSCARG00000056426	vangl1 (ENSCARG00000056449)	nhlh2 (ENSCARG00000056473)	ENSCARG00000056484	fhip1b (ENSCARG00000056532)	ENSCARG00000026376	ENSCARG00000026381	hpxa (ENSCARG00000026393)	gatd3 (ENSCARG00000026527)	olig2 (ENSCARG00000026546)	ENSCARG00000026553	ENSCARG00000026559	rabl3 (ENSCARG00000026571)	dnajb11 (ENSCARG00000026615)	satb2 (ENSCARG00000026647) #22	PLCL1 (ENSCARG00000026678) #23	rftn2 (ENSCARG00000026736) #26	mob4 (ENSCARG00000026777)	hspe1 (ENSCARG00000026811) #27	hspd1 (ENSCARG00000026821) ##28	coq10b (ENSCARG00000026842) #29	SF3B1 (ENSCARG00000026882) #30	ANKRD44 (ENSCARG00000027222)	pikfyve (ENSCARG00000032119)	fgf14 (ENSCARG00000033052)	itgbl1 (ENSCARG00000033105)	nalcn (ENSCARG00000033397)	tmtc4 (ENSCARG00000033487)	zic2a (ENSCARG00000033839)	zic5 (ENSCARG00000033850)
Cyprininae_a	ANCESTRAL SPECIES	349	ENSGT00940000161814.g.a.d.c.b.a.a.a.a	ENSGT00940000162818.c.a.g.a.c	ENSGT00390000012496.a.d.d	ENSGT00940000164480.a.a.b	ENSGT00940000159415	ENSGT00950000182936.a.a.a.c	ENSGT00940000164246.C.d.a.c	ENSGT00940000155116.a.c	ENSGT00390000003706.a.a.s.b	ENSGT00940000161651.c	ENSGT00940000162722.b	ENSGT00910000144271.C.db.a.b.b	ENSGT00910000144271.C.db.a.a.b.b	ENSGT00390000007467.i	ENSGT00940000155792.f	ENSGT00390000008096.B.e.a.a #22	ENSGT00940000158407.d #23	ENSGT00530000063609.a.c #26	ENSGT01050000244956.b.w.a.a	ENSGT00390000006350.j #27	ENSGT00390000005727.b.c ##28	ENSGT00940000155367.n #29	ENSGT00390000018393.ab #30	ENSGT00950000182908.D.h	ENSGT00940000156307.b.a
Common carp reference	MODERN SPECIES	46	vangl1 (ENSCCRG00000082261)	nhlh2 (ENSCCRG00000062686)	ENSCCRG00000010691	fhip1b (ENSCCRG00000010687)	ENSCCRG00000010686	ENSCCRG00000053552	gatd3 (ENSCCRG00000059500)	ENSCCRG00000061176	olig1 (ENSCCRG00000070193)	ENSCCRG00000071698	ENSCCRG00000029032	ENSCCRG00000050423	ENSCCRG00000064107	rabl3 (ENSCCRG00000037485)	dnajb11 (ENSCCRG00000057596)	satb2 (ENSCCRG00000019510) #22	PLCL1 (ENSCCRG00000008216) #23	rftn2 (ENSCCRG00000053881) #26	mob4 (ENSCCRG00000046024)	hspe1 (ENSCCRG00000054775) #27	hspd1 (ENSCCRG00000052785) ##28	coq10b (ENSCCRG00000052829) #29	SF3B1 (ENSCCRG00000006506) #30	ANKRD44 (ENSCCRG00000006626)	pikfyve (ENSCCRG00000022396)	ENSCCRG00000071879	FGF14 (ENSCCRG00000056849)	ENSCCRG00000066702	itgbl1 (ENSCCRG00000078257)	nalcn (ENSCCRG00000036987)	ENSCCRG00000036949
Golden-line barbel	MODERN SPECIES	27	vangl1 (ENSSGRG00000052350)	nhlh2 (ENSSGRG00000052349)	CNGA4 (ENSSGRG00000052348)	fhip1b (ENSSGRG00000052347)	ENSSGRG00000052346	ENSSGRG00000052345	ENSSGRG00000052323	gatd3 (ENSSGRG00000052319)	olig2 (ENSSGRG00000052318)	olig1 (ENSSGRG00000052317)	ercc1 (ENSSGRG00000052315)	ENSSGRG00000052308	ENSSGRG00000052307	rabl3 (ENSSGRG00000052306)	dnajb11 (ENSSGRG00000052215)	satb2 (ENSSGRG00000052210) #22	PLCL1 (ENSSGRG00000052208) #23	rftn2 (ENSSGRG00000052207) #26	ENSSGRG00000052206	hspe1 (ENSSGRG00000052205) #27	hspd1 (ENSSGRG00000052120) ##28	coq10b (ENSSGRG00000052114) #29	SF3B1 (ENSSGRG00000052098) #30	ANKRD44 (ENSSGRG00000051805)	pikfyve (ENSSGRG00000051545)	ENSSGRG00000051543	fgf14 (ENSSGRG00000051542)	itgbl1 (ENSSGRG00000051540)	nalcn (ENSSGRG00000051494)	ENSSGRG00000051485	tmtc4 (ENSSGRG00000051475)
Cyprininae	ANCESTRAL SPECIES	16	ENSGT00950000182936.a.a.a.d	ENSGT00940000164246.C.d.a.d	ENSGT00940000155116.a.d	ENSGT00940000166972.o	ENSGT00940000164201.d.a.a	ENSGT00390000003706.a.a.s.a	ENSGT00940000161651.d	ENSGT00940000162722.a	ENSGT00390000011275	ENSGT00910000144271.C.db.a.b.b	ENSGT00910000144271.C.db.a.a.b.a	ENSGT00910000144271.C.db.a.b.a	ENSGT00910000144271.C.db.a.a.a	ENSGT00390000007467.j	ENSGT00940000155792.e	ENSGT00390000008096.B.e.a.b #22	ENSGT00940000158407.c #23	ENSGT00530000063609.a.d #26	ENSGT01050000244956.b.w.a.b	ENSGT00390000006350.i #27	ENSGT00390000005727.b.d ##28	ENSGT00940000155367.m #29	ENSGT00390000018393.`b #30	ENSGT00950000182908.D.g	ENSGT00940000156307.b.b	ENSGT00940000164099.a.a.a	ENSGT00940000156984.a.b.a.b.b	ENSGT01100000263555.a.a.b.eb.b	ENSGT00940000156023.q.b	ENSGT00940000155015.h	ENSGT00940000158521.c
Cyprininae_a	ANCESTRAL SPECIES	31	ENSGT00940000164480.a.a.a	ENSGT00950000182936.a.a.a.d	ENSGT00940000164246.C.d.a.d	ENSGT00940000155116.a.d	ENSGT00940000166972.o	ENSGT00940000164201.d.a.a	ENSGT00390000003706.a.a.s.a	ENSGT00940000161651.d	ENSGT00940000162722.a	ENSGT00390000011275	ENSGT00910000144271.C.db.a.b.a	ENSGT00910000144271.C.db.a.a.a	ENSGT00910000144271.C.db.a.a.b.a	ENSGT00390000007467.j	ENSGT00940000155792.e	ENSGT00390000008096.B.e.a.b #22	ENSGT00940000158407.c #23	ENSGT00530000063609.a.d #26	ENSGT01050000244956.b.w.a.b	ENSGT00390000006350.i #27	ENSGT00390000005727.b.d ##28	ENSGT00940000155367.m #29	ENSGT00390000018393.`b #30	ENSGT00950000182908.D.g	ENSGT00940000156307.b.b	ENSGT00940000164099.a.a.a	ENSGT00940000156984.a.b.a.b.b	ENSGT01100000263555.a.a.b.eb.b	ENSGT00940000156023.q.b	ENSGT00940000158521.c	ENSGT00940000160645.o.m.a
Common carp reference	MODERN SPECIES	41	vangl1 (ENSCCRG00000002485)	nhlh2 (ENSCCRG00000067895)	fhip1b (ENSCCRG00000002501)	hpxa (ENSCCRG00000043255)	ENSCCRG00000063348	ENSCCRG00000055674	ENSCCRG00000026563	ENSCCRG00000078968	gatd3 (ENSCCRG00000069597)	olig2 (ENSCCRG00000051550)	olig1 (ENSCCRG00000080077)	ercc1 (ENSCCRG00000059279)	ENSCCRG00000003371	ENSCCRG00000003444	dnajb11 (ENSCCRG00000067985)	satb2 (ENSCCRG00000018581) #22	PLCL1 (ENSCCRG00000067775) #23	rftn2 (ENSCCRG00000069592) #26	mob4 (ENSCCRG00000067134)	hspe1 (ENSCCRG00000056668) #27	hspd1 (ENSCCRG00000071339) ##28	coq10b (ENSCCRG00000067941) #29	SF3B1 (ENSCCRG00000057425) #30	ANKRD44 (ENSCCRG00000010049)	pikfyve (ENSCCRG00000021864)	ENSCCRG00000062540	fgf14 (ENSCCRG00000062852)	itgbl1 (ENSCCRG00000069430)	NALCN (ENSCCRG00000013523)	TMTC4 (ENSCCRG00000036842)	clybl (ENSCCRG00000058412)
Golden-line barbel	MODERN SPECIES	208	fhip1b (ENSSGRG00000052176)	fhip1b (ENSSGRG00000052177)	ENSSGRG00000052179	ENSSGRG00000052180	hpxa (ENSSGRG00000052181)	ENSSGRG00000052182	gatd3 (ENSSGRG00000052211)	olig2 (ENSSGRG00000052212)	olig1 (ENSSGRG00000052213)	ercc1 (ENSSGRG00000052214)	ENSSGRG00000052216	ENSSGRG00000052217	ENSSGRG00000052218	rabl3 (ENSSGRG00000052219)	dnajb11 (ENSSGRG00000052225)	satb2 (ENSSGRG00000052288) #22	PLCL1 (ENSSGRG00000052291) #23	ENSSGRG00000052293	rftn2 (ENSSGRG00000052294) #26	hspe1 (ENSSGRG00000052295) #27	hspd1 (ENSSGRG00000052305) ##28	coq10b (ENSSGRG00000052358) #29	SF3B1 (ENSSGRG00000052360) #30	ANKRD44 (ENSSGRG00000052450)	pikfyve (ENSSGRG00000052700)	ENSSGRG00000053065
Goldfish	MODERN SPECIES	27	nhlh2 (ENSCARG00000070160)	fhip1b (ENSCARG00000070162)	ENSCARG00000070165	ENSCARG00000070166	hpxa (ENSCARG00000070168)	ENSCARG00000070183	olig2 (ENSCARG00000070211)	olig1 (ENSCARG00000070213)	ENSCARG00000070214	ercc1 (ENSCARG00000070216)	ENSCARG00000070217	gzm3.4 (ENSCARG00000070218)	ENSCARG00000070219	rabl3 (ENSCARG00000070224)	dnajb11 (ENSCARG00000070233)	satb2 (ENSCARG00000070241) #22	PLCL1 (ENSCARG00000070246) #23	rftn2 (ENSCARG00000070249) #26	mob4 (ENSCARG00000070252)	hspe1 (ENSCARG00000023609) #27	hspd1 (ENSCARG00000023635) ##28	coq10b (ENSCARG00000023675) #29	SF3B1 (ENSCARG00000023698) #30	ANKRD44 (ENSCARG00000023826)	pikfyve (ENSCARG00000025700)	ENSCARG00000030598	fgf14 (ENSCARG00000030599)	itgbl1 (ENSCARG00000030640)	NALCN (ENSCARG00000031166)	ENSCARG00000031230	tmtc4 (ENSCARG00000031262)
Zebrafish	MODERN SPECIES	24	fhip1b (ENSDARG00000078188)	ENSDARG00000007077	hpxa (ENSDARG00000012609)	mxe (ENSDARG00000014427)	mxc (ENSDARG00000024789)	gatd3 (ENSDARG00000020618)	olig2 (ENSDARG00000040946)	olig1 (ENSDARG00000040948)	ercc1 (ENSDARG00000031680)	gzm3.4 (ENSDARG00000076814)	gzm3.3 (ENSDARG00000093990)	ENSDARG00000055986	gzm3 (ENSDARG00000078451)	dnajb11 (ENSDARG00000015088)	rabl3 (ENSDARG00000040959)	satb2 (ENSDARG00000061885) #22	PLCL1 (ENSDARG00000067676) #23	rftn2 (ENSDARG00000056078) #26	mob4 (ENSDARG00000056085)	hspe1 (ENSDARG00000056167) #27	hspd1 (ENSDARG00000056160) ##28	ENSDARG00000094145	coq10b (ENSDARG00000056141) #29	SF3B1 (ENSDARG00000056138) #30	ANKRD44 (ENSDARG00000026028)	pikfyve (ENSDARG00000056112)	ENSDARG00000093739	fgf14 (ENSDARG00000040982)	ENSDARG00000079126	itgbl1 (ENSDARG00000040985)	nalcn (ENSDARG00000001835)
Euteleosteomorpha	ANCESTRAL SPECIES	29	ENSGT00940000178681	ENSGT00940000155235.k.a	ENSGT00940000155408.o.a	ENSGT00940000154453.a.b.a.a.a	ENSGT00940000162639	ENSGT00940000159743	ENSGT00390000012547.b	ENSGT00940000165242	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Percomorphaceae	ANCESTRAL SPECIES	47	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Tiger tail seahorse	MODERN SPECIES	140	DGKH (ENSHCOG00000003845)	AKAP11 (ENSHCOG00000003860)	ENSHCOG00000003874	ENSHCOG00000003880	idh1 (ENSHCOG00000003904)	ENSHCOG00000003918	ENSHCOG00000004103	armc8 (ENSHCOG00000004160)	dbr1 (ENSHCOG00000004179)	rab5b (ENSHCOG00000004191)	ENSHCOG00000004196	ENSHCOG00000004226	crygs1 (ENSHCOG00000004229)	tbccd1 (ENSHCOG00000004241)	dnajb11 (ENSHCOG00000004275)	satb2 (ENSHCOG00000004316) #22	PLCL1 (ENSHCOG00000004445) #23
Percomorphaceae_B	ANCESTRAL SPECIES	26	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00390000004840	ENSGT00940000177631	ENSGT00940000177114	ENSGT00940000163322.b
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b
Cyprinodontiformes	ANCESTRAL SPECIES	30	ENSGT00940000163148.a.b.b.a.b.b.b.a	ENSGT00940000163148.a.b.b.a.b.a.c.b.a.a	ENSGT00940000163148.a.b.b.a.b.a.c.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b
Aplocheiloidei	ANCESTRAL SPECIES	133									ENSGT00940000165279.c	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c
Mangrove rivulus	MODERN SPECIES	57	ENSKMAG00000003096	ccdc93 (ENSKMAG00000003155)	si:dkey-251i10.3 (ENSKMAG00000003300)	insig2 (ENSKMAG00000003330)	EN1 (ENSKMAG00000003345)	MARCO (ENSKMAG00000003365)	C1QL2 (ENSKMAG00000003384)	zgc:101851 (ENSKMAG00000003406)	dbi (ENSKMAG00000003441)	ENSKMAG00000003472	ENSKMAG00000003509	ENSKMAG00000003532	crygs1 (ENSKMAG00000003547)	tbccd1 (ENSKMAG00000003562)	dnajb11 (ENSKMAG00000003575)	satb2 (ENSKMAG00000003635) #22	PLCL1 (ENSKMAG00000003696) #23	rftn2 (ENSKMAG00000003710) #26	mob4 (ENSKMAG00000003726)	hspe1 (ENSKMAG00000003769) #27	hspd1 (ENSKMAG00000003822) ##28	coq10b (ENSKMAG00000003984) #29	SF3B1 (ENSKMAG00000004009) #30	ANKRD44 (ENSKMAG00000004075)	ENSKMAG00000004108	ENSKMAG00000004140	rab5b (ENSKMAG00000004161)	sestd1 (ENSKMAG00000004190)	dnajc15 (ENSKMAG00000004259)	ENSKMAG00000004271	ENSKMAG00000004292
Turquoise killifish	MODERN SPECIES	1623	pknox1.1 (ENSNFUG00015016032)	ENSNFUG00015016043	CCDC93 (ENSNFUG00015016164)	si:dkey-251i10.3 (ENSNFUG00015016189)	insig2 (ENSNFUG00015016192)	ENSNFUG00015016196	idh1 (ENSNFUG00015016215)	DGKG (ENSNFUG00015016687)	ENSNFUG00015020391	ETV5A (ENSNFUG00015020396)	ITGB5 (ENSNFUG00015020515)	TNFAIP6 (ENSNFUG00015022242)	crygs1 (ENSNFUG00015022246)	TBCCD1 (ENSNFUG00015022248)	DNAJB11 (ENSNFUG00015022262)	satb2 (ENSNFUG00015022276) #22	ENSNFUG00015004775	rftn2 (ENSNFUG00015004796) #26	MOB4 (ENSNFUG00015004812)	hspe1 (ENSNFUG00015004832) #27	HSPD1 (ENSNFUG00015004867) ##28	COQ10B (ENSNFUG00015004906) #29	SF3B1 (ENSNFUG00015004956) #30	ANKRD44 (ENSNFUG00015005431)	lcmt2 (ENSNFUG00015006724)	rab5b (ENSNFUG00015006734)	DBR1 (ENSNFUG00015006742)	armc8 (ENSNFUG00015006768)	ENSNFUG00015006809	ENSNFUG00015006849	LRCH1 (ENSNFUG00015006874)
Cyprinodontoidei	ANCESTRAL SPECIES	35	ENSGT00940000163148.a.b.b.a.b.b.b.a	ENSGT00940000163148.a.b.b.a.b.a.c.b.a.a	ENSGT00940000163148.a.b.b.a.b.a.c.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000163149.b.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.b.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b	ENSGT00390000013820
Poecilia	ANCESTRAL SPECIES	27	ENSGT00940000163149.b.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.b.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b	ENSGT00390000013820
NAME_6	ANCESTRAL SPECIES	276													ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481.a	ENSGT00510000047481.b	ENSGT00390000003033	ENSGT00940000165242.c
Sailfin molly	MODERN SPECIES	407													crygs1 (ENSPLAG00000001977)	tbccd1 (ENSPLAG00000001982)	dnajb11 (ENSPLAG00000001992)	satb2 (ENSPLAG00000002023) #22	PLCL1 (ENSPLAG00000002036) #23	rftn2 (ENSPLAG00000002045) #26	mob4 (ENSPLAG00000002062)	hspe1 (ENSPLAG00000002082) #27	hspd1 (ENSPLAG00000002100) ##28	coq10b (ENSPLAG00000002109) #29	SF3B1 (ENSPLAG00000002293) #30	ANKRD44 (ENSPLAG00000002344)	lcmt2 (ENSPLAG00000002366)	rab5b (ENSPLAG00000002409)	dbr1 (ENSPLAG00000002421)
Amazon molly	MODERN SPECIES	743													crygs1 (ENSPFOG00000023921)	tbccd1 (ENSPFOG00000000921)	dnajb11 (ENSPFOG00000000820)	satb2 (ENSPFOG00000000642) #22	PLCL1 (ENSPFOG00000000435) #23
Guppy	MODERN SPECIES	450	ENSPREG00000017419	ENSPREG00000017432	ENSPREG00000017457	ENSPREG00000017558	crygm3 (ENSPREG00000017570)	crygs4 (ENSPREG00000017584)	DGKG (ENSPREG00000017604)	etv5a (ENSPREG00000017649)	ENSPREG00000017700	itgb5 (ENSPREG00000017730)	tnfaip6 (ENSPREG00000017771)	rif1 (ENSPREG00000018052)	crygs1 (ENSPREG00000019262)	tbccd1 (ENSPREG00000019272)	dnajb11 (ENSPREG00000019291)	satb2 (ENSPREG00000019334) #22	ENSPREG00000019403 #23	ENSPREG00000019497	ENSPREG00000019507	rftn2 (ENSPREG00000019526) #26	mob4 (ENSPREG00000019579)	hspe1 (ENSPREG00000019607) #27	hspd1 (ENSPREG00000019620) ##28	SF3B1 (ENSPREG00000019652) #30	ANKRD44 (ENSPREG00000019808)	lcmt2 (ENSPREG00000020123)	rab5b (ENSPREG00000020141)	dbr1 (ENSPREG00000020157)	armc8 (ENSPREG00000020189)	ENSPREG00000020257	idh1 (ENSPREG00000020304)
Platyfish	MODERN SPECIES	21	ENSXMAG00000029508	ENSXMAG00000026236	ENSXMAG00000022601	ENSXMAG00000025012	crygm3 (ENSXMAG00000023253)	crygs4 (ENSXMAG00000006461)	DGKG (ENSXMAG00000005254)	etv5a (ENSXMAG00000005286)	ENSXMAG00000029311	itgb5 (ENSXMAG00000005318)	tnfaip6 (ENSXMAG00000003040)	rif1 (ENSXMAG00000000506)	crygs1 (ENSXMAG00000023848)	tbccd1 (ENSXMAG00000015184)	dnajb11 (ENSXMAG00000010342)	satb2 (ENSXMAG00000007412) #22	PLCL1 (ENSXMAG00000007406) #23	ENSXMAG00000028420	rftn2 (ENSXMAG00000007403) #26	mob4 (ENSXMAG00000007395)	hspe1 (ENSXMAG00000005889) #27	hspd1 (ENSXMAG00000005891) ##28	coq10b (ENSXMAG00000028301) #29	SF3B1 (ENSXMAG00000007369) #30	ANKRD44 (ENSXMAG00000007341)	lcmt2 (ENSXMAG00000007328)	rab5b (ENSXMAG00000022199)	dbr1 (ENSXMAG00000007311)	armc8 (ENSXMAG00000007274)	ENSXMAG00000007272	idh1 (ENSXMAG00000007256)
NAME_4	ANCESTRAL SPECIES	163										ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b
Sheepshead minnow	MODERN SPECIES	1768															dnajb11 (ENSCVAG00000010744)	ENSCVAG00000010756 #22
Mummichog	MODERN SPECIES	264										itgb5 (ENSFHEG00000013494)	tnfaip6 (ENSFHEG00000013516)	rif1 (ENSFHEG00000013721)	crygs1 (ENSFHEG00000013785)	tbccd1 (ENSFHEG00000013806)	dnajb11 (ENSFHEG00000013912)	satb2 (ENSFHEG00000013964) #22	PLCL1 (ENSFHEG00000013977) #23	ENSFHEG00000013984	rftn2 (ENSFHEG00000014016) #26	mob4 (ENSFHEG00000014051)	hspe1 (ENSFHEG00000014077) #27	hspd1 (ENSFHEG00000014111) ##28	coq10b (ENSFHEG00000014130) #29	ENSFHEG00000014273	SF3B1 (ENSFHEG00000014333) #30	ENSFHEG00000014343
Oryzias	ANCESTRAL SPECIES	61						ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481.d	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b	ENSGT00940000163322.a.b.a.b
Oryzias_b	ANCESTRAL SPECIES	72				ENSGT00940000154801.p	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481.d	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00390000005727.a.a #28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b
Javanese ricefish	MODERN SPECIES	8	ENSOJAG00000002656	gtdc1 (ENSOJAG00000002753)	zeb2a (ENSOJAG00000002773)	ENSOJAG00000002809	ENSOJAG00000002855	kif5c (ENSOJAG00000002875)	AKAP11 (ENSOJAG00000003063)	ENSOJAG00000003073	idh1 (ENSOJAG00000003097)	ENSOJAG00000003231	armc8 (ENSOJAG00000003372)	rab5b (ENSOJAG00000004045)	lcmt2 (ENSOJAG00000004082)	crygs1 (ENSOJAG00000004187)	tbccd1 (ENSOJAG00000004328)	satb2 (ENSOJAG00000004485) #22	PLCL1 (ENSOJAG00000004658) #23	ENSOJAG00000004685	ENSOJAG00000004721	ENSOJAG00000004746	ENSOJAG00000004770	ENSOJAG00000004816	ENSOJAG00000004866	pnp5b (ENSOJAG00000004883)	KCNJ10 (ENSOJAG00000004904)	ENSOJAG00000004932	ENSOJAG00000004964	kirrel1b (ENSOJAG00000005035)	cadm3 (ENSOJAG00000005224)	sdhc (ENSOJAG00000005251)	atp1a2a (ENSOJAG00000005506)
Indian medaka	MODERN SPECIES	38							ENSOMEG00000019714	armc8 (ENSOMEG00000019687)	dbr1 (ENSOMEG00000000857)	rab5b (ENSOMEG00000019618)	lcmt2 (ENSOMEG00000019591)	ENSOMEG00000019543	crygs1 (ENSOMEG00000019535)	tbccd1 (ENSOMEG00000019509)	dnajb11 (ENSOMEG00000019480)	satb2 (ENSOMEG00000019458) #22	ENSOMEG00000019415	PLCL1 (ENSOMEG00000019398) #23	rftn2 (ENSOMEG00000019362) #26	mob4 (ENSOMEG00000019328)	hspe1 (ENSOMEG00000019298) #27	hspd1 (ENSOMEG00000019279) ##28	coq10b (ENSOMEG00000019251) #29	SF3B1 (ENSOMEG00000019231) #30	ENSOMEG00000019166	pikfyve (ENSOMEG00000018954)	ENSOMEG00000018804	ENSOMEG00000018792	ENSOMEG00000018785	crygm7 (ENSOMEG00000018773)	ENSOMEG00000018762
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00390000004840	ENSGT00940000177631	ENSGT00940000177114	ENSGT00940000163322.b
Cichlidae	ANCESTRAL SPECIES	50								ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00390000004840	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	30							ENSGT01090000259987.a.a.a.p	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.i	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00390000004840	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	37							ENSGT01090000259987.a.a.a.p	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.i	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b
Lyretail cichlid	MODERN SPECIES	437			ENSNBRG00000016581	ENSNBRG00000016548	ENSNBRG00000016530	ENSNBRG00000016512	ENSNBRG00000016464	ENSNBRG00000016422	armc8 (ENSNBRG00000016351)	dbr1 (ENSNBRG00000016318)	rab5b (ENSNBRG00000016303)	lcmt2 (ENSNBRG00000016212)	CRYGS (ENSNBRG00000016195)	tbccd1 (ENSNBRG00000016150)	dnajb11 (ENSNBRG00000016112)	satb2 (ENSNBRG00000016075) #22	ENSNBRG00000016063	PLCL1 (ENSNBRG00000016030) #23	ENSNBRG00000016018	rftn2 (ENSNBRG00000015991) #26	mob4 (ENSNBRG00000015960)	hspe1 (ENSNBRG00000015941) #27	hspd1 (ENSNBRG00000015906) ##28	coq10b (ENSNBRG00000015878) #29	SF3B1 (ENSNBRG00000015816) #30	ANKRD44 (ENSNBRG00000015786)	ENSNBRG00000015765	pikfyve (ENSNBRG00000015671)	ENSNBRG00000015641	ENSNBRG00000015632	ENSNBRG00000015617
Haplochromini	ANCESTRAL SPECIES	46						ENSGT01030000234575.c.a.a.a.a.a.b.a.b.a.j.b.a.a.a.a	ENSGT01090000259987.a.a.a.p	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.i	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b
Burton s mouthbrooder	MODERN SPECIES	425					ENSHBUG00000008505	ENSHBUG00000008417	ENSHBUG00000008391	ENSHBUG00000008358	armc8 (ENSHBUG00000008340)	dbr1 (ENSHBUG00000000882)	rab5b (ENSHBUG00000008151)	lcmt2 (ENSHBUG00000008117)	CRYGS (ENSHBUG00000008099)	tbccd1 (ENSHBUG00000008079)	dnajb11 (ENSHBUG00000008063)	satb2 (ENSHBUG00000007998) #22	PLCL1 (ENSHBUG00000007928) #23	ENSHBUG00000007917	rftn2 (ENSHBUG00000007894) #26	mob4 (ENSHBUG00000007860)	hspe1 (ENSHBUG00000007801) #27	hspd1 (ENSHBUG00000007775) ##28	coq10b (ENSHBUG00000007732) #29	SF3B1 (ENSHBUG00000007705) #30	ANKRD44 (ENSHBUG00000007627)	pikfyve (ENSHBUG00000007601)	ENSHBUG00000007496	ENSHBUG00000007480	crygm7 (ENSHBUG00000007470)	crygs4 (ENSHBUG00000007468)	crygm6 (ENSHBUG00000007460)
Haplochromini_A	ANCESTRAL SPECIES	51						ENSGT01030000234575.c.a.a.a.a.a.b.a.b.a.j.b.a.a.a.a	ENSGT01090000259987.a.a.a.p	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.i	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b
Haplochromini_B	ANCESTRAL SPECIES	36						ENSGT01030000234575.c.a.a.a.a.a.b.a.b.a.j.b.a.a.a.a	ENSGT01090000259987.a.a.a.p	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.i	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b	ENSGT00940000163322.a.b.a.b
Eastern happy	MODERN SPECIES	7	ENSACLG00000024562	ENSACLG00000024551	ENSACLG00000024525	ENSACLG00000024513	ENSACLG00000024485	sfxn5b (ENSACLG00000024430)	smyd5 (ENSACLG00000024339)	ENSACLG00000024331	armc8 (ENSACLG00000024075)	dbr1 (ENSACLG00000024027)	rab5b (ENSACLG00000023975)	lcmt2 (ENSACLG00000023935)	CRYGS (ENSACLG00000023925)	tbccd1 (ENSACLG00000023918)	dnajb11 (ENSACLG00000023866)	satb2 (ENSACLG00000023792) #22	ENSACLG00000023780	PLCL1 (ENSACLG00000023775) #23	rftn2 (ENSACLG00000023726) #26	mob4 (ENSACLG00000023673)	hspe1 (ENSACLG00000023654) #27	hspd1 (ENSACLG00000023632) ##28	coq10b (ENSACLG00000023623) #29	SF3B1 (ENSACLG00000023470) #30	ANKRD44 (ENSACLG00000023418)	pikfyve (ENSACLG00000023219)	ENSACLG00000023197	ENSACLG00000023191	crygm7 (ENSACLG00000023181)	ENSACLG00000023175	crygm6 (ENSACLG00000023140)
Zebra mbuna	MODERN SPECIES	1098	sestd1 (ENSMZEG00005021389)	dnajc15 (ENSMZEG00005021379)	ENSMZEG00005021376	ENSMZEG00005021374	ENSMZEG00005021370	ENSMZEG00005021368	ENSMZEG00005021358	ENSMZEG00005021353	armc8 (ENSMZEG00005021343)	dbr1 (ENSMZEG00005021338)	rab5b (ENSMZEG00005021336)	lcmt2 (ENSMZEG00005021330)	crygs1 (ENSMZEG00005021328)	tbccd1 (ENSMZEG00005021325)	dnajb11 (ENSMZEG00005021318)	satb2 (ENSMZEG00005021309) #22	PLCL1 (ENSMZEG00005021302) #23	rftn2 (ENSMZEG00005021297) #26	mob4 (ENSMZEG00005021290)	hspe1 (ENSMZEG00005021282) #27	hspd1 (ENSMZEG00005021279) ##28	coq10b (ENSMZEG00005021274) #29	SF3B1 (ENSMZEG00005021254) #30	ANKRD44 (ENSMZEG00005021245)	pikfyve (ENSMZEG00005021229)	ENSMZEG00005021219	ENSMZEG00005021215	crygm7 (ENSMZEG00005021212)	ENSMZEG00005021207	crygm6 (ENSMZEG00005021204)	si:dkey-57a22.15 (ENSMZEG00005021200)
P. nyererei	MODERN SPECIES	471							ENSPNYG00000015924	ENSPNYG00000015616	armc8 (ENSPNYG00000015480)	dbr1 (ENSPNYG00000015453)	rab5b (ENSPNYG00000015436)	lcmt2 (ENSPNYG00000015396)	crygs1 (ENSPNYG00000015373)	tbccd1 (ENSPNYG00000015344)	dnajb11 (ENSPNYG00000015315)	satb2 (ENSPNYG00000015279) #22	ENSPNYG00000015258	PLCL1 (ENSPNYG00000015223) #23	ENSPNYG00000015204	rftn2 (ENSPNYG00000015157) #26	mob4 (ENSPNYG00000015121)	hspe1 (ENSPNYG00000015091) #27	hspd1 (ENSPNYG00000015058) ##28	coq10b (ENSPNYG00000015034) #29	SF3B1 (ENSPNYG00000014939) #30	ANKRD44 (ENSPNYG00000014860)	pikfyve (ENSPNYG00000014783)	ENSPNYG00000014739	ENSPNYG00000014724	crygm7 (ENSPNYG00000014710)	crygm6 (ENSPNYG00000014679)
Nile tilapia	MODERN SPECIES	7	slc37a1 (ENSONIG00000017408)	mmadhcb (ENSONIG00000017407)	nmi (ENSONIG00000017404)	UBXN4 (ENSONIG00000017402)	ENSONIG00000039173	ENSONIG00000013816	ENSONIG00000013821	ENSONIG00000013811	armc8 (ENSONIG00000013804)	dbr1 (ENSONIG00000013801)	rab5b (ENSONIG00000013796)	lcmt2 (ENSONIG00000013793)	crygs1 (ENSONIG00000013790)	tbccd1 (ENSONIG00000013786)	dnajb11 (ENSONIG00000013783)	satb2 (ENSONIG00000013780) #22	ENSONIG00000038798	PLCL1 (ENSONIG00000013778) #23	ENSONIG00000027196	rftn2 (ENSONIG00000013777) #26	mob4 (ENSONIG00000013771)	hspe1 (ENSONIG00000013770) #27	hspd1 (ENSONIG00000013762) ##28	coq10b (ENSONIG00000013761) #29	SF3B1 (ENSONIG00000013758) #30	ANKRD44 (ENSONIG00000013753)	pikfyve (ENSONIG00000013744)	ENSONIG00000040392	ENSONIG00000039218	ENSONIG00000013740	crygm7 (ENSONIG00000013739)
Midas cichlid	MODERN SPECIES	158							ENSACIG00000020644	ENSACIG00000020631	armc8 (ENSACIG00000020599)	dbr1 (ENSACIG00000020512)	rab5b (ENSACIG00000020498)	lcmt2 (ENSACIG00000020476)	CRYGS (ENSACIG00000020441)	tbccd1 (ENSACIG00000020387)	dnajb11 (ENSACIG00000020363)	satb2 (ENSACIG00000020346) #22	ENSACIG00000020335	PLCL1 (ENSACIG00000020233) #23	ENSACIG00000020209	rftn2 (ENSACIG00000020172) #26	mob4 (ENSACIG00000020143)	hspe1 (ENSACIG00000020132) #27	hspd1 (ENSACIG00000020111) ##28
Pomacentridae	ANCESTRAL SPECIES	52	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599.f	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22
Bicolor damselfish	MODERN SPECIES	1288									armc8 (ENSSPAG00000016912)	dbr1 (ENSSPAG00000016892)	rab5b (ENSSPAG00000016868)	lcmt2 (ENSSPAG00000016801)	CRYGS (ENSSPAG00000016794)	tbccd1 (ENSSPAG00000016782)	dnajb11 (ENSSPAG00000016756)	satb2 (ENSSPAG00000016697) #22
Pomacentridae_A	ANCESTRAL SPECIES	69	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599.f	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22
Spiny chromis	MODERN SPECIES	1097																satb2 (ENSAPOG00000019586) #22
Amphiprion	ANCESTRAL SPECIES	61	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599.f	ENSGT00940000160342.g.b.a	ENSGT00940000160342.g.b.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22
Clown anemonefish	MODERN SPECIES	1517												lcmt2 (ENSAOCG00000015526)	CRYGS (ENSAOCG00000015456)	tbccd1 (ENSAOCG00000015375)	dnajb11 (ENSAOCG00000015308)	ENSAOCG00000015269 #22	FNBP1 (ENSAOCG00000015245)	ENSAOCG00000015159	COL5A1 (ENSAOCG00000001051)	ENSAOCG00000002433
Orange clownfish	MODERN SPECIES	3	rgcc (ENSAPEG00000021108)	vwa8 (ENSAPEG00000021150)	DGKH (ENSAPEG00000021400)	AKAP11 (ENSAPEG00000021480)	ENSAPEG00000021497	ENSAPEG00000021507	idh1 (ENSAPEG00000021529)	ENSAPEG00000021607	armc8 (ENSAPEG00000021898)	dbr1 (ENSAPEG00000021944)	rab5b (ENSAPEG00000021965)	lcmt2 (ENSAPEG00000022076)	CRYGS (ENSAPEG00000022108)	tbccd1 (ENSAPEG00000022111)	dnajb11 (ENSAPEG00000022169)	satb2 (ENSAPEG00000022191) #22	ENSAPEG00000022244	ENSAPEG00000022263	ENSAPEG00000022279	ENSAPEG00000022305	ENSAPEG00000022338	ENSAPEG00000022401	ENSAPEG00000022425	ENSAPEG00000022449	ZMYM2 (ENSAPEG00000022524)	ENSAPEG00000022583	gja3 (ENSAPEG00000022590)	gjb8 (ENSAPEG00000022628)	cryl1 (ENSAPEG00000022660)	ift88 (ENSAPEG00000022715)	il17d (ENSAPEG00000022925)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000159415	ENSGT00950000182936.a.a.a	ENSGT00940000166972	ENSGT00940000162722	ENSGT00940000161651	ENSGT00940000160205	ENSGT00530000063686.a.a	ENSGT00390000015050.`b.a	ENSGT01090000259987.a.a.a.p	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00950000182908.D	ENSGT00390000018393.cb #30	ENSGT00940000155367 #29	ENSGT00390000005727.b ##28	ENSGT00390000006350 #27	ENSGT01050000244956.b	ENSGT00530000063609.a #26	ENSGT00940000158407 #23	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000156552.c.a	ENSGT00390000012204	ENSGT00940000157201	ENSGT01090000259987.b.b.a.b	ENSGT00940000165279.c
Tetraodon	MODERN SPECIES	13	fhip1b (ENSTNIG00000006702)	hpxa (ENSTNIG00000006703)	olig1 (ENSTNIG00000006704)	OLIG2 (ENSTNIG00000000234)	UBXN4 (ENSTNIG00000006705)	ENSTNIG00000006706	mmadhcb (ENSTNIG00000006707)	ENSTNIG00000001077	ENSTNIG00000006708	armc8 (ENSTNIG00000006709)	dbr1 (ENSTNIG00000006710)	rab5b (ENSTNIG00000006711)	lcmt2 (ENSTNIG00000006712)	tbccd1 (ENSTNIG00000006713)	dnajb11 (ENSTNIG00000006714)	satb2 (ENSTNIG00000005271) #22	coq10b (ENSTNIG00000011530) #29	hspd1 (ENSTNIG00000011531) ##28	hspe1 (ENSTNIG00000011532) #27	mob4 (ENSTNIG00000011533)	rftn2 (ENSTNIG00000011534) #26	PLCL1 (ENSTNIG00000011535) #23	pikfyve (ENSTNIG00000011536)	RAPH1 (ENSTNIG00000011537)	rif1 (ENSTNIG00000011538)	tnfaip6 (ENSTNIG00000011539)	itgb5 (ENSTNIG00000011540)	etv5a (ENSTNIG00000011541)	DGKG (ENSTNIG00000011542)	crygs3 (ENSTNIG00000011543)	ENSTNIG00000011544
Fugu	MODERN SPECIES		ENSTRUG00000014828	fhip1b (ENSTRUG00000014870)	hpx (ENSTRUG00000014903)	olig1 (ENSTRUG00000022451)	OLIG2 (ENSTRUG00000029420)	UBXN4 (ENSTRUG00000014954)	ENSTRUG00000014989	mmadhcb (ENSTRUG00000022204)	ITGB2 (ENSTRUG00000015046)	armc8 (ENSTRUG00000015163)	dbr1 (ENSTRUG00000021594)	rab5b (ENSTRUG00000015268)	lcmt2 (ENSTRUG00000015304)	tbccd1 (ENSTRUG00000015315)	dnajb11 (ENSTRUG00000015340)	satb2 (ENSTRUG00000015384) #22	ANKRD44 (ENSTRUG00000015438)	SF3B1 (ENSTRUG00000015534) #30	coq10b (ENSTRUG00000015585) #29	hspd1 (ENSTRUG00000015595) ##28	hspe1 (ENSTRUG00000015632) #27	mob4 (ENSTRUG00000015642)	rftn2 (ENSTRUG00000015655) #26	PLCL1 (ENSTRUG00000015675) #23	pikfyve (ENSTRUG00000022125)	ENSTRUG00000028316	RAPH1 (ENSTRUG00000015785)	rif1 (ENSTRUG00000015808)	tnfaip6 (ENSTRUG00000015828)	itgb5 (ENSTRUG00000015838)	ENSTRUG00000015956
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Ballan wrasse	MODERN SPECIES	106		vwa8 (ENSLBEG00000020789)	ENSLBEG00000020850	DGKH (ENSLBEG00000020942)	AKAP11 (ENSLBEG00000021114)	TNFSF11 (ENSLBEG00000021162)	idh1 (ENSLBEG00000021190)	ENSLBEG00000021227	armc8 (ENSLBEG00000021259)	dbr1 (ENSLBEG00000021307)	rab5b (ENSLBEG00000021323)	lcmt2 (ENSLBEG00000021353)	crygs1 (ENSLBEG00000021397)	tbccd1 (ENSLBEG00000021471)	dnajb11 (ENSLBEG00000021545)	satb2 (ENSLBEG00000021744) #22	PLCL1 (ENSLBEG00000021870) #23	rftn2 (ENSLBEG00000021987) #26	mob4 (ENSLBEG00000022069)	hspe1 (ENSLBEG00000022097) #27	hspd1 (ENSLBEG00000022123) ##28	coq10b (ENSLBEG00000022162) #29	SF3B1 (ENSLBEG00000022208) #30	ANKRD44 (ENSLBEG00000022309)	pikfyve (ENSLBEG00000022401)	ENSLBEG00000022495	ENSLBEG00000022514	ENSLBEG00000022542	crygm7 (ENSLBEG00000022567)	ENSLBEG00000022605	crygm6 (ENSLBEG00000022621)
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Eupecaria_C	ANCESTRAL SPECIES	33	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	37	ENSGT00940000158556	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Large yellow croaker	MODERN SPECIES	490	ENSLCRG00005005761	hars (ENSLCRG00005005707)	mlsl (ENSLCRG00005005688)	naa15a (ENSLCRG00005004868)	ENSLCRG00005004840	ENSLCRG00005004835	idh1 (ENSLCRG00005004740)	ENSLCRG00005004736	armc8 (ENSLCRG00005004198)	dbr1 (ENSLCRG00005004190)	rab5b (ENSLCRG00005004186)	lcmt2 (ENSLCRG00005004178)	crygs1 (ENSLCRG00005004171)	tbccd1 (ENSLCRG00005004168)	dnajb11 (ENSLCRG00005004153)	satb2 (ENSLCRG00005004151) #22	PLCL1 (ENSLCRG00005004145) #23	rftn2 (ENSLCRG00005004140) #26	ENSLCRG00005004139	ENSLCRG00005004136	ENSLCRG00005004131	ckap5 (ENSLCRG00005004119)	TMED6 (ENSLCRG00005004109)	cstpp1 (ENSLCRG00005004106)	ENSLCRG00005004102	ENSLCRG00005004101	FBXO31 (ENSLCRG00005003766)	ENSLCRG00005003753	ENSLCRG00005003750	cat (ENSLCRG00005003727)	syt12 (ENSLCRG00005003721)
European seabass	MODERN SPECIES	5	ENSDLAG00005030852	ENSDLAG00005029378	AKAP11 (ENSDLAG00005026058)	EPSTI1 (ENSDLAG00005033430)	ENSDLAG00005026059	idh1 (ENSDLAG00005026063)	ENSDLAG00005026066	ENSDLAG00005026069	armc8 (ENSDLAG00005026081)	dbr1 (ENSDLAG00005026087)	rab5b (ENSDLAG00005026090)	lcmt2 (ENSDLAG00005026093)	CRYGS (ENSDLAG00005026100)	tbccd1 (ENSDLAG00005026101)	dnajb11 (ENSDLAG00005026104)	satb2 (ENSDLAG00005026110) #22	ENSDLAG00005026115 #23	rftn2 (ENSDLAG00005026118) #26	mob4 (ENSDLAG00005026814)	hspd1 (ENSDLAG00005031667) ##28	coq10b (ENSDLAG00005032413) #29	ENSDLAG00005027239 #30	ANKRD44 (ENSDLAG00005026170)	pikfyve (ENSDLAG00005026286)	ENSDLAG00005030408	ENSDLAG00005028085	ENSDLAG00005034551	ENSDLAG00005026314	crygm6 (ENSDLAG00005026315)	si:dkey-57a22.15 (ENSDLAG00005026312)	zgc:153846 (ENSDLAG00005026317)
Gilthead seabream	MODERN SPECIES	23	vwa8 (ENSSAUG00010023822)	ENSSAUG00010024355	DGKH (ENSSAUG00010024376)	AKAP11 (ENSSAUG00010024645)	ENSSAUG00010024648	ENSSAUG00010024649	idh1 (ENSSAUG00010024665)	ENSSAUG00010024755	armc8 (ENSSAUG00010024769)	dbr1 (ENSSAUG00010024912)	rab5b (ENSSAUG00010024915)	lcmt2 (ENSSAUG00010024917)	CRYGS (ENSSAUG00010024919)	tbccd1 (ENSSAUG00010024920)	dnajb11 (ENSSAUG00010024928)	satb2 (ENSSAUG00010024934) #22	PLCL1 (ENSSAUG00010024936) #23	rftn2 (ENSSAUG00010024938) #26	mob4 (ENSSAUG00010024939)	HSP10 (ENSSAUG00010024941) #27	hspd1 (ENSSAUG00010024953) ##28	coq10b (ENSSAUG00010024956) #29	SF3B1 (ENSSAUG00010024957) #30	ANKRD44 (ENSSAUG00010025041)	pikfyve (ENSSAUG00010026314)	ENSSAUG00010026620	ENSSAUG00010026621	crygm7 (ENSSAUG00010026622)	crygm6 (ENSSAUG00010026623)	si:dkey-57a22.15 (ENSSAUG00010026625)	zgc:153846 (ENSSAUG00010026631)
Perciformes	ANCESTRAL SPECIES	20	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Lumpfish	MODERN SPECIES	13	ENSCLMG00005016713	DGKH (ENSCLMG00005016721)	ENSCLMG00005016727	AKAP11 (ENSCLMG00005016737)	TNFSF11 (ENSCLMG00005016740)	ENSCLMG00005016741	idh1 (ENSCLMG00005016742)	ENSCLMG00005016801	armc8 (ENSCLMG00005016928)	dbr1 (ENSCLMG00005017695)	rab5b (ENSCLMG00005017699)	lcmt2 (ENSCLMG00005017702)	crygs1 (ENSCLMG00005017704)	tbccd1 (ENSCLMG00005017709)	dnajb11 (ENSCLMG00005017718)	satb2 (ENSCLMG00005017720) #22	PLCL1 (ENSCLMG00005017723) #23	rftn2 (ENSCLMG00005017792) #26	mob4 (ENSCLMG00005017793)	ENSCLMG00005017795	lrrc3 (ENSCLMG00005017797)	pcbp3 (ENSCLMG00005017799)	ENSCLMG00005017801	ENSCLMG00005017803	ENSCLMG00005017805	CTDSP1 (ENSCLMG00005017956)	ENSCLMG00005017957	ENSCLMG00005017958	ENSCLMG00005017959	ENSCLMG00005017960	ENSCLMG00005017961
Stickleback	MODERN SPECIES	16	vwa8 (ENSGACG00000009203)	DGKH (ENSGACG00000009197)	AKAP11 (ENSGACG00000009186)	ENSGACG00000009181	ENSGACG00000009174	idh1 (ENSGACG00000009167)	ENSGACG00000009159	ENSGACG00000009156	armc8 (ENSGACG00000009132)	dbr1 (ENSGACG00000009122)	rab5b (ENSGACG00000009102)	lcmt2 (ENSGACG00000009092)	crygs1 (ENSGACG00000009079)	tbccd1 (ENSGACG00000009074)	dnajb11 (ENSGACG00000009047)	satb2 (ENSGACG00000009037) #22	PLCL1 (ENSGACG00000009026) #23	rftn2 (ENSGACG00000009017) #26	mob4 (ENSGACG00000009010)	hspe1 (ENSGACG00000008995) #27	hspd1 (ENSGACG00000008860) ##28	coq10b (ENSGACG00000008855) #29	SF3B1 (ENSGACG00000008839) #30	ANKRD44 (ENSGACG00000008817)	pikfyve (ENSGACG00000008803)	ENSGACG00000008788	crygm7 (ENSGACG00000008785)	ENSGACG00000008781	crygm6 (ENSGACG00000008774)	zgc:153846 (ENSGACG00000008753)	ENSGACG00000008746
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00940000158556	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.b.b
Channel bull blenny	MODERN SPECIES	13	f5 (ENSCGOG00000024588)	rgcc (ENSCGOG00000024602)	vwa8 (ENSCGOG00000024644)	DGKH (ENSCGOG00000024688)	AKAP11 (ENSCGOG00000024694)	TNFSF11 (ENSCGOG00000024695)	idh1 (ENSCGOG00000024696)	ENSCGOG00000024697	armc8 (ENSCGOG00000024702)	dbr1 (ENSCGOG00000024707)	rab5b (ENSCGOG00000002590)	lcmt2 (ENSCGOG00000002606)	crygs1 (ENSCGOG00000002665)	tbccd1 (ENSCGOG00000002892)	dnajb11 (ENSCGOG00000002904)	satb2 (ENSCGOG00000002962) #22	ENSCGOG00000002975	rftn2 (ENSCGOG00000002980) #26	mob4 (ENSCGOG00000003005)	coq10b (ENSCGOG00000003077) #29	hspd1 (ENSCGOG00000003123) ##28	SF3B1 (ENSCGOG00000003380) #30	ANKRD44 (ENSCGOG00000003811)	pikfyve (ENSCGOG00000005018)	ENSCGOG00000006697	ENSCGOG00000006700	ENSCGOG00000006706	ENSCGOG00000006711	crygm6 (ENSCGOG00000006745)	si:dkey-57a22.15 (ENSCGOG00000006753)	zgc:153846 (ENSCGOG00000006772)
Pike perch	MODERN SPECIES	1	rgcc (ENSSLUG00000011843)	vwa8 (ENSSLUG00000011975)	DGKH (ENSSLUG00000014489)	AKAP11 (ENSSLUG00000014887)	ENSSLUG00000014892	idh1 (ENSSLUG00000014916)	ENSSLUG00000015268	ENSSLUG00000015275	armc8 (ENSSLUG00000015447)	dbr1 (ENSSLUG00000017311)	rab5b (ENSSLUG00000017321)	lcmt2 (ENSSLUG00000017329)	CRYGS (ENSSLUG00000017359)	tbccd1 (ENSSLUG00000017361)	dnajb11 (ENSSLUG00000017381)	satb2 (ENSSLUG00000017469) #22	PLCL1 (ENSSLUG00000017499) #23	rftn2 (ENSSLUG00000017554) #26	mob4 (ENSSLUG00000017565)	hspe1 (ENSSLUG00000017575) #27	hspd1 (ENSSLUG00000017583) ##28	ENSSLUG00000017605	coq10b (ENSSLUG00000017612) #29	SF3B1 (ENSSLUG00000017620) #30	ANKRD44 (ENSSLUG00000017677)	pikfyve (ENSSLUG00000018271)	ENSSLUG00000019888	ENSSLUG00000019891	crygm7 (ENSSLUG00000019892)	ENSSLUG00000019896	crygm6 (ENSSLUG00000019898)
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000158556	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00390000004840	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b
Carangaria	ANCESTRAL SPECIES	12	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.h #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.bb.a #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Carangaria_A	ANCESTRAL SPECIES	45	ENSGT00940000158556	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.h #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.bb.a #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000164501.a.b	ENSGT00940000164501.a.a.b.b	ENSGT00940000163322.a.b.a.b
Seriola	ANCESTRAL SPECIES	6	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.a.b.e	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.a.b.f	ENSGT01100000263568.b.a.c.b.b	ENSGT00940000158361	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.h #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.bb.a #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000164501.a.a.b.b	ENSGT00940000163322.a.b.a.b	ENSGT00940000163148.a.b.b.a.a.a
Yellowtail amberjack	MODERN SPECIES	2895	ENSSLDG00000020186	ENSSLDG00000020165	itgav (ENSSLDG00000020113)	AKAP11 (ENSSLDG00000020069)	ENSSLDG00000020053	idh1 (ENSSLDG00000020025)	ENSSLDG00000020000	armc8 (ENSSLDG00000019925)	dbr1 (ENSSLDG00000019891)	rab5b (ENSSLDG00000019873)	ENSSLDG00000019862	lcmt2 (ENSSLDG00000019839)	CRYGS (ENSSLDG00000019817)	tbccd1 (ENSSLDG00000019797)	dnajb11 (ENSSLDG00000019771)	satb2 (ENSSLDG00000019724) #22	PLCL1 (ENSSLDG00000019704) #23	rftn2 (ENSSLDG00000019682) #26	mob4 (ENSSLDG00000019644)	ENSSLDG00000019627	hspe1 (ENSSLDG00000019614) #27	hspd1 (ENSSLDG00000019589) ##28	coq10b (ENSSLDG00000019579) #29	SF3B1 (ENSSLDG00000019495) #30	ANKRD44 (ENSSLDG00000019439)
Greater amberjack	MODERN SPECIES	21	ENSSDUG00000018315	ENSSDUG00000018302	itgav (ENSSDUG00000018160)	ENSSDUG00000018084	AKAP11 (ENSSDUG00000018051)	ENSSDUG00000017996	idh1 (ENSSDUG00000017961)	ENSSDUG00000017952	armc8 (ENSSDUG00000017908)	dbr1 (ENSSDUG00000017849)	rab5b (ENSSDUG00000017822)	lcmt2 (ENSSDUG00000017764)	crygs1 (ENSSDUG00000017704)	tbccd1 (ENSSDUG00000017677)	dnajb11 (ENSSDUG00000017646)	satb2 (ENSSDUG00000017615) #22	PLCL1 (ENSSDUG00000017579) #23	rftn2 (ENSSDUG00000017560) #26	mob4 (ENSSDUG00000017533)	hspe1 (ENSSDUG00000017512) #27	hspd1 (ENSSDUG00000017487) ##28	coq10b (ENSSDUG00000017471) #29	SF3B1 (ENSSDUG00000017422) #30	ANKRD44 (ENSSDUG00000017323)	pikfyve (ENSSDUG00000017211)	ENSSDUG00000017193	ENSSDUG00000017169	crygm7 (ENSSDUG00000017142)	crygm6 (ENSSDUG00000017099)	si:dkey-57a22.15 (ENSSDUG00000017070)	ENSSDUG00000016669
Barramundi perch	MODERN SPECIES	281			vwa8 (ENSLCAG00010009674)	DGKH (ENSLCAG00010008991)	ENSLCAG00010008872	ENSLCAG00010008861	idh1 (ENSLCAG00010008801)	ENSLCAG00010008774	armc8 (ENSLCAG00010008532)	dbr1 (ENSLCAG00010008484)	rab5b (ENSLCAG00010008481)	lcmt2 (ENSLCAG00010008471)	CRYGS (ENSLCAG00010008468)	tbccd1 (ENSLCAG00010008467)	dnajb11 (ENSLCAG00010008457)	satb2 (ENSLCAG00010008438) #22	rftn2 (ENSLCAG00010008404) #26	mob4 (ENSLCAG00010008394)	hspe1 (ENSLCAG00010008372) #27	hspd1 (ENSLCAG00010008343) ##28	coq10b (ENSLCAG00010008330) #29
Pleuronectoidei	ANCESTRAL SPECIES	45	ENSGT00940000158556	ENSGT00390000011709.gb	ENSGT00390000006601.r	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00390000012547.b.r	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00940000177416	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350.h #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00390000004840	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Turbot	MODERN SPECIES	5	ddx3xa (ENSSMAG00000015674)	NYX (ENSSMAG00000015702)	gpr34b (ENSSMAG00000024816)	CASK (ENSSMAG00000015722)	ENSSMAG00000014138	ENSSMAG00000022333	ENSSMAG00000027027	idh1 (ENSSMAG00000014096)	ENSSMAG00000038066	armc8 (ENSSMAG00000016119)	dbr1 (ENSSMAG00000016078)	rab5b (ENSSMAG00000016057)	ENSSMAG00000016033	ENSSMAG00000015967	dnajb11 (ENSSMAG00000015925)	satb2 (ENSSMAG00000015799) #22	ENSSMAG00000032902	PLCL1 (ENSSMAG00000015766) #23	rftn2 (ENSSMAG00000014086) #26	mob4 (ENSSMAG00000014056)	hspd1 (ENSSMAG00000014018) ##28	coq10b (ENSSMAG00000014009) #29	SF3B1 (ENSSMAG00000013977) #30	pikfyve (ENSSMAG00000013739)	ENSSMAG00000013728	crygm7 (ENSSMAG00000013719)	ENSSMAG00000013691	crygm6 (ENSSMAG00000013673)	si:dkey-57a22.15 (ENSSMAG00000028649)	zgc:153846 (ENSSMAG00000027782)	ENSSMAG00000012968
Tongue sole	MODERN SPECIES	7	me3 (ENSCSEG00000004073)	nxpe3 (ENSCSEG00000004065)	tuba8l2 (ENSCSEG00000004061)	ENSCSEG00000004059	rpl24 (ENSCSEG00000004049)	mpc2b (ENSCSEG00000004043)	dcaf6 (ENSCSEG00000004015)	gpr161b (ENSCSEG00000004004)	OTC (ENSCSEG00000003995)	srpx (ENSCSEG00000003992)	SYTL5 (ENSCSEG00000003988)	xk (ENSCSEG00000003969)	rif1 (ENSCSEG00000003945)	tbccd1 (ENSCSEG00000003925)	dnajb11 (ENSCSEG00000003917)	satb2 (ENSCSEG00000003906) #22	PLCL1 (ENSCSEG00000003897) #23	ENSCSEG00000003896	ENSCSEG00000003891 #26	mob4 (ENSCSEG00000003888)	hspe1 (ENSCSEG00000003885) #27	hspd1 (ENSCSEG00000003879) ##28	coq10b (ENSCSEG00000003873) #29	SF3B1 (ENSCSEG00000003860) #30	ANKRD44 (ENSCSEG00000003845)	pikfyve (ENSCSEG00000003825)	ENSCSEG00000003820	crygm7 (ENSCSEG00000003815)	ENSCSEG00000003806	si:dkey-57a22.15 (ENSCSEG00000003791)	ENSCSEG00000003757
Anabantaria	ANCESTRAL SPECIES	26	ENSGT00940000158556	ENSGT00390000011709.gb	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000012547.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00390000004840	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000164501.a.a.b.b
Zig-zag eel	MODERN SPECIES	13	rgcc (ENSMAMG00000012629)	vwa8 (ENSMAMG00000012489)	DGKH (ENSMAMG00000012402)	AKAP11 (ENSMAMG00000012363)	ENSMAMG00000028176	idh1 (ENSMAMG00000012331)	ENSMAMG00000012317	ENSMAMG00000025939	armc8 (ENSMAMG00000012239)	dbr1 (ENSMAMG00000012205)	rab5b (ENSMAMG00000028405)	lcmt2 (ENSMAMG00000012158)	CRYGS (ENSMAMG00000011966)	tbccd1 (ENSMAMG00000011948)	dnajb11 (ENSMAMG00000011906)	satb2 (ENSMAMG00000011861) #22	ENSMAMG00000010504 #23	rftn2 (ENSMAMG00000010459) #26	mob4 (ENSMAMG00000010425)	hspe1 (ENSMAMG00000010406) #27	hspd1 (ENSMAMG00000010371) ##28	coq10b (ENSMAMG00000010364) #29	SF3B1 (ENSMAMG00000010241) #30	ENSMAMG00000028210	ANKRD44 (ENSMAMG00000010159)	pikfyve (ENSMAMG00000010080)	ENSMAMG00000010050	ENSMAMG00000009523	ENSMAMG00000026303	si:dkey-57a22.15 (ENSMAMG00000009386)	ENSMAMG00000027638
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00390000005923	ENSGT00940000155558	ENSGT00940000165507	ENSGT00940000156472.d	ENSGT00940000157043	ENSGT00390000013151.a.a.b	ENSGT00940000160639.b.b	ENSGT00940000165242.c	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT01050000244823.d.b.b.a.a.a.b.b	ENSGT01050000244823.d.b.b.a.a.a.a	ENSGT01050000244823.d.b.b.a.a.b.b.a.a.e	ENSGT01050000244823.d.b.b.a.a.b.a	ENSGT01050000244823.d.b.b.a.a.b.b.a.b	ENSGT01050000244823.d.b.b.a.a.b.b.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393.cb #30	ENSGT00950000182908.D	ENSGT00940000156307.b
Climbing perch	MODERN SPECIES	12	dnajc10 (ENSATEG00000019336)	frzb (ENSATEG00000019360)	dusp19a (ENSATEG00000019381)	ENSATEG00000019366	ENSATEG00000019416	ENSATEG00000019440	ENSATEG00000019469	ENSATEG00000019506	armc8 (ENSATEG00000019587)	dbr1 (ENSATEG00000019673)	rab5b (ENSATEG00000019723)	lcmt2 (ENSATEG00000019746)	CRYGS (ENSATEG00000019760)	tbccd1 (ENSATEG00000019822)	dnajb11 (ENSATEG00000019830)	satb2 (ENSATEG00000019863) #22	ENSATEG00000019919 #23	rftn2 (ENSATEG00000019931) #26	mob4 (ENSATEG00000019942)	ENSATEG00000023122	ENSATEG00000028754	ENSATEG00000020126	ENSATEG00000020039	ENSATEG00000020145	ENSATEG00000026376	ENSATEG00000029619	ENSATEG00000020203	ENSATEG00000028899	hspe1 (ENSATEG00000020349) #27	ENSATEG00000020363	ENSATEG00000020374
Siamese fighting fish	MODERN SPECIES	11	nup35 (ENSBSLG00000022934)	dnajc10 (ENSBSLG00000022959)	frzb (ENSBSLG00000023041)	dusp19a (ENSBSLG00000023060)	ENSBSLG00000023164	sh3bp4 (ENSBSLG00000023851)	arl4cb (ENSBSLG00000023870)	ENSBSLG00000023886	armc8 (ENSBSLG00000023939)	dbr1 (ENSBSLG00000024033)	rab5b (ENSBSLG00000024038)	lcmt2 (ENSBSLG00000024046)	CRYGS (ENSBSLG00000024070)	tbccd1 (ENSBSLG00000024081)	dnajb11 (ENSBSLG00000024092)	satb2 (ENSBSLG00000024117) #22	PLCL1 (ENSBSLG00000024132) #23	rftn2 (ENSBSLG00000024427) #26	mob4 (ENSBSLG00000024479)	ENSBSLG00000024520	ENSBSLG00000024523	ENSBSLG00000024528	ENSBSLG00000024531	ENSBSLG00000024534	ENSBSLG00000024539	ENSBSLG00000024542	ENSBSLG00000024563	ENSBSLG00000024571	ENSBSLG00000024575	ENSBSLG00000024577	ENSBSLG00000024581
Pinecone sodierfish	MODERN SPECIES	13	ENSMMDG00005024958	rgcc (ENSMMDG00005024959)	vwa8 (ENSMMDG00005024960)	DGKH (ENSMMDG00005024961)	ENSMMDG00005024962	TNFSF11 (ENSMMDG00005024963)	idh1 (ENSMMDG00005024964)	ENSMMDG00005025023	armc8 (ENSMMDG00005025024)	dbr1 (ENSMMDG00005025033)	rab5b (ENSMMDG00005025034)	lcmt2 (ENSMMDG00005025035)	CRYGS (ENSMMDG00005025036)	tbccd1 (ENSMMDG00005025037)	dnajb11 (ENSMMDG00005025038)	satb2 (ENSMMDG00005025039) #22	ENSMMDG00005025040	PLCL1 (ENSMMDG00005025041) #23	ENSMMDG00005025042	rftn2 (ENSMMDG00005013675) #26	MOB4 (ENSMMDG00005013679)	hspe1 (ENSMMDG00005013681) #27	hspd1 (ENSMMDG00005013697) ##28	coq10b (ENSMMDG00005013699) #29	SF3B1 (ENSMMDG00005013701) #30	ANKRD44 (ENSMMDG00005014236)	crygm7 (ENSMMDG00005016201)	ENSMMDG00005016203	crygm6 (ENSMMDG00005016207)	zgc:153846 (ENSMMDG00005016209)	ENSMMDG00005016213
Cod	MODERN SPECIES	12	rgcc (ENSGMOG00000003645)	vwa8 (ENSGMOG00000007060)	DGKH (ENSGMOG00000007040)	AKAP11 (ENSGMOG00000032401)	ENSGMOG00000035585	ENSGMOG00000034114	idh1 (ENSGMOG00000006982)	ENSGMOG00000019406	ENSGMOG00000033757	armc8 (ENSGMOG00000006940)	dbr1 (ENSGMOG00000006925)	rab5b (ENSGMOG00000006918)	CRYGS (ENSGMOG00000023223)	ENSGMOG00000006900	dnajb11 (ENSGMOG00000006890)	satb2 (ENSGMOG00000024031) #22	ENSGMOG00000034812 #23	rftn2 (ENSGMOG00000006824) #26	mob4 (ENSGMOG00000006816)	coq10b (ENSGMOG00000034755) #29	hspd1 (ENSGMOG00000006801) ##28	SF3B1 (ENSGMOG00000006773) #30	ANKRD44 (ENSGMOG00000006735)	itgb5 (ENSGMOG00000002791)	ENSGMOG00000025787	ENSGMOG00000029470	ENSGMOG00000002862	ENSGMOG00000002924	ENSGMOG00000003354	ENSGMOG00000035271	ENSGMOG00000025639
Protacanthopterygii	ANCESTRAL SPECIES	18	ENSGT00940000178681	ENSGT00940000155235.k.a	ENSGT00940000155408.o.a	ENSGT00940000154453.a.b.a.a.a	ENSGT00940000162639.a	ENSGT00940000159743	ENSGT00390000012547.b	ENSGT00940000165242.e	ENSGT00390000003033	ENSGT00510000047481	ENSGT00940000166096	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792	ENSGT00390000008096.B.e.a #22	ENSGT00940000158407 #23	ENSGT00530000063609.a #26	ENSGT01050000244956.b	ENSGT00390000006350 #27	ENSGT00390000005727.b ##28	ENSGT00940000155367 #29	ENSGT00390000018393 #30	ENSGT00950000182908.D	ENSGT00940000156307.b	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00940000155408.o.a.e	ENSGT00940000154453.a.b.a.a.a.b	ENSGT00940000161191.B.a	ENSGT00940000159743.c.a	ENSGT00390000012547.b.x.b	ENSGT00940000165242.e.a	ENSGT00390000003033.d	ENSGT00510000047481.f.b	ENSGT00940000166096.h	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.h	ENSGT00390000008096.B.e.a.d #22	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.c #22	ENSGT00940000158407.h #23	ENSGT00530000063609.a.g #26	ENSGT01050000244956.b.u.a	ENSGT00390000005727.b.f ##28	ENSGT00940000155367.e #29	ENSGT00390000018393.eb #30	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT00940000177114	ENSGT00530000063186.b.b.p	ENSGT00940000154695.d.b.b.b.b	ENSGT00940000159224.b.a	ENSGT00940000165586.b	ENSGT00940000155235.k.b.c
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000163794	ENSGT00940000178681.a.a	ENSGT00940000155235.k.a.c	ENSGT00940000155408.o.a.e	ENSGT00940000154453.a.b.a.a.a.b	ENSGT00940000161191.B.a.b	ENSGT00940000159743.c.a	ENSGT00390000012547.b.x.b	ENSGT00940000165242.e.a	ENSGT00390000003033.d	ENSGT00510000047481.f.b	ENSGT00940000166096.h	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.c #22	ENSGT00940000158407.h #23	ENSGT00530000063609.a.g #26	ENSGT01050000244956.b.u.a	ENSGT00390000006350.e #27	ENSGT00390000005727.b.f ##28	ENSGT00940000155367.e #29	ENSGT00390000018393.eb #30	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000156597.a.b.b.a.a.a.a	ENSGT00940000157652.j.b	ENSGT01030000234570.d.a.p.a	ENSGT00530000063186.b.b.p
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000163794	ENSGT00940000178681.a.a	ENSGT00940000155235.k.a.c	ENSGT00940000155408.o.a.e	ENSGT00940000154453.a.b.a.a.a.b	ENSGT00940000161191.B.a.b	ENSGT00940000159743.c.a	ENSGT00390000012547.b.x.b	ENSGT00940000165242.e.a	ENSGT00390000003033.d	ENSGT00510000047481.f.b	ENSGT00940000166096.h	ENSGT01060000253581	ENSGT00940000160342.g.b	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.c #22	ENSGT00940000158407.h #23	ENSGT00530000063609.a.g #26	ENSGT01050000244956.b.u.a	ENSGT00390000006350.e #27	ENSGT00390000005727.b.f ##28	ENSGT00940000155367.e #29	ENSGT00390000018393.eb #30	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000163794	ENSGT00940000178681.b	ENSGT00940000178681.a.a	ENSGT00940000155235.k.a.c	ENSGT00940000155408.o.a.e	ENSGT00940000154453.a.b.a.a.a.b	ENSGT00940000161191.B.a.b	ENSGT00940000159743.c.a	ENSGT00390000012547.b.x.b	ENSGT00940000165242.e.a	ENSGT00390000003033.d	ENSGT00940000166096.h	ENSGT01060000253581	ENSGT00940000160342.g.b	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.c #22	ENSGT00940000158407.h #23	ENSGT00530000063609.a.g #26	ENSGT01050000244956.b.u.a	ENSGT00390000006350.e #27	ENSGT00390000005727.b.f ##28	ENSGT00940000155367.e #29	ENSGT00390000018393.eb #30	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT00940000177114	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b.a
Coho salmon	MODERN SPECIES	11	ENSOKIG00005048806	ENSOKIG00005048810	ENSOKIG00005048815	klf7b (ENSOKIG00005048819)	creb1b (ENSOKIG00005048824)	ccnyl1 (ENSOKIG00005048836)	ENSOKIG00005048842	ENSOKIG00005048845	PLEKHM3 (ENSOKIG00005048849)	idh1 (ENSOKIG00005048897)	ENSOKIG00005049075	armc8 (ENSOKIG00005049098)	ENSOKIG00005049169	CRYGS (ENSOKIG00005049171)	dnajb11 (ENSOKIG00005049174)	satb2 (ENSOKIG00005049182) #22	ENSOKIG00005049184	PLCL1 (ENSOKIG00005049189) #23	rftn2 (ENSOKIG00005049193) #26	MOB4 (ENSOKIG00005000137)	hspe1 (ENSOKIG00005000118) #27	hspd1 (ENSOKIG00005000168) ##28	coq10b (ENSOKIG00005000190) #29	SF3B1 (ENSOKIG00005000295) #30	ANKRD44 (ENSOKIG00005000788)	pikfyve (ENSOKIG00005001656)	ENSOKIG00005002540	ENSOKIG00005002554	ENSOKIG00005002566	crygm7 (ENSOKIG00005002585)	ENSOKIG00005002590
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005014747	ENSOTSG00005014748	ENSOTSG00005014749	klf7b (ENSOTSG00005014750)	creb1b (ENSOTSG00005014751)	ccnyl1 (ENSOTSG00005014763)	ENSOTSG00005014768	PLEKHM3 (ENSOTSG00005014772)	idh1 (ENSOTSG00005014777)	ENSOTSG00005014983	armc8 (ENSOTSG00005015018)	rab5b (ENSOTSG00005017438)	ENSOTSG00005017439	crygs1 (ENSOTSG00005017442)	dnajb11 (ENSOTSG00005017458)	satb2 (ENSOTSG00005017465) #22	PLCL1 (ENSOTSG00005017505) #23	rftn2 (ENSOTSG00005017506) #26	MOB4 (ENSOTSG00005017530)	hspe1 (ENSOTSG00005017509) #27	hspd1 (ENSOTSG00005017536) ##28	coq10b (ENSOTSG00005017537) #29	SF3B1 (ENSOTSG00005017538) #30	ANKRD44 (ENSOTSG00005017574)	pikfyve (ENSOTSG00005027084)	ENSOTSG00005027126	ENSOTSG00005027127	crygm7 (ENSOTSG00005027128)	ENSOTSG00005027130	crygm6 (ENSOTSG00005027132)	si:dkey-57a22.15 (ENSOTSG00005027134)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000058316	creb1b (ENSOMYG00000015698)	ccnyl1 (ENSOMYG00000077832)	ENSOMYG00000015746	ENSOMYG00000056930	ENSOMYG00000015759	idh1 (ENSOMYG00000015786)	ENSOMYG00000016169	ENSOMYG00000056558	armc8 (ENSOMYG00000016390)	dbr1 (ENSOMYG00000016707)	rab5b (ENSOMYG00000016734)	ENSOMYG00000016754	ENSOMYG00000016813	dnajb11 (ENSOMYG00000016827)	satb2 (ENSOMYG00000016906) #22	ENSOMYG00000016971 #23	rftn2 (ENSOMYG00000016981) #26	MOB4 (ENSOMYG00000017003)	hspd1 (ENSOMYG00000017062) ##28	ENSOMYG00000017102	coq10b (ENSOMYG00000017107) #29	SF3B1 (ENSOMYG00000017172) #30	ANKRD44 (ENSOMYG00000018186)	pikfyve (ENSOMYG00000019478)	ENSOMYG00000075666	ENSOMYG00000022842	ENSOMYG00000022852	ENSOMYG00000022863	crygm7 (ENSOMYG00000022914)	ENSOMYG00000022892
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000154349.c.a	ENSGT00940000163794	ENSGT00940000178681.a.a	ENSGT00940000155235.k.a.c	ENSGT00940000155408.o.a.e	ENSGT00940000154453.a.b.a.a.a.b	ENSGT00940000162639.a.a	ENSGT00940000159743.c.a	ENSGT00390000012547.b.x.b	ENSGT00940000165242.e.a	ENSGT00390000003033.d	ENSGT00940000166096.h	ENSGT00940000162599.m	ENSGT00940000160342.g.b	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.c #22	ENSGT00940000158407.h #23	ENSGT00530000063609.a.g #26	ENSGT01050000244956.b.u.a	ENSGT00390000006350.e #27	ENSGT00390000005727.b.f ##28	ENSGT00940000155367.e #29	ENSGT00390000018393.eb #30	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT01050000244956.b.v.c	ENSGT00940000163322.b.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b.a
River trout	MODERN SPECIES	16	ramp1 (ENSSTUG00000010313)	ube2f (ENSSTUG00000010326)	zgc:162396 (ENSSTUG00000010404)	klf7b (ENSSTUG00000010461)	creb1b (ENSSTUG00000010469)	ccnyl1 (ENSSTUG00000010491)	ENSSTUG00000010547	PLEKHM3 (ENSSTUG00000010559)	idh1 (ENSSTUG00000010572)	ENSSTUG00000010728	armc8 (ENSSTUG00000010764)	rab5b (ENSSTUG00000011218)	lcmt2 (ENSSTUG00000011225)	CRYGS (ENSSTUG00000011277)	dnajb11 (ENSSTUG00000011283)	satb2 (ENSSTUG00000011531) #22	PLCL1 (ENSSTUG00000011559) #23	rftn2 (ENSSTUG00000011566) #26	MOB4 (ENSSTUG00000011613)	hspe1 (ENSSTUG00000011583) #27	hspd1 (ENSSTUG00000011643) ##28	coq10b (ENSSTUG00000011723) #29	SF3B1 (ENSSTUG00000011735) #30	ANKRD44 (ENSSTUG00000011891)	pikfyve (ENSSTUG00000015448)	ENSSTUG00000019427	ENSSTUG00000019452	crygm7 (ENSSTUG00000019470)	ENSSTUG00000019480	crygm6 (ENSSTUG00000019486)	si:dkey-57a22.15 (ENSSTUG00000019496)
Atlantic salmon	MODERN SPECIES	17	zgc:162396 (ENSSSAG00000102136)	ENSSSAG00000106485	klf7b (ENSSSAG00000048735)	ENSSSAG00000083151	creb1b (ENSSSAG00000089906)	ccnyl1 (ENSSSAG00000048803)	fzd5 (ENSSSAG00000106789)	plekhm3 (ENSSSAG00000048838)	idh1 (ENSSSAG00000053426)	ENSSSAG00000090279	armc8 (ENSSSAG00000050879)	ENSSSAG00000084004	ENSSSAG00000050803	ENSSSAG00000103538	dnajb11 (ENSSSAG00000103574)	satb2 (ENSSSAG00000050749) #22	ENSSSAG00000099049	ENSSSAG00000083923 #23	rftn2 (ENSSSAG00000053726) #26	hspe1 (ENSSSAG00000053757) #27	hspd1 (ENSSSAG00000053792) ##28	coq10b (ENSSSAG00000053811) #29	SF3B1 (ENSSSAG00000053819) #30	ANKRD44 (ENSSSAG00000053961)	pikfyve (ENSSSAG00000057774)	ENSSSAG00000058447	ENSSSAG00000107295	crygm7 (ENSSSAG00000084817)	crygm6 (ENSSSAG00000058477)	si:dkey-57a22.15 (ENSSSAG00000087743)	ENSSSAG00000058573
Huchen	MODERN SPECIES	217							PLEKHM3 (ENSHHUG00000025257)	idh1 (ENSHHUG00000025267)	ENSHHUG00000025387	armc8 (ENSHHUG00000025392)	dbr1 (ENSHHUG00000025565)	rab5b (ENSHHUG00000025599)	crygs1 (ENSHHUG00000025604)	tbccd1 (ENSHHUG00000025625)	dnajb11 (ENSHHUG00000025637)	satb2 (ENSHHUG00000025718) #22	PLCL1 (ENSHHUG00000025727) #23	rftn2 (ENSHHUG00000025735) #26	MOB4 (ENSHHUG00000025751)	hspd1 (ENSHHUG00000025817) ##28	ENSHHUG00000025846	coq10b (ENSHHUG00000025850) #29	SF3B1 (ENSHHUG00000025858) #30	ANKRD44 (ENSHHUG00000025977)	pikfyve (ENSHHUG00000026027)	ENSHHUG00000026057	ENSHHUG00000026074	ENSHHUG00000026169	crygm6 (ENSHHUG00000026170)	si:dkey-57a22.15 (ENSHHUG00000026183)	ENSHHUG00000026196
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00940000178681.a.a	ENSGT00940000155235.k.a.c	ENSGT00940000155408.o.a.e	ENSGT00940000154453.a.b.a.a.a.b	ENSGT00940000161191.B.a	ENSGT00940000159743.c.a	ENSGT00390000012547.b.x.b	ENSGT00940000165242.e.a	ENSGT00390000003033.d	ENSGT00510000047481.f.b	ENSGT00940000166096.h	ENSGT00940000162599	ENSGT00940000160342.g.b	ENSGT00470000042284	ENSGT00940000155792.h	ENSGT00390000008096.B.e.a.d #22	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.c #22	ENSGT00940000158407.h #23	ENSGT00530000063609.a.g #26	ENSGT01050000244956.b.u.a	ENSGT00390000005727.b.f ##28	ENSGT00940000155367.e #29	ENSGT00390000018393.eb #30	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT00940000177114	ENSGT00530000063186.b.b.p	ENSGT00940000154695.d.b.b.b.b	ENSGT00940000159224.b.a
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000178681.a.b	ENSGT00940000155235.k.a.d	ENSGT00940000155408.o.a.f	ENSGT00940000154453.a.b.a.a.a.a	ENSGT00940000162639.a.b	ENSGT00940000159743.d	ENSGT00940000161191.B.a.a	ENSGT00940000159743.c.b	ENSGT00390000012547.b.x.a	ENSGT00940000165242.e.b.a.a	ENSGT00390000003033.c	ENSGT00510000047481.f.a	ENSGT00940000166096.g	ENSGT00470000042284	ENSGT00940000155792.h	ENSGT00390000008096.B.e.a.d #22	ENSGT00940000158407.g #23	ENSGT00530000063609.a.h #26	ENSGT01050000244956.b.u.b	ENSGT00390000006350.f #27	ENSGT00390000005727.b.e ##28	ENSGT00940000155367.f #29	ENSGT00390000018393.db #30	ENSGT00950000182908.D.o	ENSGT00940000156307.b.d	ENSGT00390000004840	ENSGT00940000164501.a.a.b.b.b	ENSGT00940000163322.a.b.a.b.f	ENSGT00940000163148.a.b.b.a.a.a.j	ENSGT00940000163494.a.b.a.b.b	ENSGT00940000163148.a.a.a.a
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000155235.k.a.d	ENSGT00940000155408.o.a.f	ENSGT00940000154453.a.b.a.a.a.a	ENSGT00940000162639.a.b	ENSGT00940000159743.d	ENSGT00940000161191.B.a.a	ENSGT00940000159743.c.b	ENSGT00390000012547.b.x.a	ENSGT00940000165242.e.b.a.a	ENSGT00390000003033.c	ENSGT00510000047481.f.a	ENSGT00940000166096.g	ENSGT00940000162599.n	ENSGT00470000042284	ENSGT00940000155792.h	ENSGT00390000008096.B.e.a.d #22	ENSGT00940000158407.g #23	ENSGT00530000063609.a.h #26	ENSGT01050000244956.b.u.b	ENSGT00390000006350.f #27	ENSGT00390000005727.b.e ##28	ENSGT00940000155367.f #29	ENSGT00390000018393.db #30	ENSGT00950000182908.D.o	ENSGT00940000156307.b.d	ENSGT00390000004840	ENSGT00940000164501.a.a.b.b.b	ENSGT00940000163322.a.b.a.b.f	ENSGT00940000163148.a.b.b.a.a.a.j	ENSGT00940000163494.a.b.a.b.b	ENSGT00940000163148.a.a.a.a.a
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000088624	klf7b (ENSSSAG00000053939)	creb1b (ENSSSAG00000112465)	ccnyl1 (ENSSSAG00000053909)	fzd5 (ENSSSAG00000120506)	ENSSSAG00000104346	ENSSSAG00000091454	idh1 (ENSSSAG00000048877)	ENSSSAG00000049141	armc8 (ENSSSAG00000049392)	dbr1 (ENSSSAG00000052088)	rab5b (ENSSSAG00000084227)	ENSSSAG00000052141	ENSSSAG00000116518	dnajb11 (ENSSSAG00000111994)	satb2 (ENSSSAG00000053203) #22	ENSSSAG00000053311	ENSSSAG00000088810	PLCL1 (ENSSSAG00000053340) #23	ENSSSAG00000094048	rftn2 (ENSSSAG00000111108) #26	MOB4 (ENSSSAG00000081444)	hspe1 (ENSSSAG00000081441) #27	hspd1 (ENSSSAG00000081432) ##28	coq10b (ENSSSAG00000081427) #29	SF3B1 (ENSSSAG00000081423) #30	ENSSSAG00000120274	ANKRD44 (ENSSSAG00000081383)	pikfyve (ENSSSAG00000081108)	ENSSSAG00000100402	crygm6 (ENSSSAG00000058473)
River trout	MODERN SPECIES	12	zgc:162780 (ENSSTUG00000009925)	ENSSTUG00000009931	klf7b (ENSSTUG00000009938)	creb1b (ENSSTUG00000009944)	ccnyl1 (ENSSTUG00000009996)	ENSSTUG00000010079	PLEKHM3 (ENSSTUG00000010086)	idh1 (ENSSTUG00000010124)	ENSSTUG00000010236	armc8 (ENSSTUG00000010289)	dbr1 (ENSSTUG00000011595)	rab5b (ENSSTUG00000011617)	ENSSTUG00000011626	tbccd1 (ENSSTUG00000011632)	dnajb11 (ENSSTUG00000011647)	satb2 (ENSSTUG00000011931) #22	PLCL1 (ENSSTUG00000011969) #23	rftn2 (ENSSTUG00000011987) #26	MOB4 (ENSSTUG00000012002)	hspe1 (ENSSTUG00000012021) #27	hspd1 (ENSSTUG00000012049) ##28	coq10b (ENSSTUG00000012103) #29	SF3B1 (ENSSTUG00000012136) #30	ANKRD44 (ENSSTUG00000012286)	pikfyve (ENSSTUG00000013007)	crygm6 (ENSSTUG00000014959)	si:dkey-57a22.15 (ENSSTUG00000014966)	crygm1 (ENSSTUG00000014983)	crygmxl1 (ENSSTUG00000014995)	ENSSTUG00000015006	ENSSTUG00000034595
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000165586.a.a	ENSGT00940000178681.a.b	ENSGT00940000155235.k.a.d	ENSGT00940000155408.o.a.f	ENSGT00940000154453.a.b.a.a.a.a	ENSGT00940000162639.a.b	ENSGT00940000159743.c.b	ENSGT00390000012547.b.x.a	ENSGT00940000165242.e.b.b	ENSGT00390000003033.c	ENSGT00510000047481.f.a	ENSGT00940000166096.g	ENSGT01000000220382	ENSGT00470000042284	ENSGT00940000155792.h	ENSGT00390000008096.B.e.a.d #22	ENSGT00940000158407.g #23	ENSGT00530000063609.a.h #26	ENSGT01050000244956.b.u.b	ENSGT00390000006350.f #27	ENSGT00390000005727.b.e ##28	ENSGT00940000155367.f #29	ENSGT00390000018393.db #30	ENSGT00950000182908.D.o	ENSGT00940000156307.b.d	ENSGT00940000164501.a.a.b.b.b	ENSGT00940000163322.a.b.a.b.f	ENSGT00940000163148.a.b.b.a.a.a.j	ENSGT00940000163148.a.b.b.b.d.a.a.b	ENSGT00940000163494.a.b.a.b.b	ENSGT00940000163148.a.a.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000154349.c.b	ENSGT00940000165586.a.a	ENSGT00940000178681.a.b	ENSGT00940000155235.k.a.d	ENSGT00940000155408.o.a.f	ENSGT00940000154453.a.b.a.a.a.a	ENSGT00940000162639.a.b	ENSGT00940000159743.c.b	ENSGT00390000012547.b.x.a	ENSGT00390000003033.c	ENSGT00510000047481.f.a	ENSGT00940000166096.g	ENSGT01000000220382	ENSGT00470000042284	ENSGT00940000155792.h	ENSGT00390000008096.B.e.a.d #22	ENSGT00940000158407.g #23	ENSGT00530000063609.a.h #26	ENSGT01050000244956.b.u.b	ENSGT00390000006350.f #27	ENSGT00390000005727.b.e ##28	ENSGT00940000155367.f #29	ENSGT00390000018393.db #30	ENSGT00950000182908.D.o	ENSGT00940000156307.b.d	ENSGT00940000164501.a.a.b.b.b	ENSGT00940000163322.a.b.a.b.f	ENSGT00940000163148.a.b.b.a.a.a.j	ENSGT00940000163148.a.b.b.b.d.a.a.b	ENSGT00940000163494.a.b.a.b.b	ENSGT00940000163148.a.a.a.a
Coho salmon	MODERN SPECIES	18	zgc:162780 (ENSOKIG00005024648)	ENSOKIG00005024634	ENSOKIG00005024623	klf7b (ENSOKIG00005024600)	creb1b (ENSOKIG00005024554)	ccnyl1 (ENSOKIG00005024540)	fzd5 (ENSOKIG00005024531)	PLEKHM3 (ENSOKIG00005024517)	idh1 (ENSOKIG00005024323)	armc8 (ENSOKIG00005021250)	dbr1 (ENSOKIG00005021000)	rab5b (ENSOKIG00005020965)	ENSOKIG00005020949	tbccd1 (ENSOKIG00005020923)	dnajb11 (ENSOKIG00005020809)	satb2 (ENSOKIG00005020774) #22	PLCL1 (ENSOKIG00005020711) #23	rftn2 (ENSOKIG00005020694) #26	MOB4 (ENSOKIG00005020680)	hspe1 (ENSOKIG00005020651) #27	hspd1 (ENSOKIG00005020599) ##28	coq10b (ENSOKIG00005020582) #29	SF3B1 (ENSOKIG00005020547) #30	ANKRD44 (ENSOKIG00005017701)	pikfyve (ENSOKIG00005014938)	ENSOKIG00005014547	crygmxl1 (ENSOKIG00005014540)	ENSOKIG00005014508	ENSOKIG00005014491	ENSOKIG00005014477	ENSOKIG00005014475
Chinook salmon	MODERN SPECIES	3053																satb2 (ENSOTSG00005041404) #22
Rainbow trout	MODERN SPECIES	14	klf7b (ENSOMYG00000022387)	ENSOMYG00000076803	creb1b (ENSOMYG00000022353)	ccnyl1 (ENSOMYG00000022318)	fzd5 (ENSOMYG00000073763)	ENSOMYG00000071556	PLEKHM3 (ENSOMYG00000022306)	idh1 (ENSOMYG00000022000)	ENSOMYG00000064355	armc8 (ENSOMYG00000019919)	dbr1 (ENSOMYG00000019774)	rab5b (ENSOMYG00000019771)	ENSOMYG00000019765	ENSOMYG00000019760	dnajb11 (ENSOMYG00000019756)	satb2 (ENSOMYG00000068548) #22	ENSOMYG00000019746 #23	rftn2 (ENSOMYG00000056375) #26	mob3 (ENSOMYG00000019689)	hspd1 (ENSOMYG00000019648) ##28	coq10b (ENSOMYG00000019601) #29	SF3B1 (ENSOMYG00000019571) #30	ANKRD44 (ENSOMYG00000019539)	pikfyve (ENSOMYG00000019157)	ENSOMYG00000056106	crygm6 (ENSOMYG00000018980)	ENSOMYG00000018973	ENSOMYG00000018968	ENSOMYG00000024695	ENSOMYG00000018955	ENSOMYG00000018938
Huchen	MODERN SPECIES	2015											armc8 (ENSHHUG00000023956)	dbr1 (ENSHHUG00000024088)	rab5b (ENSHHUG00000024106)	tbccd1 (ENSHHUG00000024112)	dnajb11 (ENSHHUG00000024117)	satb2 (ENSHHUG00000024195) #22
Northern pike	MODERN SPECIES	15	ENSELUG00000027165	klf7b (ENSELUG00000005383)	creb1b (ENSELUG00000005394)	ccnyl1 (ENSELUG00000005420)	ENSELUG00000005440	PLEKHM3 (ENSELUG00000005453)	idh1 (ENSELUG00000005492)	ENSELUG00000005519	armc8 (ENSELUG00000005566)	dbr1 (ENSELUG00000005587)	rab5b (ENSELUG00000033798)	lcmt2 (ENSELUG00000005620)	CRYGS (ENSELUG00000005634)	tbccd1 (ENSELUG00000005651)	dnajb11 (ENSELUG00000005667)	satb2 (ENSELUG00000005722) #22	PLCL1 (ENSELUG00000001594) #23	rftn2 (ENSELUG00000005798) #26	MOB4 (ENSELUG00000005831)	hspe1 (ENSELUG00000005886) #27	hspd1 (ENSELUG00000005904) ##28	coq10b (ENSELUG00000005921) #29	SF3B1 (ENSELUG00000005977) #30	ANKRD44 (ENSELUG00000006146)	pikfyve (ENSELUG00000006222)	ENSELUG00000030448	crygm7 (ENSELUG00000006313)	ENSELUG00000006329	crygm6 (ENSELUG00000006339)	si:dkey-57a22.15 (ENSELUG00000006353)	crygm1 (ENSELUG00000006426)
Clupeocephala	ANCESTRAL SPECIES	784																ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24
Euteleosteomorpha	ANCESTRAL SPECIES	388															ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163322.a.b.a.a	ENSGT00940000163148.a.b.b.b
Acanthomorphata	ANCESTRAL SPECIES	260														ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163148.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	125												ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163148.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d
Percomorphaceae	ANCESTRAL SPECIES	96					ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163148.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000155021	ENSGT00940000160883.a	ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00940000179011	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000165189	ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Ovalentaria_B	ANCESTRAL SPECIES	22					ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Pomacentridae	ANCESTRAL SPECIES	153					ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d
Pomacentridae_A	DUPLICATION
Pomacentridae_A	ANCESTRAL SPECIES	171						ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.a #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d
Amphiprion	ANCESTRAL SPECIES	132						ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.a #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00390000010463.a.b.c.a	ENSGT01050000244905.A.a	ENSGT00940000167649	ENSGT00940000155212.ab.a	ENSGT00390000005717.s	ENSGT00940000154319.j
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000006561	ENSAPEG00000006528	GPR180 (ENSAPEG00000006487)	ENSAPEG00000006410	ENSAPEG00000005976	SLC5A3 (ENSAPEG00000005887)	ENSAPEG00000005865	ENSAPEG00000005840	ENSAPEG00000005823	fam184aa (ENSAPEG00000005756)	ENSAPEG00000005703	ENSAPEG00000005697	fam184aa (ENSAPEG00000005634)	ENSAPEG00000005573	CRYGS (ENSAPEG00000005554)	SATB2 (ENSAPEG00000005424) #22	ENSAPEG00000005335 #24	ENSAPEG00000005282	ENSAPEG00000005311	ENSAPEG00000005271	ENSAPEG00000005264	ENSAPEG00000005232	crygs3 (ENSAPEG00000005217)	etv5b (ENSAPEG00000005194)	glsa (ENSAPEG00000005118)	stat1a (ENSAPEG00000005008)	mstna (ENSAPEG00000004974)	ENSAPEG00000004967	ENSAPEG00000004949	ENSAPEG00000004935	ENSAPEG00000004921
Clown anemonefish	MODERN SPECIES	22																ENSAOCG00000001682 #22	ENSAOCG00000023373 #24	ENSAOCG00000023433	crygmxl1 (ENSAOCG00000023453)	ENSAOCG00000023473	ENSAOCG00000023478	ENSAOCG00000023498	crygs3 (ENSAOCG00000023524)	etv5b (ENSAOCG00000023560)	glsa (ENSAOCG00000023785)	stat1a (ENSAOCG00000023877)	ENSAOCG00000023888	mstna (ENSAOCG00000023900)	SHROOM2 (ENSAOCG00000023911)	ENSAOCG00000023919	ENSAOCG00000023922
Spiny chromis	MODERN SPECIES	3341																ENSAPOG00000018931 #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00390000008096.B.e.b.b #22
Spiny chromis	MODERN SPECIES	3215																SATB2 (ENSAPOG00000003799) #22
Bicolor damselfish	MODERN SPECIES	1762														ENSSPAG00000012761	ENSSPAG00000012750 ##22	SATB2 (ENSSPAG00000012620) #22	ENSSPAG00000012577	crygm6 (ENSSPAG00000012558)	crygmxl1 (ENSSPAG00000012535)	ENSSPAG00000012521	ENSSPAG00000012451	ENSSPAG00000012426	ENSSPAG00000012413	crygs3 (ENSSPAG00000012391)	etv5b (ENSSPAG00000012323)	ENSSPAG00000012312	ENSSPAG00000012301
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00530000063970.e	ENSGT00530000063970.f.eb.a.a.a.b.a	ENSGT01060000248713	ENSGT00530000063970.f.eb.a.a.a.b.b.a.b.a	ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00940000171952.A	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	25			ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00940000171952.A.c	ENSGT00940000171952.A.d.b	ENSGT00940000171952.A.d.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29			ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00940000171952.A.c	ENSGT00940000171952.A.d.b	ENSGT00940000171952.A.d.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848
Haplochromini	ANCESTRAL SPECIES	26		ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367.p	ENSGT00940000158367.o	ENSGT00940000171952.A.c	ENSGT00940000171952.A.d.b	ENSGT00940000171952.A.d.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000164275.f.c.a	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848
Burton s mouthbrooder	MODERN SPECIES	877													ENSHBUG00000003035	fam184aa (ENSHBUG00000003080)	ENSHBUG00000003094	SATB2 (ENSHBUG00000003139) #22	ENSHBUG00000003183 #24	crygm6 (ENSHBUG00000003246)	ENSHBUG00000003257	ENSHBUG00000003266	ENSHBUG00000003278	ENSHBUG00000003289	ENSHBUG00000003292	ENSHBUG00000003312	ENSHBUG00000001143	etv5b (ENSHBUG00000003331)
Haplochromini_A	ANCESTRAL SPECIES	29		ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367.o	ENSGT00940000158367.p	ENSGT00940000171952.A.c	ENSGT00940000171952.A.d.b	ENSGT00940000171952.A.d.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000164275.f.c.a	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848
P. nyererei	MODERN SPECIES	571												ENSPNYG00000006882	ENSPNYG00000006875	fam184aa (ENSPNYG00000006830)	ENSPNYG00000006802	SATB2 (ENSPNYG00000006769) #22	ENSPNYG00000006754	ENSPNYG00000006623	ENSPNYG00000006602	ENSPNYG00000006586	ENSPNYG00000006468	ENSPNYG00000006264	ENSPNYG00000006194	crygs3 (ENSPNYG00000006171)	etv5b (ENSPNYG00000006152)	ENSPNYG00000006128	unc50 (ENSPNYG00000006115)	ndufs1 (ENSPNYG00000006054)	zgc:110699 (ENSPNYG00000006031)	HARBI1 (ENSPNYG00000006001)	atg13 (ENSPNYG00000005925)
Haplochromini_B	ANCESTRAL SPECIES	38		ENSGT01060000248718.a	ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367.o	ENSGT00940000171952.A.c	ENSGT00940000171952.A.d.b	ENSGT00940000171952.A.d.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000164275.f.c.b	ENSGT00940000164275.f.c.a	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946
Eastern happy	MODERN SPECIES	14	ENSACLG00000003894	GPR180 (ENSACLG00000003881)	ENSACLG00000003848	ENSACLG00000003774	SLC5A3 (ENSACLG00000003753)	ENSACLG00000003039	ENSACLG00000002950	ENSACLG00000002911	ENSACLG00000002887	ENSACLG00000002857	ENSACLG00000002734	ENSACLG00000002688	fam184aa (ENSACLG00000002646)	ENSACLG00000002589	CRYGS (ENSACLG00000002630)	SATB2 (ENSACLG00000002516) #22	ENSACLG00000002494 #24	ENSACLG00000002490	crygmxl1 (ENSACLG00000002479)	ENSACLG00000002472	ENSACLG00000002464	ENSACLG00000002446	ENSACLG00000002437	ENSACLG00000002431	crygs3 (ENSACLG00000002422)	etv5b (ENSACLG00000002412)	ENSACLG00000002405	ENSACLG00000002400	unc50 (ENSACLG00000002394)	ndufs1 (ENSACLG00000002346)	zgc:110699 (ENSACLG00000002333)
Zebra mbuna	MODERN SPECIES	1105	LRRC3 (ENSMZEG00005017381)	ENSMZEG00005008993	ENSMZEG00005008934	ENSMZEG00005008921	ENSMZEG00005008894	GPR180 (ENSMZEG00005008873)	ENSMZEG00005008858	ENSMZEG00005008814	SLC5A3 (ENSMZEG00005008785)	ENSMZEG00005008752	ENSMZEG00005008736	ENSMZEG00005008645	ENSMZEG00005008616	fam184aa (ENSMZEG00005008567)	ENSMZEG00005008529	SATB2 (ENSMZEG00005008475) #22	ENSMZEG00005008450 #24	crygm6 (ENSMZEG00005008441)	ENSMZEG00005008429	ENSMZEG00005008413	ENSMZEG00005008405	ENSMZEG00005008395	ENSMZEG00005008384	crygs3 (ENSMZEG00005008376)	ENSMZEG00005008361	ENSMZEG00005008344	ENSMZEG00005008329	ENSMZEG00005008301	ENSMZEG00005008283	ENSMZEG00005008263	SOX1 (ENSMZEG00005008255)
Lyretail cichlid	MODERN SPECIES	469			ENSNBRG00000019501	GPR180 (ENSNBRG00000019514)	ENSNBRG00000019560	ENSNBRG00000019630	ENSNBRG00000019659	ENSNBRG00000019674	ENSNBRG00000019742	ENSNBRG00000019768	ENSNBRG00000019788	ENSNBRG00000019806	fam184aa (ENSNBRG00000019821)	ENSNBRG00000019860	CRYGS (ENSNBRG00000019880)	SATB2 (ENSNBRG00000019890) #22	ENSNBRG00000019918 #24	ENSNBRG00000019944	crygmxl1 (ENSNBRG00000019979)	ENSNBRG00000020023	ENSNBRG00000020039	ENSNBRG00000020066	ENSNBRG00000020160	crygs3 (ENSNBRG00000020172)	etv5b (ENSNBRG00000020191)	ENSNBRG00000020278	unc50 (ENSNBRG00000020363)	ENSNBRG00000020379	ENSNBRG00000020397	HARBI1 (ENSNBRG00000020442)	atg13 (ENSNBRG00000020464)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000035867	ENSONIG00000015306	ENSONIG00000028752	GPR180 (ENSONIG00000015303)	ENSONIG00000015300	ENSONIG00000015293	SLC5A3 (ENSONIG00000035996)	ENSONIG00000036064	ENSONIG00000015288	ENSONIG00000030818	ENSONIG00000033357	ENSONIG00000015285	ENSONIG00000029903	fam184aa (ENSONIG00000015281)	ENSONIG00000015277	SATB2 (ENSONIG00000015271) #22	ENSONIG00000015267 #24	crygm6 (ENSONIG00000031166)	crygmxl1 (ENSONIG00000015276)	ENSONIG00000015261	ENSONIG00000040897	ENSONIG00000013732	ENSONIG00000015254	ENSONIG00000015263	crygs3 (ENSONIG00000015253)	etv5b (ENSONIG00000015250)	ENSONIG00000032717	ENSONIG00000015246	ENSONIG00000015241	ENSONIG00000015245	ENSONIG00000015239
Midas cichlid	MODERN SPECIES	569											ENSACIG00000011293	ENSACIG00000011312	fam184aa (ENSACIG00000011317)	ENSACIG00000011362	CRYGS (ENSACIG00000011431)	SATB2 (ENSACIG00000011479) #22	ENSACIG00000011513	crygm6 (ENSACIG00000011526)	crygmxl1 (ENSACIG00000011537)	ENSACIG00000011546	ENSACIG00000011556	ENSACIG00000011578	ENSACIG00000011589	crygs3 (ENSACIG00000011597)	etv5b (ENSACIG00000011613)	CACNB4 (ENSACIG00000011680)	SEMA5B (ENSACIG00000011712)	kpnb3 (ENSACIG00000011763)	atg13 (ENSACIG00000011819)	HARBI1 (ENSACIG00000011880)	CREB3L1 (ENSACIG00000011893)
Atherinomorphae	ANCESTRAL SPECIES	24						ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00390000016794.d	ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000165189	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183273	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00940000153309	ENSGT00390000016794.d	ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000165189	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000158367	ENSGT00950000183273	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163148.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000153514.b.m.b
Mangrove rivulus	MODERN SPECIES	234												ENSKMAG00000002447	ENSKMAG00000002463	fam184aa (ENSKMAG00000002475)	ENSKMAG00000002546	SATB2 (ENSKMAG00000002608) #22	ENSKMAG00000002689 #24	ENSKMAG00000002731	ENSKMAG00000002758	ENSKMAG00000002794	ENSKMAG00000003047	ENSKMAG00000003099	etv5b (ENSKMAG00000003137)	ENSKMAG00000003158	ENSKMAG00000003167	CYP4F8 (ENSKMAG00000003184)	ENSKMAG00000003280	SLC19A1 (ENSKMAG00000003296)	ENSKMAG00000003307	arpc2 (ENSKMAG00000003350)	ENSKMAG00000003409
Turquoise killifish	MODERN SPECIES	1615	CABZ01008011.1 (ENSNFUG00015024464)	Nfu_g_1_014065 (ENSNFUG00015024461)	cyp4f3 (ENSNFUG00015024408)	ENSNFUG00015024403	ENSNFUG00015024402	ENSNFUG00015024397	ENSNFUG00015024396	GPR180 (ENSNFUG00015024392)	PL10 (ENSNFUG00015024181)	ENSNFUG00015024153	ENSNFUG00015024149	ENSNFUG00015024147	ENSNFUG00015024145	fam184aa (ENSNFUG00015024128)	KCNH3 (ENSNFUG00015024103)	SATB2 (ENSNFUG00015024094) #22	ENSNFUG00015024090 #24	crygm6 (ENSNFUG00015024082)	crygmxl1 (ENSNFUG00015024070)	ENSNFUG00015024068	ENSNFUG00015024065	ENSNFUG00015024063	ENSNFUG00015024062	ENSNFUG00015024040	ETV5 (ENSNFUG00015024029)	CACNB4 (ENSNFUG00015023293)	ENSNFUG00015023234	ATG13 (ENSNFUG00015023214)	ENSNFUG00015023208	creb3l1 (ENSNFUG00015023195)	ndufs1 (ENSNFUG00015023135)
Cyprinodontoidei	ANCESTRAL SPECIES	26					ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183273.d	ENSGT00950000183273.c.a.b	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00530000063970.e	ENSGT00940000177522	ENSGT00940000157645.e.b.b.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183273.c.b.a	ENSGT00950000183273.c.a.b	ENSGT00950000183273.c.a.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946
Poecilia	ANCESTRAL SPECIES	30	ENSGT00530000063970.e	ENSGT00940000177522.d	ENSGT00940000157645.e.b.b.b	ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183273.c.b.a	ENSGT00950000183273.c.a.b	ENSGT00950000183273.c.a.a	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
NAME_6	ANCESTRAL SPECIES	58	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00530000063970.e	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183273.c.b.a	ENSGT00950000183273.c.a.b	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b
Amazon molly	MODERN SPECIES	547	ENSPFOG00000022047	ENSPFOG00000004104	ENSPFOG00000021872	ENSPFOG00000020382	ENSPFOG00000004152	GPR180 (ENSPFOG00000004164)	TGDS (ENSPFOG00000004321)	ENSPFOG00000004599	SLC5A3 (ENSPFOG00000004602)	ENSPFOG00000004639	ENSPFOG00000004770	ENSPFOG00000004767	ENSPFOG00000020186	fam184aa (ENSPFOG00000004823)	ENSPFOG00000005363	SATB2 (ENSPFOG00000005488) #22	ENSPFOG00000005602 #24	ENSPFOG00000005721	ENSPFOG00000005687	ENSPFOG00000024822	ENSPFOG00000021883	ENSPFOG00000005770	ENSPFOG00000022649	ENSPFOG00000023872	crygs3 (ENSPFOG00000023703)	etv5b (ENSPFOG00000005804)	ENSPFOG00000022234	CACNB4 (ENSPFOG00000005922)	SEMA5B (ENSPFOG00000006099)	kpnb3 (ENSPFOG00000006616)	atg13 (ENSPFOG00000006965)
Sailfin molly	MODERN SPECIES	368	ENSPLAG00000006704	ENSPLAG00000006697	ENSPLAG00000006685	ENSPLAG00000006672	ENSPLAG00000006663	TGDS (ENSPLAG00000006650)	GPR180 (ENSPLAG00000006621)	ENSPLAG00000006604	SLC5A3 (ENSPLAG00000006530)	ENSPLAG00000000141	ENSPLAG00000006501	ENSPLAG00000006477	ENSPLAG00000006471	fam184aa (ENSPLAG00000006462)	ENSPLAG00000006405	SATB2 (ENSPLAG00000006084) #22	ENSPLAG00000006076 #24	ENSPLAG00000006062	ENSPLAG00000006007	ENSPLAG00000005998	ENSPLAG00000005986	ENSPLAG00000005963
Guppy	MODERN SPECIES	450	ENSPREG00000012416	ENSPREG00000012404	ENSPREG00000012391	GPR180 (ENSPREG00000012358)	ENSPREG00000012335	ENSPREG00000012291	slc5a3a (ENSPREG00000012263)	ENSPREG00000012245	ENSPREG00000012230	ENSPREG00000012220	ENSPREG00000012208	ENSPREG00000012191	ENSPREG00000012176	fam184aa (ENSPREG00000012144)	ENSPREG00000012123	SATB2 (ENSPREG00000012112) #22	ENSPREG00000012098 #24	ENSPREG00000012078	ENSPREG00000012068	ENSPREG00000012061	ENSPREG00000012054	ENSPREG00000012045	ENSPREG00000012039	ENSPREG00000012027	crygs3 (ENSPREG00000012018)	etv5b (ENSPREG00000012003)	CACNB4 (ENSPREG00000011944)	SEMA5B (ENSPREG00000011906)	kpnb3 (ENSPREG00000011796)	atg13 (ENSPREG00000011716)	ENSPREG00000011695
Platyfish	MODERN SPECIES	16	ENSXMAG00000028695	ENSXMAG00000009655	ENSXMAG00000025239	ENSXMAG00000027811	GPR180 (ENSXMAG00000025201)	TGDS (ENSXMAG00000002759)	ENSXMAG00000002739	SLC5A3 (ENSXMAG00000002730)	ENSXMAG00000004148	ENSXMAG00000021460	ENSXMAG00000020985	ENSXMAG00000004171	ENSXMAG00000023701	fam184aa (ENSXMAG00000004173)	ENSXMAG00000004198	SATB2 (ENSXMAG00000004215) #22	ENSXMAG00000021766 #24	ENSXMAG00000024637	crygm6 (ENSXMAG00000019928)	ENSXMAG00000019926	ENSXMAG00000030076	ENSXMAG00000029114	ENSXMAG00000021580	ENSXMAG00000027613	crygs3 (ENSXMAG00000015731)	etv5b (ENSXMAG00000026320)	CACNB4 (ENSXMAG00000004242)	SEMA5B (ENSXMAG00000004276)	kpnb3 (ENSXMAG00000004307)	atg13 (ENSXMAG00000004349)	HARBI1 (ENSXMAG00000024171)
NAME_4	ANCESTRAL SPECIES	76													ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.a.b	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946
Mummichog	MODERN SPECIES	980													ENSFHEG00000002689	fam184aa (ENSFHEG00000002685)	ENSFHEG00000002665	SATB2 (ENSFHEG00000002554) #22	ENSFHEG00000000765 #24	ENSFHEG00000002504	crygmxl1 (ENSFHEG00000002478)	ENSFHEG00000002439	ENSFHEG00000002435	crygs3 (ENSFHEG00000023224)	etv5b (ENSFHEG00000023203)	CACNB4 (ENSFHEG00000023188)	SEMA5B (ENSFHEG00000023118)	kpnb3 (ENSFHEG00000023049)	atg13 (ENSFHEG00000022890)	HARBI1 (ENSFHEG00000022776)	creb3l1 (ENSFHEG00000022751)	zgc:110699 (ENSFHEG00000022741)	ndufs1 (ENSFHEG00000022721)
Sheepshead minnow	MODERN SPECIES	483													ENSCVAG00000007824	fam184aa (ENSCVAG00000007889)	ENSCVAG00000007924	SATB2 (ENSCVAG00000007994) #22	ENSCVAG00000008027 #24	ENSCVAG00000008033	ENSCVAG00000008053	ENSCVAG00000008068	ENSCVAG00000008078	ENSCVAG00000008082	etv5b (ENSCVAG00000008113)	CACNB4 (ENSCVAG00000008167)	SEMA5B (ENSCVAG00000008245)	kpnb3 (ENSCVAG00000008335)	atg13 (ENSCVAG00000008442)	ENSCVAG00000008455	creb3l1 (ENSCVAG00000008486)	zgc:110699 (ENSCVAG00000008506)	ndufs1 (ENSCVAG00000008532)
Oryzias	ANCESTRAL SPECIES	62						ENSGT01030000235241	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599
Oryzias_b	ANCESTRAL SPECIES	63	ENSGT00530000063503.a.a.a	ENSGT00940000178125	ENSGT00940000157308.h	ENSGT00390000014995	ENSGT00940000155515.a.a	ENSGT00390000008812.a.b	ENSGT01030000235241	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000158367	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000249008
Indian medaka	MODERN SPECIES	34	EPS15L1 (ENSOMEG00000008128)	ctns (ENSOMEG00000007944)	ndufa11 (ENSOMEG00000007925)	ENSOMEG00000007906	ARHGAP39 (ENSOMEG00000007853)	ENSOMEG00000007802	rad54l (ENSOMEG00000007770)	ENSOMEG00000007718	ENSOMEG00000007667	b4galt6 (ENSOMEG00000007573)	ENSOMEG00000007520	ENSOMEG00000000183	ENSOMEG00000007443	fam184aa (ENSOMEG00000007423)	ENSOMEG00000007374	SATB2 (ENSOMEG00000007330) #22	ENSOMEG00000007266 #24	crygm6 (ENSOMEG00000007245)	crygmxl1 (ENSOMEG00000007230)	ENSOMEG00000007220	ENSOMEG00000007192	ENSOMEG00000007135	etv5b (ENSOMEG00000007117)	ENSOMEG00000007084	CACNB4 (ENSOMEG00000007060)	SEMA5B (ENSOMEG00000006995)	ENSOMEG00000006951	frem1b (ENSOMEG00000006926)	nrd1b (ENSOMEG00000006863)	ENSOMEG00000006814	dbt (ENSOMEG00000006766)
Javanese ricefish	MODERN SPECIES	11	tubgcp3 (ENSOJAG00000011847)	ENSOJAG00000014771	ENSOJAG00000014783	ENSOJAG00000014789	ENSOJAG00000014810	ENSOJAG00000014830	ENSOJAG00000014842	ENSOJAG00000014858	ENSOJAG00000014906	ENSOJAG00000015130	ENSOJAG00000015232	ENSOJAG00000015275	fam184aa (ENSOJAG00000015284)	ENSOJAG00000015524	ENSOJAG00000015539	SATB2 (ENSOJAG00000015586) #22	ENSOJAG00000015659 #24	ENSOJAG00000015682	crygmxl1 (ENSOJAG00000015765)	ENSOJAG00000015845	ENSOJAG00000015859	ENSOJAG00000015933	CACNB4 (ENSOJAG00000015968)	SEMA5B (ENSOJAG00000016121)	ENSOJAG00000016804	gemin8 (ENSOJAG00000016823)	ENSOJAG00000016845	rab9a (ENSOJAG00000016853)	ENSOJAG00000016858	ENSOJAG00000016867	PRPS2 (ENSOJAG00000000141)
Oryzias_a	ANCESTRAL SPECIES	112						ENSGT01030000235241	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.a.c	ENSGT00940000164501.a.a.a.a.a.d
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000029143	ENSORLG00000025398	senp7b (ENSORLG00000029608)	ENSORLG00000022476	ENSORLG00000028626	ENSORLG00000022952	GPR180 (ENSORLG00000020452)	ENSORLG00000020450	ENSORLG00000025640	ENSORLG00000022077	ENSORLG00000027711	ENSORLG00000022694	ENSORLG00000029115	fam184aa (ENSORLG00000026094)	ENSORLG00000024956	SATB2 (ENSORLG00000027551) #22	ENSORLG00000028098	ENSORLG00000021849	ENSORLG00000026746	boll (ENSORLG00000025401) #24	ENSORLG00000018968	crygmxl1 (ENSORLG00000018961)	ENSORLG00000023249	ENSORLG00000018955	ENSORLG00000029777	ENSORLG00000029747	ENSORLG00000030551	ENSORLG00000022538	ENSORLG00000018742	ENSORLG00000018750	ENSORLG00000026671
Chinese medaka	MODERN SPECIES	3428																ENSOSIG00000013334 #22
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000165189	ENSGT00640000091610	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT01030000234765	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000160883.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00390000009987	ENSGT00950000183022.a.b	ENSGT00390000010308	ENSGT00390000006347.b	ENSGT00390000017193	ENSGT01030000234579.C.n	ENSGT00940000158737.h	ENSGT00940000155050.b	ENSGT00940000157507	ENSGT00940000156564.b	ENSGT00390000008490	ENSGT00940000160159	ENSGT00940000156152.e.b	ENSGT00940000160394.a	ENSGT00730000111141	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000164501.a.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000153514.b.m.b
Fugu	MODERN SPECIES	20	ENSTRUG00000032654	SLC19A2 (ENSTRUG00000030191)	atg3 (ENSTRUG00000028024)	ENSTRUG00000005537	ENSTRUG00000022801	atp1b1b (ENSTRUG00000027130)	CNGA3 (ENSTRUG00000006140)	UBE3A (ENSTRUG00000006347)	vasa (ENSTRUG00000030182)	ankrd10a (ENSTRUG00000020089)	ENSTRUG00000025902	cryaa (ENSTRUG00000002869)	DGKZ (ENSTRUG00000003102)	CHRM4 (ENSTRUG00000004253)	ENSTRUG00000019967	SATB2 (ENSTRUG00000032787) #22	ENSTRUG00000021705 #24	ENSTRUG00000020190	ENSTRUG00000005499	ENSTRUG00000023210	ENSTRUG00000006250	etv5b (ENSTRUG00000028062)	cacnb4.1 (ENSTRUG00000006633)	zgc:110699 (ENSTRUG00000023270)	creb3l1 (ENSTRUG00000007014)	atg13 (ENSTRUG00000007133)	kpnb3 (ENSTRUG00000007387)	ndufs1 (ENSTRUG00000007977)	tmem205 (ENSTRUG00000024674)	rab3db (ENSTRUG00000008417)	epor (ENSTRUG00000022478)
Tetraodon	MODERN SPECIES	18	SLC19A2 (ENSTNIG00000014482)	atg3 (ENSTNIG00000014481)	ENSTNIG00000014480	ABHD8 (ENSTNIG00000014479)	ENSTNIG00000014478	atp1b1b (ENSTNIG00000014477)	CNGA3 (ENSTNIG00000014476)	UBE3A (ENSTNIG00000014475)	ddx4 (ENSTNIG00000014474)	ankrd10a (ENSTNIG00000014473)	ENSTNIG00000014472	cryaa (ENSTNIG00000014471)	DGKZ (ENSTNIG00000014470)	ENSTNIG00000014469	ENSTNIG00000014468	ENSTNIG00000014467 #22	ENSTNIG00000014466	ENSTNIG00000014465	ENSTNIG00000014464	ENSTNIG00000000847	ENSTNIG00000000360	ENSTNIG00000014463	etv5b (ENSTNIG00000014462)	ENSTNIG00000014461	ENSTNIG00000004248	HARBI1 (ENSTNIG00000004249)	atg13 (ENSTNIG00000004250)	kpnb3 (ENSTNIG00000004251)	ndufs1 (ENSTNIG00000004252)	ENSTNIG00000004253	rab3db (ENSTNIG00000005293)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000160883.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00940000160883.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d
Perciformes	ANCESTRAL SPECIES	24	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a.i	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608
Lumpfish	MODERN SPECIES	11	stk11ip (ENSCLMG00005010899)	igfbp2a (ENSCLMG00005010903)	igfbp5a (ENSCLMG00005010904)	ENSCLMG00005010911	ENSCLMG00005012131	ENSCLMG00005012150	GPR180 (ENSCLMG00005012163)	ENSCLMG00005012165	ENSCLMG00005012182	SLC5A3 (ENSCLMG00005013268)	ENSCLMG00005013271	ENSCLMG00005013275	ENSCLMG00005013276	fam184aa (ENSCLMG00005013277)	ENSCLMG00005013515	SATB2 (ENSCLMG00005013536) #22	ENSCLMG00005013556 #24	ENSCLMG00005013559	ENSCLMG00005013573	ENSCLMG00005013574	ENSCLMG00005013576	ENSCLMG00005013590	STOML2 (ENSCLMG00005013597)	ENSCLMG00005013667	ENSCLMG00005013670	cbsa (ENSCLMG00005013676)	U2AF1 (ENSCLMG00005015124)	zgc:172122 (ENSCLMG00005015130)	ENSCLMG00005015134	ENSCLMG00005015136	ENSCLMG00005015138
Stickleback	MODERN SPECIES		ccdc28a (ENSGACG00000014349)	ENSGACG00000014353	FILIP1L (ENSGACG00000014358)	ENSGACG00000014367	ENSGACG00000014371	COL8A1 (ENSGACG00000014373)	jagn1b (ENSGACG00000014376)	ENSGACG00000014378	GPR180 (ENSGACG00000014388)	ENSGACG00000014396	ENSGACG00000014407	ENSGACG00000014419	ENSGACG00000014424	fam184aa (ENSGACG00000014429)	ENSGACG00000014436	SATB2 (ENSGACG00000014437) #22	ENSGACG00000014439 #24	ENSGACG00000014444	ENSGACG00000014459	ENSGACG00000014464	etv5b (ENSGACG00000014473)	gart (ENSGACG00000014485)	ENSGACG00000014490	ENSGACG00000014493	ENSGACG00000014496	SLC19A1 (ENSGACG00000014498)	ENSGACG00000014502	arpc2 (ENSGACG00000014503)	ENSGACG00000014540	ENSGACG00000014542	ENSGACG00000014544
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a.i	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t
Channel bull blenny	MODERN SPECIES	11	ENSCGOG00000008930	atg13 (ENSCGOG00000008766)	kpnb3 (ENSCGOG00000008080)	SEMA5B (ENSCGOG00000007498)	CACNB4 (ENSCGOG00000007095)	ENSCGOG00000007075	GPR180 (ENSCGOG00000007070)	ENSCGOG00000007022	ENSCGOG00000003388	SLC5A3 (ENSCGOG00000003169)	ENSCGOG00000003158	ENSCGOG00000003155	ENSCGOG00000003153	fam184aa (ENSCGOG00000002863)	ENSCGOG00000002835	SATB2 (ENSCGOG00000002805) #22	ENSCGOG00000002782 #24	ENSCGOG00000002642	ENSCGOG00000021794	ENSCGOG00000021792	ENSCGOG00000021791	ENSCGOG00000021789	ENSCGOG00000021784	crygs3 (ENSCGOG00000021758)	etv5b (ENSCGOG00000021730)	ENSCGOG00000021729	stoml2 (ENSCGOG00000021682)	ENSCGOG00000021670	ENSCGOG00000021665	cbsa (ENSCGOG00000021085)	u2af1 (ENSCGOG00000021056)
Pike perch	MODERN SPECIES	9	zgc:110699 (ENSSLUG00000018339)	HARBI1 (ENSSLUG00000018331)	atg13 (ENSSLUG00000018288)	kpnb3 (ENSSLUG00000018227)	SEMA5B (ENSSLUG00000018070)	CACNB4 (ENSSLUG00000016995)	ENSSLUG00000016922	GPR180 (ENSSLUG00000016911)	TGDS (ENSSLUG00000016873)	ENSSLUG00000013681	SLC5A3 (ENSSLUG00000013374)	ENSSLUG00000013332	ENSSLUG00000013321	fam184aa (ENSSLUG00000013307)	ENSSLUG00000013247	SATB2 (ENSSLUG00000013227) #22	ENSSLUG00000013211 #24	crygm6 (ENSSLUG00000013185)	CRYGS (ENSSLUG00000013147)	ENSSLUG00000013133	ENSSLUG00000013131	ENSSLUG00000013127	ENSSLUG00000013121	ENSSLUG00000013106	ENSSLUG00000013075	stoml2 (ENSSLUG00000012763)	ENSSLUG00000012732	ENSSLUG00000012724	cbsa (ENSSLUG00000010237)	u2af1 (ENSSLUG00000010132)	zgc:172122 (ENSSLUG00000010125)
Eupecaria_C	ANCESTRAL SPECIES	33	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225.s.b	ENSGT00940000164013	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b	ENSGT00940000163148.a.b.b.a.b.b.b.a	ENSGT00940000163148.a.b.b.a.a.a	ENSGT00940000163322.a.b.a.b	ENSGT00940000164501.a.a.b.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.b	ENSGT00940000163322.b	ENSGT00940000177114
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	37	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225.s.b	ENSGT00940000164013	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b	ENSGT00940000163148.a.b.b.a.b.b.b.a	ENSGT00940000163148.a.b.b.a.a.a	ENSGT00940000163322.a.b.a.b	ENSGT00940000164501.a.a.b.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.b
European seabass	MODERN SPECIES	15	ENSDLAG00005026184	ENSDLAG00005030529	ENSDLAG00005026149	ENSDLAG00005026146	ENSDLAG00005031991	ENSDLAG00005026144	ENSDLAG00005026143	ENSDLAG00005026056	ENSDLAG00005031339	ENSDLAG00005026021	ENSDLAG00005026019	ENSDLAG00005026014	ENSDLAG00005026004	ENSDLAG00005025999	ENSDLAG00005025997	ENSDLAG00005025996 #22	ENSDLAG00005025995 #24	ENSDLAG00005025993	ENSDLAG00005025992	ENSDLAG00005001953	ENSDLAG00005034722	ENSDLAG00005001958	ENSDLAG00005011417	ENSDLAG00005033835	ENSDLAG00005025990	ENSDLAG00005025986	ENSDLAG00005025952	ENSDLAG00005025911	ENSDLAG00005025890	ENSDLAG00005032120	ENSDLAG00005025881
Large yellow croaker	MODERN SPECIES	486	ENSLCRG00005023190	ENSLCRG00005023257	ENSLCRG00005023260	unc50 (ENSLCRG00005023261)	ndufs1 (ENSLCRG00005023262)	zgc:110699 (ENSLCRG00005023265)	creb3l1 (ENSLCRG00005023267)	ENSLCRG00005023270	atg13 (ENSLCRG00005023275)	kpnb3 (ENSLCRG00005023289)	SEMA5B (ENSLCRG00005023321)	CACNB4 (ENSLCRG00005023338)	etv5b (ENSLCRG00005023557)	ENSLCRG00005023561	ENSLCRG00005023563	SATB2 (ENSLCRG00005023566) #22	ENSLCRG00005023568 #24	ENSLCRG00005000862	ENSLCRG00005000884	ENSLCRG00005000951	fam184aa (ENSLCRG00005000981)	ENSLCRG00005001029	ENSLCRG00005001031	ENSLCRG00005001043	plaat1l (ENSLCRG00005001056)	ENSLCRG00005001061	dusp27 (ENSLCRG00005001063)	ENSLCRG00005001066	ENSLCRG00005001071	cybb (ENSLCRG00005001094)	dynlt3 (ENSLCRG00005001390)
Gilthead seabream	MODERN SPECIES	16	rpl31 (ENSSAUG00010015646)	MAP4K4 (ENSSAUG00010013987)	ENSSAUG00010013896	ENSSAUG00010010686	MCF2L (ENSSAUG00010010458)	cab39l (ENSSAUG00010010440)	cdadc1 (ENSSAUG00010010438)	rcbtb1 (ENSSAUG00010010146)	FGF14 (ENSSAUG00010010139)	tubgcp3 (ENSSAUG00010010123)	ATP11A (ENSSAUG00010007402)	SOX1 (ENSSAUG00010007362)	arhgef7b (ENSSAUG00010005047)	ENSSAUG00010005038	ENSSAUG00010002968	SATB2 (ENSSAUG00010002841) #22	crygm6 (ENSSAUG00010002812)	ENSSAUG00010002801	ENSSAUG00010010442	ENSSAUG00010010441	ENSSAUG00010010439	ENSSAUG00010010414	etv5b (ENSSAUG00010010411)	dhrsx (ENSSAUG00010010409)	prrg2 (ENSSAUG00010010406)	PRR12 (ENSSAUG00010010404)	ENSSAUG00010010373	ENSSAUG00010010365	SLITRK2 (ENSSAUG00010010363)	ENSSAUG00010010361	tspan4b (ENSSAUG00010010356)
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000160883.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d	ENSGT00940000153309	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00940000157440.m.b
Anabantaria	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000164501.a.a.a.b	ENSGT00940000163322.a.b.a.a	ENSGT00940000163148.a.b.a
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163322.a.b.a.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163148.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01090000260005.a.a.a.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000011416	GPR180 (ENSBSLG00000011405)	ENSBSLG00000011358	ENSBSLG00000011015	ENSBSLG00000010240	SLC5A3 (ENSBSLG00000010222)	ENSBSLG00000010188	ENSBSLG00000010159	ENSBSLG00000010139	ENSBSLG00000010084	ENSBSLG00000009939	ENSBSLG00000009784	fam184aa (ENSBSLG00000008683)	ENSBSLG00000008163	ENSBSLG00000008140	SATB2 (ENSBSLG00000008095) #22	ENSBSLG00000007999 #24	crygm6 (ENSBSLG00000007923)	ENSBSLG00000007831	ENSBSLG00000007704	ENSBSLG00000007694	ENSBSLG00000007682	ENSBSLG00000007666	ENSBSLG00000007656	ENSBSLG00000007572	ENSBSLG00000007388	ENSBSLG00000007310	ENSBSLG00000007107	ENSBSLG00000006740	ENSBSLG00000006368	ENSBSLG00000005885
Siamese fighting fish	MODERN SPECIES	50																SATB2 (ENSBSLG00000019430) #22	ENSBSLG00000019403 #24	ENSBSLG00000019209	ENSBSLG00000019086	ENSBSLG00000019035	ENSBSLG00000019018	ENSBSLG00000018986	ENSBSLG00000018966	ENSBSLG00000018955	ENSBSLG00000018941	ENSBSLG00000018925	ENSBSLG00000018794	ENSBSLG00000018503	ENSBSLG00000018495
Climbing perch	MODERN SPECIES	11	ENSATEG00000019959	ENSATEG00000019898	ENSATEG00000019815	ENSATEG00000019752	ENSATEG00000019703	ENSATEG00000019695	ENSATEG00000019666	ENSATEG00000019657	ENSATEG00000019608	ENSATEG00000028895	ENSATEG00000019582	ENSATEG00000028016	ENSATEG00000019553	ENSATEG00000019503	ENSATEG00000018899	ENSATEG00000018770 #22	ENSATEG00000025932 #24	ENSATEG00000026479	ENSATEG00000018700	ENSATEG00000027480	ENSATEG00000018674	ENSATEG00000018622	ENSATEG00000018608	ENSATEG00000018574	ENSATEG00000018561	ENSATEG00000026606	ENSATEG00000028515	ENSATEG00000018551	ENSATEG00000018546	ENSATEG00000018539	ENSATEG00000018513
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021957	ENSMAMG00000027276	ENSMAMG00000021955	ENSMAMG00000028539	ENSMAMG00000021952	SMIM11A (ENSMAMG00000026662)	ENSMAMG00000021948	ENSMAMG00000021945	ENSMAMG00000021938	ENSMAMG00000021933	ENSMAMG00000021932	ENSMAMG00000021930	ENSMAMG00000021928	ENSMAMG00000021916	ENSMAMG00000021912	ENSMAMG00000021910 #22	ENSMAMG00000021908 #24	ENSMAMG00000021907	ENSMAMG00000021906	ENSMAMG00000021899	ENSMAMG00000021893	ENSMAMG00000021892	ENSMAMG00000021889	ENSMAMG00000021794	ENSMAMG00000021790	ENSMAMG00000021787	ENSMAMG00000021762	ENSMAMG00000021735	cab39l (ENSMAMG00000021730)	cdadc1 (ENSMAMG00000021707)	rcbtb1 (ENSMAMG00000021704)
Carangaria	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000160883.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d	ENSGT00940000153309	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00940000157440.m.b
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01090000260005.a.a.a.a	ENSGT00940000160883.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d
Seriola	ANCESTRAL SPECIES	44	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.b.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163322.a.b.a.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163148.a.a.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01090000260005.a.a.a.a	ENSGT00940000165189	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d
Greater amberjack	MODERN SPECIES	180					ENSSDUG00000004169	GPR180 (ENSSDUG00000004179)	ENSSDUG00000004202	ENSSDUG00000004279	SLC5A3 (ENSSDUG00000004400)	ENSSDUG00000004411	ENSSDUG00000004441	ENSSDUG00000004453	fam184aa (ENSSDUG00000004468)	ENSSDUG00000004526	ENSSDUG00000004550	SATB2 (ENSSDUG00000004576) #22	ENSSDUG00000004624 #24	ENSSDUG00000004641	ENSSDUG00000004651	ENSSDUG00000004663	ENSSDUG00000004687	ENSSDUG00000004693	crygs3 (ENSSDUG00000004702)	etv5b (ENSSDUG00000004720)	ENSSDUG00000004732	ENSSDUG00000004743	ENSSDUG00000004758	SLC19A1 (ENSSDUG00000004780)	ENSSDUG00000004795	arpc2 (ENSSDUG00000004811)	ENSSDUG00000004843
Yellowtail amberjack	MODERN SPECIES	3005	kpnb3 (ENSSLDG00000002270)	SEMA5B (ENSSLDG00000002404)	ENSSLDG00000002452	ENSSLDG00000002510	ENSSLDG00000002608	GPR180 (ENSSLDG00000002631)	ENSSLDG00000002652	ENSSLDG00000002762	SLC5A3 (ENSSLDG00000002817)	ENSSLDG00000002866	ENSSLDG00000002879	fam184aa (ENSSLDG00000002894)	ENSSLDG00000003020	CRYGS (ENSSLDG00000003059)	ENSSLDG00000003168	SATB2 (ENSSLDG00000003207) #22	ENSSLDG00000003410 #24	ENSSLDG00000003549	ENSSLDG00000003582	ENSSLDG00000003603	ENSSLDG00000003623	ENSSLDG00000003635	crygs3 (ENSSLDG00000003656)	etv5b (ENSSLDG00000003677)	ENSSLDG00000003699	cyp4f3 (ENSSLDG00000003732)	ENSSLDG00000003934	SLC19A1 (ENSSLDG00000003950)	ENSSLDG00000003962	arpc2 (ENSSLDG00000003974)	ENSSLDG00000004043
Barramundi perch	MODERN SPECIES	165	kpnb3 (ENSLCAG00010019658)	SEMA5B (ENSLCAG00010019680)	ENSLCAG00010019817	ENSLCAG00010020233	GPR180 (ENSLCAG00010020239)	TGDS (ENSLCAG00010020243)	ENSLCAG00010020255	SLC5A3 (ENSLCAG00010020306)	ENSLCAG00010020315	ENSLCAG00010020325	ENSLCAG00010020330	ENSLCAG00010020336	fam184aa (ENSLCAG00010020344)	ENSLCAG00010020352	CRYGS (ENSLCAG00010020356)	SATB2 (ENSLCAG00010020360) #22	ENSLCAG00010020362 #24	crygm6 (ENSLCAG00010020364)	ENSLCAG00010020367	ENSLCAG00010020372	ENSLCAG00010020374	ENSLCAG00010020375	ENSLCAG00010020377	ENSLCAG00010020379	etv5b (ENSLCAG00010020381)	ENSLCAG00010020386	ENSLCAG00010020393	ENSLCAG00010020397	CYP4F8 (ENSLCAG00010020474)	SLC19A1 (ENSLCAG00010020663)	ENSLCAG00010020666
Pleuronectoidei	ANCESTRAL SPECIES	82						ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000164501.a.a.a.b	ENSGT00940000163322.a.a.b	ENSGT01030000234765	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b
Turbot	MODERN SPECIES	16	ENSSMAG00000034189	ENSSMAG00000011992	ENSSMAG00000012022	ENSSMAG00000012031	ENSSMAG00000012042	ENSSMAG00000012062	ENSSMAG00000012084	ENSSMAG00000012135	ENSSMAG00000012197	ENSSMAG00000012225	ENSSMAG00000012237	ENSSMAG00000012251	ENSSMAG00000012260	ENSSMAG00000012312	ENSSMAG00000012347	ENSSMAG00000012373 #22	ENSSMAG00000012396	ENSSMAG00000012470	ENSSMAG00000012587	ENSSMAG00000012593	ENSSMAG00000012481	ENSSMAG00000012617	ENSSMAG00000012717	ENSSMAG00000012754	ENSSMAG00000012768	ENSSMAG00000012818	ENSSMAG00000012862	ENSSMAG00000012948	ENSSMAG00000013115	ENSSMAG00000013130	ENSSMAG00000013147
Tiger tail seahorse	MODERN SPECIES	261	AOX1 (ENSHCOG00000008197) #12	arl4cb (ENSHCOG00000008233)	sh3bp4a (ENSHCOG00000008245)	ENSHCOG00000008248	ahr1b (ENSHCOG00000008459)	ENSHCOG00000008499	mfsd6a (ENSHCOG00000008521)	nab1a (ENSHCOG00000008544)	glsa (ENSHCOG00000008581)	stat1a (ENSHCOG00000008635)	mstna (ENSHCOG00000010987)	ENSHCOG00000011134	sumo1 (ENSHCOG00000011147)	MAP3K2 (ENSHCOG00000011184)	ENSHCOG00000011195	ENSHCOG00000011233 #22	AVPR2 (ENSHCOG00000011651)	idh3g (ENSHCOG00000011694)	fam3a (ENSHCOG00000011707)	ENSHCOG00000011731	phf8 (ENSHCOG00000011831)	ENSHCOG00000011889	ENSHCOG00000011911	l1cama (ENSHCOG00000012044)
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005004544	ENSMMDG00005004603	ccnt2b (ENSMMDG00005004749)	TMEM163 (ENSMMDG00005004755)	mgat5 (ENSMMDG00005004763)	clic5a (ENSMMDG00005004776)	enpp4 (ENSMMDG00005004918)	ENSMMDG00005004926	ENSMMDG00005004933	ENSMMDG00005004937	PLN (ENSMMDG00005004940)	fam184aa (ENSMMDG00005004948)	ENSMMDG00005004963	ENSMMDG00005005261	CRYGS (ENSMMDG00005005263)	SATB2 (ENSMMDG00005005281) #22	ENSMMDG00005005286	mob4 (ENSMMDG00005005291)	ENSMMDG00005005326	ENSMMDG00005005333	ENSMMDG00005005343	ENSMMDG00005005365	ENSMMDG00005005369	ENSMMDG00005005383	crygs3 (ENSMMDG00005005415)	cyp20a1 (ENSMMDG00005005425)	abi2b (ENSMMDG00005005463)	ENSMMDG00005005515	ENSMMDG00005005521	ENSMMDG00005005522	ENSMMDG00005005523
Cod	MODERN SPECIES	17	ENSGMOG00000031654	ENSGMOG00000027660	dph3 (ENSGMOG00000000148)	fhl2b (ENSGMOG00000000153)	ENSGMOG00000023932	ENSGMOG00000010334	ENSGMOG00000030866	KIF5C (ENSGMOG00000010363)	ENSGMOG00000031121	ORC4 (ENSGMOG00000010433)	ENSGMOG00000030552	ENSGMOG00000029181	ENSGMOG00000026483	ENSGMOG00000024247	ENSGMOG00000027507	ENSGMOG00000032613 #22	ENSGMOG00000026278	ENSGMOG00000003595	ENSGMOG00000008707	ENSGMOG00000030864	ENSGMOG00000024450	ENSGMOG00000030719	ENSGMOG00000009773	abcc4 (ENSGMOG00000029209)	ENSGMOG00000002030	ENSGMOG00000026603	ENSGMOG00000017247	dzip1 (ENSGMOG00000017199)	ENSGMOG00000029101	ENSGMOG00000024621	ENSGMOG00000025999
Protacanthopterygii	ANCESTRAL SPECIES	125	ENSGT00640000091496	ENSGT00940000156597.a.b.b.a	ENSGT00940000157652	ENSGT01030000234570.d.a.p	ENSGT00530000063186.b.b	ENSGT00940000154695.d.b.b	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000162639.b	ENSGT00940000165242.f	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163148.a.a.b.o.a	ENSGT00940000163148.a.a.b.p	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000158202	ENSGT00940000155390	ENSGT00940000155041	ENSGT00390000009940
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00950000182908.D.p	ENSGT00940000156307.b.c	ENSGT00940000169129	ENSGT00940000177114	ENSGT00530000063186.b.b.p	ENSGT00940000154695.d.b.b.b.b	ENSGT00940000159224.b.a	ENSGT00940000165586.b	ENSGT00940000155235.k.b.c	ENSGT00940000155408.o.b	ENSGT00940000157249.o	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000162639.b	ENSGT00940000165242.f	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.e #22	ENSGT00530000063480.a #24	ENSGT01050000244956.b.v	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b.a	ENSGT00940000163322.a.b.a.b.e	ENSGT00940000163148.a.b.b.a.a.a.i	ENSGT00940000163494.a.b.a.b.a	ENSGT00940000163148.a.b.b.b.d.a.a.a.b	ENSGT00940000163148.a.b.b.b.d.a.a.a.a.a	ENSGT00940000163322.a.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c.b	ENSGT00940000156768.x.a.a
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000177114	ENSGT00940000156597.a.b.b.a.a.a.a	ENSGT00940000157652.j.b	ENSGT01030000234570.d.a.p.a	ENSGT00530000063186.b.b.p	ENSGT00940000154695.d.b.b.b.b	ENSGT00940000159224.b.a	ENSGT00940000165586.b	ENSGT00940000155235.k.b.c	ENSGT00940000155408.o.b	ENSGT00940000157249.o	ENSGT00940000154453.a.b.a.a.b.a	ENSGT00940000162639.b	ENSGT00940000165242.f	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.e #22	ENSGT00530000063480.a #24	ENSGT01050000244956.b.v	ENSGT00940000163322.b	ENSGT00940000164501.b	ENSGT00940000163494.a.b.b	ENSGT00940000164501.a.a.b.b.a	ENSGT00940000163322.a.b.a.b.e	ENSGT00940000163148.a.b.b.a.a.a.i	ENSGT00940000163494.a.b.a.b.a	ENSGT00940000163148.a.b.b.b.d.a.a.a.b	ENSGT00940000163148.a.b.b.b.d.a.a.a.a.a	ENSGT00940000163322.a.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c.b	ENSGT00940000156768.x.a.a
Oncorhynchus	ANCESTRAL SPECIES	108	ENSGT01030000234570.d.a.p.b	ENSGT00530000063186.b.b.o.a	ENSGT01030000234570.d.a.p.a	ENSGT00530000063186.b.b.p	ENSGT00940000154695.d.b.b.a	ENSGT00940000159224.b.b	ENSGT00940000159224.b.a	ENSGT00940000165586.b	ENSGT00940000155235.k.b.d.a	ENSGT00940000155408.o.b.h	ENSGT00940000157249.o	ENSGT00940000154453.a.b.a.a.b.a	ENSGT00940000162639.b	ENSGT00940000165242.f	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.e #22	ENSGT00530000063480.a #24	ENSGT01050000244956.b.v
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000012101	lancl1 (ENSOMYG00000012047)	ENSOMYG00000072101	ENSOMYG00000063731	si:ch211-93g23.2 (ENSOMYG00000065016)	ENSOMYG00000059853	klf7a (ENSOMYG00000054307)	ENSOMYG00000061502	ENSOMYG00000005211	ENSOMYG00000005188	ENSOMYG00000022196	ENSOMYG00000021679	ENSOMYG00000021672	ENSOMYG00000021657	ENSOMYG00000064332	ENSOMYG00000073057 #22	ENSOMYG00000068471	ENSOMYG00000021647 #24	ENSOMYG00000021632	ENSOMYG00000021612	ENSOMYG00000021588	ENSOMYG00000021570	ENSOMYG00000067952	ENSOMYG00000021525	ENSOMYG00000021544	ENSOMYG00000021513	ENSOMYG00000021506	ENSOMYG00000028872	ENSOMYG00000070684	ENSOMYG00000011681	ENSOMYG00000048159
Rainbow trout	MODERN SPECIES	28	lancl1 (ENSOMYG00000012035)	ENSOMYG00000066335	ERBB4 (ENSOMYG00000012021)	ENSOMYG00000077604	ENSOMYG00000011995	si:ch211-93g23.2 (ENSOMYG00000011962)	ENSOMYG00000051366	klf7a (ENSOMYG00000034277)	ENSOMYG00000063496	ENSOMYG00000074487	ENSOMYG00000048668	ENSOMYG00000069054	ENSOMYG00000054821	ENSOMYG00000050447	ENSOMYG00000059606	ENSOMYG00000073804 #22	ENSOMYG00000011945 #24	ENSOMYG00000011923	ENSOMYG00000011900	ENSOMYG00000011888	ENSOMYG00000011882	ENSOMYG00000011836	ENSOMYG00000039599	ENSOMYG00000051632	ENSOMYG00000011870	ENSOMYG00000011847	ENSOMYG00000011828	ENSOMYG00000011822	ENSOMYG00000011807	ENSOMYG00000031244	ENSOMYG00000066009
Oncorhynchus_a	ANCESTRAL SPECIES	155															ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.e #22	ENSGT00530000063480.a #24	ENSGT00940000164501.a.a.b.a.d	ENSGT00940000163148.a.a.b.o.a.e	ENSGT00940000163148.a.a.b.p.b	ENSGT00940000163148.a.a.b.o.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.b.c.a	ENSGT00940000156712.a	ENSGT00940000164538.c.a	ENSGT00940000164538.c.b	ENSGT00940000158202.t	ENSGT01040000240385.A.b.b.a.a.a.b.a.a.a.b.b
Coho salmon	MODERN SPECIES	34	UNC80 (ENSOKIG00005050319)	ENSOKIG00005050332	acadl (ENSOKIG00005050360)	mylz3 (ENSOKIG00005050377)	lancl1 (ENSOKIG00005050385)	FZD5 (ENSOKIG00005050389)	ENSOKIG00005050399	mettl21a (ENSOKIG00005050416)	ENSOKIG00005050418	CREB1 (ENSOKIG00005050421)	klf7a (ENSOKIG00005039931)	ENSOKIG00005039940	RAMP1 (ENSOKIG00005039951)	ERBB4 (ENSOKIG00005040009)	CRYGS (ENSOKIG00005040448)	SATB2 (ENSOKIG00005040506) #22	ENSOKIG00005040574 #24	ENSOKIG00005040641	ENSOKIG00005040689	ENSOKIG00005040709	ENSOKIG00005040750	ENSOKIG00005040843 #24	ENSOKIG00005040878	ENSOKIG00005040943	ENSOKIG00005040968	ENSOKIG00005040997	ENSOKIG00005041006	ENSOKIG00005041030	ENSOKIG00005041037	ENSOKIG00005041050	etv5b (ENSOKIG00005041122)
Salmo	ANCESTRAL SPECIES	133		ENSGT00940000156597.a.b.b.a.a.a.a	ENSGT00940000157652.j.b	ENSGT01030000234570.d.a.p.a	ENSGT00530000063186.b.b.p	ENSGT00940000154695.d.b.b.b.b	ENSGT00940000159224.b.a.b	ENSGT00940000165586.b.c	ENSGT00940000155235.k.b.c	ENSGT00940000155408.o.b.e	ENSGT00940000157249.p	ENSGT00940000154453.a.b.a.a.b.b	ENSGT00940000162639.b.d	ENSGT00940000165242.f.b	ENSGT00940000160342.g.a	ENSGT00390000008096.B.e.b.e #22	ENSGT00530000063480.a #24	ENSGT01050000244956.b.v.d	ENSGT00940000163322.b.a	ENSGT00940000163494.a.b.a.a	ENSGT00940000163148.a.a.a.b	ENSGT00940000163148.a.a.b.o.a	ENSGT00940000163148.a.a.b.p.b	ENSGT00940000163148.a.a.b.o.b	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163494.a.a.c.a.d.f	ENSGT00940000165279.d.f
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000083293	ACADL (ENSSSAG00000041671)	mylz3 (ENSSSAG00000041634)	lancl1 (ENSSSAG00000042677)	ERBB4 (ENSSSAG00000114381)	ENSSSAG00000090719	si:ch211-93g23.2 (ENSSSAG00000112406)	klf7a (ENSSSAG00000106149)	CREB1 (ENSSSAG00000116482)	ENSSSAG00000042988	ENSSSAG00000087876	ENSSSAG00000052221	FZD5 (ENSSSAG00000052281)	ENSSSAG00000099186	ENSSSAG00000082555	ENSSSAG00000118742 #22	ENSSSAG00000006128 #24	ENSSSAG00000113998	ENSSSAG00000006112	ENSSSAG00000120566	ENSSSAG00000006101	ENSSSAG00000006056	ENSSSAG00000084786	ENSSSAG00000083019	ENSSSAG00000084372	ENSSSAG00000015315	ENSSSAG00000118241	ENSSSAG00000099184	ENSSSAG00000107167	ENSSSAG00000086636	ENSSSAG00000097565
Atlantic salmon	MODERN SPECIES	8	ACADL (ENSSSAG00000041811)	mylz3 (ENSSSAG00000041766)	LANCL1 (ENSSSAG00000041585)	ERBB4 (ENSSSAG00000099566)	ENSSSAG00000102507	ENSSSAG00000117127	ENSSSAG00000018434	si:ch211-93g23.2 (ENSSSAG00000094758)	ENSSSAG00000118230	CREB1 (ENSSSAG00000111085)	ENSSSAG00000042982	ENSSSAG00000008005	ENSSSAG00000042930	FZD5 (ENSSSAG00000083692)	ENSSSAG00000106043	ENSSSAG00000042860 #22	ENSSSAG00000039864 #24	ENSSSAG00000040919	ENSSSAG00000006105	ENSSSAG00000103267	ENSSSAG00000042769	ENSSSAG00000108785	ENSSSAG00000006025	ENSSSAG00000090950	ENSSSAG00000087017	ENSSSAG00000095246	ENSSSAG00000055563	ENSSSAG00000041541	ENSSSAG00000020579	ENSSSAG00000090791	ENSSSAG00000018593
River trout	DUPLICATION
River trout	MODERN SPECIES	36	UNC80 (ENSSTUG00000026834)	mylz3 (ENSSTUG00000026860)	lancl1 (ENSSTUG00000026873)	ENSSTUG00000026883	ENSSTUG00000026900	RAMP1 (ENSSTUG00000026911)	ENSSTUG00000026915	klf7a (ENSSTUG00000026921)	CREB1 (ENSSTUG00000026933)	mettl21a (ENSSTUG00000026968)	ENSSTUG00000026978	ENSSTUG00000026985	fzd5 (ENSSTUG00000027021)	ENSSTUG00000027029	CRYGS (ENSSTUG00000027200)	SATB2 (ENSSTUG00000027256) #22	ENSSTUG00000027271 #24	ENSSTUG00000027311	mob4 (ENSSTUG00000027314)	ENSSTUG00000027333	crygm6 (ENSSTUG00000027354)	ENSSTUG00000027366	ENSSTUG00000027415	ENSSTUG00000027417	ENSSTUG00000027422	crygs3 (ENSSTUG00000027428)	etv5b (ENSSTUG00000027441)	ENSSTUG00000027552	ENSSTUG00000030902	SEMA5B (ENSSTUG00000030923)	ENSSTUG00000031671
River trout	MODERN SPECIES	32	ENSSTUG00000040481	acadl (ENSSTUG00000040211)	ENSSTUG00000040179	mylz3 (ENSSTUG00000040144)	lancl1 (ENSSTUG00000040109)	ENSSTUG00000040105	RAMP1 (ENSSTUG00000040097)	si:ch211-93g23.2 (ENSSTUG00000040090)	klf7a (ENSSTUG00000040086)	CREB1 (ENSSTUG00000040044)	ENSSTUG00000040023	mettl21a (ENSSTUG00000040017)	ENSSTUG00000039996	fzd5 (ENSSTUG00000039990)	ENSSTUG00000039912	SATB2 (ENSSTUG00000039861) #22	ENSSTUG00000039828 #24	mob4 (ENSSTUG00000039816)	ENSSTUG00000039773	crygm6 (ENSSTUG00000039765)	ENSSTUG00000039707	ENSSTUG00000039704	ENSSTUG00000039692	ENSSTUG00000039677	crygs3 (ENSSTUG00000039658)	ENSSTUG00000039654	ENSSTUG00000039653	etv5b (ENSSTUG00000039613)	ENSSTUG00000039249	SEMA5B (ENSSTUG00000038175)	ENSSTUG00000038097
Huchen	MODERN SPECIES	12386																ENSHHUG00000015666 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000008096.B.e.b.f #22
Huchen	MODERN SPECIES	6298														CRYGS (ENSHHUG00000022573)	ENSHHUG00000022571	ENSHHUG00000022569 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000008096.B.e.b.f #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000008096.B.e.b.f #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000008096.B.e.b.f #22
Coho salmon	MODERN SPECIES	272															CRYGS (ENSOKIG00005044291)	SATB2 (ENSOKIG00005044302) #22
Northern pike	MODERN SPECIES	21	ENSELUG00000002609	acadl (ENSELUG00000002558)	mylz3 (ENSELUG00000033756)	lancl1 (ENSELUG00000002523)	erbb4a (ENSELUG00000002509)	RAMP1 (ENSELUG00000002486)	si:ch211-93g23.2 (ENSELUG00000002477)	klf7a (ENSELUG00000002465)	CREB1 (ENSELUG00000002454)	mettl21a (ENSELUG00000002443)	ENSELUG00000026868	ENSELUG00000002436	fzd5 (ENSELUG00000002424)	ENSELUG00000002404	CRYGS (ENSELUG00000028699)	SATB2 (ENSELUG00000002340) #22	ENSELUG00000002317 #24	mob4 (ENSELUG00000026640)	ENSELUG00000002297	ENSELUG00000002293	crygm6 (ENSELUG00000002289)	ENSELUG00000002366	ENSELUG00000002284	ENSELUG00000002279	ENSELUG00000002275	ENSELUG00000002274	ENSELUG00000002268	ENSELUG00000002266	crygs3 (ENSELUG00000002262)	etv5b (ENSELUG00000002259)	ENSELUG00000002249
Otomorpha	ANCESTRAL SPECIES	441														ENSGT00940000157249	ENSGT00940000160342.f	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT01050000244956.b.w.b	ENSGT00940000164501.a.a.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.b	ENSGT00950000183003.a.a.b.c.a
Clupeiformes	ANCESTRAL SPECIES	430															ENSGT00940000160342.f	ENSGT00390000008096.B.e.b #22	ENSGT00530000063480.a #24	ENSGT01050000244956.b.x	ENSGT00940000164501.a.a.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163148.a.a	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.b	ENSGT00950000183003.a.a.b.c.a
Atlantic herring	MODERN SPECIES	13	ednrba (ENSCHAG00000023082)	ENSCHAG00000023073	sugt1 (ENSCHAG00000023067)	CNMD (ENSCHAG00000023062)	PCDH8 (ENSCHAG00000023059)	ENSCHAG00000023057	ENSCHAG00000023055	ENSCHAG00000023041	ENSCHAG00000023032	ENSCHAG00000023020	ENSCHAG00000023016	ENSCHAG00000023010	FGF14 (ENSCHAG00000022993)	mettl21a (ENSCHAG00000022988)	crygs1 (ENSCHAG00000022974)	SATB2 (ENSCHAG00000022933) #22	BOLL (ENSCHAG00000022917) #24	MOB4 (ENSCHAG00000022903)	hspd1 (ENSCHAG00000022870) ##28	ENSCHAG00000022857	crygm7 (ENSCHAG00000022845)	ENSCHAG00000022833	ENSCHAG00000022819	ENSCHAG00000022727	ENSCHAG00000022676	sowahcb (ENSCHAG00000022662)	septin10 (ENSCHAG00000021327)	cep70 (ENSCHAG00000021175)	ADARB1 (ENSCHAG00000021085)	slx9 (ENSCHAG00000021057)	ENSCHAG00000021035
Denticle herring	MODERN SPECIES	15	MAN1C1 (ENSDCDG00000001993)	ENSDCDG00000001872	ENSDCDG00000001871	ENSDCDG00000001868	lim2.5 (ENSDCDG00000001865)	ENSDCDG00000001862	zgc:172122 (ENSDCDG00000001857)	tpt1 (ENSDCDG00000001847)	gtf2f2a (ENSDCDG00000001832)	gpalpp1 (ENSDCDG00000001831)	tra2b (ENSDCDG00000001824)	igf2bp2b (ENSDCDG00000001651)	tmem41ab (ENSDCDG00000001591)	si:dkey-22o12.2 (ENSDCDG00000001584)	vps8 (ENSDCDG00000001381)	SATB2 (ENSDCDG00000001343) #22	ENSDCDG00000001341 #24	MOB4 (ENSDCDG00000001336)	HSPD1 (ENSDCDG00000001331) ##28	ENSDCDG00000001326	ENSDCDG00000001325	crygmxl1 (ENSDCDG00000001315)	ENSDCDG00000001311	ENSDCDG00000001296	ENSDCDG00000001276	ENSDCDG00000001270	SOWAHC (ENSDCDG00000001263)	septin10 (ENSDCDG00000000991)	cep70 (ENSDCDG00000000891)	ORC2 (ENSDCDG00000000865)	ENSDCDG00000000854
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00390000008096.B.f #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00390000008096.B.f #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00390000008096.B.f #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000008096.B.f #22
Huchen	MODERN SPECIES	586	mios (ENSHHUG00000028454)	col28a1b (ENSHHUG00000028429)	ENSHHUG00000028412	septin7b (ENSHHUG00000026924)	ENSHHUG00000026903	ENSHHUG00000026901	ENSHHUG00000026897	ENSHHUG00000026723	nr1d2a (ENSHHUG00000026713)	ENSHHUG00000026603	ENSHHUG00000026588	rab5ab (ENSHHUG00000026537)	efhb (ENSHHUG00000026520)	si:dkey-82o10.4 (ENSHHUG00000026512) #17	ENSHHUG00000026510	ENSHHUG00000026509 #22	ENSHHUG00000026506 ##22
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1561	dnajb11 (ENSCMIG00000013232)	CDK3 (ENSCMIG00000013167)	vps16 (ENSCMIG00000013082)	rab5b (ENSCMIG00000013050)	dbr1 (ENSCMIG00000013048)	armc8 (ENSCMIG00000012905)	ENSCMIG00000012847	ENSCMIG00000012845	ENSCMIG00000012842	KCTD18 (ENSCMIG00000012839) #15	ENSCMIG00000012834 #16	ENSCMIG00000012828 #17	tyw5 (ENSCMIG00000012827) #18	zgc:153521 (ENSCMIG00000012823) #19	ftcdnl1 (ENSCMIG00000012821) #20	satb2 (ENSCMIG00000012810) #22	PLCL1 (ENSCMIG00000012806) #23	BOLL (ENSCMIG00000012794) #24	RFTN2 (ENSCMIG00000012791) #26	hspe1 (ENSCMIG00000012789) #27	hspd1 (ENSCMIG00000012777) #28	coq10b (ENSCMIG00000012773) #29	SF3B1 (ENSCMIG00000012746) #30	COL6A2 (ENSCMIG00000012731)	COL6A1 (ENSCMIG00000012721)	pfklb (ENSCMIG00000012575)	klf7b (ENSCMIG00000012503)	ENSCMIG00000012501	eef1b2 (ENSCMIG00000012489)	ndufs1 (ENSCMIG00000012456)	ino80db (ENSCMIG00000012428)
Elephant shark	MODERN SPECIES	1541	CAVIN4 (ENSCMIG00000018828)	ENSCMIG00000018864	ift57 (ENSCMIG00000018926)	ENSCMIG00000018927	abitram (ENSCMIG00000018929)	ctnnal1 (ENSCMIG00000018930)	ENSCMIG00000018938 #14	KAT2B (ENSCMIG00000018949)	ENSCMIG00000018967	ENSCMIG00000018968	ENSCMIG00000018971	ENSCMIG00000018977	ENSCMIG00000018978	KCNH8 (ENSCMIG00000018981)	ENSCMIG00000018984	ENSCMIG00000018985 #22	tbc1d5 (ENSCMIG00000019001)	PLCL2 (ENSCMIG00000019043)	dazl (ENSCMIG00000019050) ##24	ENSCMIG00000019054 ##26	oxnad1 (ENSCMIG00000019055)	ENSCMIG00000019059	ENSCMIG00000019061	ANKRD28 (ENSCMIG00000019083)	btd (ENSCMIG00000019124)	hacl1 (ENSCMIG00000019180)	hecw1b (ENSCMIG00000019265)	stk17a (ENSCMIG00000019286)	ENSCMIG00000019287	blvra (ENSCMIG00000019288)	ENSCMIG00000019291
Cyclostomata	ANCESTRAL SPECIES	272															ENSGT00390000005581.b #20	ENSGT00390000008096.B #22	ENSGT00530000063609 #26
Lamprey	MODERN SPECIES	124															ENSPMAG00000005344	satb2 (ENSPMAG00000005314) #22
Hagfish	MODERN SPECIES	276					ENSEBUG00000005749	ENSEBUG00000013674	ENSEBUG00000005830	ENSEBUG00000003940	ENSEBUG00000011110	ENSEBUG00000009077	ENSEBUG00000012036	mcrs1 (ENSEBUG00000010094)	ENSEBUG00000007218	ENSEBUG00000011202 #16	ENSEBUG00000008643 #20	satb2 (ENSEBUG00000002227) #22	ENSEBUG00000001603	ENSEBUG00000008648 #26	cs (ENSEBUG00000007413)	hspd1 (ENSEBUG00000015722) #28	hspe1 (ENSEBUG00000009763) #27	ENSEBUG00000008704	ENSEBUG00000004874	ENSEBUG00000012466	ENSEBUG00000013321	ENSEBUG00000010091	ENSEBUG00000010924
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000008096.B #22
Fruitfly	MODERN SPECIES	17	Fbxo42 (FBgn0034704)	CG11170 (FBgn0034705)	CG11275 (FBgn0034706)	MED16 (FBgn0034707)	Vps35 (FBgn0034708)	Swim (FBgn0034709)	Alp7 (FBgn0034710)	Alp2 (FBgn0283480)	Alp8 (FBgn0034712)	CG11291 (FBgn0034713)	ari-2 (FBgn0025186)	CG30278 (FBgn0050278)	Oatp58Da (FBgn0050277)	Oatp58Db (FBgn0034715)	Oatp58Dc (FBgn0034716)	dve (FBgn0020307) #22	CG5819 (FBgn0034717)	wdp (FBgn0034718)	Gp150 (FBgn0013272)	CG34207 (FBgn0085236)	T3dh (FBgn0017482)	pgc (FBgn0016053)	CG34208 (FBgn0085237)	Liprin-gamma (FBgn0034720)	CG11298 (FBgn0034721)	Rtf1 (FBgn0034722)	wrapper (FBgn0025878)	CG13506 (FBgn0034723)	babos (FBgn0034724)	CG6044 (FBgn0034725)	VepD (FBgn0053200)
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000008096.C ##22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000008096.C ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000008096.C ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00390000008096.C ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00390000008096.C ##22
Actinopterygii	ANCESTRAL SPECIES	2	ENSGT00940000155168.a.b	ENSGT00910000144184	ENSGT00940000171014	ENSGT00940000159705	ENSGT00940000156415	ENSGT00940000165358	ENSGT00940000165550.a.b	ENSGT00940000155985	ENSGT00940000160242	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.C ##22	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b ##24	ENSGT00530000063609.b ##26	ENSGT00390000004280	ENSGT00390000009313	ENSGT00940000160808	ENSGT00950000182908.C	ENSGT00390000013823.a	ENSGT00940000156802	ENSGT00940000157248	ENSGT00940000157288	ENSGT01000000221212	ENSGT00940000157858	ENSGT00390000013474.b.b
Neopterygii	ANCESTRAL SPECIES	34	ENSGT00940000156196	ENSGT00940000156809.b	ENSGT00940000155168.a.b	ENSGT00910000144184	ENSGT00940000171014	ENSGT00940000159705	ENSGT00940000156415	ENSGT00940000155985	ENSGT00940000160242	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.C ##22	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b ##24	ENSGT00530000063609.b ##26	ENSGT00390000004280
Osteoglossocephalai	ANCESTRAL SPECIES	37	ENSGT00940000157921	ENSGT00940000156196.b	ENSGT00940000156809.b	ENSGT00940000155168.a.b	ENSGT00940000171014	ENSGT00910000144184	ENSGT00940000159705	ENSGT00940000165550.a.a	ENSGT00940000160242.b	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000176137	ENSGT00940000156869	ENSGT00390000008096.C ##22	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	27	ENSGT00390000015038	ENSGT00940000163195.A.c	ENSGT00940000161647	ENSGT01090000260131	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Otomorpha	ANCESTRAL SPECIES	8	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000161647	ENSGT01090000260131	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000155168.a.a	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313.ib	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Clupeiformes	ANCESTRAL SPECIES	79										ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313.ib	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e.d	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567
Atlantic herring	MODERN SPECIES	2	pon1 (ENSCHAG00000012391)	ENSCHAG00000012309	dync1i1 (ENSCHAG00000008225)	ZFAT (ENSCHAG00000008020)	rbfa (ENSCHAG00000007981)	adnp2a (ENSCHAG00000007962)	pard6ga (ENSCHAG00000007948)	zgc:136493 (ENSCHAG00000007941)	JARID2 (ENSCHAG00000007527)	dtnbp1a (ENSCHAG00000007452)	ENSCHAG00000007434	ENSCHAG00000007407	ENSCHAG00000007395	UBE2E2 (ENSCHAG00000007375)	si:dkey-82o10.4 (ENSCHAG00000007368) #17	ENSCHAG00000007288 ##22	ENSCHAG00000007270	PLCL2 (ENSCHAG00000007265)	ENSCHAG00000007216	ENSCHAG00000007206 ##26	ENSCHAG00000007176	BRD2 (ENSCHAG00000006857)	ENSCHAG00000006649	pbx2 (ENSCHAG00000006602)	ENSCHAG00000006588	ENSCHAG00000006550	rgl2 (ENSCHAG00000006474)	ENSCHAG00000006133	SYNGAP1 (ENSCHAG00000005164)	smg5 (ENSCHAG00000002837)	PAQR6 (ENSCHAG00000002634)
Denticle herring	MODERN SPECIES	15	ZFAT (ENSDCDG00000018217)	rbfa (ENSDCDG00000018216)	adnp2a (ENSDCDG00000018214)	zgc:136493 (ENSDCDG00000018211)	JARID2 (ENSDCDG00000017058)	dtnbp1a (ENSDCDG00000017002)	mylipb (ENSDCDG00000017001)	ATXN1 (ENSDCDG00000016999)	ENSDCDG00000016998	ENSDCDG00000016996	septin7b (ENSDCDG00000015781)	nr1d2a (ENSDCDG00000015704)	ube2e1 (ENSDCDG00000015667)	ZNF385D (ENSDCDG00000015654)	rab5ab (ENSDCDG00000015630)	ENSDCDG00000015616 ##22	PLCL2 (ENSDCDG00000015602)	ENSDCDG00000015435	ENSDCDG00000015381	ENSDCDG00000015373	ENSDCDG00000015367 ##26	ENSDCDG00000015353	BRD2 (ENSDCDG00000015347)	ENSDCDG00000015303	ENSDCDG00000015280	pbx2 (ENSDCDG00000015258)	ENSDCDG00000015247	ENSDCDG00000015240	rgl2 (ENSDCDG00000015216)	PHF1 (ENSDCDG00000015004)	SYNGAP1 (ENSDCDG00000014494)
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000155256.c	ENSGT00390000012224	ENSGT00920000150761	ENSGT01100000263551.b.b.a	ENSGT00990000203527.a.a.a.e.a	ENSGT00990000203527.a.a.a.f	ENSGT00940000160467	ENSGT00390000013999	ENSGT00940000160704.a.a	ENSGT00390000009936	ENSGT00940000167735.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a	ENSGT00990000203527.a.a.b	ENSGT01100000263535.b.a.b.bb	ENSGT00940000176137	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313.ib.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b	ENSGT00390000018094.l
Characiphysae	ANCESTRAL SPECIES	37	ENSGT00390000009936	ENSGT01100000263551.b.b.a.f	ENSGT00990000203527.a.a.a.e.a	ENSGT00990000203527.a.a.a.f	ENSGT01100000263535.b.a.b.ab.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a	ENSGT00990000203527.a.a.b	ENSGT01100000263535.b.a.b.bb	ENSGT00940000161037	ENSGT00940000155168.a.a	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313.ib.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b.e.a	ENSGT00390000018094.l	ENSGT00920000149145
Channel catfish	MODERN SPECIES	15	Iglon5 (ENSIPUG00000023269)	hamp (ENSIPUG00000023275)	usf2 (ENSIPUG00000023283)	ETFB (ENSIPUG00000023288)	vsig10l (ENSIPUG00000023300)	lim2 (ENSIPUG00000023306)	ENSIPUG00000023307	ENSIPUG00000023311	ENSIPUG00000023320	nek10 (ENSIPUG00000023337)	Nr1d2 (ENSIPUG00000023370)	ube2e2 (ENSIPUG00000023378)	znf385d (ENSIPUG00000023386)	rab5ab (ENSIPUG00000023392)	efhb (ENSIPUG00000023422)	satb1 (ENSIPUG00000023428) ##22	ENSIPUG00000023470	plcl2 (ENSIPUG00000005047)	ENSIPUG00000005071	RFTN1 (ENSIPUG00000005084) ##26	VMO1 (ENSIPUG00000005135)	BRD2 (ENSIPUG00000005161)	ABCB2 (ENSIPUG00000005210)	pbx2 (ENSIPUG00000005246)	ENSIPUG00000005288	ext1a (ENSIPUG00000005297)	rad21a (ENSIPUG00000005316)	eif3ha (ENSIPUG00000005370)	CSMD3 (ENSIPUG00000005406)	CTHRC1 (ENSIPUG00000005595)	slc25a32 (ENSIPUG00000005619)
Characiphysae_b	ANCESTRAL SPECIES	37									ENSGT00940000161037	ENSGT00940000155168.a.a	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313.ib.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b.e.a	ENSGT00390000018094.l	ENSGT00920000149145
Electric eel	MODERN SPECIES	182										NEK10 (ENSEEEG00000002522)	nr1d2a (ENSEEEG00000002541)	ube2e2 (ENSEEEG00000002544)	ZNF385D (ENSEEEG00000002547)	rab5ab (ENSEEEG00000002562)	efhb (ENSEEEG00000002592)	ENSEEEG00000002600 ##22	PLCL2 (ENSEEEG00000002606)	ENSEEEG00000002642	ENSEEEG00000002981 ##26	ENSEEEG00000002985	brd2b (ENSEEEG00000002992)	ENSEEEG00000002995	pbx2 (ENSEEEG00000003007)	ENSEEEG00000003010	ext1a (ENSEEEG00000003012)	rad21a (ENSEEEG00000003022)	EIF3H (ENSEEEG00000003063)	CSMD3 (ENSEEEG00000003272)	ENSEEEG00000003326	CTHRC1 (ENSEEEG00000003327)	slc25a32b (ENSEEEG00000003328)
Characoidei	ANCESTRAL SPECIES	34												ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313.ib.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b.e.a	ENSGT00390000018094.l	ENSGT00920000149145
Mexicana tetra	MODERN SPECIES	9	CCR8 (ENSAMXG00000002397)	ENSAMXG00000033313	CCR8 (ENSAMXG00000043061)	ENSAMXG00000002198	ENSAMXG00000030528	ago1 (ENSAMXG00000001917)	ENSAMXG00000039413	dhdds (ENSAMXG00000001697)	hmgn2 (ENSAMXG00000032165)	C1orf232 (ENSAMXG00000038974)	fam110d (ENSAMXG00000003113)	SLC9A1 (ENSAMXG00000015012)	ZNF385D (ENSAMXG00000036149)	rab5ab (ENSAMXG00000035919)	efhb (ENSAMXG00000015119)	ENSAMXG00000043380 ##22	PLCL2 (ENSAMXG00000025896)	ENSAMXG00000031919	ENSAMXG00000043461	ENSAMXG00000036168 ##26	ENSAMXG00000033156	ENSAMXG00000017090	brd2b (ENSAMXG00000040055)	ENSAMXG00000017074	ENSAMXG00000017049	pbx2 (ENSAMXG00000017025)	ext1a (ENSAMXG00000016992)	rad21a (ENSAMXG00000016960)	eif3ha (ENSAMXG00000016937)	CSMD3 (ENSAMXG00000036946)	CTHRC1 (ENSAMXG00000039302)
Red-bellied piranha	MODERN SPECIES	302												ZNF385D (ENSPNAG00000009509)	rab5ab (ENSPNAG00000009496)	efhb (ENSPNAG00000001316)	si:dkey-82o10.4 (ENSPNAG00000009393) #17	ENSPNAG00000029692 ##22	PLCL2 (ENSPNAG00000029597)	ENSPNAG00000029548	ENSPNAG00000004609 ##26	ENSPNAG00000005402	ENSPNAG00000029458	brd2b (ENSPNAG00000029401)	ENSPNAG00000004990	ENSPNAG00000028983	pbx2 (ENSPNAG00000028911)	ENSPNAG00000028867
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	25	ENSGT00990000203527.a.a.a.f	ENSGT00940000160467	ENSGT00390000013999	ENSGT00940000160704.a.a	ENSGT00390000009936	ENSGT00940000167735.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a	ENSGT00990000203527.a.a.b	ENSGT00940000161037	ENSGT00940000155168.a.a	ENSGT01070000256195	ENSGT00940000160242.a	ENSGT00940000154337.a.a.d	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b	ENSGT00390000018094.l	ENSGT00920000149145
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	84	ENSGT00940000160467.e	ENSGT00390000013999.f	ENSGT00940000160704.a.a.d	ENSGT00390000009936.m	ENSGT00940000167735.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.b	ENSGT00990000203527.a.a.b.d	ENSGT00940000161037	ENSGT00940000155168.a.a.a	ENSGT00990000203527.a.a.b.c.a.b	ENSGT00940000155168.a.a.b	ENSGT00940000165358	ENSGT00940000160242.a.a	ENSGT00940000154337.a.a.c	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a.a.a ##22	ENSGT00940000155660.b.e	ENSGT00940000156439.d	ENSGT00530000063609.b.w.b ##26	ENSGT00940000161847.b.b.a	ENSGT00940000153385.b.a.b.fd.b.c	ENSGT00940000159023.w	ENSGT00980000198621	ENSGT00940000166527.d	ENSGT00940000155321.d.a.o.a	ENSGT00940000154655.a.i.a.a	ENSGT00730000111042.`b.a	ENSGT00940000155549.a.b.c	ENSGT00390000018094.l.a	ENSGT00920000149145.m.a	ENSGT00940000154222.d.a.k
Goldfish	MODERN SPECIES	7	ENSCARG00000019203	ENSCARG00000019206	iglon5 (ENSCARG00000019211)	ENSCARG00000019277	ENSCARG00000019285	etfb (ENSCARG00000019298)	ENSCARG00000019305	lim2.5 (ENSCARG00000019313)	ENSCARG00000019317	NEK10 (ENSCARG00000019329)	nr1d2a (ENSCARG00000019356)	ube2e2 (ENSCARG00000019368)	ZNF385D (ENSCARG00000019375)	RAB5A (ENSCARG00000019389)	ENSCARG00000019416	ENSCARG00000019427 ##22	PLCL2 (ENSCARG00000019453)	ENSCARG00000019495	ENSCARG00000020148 ##26	ENSCARG00000020159	ENSCARG00000020164	brd2b (ENSCARG00000020170)	TAP1 (ENSCARG00000020234)	pbx2 (ENSCARG00000020338)	ENSCARG00000020353	ENSCARG00000020361	ext1a (ENSCARG00000020369)	rad21a (ENSCARG00000020411)	eif3ha (ENSCARG00000020453)	CSMD3 (ENSCARG00000020568)	CTHRC1 (ENSCARG00000020857)
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT00940000155256.d.a.b.b	ENSGT00990000203527.a.a.a.e.a.h.a	ENSGT00990000203527.a.a.a.e.a.g.a	ENSGT00990000203527.a.a.a.f.n	ENSGT00940000160467.f.a	ENSGT00940000160467.e	ENSGT00390000013999.f	ENSGT00940000160704.a.a.c.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.b	ENSGT00990000203527.a.a.b.d	ENSGT00940000161037	ENSGT00940000155168.a.a.a	ENSGT00940000160242.a.a	ENSGT00940000154337.a.a.c	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a.a.a ##22	ENSGT00940000155660.b.e	ENSGT00980000198854.b	ENSGT00530000063609.b.w.b ##26	ENSGT00940000161847.b.b.a	ENSGT00940000153385.b.a.b.fd.b.c	ENSGT00940000159023.w	ENSGT00980000198621	ENSGT00940000166527.d	ENSGT00940000166061.b	ENSGT00940000155321.d.a.o.a	ENSGT00940000154655.a.i.a.a	ENSGT00730000111042.`b.a	ENSGT00940000155549.a.b.c	ENSGT00390000018094.l.a	ENSGT00920000149145.m.a
Common carp reference	MODERN SPECIES	47	ENSCCRG00000077991	ENSCCRG00000078267	iglon5 (ENSCCRG00000058158)	ENSCCRG00000067412	ENSCCRG00000047505	etfb (ENSCCRG00000054593)	ENSCCRG00000054151	lim2.5 (ENSCCRG00000030486)	ENSCCRG00000072242	ENSCCRG00000045886	nr1d2a (ENSCCRG00000022043)	ube2e2 (ENSCCRG00000055274)	ENSCCRG00000058788	ENSCCRG00000027259	si:dkey-82o10.4 (ENSCCRG00000058795) #17	ENSCCRG00000082732 ##22	ENSCCRG00000073115	ENSCCRG00000075766	ENSCCRG00000063851 ##26	ENSCCRG00000030251	brd2b (ENSCCRG00000061806)	ENSCCRG00000049924	ENSCCRG00000079153	pbx2 (ENSCCRG00000020815)	ext1a (ENSCCRG00000069191)	rad21a (ENSCCRG00000046891)	eif3ha (ENSCCRG00000029880)	ENSCCRG00000063405	ENSCCRG00000060477	ENSCCRG00000045364	slc25a32b (ENSCCRG00000061846)
Golden-line barbel	MODERN SPECIES	149								ENSSGRG00000052761	nr1d2a (ENSSGRG00000052762)	ube2e2 (ENSSGRG00000052769)	ZNF385D (ENSSGRG00000052781)	rab5ab (ENSSGRG00000052799)	efhb (ENSSGRG00000052810)	ENSSGRG00000052811	ENSSGRG00000052812	ENSSGRG00000052813 ##22	PLCL2 (ENSSGRG00000052814)	ENSSGRG00000052815	ENSSGRG00000052816	ENSSGRG00000052817 ##26	BRD2 (ENSSGRG00000052820)	brd2b (ENSSGRG00000052821)	ENSSGRG00000052823	pbx2 (ENSSGRG00000052830)	ENSSGRG00000052832	EXT1 (ENSSGRG00000052834)	rad21a (ENSSGRG00000052859)	eif3ha (ENSSGRG00000052895)	ENSSGRG00000052930	CTHRC1 (ENSSGRG00000052943)	septin7b (ENSSGRG00000052958)
Cyprininae	ANCESTRAL SPECIES	691												ENSGT01070000256195	ENSGT00940000160242.a.b	ENSGT00940000154337.a.a.d	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a.a.b ##22	ENSGT00940000155660.b.f	ENSGT00980000198854.a	ENSGT00530000063609.b.w.a ##26	ENSGT00940000161847.b.b.b	ENSGT00940000153385.b.a.b.fd.b.d	ENSGT00940000159023.x	ENSGT00940000166527.c	ENSGT00940000166061.b
Cyprininae_a	ANCESTRAL SPECIES	254	ENSGT01100000263551.b.b.a.h	ENSGT00990000203527.a.a.a.e.a.h.b	ENSGT00990000203527.a.a.a.e.a.g.b	ENSGT00990000203527.a.a.a.f.m	ENSGT00940000160467.f.b	ENSGT00390000013999.e	ENSGT00940000160704.a.a.c.a.a	ENSGT00390000009936.n	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.a	ENSGT00990000203527.a.a.b.c.a.b	ENSGT00940000155168.a.a.b	ENSGT00940000165358	ENSGT00940000160242.a.b	ENSGT00940000154337.a.a.d	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a.a.b ##22	ENSGT00940000155660.b.f	ENSGT00980000198854.a	ENSGT00530000063609.b.w.a ##26	ENSGT00940000161847.b.b.b	ENSGT00940000153385.b.a.b.fd.b.d	ENSGT00940000159023.x	ENSGT00940000166527.c	ENSGT00940000155321.d.a.p	ENSGT00940000154655.a.i.a.b	ENSGT00730000111042.`b.b	ENSGT00940000155549.a.b.d	ENSGT00390000018094.l.b.b	ENSGT00920000149145.m.b	ENSGT00940000154222.d.a.l	ENSGT00940000178392
Common carp reference	MODERN SPECIES	2	ENSCCRG00000027825	ENSCCRG00000082464	ENSCCRG00000065818	iglon5 (ENSCCRG00000027800)	ENSCCRG00000066960	ENSCCRG00000007377	ENSCCRG00000060590	etfb (ENSCCRG00000076871)	lim2.5 (ENSCCRG00000020849)	ENSCCRG00000055231	nr1d2a (ENSCCRG00000072521)	ube2e2 (ENSCCRG00000034670)	ENSCCRG00000027215	efhb (ENSCCRG00000027291)	rab5ab (ENSCCRG00000021082)	ENSCCRG00000070874 ##22	PLCL2 (ENSCCRG00000005178)	ENSCCRG00000030546	ENSCCRG00000005149 ##26	ENSCCRG00000020809	brd2b (ENSCCRG00000074838)	ENSCCRG00000081524	pbx2 (ENSCCRG00000010435)	ENSCCRG00000010430	ext1a (ENSCCRG00000019432)	rad21a (ENSCCRG00000024578)	eif3ha (ENSCCRG00000023810)	ENSCCRG00000064038	ENSCCRG00000078770	slc25a32b (ENSCCRG00000075919)	ENSCCRG00000081747
Goldfish	MODERN SPECIES	35	ENSCARG00000054580	ifnlr1 (ENSCARG00000054596)	ENSCARG00000054657	ENSCARG00000055085	azin1a (ENSCARG00000055095)	atp6v1c1a (ENSCARG00000055128)	baalca (ENSCARG00000055426)	ENSCARG00000055445	TPPP (ENSCARG00000055551)	ENSCARG00000055569	ENSCARG00000055596	ENSCARG00000055624	ZNF385D (ENSCARG00000055641)	ENSCARG00000055672	efhb (ENSCARG00000055707)	ENSCARG00000055745 ##22	PLCL2 (ENSCARG00000055805)	ENSCARG00000055824	ENSCARG00000055841 ##26	ENSCARG00000055850	brd2b (ENSCARG00000055873)	ENSCARG00000055952	ENSCARG00000056078	pbx2 (ENSCARG00000056094)	ENSCARG00000056127	nr1d2a (ENSCARG00000056152)	ENSCARG00000056210	ENSCARG00000056223	lim2.5 (ENSCARG00000056243)	etfb (ENSCARG00000056281)	USF2 (ENSCARG00000056331)
Zebrafish	MODERN SPECIES	7	ENSDARG00000079661	ENSDARG00000097901	iglon5 (ENSDARG00000022176)	hamp (ENSDARG00000102175)	etfb (ENSDARG00000009250)	ENSDARG00000089237	lim2.5 (ENSDARG00000041295)	ENSDARG00000041292	NEK10 (ENSDARG00000025335)	nr1d2a (ENSDARG00000003820)	ube2e2 (ENSDARG00000034670)	ZNF385D (ENSDARG00000086162)	rab5ab (ENSDARG00000007257)	efhb (ENSDARG00000069703)	si:dkey-82o10.4 (ENSDARG00000101526) #17	ENSDARG00000062621 ##22	ENSDARG00000111040	PLCL2 (ENSDARG00000098826)	ENSDARG00000103034	ENSDARG00000098654 ##26	ENSDARG00000097239	brd2b (ENSDARG00000046087)	TAP1 (ENSDARG00000079766)	ENSDARG00000088308	pbx2 (ENSDARG00000019717)	ext1a (ENSDARG00000103155)	rad21a (ENSDARG00000006092)	eif3ha (ENSDARG00000102452)	CSMD3 (ENSDARG00000077905)	CTHRC1 (ENSDARG00000001971)	slc25a32b (ENSDARG00000026835)
Cyprinoidei	ANCESTRAL SPECIES	487															ENSGT00940000168259	ENSGT00390000008096.C.a.b ##22
Cyprininae	ANCESTRAL SPECIES	115	ENSGT00940000157616.j.a.b	ENSGT00940000157071.s	ENSGT00940000159356.a.b.b.b	ENSGT01050000244841.A.b.a.b.a.a.i.a	ENSGT00390000014772.k.e	ENSGT00940000161408.a	ENSGT00950000183051.a.a.a.a	ENSGT00940000156500.e	ENSGT00390000010779.a.b.a.f	ENSGT00530000063631.a.k.b	ENSGT00510000047030.d.q.b	ENSGT00390000006540.f	ENSGT00940000154995.fb	ENSGT00940000154337.b.f	ENSGT00940000168259	ENSGT00390000008096.C.a.b ##22	ENSGT00940000156869.i	ENSGT00390000008096.C.b.a ##22	ENSGT00940000157121.g	ENSGT00530000063480.b.p ##24	ENSGT00530000063609.b.x.q.a ##26	ENSGT00390000004280.a	ENSGT00950000183188.B.j	ENSGT00940000154957.B.a	ENSGT00940000157167.`b
Cyprininae_a	ANCESTRAL SPECIES	52	ENSGT00940000157616.j.a.b	ENSGT00940000157071.s	ENSGT00940000159356.a.b.b.b	ENSGT01050000244841.A.b.a.b.a.a.i.a	ENSGT00390000014772.k.e	ENSGT00940000161408.a	ENSGT00950000183051.a.a.a.a	ENSGT00940000156500.e	ENSGT00390000010779.a.b.a.f	ENSGT00530000063631.a.k.b	ENSGT00510000047030.d.q.b	ENSGT00390000006540.f	ENSGT00940000154995.fb	ENSGT00940000154337.b.f	ENSGT00940000168259	ENSGT00390000008096.C.a.b ##22	ENSGT00940000156869.i	ENSGT00390000008096.C.b.a ##22	ENSGT00940000157121.g	ENSGT00530000063480.b.p ##24	ENSGT00530000063609.b.x.q.a ##26	ENSGT00390000004280.a	ENSGT00950000183188.B.j	ENSGT00940000154957.B.a	ENSGT00940000157167.`b
Golden-line barbel	MODERN SPECIES	1377		ENSSGRG00000023767	ENSSGRG00000023765	SLC2A1 (ENSSGRG00000022127)	phc2b (ENSSGRG00000022098)	CTTNBP2NL (ENSSGRG00000022097)	wnt2ba (ENSSGRG00000022096)	st7l (ENSSGRG00000022040)	capza1a (ENSSGRG00000021990)	MOV10 (ENSSGRG00000021987)	rhoca (ENSSGRG00000021903)	ENSSGRG00000021899	ENSSGRG00000021897	ENSSGRG00000021894	ENSSGRG00000021892	ENSSGRG00000021890 ##22
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00390000017863	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000160835	ENSGT00940000165119	ENSGT00940000158360	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Northern pike	MODERN SPECIES	19	ENSELUG00000030453	ICA1 (ENSELUG00000014422)	ENSELUG00000014355	mios (ENSELUG00000014330)	col28a1b (ENSELUG00000014187)	ENSELUG00000013795	ENSELUG00000013823	septin7b (ENSELUG00000013781)	NEK10 (ENSELUG00000013730)	ENSELUG00000013678	nr1d2a (ENSELUG00000013653)	ube2e2 (ENSELUG00000013551)	ZNF385D (ENSELUG00000013443)	rab5ab (ENSELUG00000027339)	efhb (ENSELUG00000013423)	ENSELUG00000013387 ##22	PLCL2 (ENSELUG00000013315)	ENSELUG00000013267	ENSELUG00000013226 ##26	ENSELUG00000013187	BRD2 (ENSELUG00000013167)	ENSELUG00000013120	ENSELUG00000013110	pbx2 (ENSELUG00000013086)	ENSELUG00000013047	dnase2 (ENSELUG00000013030)	rgl2 (ENSELUG00000000473)	PHF1 (ENSELUG00000012939)	SYNGAP1 (ENSELUG00000012732)	smg5 (ENSELUG00000012585)	PAQR6 (ENSELUG00000012518)
Salmoninae	ANCESTRAL SPECIES	27	ENSGT00940000158360.j.b	ENSGT00940000155427.a.d	ENSGT00950000182883.a.b.b.c	ENSGT00390000005530.a.b.`b	ENSGT00950000183046.b.a.d.b	ENSGT00390000015038.i	ENSGT00940000163195.A.c.b	ENSGT00940000154222.d.a.i	ENSGT00940000161037	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000160242.a.d	ENSGT00390000017863	ENSGT00940000154337.a.a.a.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b.g	ENSGT00940000156439.d.d	ENSGT00530000063609.b.w.i ##26	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f	ENSGT00940000159023	ENSGT00980000198621.a	ENSGT00940000166527.f	ENSGT00940000175842	ENSGT00940000166061.b.a	ENSGT00390000002634.a.e.e	ENSGT00940000167370.e	ENSGT00950000183180.a.b.j.b	ENSGT00940000154566.f	ENSGT00940000160567.t
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000155427.a.d	ENSGT00950000182883.a.b.b.c	ENSGT00390000005530.a.b.`b	ENSGT00950000183046.b.a.d.b	ENSGT00390000015038.i	ENSGT00940000163195.A.c.a.b.a.b	ENSGT00390000001883.f	ENSGT00940000154222.d.a.i	ENSGT00940000161037	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b	ENSGT00940000168259	ENSGT00390000008096.C.a.c ##22	ENSGT00940000155660.b.g	ENSGT00940000156439.d.d	ENSGT00530000063609.b.w.i ##26	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f	ENSGT00940000159023.z.a.a	ENSGT00980000198621.a	ENSGT00940000166527.f	ENSGT00940000166061.b.a	ENSGT00390000002634.a.e.e	ENSGT00940000167370.e	ENSGT00950000183180.a.b.i.b.a	ENSGT00940000158438.n.f	ENSGT00940000154566.f	ENSGT00940000160567.t
Salmo	ANCESTRAL SPECIES	1	ENSGT00950000182883.a.b.b.c	ENSGT00390000005530.a.b.`b	ENSGT00950000183046.b.a.d.b	ENSGT00390000015038.i	ENSGT00940000163195.A.c.a.b.a.b	ENSGT00390000001883.f	ENSGT00940000154222.d.a.i	ENSGT00940000161037	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000165550.a.b.a.b.e	ENSGT00940000165358	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b	ENSGT00390000008096.C.a.c ##22	ENSGT00940000155660.b.g	ENSGT00940000156439.d.d	ENSGT00530000063609.b.w.i ##26	ENSGT01060000253451	ENSGT00940000153385.b.a.b.fd.b.f	ENSGT00940000159023.z.a.a	ENSGT00940000166527.f	ENSGT00940000166061.b.a	ENSGT00390000002634.a.e.e	ENSGT00940000167370.e	ENSGT00950000183180.a.b.i.b.a	ENSGT00940000158438.n.f	ENSGT00940000154566.f	ENSGT00940000160567.t	ENSGT00940000159412.d
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000086659	ENSSSAG00000089732	ENSSSAG00000043115	mios (ENSSSAG00000003778)	col28a1b (ENSSSAG00000042892)	ENSSSAG00000003811	septin7b (ENSSSAG00000003872)	ENSSSAG00000004894	ENSSSAG00000004993	nr1d2a (ENSSSAG00000005012)	ENSSSAG00000005025	ube2e2 (ENSSSAG00000110907)	ZNF385D (ENSSSAG00000120560)	ENSSSAG00000005083	rab5a (ENSSSAG00000005090)	ENSSSAG00000005140 ##22	ENSSSAG00000005169	ENSSSAG00000093757	ENSSSAG00000109004 ##26	ENSSSAG00000103460	ENSSSAG00000005215	ENSSSAG00000097841	tap1 (ENSSSAG00000005352)	ENSSSAG00000005840	pbx2 (ENSSSAG00000073977)	ENSSSAG00000119738	dnase2 (ENSSSAG00000073967)	rgl2 (ENSSSAG00000005857)	ENSSSAG00000005949	ENSSSAG00000006576	smg5 (ENSSSAG00000006730)
River trout	MODERN SPECIES	22	ENSSTUG00000030665	THSD7A (ENSSTUG00000030695)	ENSSTUG00000031553	ICA1 (ENSSTUG00000031558)	ENSSTUG00000031572	mios (ENSSTUG00000031582)	ENSSTUG00000031716	septin7b (ENSSTUG00000031833)	NEK10 (ENSSTUG00000035244)	ENSSTUG00000035391	nr1d2a (ENSSTUG00000035430)	ZNF385D (ENSSTUG00000035505)	ENSSTUG00000035511	rab5ab (ENSSTUG00000035514)	ENSSTUG00000035530	ENSSTUG00000035539 ##22	PLCL2 (ENSSTUG00000035580)	ENSSTUG00000035590	ENSSTUG00000035603 ##26	ENSSTUG00000035613	ENSSTUG00000035621	ENSSTUG00000035626	TAP1 (ENSSTUG00000035704)	pbx2 (ENSSTUG00000036084)	ENSSTUG00000036100	dnase2 (ENSSTUG00000036111)	rgl2 (ENSSTUG00000036123)	PHF1 (ENSSTUG00000036207)	SYNGAP1 (ENSSTUG00000036422)	smg5 (ENSSTUG00000036549)	PAQR6 (ENSSTUG00000037418)
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00390000005530.a.b.`b	ENSGT00950000183046.b.a.d.b	ENSGT00390000015038.i	ENSGT00940000163195.A.c.b	ENSGT00940000163195.A.c.a.b.a.b	ENSGT00390000001883.f	ENSGT00940000154222.d.a.i	ENSGT00940000161037	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000165358.j	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b	ENSGT00940000168259	ENSGT00390000008096.C.a.c ##22	ENSGT00940000155660.b.g	ENSGT00940000156439.d.d	ENSGT00530000063609.b.w.i ##26	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f	ENSGT00940000159023.z.a.a	ENSGT00980000198621.a	ENSGT00940000166527.f	ENSGT00940000166061.b.a	ENSGT00940000175842	ENSGT00390000002634.a.e.e	ENSGT00940000167370.e	ENSGT00950000183180.a.b.i.b.a	ENSGT00940000158438.n.f	ENSGT00940000154566.f
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00940000158360.j.b	ENSGT00940000155427.a.d	ENSGT00950000182883.a.b.b.c	ENSGT00390000005530.a.b.`b	ENSGT00950000183046.b.a.d.b	ENSGT00390000015038.i	ENSGT00940000163195.A.c.b	ENSGT00390000001883.f	ENSGT00940000154222.d.a.i	ENSGT00940000161037	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b	ENSGT00390000008096.C.a.c ##22	ENSGT00940000155660.b.g	ENSGT00940000156439.d.d	ENSGT00530000063609.b.w.i ##26	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f	ENSGT00940000159023.z.a.a	ENSGT00980000198621.a	ENSGT00940000166527.f.a	ENSGT00940000166061.b.a	ENSGT00940000166527.f.b	ENSGT00390000002634.a.e.e	ENSGT00940000167370.e	ENSGT00950000183180.a.b.i.b.a	ENSGT00940000158438.n.f	ENSGT00940000154566.f
Coho salmon	MODERN SPECIES	4	tmem106ba (ENSOKIG00005024332)	THSD7A (ENSOKIG00005024400)	ENSOKIG00005025028	ICA1 (ENSOKIG00005025044)	ENSOKIG00005025063	mios (ENSOKIG00005025075)	col28a1b (ENSOKIG00005025094)	septin7b (ENSOKIG00005025435)	NEK10 (ENSOKIG00005026735)	ENSOKIG00005026775	nr1d2a (ENSOKIG00005026836)	ENSOKIG00005026853	ZNF385D (ENSOKIG00005026878)	ENSOKIG00005026888	rab5ab (ENSOKIG00005026922)	ENSOKIG00005027009 ##22	ENSOKIG00005027076	PLCL2 (ENSOKIG00005027082)	ENSOKIG00005027095	ENSOKIG00005027109 ##26	ENSOKIG00005027128	ENSOKIG00005027136	BRD2 (ENSOKIG00005027190)	TAP1 (ENSOKIG00005027569)	pbx2 (ENSOKIG00005028150)	dnase2 (ENSOKIG00005028160)	ENSOKIG00005028167	rgl2 (ENSOKIG00005028179)	PHF1 (ENSOKIG00005028305)	SYNGAP1 (ENSOKIG00005028484)	smg5 (ENSOKIG00005028698)
Chinook salmon	MODERN SPECIES	15	seraf (ENSOTSG00005021348)	tmem106ba (ENSOTSG00005021345)	THSD7A (ENSOTSG00005021338)	ENSOTSG00005021333	ICA1 (ENSOTSG00005021331)	mios (ENSOTSG00005021329)	ENSOTSG00005021257	ENSOTSG00005021181	septin7b (ENSOTSG00005016792)	NEK10 (ENSOTSG00005016788)	ENSOTSG00005016781	nr1d2a (ENSOTSG00005016764)	ZNF385D (ENSOTSG00005016761)	ENSOTSG00005016760	rab5ab (ENSOTSG00005016759)	ENSOTSG00005016757 ##22	PLCL2 (ENSOTSG00005016753)	ENSOTSG00005016752	ENSOTSG00005016751 ##26	ENSOTSG00005016746	ENSOTSG00005016740	TAP1 (ENSOTSG00005016202)	ENSOTSG00005016201	pbx2 (ENSOTSG00005016195)	ENSOTSG00005016193	ENSOTSG00005016191	dnase2 (ENSOTSG00005016188)	rgl2 (ENSOTSG00005016183)	ENSOTSG00005016164	SYNGAP1 (ENSOTSG00005016140)	smg5 (ENSOTSG00005016088)
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000051518	mios (ENSOMYG00000005543)	col28a1b (ENSOMYG00000005500)	ENSOMYG00000005444	septin7b (ENSOMYG00000004351)	ENSOMYG00000003070	ENSOMYG00000057705	ENSOMYG00000065644	nr1d2a (ENSOMYG00000002986)	ube2e2 (ENSOMYG00000002946)	ZNF385D (ENSOMYG00000002878)	ENSOMYG00000002864	rab5ab (ENSOMYG00000002847)	ENSOMYG00000002829	ENSOMYG00000056184	ENSOMYG00000002798 ##22	ENSOMYG00000002719	ENSOMYG00000002704	ENSOMYG00000002677 ##26	ENSOMYG00000002664	ENSOMYG00000002612	ENSOMYG00000002497	pbx2 (ENSOMYG00000002362)	ENSOMYG00000069826	dnase2 (ENSOMYG00000002329)	rgl2 (ENSOMYG00000002302)	ENSOMYG00000002193	ENSOMYG00000058879	ENSOMYG00000002081	ENSOMYG00000062449	ENSOMYG00000048746
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00390000015038.j	ENSGT00940000163195.A.c.a.b.a.a	ENSGT00390000001883.e	ENSGT00940000178392	ENSGT00940000154222.d.a.j	ENSGT00940000156196.a.a	ENSGT00940000155168.a.a.f	ENSGT00940000165550.a.b.a.b.e	ENSGT00940000165358	ENSGT00940000160242.a.c	ENSGT00390000017863.d	ENSGT00940000154337.a.a.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00390000008096.C.a.d ##22	ENSGT00940000155660.b.h	ENSGT00940000156439.d.c	ENSGT00530000063609.b.w.j ##26	ENSGT00390000009313.p.a	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b.e	ENSGT00940000159023.z.a.b	ENSGT00940000159023.z.b	ENSGT00980000198621.b	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f	ENSGT00940000167370.f	ENSGT00950000183180.a.b.i.a
Salmo	ANCESTRAL SPECIES	32	ENSGT00390000005530.a.b.z	ENSGT00950000183046.b.a.d.a	ENSGT00390000015038.j	ENSGT00940000163195.A.c.a.b.a.a	ENSGT00390000001883.e	ENSGT00940000178392	ENSGT00940000154222.d.a.j	ENSGT00940000156196.a.a	ENSGT00940000155168.a.a.f	ENSGT00940000165550.a.a.b	ENSGT00940000160242.a.c	ENSGT00390000017863.d	ENSGT00940000154337.a.a.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a.d ##22	ENSGT00940000155660.b.h	ENSGT00940000156439.d.c	ENSGT00530000063609.b.w.j.b ##26	ENSGT00530000063609.b.w.j.a ##26	ENSGT00390000009313.o	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b.e	ENSGT00980000198621.b	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f	ENSGT00940000167370.f	ENSGT00950000183180.a.b.j.a	ENSGT00940000158438.n.e
Atlantic salmon	MODERN SPECIES	11	col28a1b (ENSSSAG00000102597)	ENSSSAG00000042841	ENSSSAG00000084091	septin7b (ENSSSAG00000039420)	ENSSSAG00000119862	ENSSSAG00000037692	nr1d2a (ENSSSAG00000037545)	ENSSSAG00000036681	ube2e2 (ENSSSAG00000104908)	ENSSSAG00000095170	ENSSSAG00000005076	ENSSSAG00000074544	ENSSSAG00000110150	efhb (ENSSSAG00000074537)	si:dkey-82o10.4 (ENSSSAG00000074533) #17	ENSSSAG00000074524 ##22	ENSSSAG00000074521	ENSSSAG00000110570	ENSSSAG00000074516 ##26	ENSSSAG00000005193 ##26	ENSSSAG00000074512	ENSSSAG00000074036	ENSSSAG00000074015	ENSSSAG00000073985	ENSSSAG00000113663	pbx2 (ENSSSAG00000005841)	dnase2 (ENSSSAG00000096026)	rgl2 (ENSSSAG00000073947)	ENSSSAG00000073965	ENSSSAG00000073247	smg5 (ENSSSAG00000072976)
River trout	MODERN SPECIES	30	ENSSTUG00000044263	ENSSTUG00000044257	mios (ENSSTUG00000044244)	col28a1b (ENSSTUG00000044222)	ENSSTUG00000044186	ENSSTUG00000044173	septin7b (ENSSTUG00000043374)	ENSSTUG00000043224	nr1d2a (ENSSTUG00000043201)	ENSSTUG00000043125	ZNF385D (ENSSTUG00000043093)	ENSSTUG00000043045	rab5ab (ENSSTUG00000042995)	efhb (ENSSTUG00000042934)	si:dkey-82o10.4 (ENSSTUG00000042900) #17	ENSSTUG00000042827 ##22	ENSSTUG00000042800	ENSSTUG00000042765	ENSSTUG00000042745 ##26	ENSSTUG00000042724 ##26	ENSSTUG00000042709	ENSSTUG00000042635	ENSSTUG00000042604	BRD2 (ENSSTUG00000042401)	pbx2 (ENSSTUG00000042384)	ENSSTUG00000042362	dnase2 (ENSSTUG00000042334)	rgl2 (ENSSTUG00000042149)	ENSSTUG00000041867	SYNGAP1 (ENSSTUG00000039408)	smg5 (ENSSTUG00000039078)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00390000015038.j	ENSGT00940000163195.A.c.a.b.a.a	ENSGT00390000001883.e	ENSGT00940000178392	ENSGT00940000154222.d.a.j	ENSGT00940000156196.a.a	ENSGT00940000155168.a.a.f	ENSGT00940000165550.a.b.a.b.e	ENSGT00940000165358.i	ENSGT00940000160242.a.c	ENSGT00390000017863.d	ENSGT00940000154337.a.a.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00390000008096.C.a.d ##22	ENSGT00940000155660.b.h	ENSGT00940000156439.d.c	ENSGT00530000063609.b.w.j ##26	ENSGT00390000009313.p.a	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b.e	ENSGT00940000159023.z.a.b	ENSGT00940000159023.z.b	ENSGT00980000198621.b	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f	ENSGT00940000167370.f	ENSGT00950000183180.a.b.i.a
Rainbow trout	MODERN SPECIES	21	mios (ENSOMYG00000067752)	ENSOMYG00000074439	ENSOMYG00000010947	ENSOMYG00000010802	ENSOMYG00000010792	septin7b (ENSOMYG00000008544)	ENSOMYG00000075187	ENSOMYG00000052779	nr1d2a (ENSOMYG00000007343)	ENSOMYG00000049425	ube2e2 (ENSOMYG00000007159)	ENSOMYG00000007065	rab5ab (ENSOMYG00000007020)	ENSOMYG00000006804	si:dkey-82o10.4 (ENSOMYG00000006969) #17	ENSOMYG00000006928 ##22	ENSOMYG00000006632	ENSOMYG00000006586	ENSOMYG00000006578 ##26	ENSOMYG00000006489	ENSOMYG00000050780	ENSOMYG00000006362	ENSOMYG00000006200	ENSOMYG00000006114	pbx2 (ENSOMYG00000006078)	ENSOMYG00000006056	dnase2 (ENSOMYG00000006034)	ENSOMYG00000052233	rgl2 (ENSOMYG00000005901)	ENSOMYG00000005982	ENSOMYG00000005694
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00390000015038.j	ENSGT00940000163195.A.c.a.b.a.a	ENSGT00390000001883.e	ENSGT00940000178392	ENSGT00940000154222.d.a.j	ENSGT00940000156196.a.a	ENSGT00940000155168.a.a.f	ENSGT00940000165550.a.b.a.b.e	ENSGT00940000165358.i	ENSGT00940000160242.a.c	ENSGT00390000017863.d	ENSGT00940000154337.a.a.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00390000008096.C.a.d ##22	ENSGT00940000155660.b.h	ENSGT00940000156439.d.c	ENSGT00530000063609.b.w.j ##26	ENSGT00390000009313.p.a	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b.e	ENSGT00940000159023.z.a.b	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f	ENSGT00940000167370.f	ENSGT00950000183180.a.b.i.a	ENSGT00940000158438.n.e	ENSGT00940000154566.e
Coho salmon	MODERN SPECIES	11	ENSOKIG00005031540	ENSOKIG00005031511	GLCCI1 (ENSOKIG00005031503)	mios (ENSOKIG00005031479)	col28a1b (ENSOKIG00005031459)	ENSOKIG00005031356	ENSOKIG00005031340	septin7b (ENSOKIG00005028076)	ENSOKIG00005027858	nr1d2a (ENSOKIG00005027773)	ube2e2 (ENSOKIG00005027719)	ENSOKIG00005027701	rab5ab (ENSOKIG00005027641)	efhb (ENSOKIG00005027615)	si:dkey-82o10.4 (ENSOKIG00005027596) #17	ENSOKIG00005027557 ##22	PLCL2 (ENSOKIG00005027545)	ENSOKIG00005027528	ENSOKIG00005027517 ##26	VMO1 (ENSOKIG00005027501)	ENSOKIG00005027464	ENSOKIG00005027444	BRD2 (ENSOKIG00005027339)	TAP1 (ENSOKIG00005027237)	pbx2 (ENSOKIG00005027218)	dnase2 (ENSOKIG00005027197)	rgl2 (ENSOKIG00005027119)	PHF1 (ENSOKIG00005026963)	SYNGAP1 (ENSOKIG00005024218)	smg5 (ENSOKIG00005024109)	PAQR6 (ENSOKIG00005024083)
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005015396	ENSOTSG00005015392	septin7b (ENSOTSG00005011100)	ENSOTSG00005011073	nr1d2a (ENSOTSG00005011068)	ube2e1 (ENSOTSG00005011066)	ube2e2 (ENSOTSG00005011062)	ENSOTSG00005011059	ZNF385D (ENSOTSG00005011047)	ENSOTSG00005011045	rab5ab (ENSOTSG00005011027)	efhb (ENSOTSG00005008535)	ENSOTSG00005008532	si:dkey-82o10.4 (ENSOTSG00005008528) #17	ENSOTSG00005008524	ENSOTSG00005008515 ##22	ENSOTSG00005008513	ENSOTSG00005008512	ENSOTSG00005008511 ##26	ENSOTSG00005007783	VMO1 (ENSOTSG00005007762)	ENSOTSG00005007760	ENSOTSG00005007759	pbx2 (ENSOTSG00005007758)	ENSOTSG00005007748	dnase2 (ENSOTSG00005007746)	rgl2 (ENSOTSG00005007742)	PHF1 (ENSOTSG00005007739)	SYNGAP1 (ENSOTSG00005007737)	smg5 (ENSOTSG00005007486)	PAQR6 (ENSOTSG00005007482)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	369	ENSHHUG00000028111	ENSHHUG00000028131	ENSHHUG00000028136	ENSHHUG00000028138	septin7b (ENSHHUG00000028154)	ENSHHUG00000030153	NEK10 (ENSHHUG00000030189)	ENSHHUG00000030228	nr1d2a (ENSHHUG00000030483)	ube2e2 (ENSHHUG00000030485)	ENSHHUG00000030604	ZNF385D (ENSHHUG00000030606)	ENSHHUG00000030610	RAB5A (ENSHHUG00000030616)	ENSHHUG00000030651	ENSHHUG00000030668 ##22	ENSHHUG00000030685	ENSHHUG00000030707
Huchen	MODERN SPECIES	586	col28a1b (ENSHHUG00000028429)	ENSHHUG00000028412	septin7b (ENSHHUG00000026924)	ENSHHUG00000026903	ENSHHUG00000026901	ENSHHUG00000026897	ENSHHUG00000026723	nr1d2a (ENSHHUG00000026713)	ENSHHUG00000026603	ENSHHUG00000026588	rab5ab (ENSHHUG00000026537)	efhb (ENSHHUG00000026520)	si:dkey-82o10.4 (ENSHHUG00000026512) #17	ENSHHUG00000026510	ENSHHUG00000026509 #22	ENSHHUG00000026506 ##22
Acanthomorphata	ANCESTRAL SPECIES	34	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Cod	MODERN SPECIES	2	ENSGMOG00000026840	ENSGMOG00000019171	ENSGMOG00000029942	ENSGMOG00000034144	ENSGMOG00000037087	ENSGMOG00000032761	ENSGMOG00000003465	ENSGMOG00000003450	ENSGMOG00000025578	ENSGMOG00000003473	ENSGMOG00000036598	ENSGMOG00000006299	rab5ab (ENSGMOG00000007127)	ENSGMOG00000007130	si:dkey-82o10.4 (ENSGMOG00000007169) #17	ENSGMOG00000026649 ##22	ENSGMOG00000007186	ENSGMOG00000007190	ENSGMOG00000037236 ##26	ENSGMOG00000026058	ENSGMOG00000007204	ENSGMOG00000007212	ENSGMOG00000024630	ENSGMOG00000032996	ENSGMOG00000007235	pbx2 (ENSGMOG00000007244)	dnase2 (ENSGMOG00000031075)	rgl2 (ENSGMOG00000007259)	ENSGMOG00000007276	ENSGMOG00000007288	smg5 (ENSGMOG00000007310)
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Pinecone sodierfish	MODERN SPECIES	7	septin7b (ENSMMDG00005001662)	ENSMMDG00005001439	ENSMMDG00005001305	ENSMMDG00005001291	ENSMMDG00005001288	ENSMMDG00005001274	ENSMMDG00005001261	nr1d2a (ENSMMDG00005001253)	ube2e2 (ENSMMDG00005001232)	ENSMMDG00005005371	ZNF385D (ENSMMDG00005005347)	ENSMMDG00005005335	ENSMMDG00005005310	efhb (ENSMMDG00005005303)	si:dkey-82o10.4 (ENSMMDG00005005298) #17	ENSMMDG00005005294 ##22	PLCL2 (ENSMMDG00005005290)	ENSMMDG00005003507	ENSMMDG00005003479 ##26	ENSMMDG00005003475	ENSMMDG00005003470	ENSMMDG00005003466	ENSMMDG00005003451	VMO1 (ENSMMDG00005003449)	ENSMMDG00005003447	ENSMMDG00005003376	her7 (ENSMMDG00005003368)	ENSMMDG00005003366	ENSMMDG00005003364	pbx2 (ENSMMDG00005003360)	ENSMMDG00005003352
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b
Tiger tail seahorse	MODERN SPECIES	276	ENSHCOG00000006274	ICA1 (ENSHCOG00000006232)	GLCCI1 (ENSHCOG00000006179)	mios (ENSHCOG00000006161)	col28a1b (ENSHCOG00000006105)	ENSHCOG00000006014	septin7b (ENSHCOG00000006008)	NEK10 (ENSHCOG00000005982)	ENSHCOG00000005921	nr1d2a (ENSHCOG00000005885)	ube2e1 (ENSHCOG00000005880)	ube2e2 (ENSHCOG00000005857)	ENSHCOG00000005842	rab5ab (ENSHCOG00000005824)	ENSHCOG00000005811	ENSHCOG00000005780 ##22	PLCL2 (ENSHCOG00000005743)	ENSHCOG00000005725 ##26	tbx20 (ENSHCOG00000005709)	herpud2 (ENSHCOG00000005690)	ENSHCOG00000005687	dpy19l1l (ENSHCOG00000005678)	gbp (ENSHCOG00000005627)	ENSHCOG00000005610	ccne2 (ENSHCOG00000005511)	tp53inp1 (ENSHCOG00000005500)	nagpa (ENSHCOG00000005491)	NDUFAF6 (ENSHCOG00000000773)	ENSHCOG00000000176
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000178830	ENSGT00940000162790.a.v	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT01100000263625.A	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01030000235115	ENSGT01100000263625.B	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000011394	ENSMAMG00000025548	septin7b (ENSMAMG00000011379)	ENSMAMG00000011360	ENSMAMG00000011322	ENSMAMG00000027493	ENSMAMG00000011311	ENSMAMG00000011302	ENSMAMG00000027740	ENSMAMG00000011233	nr1d2a (ENSMAMG00000011205)	ube2e2 (ENSMAMG00000011190)	ENSMAMG00000011172	rab5ab (ENSMAMG00000011160)	ENSMAMG00000011147	ENSMAMG00000011041 ##22	ENSMAMG00000010974	ENSMAMG00000010962	ENSMAMG00000010947 ##26	ENSMAMG00000010935	ENSMAMG00000010912	ENSMAMG00000010898	ENSMAMG00000026570	ENSMAMG00000028340	pbx2 (ENSMAMG00000010824)	ENSMAMG00000010815	dnase2 (ENSMAMG00000010809)	rgl2 (ENSMAMG00000010763)	ENSMAMG00000010747	ENSMAMG00000010739	smg5 (ENSMAMG00000010683)
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263625.B	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000018218	ENSBSLG00000018199	ENSBSLG00000018173	ENSBSLG00000017885	ENSBSLG00000017867	ENSBSLG00000017854	ENSBSLG00000017841	ENSBSLG00000017696	ENSBSLG00000017676	ENSBSLG00000017661	nr1d2a (ENSBSLG00000017637)	UBE2E2 (ENSBSLG00000017484)	ENSBSLG00000017356	ENSBSLG00000017283	efhb (ENSBSLG00000017251)	ENSBSLG00000017220 ##22	PLCL2 (ENSBSLG00000017186)	ENSBSLG00000017164	ENSBSLG00000017112 ##26	ENSBSLG00000017090	BRD2 (ENSBSLG00000016725)	ENSBSLG00000015596	ENSBSLG00000015571	her7 (ENSBSLG00000015560)	pbx2 (ENSBSLG00000015536)	ENSBSLG00000015526	dnase2 (ENSBSLG00000015520)	rgl2 (ENSBSLG00000015431)	PHF1 (ENSBSLG00000015396)	SYNGAP1 (ENSBSLG00000015193)	smg5 (ENSBSLG00000014276)
Climbing perch	MODERN SPECIES	7	ENSATEG00000004437	ENSATEG00000004525	ENSATEG00000004499	ENSATEG00000004536	ENSATEG00000029443	ENSATEG00000025964	ENSATEG00000004582	ENSATEG00000025528	ENSATEG00000004660	nr1d2a (ENSATEG00000004676)	ENSATEG00000004685	ube2e2 (ENSATEG00000004735)	ZNF385D (ENSATEG00000004760)	rab5ab (ENSATEG00000004767)	efhb (ENSATEG00000004785)	ENSATEG00000004828 ##22	ENSATEG00000004933	ENSATEG00000004974	ENSATEG00000005007 ##26	ENSATEG00000005015	ENSATEG00000005034	ENSATEG00000005039	ENSATEG00000005138	ENSATEG00000005151	pbx2 (ENSATEG00000005174)	ENSATEG00000005209	dnase2 (ENSATEG00000005230)	rgl2 (ENSATEG00000005242)	ENSATEG00000005287	ENSATEG00000005290	smg5 (ENSATEG00000005348)
Carangaria	ANCESTRAL SPECIES	1	ENSGT01100000263625.B	ENSGT01030000235115	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00940000156196.a	ENSGT01100000263625.B	ENSGT00940000163911.a.a.b.a.b	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT01100000263473.a.b.g.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Seriola	ANCESTRAL SPECIES	58	ENSGT00940000163911.a.a.b.a.b.i.a	ENSGT00940000163911.a.a.b.a.a.a.a.b.g.b	ENSGT01100000263473.a.b.g.b	ENSGT01030000235115.d	ENSGT00940000163911.a.a.b.a.a.a.a.b.g.a	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26
Greater amberjack	MODERN SPECIES	186	ENSSDUG00000011685	ENSSDUG00000011670	ENSSDUG00000011660	ENSSDUG00000011652	ENSSDUG00000011640	ENSSDUG00000011633	ENSSDUG00000011628	nr1d2a (ENSSDUG00000011576)	ube2e1 (ENSSDUG00000011554)	ube2e2 (ENSSDUG00000011537)	ENSSDUG00000011523	ZNF385D (ENSSDUG00000011507)	rab5ab (ENSSDUG00000011497)	efhb (ENSSDUG00000011481)	si:dkey-82o10.4 (ENSSDUG00000011471) #17	ENSSDUG00000011443 ##22	PLCL2 (ENSSDUG00000011425)	ENSSDUG00000011417	ENSSDUG00000011393 ##26
Yellowtail amberjack	MODERN SPECIES	2576													rab5ab (ENSSLDG00000012000)	ENSSLDG00000012037	si:dkey-82o10.4 (ENSSLDG00000012079) #17	ENSSLDG00000012089 ##22	PLCL2 (ENSSLDG00000012128)	ENSSLDG00000012153	ENSSLDG00000012170 ##26
Barramundi perch	MODERN SPECIES	104											ENSLCAG00010000699	ENSLCAG00010000706	rab5ab (ENSLCAG00010000722)	efhb (ENSLCAG00010000738)	si:dkey-82o10.4 (ENSLCAG00010000743) #17	ENSLCAG00010000751 ##22	PLCL2 (ENSLCAG00010000764)	ENSLCAG00010000791	ENSLCAG00010000841 ##26	ENSLCAG00010000845	ENSLCAG00010000929	ENSLCAG00010001085	BRD2 (ENSLCAG00010001091)	ENSLCAG00010001097	ENSLCAG00010001101	ENSLCAG00010001107	ENSLCAG00010001113	pbx2 (ENSLCAG00010001121)	ENSLCAG00010001127	dnase2 (ENSLCAG00010001131)	rgl2 (ENSLCAG00010001143)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00390000015038	ENSGT00940000163195.A.c	ENSGT01090000260131	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Tongue sole	MODERN SPECIES	4	mios (ENSCSEG00000004036)	ENSCSEG00000004047	ENSCSEG00000004057	ENSCSEG00000004117	ENSCSEG00000004142	septin7b (ENSCSEG00000004191)	ENSCSEG00000004206	ENSCSEG00000004214	ENSCSEG00000004217	nr1d2a (ENSCSEG00000004221)	ube2e1 (ENSCSEG00000004227)	ube2e2 (ENSCSEG00000004236)	ENSCSEG00000004239	rab5ab (ENSCSEG00000004247)	ENSCSEG00000004254	ENSCSEG00000004271 ##22	PLCL2 (ENSCSEG00000004297)	ENSCSEG00000004300	ENSCSEG00000004304 ##26	ENSCSEG00000004309	gsdmeb (ENSCSEG00000004310)	pals2a (ENSCSEG00000004315)	malsu1 (ENSCSEG00000004324)	smpd5 (ENSCSEG00000004339)	grinab (ENSCSEG00000004351)	rbm24b (ENSCSEG00000004378)	KIF13A (ENSCSEG00000004383)	ENSCSEG00000004422	ptdss1a (ENSCSEG00000004423)	ENSCSEG00000004427	PLEKHG4B (ENSCSEG00000004437)
Turbot	MODERN SPECIES	7	ENSSMAG00000014885	mios (ENSSMAG00000014850)	ENSSMAG00000014779	ENSSMAG00000029867	ENSSMAG00000014674	septin7b (ENSSMAG00000014191)	ENSSMAG00000014146	ENSSMAG00000014046	ENSSMAG00000014030	nr1d2a (ENSSMAG00000014016)	ube2e2 (ENSSMAG00000013995)	ENSSMAG00000013846	ENSSMAG00000013833	ENSSMAG00000013816	si:dkey-82o10.4 (ENSSMAG00000013812) #17	ENSSMAG00000013769 ##22	ENSSMAG00000013746	ENSSMAG00000013730	ENSSMAG00000013717 ##26	ENSSMAG00000034565	ENSSMAG00000013677	ENSSMAG00000013629	ENSSMAG00000013604	ENSSMAG00000028548	ENSSMAG00000031338	ENSSMAG00000013387	pbx2 (ENSSMAG00000013369)	ENSSMAG00000013359	dnase2 (ENSSMAG00000013349)	rgl2 (ENSSMAG00000013255)	ENSSMAG00000013225
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e
Ballan wrasse	MODERN SPECIES	145					ENSLBEG00000003250	ENSLBEG00000003238	nr1d2a (ENSLBEG00000003211)	ube2e1 (ENSLBEG00000003170)	ube2e2 (ENSLBEG00000003135)	ENSLBEG00000003105	ENSLBEG00000003057	ZNF385D (ENSLBEG00000003004)	rab5ab (ENSLBEG00000002966)	ENSLBEG00000002920	si:dkey-82o10.4 (ENSLBEG00000002903) #17	ENSLBEG00000002834 ##22	PLCL2 (ENSLBEG00000002768)	ENSLBEG00000002742	ENSLBEG00000002716 ##26	VMO1 (ENSLBEG00000002696)	ENSLBEG00000002666	ENSLBEG00000002629	BRD2 (ENSLBEG00000002606)	ENSLBEG00000002583	ENSLBEG00000002531	ENSLBEG00000002514	ENSLBEG00000002506	pbx2 (ENSLBEG00000002473)	dnase2 (ENSLBEG00000002445)	rgl2 (ENSLBEG00000002404)	ENSLBEG00000002384
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Stickleback	MODERN SPECIES	19	ENSGACG00000012886	ENSGACG00000012887	ENSGACG00000012893	ENSGACG00000012905	mios (ENSGACG00000012908)	col28a1b (ENSGACG00000012913)	ENSGACG00000012932	septin7b (ENSGACG00000012939)	ENSGACG00000012955	nr1d2a (ENSGACG00000012958)	ube2e1 (ENSGACG00000012963)	ube2e2 (ENSGACG00000012968)	ENSGACG00000012978	ENSGACG00000012989	ENSGACG00000013008 #17	ENSGACG00000013013 ##22	ENSGACG00000013020	PLCL2 (ENSGACG00000013021)	ENSGACG00000013026	VMO1 (ENSGACG00000013032)	ENSGACG00000013037	ENSGACG00000013054	ENSGACG00000013070	ENSGACG00000013072	ENSGACG00000013074	pbx2 (ENSGACG00000013077)	ENSGACG00000013084	dnase2 (ENSGACG00000013086)	rgl2 (ENSGACG00000013112)	PHF1 (ENSGACG00000013128)	SYNGAP1 (ENSGACG00000013133)
Lumpfish	MODERN SPECIES	17	ZHX1 (ENSCLMG00005018793)	ATAD2 (ENSCLMG00005018794)	psma2a (ENSCLMG00005018920)	mrpl32 (ENSCLMG00005018922)	ENSCLMG00005018923	ccdc127a (ENSCLMG00005018925)	sdha (ENSCLMG00005018927)	ENSCLMG00005018956	ENSCLMG00005018958	ENSCLMG00005018960	nr1d2a (ENSCLMG00005018962)	ENSCLMG00005018963	ENSCLMG00005018967	rab5ab (ENSCLMG00005018968)	ENSCLMG00005018970	ENSCLMG00005018973 ##22	PLCL2 (ENSCLMG00005018976)	ENSCLMG00005019020	ENSCLMG00005019024 ##26	BRD2 (ENSCLMG00005019025)	ENSCLMG00005019032	ENSCLMG00005019042	ENSCLMG00005019043	pbx2 (ENSCLMG00005019044)	ENSCLMG00005019047	dnase2 (ENSCLMG00005019049)	rgl2 (ENSCLMG00005019051)	PHF1 (ENSCLMG00005019052)	SYNGAP1 (ENSCLMG00005019054)	smg5 (ENSCLMG00005019063)	ENSCLMG00005019073
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000015038	ENSGT00940000161647	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165358	ENSGT00940000158153.b	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00940000176137	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370
Pike perch	MODERN SPECIES	50	GLCCI1 (ENSSLUG00000008764)	mios (ENSSLUG00000008773)	ENSSLUG00000008787	ENSSLUG00000008798	ENSSLUG00000008800	septin7b (ENSSLUG00000008900)	NEK10 (ENSSLUG00000011164)	ENSSLUG00000011189	nr1d2a (ENSSLUG00000011202)	ube2e2 (ENSSLUG00000011214)	ZNF385D (ENSSLUG00000011226)	ENSSLUG00000011239	rab5ab (ENSSLUG00000011253)	efhb (ENSSLUG00000011257)	si:dkey-82o10.4 (ENSSLUG00000011267) #17	ENSSLUG00000011271 ##22	ENSSLUG00000011275	ENSSLUG00000011280	PLCL2 (ENSSLUG00000011282)	ENSSLUG00000011288	ENSSLUG00000011291 ##26	VMO1 (ENSSLUG00000011297)	ENSSLUG00000011306	ENSSLUG00000011353	BRD2 (ENSSLUG00000011362)	TAP1 (ENSSLUG00000011387)	ENSSLUG00000011438	ENSSLUG00000011444	ENSSLUG00000011448	ENSSLUG00000011452	pbx2 (ENSSLUG00000011463)
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000012006	ENSCGOG00000012000	septin7b (ENSCGOG00000009264)	ENSCGOG00000009157	ENSCGOG00000009042	ENSCGOG00000009041	ENSCGOG00000006533	nr1d2a (ENSCGOG00000006531)	ube2e2 (ENSCGOG00000006482)	ENSCGOG00000006480	ZNF385D (ENSCGOG00000006444)	rab5ab (ENSCGOG00000006398)	ENSCGOG00000006394	si:dkey-82o10.4 (ENSCGOG00000006392) #17	ENSCGOG00000006391	ENSCGOG00000006390 ##22	PLCL2 (ENSCGOG00000006389)	ENSCGOG00000006379	ENSCGOG00000006375 ##26	ENSCGOG00000006365	ENSCGOG00000006358	ENSCGOG00000006356	BRD2 (ENSCGOG00000006342)	ENSCGOG00000006190	ENSCGOG00000006180	pbx2 (ENSCGOG00000006093)	ENSCGOG00000006086	dnase2 (ENSCGOG00000006074)	rgl2 (ENSCGOG00000006053)	PHF1 (ENSCGOG00000006000)	SYNGAP1 (ENSCGOG00000005965)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000264199	ENSGT00940000163911.b.d	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d.f	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000264199	ENSGT00940000163911.b.d	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d.f	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198621	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
European seabass	MODERN SPECIES	6	ENSDLAG00005027329	ENSDLAG00005006288	ENSDLAG00005006334	ENSDLAG00005012619	ENSDLAG00005026338	ENSDLAG00005032492	ENSDLAG00005002483	ENSDLAG00005030257	ENSDLAG00005006346	nr1d2a (ENSDLAG00005006356)	ENSDLAG00005029927	ENSDLAG00005006428	rab5ab (ENSDLAG00005006454)	ENSDLAG00005006486	si:dkey-82o10.4 (ENSDLAG00005027369) #17	ENSDLAG00005006541 ##22	ENSDLAG00005006563	ENSDLAG00005006566	ENSDLAG00005006573 ##26	ENSDLAG00005006588	ENSDLAG00005006608	ENSDLAG00005006626	ENSDLAG00005006777	ENSDLAG00005006778	pbx2 (ENSDLAG00005029739)	rgl2 (ENSDLAG00005006798)	ENSDLAG00005006786	dnase2 (ENSDLAG00005006794)	ENSDLAG00005006830	ENSDLAG00005006852	smg5 (ENSDLAG00005007093)
Large yellow croaker	MODERN SPECIES	484	ankmy2a (ENSLCRG00005005040)	ENSLCRG00005005036	septin7b (ENSLCRG00005003411)	NEK10 (ENSLCRG00005003389)	ENSLCRG00005003384	ENSLCRG00005003380	ENSLCRG00005003375	ENSLCRG00005003373	ENSLCRG00005003371	ENSLCRG00005003370	nr1d2a (ENSLCRG00005003368)	UBE2E2 (ENSLCRG00005003357)	ZNF385D (ENSLCRG00005003348)	rab5ab (ENSLCRG00005003337)	si:dkey-82o10.4 (ENSLCRG00005003333) #17	ENSLCRG00005003322 ##22	PLCL2 (ENSLCRG00005003317)	ENSLCRG00005003098	ENSLCRG00005003090 ##26	VMO1 (ENSLCRG00005003089)	ENSLCRG00005003086	ENSLCRG00005003077	BRD2 (ENSLCRG00005003074)	ENSLCRG00005002961	ENSLCRG00005002952	ENSLCRG00005002949	ENSLCRG00005002946	ENSLCRG00005002943	ENSLCRG00005002941	pbx2 (ENSLCRG00005002936)	ENSLCRG00005002934
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010017371	ENSSAUG00010017367	septin7b (ENSSAUG00010016009)	NEK10 (ENSSAUG00010015986)	ENSSAUG00010015983	ENSSAUG00010015981	ENSSAUG00010015980	ENSSAUG00010015978	ENSSAUG00010015976	nr1d2a (ENSSAUG00010015973)	ube2e2 (ENSSAUG00010015970)	ZNF385D (ENSSAUG00010015964)	ENSSAUG00010015960	ENSSAUG00010015957	efhb (ENSSAUG00010015955)	ENSSAUG00010015952 ##22	PLCL2 (ENSSAUG00010015951)	ENSSAUG00010015948	ENSSAUG00010015945	ENSSAUG00010015940 ##26	VMO1 (ENSSAUG00010015935)	ENSSAUG00010015553	ENSSAUG00010015551	BRD2 (ENSSAUG00010015549)	ENSSAUG00010015502	ENSSAUG00010015501	ENSSAUG00010015499	pbx2 (ENSSAUG00010015497)	ENSSAUG00010015496	dnase2 (ENSSAUG00010015495)	rgl2 (ENSSAUG00010015490)
Tetraodontidae	ANCESTRAL SPECIES	90		ENSGT00390000016820.d	ENSGT00390000006412	ENSGT00440000033807	ENSGT00940000157123	ENSGT00940000154546.a	ENSGT00390000005530.a.b	ENSGT00390000015038	ENSGT00940000154222.d.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313
Fugu	MODERN SPECIES	19	ankmy2a (ENSTRUG00000007409)	crppa (ENSTRUG00000023271)	agmo (ENSTRUG00000007716)	etv1 (ENSTRUG00000007749)	arl4aa (ENSTRUG00000008027)	ICA1 (ENSTRUG00000008358)	mios (ENSTRUG00000008541)	septin7b (ENSTRUG00000020615)	ENSTRUG00000025273	nr1d2a (ENSTRUG00000009180)	ENSTRUG00000029523	UBE2E2 (ENSTRUG00000027463)	ZNF385D (ENSTRUG00000009746)	rab5ab (ENSTRUG00000025111)	ENSTRUG00000009870	ENSTRUG00000009881 ##22	PLCL2 (ENSTRUG00000001554)	ENSTRUG00000021304	ENSTRUG00000003431 ##26	ENSTRUG00000003662	dtnbp1a (ENSTRUG00000003753)	fbl (ENSTRUG00000004408)	ENSTRUG00000024586	ppox (ENSTRUG00000005004)	SLC6A20 (ENSTRUG00000005349)	ggctb (ENSTRUG00000006044)	TCAIM (ENSTRUG00000006056)	cnot10 (ENSTRUG00000006110)	calhm5.1 (ENSTRUG00000006659)	rwdd1 (ENSTRUG00000030520)	zufsp (ENSTRUG00000006918)
Tetraodon	MODERN SPECIES	26	THSD7A (ENSTNIG00000011651)	ENSTNIG00000011652	ICA1 (ENSTNIG00000011653)	mios (ENSTNIG00000011654)	ENSTNIG00000000520	septin7b (ENSTNIG00000011655)	nr1d2a (ENSTNIG00000011656)	ENSTNIG00000000401	ENSTNIG00000011657	septin7b (ENSTNIG00000011658)	ube2e2 (ENSTNIG00000011659)	ENSTNIG00000011660	rab5ab (ENSTNIG00000011661)	ENSTNIG00000001442	ENSTNIG00000011662	ENSTNIG00000011663 ##22	PLCL2 (ENSTNIG00000011664)	ENSTNIG00000001684	ENSTNIG00000011665 ##26	VMO1 (ENSTNIG00000011666)	dtnbp1a (ENSTNIG00000011667)	fbl (ENSTNIG00000011668)	rbm42 (ENSTNIG00000011669)	ppox (ENSTNIG00000011670)	SLC6A20 (ENSTNIG00000011671)	ggctb (ENSTNIG00000011672)	ENSTNIG00000011673	cnot10 (ENSTNIG00000011674)	rwdd1 (ENSTNIG00000011675)	ENSTNIG00000011676	ADCY3 (ENSTNIG00000011677)
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000169840	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000178830	ENSGT00940000162790.a.v	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT01100000263625.B	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.b	ENSGT00940000174959	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000178830	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00950000183127.c.a	ENSGT00940000178830	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e
Amphiprion	ANCESTRAL SPECIES	1	ENSGT01100000263473.a.b.g.b	ENSGT01100000263625.A	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000158153.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000178830	ENSGT00950000183127.c.a	ENSGT00940000161847.b.b	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.h	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000023826	ENSAPEG00000023762	ENSAPEG00000023751	ENSAPEG00000023742	ENSAPEG00000023721	ENSAPEG00000023712	ENSAPEG00000023705	nr1d2a (ENSAPEG00000023699)	ube2e1 (ENSAPEG00000023680)	ube2e2 (ENSAPEG00000023663)	ENSAPEG00000023643	ENSAPEG00000023616	rab5ab (ENSAPEG00000023587)	ENSAPEG00000023557	si:dkey-82o10.4 (ENSAPEG00000023551) #17	ENSAPEG00000023537 ##22	ENSAPEG00000023503	PLCL2 (ENSAPEG00000023490)	ENSAPEG00000023435	ENSAPEG00000023425 ##26	ENSAPEG00000023414 ##26	ENSAPEG00000023398	ENSAPEG00000023356	ENSAPEG00000023344	BRD2 (ENSAPEG00000023337)	ENSAPEG00000023306	ENSAPEG00000023290	ENSAPEG00000023287	her7 (ENSAPEG00000023260)	pbx2 (ENSAPEG00000023234)	ENSAPEG00000023227
Clown anemonefish	MODERN SPECIES	641											ZNF385D (ENSAOCG00000004740)	ENSAOCG00000004723	rab5ab (ENSAOCG00000004713)	efhb (ENSAOCG00000024768)	si:dkey-82o10.4 (ENSAOCG00000024763) #17	ENSAOCG00000024758 ##22	ENSAOCG00000024752
Spiny chromis	MODERN SPECIES	162									ENSAPOG00000019600	UBE2E2 (ENSAPOG00000019589)	ZNF385D (ENSAPOG00000019566)	ENSAPOG00000019539	rab5ab (ENSAPOG00000000551)	efhb (ENSAPOG00000000544)	si:dkey-82o10.4 (ENSAPOG00000019496) #17	ENSAPOG00000019486 ##22	PLCL2 (ENSAPOG00000019405)	ENSAPOG00000019352	ENSAPOG00000019341 ##26
Bicolor damselfish	MODERN SPECIES	519									ube2e1 (ENSSPAG00000014035)	ube2e2 (ENSSPAG00000014016)	ENSSPAG00000013937	ENSSPAG00000013907	rab5ab (ENSSPAG00000013881)	ENSSPAG00000013840	si:dkey-82o10.4 (ENSSPAG00000013825) #17	ENSSPAG00000013738 ##22
Cichlidae	ANCESTRAL SPECIES	9	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000266356	ENSGT00940000177646	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000266356	ENSGT00940000177488	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000266356	ENSGT00940000177488.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g.d	ENSGT00700000104815.g.c	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000266356	ENSGT00940000177488.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g.d	ENSGT00700000104815.g.c	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Burton s mouthbrooder	MODERN SPECIES	327								ENSHBUG00000007676	nr1d2a (ENSHBUG00000007724)	ube2e1 (ENSHBUG00000007753)	ube2e2 (ENSHBUG00000007782)	ENSHBUG00000007847	rab5ab (ENSHBUG00000007871)	si:dkey-82o10.4 (ENSHBUG00000007878) #17	ENSHBUG00000007886	ENSHBUG00000007961 ##22	PLCL2 (ENSHBUG00000008003)	ENSHBUG00000008025	ENSHBUG00000008036 ##26	VMO1 (ENSHBUG00000008051)	BRD2 (ENSHBUG00000008131)	ENSHBUG00000008157	ENSHBUG00000008197	ENSHBUG00000008212	her7 (ENSHBUG00000008231)	pbx2 (ENSHBUG00000008278)	ENSHBUG00000001065	dnase2 (ENSHBUG00000008304)	rgl2 (ENSHBUG00000008416)	ENSHBUG00000008432	SYNGAP1 (ENSHBUG00000008524)
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000266356	ENSGT01030000234907.k	ENSGT00940000163911.a.a.b.a.a.a.a.a.a	ENSGT00940000177488.b	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g.d	ENSGT00700000104815.g.c	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
P. nyererei	MODERN SPECIES	433							ENSPNYG00000012393	ENSPNYG00000012409	nr1d2a (ENSPNYG00000012463)	ube2e1 (ENSPNYG00000012540)	ube2e2 (ENSPNYG00000012556)	ZNF385D (ENSPNYG00000012576)	rab5ab (ENSPNYG00000012596)	efhb (ENSPNYG00000012619)	si:dkey-82o10.4 (ENSPNYG00000012649) #17	ENSPNYG00000012678 ##22	PLCL2 (ENSPNYG00000012715)	ENSPNYG00000012749	ENSPNYG00000012774 ##26	VMO1 (ENSPNYG00000012791)	BRD2 (ENSPNYG00000012798)	brd2b (ENSPNYG00000012810)	ENSPNYG00000012832	ENSPNYG00000012855	her7 (ENSPNYG00000012880)	her7 (ENSPNYG00000012890)	pbx2 (ENSPNYG00000012906)	ENSPNYG00000012935	dnase2 (ENSPNYG00000012955)	rgl2 (ENSPNYG00000012979)	PHF1 (ENSPNYG00000013037)
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT01090000260131.d	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000266356	ENSGT01030000234907.k	ENSGT00940000163911.a.a.b.a.a.a.a.a.a	ENSGT00940000177488.a	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g.d	ENSGT00700000104815.g.c	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n
Zebra mbuna	MODERN SPECIES	1093	nr2f5 (ENSMZEG00005016355)	ENSMZEG00005016349	rpz (ENSMZEG00005016345)	rpz6 (ENSMZEG00005016342)	rpz5 (ENSMZEG00005016335)	rpz4 (ENSMZEG00005016332)	ENSMZEG00005016322	nr1d2a (ENSMZEG00005016315)	ube2e1 (ENSMZEG00005016310)	ube2e2 (ENSMZEG00005016306)	ENSMZEG00005016299	ZNF385D (ENSMZEG00005016295)	rab5ab (ENSMZEG00005016286)	efhb (ENSMZEG00005016283)	si:dkey-82o10.4 (ENSMZEG00005016280) #17	ENSMZEG00005016275 ##22	PLCL2 (ENSMZEG00005016252)	ENSMZEG00005016241	ENSMZEG00005016237 ##26	VMO1 (ENSMZEG00005016227)	BRD2 (ENSMZEG00005016215)	ENSMZEG00005016207	ENSMZEG00005016203	her7 (ENSMZEG00005016198)	her7 (ENSMZEG00005016194)	pbx2 (ENSMZEG00005016188)	ENSMZEG00005016184	dnase2 (ENSMZEG00005016176)	rgl2 (ENSMZEG00005016157)	PHF1 (ENSMZEG00005016144)	SYNGAP1 (ENSMZEG00005015849)
Eastern happy	MODERN SPECIES	2	ENSACLG00000007255	septin7b (ENSACLG00000007305)	NEK10 (ENSACLG00000007364)	ENSACLG00000007410	ENSACLG00000007424	ENSACLG00000007431	ENSACLG00000007436	ENSACLG00000007452	nr1d2a (ENSACLG00000007461)	ube2e1 (ENSACLG00000007468)	ube2e2 (ENSACLG00000007476)	ZNF385D (ENSACLG00000007489)	rab5ab (ENSACLG00000007499)	efhb (ENSACLG00000007516)	si:dkey-82o10.4 (ENSACLG00000007548) #17	ENSACLG00000007560 ##22	ENSACLG00000008402	PLCL2 (ENSACLG00000008409)	ENSACLG00000008435	ENSACLG00000008793 ##26	VMO1 (ENSACLG00000008801)	BRD2 (ENSACLG00000008805)	ENSACLG00000008829	ENSACLG00000008848	ENSACLG00000008868	ENSACLG00000008872	her7 (ENSACLG00000008874)	pbx2 (ENSACLG00000008881)	ENSACLG00000008899	dnase2 (ENSACLG00000008911)	rgl2 (ENSACLG00000008918)
Lyretail cichlid	MODERN SPECIES	373								ENSNBRG00000003404	ENSNBRG00000003424	ube2e1 (ENSNBRG00000003441)	ube2e2 (ENSNBRG00000003465)	ENSNBRG00000003485	rab5ab (ENSNBRG00000003511)	ENSNBRG00000003533	si:dkey-82o10.4 (ENSNBRG00000003573) #17	ENSNBRG00000003602 ##22	PLCL2 (ENSNBRG00000003643)	ENSNBRG00000003663	ENSNBRG00000003691 ##26	VMO1 (ENSNBRG00000003710)	BRD2 (ENSNBRG00000003729)	brd2b (ENSNBRG00000003756)	ENSNBRG00000003793	ENSNBRG00000004026	ENSNBRG00000004056	pbx2 (ENSNBRG00000004069)	ENSNBRG00000004087	ENSNBRG00000004106	dnase2 (ENSNBRG00000004163)	rgl2 (ENSNBRG00000004175)	PHF1 (ENSNBRG00000004222)
Nile tilapia	MODERN SPECIES	2	col28a1b (ENSONIG00000006506)	ENSONIG00000006503	septin7b (ENSONIG00000006499)	NEK10 (ENSONIG00000006494)	ENSONIG00000006493	ENSONIG00000035953	ENSONIG00000035927	nr1d2a (ENSONIG00000008699)	ube2e1 (ENSONIG00000008697)	ENSONIG00000040396	ube2e2 (ENSONIG00000008694)	ENSONIG00000027430	rab5ab (ENSONIG00000008693)	ENSONIG00000008692	si:dkey-82o10.4 (ENSONIG00000008690) #17	ENSONIG00000008688 ##22	PLCL2 (ENSONIG00000008687)	ENSONIG00000008685	ENSONIG00000033096 ##26	ENSONIG00000008684	BRD2 (ENSONIG00000008676)	tap1 (ENSONIG00000008663)	her7 (ENSONIG00000008659)	ENSONIG00000043049	her7 (ENSONIG00000032325)	pbx2 (ENSONIG00000008651)	dnase2 (ENSONIG00000008649)	rgl2 (ENSONIG00000008644)	ENSONIG00000033348	SYNGAP1 (ENSONIG00000008635)	smg5 (ENSONIG00000008632)
Midas cichlid	MODERN SPECIES	299	PDE4D (ENSACIG00000002655)	rab3c (ENSACIG00000002628)	si:dkey-190g11.3 (ENSACIG00000002612)	plk2b (ENSACIG00000002477)	ENSACIG00000002465	ENSACIG00000002451	ENSACIG00000002442	ENSACIG00000002436	nr1d2a (ENSACIG00000002393)	ube2e1 (ENSACIG00000002370)	ube2e2 (ENSACIG00000002355)	ENSACIG00000002340	rab5ab (ENSACIG00000002327)	ENSACIG00000002302	si:dkey-82o10.4 (ENSACIG00000002250) #17	ENSACIG00000002221 ##22	PLCL2 (ENSACIG00000002211)	ENSACIG00000002198	pcca (ENSACIG00000002187)	ENSACIG00000002160 ##26	VMO1 (ENSACIG00000002148)	BRD2 (ENSACIG00000001934)	ENSACIG00000001709	ENSACIG00000001675	ENSACIG00000001660	her7 (ENSACIG00000001647)	pbx2 (ENSACIG00000001624)	ENSACIG00000001606	dnase2 (ENSACIG00000001586)	rgl2 (ENSACIG00000001540)	PHF1 (ENSACIG00000001474)
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000169840	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b.o.a	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT01100000263473.a.b.g.b.n	ENSGT00940000169840.i	ENSGT01030000234907.i.a.a.a	ENSGT01030000234907.j	ENSGT00940000169840.j	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b	ENSGT00950000182883.a.b.b	ENSGT00940000155427.a	ENSGT00940000158360	ENSGT00940000165119	ENSGT00940000160835	ENSGT00940000163868	ENSGT00940000154546.a	ENSGT00940000157123	ENSGT00940000159770
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000169840.i.d	ENSGT01030000234907.i.a.a.a	ENSGT00940000169840.i.c	ENSGT01100000263473.a.b.g.b.o.a.a	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT01100000263473.a.b.g.b.n	ENSGT01030000234907.i.b	ENSGT01030000234907.j	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00980000198854	ENSGT00530000063609.b.w ##26	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b	ENSGT00950000182883.a.b.b	ENSGT00940000155427.a	ENSGT00940000158360	ENSGT00940000165119	ENSGT00940000163868	ENSGT00940000154546.a	ENSGT00940000157123	ENSGT00940000159770	ENSGT00440000033807
Indian medaka	MODERN SPECIES	33	ENSOMEG00000022242	ENSOMEG00000022276	ENSOMEG00000022300	ENSOMEG00000022318	ENSOMEG00000022346	ENSOMEG00000022376	ENSOMEG00000003129	ENSOMEG00000003135	nr1d2a (ENSOMEG00000003152)	ube2e1 (ENSOMEG00000003189)	ube2e2 (ENSOMEG00000003207)	ENSOMEG00000003262	rab5ab (ENSOMEG00000003287)	ENSOMEG00000003311	si:dkey-82o10.4 (ENSOMEG00000000068) #17	ENSOMEG00000003378 ##22	PLCL2 (ENSOMEG00000003409)	ENSOMEG00000003437	ENSOMEG00000003470 ##26	mios (ENSOMEG00000003487)	ENSOMEG00000003512	ICA1 (ENSOMEG00000003531)	ENSOMEG00000003541	ENSOMEG00000003550	THSD7A (ENSOMEG00000003639)	ENSOMEG00000003681	tmem106ba (ENSOMEG00000003696)	seraf (ENSOMEG00000003721)	VWDE (ENSOMEG00000003813)	arl4aa (ENSOMEG00000003868)	etv1 (ENSOMEG00000001021)
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000003137	ENSOJAG00000003134	tspan13a (ENSOJAG00000003124)	bag6 (ENSOJAG00000002901)	glrx3 (ENSOJAG00000002871)	ENSOJAG00000002868	ENSOJAG00000002860	tnfb (ENSOJAG00000002856)	ENSOJAG00000002723	sh3bp5la (ENSOJAG00000002673)	mgat1a (ENSOJAG00000002663)	dhx16 (ENSOJAG00000002533)	ppt2a.2 (ENSOJAG00000002484)	si:dkey-82o10.4 (ENSOJAG00000002477) #17	ENSOJAG00000002465	ENSOJAG00000002425 ##22	PLCL2 (ENSOJAG00000002226)	ENSOJAG00000002157	ENSOJAG00000002151 ##26	mios (ENSOJAG00000002131)	GLCCI1 (ENSOJAG00000002093)	ICA1 (ENSOJAG00000001980)	ENSOJAG00000001964	THSD7A (ENSOJAG00000020709)	tmem106ba (ENSOJAG00000020688)	seraf (ENSOJAG00000020685)	ENSOJAG00000020670	arl4aa (ENSOJAG00000020647)	etv1 (ENSOJAG00000020514)	DGKB (ENSOJAG00000019976)	agmo (ENSOJAG00000019912)
Oryzias_a	ANCESTRAL SPECIES	50								ENSGT01030000234907.j	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b	ENSGT00950000182883.a.b.b	ENSGT00940000155427.a	ENSGT00940000158360	ENSGT00940000165119	ENSGT00940000160835	ENSGT00940000154546.a	ENSGT00940000157123	ENSGT00940000159770	ENSGT00440000033807
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000029211	ENSORLG00000016415	ENSORLG00000024079	ENSORLG00000026659	ENSORLG00000023622	ENSORLG00000023461	ENSORLG00000022431	ENSORLG00000022834	nr1d2a (ENSORLG00000016431)	ENSORLG00000016439	ube2e2 (ENSORLG00000008144)	ENSORLG00000016445	rab5ab (ENSORLG00000016458)	ENSORLG00000024278	si:dkey-82o10.4 (ENSORLG00000016467) #17	ENSORLG00000016485 ##22	ENSORLG00000027816	PLCL2 (ENSORLG00000016501)	ENSORLG00000016514	ENSORLG00000016518 ##26	mios (ENSORLG00000016548)	ENSORLG00000016553	ICA1 (ENSORLG00000016560)	ENSORLG00000016566	THSD7A (ENSORLG00000016584)	tmem106ba (ENSORLG00000016598)	seraf (ENSORLG00000029376)	VWDE (ENSORLG00000016604)	arl4aa (ENSORLG00000029448)	etv1 (ENSORLG00000016618)	DGKB (ENSORLG00000016686)
Chinese medaka	MODERN SPECIES	4627															ENSOSIG00000002844	ENSOSIG00000002846 ##22
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000169840	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000161647	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01030000234907	ENSGT00940000169840	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.b	ENSGT00940000154337.a.a	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00700000104815.g	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566
Mangrove rivulus	MODERN SPECIES	428														rab5ab (ENSKMAG00000010233)	efhb (ENSKMAG00000010191)	ENSKMAG00000010152 ##22
Turquoise killifish	MODERN SPECIES	1614	GLCCI1 (ENSNFUG00015011039)	mios (ENSNFUG00015011015)	ENSNFUG00015010963	septin7b (ENSNFUG00015009531)	ENSNFUG00015009302	ENSNFUG00015009280	ENSNFUG00015009262	nr1d2a (ENSNFUG00015009256)	ENSNFUG00015009246	OLA.21581 (ENSNFUG00015009220)	UBE2E2 (ENSNFUG00015009191)	ENSNFUG00015009177	ZNF385D (ENSNFUG00015009166)	RAB5AB (ENSNFUG00015009144)	EFHB (ENSNFUG00015009106)	ENSNFUG00015009014 ##22	PLCL2 (ENSNFUG00015005490)	ENSNFUG00015005483	nod2 (ENSNFUG00015005451)	RFTN1 (ENSNFUG00015005432) ##26	VMO1 (ENSNFUG00015005415)	BRD2B (ENSNFUG00015005395)	ENSNFUG00015005368	ENSNFUG00015005354	ENSNFUG00015005346	PBX2 (ENSNFUG00015005329)	ENSNFUG00015005318	DNASE2 (ENSNFUG00015005306)	rgl2 (ENSNFUG00015005264)	ENSNFUG00015005229	ENSNFUG00015005224
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b	ENSGT01030000234907	ENSGT00940000163911.a.a.b.a.a.a.a.b	ENSGT00940000169840	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00950000183111.b.b.l.a.b.b	ENSGT00950000182929.B.a.a.e	ENSGT00950000182929.B.a.a.f	ENSGT00950000182929.B.b.b	ENSGT00610000087424	ENSGT00740000117171	ENSGT00390000015918	ENSGT00940000172196
Poeciliinae	ANCESTRAL SPECIES		ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b	ENSGT00940000169840.f	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00950000183111.b.b.l.a.b.b	ENSGT00950000182929.B.a.a.e	ENSGT00950000182929.B.a.a.f	ENSGT00950000182929.B.b.b	ENSGT00610000087424	ENSGT00740000117171	ENSGT00390000015918	ENSGT00940000172196
Platyfish	MODERN SPECIES	17	ENSXMAG00000025220	ENSXMAG00000028298	ENSXMAG00000026941	ENSXMAG00000023982	ENSXMAG00000028670	ENSXMAG00000021804	ENSXMAG00000021306	nr1d2a (ENSXMAG00000018709)	ube2e1 (ENSXMAG00000026946)	ube2e2 (ENSXMAG00000018694)	ENSXMAG00000022169	ENSXMAG00000021593	rab5ab (ENSXMAG00000018687)	ENSXMAG00000023769	si:dkey-82o10.4 (ENSXMAG00000024846) #17	ENSXMAG00000018662 ##22	PLCL2 (ENSXMAG00000018656)	ENSXMAG00000018655	ENSXMAG00000025035 ##26	ENSXMAG00000018653	BRD2 (ENSXMAG00000018629)	TAP1 (ENSXMAG00000018614)	ENSXMAG00000018613	ENSXMAG00000018608	ENSXMAG00000018603	apoeb (ENSXMAG00000018601)	ENSXMAG00000029967	apoa2 (ENSXMAG00000018597)	ENSXMAG00000025479	ENSXMAG00000026330	ENSXMAG00000018579
Poecilia	ANCESTRAL SPECIES		ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT01100000263473.a.b.g.b	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00950000183111.b.b.l.a.b.b.e	ENSGT00950000183111.b.b.l.a.b.b.f	ENSGT00950000182929.B.a.a.e	ENSGT00950000182929.B.a.a.f	ENSGT00950000182929.B.b.b	ENSGT00610000087424	ENSGT00740000117171	ENSGT00390000015918
Guppy	MODERN SPECIES	446	mgat1a (ENSPREG00000003466)	sh3bp5la (ENSPREG00000003480)	GABBR1 (ENSPREG00000003518)	tnfb (ENSPREG00000003585)	ENSPREG00000003598	ENSPREG00000003625	glrx3 (ENSPREG00000003648)	bag6 (ENSPREG00000003677)	tspan13a (ENSPREG00000003818)	ENSPREG00000003838	ENSPREG00000003849	ENSPREG00000003866	rab5ab (ENSPREG00000003887)	ENSPREG00000003912	si:dkey-82o10.4 (ENSPREG00000003946) #17	ENSPREG00000003992 ##22	PLCL2 (ENSPREG00000004061)	ENSPREG00000004098	ENSPREG00000004117 ##26	ENSPREG00000004130	BRD2 (ENSPREG00000004149)	TAP1 (ENSPREG00000004235)	ENSPREG00000004338	ENSPREG00000004372	ENSPREG00000004488	ENSPREG00000004528	ENSPREG00000004592	ENSPREG00000004600	apoeb (ENSPREG00000004614)	ENSPREG00000004624	ENSPREG00000004646
NAME_6	ANCESTRAL SPECIES	336											ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606
Amazon molly	MODERN SPECIES	616											UBE2E2 (ENSPFOG00000004536)	ZNF385D (ENSPFOG00000004434)	rab5ab (ENSPFOG00000004293)	ENSPFOG00000004265	si:dkey-82o10.4 (ENSPFOG00000004252) #17	ENSPFOG00000003900 ##22
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	309																ENSPLAG00000019909 ##22	PLCL2 (ENSPLAG00000019879)	ENSPLAG00000019861	ENSPLAG00000019843 ##26	ENSPLAG00000019834	ENSPLAG00000019813	TAP1 (ENSPLAG00000019802)	ENSPLAG00000019772
Sailfin molly	MODERN SPECIES	2660															ENSPLAG00000003160	ENSPLAG00000000627 ##22
NAME_4	ANCESTRAL SPECIES	55						ENSGT01100000263473.a.b.g.b	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a	ENSGT00940000168259	ENSGT00940000154337.b	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00390000008096.C.a ##22	ENSGT00940000155660.b	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00940000153385.b.a.b.fd.b	ENSGT00940000159023	ENSGT00980000198606	ENSGT00950000183111.b.b.l.a.b.b	ENSGT00950000182929.B.a.a.e	ENSGT00950000182929.B.a.a.f	ENSGT00950000182929.B.b.b	ENSGT00610000087424	ENSGT00740000117171	ENSGT00390000015918	ENSGT00390000007913
Mummichog	MODERN SPECIES	2392									nr1d2a (ENSFHEG00000008731)	ube2e1 (ENSFHEG00000008719)	ube2e2 (ENSFHEG00000008700)	ZNF385D (ENSFHEG00000008669)	ENSFHEG00000008574	ENSFHEG00000008525	si:dkey-82o10.4 (ENSFHEG00000008509) #17	ENSFHEG00000008485 ##22	PLCL2 (ENSFHEG00000008421)	ENSFHEG00000008397	ENSFHEG00000008372 ##26	ENSFHEG00000008365	ENSFHEG00000000573	ENSFHEG00000008327	ENSFHEG00000008180	ENSFHEG00000000617	ENSFHEG00000008107	ENSFHEG00000007917
Sheepshead minnow	MODERN SPECIES	178												ZNF385D (ENSCVAG00000019272)	rab5ab (ENSCVAG00000019248)	ENSCVAG00000019219	si:dkey-82o10.4 (ENSCVAG00000019192) #17	ENSCVAG00000019170 ##22	PLCL2 (ENSCVAG00000019025)	ENSCVAG00000018996	ENSCVAG00000018971 ##26	ENSCVAG00000018955	ENSCVAG00000018940	BRD2 (ENSCVAG00000018837)	ENSCVAG00000018733	ENSCVAG00000018708	ENSCVAG00000018601	ENSCVAG00000018584	ENSCVAG00000018568	apoeb (ENSCVAG00000018559)	ENSCVAG00000018555	apoa2 (ENSCVAG00000018548)	ENSCVAG00000018538
Clupeocephala	ANCESTRAL SPECIES	190											ENSGT00940000160242.b	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00940000154337.a.b	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f	ENSGT00940000155957.b
Otomorpha	ANCESTRAL SPECIES	172												ENSGT00940000154995	ENSGT00940000154337.b	ENSGT00940000168259	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f	ENSGT00940000155957.b	ENSGT01030000234992
Otophysi	ANCESTRAL SPECIES	152															ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f	ENSGT00940000155957.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b
Cyprinoidei	ANCESTRAL SPECIES	33	ENSGT00390000003774.a.a.c	ENSGT00940000157616.j.a	ENSGT00940000157071	ENSGT00940000159356.a.b.b	ENSGT01050000244841.A.b.a.b.a.a.i	ENSGT00390000014772.k	ENSGT00940000161408	ENSGT00950000183051.a.a.a	ENSGT00940000156500	ENSGT00390000010779.a.b.a	ENSGT00530000063631.a.k	ENSGT00390000006540	ENSGT00940000154995	ENSGT00940000154337.b	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f	ENSGT00940000155957.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	115	ENSGT00940000159356.a.b.b.b	ENSGT01050000244841.A.b.a.b.a.a.i.a	ENSGT00390000014772.k.e	ENSGT00940000161408.a	ENSGT00950000183051.a.a.a.a	ENSGT00940000156500.e	ENSGT00390000010779.a.b.a.f	ENSGT00530000063631.a.k.b	ENSGT00510000047030.d.q.b	ENSGT00390000006540.f	ENSGT00940000154995.fb	ENSGT00940000154337.b.f	ENSGT00940000168259	ENSGT00390000008096.C.a.b ##22	ENSGT00940000156869.i	ENSGT00390000008096.C.b.a ##22	ENSGT00940000157121.g	ENSGT00530000063480.b.p ##24	ENSGT00530000063609.b.x.q.a ##26	ENSGT00390000004280.a	ENSGT00950000183188.B.j	ENSGT00940000154957.B.a	ENSGT00940000157167.`b
Goldfish	MODERN SPECIES	10	atp9b (ENSCARG00000018289)	sall3b (ENSCARG00000018144)	ENSCARG00000018113	ENSCARG00000023108	znf516 (ENSCARG00000023096)	tshz1 (ENSCARG00000023087)	cndp2 (ENSCARG00000022692)	txnl4a (ENSCARG00000022641)	adnp2b (ENSCARG00000022636)	nutf2l (ENSCARG00000022627)	ENSCARG00000022623	ngly1 (ENSCARG00000022617)	kat2b (ENSCARG00000020707)	rab5aa (ENSCARG00000020626)	KCNH8 (ENSCARG00000020573)	satb1a (ENSCARG00000020567) ##22	tbc1d5 (ENSCARG00000020443)	dazl (ENSCARG00000020409) ##24	ENSCARG00000020405 ##26	oxnad1 (ENSCARG00000020398)	GPNMB (ENSCARG00000020368)	igf2bp3 (ENSCARG00000019683)	tra2a (ENSCARG00000019610)	fam221a (ENSCARG00000019601)	npy (ENSCARG00000019590)	ENSCARG00000019221	ENSCARG00000019190	osbpl3a (ENSCARG00000019140)	npvf (ENSCARG00000019116)	nfe2l3 (ENSCARG00000019112)	cbx3a (ENSCARG00000019073)
Cyprininae_a	ANCESTRAL SPECIES	52	ENSGT00940000159356.a.b.b.b	ENSGT01050000244841.A.b.a.b.a.a.i.a	ENSGT00390000014772.k.e	ENSGT00940000161408.a	ENSGT00950000183051.a.a.a.a	ENSGT00940000156500.e	ENSGT00390000010779.a.b.a.f	ENSGT00530000063631.a.k.b	ENSGT00510000047030.d.q.b	ENSGT00390000006540.f	ENSGT00940000154995.fb	ENSGT00940000154337.b.f	ENSGT00940000168259	ENSGT00390000008096.C.a.b ##22	ENSGT00940000156869.i	ENSGT00390000008096.C.b.a ##22	ENSGT00940000157121.g	ENSGT00530000063480.b.p ##24	ENSGT00530000063609.b.x.q.a ##26	ENSGT00390000004280.a	ENSGT00950000183188.B.j	ENSGT00940000154957.B.a	ENSGT00940000157167.`b
Common carp reference	MODERN SPECIES	12	ENSCCRG00000061462	atp9b (ENSCCRG00000040711)	sall3b (ENSCCRG00000079531)	GALR1 (ENSCCRG00000069851)	ENSCCRG00000058472	znf516 (ENSCCRG00000026041)	tshz1 (ENSCCRG00000055930)	ENSCCRG00000043638	cndp2 (ENSCCRG00000020392)	txnl4a (ENSCCRG00000021097)	adnp2b (ENSCCRG00000021092)	ngly1 (ENSCCRG00000021036)	kat2b (ENSCCRG00000069798)	ENSCCRG00000077868	KCNH8 (ENSCCRG00000023886)	satb1a (ENSCCRG00000024007) ##22	tbc1d5 (ENSCCRG00000023940)	dazl (ENSCCRG00000023883) ##24	RFTN1 (ENSCCRG00000023881) ##26	oxnad1 (ENSCCRG00000023876)	GPNMB (ENSCCRG00000023873)	igf2bp3 (ENSCCRG00000030227)	tra2a (ENSCCRG00000062498)	fam221a (ENSCCRG00000037999)	ENSCCRG00000038004	ENSCCRG00000038010	OSBPL3 (ENSCCRG00000010797)	ENSCCRG00000037612	npvf (ENSCCRG00000074653)	nfe2l3 (ENSCCRG00000071197)	CBX3 (ENSCCRG00000080967)
Golden-line barbel	MODERN SPECIES	148	slc52a2 (ENSSGRG00000052190)	ENSSGRG00000052189	nfatc1 (ENSSGRG00000052172)	atp9b (ENSSGRG00000051577)	sall3b (ENSSGRG00000051568)	GALR1 (ENSSGRG00000051567)	ENSSGRG00000051562	znf516 (ENSSGRG00000051559)	tshz1 (ENSSGRG00000051558)	cndp2 (ENSSGRG00000051541)	txnl4a (ENSSGRG00000051535)	adnp2b (ENSSGRG00000051534)	nutf2l (ENSSGRG00000051532)	kat2b (ENSSGRG00000051507)	KCNH8 (ENSSGRG00000051506)	satb1a (ENSSGRG00000051505) ##22	tbc1d5 (ENSSGRG00000051406)	dazl (ENSSGRG00000051384) ##24	ENSSGRG00000051383 ##26	oxnad1 (ENSSGRG00000051382)	GPNMB (ENSSGRG00000051381)	ENSSGRG00000051380	igf2bp3 (ENSSGRG00000050552)	tra2a (ENSSGRG00000050536)	fam221a (ENSSGRG00000050535)	ccdc126 (ENSSGRG00000050534)	npy (ENSSGRG00000050533)	ENSSGRG00000050477	GSDME (ENSSGRG00000050472)	osbpl3a (ENSSGRG00000050470)	nfe2l3 (ENSSGRG00000050469)
Cyprininae	ANCESTRAL SPECIES	75						ENSGT00940000161408.b	ENSGT00950000183051.a.a.a.b	ENSGT00940000156500.f	ENSGT00390000010779.a.b.a.e	ENSGT00530000063631.a.k.a	ENSGT00510000047030.d.q.a	ENSGT00390000006540.e	ENSGT00940000154995.gb	ENSGT00940000154337.b.e.a	ENSGT00940000156869.j	ENSGT00390000008096.C.b.b ##22	ENSGT00940000157121.h	ENSGT00530000063480.b.o ##24	ENSGT00530000063609.b.x.r ##26	ENSGT00530000063609.b.x.q.b ##26	ENSGT00390000004280.b	ENSGT00950000183188.B.i	ENSGT00940000154957.B.b	ENSGT00940000157167.ab	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B.h	ENSGT00770000120611.B.g	ENSGT00940000156475.f.c	ENSGT00940000155348.A.i	ENSGT00940000155880.f.f	ENSGT00940000155957.b.c
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2649																satb1a (ENSCARG00000062427) ##22	tbc1d5 (ENSCARG00000062569)	dazl (ENSCARG00000064923) ##24
Goldfish	MODERN SPECIES	38	crabp2b (ENSCARG00000021900)	SLC30A8 (ENSCARG00000021920)	med30 (ENSCARG00000021936)	ext1b (ENSCARG00000021952)	ENSCARG00000022000	znf516 (ENSCARG00000022006)	tshz1 (ENSCARG00000022016)	cndp2 (ENSCARG00000022040)	txnl4a (ENSCARG00000022496)	adnp2b (ENSCARG00000022506)	nutf2l (ENSCARG00000022510)	ngly1 (ENSCARG00000022519)	kat2b (ENSCARG00000022552)	rab5aa (ENSCARG00000022987)	KCNH8 (ENSCARG00000022999)	satb1a (ENSCARG00000023032) ##22	tbc1d5 (ENSCARG00000023076)	dazl (ENSCARG00000024917) ##24	ENSCARG00000024956 ##26	oxnad1 (ENSCARG00000024962)	GPNMB (ENSCARG00000025004)	igf2bp3 (ENSCARG00000025298)	tra2a (ENSCARG00000030410)	ccdc126 (ENSCARG00000030423)	ENSCARG00000030433	npy (ENSCARG00000030446)	ENSCARG00000030534	ENSCARG00000032016	osbpl3a (ENSCARG00000032064)	ENSCARG00000032558	ENSCARG00000032573
Cyprininae_a	ANCESTRAL SPECIES	1	ENSGT00940000157616.j.a.a	ENSGT00940000157071.t	ENSGT00940000159356.a.b.b.a	ENSGT01050000244841.A.b.a.b.a.a.i.b	ENSGT00390000014772.k.f	ENSGT00940000161408.b	ENSGT00950000183051.a.a.a.b	ENSGT00940000156500.f	ENSGT00390000010779.a.b.a.e	ENSGT00530000063631.a.k.a	ENSGT00510000047030.d.q.a	ENSGT00390000006540.e	ENSGT00940000154995.gb	ENSGT00940000154337.b.e.a	ENSGT00940000156869.j	ENSGT00390000008096.C.b.b ##22	ENSGT00940000157121.h	ENSGT00530000063480.b.o ##24	ENSGT00530000063609.b.x.r ##26	ENSGT00530000063609.b.x.q.b ##26	ENSGT00390000004280.b	ENSGT00950000183188.B.i	ENSGT00940000154957.B.b	ENSGT00940000157167.ab	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B.h	ENSGT00770000120611.B.g	ENSGT00940000156475.f.c	ENSGT00940000155348.A.i	ENSGT00940000155880.f.f	ENSGT00940000155957.b.c
Golden-line barbel	MODERN SPECIES	173							PCDH1 (ENSSGRG00000047544)	tshz1 (ENSSGRG00000047545)	cndp2 (ENSSGRG00000047548)	ENSSGRG00000047633	adnp2b (ENSSGRG00000047638)	nutf2l (ENSSGRG00000047639)	ngly1 (ENSSGRG00000047655)	kat2b (ENSSGRG00000047666)	KCNH8 (ENSSGRG00000047985)	satb1a (ENSSGRG00000047993) ##22	tbc1d5 (ENSSGRG00000048006)	dazl (ENSSGRG00000048694) ##24	oxnad1 (ENSSGRG00000048695)	GPNMB (ENSSGRG00000048697)	igf2bp3 (ENSSGRG00000048700)	tra2a (ENSSGRG00000048846)	ccdc126 (ENSSGRG00000048847)	fam221a (ENSSGRG00000048849)	ENSSGRG00000048852	ENSSGRG00000049022
Common carp reference	MODERN SPECIES	31	ENSCCRG00000055835	GALR1 (ENSCCRG00000058396)	ENSCCRG00000076353	znf516 (ENSCCRG00000060631)	ENSCCRG00000067793	tshz1 (ENSCCRG00000078395)	ENSCCRG00000068758	cndp2 (ENSCCRG00000021131)	txnl4a (ENSCCRG00000020409)	adnp2b (ENSCCRG00000020419)	nutf2l (ENSCCRG00000020425)	ngly1 (ENSCCRG00000020431)	kat2b (ENSCCRG00000007857)	rab5aa (ENSCCRG00000054440)	KCNH8 (ENSCCRG00000041034)	satb1a (ENSCCRG00000041031) ##22	tbc1d5 (ENSCCRG00000032372)	dazl (ENSCCRG00000064421) ##24	ENSCCRG00000023882 ##26	ENSCCRG00000032267 ##26	oxnad1 (ENSCCRG00000032264)	GPNMB (ENSCCRG00000041852)	igf2bp3 (ENSCCRG00000054552)	tra2a (ENSCCRG00000030052)	ccdc126 (ENSCCRG00000073389)	fam221a (ENSCCRG00000057810)	npy (ENSCCRG00000013855)	ENSCCRG00000026632	ENSCCRG00000082773	osbpl3a (ENSCCRG00000037850)	npvf (ENSCCRG00000066501)
Zebrafish	MODERN SPECIES	10	atp9b (ENSDARG00000062521)	sall3b (ENSDARG00000057586)	GALR1 (ENSDARG00000005522)	ENSDARG00000111408	ENSDARG00000036186	znf516 (ENSDARG00000070809)	tshz1 (ENSDARG00000005026)	cndp2 (ENSDARG00000003931)	txnl4a (ENSDARG00000036190)	adnp2b (ENSDARG00000028431)	nutf2l (ENSDARG00000014499)	ngly1 (ENSDARG00000003205)	kat2b (ENSDARG00000062634)	rab5aa (ENSDARG00000018602)	KCNH8 (ENSDARG00000062640)	satb1a (ENSDARG00000057649) ##22	tbc1d5 (ENSDARG00000036212)	dazl (ENSDARG00000036214) ##24	RFTN1 (ENSDARG00000070831) ##26	oxnad1 (ENSDARG00000062664)	GPNMB (ENSDARG00000062688)	igf2bp3 (ENSDARG00000010266)	ENSDARG00000096834	tra2a (ENSDARG00000007863)	ccdc126 (ENSDARG00000062695)	fam221a (ENSDARG00000027599)	ENSDARG00000074359	npy (ENSDARG00000036222)	pals2b (ENSDARG00000029761)	ENSDARG00000086762	osbpl3a (ENSDARG00000033251)
Euteleosteomorpha	ANCESTRAL SPECIES	47	ENSGT01050000244890.a.a.a.g	ENSGT00980000200411	ENSGT00950000183094.b.b	ENSGT00940000170761	ENSGT00940000155689	ENSGT00940000159209	ENSGT00940000165648	ENSGT00940000160023	ENSGT00940000155620.q	ENSGT00940000158230.b.b	ENSGT00940000160242.b	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00940000154337.a.b	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f	ENSGT00940000155957.b
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00950000183094.b.b	ENSGT00940000170761	ENSGT00940000155689	ENSGT00940000159209	ENSGT00940000165648	ENSGT00940000160023	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f	ENSGT00940000155620.q	ENSGT00940000158230.b.b	ENSGT00940000160242.b	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00940000154337.a.b	ENSGT00940000154337.b	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT01100000263491.a.b.a.a.a.a.b.u.b	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f
Northern pike	MODERN SPECIES	9	grinaa (ENSELUG00000006921)	ENSELUG00000001493	RPRD1A (ENSELUG00000006888)	ENSELUG00000006829	nfyc (ENSELUG00000006791)	KCNQ4 (ENSELUG00000006759)	TINAGL1 (ENSELUG00000006679)	lim2.5 (ENSELUG00000006656)	UBQLN4 (ENSELUG00000006629)	rab25a (ENSELUG00000006604)	ZNF385D (ENSELUG00000006590)	ENSELUG00000006565 #14	kat2b (ENSELUG00000006508)	RAB5A (ENSELUG00000006462)	KCNH8 (ENSELUG00000006418)	satb1a (ENSELUG00000006344) ##22	tbc1d5 (ENSELUG00000006305)	ENSELUG00000006244	dazl (ENSELUG00000006175) ##24	ENSELUG00000006125 ##26	oxnad1 (ENSELUG00000029103)	ENSELUG00000006058	GALNT15 (ENSELUG00000006025)	GPNMB (ENSELUG00000005995)	igf2bp3 (ENSELUG00000005947)	ENSELUG00000032172	tra2a (ENSELUG00000005846)	ccdc126 (ENSELUG00000005811)	fam221a (ENSELUG00000005782)	ENSELUG00000031716	npy (ENSELUG00000005748)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000008096.C.b.c ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000008096.C.b.c ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000008096.C.b.c ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000008096.C.b.c ##22
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005046930	ENSOTSG00005046931	ENSOTSG00005046932	si:dkey-57a22.15 (ENSOTSG00005046933)	crygm6 (ENSOTSG00005046934)	pikfyve (ENSOTSG00005046954)	ANKRD44 (ENSOTSG00005047338)	SF3B1 (ENSOTSG00005047341) #30	coq10b (ENSOTSG00005047343) #29	hspd1 (ENSOTSG00005047345) ##28	hspe1 (ENSOTSG00005047349) #27	MOB4 (ENSOTSG00005047351)	rftn2 (ENSOTSG00005047352) #26	ENSOTSG00005047354	ENSOTSG00005047355	ENSOTSG00005047356 ##22	PLCL1 (ENSOTSG00005047357) #23	ENSOTSG00005047359	fzd5 (ENSOTSG00005047360)	ccnyl1 (ENSOTSG00005047361)	creb1b (ENSOTSG00005047367)	ENSOTSG00005047371	zgc:162780 (ENSOTSG00005047373)	ube2f (ENSOTSG00005047377)	ramp1 (ENSOTSG00005015728)	epb41l5 (ENSOTSG00005015993)	ptpn4a (ENSOTSG00005016024)	tmem177 (ENSOTSG00005016029)	MRAS (ENSOTSG00005016034)	pth2ra (ENSOTSG00005016041)	tmem163a (ENSOTSG00005016062)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	136	ENSGT00940000159758.h.a	ENSGT01050000244890.a.a.a.g.c	ENSGT00980000200411	ENSGT00950000183094.b.b.c	ENSGT00940000155689.o	ENSGT00940000159209.d	ENSGT00940000165648	ENSGT00940000160023.h	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.a	ENSGT00940000155620.q.b	ENSGT00940000158230.b.b.d	ENSGT00940000160242.b.a	ENSGT00940000154995.db	ENSGT00940000154337.a.b.b	ENSGT00940000156869.e.b	ENSGT00390000008096.C.b.d.a ##22	ENSGT00940000157121.l	ENSGT00940000155660.a.a.a	ENSGT00530000063480.b.r ##24	ENSGT00530000063609.b.x.c.b ##26	ENSGT00390000004280.h.a	ENSGT00950000183188.B.p	ENSGT00940000154957.B.h	ENSGT00940000157167.eb	ENSGT00940000153470.a.a.a.b.a	ENSGT00940000156475.f.a	ENSGT00940000155348.A.e	ENSGT00940000155880.f.b	ENSGT00940000155957.b.a	ENSGT00940000161975.b	ENSGT00940000156420.a.b.c.a
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00390000007486.c	ENSGT00940000159758.h.a	ENSGT01050000244890.a.a.a.g.c	ENSGT00980000200411	ENSGT00950000183094.b.b.c	ENSGT00940000155689.o	ENSGT00940000159209.d	ENSGT00940000160023.h	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.a	ENSGT00940000155620.q.b	ENSGT00940000158230.b.b.d	ENSGT00940000160242.b.a	ENSGT00940000154995.db	ENSGT00940000154337.a.b.b	ENSGT00940000156869.e.b	ENSGT00390000008096.C.b.d.a ##22	ENSGT00940000157121.l	ENSGT00940000155660.a.a.a	ENSGT00530000063480.b.r ##24	ENSGT00530000063609.b.x.c.b ##26	ENSGT00390000004280.h.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.b	ENSGT00950000183188.B.p	ENSGT00940000154957.B.h	ENSGT00940000157167.eb	ENSGT00940000153470.a.a.a.b.a	ENSGT00940000156475.f.a	ENSGT00940000155348.A.e	ENSGT00940000155880.f.b	ENSGT00940000155957.b.a	ENSGT00940000161975.b
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00390000007486.c	ENSGT00940000159758.h.a	ENSGT01050000244890.a.a.a.g.c	ENSGT00980000200411	ENSGT00950000183094.b.b.c	ENSGT00940000155689.o	ENSGT00940000159209.d	ENSGT00940000160023.h	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.a	ENSGT00940000155620.q.b	ENSGT00940000158230.b.b.d	ENSGT00940000160242.b.a	ENSGT00940000154995.db	ENSGT00940000154337.a.b.b	ENSGT00940000156869.e.b	ENSGT00390000008096.C.b.d.a ##22	ENSGT00940000157121.l	ENSGT00940000155660.a.a.a	ENSGT00530000063480.b.r ##24	ENSGT00530000063609.b.x.c.b ##26	ENSGT00390000004280.h.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.b	ENSGT00950000183188.B.p	ENSGT00940000154957.B.h	ENSGT00940000157167.eb	ENSGT00940000153470.a.a.a.b.a	ENSGT00940000156475.f.a	ENSGT00940000155348.A.e	ENSGT00940000155880.f.b	ENSGT00940000155957.b.a	ENSGT00940000161975.b
Rainbow trout	MODERN SPECIES	24	mapk15 (ENSOMYG00000011369)	grinaa (ENSOMYG00000011338)	ENSOMYG00000011312	ENSOMYG00000060583	ENSOMYG00000064546	ENSOMYG00000048335	ENSOMYG00000010733	ENSOMYG00000075414	ENSOMYG00000010619	ENSOMYG00000010583	ENSOMYG00000010556	ZNF385D (ENSOMYG00000062776)	kat2b (ENSOMYG00000008707)	RAB5A (ENSOMYG00000007766)	KCNH8 (ENSOMYG00000011479)	satb1a (ENSOMYG00000011451) ##22	tbc1d5 (ENSOMYG00000009058)	ENSOMYG00000073762	ENSOMYG00000050278	dazl (ENSOMYG00000007820) ##24	ENSOMYG00000069497	ENSOMYG00000051561 ##26	ENSOMYG00000007692 ##26	oxnad1 (ENSOMYG00000007661)	ENSOMYG00000007638	GPNMB (ENSOMYG00000007629)	igf2bp3 (ENSOMYG00000007245)	ENSOMYG00000064440	tra2a (ENSOMYG00000006730)	ENSOMYG00000006622	npy (ENSOMYG00000006572)
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000007486.c	ENSGT00940000159758.h.a	ENSGT01050000244890.a.a.a.g.c	ENSGT00980000200411	ENSGT00950000183094.b.b.c	ENSGT00940000155689.o	ENSGT00940000159209.d	ENSGT00940000160023.h	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.a	ENSGT00940000155620.q.b	ENSGT00940000158230.b.b.d	ENSGT00940000160242.b.a	ENSGT00940000154995.db	ENSGT00940000154337.a.b.b	ENSGT00940000156869.e.b	ENSGT00390000008096.C.b.d.a ##22	ENSGT00940000157121.l	ENSGT00940000155660.a.a.a	ENSGT00530000063480.b.r ##24	ENSGT00530000063609.b.x.c.b ##26	ENSGT00390000004280.h.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.b	ENSGT00950000183188.B.p	ENSGT00940000154957.B.h	ENSGT00940000157167.eb	ENSGT00940000153470.a.a.a.b.a	ENSGT00990000210143	ENSGT00940000156475.f.a	ENSGT00940000155348.A.e	ENSGT00940000155880.f.b	ENSGT00940000155957.b.a
Coho salmon	MODERN SPECIES	5	vps28 (ENSOKIG00005022228)	mapk15 (ENSOKIG00005022236)	grinaa (ENSOKIG00005022250)	ENSOKIG00005022278	RPRD1A (ENSOKIG00005022285)	nfyc (ENSOKIG00005022336)	KCNQ4 (ENSOKIG00005004317)	TINAGL1 (ENSOKIG00005004449)	LIM2 (ENSOKIG00005004500)	ENSOKIG00005004546	RAB25 (ENSOKIG00005004604)	ZNF385D (ENSOKIG00005004621)	kat2b (ENSOKIG00005004681)	RAB5A (ENSOKIG00005004989)	KCNH8 (ENSOKIG00005005011)	satb1a (ENSOKIG00005005220) ##22	tbc1d5 (ENSOKIG00005005258)	ENSOKIG00005005414	dazl (ENSOKIG00005005469) ##24	ENSOKIG00005005493 ##26	ENSOKIG00005005510	oxnad1 (ENSOKIG00005005528)	ENSOKIG00005005602	ENSOKIG00005005608	GPNMB (ENSOKIG00005005613)	igf2bp3 (ENSOKIG00005005671)	tra2a (ENSOKIG00005006466)	ccdc126 (ENSOKIG00005006477)	ENSOKIG00005006496	npy (ENSOKIG00005006512)	ENSOKIG00005006623
Salmo	ANCESTRAL SPECIES	2	ENSGT00390000007486.c	ENSGT00940000159758.h.a	ENSGT01050000244890.a.a.a.g.c	ENSGT00980000200411	ENSGT00950000183094.b.b.c	ENSGT00940000155689.o	ENSGT00940000159209.d	ENSGT00940000160023.h	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.a	ENSGT00940000155620.q.b	ENSGT00940000158230.b.b.d	ENSGT00940000160242.b.a	ENSGT00940000154995.db	ENSGT00940000154337.a.b.b	ENSGT00940000156869.e.b	ENSGT00390000008096.C.b.d.a ##22	ENSGT00940000157121.l	ENSGT00940000155660.a.a.a	ENSGT00530000063480.b.r ##24	ENSGT00530000063609.b.x.c.b ##26	ENSGT00390000004280.h.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.b	ENSGT00950000183188.B.p	ENSGT00940000154957.B.h	ENSGT00940000157167.eb	ENSGT00940000153470.a.a.a.b.a	ENSGT00940000156475.f.a	ENSGT00940000158500.r	ENSGT00940000155348.A.e	ENSGT00940000155880.f.b	ENSGT00940000155957.b.a
Atlantic salmon	MODERN SPECIES	5	nfyc (ENSSSAG00000058435)	ENSSSAG00000058562	ENSSSAG00000058648	ENSSSAG00000098149	UBQL4 (ENSSSAG00000058719)	ENSSSAG00000099987	ENSSSAG00000058816	ENSSSAG00000103521	ENSSSAG00000058826	ENSSSAG00000058839	ENSSSAG00000113896	ENSSSAG00000087966	kat2b (ENSSSAG00000111735)	ENSSSAG00000024200	ENSSSAG00000064758	satb1a (ENSSSAG00000046228) ##22	tbc1d5 (ENSSSAG00000042278)	ENSSSAG00000041431	dazl (ENSSSAG00000091289) ##24	ENSSSAG00000041364 ##26	ENSSSAG00000041372	oxnad1 (ENSSSAG00000102742)	ENSSSAG00000104441	ENSSSAG00000015900	ENSSSAG00000041346	gpnmb (ENSSSAG00000041327)	igf2bp3 (ENSSSAG00000040628)	tra2a (ENSSSAG00000040587)	ccdc126 (ENSSSAG00000104586)	npy (ENSSSAG00000040508)	ENSSSAG00000009104
River trout	MODERN SPECIES	29	vps28 (ENSSTUG00000040131)	mapk15 (ENSSTUG00000040114)	grinaa (ENSSTUG00000040092)	ENSSTUG00000040085	RPRD1A (ENSSTUG00000040062)	nfyc (ENSSTUG00000039513)	KCNQ4 (ENSSTUG00000039438)	TINAGL1 (ENSSTUG00000039412)	lim2.5 (ENSSTUG00000039396)	ENSSTUG00000039222	ENSSTUG00000039177	ZNF385D (ENSSTUG00000039168)	kat2b (ENSSTUG00000037743)	RAB5A (ENSSTUG00000037684)	ENSSTUG00000037654	ENSSTUG00000037645 ##22	ENSSTUG00000046943	dazl (ENSSTUG00000046935) ##24	ENSSTUG00000046928	ENSSTUG00000046914 ##26	oxnad1 (ENSSTUG00000046911)	ENSSTUG00000046901	ENSSTUG00000046899	GPNMB (ENSSTUG00000046895)	igf2bp3 (ENSSTUG00000046853)	tra2a (ENSSTUG00000046838)	ccdc126 (ENSSTUG00000046833)	npy (ENSSTUG00000046812)	pals2b (ENSSTUG00000046798)	ENSSTUG00000046790	GSDME (ENSSTUG00000046784)
Huchen	MODERN SPECIES	722			ENSHHUG00000005648	KCNQ4 (ENSHHUG00000005672)	ENSHHUG00000005691	TINAGL1 (ENSHHUG00000005693)	lim2.5 (ENSHHUG00000005748)	ENSHHUG00000005752	ENSHHUG00000005831	rab25a (ENSHHUG00000005835)	ENSHHUG00000005846	ENSHHUG00000005857 #14	kat2b (ENSHHUG00000005870)	RAB5A (ENSHHUG00000005906)	KCNH8 (ENSHHUG00000005969)	satb1a (ENSHHUG00000005987) ##22	tbc1d5 (ENSHHUG00000006169)	ENSHHUG00000006576	ENSHHUG00000006587	dazl (ENSHHUG00000006799) ##24	ENSHHUG00000006814
Salmoninae	ANCESTRAL SPECIES	48	ENSGT00940000159758.h.b	ENSGT01050000244890.a.a.a.g.d	ENSGT00950000183094.b.b.d	ENSGT00940000170761	ENSGT00940000155689.p	ENSGT00940000159209.c	ENSGT00940000160023.g	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000155620.q.a	ENSGT00940000158230.b.b.c	ENSGT00940000160242.b.b	ENSGT00940000154107.b #14	ENSGT00940000154995.eb	ENSGT00940000154337.a.b.a	ENSGT00940000156869.e.a	ENSGT00390000008096.C.b.d.b ##22	ENSGT00940000157121.k	ENSGT00940000155660.a.a.b	ENSGT01050000244843.d.e.b	ENSGT00940000163711.b.c.b	ENSGT00530000063480.b.q ##24	ENSGT00530000063609.b.x.c.a ##26	ENSGT00390000004280.h.b	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.b	ENSGT00940000160808	ENSGT00950000183188.B.o	ENSGT00940000154957.B.g	ENSGT00940000157167.db	ENSGT00940000153470.a.a.a.b.b	ENSGT00770000120611.B	ENSGT00940000156475.f.b
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00940000159758.h.b	ENSGT01050000244890.a.a.a.g.d	ENSGT00950000183094.b.b.d	ENSGT00940000170761	ENSGT00940000155689.p	ENSGT00940000159209.c	ENSGT00940000160023.g	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000155620.q.a	ENSGT00940000158230.b.b.c	ENSGT00940000160242.b.b	ENSGT00940000154107.b #14	ENSGT00940000154995.eb	ENSGT00940000154337.a.b.a	ENSGT00940000156869.e.a	ENSGT00390000008096.C.b.d.b ##22	ENSGT00940000157121.k	ENSGT00940000155660.a.b	ENSGT01070000254813	ENSGT00940000155660.a.a.b	ENSGT01050000244843.d.e.b	ENSGT00940000163711.b.c.b	ENSGT00530000063480.b.q ##24	ENSGT00530000063609.b.x.c.a ##26	ENSGT00390000004280.h.b	ENSGT00940000160808	ENSGT00950000183188.B.o	ENSGT00940000154957.B.g	ENSGT00940000157167.db	ENSGT00940000153470.a.a.a.b.b	ENSGT00770000120611.B
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00940000159758.h.b	ENSGT01050000244890.a.a.a.g.d	ENSGT00950000183094.b.b.d	ENSGT00940000170761	ENSGT00940000155689.p	ENSGT00940000159209.c	ENSGT00940000160023.g	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000155620.q.a	ENSGT00940000158230.b.b.c	ENSGT00940000160242.b.b	ENSGT00940000154107.b #14	ENSGT00940000154995.eb	ENSGT00940000154337.a.b.a	ENSGT00940000156869.f	ENSGT00390000008096.C.b.d.b ##22	ENSGT00940000157121.k	ENSGT00940000155660.a.b	ENSGT01070000254813	ENSGT00940000155660.a.a.b	ENSGT01050000244843.d.e.b	ENSGT00940000163711.b.c.b	ENSGT00530000063480.b.q ##24	ENSGT00530000063609.b.x.c.a ##26	ENSGT00390000004280.h.b	ENSGT00940000160808	ENSGT00950000183188.B.o	ENSGT00940000154957.B.g	ENSGT00940000157167.db	ENSGT00940000153470.a.a.a.b.b	ENSGT00770000120611.B
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00940000159758.h.b	ENSGT01050000244890.a.a.a.g.d	ENSGT00950000183094.b.b.d	ENSGT00940000170761	ENSGT00940000155689.p	ENSGT00940000159209.c	ENSGT00940000160023.g	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000155620.q.a	ENSGT00940000158230.b.b.c	ENSGT00940000160242.b.b.a	ENSGT00940000154107.b #14	ENSGT00940000154995.eb	ENSGT00940000154337.a.b.a	ENSGT00940000156869.f	ENSGT00390000008096.C.b.d.b ##22	ENSGT00940000157121.k	ENSGT00940000155660.a.a.b	ENSGT01050000244843.d.e.b	ENSGT00940000163711.b.c.b	ENSGT00530000063480.b.q ##24	ENSGT00530000063609.b.x.c.a ##26	ENSGT00390000004280.h.b	ENSGT00940000160808	ENSGT00950000183188.B.o	ENSGT00940000154957.B.g	ENSGT00940000157167.db	ENSGT00940000153470.a.a.a.b.b	ENSGT00770000120611.B	ENSGT00940000156475.f.b	ENSGT00940000155348.A.f
Coho salmon	MODERN SPECIES	8	mapk15 (ENSOKIG00005038500)	grinaa (ENSOKIG00005038594)	ENSOKIG00005038622	ENSOKIG00005038633	ENSOKIG00005038650	KCNQ4 (ENSOKIG00005038726)	TINAGL1 (ENSOKIG00005039028)	LIM2 (ENSOKIG00005039195)	ENSOKIG00005039251	rab25a (ENSOKIG00005039359)	ENSOKIG00005039394	ENSOKIG00005039403 #14	kat2b (ENSOKIG00005039493)	RAB5A (ENSOKIG00005040055)	ENSOKIG00005040112	satb1a (ENSOKIG00005040510) ##22	tbc1d5 (ENSOKIG00005040670)	ENSOKIG00005043665	ENSOKIG00005043740	ENSOKIG00005043747	dazl (ENSOKIG00005043763) ##24	ENSOKIG00005043784 ##26	ENSOKIG00005043793	ENSOKIG00005043803	oxnad1 (ENSOKIG00005043810)	GALNT15 (ENSOKIG00005043842)	ENSOKIG00005043853	GPNMB (ENSOKIG00005043861)	ENSOKIG00005043877	igf2bp3 (ENSOKIG00005043935)	tra2a (ENSOKIG00005044533)
Chinook salmon	MODERN SPECIES	4	grinaa (ENSOTSG00005006069)	ENSOTSG00005006070	ENSOTSG00005006071	nfyc (ENSOTSG00005006077)	KCNQ4 (ENSOTSG00005006141)	TINAGL1 (ENSOTSG00005006145)	lim2.5 (ENSOTSG00005006155)	ENSOTSG00005006156	rab25a (ENSOTSG00005006201)	ENSOTSG00005006202	ENSOTSG00005006203	ENSOTSG00005006204 #14	kat2b (ENSOTSG00005006214)	RAB5A (ENSOTSG00005009191)	ENSOTSG00005009192	ENSOTSG00005009193 ##22	tbc1d5 (ENSOTSG00005009194)	ENSOTSG00005009926	ENSOTSG00005009927	ENSOTSG00005009929	dazl (ENSOTSG00005009930) ##24	ENSOTSG00005009932 ##26	oxnad1 (ENSOTSG00005009933)	GALNT15 (ENSOTSG00005009935)	GPNMB (ENSOTSG00005009936)	igf2bp3 (ENSOTSG00005009941)	tra2a (ENSOTSG00005010612)	ccdc126 (ENSOTSG00005010613)	fam221a (ENSOTSG00005010614)	npy (ENSOTSG00005010616)	ENSOTSG00005001614
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000015419	ENSOMYG00000015348	ENSOMYG00000026008	ENSOMYG00000015328	ENSOMYG00000015315	ENSOMYG00000015306	ENSOMYG00000015206	ENSOMYG00000015161	ENSOMYG00000075706	ENSOMYG00000077447	ENSOMYG00000015152	ENSOMYG00000015144 #14	kat2b (ENSOMYG00000014314)	RAB5A (ENSOMYG00000014195)	KCNH8 (ENSOMYG00000014041)	satb1a (ENSOMYG00000013702) ##22	tbc1d5 (ENSOMYG00000013579)	ENSOMYG00000058228	ENSOMYG00000013394	ENSOMYG00000073485	ENSOMYG00000013302	ENSOMYG00000013288	dazl (ENSOMYG00000013266) ##24	ENSOMYG00000013236	ENSOMYG00000013222 ##26	oxnad1 (ENSOMYG00000013204)	GALNT15 (ENSOMYG00000013197)	GPNMB (ENSOMYG00000013187)	igf2bp3 (ENSOMYG00000013089)	tra2a (ENSOMYG00000013042)	ccdc126 (ENSOMYG00000013038)
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000159758.h.b	ENSGT01050000244890.a.a.a.g.d	ENSGT00950000183094.b.b.d	ENSGT00940000170761	ENSGT00940000155689.p	ENSGT00940000159209.c	ENSGT00940000160023.g	ENSGT01050000244814.a.a.b.b.b.a.a.d.a.f.b	ENSGT00940000155620.q.a	ENSGT00940000158230.b.b.c	ENSGT00940000160242.b.b	ENSGT00940000154107.b #14	ENSGT00940000154995.eb	ENSGT00940000154337.a.b.a	ENSGT00940000156869.e.a	ENSGT00390000008096.C.b.d.b ##22	ENSGT00940000157121.k	ENSGT01070000254813	ENSGT00940000155660.a.a.b	ENSGT01050000244843.d.e.b	ENSGT00940000163711.b.c.b	ENSGT00530000063480.b.q ##24	ENSGT00530000063609.b.x.c.a ##26	ENSGT00390000004280.h.b	ENSGT00940000160808	ENSGT00950000183188.B.o	ENSGT00940000154957.B.g	ENSGT00940000157167.db	ENSGT00940000153470.a.a.a.b.b	ENSGT00770000120611.B	ENSGT00940000156475.f.b
River trout	MODERN SPECIES	27	grinaa (ENSSTUG00000021857)	RPRD1A (ENSSTUG00000021844)	ENSSTUG00000021818	nfyc (ENSSTUG00000021729)	ENSSTUG00000021719	KCNQ4 (ENSSTUG00000021587)	ENSSTUG00000021571	TINAGL1 (ENSSTUG00000021559)	lim2.5 (ENSSTUG00000021536)	ENSSTUG00000021476	rab25a (ENSSTUG00000021456)	ENSSTUG00000021448	ENSSTUG00000021441 #14	kat2b (ENSSTUG00000021073)	RAB5A (ENSSTUG00000021044)	satb1a (ENSSTUG00000021041) ##22	tbc1d5 (ENSSTUG00000020110)	ENSSTUG00000020040	ENSSTUG00000019945	ENSSTUG00000019930	ENSSTUG00000019925	dazl (ENSSTUG00000019898) ##24	ENSSTUG00000019879 ##26	oxnad1 (ENSSTUG00000019867)	GALNT15 (ENSSTUG00000019842)	GPNMB (ENSSTUG00000019830)	igf2bp3 (ENSSTUG00000019758)	tra2a (ENSSTUG00000019736)	ccdc126 (ENSSTUG00000019727)	fam221a (ENSSTUG00000019703)	npy (ENSSTUG00000019686)
Atlantic salmon	MODERN SPECIES	19	cap2 (ENSSSAG00000047393)	ENSSSAG00000095343	grinaa (ENSSSAG00000047153)	ENSSSAG00000047124	ENSSSAG00000046875	ENSSSAG00000046856	ENSSSAG00000046830	ENSSSAG00000068152	ubql4 (ENSSSAG00000046723)	ENSSSAG00000046697	ENSSSAG00000046690	ENSSSAG00000046678 #14	kat2b (ENSSSAG00000046492)	RAB5A (ENSSSAG00000110045)	ENSSSAG00000045793	satb1a (ENSSSAG00000114957) ##22	ENSSSAG00000088469	tbc1d5 (ENSSSAG00000040193)	ENSSSAG00000040073	ENSSSAG00000096809	ENSSSAG00000088140	dazl (ENSSSAG00000116219) ##24	ENSSSAG00000039761 ##26	ENSSSAG00000118045	oxnad1 (ENSSSAG00000039654)	ENSSSAG00000039484	GALNT15 (ENSSSAG00000039629)	igf2bp3 (ENSSSAG00000016115)	tra2a (ENSSSAG00000015847)	ENSSSAG00000108185	ccdc126 (ENSSSAG00000015834)
Huchen	MODERN SPECIES	1881																satb1a (ENSHHUG00000020877) ##22	tbc1d5 (ENSHHUG00000020544)	ENSHHUG00000020529	ENSHHUG00000020524	ENSHHUG00000020520	dazl (ENSHHUG00000020510) ##24
Acanthomorphata	ANCESTRAL SPECIES	49	ENSGT00940000159894	ENSGT00940000158988.a.a	ENSGT00940000159522	ENSGT00940000155029.c.a.f	ENSGT00940000157315	ENSGT00940000156007.k	ENSGT00940000153305	ENSGT00950000182892.a.b.b	ENSGT00390000003271	ENSGT01030000234992	ENSGT00940000157248.c.b	ENSGT00940000157858.j	ENSGT00940000160267	ENSGT00760000119737	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155239	ENSGT00940000159188
Cod	MODERN SPECIES	14	ENSGMOG00000036842	hoxa5a (ENSGMOG00000013854)	HOXA4 (ENSGMOG00000029383)	hoxa3a (ENSGMOG00000022984)	ENSGMOG00000013834	HOXA1 (ENSGMOG00000030787)	snx10a (ENSGMOG00000013310)	CBX3 (ENSGMOG00000013305)	nfe2l3 (ENSGMOG00000013292)	ENSGMOG00000022248	ENSGMOG00000013273	ENSGMOG00000013265	ENSGMOG00000026246	ENSGMOG00000013231	KCNH8 (ENSGMOG00000006973)	satb1a (ENSGMOG00000011439) ##22	tbc1d5 (ENSGMOG00000011459)	ENSGMOG00000011478	dazl (ENSGMOG00000011491) ##24	RFTN1 (ENSGMOG00000011560) ##26	oxnad1 (ENSGMOG00000011578)	GALNT15 (ENSGMOG00000029953)	GPNMB (ENSGMOG00000013797)	igf2bp3 (ENSGMOG00000013764)	tra2a (ENSGMOG00000013740)	ccdc126 (ENSGMOG00000032506)	fam221a (ENSGMOG00000013716)	NPY (ENSGMOG00000013705)	ENSGMOG00000013684	ago2 (ENSGMOG00000013651)	dlx5a (ENSGMOG00000013639)
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000158988.a.a	ENSGT00940000159522	ENSGT00940000155029.c.a.f	ENSGT00940000157315	ENSGT00940000156007.k	ENSGT00940000153305	ENSGT00950000182892.a.b.b	ENSGT00390000003271	ENSGT01030000234992	ENSGT00940000157248.c.b	ENSGT00940000157858.j	ENSGT00940000160267	ENSGT00760000119737	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155239
Pinecone sodierfish	MODERN SPECIES	2	HOXA4 (ENSMMDG00005023105)	hoxa3a (ENSMMDG00005023103)	ENSMMDG00005023102	hoxa1a (ENSMMDG00005023101)	snx10a (ENSMMDG00005023096)	cbx3a (ENSMMDG00005023091)	nfe2l3 (ENSMMDG00005023087)	ENSMMDG00005023084	ENSMMDG00005023083	ENSMMDG00005023076	FKBP14 (ENSMMDG00005023075)	ENSMMDG00005023073	ENSMMDG00005023071	ENSMMDG00005023069	ENSMMDG00005023066	satb1a (ENSMMDG00005023062) ##22	tbc1d5 (ENSMMDG00005022004)	ENSMMDG00005021849	ENSMMDG00005021839	ENSMMDG00005021835	ENSMMDG00005021832	dazl (ENSMMDG00005021827) ##24	ENSMMDG00005021823 ##26	ENSMMDG00005021821 ##26	oxnad1 (ENSMMDG00005021818)	GALNT15 (ENSMMDG00005021813)	GPNMB (ENSMMDG00005021807)	igf2bp3 (ENSMMDG00005021694)	tra2a (ENSMMDG00005021678)	ccdc126 (ENSMMDG00005021677)	fam221a (ENSMMDG00005021674)
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k
Tiger tail seahorse	MODERN SPECIES	162	DYNC1I1 (ENSHCOG00000006120)	sem1 (ENSHCOG00000006133)	dlx6a (ENSHCOG00000006148)	dlx5a (ENSHCOG00000006157)	ago2 (ENSHCOG00000006200)	ENSHCOG00000006235	npy (ENSHCOG00000006251)	fam221a (ENSHCOG00000006289)	ccdc126 (ENSHCOG00000006296)	tra2a (ENSHCOG00000006314)	tra2a (ENSHCOG00000006320)	igf2bp3 (ENSHCOG00000000578)	GPNMB (ENSHCOG00000006385)	ENSHCOG00000006413	ENSHCOG00000006559	ENSHCOG00000006588 ##22	tbc1d5 (ENSHCOG00000006746)	riok3 (ENSHCOG00000006794)	ENSHCOG00000006812	ASPH (ENSHCOG00000006836)	ENSHCOG00000006857	ENSHCOG00000006868	ENSHCOG00000006904
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00940000157883.a.b.f.pb.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00940000158874	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000156869	ENSGT00940000180587	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k
Turquoise killifish	MODERN SPECIES	1618	asb4 (ENSNFUG00015023805)	PDK4 (ENSNFUG00015023792)	DYNC1I1 (ENSNFUG00015022254)	sem1 (ENSNFUG00015022189)	dlx6a (ENSNFUG00015022183)	DLX5A (ENSNFUG00015022181)	ago2 (ENSNFUG00015019946)	ENSNFUG00015019777	NPY (ENSNFUG00015019759)	fam221a (ENSNFUG00015019741)	CCDC126 (ENSNFUG00015019734)	igf2bp3 (ENSNFUG00015018551)	GPNMB (ENSNFUG00015018516)	ENSNFUG00015018514	KCNH8 (ENSNFUG00015018264)	ENSNFUG00015018258 ##22	TBC1D5 (ENSNFUG00015016231)	ENSNFUG00015016103	GATAD2B (ENSNFUG00015016090)	ENSNFUG00015016071	C19H6ORF52 (ENSNFUG00015016058)	SACM1L (ENSNFUG00015016026)	SI (ENSNFUG00015016016)	PPP1R11 (ENSNFUG00015016006)	mgat1b (ENSNFUG00015015391)	ENSNFUG00015015386	ENSNFUG00015015371	ENSNFUG00015015361	TNFA (ENSNFUG00015015354)	ATAT1 (ENSNFUG00015015347)	ENSNFUG00015015317
Mangrove rivulus	MODERN SPECIES	2	PPP1R9A (ENSKMAG00000000136)	pdk4 (ENSKMAG00000020123)	DYNC1I1 (ENSKMAG00000020066)	sem1 (ENSKMAG00000020050)	dlx6a (ENSKMAG00000020044)	dlx5a (ENSKMAG00000020028)	ago2 (ENSKMAG00000019999)	ENSKMAG00000019961	npy (ENSKMAG00000019938)	fam221a (ENSKMAG00000019913)	ccdc126 (ENSKMAG00000019896)	igf2bp3 (ENSKMAG00000019838)	ENSKMAG00000019800	ENSKMAG00000019769	ENSKMAG00000019757	ENSKMAG00000019741 ##22	tbc1d5 (ENSKMAG00000019660)	ENSKMAG00000019608	DNAH3 (ENSKMAG00000019500)	dazl (ENSKMAG00000019443) ##24	ENSKMAG00000019415 ##26	ENSKMAG00000019406 ##26	oxnad1 (ENSKMAG00000019375)	ENSKMAG00000019364	ENSKMAG00000019351	FKBP14 (ENSKMAG00000019327)	COLQ (ENSKMAG00000019299)	ENSKMAG00000019288	ENSKMAG00000019264	nfe2l3 (ENSKMAG00000019254)	cbx3a (ENSKMAG00000019244)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000166841	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000162818.c.b.e.a.a	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00940000157883.a.b.f.pb.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00940000158874	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b.h	ENSGT00940000162732	ENSGT00940000166841	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000162818.c.b.e.a.a	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00940000157883.a.b.f.pb.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b
Poecilia	ANCESTRAL SPECIES	24	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.a.a	ENSGT00940000156032.`b.b.b.h	ENSGT00940000162732	ENSGT00940000166841	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000162818.c.b.e.a.a	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00940000157883.a.b.f.pb.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b
NAME_6	ANCESTRAL SPECIES	131															ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a.c	ENSGT00940000155660.a.d	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000162818.c.b.e.a.a	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00940000157883.a.b.f.pb.b	ENSGT00390000003271
Amazon molly	MODERN SPECIES	389		ENSPFOG00000006311	ENSPFOG00000022339	igf2bp3 (ENSPFOG00000005971)	ccdc126 (ENSPFOG00000005963)	fam221a (ENSPFOG00000005943)	npy (ENSPFOG00000021751)	ENSPFOG00000005576	ago2 (ENSPFOG00000005321)	dlx5a (ENSPFOG00000005189)	ENSPFOG00000005103	ENSPFOG00000005030	sem1 (ENSPFOG00000005003)	DYNC1I1 (ENSPFOG00000004865)	ENSPFOG00000004661	satb1a (ENSPFOG00000004509) ##22	tbc1d5 (ENSPFOG00000004071)	ENSPFOG00000003495	ENSPFOG00000003548	DNAH3 (ENSPFOG00000003449)	dazl (ENSPFOG00000003357) ##24	ENSPFOG00000003182 ##26	oxnad1 (ENSPFOG00000003073)	ENSPFOG00000020429	ENSPFOG00000002982	FKBP14 (ENSPFOG00000003022)	ENSPFOG00000002970	ENSPFOG00000002807	ENSPFOG00000002764	ENSPFOG00000002759	ENSPFOG00000002750
Sailfin molly	MODERN SPECIES	3888																ENSPLAG00000008437 ##22
Guppy	MODERN SPECIES	441	PPP1R9A (ENSPREG00000002304)	asb4 (ENSPREG00000002290)	DYNC1I1 (ENSPREG00000002205)	sem1 (ENSPREG00000002160)	ENSPREG00000002148	dlx6a (ENSPREG00000002135)	dlx5a (ENSPREG00000002123)	ago2 (ENSPREG00000002072)	ENSPREG00000001998	npy (ENSPREG00000001965)	fam221a (ENSPREG00000001870)	ccdc126 (ENSPREG00000001841)	igf2bp3 (ENSPREG00000001808)	ENSPREG00000001773	KCNH8 (ENSPREG00000001739)	ENSPREG00000001706 ##22	ENSPREG00000001606	tbc1d5 (ENSPREG00000001475)	ENSPREG00000001422	ENSPREG00000001409	ENSPREG00000001385	ENSPREG00000001361	ENSPREG00000001338	ENSPREG00000001240	dazl (ENSPREG00000001227) ##24	ENSPREG00000001215 ##26	oxnad1 (ENSPREG00000001189)	ENSPREG00000001172	FKBP14 (ENSPREG00000001161)	ENSPREG00000001089	ENSPREG00000001059
Platyfish	MODERN SPECIES	4	asb4 (ENSXMAG00000000714)	pdk4 (ENSXMAG00000000718)	DYNC1I1 (ENSXMAG00000000722)	sem1 (ENSXMAG00000000752)	ENSXMAG00000000753	dlx6a (ENSXMAG00000029724)	dlx5a (ENSXMAG00000023346)	ago2 (ENSXMAG00000000787)	ENSXMAG00000000822	npy (ENSXMAG00000000838)	fam221a (ENSXMAG00000000839)	ccdc126 (ENSXMAG00000000841)	igf2bp3 (ENSXMAG00000027959)	ENSXMAG00000000862	ENSXMAG00000000864	satb1a (ENSXMAG00000000865) ##22	tbc1d5 (ENSXMAG00000000878)	ENSXMAG00000000895	ENSXMAG00000023317	ENSXMAG00000021242	ENSXMAG00000027874	ENSXMAG00000027381	ENSXMAG00000021982	dazl (ENSXMAG00000000965) ##24	ENSXMAG00000022206 ##26	oxnad1 (ENSXMAG00000000980)	ENSXMAG00000020143	ENSXMAG00000000986	FKBP14 (ENSXMAG00000026229)	ENSXMAG00000020144	ENSXMAG00000025378
NAME_4	ANCESTRAL SPECIES	107					ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000162818.c.b.e.a.a	ENSGT00940000157248.c.b	ENSGT00940000157883.a.b.f.pb.a	ENSGT00940000157883.a.b.f.pb.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b
Mummichog	MODERN SPECIES	2329						dlx6a (ENSFHEG00000016125)	dlx5a (ENSFHEG00000016102)	ago2 (ENSFHEG00000016080)	ENSFHEG00000016006	npy (ENSFHEG00000015976)	fam221a (ENSFHEG00000015957)	ccdc126 (ENSFHEG00000000397)	igf2bp3 (ENSFHEG00000015920)	ENSFHEG00000015851	ENSFHEG00000015773	ENSFHEG00000014586 ##22	tbc1d5 (ENSFHEG00000014560)	ENSFHEG00000014358	DNAH3 (ENSFHEG00000014337)	dazl (ENSFHEG00000000634) ##24	ENSFHEG00000014208 ##26	oxnad1 (ENSFHEG00000014203)	ENSFHEG00000014192	ENSFHEG00000014181	FKBP14 (ENSFHEG00000014170)	COLQ (ENSFHEG00000014155)	ENSFHEG00000014131	ENSFHEG00000014122	NPVF (ENSFHEG00000014120)	nfe2l3 (ENSFHEG00000014108)	cbx3a (ENSFHEG00000014100)
Sheepshead minnow	MODERN SPECIES	210					dlx6a (ENSCVAG00000008641)	dlx5a (ENSCVAG00000008663)	ago2 (ENSCVAG00000008763)	ENSCVAG00000008840	npy (ENSCVAG00000000879)	fam221a (ENSCVAG00000008865)	ccdc126 (ENSCVAG00000008872)	igf2bp3 (ENSCVAG00000008891)	ENSCVAG00000008949	ENSCVAG00000008983	KCNH8 (ENSCVAG00000009230)	satb1a (ENSCVAG00000009409) ##22	tbc1d5 (ENSCVAG00000000276)	ENSCVAG00000000715	dazl (ENSCVAG00000009591) ##24	RFTN1 (ENSCVAG00000009601) ##26	oxnad1 (ENSCVAG00000009610)	ENSCVAG00000009624	ENSCVAG00000009629	FKBP14 (ENSCVAG00000009636)	ENSCVAG00000009691	COLQ (ENSCVAG00000009761)	ENSCVAG00000009771	npvf (ENSCVAG00000009777)	nfe2l3 (ENSCVAG00000009783)	cbx3a (ENSCVAG00000009811)	snx10a (ENSCVAG00000009971)
Oryzias	ANCESTRAL SPECIES	22	ENSGT00940000158874	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x.f ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315	ENSGT00940000155029.c.a.f
Oryzias_b	ANCESTRAL SPECIES	22	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000163409	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x.f ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315	ENSGT00940000155029.c.a.f
Indian medaka	MODERN SPECIES	3	asb4 (ENSOMEG00000017453)	pdk4 (ENSOMEG00000017495)	DYNC1I1 (ENSOMEG00000017610)	ENSOMEG00000017662	dlx6a (ENSOMEG00000017680)	dlx5a (ENSOMEG00000017685)	ago2 (ENSOMEG00000017751)	ENSOMEG00000017820	npy (ENSOMEG00000001014)	ccdc126 (ENSOMEG00000017851)	tra2a (ENSOMEG00000017864)	igf2bp3 (ENSOMEG00000017916)	GPNMB (ENSOMEG00000017953)	ENSOMEG00000017971	KCNH8 (ENSOMEG00000018013)	satb1a (ENSOMEG00000018126) ##22	tbc1d5 (ENSOMEG00000018290)	ENSOMEG00000018339	dazl (ENSOMEG00000018395) ##24	RFTN1 (ENSOMEG00000018428) ##26	oxnad1 (ENSOMEG00000018467)	ENSOMEG00000018478	ENSOMEG00000018495	FKBP14 (ENSOMEG00000018518)	ENSOMEG00000018555	ENSOMEG00000018577	nfe2l3 (ENSOMEG00000018610)	cbx3a (ENSOMEG00000018650)	snx10a (ENSOMEG00000018674)	hoxa1a (ENSOMEG00000018694)	ENSOMEG00000000777
Javanese ricefish	MODERN SPECIES	2	phf14 (ENSOJAG00000008518)	glcci1a (ENSOJAG00000008406)	rpa3 (ENSOJAG00000008383)	c1galt1a (ENSOJAG00000008291)	sdhaf3 (ENSOJAG00000008283)	ENSOJAG00000008255	si:ch211-165i18.2 (ENSOJAG00000008245)	ENSOJAG00000007010	npy (ENSOJAG00000006875)	ccdc126 (ENSOJAG00000006866)	tra2a (ENSOJAG00000006860)	igf2bp3 (ENSOJAG00000006832)	GPNMB (ENSOJAG00000006814)	ENSOJAG00000006792	KCNH8 (ENSOJAG00000006704)	ENSOJAG00000006657 ##22	ENSOJAG00000006651	tbc1d5 (ENSOJAG00000005575)	ENSOJAG00000004895	dazl (ENSOJAG00000004441) ##24	ENSOJAG00000004362 ##26	ENSOJAG00000004347 ##26	oxnad1 (ENSOJAG00000004338)	ENSOJAG00000004313	FKBP14 (ENSOJAG00000004301)	ENSOJAG00000004275	ENSOJAG00000004264	nfe2l3 (ENSOJAG00000004247)	cbx3a (ENSOJAG00000004172)	snx10a (ENSOJAG00000004089)	hoxa1a (ENSOJAG00000004073)
Oryzias_a	ANCESTRAL SPECIES	30	ENSGT00940000158874	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x.f ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315	ENSGT00940000155029.c.a.f
Chinese medaka	MODERN SPECIES	1110	ENSOSIG00000020413	ENSOSIG00000020409	asb4 (ENSOSIG00000020407)	pdk4 (ENSOSIG00000019817)	DYNC1I1 (ENSOSIG00000016953)	sem1 (ENSOSIG00000016823)	dlx6a (ENSOSIG00000016819)	dlx5a (ENSOSIG00000016818)	ago2 (ENSOSIG00000013325)	ENSOSIG00000011278	npy (ENSOSIG00000011250)	tra2a (ENSOSIG00000011240)	igf2bp3 (ENSOSIG00000011070)	GPNMB (ENSOSIG00000011054)	KCNH8 (ENSOSIG00000011035)	satb1a (ENSOSIG00000011025) ##22	tbc1d5 (ENSOSIG00000010737)	ENSOSIG00000010245	ENSOSIG00000010223 ##26	ENSOSIG00000010221 ##26	oxnad1 (ENSOSIG00000010218)	ENSOSIG00000010214	ENSOSIG00000010200	FKBP14 (ENSOSIG00000010199)	ENSOSIG00000010198	nfe2l3 (ENSOSIG00000010197)	cbx3a (ENSOSIG00000010157)	snx10a (ENSOSIG00000010148)	hoxa1a (ENSOSIG00000010147)	hoxa3a (ENSOSIG00000010145)	HOXA4 (ENSOSIG00000010142)
Japanese Medaka HdrR	MODERN SPECIES	2	ENSORLG00000022924	pdk4 (ENSORLG00000004460)	DYNC1I1 (ENSORLG00000004516)	sem1 (ENSORLG00000027365)	dlx6a (ENSORLG00000004542)	dlx5a (ENSORLG00000004561)	AGO2 (ENSORLG00000004615)	ENSORLG00000004642	npy (ENSORLG00000004649)	ccdc126 (ENSORLG00000023752)	tra2a (ENSORLG00000022191)	igf2bp3 (ENSORLG00000004712)	GPNMB (ENSORLG00000004727)	ENSORLG00000004737	KCNH8 (ENSORLG00000004750)	ENSORLG00000004761 ##22	tbc1d5 (ENSORLG00000004796)	ENSORLG00000004834	dazl (ENSORLG00000004848) ##24	RFTN1 (ENSORLG00000004886) ##26	oxnad1 (ENSORLG00000004904)	ENSORLG00000004907	ENSORLG00000025388	FKBP14 (ENSORLG00000004912)	ENSORLG00000004944	ENSORLG00000025295	nfe2l3 (ENSORLG00000004962)	cbx3a (ENSORLG00000029462)	snx10a (ENSORLG00000026166)	hoxa1a (ENSORLG00000004981)	ENSORLG00000004987
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959.x.b	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959.x.b	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959.x.b	ENSGT00940000154959.w	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k
Lyretail cichlid	MODERN SPECIES	302	DYNC1I1 (ENSNBRG00000006260)	SLC25A13 (ENSNBRG00000006201)	sem1 (ENSNBRG00000006187)	dlx6a (ENSNBRG00000006177)	dlx5a (ENSNBRG00000006163)	ago2 (ENSNBRG00000006100)	ENSNBRG00000006059	npy (ENSNBRG00000006043)	fam221a (ENSNBRG00000006017)	ccdc126 (ENSNBRG00000006012)	tra2a (ENSNBRG00000005992)	igf2bp3 (ENSNBRG00000005961)	GPNMB (ENSNBRG00000005918)	GALNT15 (ENSNBRG00000005894)	ENSNBRG00000005869	satb1a (ENSNBRG00000005825) ##22	tbc1d5 (ENSNBRG00000005765)	ENSNBRG00000005550	ENSNBRG00000005462	dazl (ENSNBRG00000005425) ##24	ENSNBRG00000005412 ##26	oxnad1 (ENSNBRG00000005394)	ENSNBRG00000005368	ENSNBRG00000005349	FKBP14 (ENSNBRG00000005341)	FKBP14 (ENSNBRG00000005325)	ENSNBRG00000005295	ENSNBRG00000005171	ENSNBRG00000005134	nfe2l3 (ENSNBRG00000005122)	cbx3a (ENSNBRG00000005093)
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239.g.a	ENSGT00940000155239.h	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959.w	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00960000188241	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k
Burton s mouthbrooder	MODERN SPECIES	367	DYNC1I1 (ENSHBUG00000018787)	SLC25A13 (ENSHBUG00000018729)	sem1 (ENSHBUG00000018678)	dlx6 (ENSHBUG00000018576)	dlx5 (ENSHBUG00000018550)	ago2 (ENSHBUG00000018515)	ENSHBUG00000018379	npy (ENSHBUG00000018277)	fam221a (ENSHBUG00000018259)	ccdc126 (ENSHBUG00000018240)	tra2a (ENSHBUG00000018234)	igf2bp3 (ENSHBUG00000018217)	GPNMB (ENSHBUG00000018133)	GALNT15 (ENSHBUG00000018069)	KCNH8 (ENSHBUG00000018004)	satb1a (ENSHBUG00000017651) ##22	tbc1d5 (ENSHBUG00000017515)	ENSHBUG00000017472	ENSHBUG00000017460	dazl (ENSHBUG00000017426) ##24	ENSHBUG00000017374 ##26	oxnad1 (ENSHBUG00000017361)	ENSHBUG00000017327	FKBP14 (ENSHBUG00000017312)	ENSHBUG00000017296	ENSHBUG00000000517	ENSHBUG00000017056	nfe2l3 (ENSHBUG00000017043)	cbx3a (ENSHBUG00000017035)	snx10a (ENSHBUG00000017009)	hoxa1a (ENSHBUG00000016813)
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239.h	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959.x.b	ENSGT00940000154959.w	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00960000188241	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305
P. nyererei	MODERN SPECIES	325	DYNC1I1 (ENSPNYG00000019803)	SLC25A13 (ENSPNYG00000019842)	sem1 (ENSPNYG00000019884)	dlx6a (ENSPNYG00000019892)	dlx5a (ENSPNYG00000019903)	ago2 (ENSPNYG00000019928)	ENSPNYG00000020034	npy (ENSPNYG00000020082)	fam221a (ENSPNYG00000020102)	ccdc126 (ENSPNYG00000020117)	tra2a (ENSPNYG00000020134)	igf2bp3 (ENSPNYG00000020180)	GPNMB (ENSPNYG00000020212)	GALNT15 (ENSPNYG00000020254)	KCNH8 (ENSPNYG00000020303)	satb1a (ENSPNYG00000020357) ##22	tbc1d5 (ENSPNYG00000020431)	ENSPNYG00000020478	dazl (ENSPNYG00000020484) ##24	ENSPNYG00000020505 ##26	oxnad1 (ENSPNYG00000020517)	ENSPNYG00000020536	ENSPNYG00000020546	FKBP14 (ENSPNYG00000020583)	ENSPNYG00000020598	ENSPNYG00000020637	nfe2l3 (ENSPNYG00000020654)	cbx3a (ENSPNYG00000020660)	snx10a (ENSPNYG00000020679)	hoxa1a (ENSPNYG00000020732)	ENSPNYG00000020762
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239.h	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959.x.b	ENSGT00940000154959.w	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k
Eastern happy	MODERN SPECIES	13	SLC25A13 (ENSACLG00000024494)	sem1 (ENSACLG00000024578)	dlx6a (ENSACLG00000024649)	dlx5a (ENSACLG00000024663)	ENSACLG00000024671	ago2 (ENSACLG00000024684)	ENSACLG00000024741	npy (ENSACLG00000024823)	fam221a (ENSACLG00000024830)	ccdc126 (ENSACLG00000024839)	tra2a (ENSACLG00000024845)	igf2bp3 (ENSACLG00000000050)	GPNMB (ENSACLG00000000082)	ENSACLG00000000148	ENSACLG00000000166	satb1a (ENSACLG00000000178) ##22	ENSACLG00000000341	tbc1d5 (ENSACLG00000000358)	ENSACLG00000000493	ENSACLG00000000511	dazl (ENSACLG00000000529) ##24	ENSACLG00000000599 ##26	oxnad1 (ENSACLG00000000611)	ENSACLG00000000633	ENSACLG00000000637	FKBP14 (ENSACLG00000000687)	COLQ (ENSACLG00000000784)	ENSACLG00000000794	ENSACLG00000000868	nfe2l3 (ENSACLG00000000873)	cbx3a (ENSACLG00000000888)
Zebra mbuna	MODERN SPECIES	1104	DYNC1I1 (ENSMZEG00005008570)	SLC25A13 (ENSMZEG00005008730)	sem1 (ENSMZEG00005008764)	dlx6a (ENSMZEG00005008972)	dlx5a (ENSMZEG00005008988)	ago2 (ENSMZEG00005008998)	ENSMZEG00005009081	npy (ENSMZEG00005009105)	fam221a (ENSMZEG00005009119)	ccdc126 (ENSMZEG00005009136)	tra2a (ENSMZEG00005009142)	igf2bp3 (ENSMZEG00005009164)	GPNMB (ENSMZEG00005009215)	ENSMZEG00005009262	ENSMZEG00005009304	satb1a (ENSMZEG00005009332) ##22	tbc1d5 (ENSMZEG00005009376)	ENSMZEG00005009457	ENSMZEG00005009477	ENSMZEG00005009496	dazl (ENSMZEG00005009515) ##24	ENSMZEG00005009549 ##26	oxnad1 (ENSMZEG00005009577)	ENSMZEG00005009592	ENSMZEG00005009600	FKBP14 (ENSMZEG00005009610)	ENSMZEG00005009648	ENSMZEG00005009664	ENSMZEG00005010069	nfe2l3 (ENSMZEG00005010077)	cbx3a (ENSMZEG00005010086)
Nile tilapia	MODERN SPECIES	13	DYNC1I1 (ENSONIG00000010764)	SLC25A13 (ENSONIG00000010758)	sem1 (ENSONIG00000041347)	dlx6 (ENSONIG00000035762)	dlx5 (ENSONIG00000040151)	ago2 (ENSONIG00000010747)	ENSONIG00000004490	npy (ENSONIG00000037888)	fam221a (ENSONIG00000004501)	ccdc126 (ENSONIG00000033679)	tra2a (ENSONIG00000033161)	igf2bp3 (ENSONIG00000004506)	GPNMB (ENSONIG00000004514)	GALNT15 (ENSONIG00000004516)	ENSONIG00000004527	satb1a (ENSONIG00000004539) ##22	tbc1d5 (ENSONIG00000004554)	ENSONIG00000004560	ENSONIG00000039060	dazl (ENSONIG00000004563) ##24	ENSONIG00000004569 ##26	oxnad1 (ENSONIG00000004575)	ENSONIG00000021345	ENSONIG00000004576	FKBP14 (ENSONIG00000004578)	ENSONIG00000004581	ENSONIG00000008589	ENSONIG00000004585	nfe2l3 (ENSONIG00000004586)	cbx3a (ENSONIG00000004588)	snx10a (ENSONIG00000004590)
Midas cichlid	MODERN SPECIES	563	DYNC1I1 (ENSACIG00000001041)	SLC25A13 (ENSACIG00000001085)	ENSACIG00000001146	dlx6a (ENSACIG00000001161)	dlx5a (ENSACIG00000001172)	ago2 (ENSACIG00000001179)	ENSACIG00000001238	npy (ENSACIG00000001268)	fam221a (ENSACIG00000001284)	ccdc126 (ENSACIG00000001326)	tra2a (ENSACIG00000001333)	igf2bp3 (ENSACIG00000001392)	GPNMB (ENSACIG00000001432)	ENSACIG00000001491	ENSACIG00000001575	satb1a (ENSACIG00000001608) ##22	tbc1d5 (ENSACIG00000001681)	ENSACIG00000001735	DNAH3 (ENSACIG00000001775)	dazl (ENSACIG00000001931) ##24	ENSACIG00000001960 ##26	oxnad1 (ENSACIG00000001969)	ENSACIG00000001986	ENSACIG00000001998	FKBP14 (ENSACIG00000002030)	ENSACIG00000002046	ENSACIG00000002071	nfe2l3 (ENSACIG00000002095)	cbx3a (ENSACIG00000002111)	snx10a (ENSACIG00000002122)	hoxa1a (ENSACIG00000002201)
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Pomacentridae_A	ANCESTRAL SPECIES	6	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Amphiprion	ANCESTRAL SPECIES	16	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Clown anemonefish	MODERN SPECIES	1854													ENSAOCG00000019325	ENSAOCG00000019353	ENSAOCG00000019370	satb1a (ENSAOCG00000019435) ##22	tbc1d5 (ENSAOCG00000001411)	ENSAOCG00000019496	DNAH3 (ENSAOCG00000001983)	dazl (ENSAOCG00000019742) ##24	ENSAOCG00000002490 ##26	oxnad1 (ENSAOCG00000019771)	ENSAOCG00000002340	ENSAOCG00000001440	FKBP14 (ENSAOCG00000019796)	COLQ (ENSAOCG00000001460)	ENSAOCG00000001463	ENSAOCG00000019842	nfe2l3 (ENSAOCG00000001467)	cbx3a (ENSAOCG00000019896)	snx10a (ENSAOCG00000019909)
Orange clownfish	MODERN SPECIES	8	DYNC1I1 (ENSAPEG00000018148)	SLC25A13 (ENSAPEG00000018252)	sem1 (ENSAPEG00000018314)	dlx6a (ENSAPEG00000018337)	dlx5a (ENSAPEG00000018406)	ago2 (ENSAPEG00000018425)	ENSAPEG00000018480	npy (ENSAPEG00000018511)	fam221a (ENSAPEG00000018529)	ccdc126 (ENSAPEG00000018545)	tra2a (ENSAPEG00000018557)	igf2bp3 (ENSAPEG00000018592)	GPNMB (ENSAPEG00000018638)	ENSAPEG00000018653	ENSAPEG00000018780	satb1a (ENSAPEG00000018810) ##22	tbc1d5 (ENSAPEG00000018871)	ENSAPEG00000018980	ENSAPEG00000018987	ENSAPEG00000018991	ENSAPEG00000019029	ENSAPEG00000019059	dazl (ENSAPEG00000019114) ##24	ENSAPEG00000019138 ##26	ENSAPEG00000019149 ##26	oxnad1 (ENSAPEG00000019163)	ENSAPEG00000019182	ENSAPEG00000019216	FKBP14 (ENSAPEG00000019236)	COLQ (ENSAPEG00000019258)	ENSAPEG00000019301
Spiny chromis	MODERN SPECIES	411		SLC25A13 (ENSAPOG00000017725)	sem1 (ENSAPOG00000017650)	dlx6a (ENSAPOG00000017638)	dlx5a (ENSAPOG00000017616)	ago2 (ENSAPOG00000017586)	ENSAPOG00000017487	npy (ENSAPOG00000017473)	fam221a (ENSAPOG00000017452)	ccdc126 (ENSAPOG00000017436)	tra2a (ENSAPOG00000017425)	igf2bp3 (ENSAPOG00000017377)	GPNMB (ENSAPOG00000017314)	ENSAPOG00000017309	KCNH8 (ENSAPOG00000017292)	ENSAPOG00000017277 ##22	tbc1d5 (ENSAPOG00000017247)	ENSAPOG00000017115	ENSAPOG00000017096
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	1762															ENSSPAG00000012761	ENSSPAG00000012750 ##22	SATB2 (ENSSPAG00000012620) #22	ENSSPAG00000012577	crygm6 (ENSSPAG00000012558)	crygmxl1 (ENSSPAG00000012535)	ENSSPAG00000012521	ENSSPAG00000012451	ENSSPAG00000012426	ENSSPAG00000012413	crygs3 (ENSSPAG00000012391)	etv5b (ENSSPAG00000012323)	ENSSPAG00000012312	ENSSPAG00000012301
Bicolor damselfish	MODERN SPECIES	1378								npy (ENSSPAG00000004253)	fam221a (ENSSPAG00000004212)	ccdc126 (ENSSPAG00000004191)	tra2a (ENSSPAG00000004184)	igf2bp3 (ENSSPAG00000004157)	GPNMB (ENSSPAG00000004110)	ENSSPAG00000003975	ENSSPAG00000003932	ENSSPAG00000003915 ##22	tbc1d5 (ENSSPAG00000003770)
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Anabantaria	ANCESTRAL SPECIES	16	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Climbing perch	MODERN SPECIES	2	DYNC1I1 (ENSATEG00000000133)	ENSATEG00000000469	ENSATEG00000000483	dlx6a (ENSATEG00000000495)	dlx5a (ENSATEG00000026247)	ago2 (ENSATEG00000000529)	ENSATEG00000000607	npy (ENSATEG00000000620)	fam221a (ENSATEG00000000634)	ccdc126 (ENSATEG00000000665)	tra2a (ENSATEG00000000671)	igf2bp3 (ENSATEG00000000681)	GPNMB (ENSATEG00000000764)	ENSATEG00000000830	ENSATEG00000000940	satb1a (ENSATEG00000000974) ##22	tbc1d5 (ENSATEG00000001109)	ENSATEG00000001204	ENSATEG00000027399	dazl (ENSATEG00000001349) ##24	ENSATEG00000001386 ##26	ENSATEG00000001396 ##26	oxnad1 (ENSATEG00000001424)	ENSATEG00000001434	ENSATEG00000001464	ENSATEG00000001514	ENSATEG00000001525	ENSATEG00000001574	nfe2l3 (ENSATEG00000001620)	CBX3 (ENSATEG00000001629)	snx10a (ENSATEG00000001661)
Siamese fighting fish	MODERN SPECIES	2	asb4 (ENSBSLG00000004720)	pdk4 (ENSBSLG00000004706)	DYNC1I1 (ENSBSLG00000004114)	sem1 (ENSBSLG00000003587)	dlx6a (ENSBSLG00000003257)	dlx5a (ENSBSLG00000003256)	ago2 (ENSBSLG00000002868)	ENSBSLG00000002388	npy (ENSBSLG00000016166)	ccdc126 (ENSBSLG00000016161)	tra2a (ENSBSLG00000016152)	igf2bp3 (ENSBSLG00000014618)	GPNMB (ENSBSLG00000014590)	ENSBSLG00000014584	ENSBSLG00000014563	satb1a (ENSBSLG00000014540) ##22	tbc1d5 (ENSBSLG00000012727)	ENSBSLG00000012668	DNAH3 (ENSBSLG00000012261)	dazl (ENSBSLG00000012205) ##24	ENSBSLG00000012189 ##26	oxnad1 (ENSBSLG00000012170)	ENSBSLG00000012157	ENSBSLG00000012133	FKBP14 (ENSBSLG00000012125)	ENSBSLG00000012090	ENSBSLG00000012060	nfe2l3 (ENSBSLG00000012036)	cbx3a (ENSBSLG00000011919)	snx10a (ENSBSLG00000011898)	hoxa1a (ENSBSLG00000011877)
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000008797	ENSMAMG00000025565	sem1 (ENSMAMG00000008788)	dlx6a (ENSMAMG00000008761)	dlx5a (ENSMAMG00000008747)	ago2 (ENSMAMG00000008662)	ENSMAMG00000008621	npy (ENSMAMG00000008616)	fam221a (ENSMAMG00000008603)	ccdc126 (ENSMAMG00000008592)	tra2a (ENSMAMG00000027878)	igf2bp3 (ENSMAMG00000008545)	GPNMB (ENSMAMG00000008513)	ENSMAMG00000008498	ENSMAMG00000008473	satb1a (ENSMAMG00000027316) ##22	tbc1d5 (ENSMAMG00000008426)	ENSMAMG00000008399	ENSMAMG00000024303	ENSMAMG00000028009	ENSMAMG00000025888	dazl (ENSMAMG00000008203) ##24	ENSMAMG00000024330 ##26	ENSMAMG00000028333 ##26	oxnad1 (ENSMAMG00000026716)	ENSMAMG00000008108	ENSMAMG00000008087	ENSMAMG00000027344	ENSMAMG00000008039	ENSMAMG00000008025	nfe2l3 (ENSMAMG00000008016)
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Pleuronectoidei	ANCESTRAL SPECIES	15	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Turbot	MODERN SPECIES	14	DYNC1I1 (ENSSMAG00000013803)	SLC25A13 (ENSSMAG00000013855)	sem1 (ENSSMAG00000014052)	dlx6a (ENSSMAG00000014067)	dlx5a (ENSSMAG00000014079)	ago2 (ENSSMAG00000014089)	ENSSMAG00000014160	npy (ENSSMAG00000014204)	fam221a (ENSSMAG00000014220)	ccdc126 (ENSSMAG00000014236)	tra2a (ENSSMAG00000014242)	igf2bp3 (ENSSMAG00000014262)	GPNMB (ENSSMAG00000014341)	ENSSMAG00000014358	ENSSMAG00000014391	satb1a (ENSSMAG00000014406) ##22	tbc1d5 (ENSSMAG00000014510)	ENSSMAG00000014560	ENSSMAG00000036740	dazl (ENSSMAG00000014694) ##24	ENSSMAG00000014721 ##26	oxnad1 (ENSSMAG00000014752)	ENSSMAG00000014767	ENSSMAG00000014778	ENSSMAG00000014788	ENSSMAG00000014800	ENSSMAG00000014822	ENSSMAG00000014833	nfe2l3 (ENSSMAG00000014852)	CBX3 (ENSSMAG00000014860)	snx10a (ENSSMAG00000014876)
Tongue sole	MODERN SPECIES	9	pdk4 (ENSCSEG00000012385)	DYNC1I1 (ENSCSEG00000012327)	ENSCSEG00000012316	dlx6a (ENSCSEG00000012309)	dlx5a (ENSCSEG00000012302)	ago2 (ENSCSEG00000012273)	ENSCSEG00000012240	npy (ENSCSEG00000012223)	fam221a (ENSCSEG00000012215)	ccdc126 (ENSCSEG00000012212)	tra2a (ENSCSEG00000012193)	igf2bp3 (ENSCSEG00000012106)	GPNMB (ENSCSEG00000012082)	ENSCSEG00000012069	ENSCSEG00000012049	ENSCSEG00000012000 ##22	tbc1d5 (ENSCSEG00000011935)	khdrbs1b (ENSCSEG00000011915)	marcksl1b (ENSCSEG00000011910)	fndc5b (ENSCSEG00000011906)	ldlrap1a (ENSCSEG00000011890)	maco1a (ENSCSEG00000011871)	ENSCSEG00000011789	e2f3 (ENSCSEG00000011783)	sox4a (ENSCSEG00000011777)	nrsn1l (ENSCSEG00000011766)	lpcat1 (ENSCSEG00000011757)	ENSCSEG00000011751	ndufs6 (ENSCSEG00000011739)	irx4b (ENSCSEG00000011716)	irx1b (ENSCSEG00000011711)
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Seriola	ANCESTRAL SPECIES	12	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Yellowtail amberjack	MODERN SPECIES	3132		SLC25A13 (ENSSLDG00000025586)	sem1 (ENSSLDG00000025585)	dlx6a (ENSSLDG00000025584)	dlx5a (ENSSLDG00000025583)	ago2 (ENSSLDG00000025582)	ENSSLDG00000025581	npy (ENSSLDG00000025580)	fam221a (ENSSLDG00000025579)	ccdc126 (ENSSLDG00000025578)	tra2a (ENSSLDG00000025577)	igf2bp3 (ENSSLDG00000025576)	GPNMB (ENSSLDG00000025575)	ENSSLDG00000025574	ENSSLDG00000025573	satb1a (ENSSLDG00000025572) ##22	tbc1d5 (ENSSLDG00000025571)
Greater amberjack	MODERN SPECIES	48	DYNC1I1 (ENSSDUG00000005935)	SLC25A13 (ENSSDUG00000005870)	sem1 (ENSSDUG00000005851)	dlx6a (ENSSDUG00000005796)	dlx5a (ENSSDUG00000005778)	ago2 (ENSSDUG00000005726)	ENSSDUG00000005675	npy (ENSSDUG00000005657)	fam221a (ENSSDUG00000005642)	ccdc126 (ENSSDUG00000005634)	tra2a (ENSSDUG00000005610)	igf2bp3 (ENSSDUG00000005535)	GPNMB (ENSSDUG00000005497)	ENSSDUG00000005485	ENSSDUG00000005464	satb1a (ENSSDUG00000005436) ##22	tbc1d5 (ENSSDUG00000005303)	ENSSDUG00000005269	ENSSDUG00000005261	ENSSDUG00000005250	ENSSDUG00000005235	ENSSDUG00000005221	ENSSDUG00000005200	dazl (ENSSDUG00000005172) ##24	ENSSDUG00000005158 ##26	oxnad1 (ENSSDUG00000005142)	ENSSDUG00000005132	ENSSDUG00000005117	FKBP14 (ENSSDUG00000005096)	ENSSDUG00000005062	ENSSDUG00000005049
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	3	SLC25A13 (ENSLCAG00010018296)	sem1 (ENSLCAG00010018281)	dlx6a (ENSLCAG00010018276)	dlx5a (ENSLCAG00010018273)	ago2 (ENSLCAG00010017287)	ENSLCAG00010017125	npy (ENSLCAG00010017108)	fam221a (ENSLCAG00010017098)	ENSLCAG00010017096	ccdc126 (ENSLCAG00010017095)	tra2a (ENSLCAG00010017089)	igf2bp3 (ENSLCAG00010017069)	GPNMB (ENSLCAG00010017059)	ENSLCAG00010017055	ENSLCAG00010017049	ENSLCAG00010017042 ##22	satb1a (ENSLCAG00010017040) ##22	tbc1d5 (ENSLCAG00010016938)	ENSLCAG00010016925	DNAH3 (ENSLCAG00010016780)	dazl (ENSLCAG00010016730) ##24	ENSLCAG00010016725 ##26	oxnad1 (ENSLCAG00010016722)	ENSLCAG00010016719	ENSLCAG00010016711	FKBP14 (ENSLCAG00010016709)	COLQ (ENSLCAG00010016703)	ENSLCAG00010016702	ENSLCAG00010016700	nfe2l3 (ENSLCAG00010016699)	cbx3a (ENSLCAG00010016686)
Barramundi perch	MODERN SPECIES	3	sem1 (ENSLCAG00010018281)	dlx6a (ENSLCAG00010018276)	dlx5a (ENSLCAG00010018273)	ago2 (ENSLCAG00010017287)	ENSLCAG00010017125	npy (ENSLCAG00010017108)	fam221a (ENSLCAG00010017098)	ENSLCAG00010017096	ccdc126 (ENSLCAG00010017095)	tra2a (ENSLCAG00010017089)	igf2bp3 (ENSLCAG00010017069)	GPNMB (ENSLCAG00010017059)	ENSLCAG00010017055	ENSLCAG00010017049	ENSLCAG00010017042 ##22	satb1a (ENSLCAG00010017040) ##22	tbc1d5 (ENSLCAG00010016938)	ENSLCAG00010016925	DNAH3 (ENSLCAG00010016780)	dazl (ENSLCAG00010016730) ##24	ENSLCAG00010016725 ##26	oxnad1 (ENSLCAG00010016722)	ENSLCAG00010016719	ENSLCAG00010016711	FKBP14 (ENSLCAG00010016709)	COLQ (ENSLCAG00010016703)	ENSLCAG00010016702	ENSLCAG00010016700	nfe2l3 (ENSLCAG00010016699)	cbx3a (ENSLCAG00010016686)	snx10a (ENSLCAG00010016683)
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Tetraodontidae	ANCESTRAL SPECIES	56	ENSGT00390000005672.a.b.d	ENSGT00940000155538	ENSGT00940000158874	ENSGT01030000234646.B.a.a.a.b	ENSGT00940000156032.`b.b.b	ENSGT00940000163409	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000154957.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000155660.a
Fugu	MODERN SPECIES	3	sgce (ENSTRUG00000015890)	PPP1R9A (ENSTRUG00000015914)	asb4 (ENSTRUG00000015951)	pdk4 (ENSTRUG00000015972)	DYNC1I1 (ENSTRUG00000020585)	ENSTRUG00000020257	dlx6a (ENSTRUG00000007566)	dlx5a (ENSTRUG00000019997)	ENSTRUG00000006945	npy (ENSTRUG00000006827)	fam221a (ENSTRUG00000033149)	ccdc126 (ENSTRUG00000006674)	igf2bp3 (ENSTRUG00000006094)	ENSTRUG00000005588	ENSTRUG00000005492	ENSTRUG00000005121 ##22	ENSTRUG00000003906	med30 (ENSTRUG00000003806)	EXT1 (ENSTRUG00000002816)	SAMD12 (ENSTRUG00000003311)	abrab (ENSTRUG00000003433)	angpt1 (ENSTRUG00000025321)	sdc2 (ENSTRUG00000032163)	tpmt.1 (ENSTRUG00000004346)	ENSTRUG00000004561	zgc:114119 (ENSTRUG00000030461)	anxa14 (ENSTRUG00000004568)	ENSTRUG00000005038	ENSTRUG00000005618	ENSTRUG00000005759	ENSTRUG00000006367
Tetraodon	MODERN SPECIES	16	col1a2 (ENSTNIG00000017765)	DYNC1I1 (ENSTNIG00000017764)	sem1 (ENSTNIG00000017763)	dlx6a (ENSTNIG00000017762)	dlx5a (ENSTNIG00000017761)	ago2 (ENSTNIG00000017760)	ENSTNIG00000017759	npy (ENSTNIG00000017758)	fam221a (ENSTNIG00000017757)	ccdc126 (ENSTNIG00000017756)	igf2bp3 (ENSTNIG00000017755)	ENSTNIG00000017754	ENSTNIG00000017753	ENSTNIG00000017752	ENSTNIG00000017751	ENSTNIG00000017750 ##22	tbc1d5 (ENSTNIG00000017749)	ENSTNIG00000017748	med30 (ENSTNIG00000000448)	EXT1 (ENSTNIG00000017747)	abrab (ENSTNIG00000017746)	abrab (ENSTNIG00000017745)	angpt1 (ENSTNIG00000017744)	sdc2 (ENSTNIG00000017743)	tpmt.1 (ENSTNIG00000000588)	ENSTNIG00000017742	zgc:114119 (ENSTNIG00000017741)	anxa14 (ENSTNIG00000017740)	ENSTNIG00000017739	ENSTNIG00000017738	ENSTNIG00000017737
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Ballan wrasse	MODERN SPECIES	297	pdk4 (ENSLBEG00000004851)	DYNC1I1 (ENSLBEG00000004923)	sem1 (ENSLBEG00000005037)	dlx6a (ENSLBEG00000005062)	dlx5a (ENSLBEG00000005078)	ago2 (ENSLBEG00000005112)	ENSLBEG00000005182	npy (ENSLBEG00000005236)	fam221a (ENSLBEG00000005254)	ccdc126 (ENSLBEG00000005284)	tra2a (ENSLBEG00000005297)	igf2bp3 (ENSLBEG00000005339)	GPNMB (ENSLBEG00000005453)	ENSLBEG00000005479	ENSLBEG00000005497	satb1a (ENSLBEG00000005545) ##22	tbc1d5 (ENSLBEG00000005629)	ENSLBEG00000005694	DNAH3 (ENSLBEG00000005767)	dazl (ENSLBEG00000006023) ##24	ENSLBEG00000006086 ##26	oxnad1 (ENSLBEG00000006128)	ENSLBEG00000006164	ENSLBEG00000006184	FKBP14 (ENSLBEG00000006207)	ENSLBEG00000006241	ENSLBEG00000006274	ENSLBEG00000006286	nfe2l3 (ENSLBEG00000006302)	cbx3a (ENSLBEG00000006320)	snx10a (ENSLBEG00000006336)
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000163409	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
European seabass	MODERN SPECIES	22	DYNC1I1 (ENSDLAG00005011445)	SLC25A13 (ENSDLAG00005010129)	ENSDLAG00005010087	dlx6a (ENSDLAG00005033876)	dlx5a (ENSDLAG00005034499)	ago2 (ENSDLAG00005009789)	ENSDLAG00005008554	npy (ENSDLAG00005008510)	fam221a (ENSDLAG00005008493)	ccdc126 (ENSDLAG00005033349)	tra2a (ENSDLAG00005008478)	igf2bp3 (ENSDLAG00005007961)	GPNMB (ENSDLAG00005007926)	ENSDLAG00005007909	ENSDLAG00005007626	satb1a (ENSDLAG00005031860) ##22	tbc1d5 (ENSDLAG00005006722)	ENSDLAG00005005956	ENSDLAG00005003054	dazl (ENSDLAG00005002759) ##24	ENSDLAG00005002699 ##26	oxnad1 (ENSDLAG00005002662)	ENSDLAG00005002604	ENSDLAG00005002367	ENSDLAG00005030672	ENSDLAG00005002300	ENSDLAG00005019969	NFE2L3 (ENSDLAG00005028211)	SNX10 (ENSDLAG00005019932)	hoxa1a (ENSDLAG00005019926)	hoxa3a (ENSDLAG00005026758)
Large yellow croaker	MODERN SPECIES	484	DYNC1I1 (ENSLCRG00005020182)	SLC25A13 (ENSLCRG00005020163)	ENSLCRG00005020156	dlx6a (ENSLCRG00005020154)	dlx5a (ENSLCRG00005020152)	ago2 (ENSLCRG00005016042)	ENSLCRG00005014982	npy (ENSLCRG00005014974)	fam221a (ENSLCRG00005014961)	ccdc126 (ENSLCRG00005014960)	ENSLCRG00005014959	igf2bp3 (ENSLCRG00005014865)	GPNMB (ENSLCRG00005014861)	ENSLCRG00005014856	ENSLCRG00005014559	satb1a (ENSLCRG00005014537) ##22	tbc1d5 (ENSLCRG00005011243)	ENSLCRG00005011199	DNAH3 (ENSLCRG00005008939)	dazl (ENSLCRG00005008918) ##24	ENSLCRG00005008917 ##26	oxnad1 (ENSLCRG00005008916)	ENSLCRG00005008913	ENSLCRG00005008912	FKBP14 (ENSLCRG00005008910)	COLQ (ENSLCRG00005008908)	ENSLCRG00005008907	ENSLCRG00005008906	nfe2l3 (ENSLCRG00005008904)	cbx3a (ENSLCRG00005008899)	snx10a (ENSLCRG00005008897)
Gilthead seabream	MODERN SPECIES	17	SLC25A13 (ENSSAUG00010009030)	sem1 (ENSSAUG00010013413)	dlx6a (ENSSAUG00010013414)	dlx5a (ENSSAUG00010013417)	ago2 (ENSSAUG00010013491)	ENSSAUG00010019199	npy (ENSSAUG00010020936)	fam221a (ENSSAUG00010020937)	ccdc126 (ENSSAUG00010020938)	tra2a (ENSSAUG00010020940)	igf2bp3 (ENSSAUG00010020965)	GPNMB (ENSSAUG00010022256)	GALNT15 (ENSSAUG00010022257)	ENSSAUG00010022259	ENSSAUG00010022260	satb1a (ENSSAUG00010022261) ##22	tbc1d5 (ENSSAUG00010022263)	ENSSAUG00010022956	DNAH3 (ENSSAUG00010023021)	dazl (ENSSAUG00010023098) ##24	ENSSAUG00010023101 ##26	oxnad1 (ENSSAUG00010023102)	ENSSAUG00010023103	ENSSAUG00010023104	FKBP14 (ENSSAUG00010023105)	ENSSAUG00010023106	ENSSAUG00010023107	ENSSAUG00010023108	nfe2l3 (ENSSAUG00010023109)	cbx3a (ENSSAUG00010023110)	snx10a (ENSSAUG00010023111)
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Stickleback	MODERN SPECIES	9	pdk4 (ENSGACG00000006683)	DYNC1I1 (ENSGACG00000006745)	SLC25A13 (ENSGACG00000006755)	sem1 (ENSGACG00000006767)	dlx6a (ENSGACG00000006780)	dlx5a (ENSGACG00000006792)	ago2 (ENSGACG00000006796)	ENSGACG00000006849	npy (ENSGACG00000006863)	fam221a (ENSGACG00000006870)	ENSGACG00000006875	tra2a (ENSGACG00000006878)	igf2bp3 (ENSGACG00000006894)	GPNMB (ENSGACG00000006942)	ENSGACG00000006954	satb1a (ENSGACG00000006960) ##22	tbc1d5 (ENSGACG00000006967)	ENSGACG00000006988	ENSGACG00000006993	dazl (ENSGACG00000007001) ##24	ENSGACG00000007006 ##26	oxnad1 (ENSGACG00000007010)	ENSGACG00000007024	ENSGACG00000007025	FKBP14 (ENSGACG00000007031)	ENSGACG00000007049	cycsb (ENSGACG00000007058)	nfe2l3 (ENSGACG00000007066)	cbx3a (ENSGACG00000007069)	snx10a (ENSGACG00000007074)	hoxa1a (ENSGACG00000007085)
Lumpfish	MODERN SPECIES	2	DYNC1I1 (ENSCLMG00005014598)	SLC25A13 (ENSCLMG00005014599)	sem1 (ENSCLMG00005014602)	dlx6a (ENSCLMG00005014606)	dlx5a (ENSCLMG00005014609)	ago2 (ENSCLMG00005014637)	ENSCLMG00005018744	npy (ENSCLMG00005019264)	fam221a (ENSCLMG00005019265)	ccdc126 (ENSCLMG00005019266)	tra2a (ENSCLMG00005019267)	igf2bp3 (ENSCLMG00005019273)	GPNMB (ENSCLMG00005019275)	ENSCLMG00005019312	ENSCLMG00005019314	ENSCLMG00005019330 ##22	tbc1d5 (ENSCLMG00005019337)	ENSCLMG00005020074	ENSCLMG00005020080	ENSCLMG00005020085	dazl (ENSCLMG00005020089) ##24	ENSCLMG00005020090 ##26	oxnad1 (ENSCLMG00005020091)	ENSCLMG00005020092	ENSCLMG00005020096	FKBP14 (ENSCLMG00005020097)	ENSCLMG00005020100	ENSCLMG00005020101	ENSCLMG00005020102	nfe2l3 (ENSCLMG00005020103)	cbx3a (ENSCLMG00005020104)
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000156032.`b.b.b	ENSGT00940000159344	ENSGT00940000162732	ENSGT00940000157683	ENSGT00940000159188	ENSGT00940000155239	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00940000160808	ENSGT00940000156869	ENSGT00390000008096.C.b ##22	ENSGT00940000157121	ENSGT00940000155660.a	ENSGT00940000154959	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00760000119737	ENSGT00940000160267	ENSGT00940000157858.j	ENSGT00940000157248.c.b	ENSGT01030000234992	ENSGT00950000182892.a.b.b	ENSGT00940000153305	ENSGT00940000156007.k	ENSGT00940000157315
Pike perch	MODERN SPECIES	41	DYNC1I1 (ENSSLUG00000011368)	SLC25A13 (ENSSLUG00000007357)	sem1 (ENSSLUG00000007162)	dlx6a (ENSSLUG00000007158)	dlx5a (ENSSLUG00000007147)	ago2 (ENSSLUG00000002830)	ENSSLUG00000002011	npy (ENSSLUG00000001901)	fam221a (ENSSLUG00000001895)	ccdc126 (ENSSLUG00000001888)	tra2a (ENSSLUG00000001878)	igf2bp3 (ENSSLUG00000001733)	GPNMB (ENSSLUG00000001528)	ENSSLUG00000001516	KCNH8 (ENSSLUG00000001500)	satb1a (ENSSLUG00000014957) ##22	tbc1d5 (ENSSLUG00000014419)	ENSSLUG00000014304	DNAH3 (ENSSLUG00000011601)	dazl (ENSSLUG00000011304) ##24	ENSSLUG00000011298 ##26	oxnad1 (ENSSLUG00000011292)	ENSSLUG00000011290	ENSSLUG00000011287	FKBP14 (ENSSLUG00000011283)	COLQ (ENSSLUG00000011276)	ENSSLUG00000011273	ENSSLUG00000011269	nfe2l3 (ENSSLUG00000011266)	cbx3a (ENSSLUG00000011259)	snx10a (ENSSLUG00000011232)
Channel bull blenny	MODERN SPECIES	2	DYNC1I1 (ENSCGOG00000012026)	SLC25A13 (ENSCGOG00000011972)	sem1 (ENSCGOG00000011968)	dlx6a (ENSCGOG00000011960)	dlx5a (ENSCGOG00000011958)	ago2 (ENSCGOG00000005879)	ENSCGOG00000005229	npy (ENSCGOG00000005190)	fam221a (ENSCGOG00000005188)	ccdc126 (ENSCGOG00000005187)	tra2a (ENSCGOG00000005185)	igf2bp3 (ENSCGOG00000004521)	GPNMB (ENSCGOG00000004479)	GALNT15 (ENSCGOG00000004405)	KCNH8 (ENSCGOG00000004375)	ENSCGOG00000004373 ##22	tbc1d5 (ENSCGOG00000002723)	ENSCGOG00000002550	ENSCGOG00000002526	ENSCGOG00000002521	ENSCGOG00000002519	ENSCGOG00000002511	dazl (ENSCGOG00000002506) ##24	ENSCGOG00000002503	ENSCGOG00000002501 ##26	oxnad1 (ENSCGOG00000002500)	ENSCGOG00000002497	ENSCGOG00000002489	FKBP14 (ENSCGOG00000002494)	COLQ (ENSCGOG00000002481)	ENSCGOG00000002478
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	8	ENSGT00390000001883	ENSGT00940000178392	ENSGT00390000009677.p	ENSGT00940000154222.d.b.j	ENSGT00940000161037	ENSGT00940000156196.a	ENSGT00940000155168.a.a	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.c.a	ENSGT00940000174959	ENSGT00390000004145.a #17	ENSGT00940000154337.c.b	ENSGT00530000063528.A.b	ENSGT00940000176137	ENSGT00390000008096.C.c ##22	ENSGT00940000155660.b.d	ENSGT00940000156439.d	ENSGT00530000063609.b.w ##26	ENSGT00390000009313	ENSGT00390000015035	ENSGT00390000007287	ENSGT00940000156475.e	ENSGT00940000155880.e	ENSGT00940000155957.a	ENSGT00390000015236	ENSGT00940000165630	ENSGT00940000166701	ENSGT00940000156007.l	ENSGT00390000017856.a	ENSGT00940000155029.c.a.d
Asian bonytongue	MODERN SPECIES	9	ENSSFOG00015020856	ENSSFOG00015020875	EEPD1 (ENSSFOG00015032854)	septin7a (ENSSFOG00015020915)	NEK10 (ENSSFOG00015020979)	ENSSFOG00015021051	ENSSFOG00015030434	nr1d2a (ENSSFOG00015025313)	UBE2E1 (ENSSFOG00015032299)	ENSSFOG00015029424	ube2e2 (ENSSFOG00015021089)	ZNF385D (ENSSFOG00015021104)	rab5ab (ENSSFOG00015021115)	ENSSFOG00015021127	si:dkey-82o10.4 (ENSSFOG00015021137) #17	ENSSFOG00015021157 ##22	ENSSFOG00015021245	PLCL2 (ENSSFOG00015021254)	ENSSFOG00015030436	ENSSFOG00015021282 ##26	VMO1 (ENSSFOG00015021325)	malsu1 (ENSSFOG00015027288)	STK31 (ENSSFOG00015021341)	NPY (ENSSFOG00015021370)	ENSSFOG00015021387	gsdmeb (ENSSFOG00015021418)	OSBPL3 (ENSSFOG00015021460)	ENSSFOG00015021552	ENSSFOG00015021567	cbx3b (ENSSFOG00015021577)	snx10b (ENSSFOG00015026293)
P. kingsleyae	MODERN SPECIES	69	mios (ENSPKIG00000011000)	ENSPKIG00000010958	ENSPKIG00000010938	EEPD1 (ENSPKIG00000010923)	septin7a (ENSPKIG00000010878)	NEK10 (ENSPKIG00000010756)	ENSPKIG00000010626	ENSPKIG00000010516	nr1d2a (ENSPKIG00000010446)	ube2e2 (ENSPKIG00000010402)	ENSPKIG00000010386	ZNF385D (ENSPKIG00000010343)	ENSPKIG00000010291	efhb (ENSPKIG00000010264)	ENSPKIG00000010239	ENSPKIG00000010191 ##22	PLCL2 (ENSPKIG00000010139)	ENSPKIG00000010105	ENSPKIG00000010052 ##26	ENSPKIG00000010013	malsu1 (ENSPKIG00000009997)	STK31 (ENSPKIG00000009950)	NPY (ENSPKIG00000009927)	ENSPKIG00000009856	gsdmeb (ENSPKIG00000009804)	OSBPL3 (ENSPKIG00000009683)	ENSPKIG00000009627	ENSPKIG00000009559	cbx3b (ENSPKIG00000009516)	snx10b (ENSPKIG00000009486)	hoxa2b (ENSPKIG00000009468)
Osteoglossiformes	ANCESTRAL SPECIES	9	ENSGT00390000006540	ENSGT00940000157921	ENSGT00940000156196.b	ENSGT00940000156809.b	ENSGT00940000155168.a.b	ENSGT00940000171014	ENSGT00910000144184	ENSGT00940000159705	ENSGT00940000156415	ENSGT00940000165550.a.a	ENSGT00940000160242.b	ENSGT00940000154107.b #14	ENSGT00940000154995	ENSGT00940000154337.d	ENSGT00940000156869	ENSGT00390000008096.C.d ##22	ENSGT00940000157121	ENSGT00940000155660.b.c	ENSGT00530000063480.b ##24	ENSGT00530000063609.b.x ##26	ENSGT00390000004280	ENSGT00940000160808	ENSGT00950000183188.B	ENSGT00940000154957.B	ENSGT00940000157167	ENSGT00940000153470.a.a.a.b	ENSGT00770000120611.B	ENSGT00940000156475.f	ENSGT00940000155348.A	ENSGT00940000155880.f	ENSGT00940000155957.b
Asian bonytongue	MODERN SPECIES	15	OXSM (ENSSFOG00015015042)	ngly1 (ENSSFOG00015015019)	top2b (ENSSFOG00015014944)	RARB (ENSSFOG00015014915)	thrb (ENSSFOG00015026437)	nr1d2b (ENSSFOG00015014807)	rpl15 (ENSSFOG00015030914)	ENSSFOG00015014798	nkiras1 (ENSSFOG00015014781)	ENSSFOG00015014592	ENSSFOG00015014622	ENSSFOG00015014573 #14	kat2b (ENSSFOG00015014534)	RAB5A (ENSSFOG00015029671)	KCNH8 (ENSSFOG00015014501)	ENSSFOG00015014430 ##22	tbc1d5 (ENSSFOG00015014297)	PLCL2 (ENSSFOG00015014254)	dazl (ENSSFOG00015014199) ##24	ENSSFOG00015014187 ##26	ENSSFOG00015032544 ##26	oxnad1 (ENSSFOG00015014178)	GALNT15 (ENSSFOG00015014164)	GPNMB (ENSSFOG00015014141)	igf2bp3 (ENSSFOG00015027213)	tra2a (ENSSFOG00015014004)	ENSSFOG00015014036	ccdc126 (ENSSFOG00015013990)	fam221a (ENSSFOG00015013956)	npy (ENSSFOG00015013942)	ENSSFOG00015013869
P. kingsleyae	MODERN SPECIES	95	ngly1 (ENSPKIG00000010026)	ENSPKIG00000010011	RARB (ENSPKIG00000009963)	thrb (ENSPKIG00000009906)	nr1d2b (ENSPKIG00000009878)	ENSPKIG00000009867	rpl15 (ENSPKIG00000009854)	nkiras1 (ENSPKIG00000009837)	UBE2E1 (ENSPKIG00000009822)	ENSPKIG00000009790	ZNF385D (ENSPKIG00000009689)	ENSPKIG00000009664 #14	kat2b (ENSPKIG00000009612)	rab5ab (ENSPKIG00000009578)	KCNH8 (ENSPKIG00000009502)	ENSPKIG00000009394 ##22	ENSPKIG00000009338	tbc1d5 (ENSPKIG00000009255)	PLCL2 (ENSPKIG00000009187)	ENSPKIG00000009153 ##24
Spotted gar	MODERN SPECIES	649	ENSLOCG00000006874	thrb (ENSLOCG00000006846)	nr1d2b (ENSLOCG00000006818)	rpl15 (ENSLOCG00000006808)	nkiras1 (ENSLOCG00000006787)	UBE2E1 (ENSLOCG00000006775)	UBE2E2 (ENSLOCG00000006730)	ENSLOCG00000006712	ENSLOCG00000006695	ENSLOCG00000006661 #14	kat2b (ENSLOCG00000006617)	PP2D1 (ENSLOCG00000006606)	rab5ab (ENSLOCG00000006591)	efhb (ENSLOCG00000006567)	KCNH8 (ENSLOCG00000006545)	satb1a (ENSLOCG00000006524) ##22	tbc1d5 (ENSLOCG00000006501)	PLCL2 (ENSLOCG00000006475)	dazl (ENSLOCG00000006452) ##24	RFTN1 (ENSLOCG00000006436) ##26	oxnad1 (ENSLOCG00000006425)	ints8 (ENSLOCG00000006404)	ccne2 (ENSLOCG00000006388)	tp53inp1 (ENSLOCG00000006359)	nagpa (ENSLOCG00000006341)	ENSLOCG00000006333	ENSLOCG00000006314	ENSLOCG00000006294	ENSLOCG00000006274	rbm24b (ENSLOCG00000006244)	CHN2 (ENSLOCG00000006208)
Reedfish	MODERN SPECIES	4	nr1d2b (ENSECRG00000018140)	rpl15 (ENSECRG00000018179)	ENSECRG00000018203	nkiras1 (ENSECRG00000018221)	UBE2E1 (ENSECRG00000018245)	ENSECRG00000018320	UBE2E2 (ENSECRG00000018668)	ZNF385D (ENSECRG00000018686)	ENSECRG00000018715 #14	kat2b (ENSECRG00000018781)	ddx21 (ENSECRG00000019058)	PP2D1 (ENSECRG00000020433)	rab5ab (ENSECRG00000020444)	ENSECRG00000020467	KCNH8 (ENSECRG00000020514)	satb1a (ENSECRG00000020534) ##22	tbc1d5 (ENSECRG00000020562)	PLCL2 (ENSECRG00000020617)	dazl (ENSECRG00000020678) ##24	RFTN1 (ENSECRG00000020704) ##26	oxnad1 (ENSECRG00000020731)	ENSECRG00000020745	GALNT15 (ENSECRG00000020760)	ENSECRG00000020785	ANKRD28 (ENSECRG00000020828)	btd (ENSECRG00000020919)	hacl1 (ENSECRG00000020942)	COLQ (ENSECRG00000020973)	plekha8 (ENSECRG00000021010)	fkbp14 (ENSECRG00000021041)	SCRN1 (ENSECRG00000021054)