Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.y.b #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929.b #36
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.p ##11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.y.b.a.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929.b #36
Mouse	MODERN SPECIES		Orc2 (ENSMUSG00000026037) #7	Nif3l1 (ENSMUSG00000026036) #8	Ppil3 (ENSMUSG00000026035) #9	Clk1 (ENSMUSG00000026034) #10	Bzw1 (ENSMUSG00000051223) #11	Aox2 (ENSMUSG00000079554) #12	Aox4 (ENSMUSG00000038242) #13	Aox3 (ENSMUSG00000064294) #14	Aox1 (ENSMUSG00000063558) #15	Sgo2a (ENSMUSG00000026039) #16	Kctd18 (ENSMUSG00000054770) #17	Spats2l (ENSMUSG00000038305) #18	Maip1 (ENSMUSG00000025971) #19	Tyw5 (ENSMUSG00000048495) #20	1700066M21Rik (ENSMUSG00000038323) #21	Satb2 (ENSMUSG00000038331) #22	Hsfy2 (ENSMUSG00000045336) #23	Plcl1 (ENSMUSG00000038349) #24	Boll (ENSMUSG00000025977) #25	Mars2 (ENSMUSG00000046994) #26	Rftn2 (ENSMUSG00000025978) #27	Mob4 (ENSMUSG00000025979) #28	Hspe1 (ENSMUSG00000073676) #29	Hspd1 (ENSMUSG00000025980) #30	Coq10b (ENSMUSG00000025981) #31	Sf3b1 (ENSMUSG00000025982) #32	Ankrd44 (ENSMUSG00000052331) #33	Pgap1 (ENSMUSG00000073678) #34	Gm34066 (ENSMUSG00000109809) #35	Gtf3c3 (ENSMUSG00000041303) #36	Ccdc150 (ENSMUSG00000025983) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.p ##11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.y.b.a.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929.b #36	ENSGT00390000005285 #37
spretus	MODERN SPECIES		Hycc2 (MGP_SPRETEiJ_G0014973)	Orc2 (MGP_SPRETEiJ_G0014972) #7	Nif3l1 (MGP_SPRETEiJ_G0014971) #8	Ppil3 (MGP_SPRETEiJ_G0014970) #9	Clk1 (MGP_SPRETEiJ_G0014969) #10	Bzw1 (MGP_SPRETEiJ_G0014968) ##11	Aox2 (MGP_SPRETEiJ_G0014967) #12	Aox4 (MGP_SPRETEiJ_G0014966) #13	Aox3 (MGP_SPRETEiJ_G0014965) #13	Aox1 (MGP_SPRETEiJ_G0014964) #15	Sgo2a (MGP_SPRETEiJ_G0014963) #16	Kctd18 (MGP_SPRETEiJ_G0014962) #17	Spats2l (MGP_SPRETEiJ_G0014961) #18	Maip1 (MGP_SPRETEiJ_G0014960) #19	Tyw5 (MGP_SPRETEiJ_G0014959) #20	Satb2 (MGP_SPRETEiJ_G0014957) #22	Hsfy2 (MGP_SPRETEiJ_G0014956) #23	Plcl1 (MGP_SPRETEiJ_G0014955) #24	MGP_SPRETEiJ_G0014954 #25	Mars2 (MGP_SPRETEiJ_G0014953) #26	Rftn2 (MGP_SPRETEiJ_G0014952) #27	Mob4 (MGP_SPRETEiJ_G0014951) #28	MGP_SPRETEiJ_G0014950 ##29	MGP_SPRETEiJ_G0014949 #30	MGP_SPRETEiJ_G0014948 #31	Sf3b1 (MGP_SPRETEiJ_G0014947) #32	Ankrd44 (MGP_SPRETEiJ_G0014946) #33	MGP_SPRETEiJ_G0014945 #34	Gtf3c3 (MGP_SPRETEiJ_G0014944) #36	Ccdc150 (MGP_SPRETEiJ_G0014943) #37	Hecw2 (MGP_SPRETEiJ_G0014942)
Steppe mouse	MODERN SPECIES	84													Maip1 (ENSMSIG00000012877) #19	Tyw5 (ENSMSIG00000012899) #20	1700066M21Rik (ENSMSIG00000012910) #21	Satb2 (ENSMSIG00000012940) #22	Hsfy2 (ENSMSIG00000013021) #23
Ryukyu mouse	MODERN SPECIES		Nif3l1 (MGP_CAROLIEiJ_G0014165) #8	Ppil3 (MGP_CAROLIEiJ_G0014164) #9	Clk1 (MGP_CAROLIEiJ_G0014163) #10	Bzw1 (MGP_CAROLIEiJ_G0014162) #11	Aox2 (MGP_CAROLIEiJ_G0014161) #12	Aox4 (MGP_CAROLIEiJ_G0014160) #13	Aox3 (MGP_CAROLIEiJ_G0014159) #13	Aox1 (MGP_CAROLIEiJ_G0014158) #15	MGP_CAROLIEiJ_G0014157 #16	MGP_CAROLIEiJ_G0014156 #16	Kctd18 (MGP_CAROLIEiJ_G0014155) #17	Spats2l (MGP_CAROLIEiJ_G0014154) #18	Maip1 (MGP_CAROLIEiJ_G0014153) #19	Tyw5 (MGP_CAROLIEiJ_G0014152) #20	1700066M21Rik (MGP_CAROLIEiJ_G0014151) #21	Satb2 (MGP_CAROLIEiJ_G0014150) #22	Hsfy2 (MGP_CAROLIEiJ_G0014149) #23	Plcl1 (MGP_CAROLIEiJ_G0014148) #24	Mars2 (MGP_CAROLIEiJ_G0014147) #26	Rftn2 (MGP_CAROLIEiJ_G0014146) #27	Mob4 (MGP_CAROLIEiJ_G0014145) #28	MGP_CAROLIEiJ_G0014144 ##29	Hspd1 (MGP_CAROLIEiJ_G0014143) #30	Coq10b (MGP_CAROLIEiJ_G0014142) #31	Sf3b1 (MGP_CAROLIEiJ_G0014141) #32	Ankrd44 (MGP_CAROLIEiJ_G0014140) #33	Pgap1 (MGP_CAROLIEiJ_G0014139) #34	MGP_CAROLIEiJ_G0014138 ##36	Ccdc150 (MGP_CAROLIEiJ_G0014137) #37	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)