Mammalia	ANCESTRAL SPECIES	6	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.b ##29	ENSGT00390000005727.a.b #30	ENSGT00940000167249	ENSGT00390000006350.m.a #29	ENSGT00390000005727.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35
Theria	ANCESTRAL SPECIES	5	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.b ##29	ENSGT00390000005727.a.b #30	ENSGT00940000167249	ENSGT00390000006350.m.a #29	ENSGT00390000005727.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Eutheria	ANCESTRAL SPECIES	10	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.b ##29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.b.a.b ##29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.b.b ##29	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.b ##29	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Glires	ANCESTRAL SPECIES	14	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Murinae	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Mus	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.y.b #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929.b #36
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.p ##11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.y.b.a.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929.b #36
Mouse	MODERN SPECIES		Orc2 (ENSMUSG00000026037) #7	Nif3l1 (ENSMUSG00000026036) #8	Ppil3 (ENSMUSG00000026035) #9	Clk1 (ENSMUSG00000026034) #10	Bzw1 (ENSMUSG00000051223) #11	Aox2 (ENSMUSG00000079554) #12	Aox4 (ENSMUSG00000038242) #13	Aox3 (ENSMUSG00000064294) #14	Aox1 (ENSMUSG00000063558) #15	Sgo2a (ENSMUSG00000026039) #16	Kctd18 (ENSMUSG00000054770) #17	Spats2l (ENSMUSG00000038305) #18	Maip1 (ENSMUSG00000025971) #19	Tyw5 (ENSMUSG00000048495) #20	1700066M21Rik (ENSMUSG00000038323) #21	Satb2 (ENSMUSG00000038331) #22	Hsfy2 (ENSMUSG00000045336) #23	Plcl1 (ENSMUSG00000038349) #24	Boll (ENSMUSG00000025977) #25	Mars2 (ENSMUSG00000046994) #26	Rftn2 (ENSMUSG00000025978) #27	Mob4 (ENSMUSG00000025979) #28	Hspe1 (ENSMUSG00000073676) #29	Hspd1 (ENSMUSG00000025980) #30	Coq10b (ENSMUSG00000025981) #31	Sf3b1 (ENSMUSG00000025982) #32	Ankrd44 (ENSMUSG00000052331) #33	Pgap1 (ENSMUSG00000073678) #34	Gm34066 (ENSMUSG00000109809) #35	Gtf3c3 (ENSMUSG00000041303) #36	Ccdc150 (ENSMUSG00000025983) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.p ##11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b.m.a #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.y.b.a.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929.b #36	ENSGT00390000005285 #37
spretus	MODERN SPECIES		Hycc2 (MGP_SPRETEiJ_G0014973)	Orc2 (MGP_SPRETEiJ_G0014972) #7	Nif3l1 (MGP_SPRETEiJ_G0014971) #8	Ppil3 (MGP_SPRETEiJ_G0014970) #9	Clk1 (MGP_SPRETEiJ_G0014969) #10	Bzw1 (MGP_SPRETEiJ_G0014968) ##11	Aox2 (MGP_SPRETEiJ_G0014967) #12	Aox4 (MGP_SPRETEiJ_G0014966) #13	Aox3 (MGP_SPRETEiJ_G0014965) #13	Aox1 (MGP_SPRETEiJ_G0014964) #15	Sgo2a (MGP_SPRETEiJ_G0014963) #16	Kctd18 (MGP_SPRETEiJ_G0014962) #17	Spats2l (MGP_SPRETEiJ_G0014961) #18	Maip1 (MGP_SPRETEiJ_G0014960) #19	Tyw5 (MGP_SPRETEiJ_G0014959) #20	Satb2 (MGP_SPRETEiJ_G0014957) #22	Hsfy2 (MGP_SPRETEiJ_G0014956) #23	Plcl1 (MGP_SPRETEiJ_G0014955) #24	MGP_SPRETEiJ_G0014954 #25	Mars2 (MGP_SPRETEiJ_G0014953) #26	Rftn2 (MGP_SPRETEiJ_G0014952) #27	Mob4 (MGP_SPRETEiJ_G0014951) #28	MGP_SPRETEiJ_G0014950 ##29	MGP_SPRETEiJ_G0014949 #30	MGP_SPRETEiJ_G0014948 #31	Sf3b1 (MGP_SPRETEiJ_G0014947) #32	Ankrd44 (MGP_SPRETEiJ_G0014946) #33	MGP_SPRETEiJ_G0014945 #34	Gtf3c3 (MGP_SPRETEiJ_G0014944) #36	Ccdc150 (MGP_SPRETEiJ_G0014943) #37	Hecw2 (MGP_SPRETEiJ_G0014942)
Steppe mouse	MODERN SPECIES	84													Maip1 (ENSMSIG00000012877) #19	Tyw5 (ENSMSIG00000012899) #20	1700066M21Rik (ENSMSIG00000012910) #21	Satb2 (ENSMSIG00000012940) #22	Hsfy2 (ENSMSIG00000013021) #23
Ryukyu mouse	MODERN SPECIES		Nif3l1 (MGP_CAROLIEiJ_G0014165) #8	Ppil3 (MGP_CAROLIEiJ_G0014164) #9	Clk1 (MGP_CAROLIEiJ_G0014163) #10	Bzw1 (MGP_CAROLIEiJ_G0014162) #11	Aox2 (MGP_CAROLIEiJ_G0014161) #12	Aox4 (MGP_CAROLIEiJ_G0014160) #13	Aox3 (MGP_CAROLIEiJ_G0014159) #13	Aox1 (MGP_CAROLIEiJ_G0014158) #15	MGP_CAROLIEiJ_G0014157 #16	MGP_CAROLIEiJ_G0014156 #16	Kctd18 (MGP_CAROLIEiJ_G0014155) #17	Spats2l (MGP_CAROLIEiJ_G0014154) #18	Maip1 (MGP_CAROLIEiJ_G0014153) #19	Tyw5 (MGP_CAROLIEiJ_G0014152) #20	1700066M21Rik (MGP_CAROLIEiJ_G0014151) #21	Satb2 (MGP_CAROLIEiJ_G0014150) #22	Hsfy2 (MGP_CAROLIEiJ_G0014149) #23	Plcl1 (MGP_CAROLIEiJ_G0014148) #24	Mars2 (MGP_CAROLIEiJ_G0014147) #26	Rftn2 (MGP_CAROLIEiJ_G0014146) #27	Mob4 (MGP_CAROLIEiJ_G0014145) #28	MGP_CAROLIEiJ_G0014144 ##29	Hspd1 (MGP_CAROLIEiJ_G0014143) #30	Coq10b (MGP_CAROLIEiJ_G0014142) #31	Sf3b1 (MGP_CAROLIEiJ_G0014141) #32	Ankrd44 (MGP_CAROLIEiJ_G0014140) #33	Pgap1 (MGP_CAROLIEiJ_G0014139) #34	MGP_CAROLIEiJ_G0014138 ##36	Ccdc150 (MGP_CAROLIEiJ_G0014137) #37	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)
Shrew mouse	MODERN SPECIES	18	Hycc2 (MGP_PahariEiJ_G0027405)	Orc2 (MGP_PahariEiJ_G0027404) #7	Nif3l1 (MGP_PahariEiJ_G0027403) #8	Ppil3 (MGP_PahariEiJ_G0027402) #9	Clk1 (MGP_PahariEiJ_G0027401) #10	Bzw1 (MGP_PahariEiJ_G0027400) #11	Aox4 (MGP_PahariEiJ_G0027399) #13	Aox3 (MGP_PahariEiJ_G0027398) #13	Aox1 (MGP_PahariEiJ_G0027397) #15	Sgo2a (MGP_PahariEiJ_G0027396) #16	Kctd18 (MGP_PahariEiJ_G0027395) #17	Spats2l (MGP_PahariEiJ_G0027394) #18	Maip1 (MGP_PahariEiJ_G0027393) #19	Tyw5 (MGP_PahariEiJ_G0027392) #20	1700066M21Rik (MGP_PahariEiJ_G0027391) #21	Satb2 (MGP_PahariEiJ_G0027390) #22	Hsfy2 (MGP_PahariEiJ_G0027389) #23	Plcl1 (MGP_PahariEiJ_G0027388) #24	Boll (MGP_PahariEiJ_G0027387) #25	Mars2 (MGP_PahariEiJ_G0027386) #26	Rftn2 (MGP_PahariEiJ_G0027385) #27	MGP_PahariEiJ_G0027384 #28	MGP_PahariEiJ_G0027383 #29	MGP_PahariEiJ_G0027382 #30	Coq10b (MGP_PahariEiJ_G0027381) #31	Ankrd44 (MGP_PahariEiJ_G0027379) #33	Pgap1 (MGP_PahariEiJ_G0027378) #34	Gtf3c3 (MGP_PahariEiJ_G0027377) #36	Ccdc150 (MGP_PahariEiJ_G0027376) #37	Hecw2 (MGP_PahariEiJ_G0027375)	Stk17b (MGP_PahariEiJ_G0027374)
Rat	MODERN SPECIES	19	Orc2 (ENSRNOG00000012558) #7	Nif3l1 (ENSRNOG00000013446) #8	Ppil3 (ENSRNOG00000013636)	Clk1 (ENSRNOG00000025768) #10	Bzw1 (ENSRNOG00000013977) #11	Aox2 (ENSRNOG00000033923) #12	ENSRNOG00000068995	Aox3 (ENSRNOG00000014555) #13	Aox1 (ENSRNOG00000015354) #15	Sgo2 (ENSRNOG00000027035) #16	Kctd18 (ENSRNOG00000027091) #17	Spats2l (ENSRNOG00000016012) #18	Maip1 (ENSRNOG00000015983) #19	Tyw5 (ENSRNOG00000010100) #20	RGD1306941 (ENSRNOG00000010185) #21	Satb2 (ENSRNOG00000010188) #22	Hsfy2 (ENSRNOG00000038569) #23	Plcl1 (ENSRNOG00000032659) #24	Boll (ENSRNOG00000054379) #25	Mars2 (ENSRNOG00000065339) #26	AABR07067762.1 (ENSRNOG00000055383)	Rftn2 (ENSRNOG00000015594) #27	Mob4 (ENSRNOG00000014980) #28	Hspe1 (ENSRNOG00000051624) #29	Hspd1 (ENSRNOG00000014525) #30	Coq10b (ENSRNOG00000014456) #31	Sf3b1 (ENSRNOG00000013516) #32	Tmem258b (ENSRNOG00000032740)	Ankrd44 (ENSRNOG00000021384) #33	Pgap1 (ENSRNOG00000013388) #34	LOC686030 (ENSRNOG00000067303) #35
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b.w.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.b ##29	ENSGT00390000005727.a.b.b.w.a #30	ENSGT00390000005727.a.b.b.w.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Chinese hamster chok1gshd	MODERN SPECIES	1	Orc2 (ENSCGRG00001016911) #7	ENSCGRG00001018137 #8	Ppil3 (ENSCGRG00001021470) #9	Clk1 (ENSCGRG00001018410) #10	Bzw1 (ENSCGRG00001017178) #11	Aox2 (ENSCGRG00001017735) #12	Aox4 (ENSCGRG00001016089) #13	Aox3 (ENSCGRG00001016559) #13	Aox1 (ENSCGRG00001018485) #15	ENSCGRG00001016045 #16	Kctd18 (ENSCGRG00001016666) #17	Spats2l (ENSCGRG00001019123) #18	Maip1 (ENSCGRG00001018639) #19	Tyw5 (ENSCGRG00001015297) #20	1700066M21Rik (ENSCGRG00001016585) #21	Satb2 (ENSCGRG00001019669) #22	Hsfy2 (ENSCGRG00001009926) #23	ENSCGRG00001010393	Plcl1 (ENSCGRG00001015676) #24	ENSCGRG00001009537	Boll (ENSCGRG00001020168) #25	Mars2 (ENSCGRG00001010364) #26	Rftn2 (ENSCGRG00001017788) #27	Mob4 (ENSCGRG00001024203) #28	ENSCGRG00001015345 ##29	HSPD1 (ENSCGRG00001021126) #30	Coq10b (ENSCGRG00001015271) #31	Sf3b1 (ENSCGRG00001016990) #32	Ankrd44 (ENSCGRG00001018584) #33	Pgap1 (ENSCGRG00001016707) #34	Gtf3c3 (ENSCGRG00001014543) #36
Golden Hamster	MODERN SPECIES	723									Aox1 (ENSMAUG00000014270) #15	ENSMAUG00000000248 #16	Kctd18 (ENSMAUG00000019856) #17	Spats2l (ENSMAUG00000016921) #18	Maip1 (ENSMAUG00000007424) #19	Tyw5 (ENSMAUG00000009449) #20	1700066M21Rik (ENSMAUG00000017438) #21	Satb2 (ENSMAUG00000008545) #22	Plcl1 (ENSMAUG00000003415) #24	Boll (ENSMAUG00000008224) #25	Mars2 (ENSMAUG00000017224) #26	Rftn2 (ENSMAUG00000014348) #27	ENSMAUG00000007042 #28	ENSMAUG00000017789 #30	Coq10b (ENSMAUG00000010644) #31	Sf3b1 (ENSMAUG00000009071) #32	Ankrd44 (ENSMAUG00000019633) #33	Pgap1 (ENSMAUG00000018155) #34	Gtf3c3 (ENSMAUG00000018770) #36	Ccdc150 (ENSMAUG00000015624) #37	Hecw2 (ENSMAUG00000011882)	Stk17b (ENSMAUG00000018862)	ENSMAUG00000020218
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT00390000006350.m.a.c.a.`b #29	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.ab #29	ENSGT00390000005727.a.b.b.w.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36
Prairie vole	MODERN SPECIES	91	Hycc2 (ENSMOCG00000012367)	Orc2 (ENSMOCG00000016158) #7	Nif3l1 (ENSMOCG00000012327) #8	ENSMOCG00000013096 #9	ENSMOCG00000005608 #10	Bzw1 (ENSMOCG00000008375) #11	Aox2 (ENSMOCG00000018237) #12	Aox4 (ENSMOCG00000015766) #13	Aox1 (ENSMOCG00000001195) #15	ENSMOCG00000012099 #16	Kctd18 (ENSMOCG00000018835) #17	Spats2l (ENSMOCG00000006136) #18	Maip1 (ENSMOCG00000008182) #19	Tyw5 (ENSMOCG00000018540) #20	1700066M21Rik (ENSMOCG00000018970) #21	ENSMOCG00000005756 #22	Hsfy2 (ENSMOCG00000013974) #23	Plcl1 (ENSMOCG00000014862) #24	Boll (ENSMOCG00000022824) #25	Mars2 (ENSMOCG00000006676) #26	Rftn2 (ENSMOCG00000020060) #27	ENSMOCG00000000253 #29	Mob4 (ENSMOCG00000020652) #28	ENSMOCG00000002787 #30	Coq10b (ENSMOCG00000012636) #31	Sf3b1 (ENSMOCG00000000455) #32	ENSMOCG00000021330 #33	Pgap1 (ENSMOCG00000013936) #34	Gtf3c3 (ENSMOCG00000019654) #36	Ccdc150 (ENSMOCG00000001399) #37	Hecw2 (ENSMOCG00000012140)
Northern American deer mouse	MODERN SPECIES	4	Hycc2 (ENSPEMG00000014604)	Orc2 (ENSPEMG00000010035) #7	Nif3l1 (ENSPEMG00000023040) #8	Ppil3 (ENSPEMG00000011585) #9	Clk1 (ENSPEMG00000022508) #10	ENSPEMG00000013940 #11	Aox2 (ENSPEMG00000022861) #12	ENSPEMG00000027085 #13	Aox1 (ENSPEMG00000000656) #15	ENSPEMG00000020091 #16	Kctd18 (ENSPEMG00000028635) #17	Spats2l (ENSPEMG00000020003) #18	Maip1 (ENSPEMG00000015287) #19	Tyw5 (ENSPEMG00000009506) #20	1700066M21Rik (ENSPEMG00000001657) #21	Satb2 (ENSPEMG00000013811) #22	Hsfy2 (ENSPEMG00000029057) #23	Plcl1 (ENSPEMG00000001849) #24	ENSPEMG00000024520	Boll (ENSPEMG00000018168) #25	Mars2 (ENSPEMG00000008377) #26	Rftn2 (ENSPEMG00000000048) #27	Mob4 (ENSPEMG00000017361) #28	ENSPEMG00000029712	ENSPEMG00000010504 #29	Hspd1 (ENSPEMG00000015411) #30	Coq10b (ENSPEMG00000005817) #31	Sf3b1 (ENSPEMG00000010699) #32	Ankrd44 (ENSPEMG00000016873) #33	Pgap1 (ENSPEMG00000008939) #34	ENSPEMG00000024521
Upper Galilee mountains blind mole rat	MODERN SPECIES	417	ENSNGAG00000023509 #7	ENSNGAG00000022183 #8	Ppil3 (ENSNGAG00000014999) #9	ENSNGAG00000010384 #10	Bzw1 (ENSNGAG00000014200) #11	Aox2 (ENSNGAG00000021935) #12	Aox4 (ENSNGAG00000001220) #13	Aox3 (ENSNGAG00000019159) #13	Aox1 (ENSNGAG00000018103) #15	ENSNGAG00000017175 #16	Kctd18 (ENSNGAG00000011886) #17	Spats2l (ENSNGAG00000009131) #18	Maip1 (ENSNGAG00000013388) #19	Tyw5 (ENSNGAG00000022701) #20	1700066M21Rik (ENSNGAG00000015731) #21	Satb2 (ENSNGAG00000023604) #22	Plcl1 (ENSNGAG00000017912) #24	ENSNGAG00000014596 #25
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000013473	Clk1 (ENSJJAG00000024354) #10	Bzw1 (ENSJJAG00000022065) #11	Aox2 (ENSJJAG00000011668) #12	Aox4 (ENSJJAG00000017799) #13	Aox1 (ENSJJAG00000019598) #15	ENSJJAG00000015058 #16	Kctd18 (ENSJJAG00000016069) #17	Spats2l (ENSJJAG00000019268) #18	ENSJJAG00000010933	ENSJJAG00000012063	Maip1 (ENSJJAG00000023816) #19	Tyw5 (ENSJJAG00000019361) #20	1700066M21Rik (ENSJJAG00000019976) #21	ENSJJAG00000023987	Satb2 (ENSJJAG00000019883) #22	ENSJJAG00000012932	Plcl1 (ENSJJAG00000024297) #24	Boll (ENSJJAG00000015508) #25	Mars2 (ENSJJAG00000023940) #26	Rftn2 (ENSJJAG00000002223) #27	ENSJJAG00000009865 #28	ENSJJAG00000012025 #29	ENSJJAG00000016713 #30	Coq10b (ENSJJAG00000020646) #31	Sf3b1 (ENSJJAG00000010903) #32	ENSJJAG00000018305	Ankrd44 (ENSJJAG00000016107) #33	Pgap1 (ENSJJAG00000009924) #34	Gtf3c3 (ENSJJAG00000004649) #36	Hecw2 (ENSJJAG00000022806)
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000024018	Hycc2 (ENSDORG00000029531)	Orc2 (ENSDORG00000007391) #7	Nif3l1 (ENSDORG00000007390) #8	Ppil3 (ENSDORG00000007389) #9	Clk1 (ENSDORG00000007388) #10	Bzw1 (ENSDORG00000029865) #11	Aox2 (ENSDORG00000026718) #12	Aox4 (ENSDORG00000026668) #13	Aox3 (ENSDORG00000025305) #13	Aox1 (ENSDORG00000004358) #15	Kctd18 (ENSDORG00000007817) #17	Spats2l (ENSDORG00000007816) #18	Maip1 (ENSDORG00000012569) #19	Tyw5 (ENSDORG00000012567) #20	Satb2 (ENSDORG00000001292) #22	Plcl1 (ENSDORG00000000485) #24	Boll (ENSDORG00000010791) #25	Mars2 (ENSDORG00000010789) #26	Rftn2 (ENSDORG00000008999) #27	Mob4 (ENSDORG00000023241) #28	ENSDORG00000011071 ##29	Hspd1 (ENSDORG00000011069) ##30	Coq10b (ENSDORG00000025804) #31	Sf3b1 (ENSDORG00000002399) #32	ENSDORG00000029693 #33	ENSDORG00000024945	Pgap1 (ENSDORG00000000406) #34	Gtf3c3 (ENSDORG00000000403) #36	Hecw2 (ENSDORG00000014759)	Stk17b (ENSDORG00000029601)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00390000006350.m.a.c.b.b ##29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.v #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000012178.g.a.a	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.v #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666	ENSGT00940000155466
Marmotini_b	ANCESTRAL SPECIES	91						ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000012178.g.a.a	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a.v #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666	ENSGT00940000155466
Squirrel	MODERN SPECIES	106																SATB2 (ENSSTOG00000024964) #22	PLCL1 (ENSSTOG00000026164) #24	BOLL (ENSSTOG00000003536) #25	MARS2 (ENSSTOG00000015451) #26	RFTN2 (ENSSTOG00000015446) #27	MOB4 (ENSSTOG00000021024) #28	ENSSTOG00000031333 #29	ENSSTOG00000028470 #30	COQ10B (ENSSTOG00000011048) #31	SF3B1 (ENSSTOG00000011034) #32	ANKRD44 (ENSSTOG00000012130) #33	PGAP1 (ENSSTOG00000010633) #34	GTF3C3 (ENSSTOG00000011894) #36	ENSSTOG00000014552 #37	HECW2 (ENSSTOG00000015188)	STK17B (ENSSTOG00000020599)
Arctic ground squirrel	MODERN SPECIES	210						ENSUPAG00010015923 #13	AOX1 (ENSUPAG00010015861) #15	SGO2 (ENSUPAG00010015843) #16	KCTD18 (ENSUPAG00010015819) #17	SPATS2L (ENSUPAG00010015777) #18	MAIP1 (ENSUPAG00010015760) #19	TYW5 (ENSUPAG00010015739) #20	C2orf69 (ENSUPAG00010015730) #21	FTCDNL1 (ENSUPAG00010015721)	ENSUPAG00010015718	SATB2 (ENSUPAG00010015643) #22	PLCL1 (ENSUPAG00010015612) #24	BOLL (ENSUPAG00010015589) #25	MARS2 (ENSUPAG00010015585) #26	RFTN2 (ENSUPAG00010015580) #27	ENSUPAG00010015569 ##29	ENSUPAG00010015563 ##30	COQ10B (ENSUPAG00010015540) #31	SF3B1 (ENSUPAG00010015518) #32
Alpin marmot	MODERN SPECIES	8	PPIL3 (ENSMMMG00000012069) #9	CLK1 (ENSMMMG00000012051) #10	ENSMMMG00000012026 #11	ENSMMMG00000011976 #12	ENSMMMG00000011959	ENSMMMG00000011912 #13	AOX1 (ENSMMMG00000011886) #15	ENSMMMG00000011877 #16	KCTD18 (ENSMMMG00000011839) #17	SPATS2L (ENSMMMG00000011689) #18	MAIP1 (ENSMMMG00000011679) #19	TYW5 (ENSMMMG00000011668) #20	C2orf69 (ENSMMMG00000011660) #21	FTCDNL1 (ENSMMMG00000011655)	ENSMMMG00000011650	SATB2 (ENSMMMG00000011551) #22	ENSMMMG00000011481	PLCL1 (ENSMMMG00000011429) #24	BOLL (ENSMMMG00000011354) #25	MARS2 (ENSMMMG00000011347) #26	RFTN2 (ENSMMMG00000011220) #27	ENSMMMG00000011174 #28	ENSMMMG00000011161 #29	ENSMMMG00000011138 ##30	ENSMMMG00000011101 #31	SF3B1 (ENSMMMG00000011081) #32	ANKRD44 (ENSMMMG00000010980) #33	PGAP1 (ENSMMMG00000010912) #34	GTF3C3 (ENSMMMG00000010874) #36	ENSMMMG00000010858 #37	ENSMMMG00000010842
Eurasian red squirrel	MODERN SPECIES	12	NIF3L1 (ENSSVLG00005004091) #8	PPIL3 (ENSSVLG00005004070) #9	CLK1 (ENSSVLG00005004020) #10	BZW1 (ENSSVLG00005003945) #11	ENSSVLG00005003845 #12	ENSSVLG00005003767 #13	AOX1 (ENSSVLG00005003683) #15	SGO2 (ENSSVLG00005003633) #16	ENSSVLG00005003604 #17	SPATS2L (ENSSVLG00005003512) #18	MAIP1 (ENSSVLG00005003433) #19	TYW5 (ENSSVLG00005003405) #20	C2orf69 (ENSSVLG00005003387) #21	FTCDNL1 (ENSSVLG00005003343)	ENSSVLG00005003317	SATB2 (ENSSVLG00005003278) #22	PLCL1 (ENSSVLG00005003227) #24	ENSSVLG00005003207	BOLL (ENSSVLG00005003123) #25	MARS2 (ENSSVLG00005003085) #26	RFTN2 (ENSSVLG00005003057) #27	MOB4 (ENSSVLG00005002989) #28	HSPE1 (ENSSVLG00005002940) #29	ENSSVLG00005002895 ##30	ENSSVLG00005002862 #31	SF3B1 (ENSSVLG00005002801) #32	ANKRD44 (ENSSVLG00005002705) #33	PGAP1 (ENSSVLG00005002564) #34	C2orf66 (ENSSVLG00005002524) #35	ENSSVLG00005002519	GTF3C3 (ENSSVLG00005002487) #36
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.b.b ##29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.b.b ##29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666	ENSGT00940000155466
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.b.b.a.b ##29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466	ENSGT00940000154014.b.b
Degu	MODERN SPECIES	66	ENSODEG00000007860	ORC2 (ENSODEG00000008853) #7	NIF3L1 (ENSODEG00000008894) #8	PPIL3 (ENSODEG00000007592) #9	CLK1 (ENSODEG00000009021) #10	ENSODEG00000019563	ENSODEG00000008411 #11	ENSODEG00000008135 #12	ENSODEG00000011138 #13	AOX1 (ENSODEG00000012914) #15	ENSODEG00000009211 #17	SPATS2L (ENSODEG00000009851) #18	MAIP1 (ENSODEG00000008914) #19	TYW5 (ENSODEG00000009836) #20	C2orf69 (ENSODEG00000008700) #21	SATB2 (ENSODEG00000008383) #22	PLCL1 (ENSODEG00000008918) #24	BOLL (ENSODEG00000008471) #25	RFTN2 (ENSODEG00000008704) #27	MOB4 (ENSODEG00000009609) #28	ENSODEG00000019874	ENSODEG00000011397 ##29	ENSODEG00000009026 ##30	COQ10B (ENSODEG00000008396) #31	ENSODEG00000011153 #32	ENSODEG00000019820	ENSODEG00000008898 #33	ENSODEG00000008698	ENSODEG00000009525	PGAP1 (ENSODEG00000009932) #34	ENSODEG00000009843 #36
Long-tailed chinchilla	MODERN SPECIES	110	HYCC2 (ENSCLAG00000011177)	ORC2 (ENSCLAG00000013209) #7	NIF3L1 (ENSCLAG00000013524) #8	PPIL3 (ENSCLAG00000014050) #9	CLK1 (ENSCLAG00000011455) #10	BZW1 (ENSCLAG00000012079) #11	ENSCLAG00000011199 #12	ENSCLAG00000014402 #13	AOX1 (ENSCLAG00000011481) #15	ENSCLAG00000012456 #16	ENSCLAG00000014377 #17	SPATS2L (ENSCLAG00000013167) #18	MAIP1 (ENSCLAG00000011913) #19	TYW5 (ENSCLAG00000012009) #20	C2orf69 (ENSCLAG00000012813) #21	SATB2 (ENSCLAG00000016994) #22	PLCL1 (ENSCLAG00000016098) #24	BOLL (ENSCLAG00000017375) #25	MARS2 (ENSCLAG00000010386) #26	RFTN2 (ENSCLAG00000009821) #27	MOB4 (ENSCLAG00000010086) #28	ENSCLAG00000010686 ##29	HSPD1 (ENSCLAG00000011541) ##30	COQ10B (ENSCLAG00000017377) #31	SF3B1 (ENSCLAG00000014767) #32	ANKRD44 (ENSCLAG00000015396) #33	PGAP1 (ENSCLAG00000011838) #34	GTF3C3 (ENSCLAG00000009827) #36	CCDC150 (ENSCLAG00000012365) #37	HECW2 (ENSCLAG00000011628)	STK17B (ENSCLAG00000012520)
Guinea pig	MODERN SPECIES	104	HYCC2 (ENSCPOG00000010108)	ORC2 (ENSCPOG00000004552) #7	NIF3L1 (ENSCPOG00000008572) #8	PPIL3 (ENSCPOG00000008570) #9	CLK1 (ENSCPOG00000027067) #10	ENSCPOG00000010449 #11	ENSCPOG00000019962 #12	ENSCPOG00000033032 #13	Aox1 (ENSCPOG00000025955) #15	ENSCPOG00000002722 #16	ENSCPOG00000012077 #17	SPATS2L (ENSCPOG00000003190) #18	MAIP1 (ENSCPOG00000003800) #19	TYW5 (ENSCPOG00000035856) #20	C2orf69 (ENSCPOG00000009934) #21	SATB2 (ENSCPOG00000015198) #22	PLCL1 (ENSCPOG00000011478) #24	BOLL (ENSCPOG00000000390) #25	MARS2 (ENSCPOG00000025973) #26	RFTN2 (ENSCPOG00000010463) #27	MOB4 (ENSCPOG00000012746) #28	ENSCPOG00000027474 ##29	HSPD1 (ENSCPOG00000002588) ##30	COQ10B (ENSCPOG00000002673) #31	SF3B1 (ENSCPOG00000009353) #32	ANKRD44 (ENSCPOG00000026494) #33	PGAP1 (ENSCPOG00000003177) #34	GTF3C3 (ENSCPOG00000006643) #36	CCDC150 (ENSCPOG00000031267) #37	ENSCPOG00000040067	HECW2 (ENSCPOG00000008908)
Naked mole-rat female	MODERN SPECIES	22	PPIL3 (ENSHGLG00000035729) #9	Clk1 (ENSHGLG00000011322) #10	BZW1 (ENSHGLG00000011961) #11	ENSHGLG00000012205 #12	Aox4 (ENSHGLG00000012471) #13	AOX1 (ENSHGLG00000012876) #15	SGO2 (ENSHGLG00000015359) #16	ENSHGLG00000047532	ENSHGLG00000015370 #17	SPATS2L (ENSHGLG00000015420) #18	ENSHGLG00000017615	MAIP1 (ENSHGLG00000017548) #19	TYW5 (ENSHGLG00000017557) #20	C2orf69 (ENSHGLG00000040936) #21	ENSHGLG00000020697	SATB2 (ENSHGLG00000015892) #22	ENSHGLG00000043283	PLCL1 (ENSHGLG00000015970) #24	BOLL (ENSHGLG00000017562) #25	MARS2 (ENSHGLG00000049320) #26	RFTN2 (ENSHGLG00000017636) #27	MOB4 (ENSHGLG00000050196) #28	ENSHGLG00000042669 ##29	HSPD1 (ENSHGLG00000007927) ##30	ENSHGLG00000038699 #31	ENSHGLG00000008285 #32	ANKRD44 (ENSHGLG00000008625) #33	ENSHGLG00000049153	ENSHGLG00000040344	ENSHGLG00000008965 #34	ENSHGLG00000042696
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Rabbit	MODERN SPECIES	18	PPIL3 (ENSOCUG00000010661) #9	CLK1 (ENSOCUG00000010653) #10	ENSOCUG00000010647 #11	ENSOCUG00000026480 #12	ENSOCUG00000024593 #13	ENSOCUG00000035654 #13	AOX1 (ENSOCUG00000013971) #15	ENSOCUG00000000547 #16	ENSOCUG00000037416 #16	KCTD18 (ENSOCUG00000011556) #17	SPATS2L (ENSOCUG00000011549) #18	ENSOCUG00000017946 #19	ENSOCUG00000035705 #20	ENSOCUG00000016464 #20	C2orf69 (ENSOCUG00000016473) #21	SATB2 (ENSOCUG00000009700) #22	PLCL1 (ENSOCUG00000013978) #24	BOLL (ENSOCUG00000013979) #25	MARS2 (ENSOCUG00000017798) #26	RFTN2 (ENSOCUG00000003993) #27	ENSOCUG00000005712 #28	HSPE1 (ENSOCUG00000010360) #29	HSPD1 (ENSOCUG00000012736) ##30	COQ10B (ENSOCUG00000012735) #31	ENSOCUG00000000205	ENSOCUG00000029492 #32	ENSOCUG00000012722 #32	ANKRD44 (ENSOCUG00000009183) #33	PGAP1 (ENSOCUG00000002192) #34	C2orf66 (ENSOCUG00000028999) #35	GTF3C3 (ENSOCUG00000000463) #36
Pika	MODERN SPECIES	573													MAIP1 (ENSOPRG00000004142) #19	TYW5 (ENSOPRG00000004133) #20	C2orf69 (ENSOPRG00000004115) #21	SATB2 (ENSOPRG00000003979) #22
Tree shrew	MODERN SPECIES	795																SATB2 (ENSTBEG00000002443) #22
Primates	ANCESTRAL SPECIES	13	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.b ##29	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.a.c.a.mb #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb.a.a #29	ENSGT00390000005727.a.b.a.b.c.b.a ##30	ENSGT00390000006350.m.a.c.a.mb.b #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb.a.a #29	ENSGT00390000005727.a.b.a.b.c.b.a ##30	ENSGT00390000006350.m.a.c.a.mb.b #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb.a.a #29	ENSGT00390000006350.m.a.c.a.mb.b #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Gorilla	MODERN SPECIES	15	HYCC2 (ENSGGOG00000039554)	ORC2 (ENSGGOG00000014070) #7	NIF3L1 (ENSGGOG00000014060) #8	PPIL3 (ENSGGOG00000022268) #9	CLK1 (ENSGGOG00000016192) #10	BZW1 (ENSGGOG00000016296) #11	AOX1 (ENSGGOG00000006140) #15	SGO2 (ENSGGOG00000038921) #16	KCTD18 (ENSGGOG00000014079) #17	SPATS2L (ENSGGOG00000005917) #18	MAIP1 (ENSGGOG00000005661) #19	TYW5 (ENSGGOG00000041719) #20	C2orf69 (ENSGGOG00000005649) #21	FTCDNL1 (ENSGGOG00000040488)	ENSGGOG00000044011	SATB2 (ENSGGOG00000014123) #22	PLCL1 (ENSGGOG00000001959) #24	BOLL (ENSGGOG00000013594) #25	MARS2 (ENSGGOG00000034895) #26	RFTN2 (ENSGGOG00000009318) #27	MOB4 (ENSGGOG00000036779) ##28	HSPE1 (ENSGGOG00000027944) #29	HSPD1 (ENSGGOG00000008267) ##30	COQ10B (ENSGGOG00000039158) #31	SF3B1 (ENSGGOG00000009264) #32	ENSGGOG00000038007	ANKRD44 (ENSGGOG00000014558) #33	PGAP1 (ENSGGOG00000001785) #34	C2orf66 (ENSGGOG00000038009) #35	GTF3C3 (ENSGGOG00000011787) #36	CCDC150 (ENSGGOG00000010004) #37
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb.a.a #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Human	MODERN SPECIES	11	NDUFB3 (ENSG00000119013)	HYCC2 (ENSG00000155744)	ORC2 (ENSG00000115942) #7	NIF3L1 (ENSG00000196290) #8	PPIL3 (ENSG00000240344) #9	CLK1 (ENSG00000013441) #10	BZW1 (ENSG00000082153) #11	AOX1 (ENSG00000138356) #15	SGO2 (ENSG00000163535) #16	KCTD18 (ENSG00000155729) #17	SPATS2L (ENSG00000196141) #18	MAIP1 (ENSG00000162972) #19	TYW5 (ENSG00000162971) #20	C2orf69 (ENSG00000178074) #21	FTCDNL1 (ENSG00000226124)	SATB2 (ENSG00000119042) #22	PLCL1 (ENSG00000115896) #24	BOLL (ENSG00000152430) #25	MARS2 (ENSG00000247626) #26	RFTN2 (ENSG00000162944) #27	MOB4 (ENSG00000115540) ##28	HSPE1-MOB4 (ENSG00000270757)	HSPE1 (ENSG00000115541) #29	HSPD1 (ENSG00000144381) ##30	COQ10B (ENSG00000115520) #31	SF3B1 (ENSG00000115524) #32	ANKRD44 (ENSG00000065413) #33	PGAP1 (ENSG00000197121) #34	C2orf66 (ENSG00000187944) #35	GTF3C3 (ENSG00000119041) #36	CCDC150 (ENSG00000144395) #37
Pan	ANCESTRAL SPECIES	12	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb.a.a #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Chimpanzee	MODERN SPECIES	15	ORC2 (ENSPTRG00000012795) #7	NIF3L1 (ENSPTRG00000012794) #8	PPIL3 (ENSPTRG00000012793) #9	CLK1 (ENSPTRG00000012792) #10	BZW1 (ENSPTRG00000012791) #11	ENSPTRG00000044647 #12	AOX1 (ENSPTRG00000012790) #15	SGO2 (ENSPTRG00000022953) #16	KCTD18 (ENSPTRG00000012787) #17	SPATS2L (ENSPTRG00000012785) #18	MAIP1 (ENSPTRG00000012784) #19	TYW5 (ENSPTRG00000012783) #20	C2orf69 (ENSPTRG00000012782) #21	FTCDNL1 (ENSPTRG00000047502)	ENSPTRG00000050460	SATB2 (ENSPTRG00000012779) #22	PLCL1 (ENSPTRG00000012778) #24	BOLL (ENSPTRG00000012777) #25	MARS2 (ENSPTRG00000047853) #26	RFTN2 (ENSPTRG00000012776) #27	MOB4 (ENSPTRG00000012775) ##28	HSPE1 (ENSPTRG00000012774) #29	HSPD1 (ENSPTRG00000044665) ##30	COQ10B (ENSPTRG00000012772) #31	SF3B1 (ENSPTRG00000012771) #32	ENSPTRG00000049270	ANKRD44 (ENSPTRG00000012770) #33	PGAP1 (ENSPTRG00000012769) #34	C2BH2orf66 (ENSPTRG00000012768) #35	GTF3C3 (ENSPTRG00000012767) #36	CCDC150 (ENSPTRG00000012765) #37
Bonobo	MODERN SPECIES	15	ORC2 (ENSPPAG00000030211) #7	NIF3L1 (ENSPPAG00000043491) #8	PPIL3 (ENSPPAG00000039183) #9	CLK1 (ENSPPAG00000036957) #10	BZW1 (ENSPPAG00000027971) #11	ENSPPAG00000030893 #12	AOX1 (ENSPPAG00000000241) #15	SGO2 (ENSPPAG00000000061) #16	KCTD18 (ENSPPAG00000038865) #17	SPATS2L (ENSPPAG00000036160) #18	MAIP1 (ENSPPAG00000026692) #19	TYW5 (ENSPPAG00000027150) #20	C2orf69 (ENSPPAG00000035529) #21	FTCDNL1 (ENSPPAG00000020283)	ENSPPAG00000039843	SATB2 (ENSPPAG00000044026) #22	PLCL1 (ENSPPAG00000042453) #24	BOLL (ENSPPAG00000033757) #25	MARS2 (ENSPPAG00000007220) #26	RFTN2 (ENSPPAG00000026815) #27	MOB4 (ENSPPAG00000044023) ##28	ENSPPAG00000023895 ##29	HSPD1 (ENSPPAG00000038858) ##30	COQ10B (ENSPPAG00000010452) #31	SF3B1 (ENSPPAG00000035007) #32	ENSPPAG00000043776	ENSPPAG00000042224	ANKRD44 (ENSPPAG00000033556) #33	PGAP1 (ENSPPAG00000039254) #34	C2orf66 (ENSPPAG00000029492) #35	GTF3C3 (ENSPPAG00000002745) #36
Orangutan	MODERN SPECIES	15	NDUFB3 (ENSPPYG00000013065)	HYCC2 (ENSPPYG00000029836)	ORC2 (ENSPPYG00000013064) #7	NIF3L1 (ENSPPYG00000013063) #8	ENSPPYG00000013062	CLK1 (ENSPPYG00000013061) #10	BZW1 (ENSPPYG00000035986) #11	AOX1 (ENSPPYG00000013058) #15	SGO2 (ENSPPYG00000013057) #16	KCTD18 (ENSPPYG00000030650) #17	SPATS2L (ENSPPYG00000013055) #18	MAIP1 (ENSPPYG00000035692) #19	TYW5 (ENSPPYG00000033416) #20	C2orf69 (ENSPPYG00000013054) #21	FTCDNL1 (ENSPPYG00000033061)	SATB2 (ENSPPYG00000013052) #22	PLCL1 (ENSPPYG00000039108) #24	BOLL (ENSPPYG00000037688) #25	MARS2 (ENSPPYG00000013049) #26	ENSPPYG00000041557	RFTN2 (ENSPPYG00000013048) #27	MOB4 (ENSPPYG00000013047) ##28	HSPE1 (ENSPPYG00000025876) #29	HSPD1 (ENSPPYG00000013046) ##30	COQ10B (ENSPPYG00000039065) #31	SF3B1 (ENSPPYG00000013044) #32	ANKRD44 (ENSPPYG00000013043) #33	PGAP1 (ENSPPYG00000013042) #34	C2orf66 (ENSPPYG00000037735) #35	GTF3C3 (ENSPPYG00000013040) #36	CCDC150 (ENSPPYG00000013039) #37
Gibbon	MODERN SPECIES	14	HYCC2 (ENSNLEG00000006941)	ORC2 (ENSNLEG00000006938) #7	NIF3L1 (ENSNLEG00000006935) #8	PPIL3 (ENSNLEG00000034236) #9	CLK1 (ENSNLEG00000032526) #10	BZW1 (ENSNLEG00000006929) #11	ENSNLEG00000029066 #12	AOX1 (ENSNLEG00000006920) #15	SGO2 (ENSNLEG00000006913) #16	KCTD18 (ENSNLEG00000006912) #17	SPATS2L (ENSNLEG00000006905) #18	MAIP1 (ENSNLEG00000029234) #19	TYW5 (ENSNLEG00000031551) #20	C2orf69 (ENSNLEG00000031645) #21	FTCDNL1 (ENSNLEG00000029410)	SATB2 (ENSNLEG00000006893) #22	PLCL1 (ENSNLEG00000006890) #24	BOLL (ENSNLEG00000006885) #25	MARS2 (ENSNLEG00000018752) #26	RFTN2 (ENSNLEG00000006883) #27	MOB4 (ENSNLEG00000006881) ##28	ENSNLEG00000030370 ##29	ENSNLEG00000006874 ##30	ENSNLEG00000029205	COQ10B (ENSNLEG00000006871) #31	SF3B1 (ENSNLEG00000006861) #32	ANKRD44 (ENSNLEG00000006855) #33	PGAP1 (ENSNLEG00000006849) #34	C2orf66 (ENSNLEG00000006848) #35	GTF3C3 (ENSNLEG00000006837) #36	ENSNLEG00000006833 #37
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b ##29	ENSGT00390000006350.m.a.c.a.mb #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35
Vervet Monkey	MODERN SPECIES	1	HYCC2 (ENSCSAG00000010815)	ORC2 (ENSCSAG00000010834) #7	NIF3L1 (ENSCSAG00000010842) #8	PPIL3 (ENSCSAG00000010852) #9	CLK1 (ENSCSAG00000010924) #10	BZW1 (ENSCSAG00000010957) #11	ENSCSAG00000011187 #12	AOX1 (ENSCSAG00000011276) #15	SGO2 (ENSCSAG00000011303) #16	KCTD18 (ENSCSAG00000011318) #17	SPATS2L (ENSCSAG00000011326) #18	MAIP1 (ENSCSAG00000011334) #19	TYW5 (ENSCSAG00000011351) #20	C2orf69 (ENSCSAG00000011358) #21	FTCDNL1 (ENSCSAG00000011372)	SATB2 (ENSCSAG00000011380) #22	PLCL1 (ENSCSAG00000011391) #24	BOLL (ENSCSAG00000011399) #25	MARS2 (ENSCSAG00000018765) #26	RFTN2 (ENSCSAG00000011411) #27	MOB4 (ENSCSAG00000011421) ##28	ENSCSAG00000011427 ##29	HSPD1 (ENSCSAG00000011463) ##30	COQ10B (ENSCSAG00000011483) #31	SF3B1 (ENSCSAG00000011505) #32	ENSCSAG00000011517	ANKRD44 (ENSCSAG00000011536) #33	PGAP1 (ENSCSAG00000011561) #34	C2orf66 (ENSCSAG00000011573) #35	GTF3C3 (ENSCSAG00000011582) #36	CCDC150 (ENSCSAG00000011637) #37
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Pig-tailed macaque	MODERN SPECIES	409	NIF3L1 (ENSMNEG00000040987) #8	PPIL3 (ENSMNEG00000032202) #9	CLK1 (ENSMNEG00000031266) #10	BZW1 (ENSMNEG00000043638) #11	ENSMNEG00000045434 #12	ENSMNEG00000034841 #13	AOX1 (ENSMNEG00000024714) #15	SGO2 (ENSMNEG00000035682) #16	KCTD18 (ENSMNEG00000038609) #17	SPATS2L (ENSMNEG00000016309) #18	MAIP1 (ENSMNEG00000028494) #19	TYW5 (ENSMNEG00000030303) #20	C2orf69 (ENSMNEG00000035266) #21	FTCDNL1 (ENSMNEG00000037918)	ENSMNEG00000040066	SATB2 (ENSMNEG00000043012) #22	PLCL1 (ENSMNEG00000019208) #24	BOLL (ENSMNEG00000033015) #25	MARS2 (ENSMNEG00000019593) #26	RFTN2 (ENSMNEG00000033769) #27	ENSMNEG00000033689	MOB4 (ENSMNEG00000033188) ##28	ENSMNEG00000039279 ##29	ENSMNEG00000043358	COQ10B (ENSMNEG00000032409) #31	SF3B1 (ENSMNEG00000042333) #32	ENSMNEG00000036998	ANKRD44 (ENSMNEG00000043273) #33	ENSMNEG00000045145	PGAP1 (ENSMNEG00000033082) #34	C2orf66 (ENSMNEG00000038376) #35
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.d #28	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a.e ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35
Crab-eating macaque	MODERN SPECIES	3	HYCC2 (ENSMFAG00000032144)	ORC2 (ENSMFAG00000040620) #7	NIF3L1 (ENSMFAG00000003012) #8	PPIL3 (ENSMFAG00000038708) #9	CLK1 (ENSMFAG00000030719) #10	BZW1 (ENSMFAG00000020809) #11	ENSMFAG00000034555 #12	AOX1 (ENSMFAG00000036889) #15	SGO2 (ENSMFAG00000041855) #16	KCTD18 (ENSMFAG00000037300) #17	SPATS2L (ENSMFAG00000003450) #18	MAIP1 (ENSMFAG00000045074) #19	TYW5 (ENSMFAG00000004016) #20	C2orf69 (ENSMFAG00000032268) #21	ENSMFAG00000038094	SATB2 (ENSMFAG00000035983) #22	PLCL1 (ENSMFAG00000038838) #24	BOLL (ENSMFAG00000030962) #25	MARS2 (ENSMFAG00000012275) #26	ENSMFAG00000003051	RFTN2 (ENSMFAG00000003082) #27	ENSMFAG00000035530 ##28	ENSMFAG00000045023 ##29	ENSMFAG00000033000 ##30	COQ10B (ENSMFAG00000017910) #31	ENSMFAG00000045829	SF3B1 (ENSMFAG00000036680) #32	ENSMFAG00000057968	ENSMFAG00000057322	ANKRD44 (ENSMFAG00000032694) #33	PGAP1 (ENSMFAG00000029122) #34
Rhesus	MODERN SPECIES	3	ORC2 (ENSMMUG00000014460) #7	NIF3L1 (ENSMMUG00000006639) #8	PPIL3 (ENSMMUG00000006638)	CLK1 (ENSMMUG00000006640) #10	BZW1 (ENSMMUG00000022202) #11	AOX2 (ENSMMUG00000005835) #12	AOX4 (ENSMMUG00000047974) #13	AOX1 (ENSMMUG00000021931) #15	SGO2 (ENSMMUG00000052913) #16	KCTD18 (ENSMMUG00000008102) #17	SPATS2L (ENSMMUG00000008101) #18	MAIP1 (ENSMMUG00000023168) #19	TYW5 (ENSMMUG00000023167) #20	C12H2orf69 (ENSMMUG00000041535) #21	FTCDNL1 (ENSMMUG00000031310)	SATB2 (ENSMMUG00000046254) #22	ENSMMUG00000059853	PLCL1 (ENSMMUG00000012822) #24	BOLL (ENSMMUG00000023811) #25	MARS2 (ENSMMUG00000023810) #26	RFTN2 (ENSMMUG00000023809) #27	HSPE1 (ENSMMUG00000016547) #28	HSPD1 (ENSMMUG00000010489) ##30	COQ10B (ENSMMUG00000056418) #31	ENSMMUG00000058328	SF3B1 (ENSMMUG00000022430) #32	ANKRD44 (ENSMMUG00000022425) #33	PGAP1 (ENSMMUG00000043369) #34	C2H2orf66 (ENSMMUG00000054516) #35	GTF3C3 (ENSMMUG00000008643) #36	CCDC150 (ENSMMUG00000015970) #37
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Olive baboon	MODERN SPECIES	1	ORC2 (ENSPANG00000034347) #7	NIF3L1 (ENSPANG00000025493) #8	ENSPANG00000009683	CLK1 (ENSPANG00000015580) #10	BZW1 (ENSPANG00000016459) #11	AOX2 (ENSPANG00000016460) #12	AOX4 (ENSPANG00000024540) #13	AOX1 (ENSPANG00000015933) #15	SGO2 (ENSPANG00000021922) #16	KCTD18 (ENSPANG00000021439) #17	SPATS2L (ENSPANG00000008482) #18	TYW5 (ENSPANG00000009235) #20	C2orf69 (ENSPANG00000040521) #21	ENSPANG00000044612	ENSPANG00000031615	SATB2 (ENSPANG00000011212) #22	ENSPANG00000050725	PLCL1 (ENSPANG00000000848) #24	BOLL (ENSPANG00000009570) #25	ENSPANG00000042310	MARS2 (ENSPANG00000016544) #26	RFTN2 (ENSPANG00000009899) #27	MOB4 (ENSPANG00000016215) ##28	ENSPANG00000046137 ##29	ENSPANG00000029555 ##30	COQ10B (ENSPANG00000006879) #31	ENSPANG00000037062	SF3B1 (ENSPANG00000013417) #32	ENSPANG00000016748	ENSPANG00000037191	ENSPANG00000048684
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.b.a.b.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34
Drill	MODERN SPECIES	457	PPIL3 (ENSMLEG00000039054) #9	CLK1 (ENSMLEG00000029735) #10	BZW1 (ENSMLEG00000018894) #11	ENSMLEG00000016360 #12	ENSMLEG00000013006 #13	AOX1 (ENSMLEG00000039204) #15	SGO2 (ENSMLEG00000039520) #16	KCTD18 (ENSMLEG00000042319) #17	SPATS2L (ENSMLEG00000037145) #18	ENSMLEG00000036074	MAIP1 (ENSMLEG00000041626) #19	TYW5 (ENSMLEG00000038351) #20	C2orf69 (ENSMLEG00000015699) #21	FTCDNL1 (ENSMLEG00000042066)	ENSMLEG00000042892	SATB2 (ENSMLEG00000037435) #22	PLCL1 (ENSMLEG00000042517) #24
Sooty mangabey	MODERN SPECIES	570	NIF3L1 (ENSCATG00000030966) #8	PPIL3 (ENSCATG00000031187) #9	CLK1 (ENSCATG00000030802) #10	BZW1 (ENSCATG00000032512) #11	ENSCATG00000019918 #12	ENSCATG00000042053 #13	AOX1 (ENSCATG00000033826) #15	SGO2 (ENSCATG00000027226) #16	KCTD18 (ENSCATG00000044706) #17	SPATS2L (ENSCATG00000008807) #18	MAIP1 (ENSCATG00000036858) #19	TYW5 (ENSCATG00000033078) #20	C2orf69 (ENSCATG00000031233) #21	FTCDNL1 (ENSCATG00000018934)	ENSCATG00000044312	SATB2 (ENSCATG00000017161) #22	PLCL1 (ENSCATG00000014153) #24	BOLL (ENSCATG00000004430) #25	MARS2 (ENSCATG00000001827) #26	GLUD2 (ENSCATG00000044639)	RFTN2 (ENSCATG00000031580) #27	MOB4 (ENSCATG00000002964) ##28	ENSCATG00000022859 ##29	HSPD1 (ENSCATG00000044175) ##30	COQ10B (ENSCATG00000031857) #31	ENSCATG00000031238	SF3B1 (ENSCATG00000035735) #32	ENSCATG00000040754	ENSCATG00000039142	ANKRD44 (ENSCATG00000034086) #33	PGAP1 (ENSCATG00000041899) #34
Rhinopithecus	ANCESTRAL SPECIES	83	ENSGT00940000163579	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00950000183743	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000000950.c.b.d.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00390000000854.c.b.k.a.a.b	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a.a ##28	ENSGT00390000006350.m.a.c.a.mb #29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367.w #31	ENSGT00390000018393 #32	ENSGT00940000153941.a.a.h	ENSGT00940000157455.i.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35
Black snub-nosed monkey	MODERN SPECIES	1955												MAIP1 (ENSRBIG00000010133) #19	TYW5 (ENSRBIG00000039190) #20	C2orf69 (ENSRBIG00000038270) #21	ENSRBIG00000040998	SATB2 (ENSRBIG00000026956) #22	PLCL1 (ENSRBIG00000030591) #24
Golden snub-nosed monkey	MODERN SPECIES	676	ENSRROG00000029517	CLK1 (ENSRROG00000035273) #10	BZW1 (ENSRROG00000044305) #11	ENSRROG00000043595 #12	ENSRROG00000034026 #13	AOX1 (ENSRROG00000043118) #15	SGO2 (ENSRROG00000037302) #16	KCTD18 (ENSRROG00000043788) #17	SPATS2L (ENSRROG00000041208) #18	ENSRROG00000043858	ENSRROG00000040812 #19	TYW5 (ENSRROG00000033012) #20	C2orf69 (ENSRROG00000028208) #21	FTCDNL1 (ENSRROG00000042811)	ENSRROG00000032256	SATB2 (ENSRROG00000044735) #22
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234.c #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.b.b ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234.c #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.a.c.b.a.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234.c #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00390000006350.m.a.c.b.a.a ##29	ENSGT00390000005727.a.b.a.b.c.a.a ##30	ENSGT00940000155367 #31	ENSGT00950000183198.c.a.a.b	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Bolivian squirrel monkey	MODERN SPECIES	56	HYCC2 (ENSSBOG00000033197)	ENSSBOG00000025751 #7	NIF3L1 (ENSSBOG00000034561) #8	ENSSBOG00000028593	CLK1 (ENSSBOG00000031614) #10	BZW1 (ENSSBOG00000020710) #11	ENSSBOG00000034034 #12	AOX1 (ENSSBOG00000032424) #15	SGO2 (ENSSBOG00000035222) #16	KCTD18 (ENSSBOG00000031520) #17	SPATS2L (ENSSBOG00000031853) #18	MAIP1 (ENSSBOG00000033061) #19	TYW5 (ENSSBOG00000020625) #20	C2orf69 (ENSSBOG00000031239) #21	FTCDNL1 (ENSSBOG00000021980)	SATB2 (ENSSBOG00000028702) #22	ENSSBOG00000007950	PLCL1 (ENSSBOG00000033477) #24	BOLL (ENSSBOG00000027161) #25	MARS2 (ENSSBOG00000016226) #26	RFTN2 (ENSSBOG00000031373) #27	MOB4 (ENSSBOG00000023092) ##28	ENSSBOG00000024433	ENSSBOG00000027158 ##29	HSPD1 (ENSSBOG00000034003) ##30	COQ10B (ENSSBOG00000021591) #31	ENSSBOG00000024424	SF3B1 (ENSSBOG00000020080) #32	ANKRD44 (ENSSBOG00000020670) #33	PGAP1 (ENSSBOG00000019868) #34	C2orf66 (ENSSBOG00000021609) #35
Capuchin	MODERN SPECIES	178	FAM126B (ENSCCAG00000029565)	ORC2 (ENSCCAG00000000270) #7	NIF3L1 (ENSCCAG00000020100) #8	PPIL3 (ENSCCAG00000019393) #9	CLK1 (ENSCCAG00000021387) #10	BZW1 (ENSCCAG00000012616) #11	ENSCCAG00000028426 #12	AOX1 (ENSCCAG00000025414) #15	SGO2 (ENSCCAG00000032369) #16	KCTD18 (ENSCCAG00000023011) #17	SPATS2L (ENSCCAG00000033886) #18	MAIP1 (ENSCCAG00000012313) #19	TYW5 (ENSCCAG00000030363) #20	C2orf69 (ENSCCAG00000025235) #21	ENSCCAG00000027889	SATB2 (ENSCCAG00000028159) #22	PLCL1 (ENSCCAG00000008545) #24	BOLL (ENSCCAG00000026623) #25	MARS2 (ENSCCAG00000019937) #26	ENSCCAG00000037834	RFTN2 (ENSCCAG00000034642) #27	MOB4 (ENSCCAG00000026299) ##28	ENSCCAG00000018271 ##29	ENSCCAG00000028857 ##30
Marmoset	MODERN SPECIES	18	CLK1 (ENSCJAG00000004319) #10	BZW1 (ENSCJAG00000004267) #11	ENSCJAG00000033419 #12	AOX1 (ENSCJAG00000004230) #15	SGO2 (ENSCJAG00000004216) #16	KCTD18 (ENSCJAG00000031173) #17	ENSCJAG00000085721	SPATS2L (ENSCJAG00000004173) #18	ENSCJAG00000083755	MAIP1 (ENSCJAG00000037075) #19	TYW5 (ENSCJAG00000004155) #20	C2orf69 (ENSCJAG00000004149) #21	ENSCJAG00000044172	ENSCJAG00000078875	ENSCJAG00000082819	SATB2 (ENSCJAG00000004111) #22	ENSCJAG00000055486	ENSCJAG00000085382	PLCL1 (ENSCJAG00000004100) #24	ENSCJAG00000070051	BOLL (ENSCJAG00000004092) #25	MARS2 (ENSCJAG00000022885) #26	ENSCJAG00000077720	RFTN2 (ENSCJAG00000058836) #27	MOB4 (ENSCJAG00000045626) ##28	ENSCJAG00000084245	ENSCJAG00000041512 ##29	HSPD1 (ENSCJAG00000003990) ##30	COQ10B (ENSCJAG00000039085) #31	SF3B1 (ENSCJAG00000003902) #32	ANKRD44 (ENSCJAG00000003803) #33
Mas night monkey	MODERN SPECIES	492					CLK1 (ENSANAG00000027111) #10	BZW1 (ENSANAG00000021489) #11	ENSANAG00000023906 #12	AOX1 (ENSANAG00000025069) #15	SGO2 (ENSANAG00000030373) #16	KCTD18 (ENSANAG00000023292) #17	SPATS2L (ENSANAG00000029380) #18	MAIP1 (ENSANAG00000031625) #19	TYW5 (ENSANAG00000024108) #20	C2orf69 (ENSANAG00000022030) #21	ENSANAG00000023820	SATB2 (ENSANAG00000024206) #22	PLCL1 (ENSANAG00000022909) #24	BOLL (ENSANAG00000031449) #25	ENSANAG00000027174
Tarsier	MODERN SPECIES	4981																SATB2 (ENSTSYG00000002539) #22	LYG2 (ENSTSYG00000028650)	ENSTSYG00000029768	TXNDC9 (ENSTSYG00000033216)	EIF5B (ENSTSYG00000011850)	REV1 (ENSTSYG00000011917)	AFF3 (ENSTSYG00000029683)
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Bushbaby	MODERN SPECIES	128	HYCC2 (ENSOGAG00000012336)	ORC2 (ENSOGAG00000012329) #7	NIF3L1 (ENSOGAG00000025311) #8	PPIL3 (ENSOGAG00000007087) #9	CLK1 (ENSOGAG00000012328) #10	BZW1 (ENSOGAG00000012326) #11	AOX2 (ENSOGAG00000025249) #12	AOX4 (ENSOGAG00000030158) #13	AOX1 (ENSOGAG00000006066) #15	SGO2 (ENSOGAG00000006064) #16	KCTD18 (ENSOGAG00000012335) #17	SPATS2L (ENSOGAG00000012331) #18	MAIP1 (ENSOGAG00000006965) #19	C2orf69 (ENSOGAG00000028317) #21	ENSOGAG00000027028	SATB2 (ENSOGAG00000006949) #22
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.b ##28	ENSGT00390000006350.m.a.c.b.a.b ##29	ENSGT01050000244956.b.c.a ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35
Mouse lemur	MODERN SPECIES	30	ENSMICG00000003372 #8	PPIL3 (ENSMICG00000003367) #9	CLK1 (ENSMICG00000003361) #10	BZW1 (ENSMICG00000003355) #11	ENSMICG00000033651 #12	ENSMICG00000027664 #13	AOX1 (ENSMICG00000005718) #15	SGO2 (ENSMICG00000033463) #16	ENSMICG00000003963 #17	SPATS2L (ENSMICG00000003956) #18	MAIP1 (ENSMICG00000044985) #19	TYW5 (ENSMICG00000046098) #20	C2orf69 (ENSMICG00000035511) #21	ENSMICG00000026608	ENSMICG00000037134	SATB2 (ENSMICG00000009378) #22	PLCL1 (ENSMICG00000011854) #24	BOLL (ENSMICG00000011845) #25	RFTN2 (ENSMICG00000028117) #27	ENSMICG00000037985 ##28	HSPD1 (ENSMICG00000028600) ##30	HSPE1 (ENSMICG00000046768) #29	COQ10B (ENSMICG00000013910) #31	SF3B1 (ENSMICG00000013879) #32	ANKRD44 (ENSMICG00000013853) #33	PGAP1 (ENSMICG00000013824) #34	C2orf66 (ENSMICG00000043136) #35	GTF3C3 (ENSMICG00000013800) #36	CCDC150 (ENSMICG00000013761) #37	HECW2 (ENSMICG00000013727)	STK17B (ENSMICG00000013716)
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.c.a ##28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.a.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Coquerels sifaka	MODERN SPECIES	94	NDUFB3 (ENSPCOG00000020529)	HYCC2 (ENSPCOG00000014611)	ORC2 (ENSPCOG00000021783) #7	NIF3L1 (ENSPCOG00000018022) #8	PPIL3 (ENSPCOG00000028235) #9	CLK1 (ENSPCOG00000018180) #10	ENSPCOG00000015831 #11	ENSPCOG00000015215 #12	ENSPCOG00000027597 #13	AOX1 (ENSPCOG00000021840) #15	ENSPCOG00000024135 #16	SPATS2L (ENSPCOG00000015945) #18	MAIP1 (ENSPCOG00000008943) #19	C2orf69 (ENSPCOG00000006950) #21	FTCDNL1 (ENSPCOG00000019867)	ENSPCOG00000014379 #22
Greater bamboo lemur	MODERN SPECIES	225		MAK (ENSPSMG00000025468)	TMEM14C (ENSPSMG00000025455)	C6orf52 (ENSPSMG00000025442)	ENSPSMG00000025433	GCNT2 (ENSPSMG00000025432)	HNRNPA1L3 (ENSPSMG00000025423)	AOX1 (ENSPSMG00000025393) #15	SGO2 (ENSPSMG00000025322) #16	KCTD18 (ENSPSMG00000025316) #17	SPATS2L (ENSPSMG00000025292) #18	MAIP1 (ENSPSMG00000025245) #19	TYW5 (ENSPSMG00000025236) #20	C2orf69 (ENSPSMG00000025231) #21	FTCDNL1 (ENSPSMG00000025226)	SATB2 (ENSPSMG00000025213) #22	PLCL1 (ENSPSMG00000025179) #24	BOLL (ENSPSMG00000025166) #25	MARS2 (ENSPSMG00000025148) #26	RFTN2 (ENSPSMG00000025142) #27	ENSPSMG00000025134 ##28	ENSPSMG00000025114 ##29	ENSPSMG00000025102 ##30	COQ10B (ENSPSMG00000025082) #31	SF3B1 (ENSPSMG00000025061) #32	ANKRD44 (ENSPSMG00000025023) #33	PGAP1 (ENSPSMG00000024985) #34	GTF3C3 (ENSPSMG00000024937) #36	CCDC150 (ENSPSMG00000024921) #37	HECW2 (ENSPSMG00000024894)	STK17B (ENSPSMG00000024880)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000008096.B #22
Common shrew	MODERN SPECIES	1424																SATB2 (ENSSARG00000014343) #22
Hedgehog	MODERN SPECIES	2008																SATB2 (ENSEEUG00000014569) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Suina	ANCESTRAL SPECIES	3	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.b.a.b ##29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Pig	MODERN SPECIES	6	ORC2 (ENSSSCG00000016098) #7	NIF3L1 (ENSSSCG00000039654) #8	PPIL3 (ENSSSCG00000016096) #9	CLK1 (ENSSSCG00000016095) #10	BZW1 (ENSSSCG00000016094) #11	ENSSSCG00000016093 #12	ENSSSCG00000040051 #13	AOX1 (ENSSSCG00000029606) #15	SGO2 (ENSSSCG00000016092) #16	ENSSSCG00000016091 #17	SPATS2L (ENSSSCG00000016090) #18	MAIP1 (ENSSSCG00000036676) #19	TYW5 (ENSSSCG00000016087) #20	C2orf69 (ENSSSCG00000016086) #21	ENSSSCG00000016085	SATB2 (ENSSSCG00000021657) #22	ENSSSCG00000041534	PLCL1 (ENSSSCG00000016083) #24	ENSSSCG00000061867	BOLL (ENSSSCG00000016082) #25	MARS2 (ENSSSCG00000034494) #26	RFTN2 (ENSSSCG00000037483) #27	MOBKL3 (ENSSSCG00000016079) #28	HSPE1 (ENSSSCG00000016078) ##29	HSPD1 (ENSSSCG00000016077) #30	COQ10B (ENSSSCG00000016076) #31	ENSSSCG00000063544 #32	ENSSSCG00000016075 #32	ENSSSCG00000051570	ANKRD44 (ENSSSCG00000016074) #33	PGAP1 (ENSSSCG00000016073) #34
Chacoan peccary	MODERN SPECIES	91	ORC2 (ENSCWAG00000010595) #7	NIF3L1 (ENSCWAG00000010511) #8	PPIL3 (ENSCWAG00000010443) #9	CLK1 (ENSCWAG00000010341) #10	BZW1 (ENSCWAG00000009955) #11	ENSCWAG00000009721 #12	ENSCWAG00000009483 #13	AOX1 (ENSCWAG00000009210) #15	SGO2 (ENSCWAG00000009111) #16	KCTD18 (ENSCWAG00000009030) #17	SPATS2L (ENSCWAG00000008608) #18	MAIP1 (ENSCWAG00000008554) #19	TYW5 (ENSCWAG00000008494) #20	C2orf69 (ENSCWAG00000008457) #21	FTCDNL1 (ENSCWAG00000008365)	SATB2 (ENSCWAG00000008150) #22	PLCL1 (ENSCWAG00000007994) #24	ENSCWAG00000007948 #25
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.i.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00390000012561.b.i.a #11	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.i.b #11	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.i.b #11	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.i.b #11	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000154631.c.b	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159152.d.d	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.i.b #11	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000154631.c.b	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Beluga whale	MODERN SPECIES	84	ENSDLEG00000017782	FAM126B (ENSDLEG00000017730)	ORC2 (ENSDLEG00000017685) #7	NIF3L1 (ENSDLEG00000017669) #8	PPIL3 (ENSDLEG00000017637) #9	CLK1 (ENSDLEG00000017601) #10	ENSDLEG00000017537 #11	AOX1 (ENSDLEG00000017388) #15	SGO2 (ENSDLEG00000017351) #16	KCTD18 (ENSDLEG00000017330) #17	SPATS2L (ENSDLEG00000017277) #18	MAIP1 (ENSDLEG00000017256) #19	TYW5 (ENSDLEG00000017244) #20	CUNH2orf69 (ENSDLEG00000017234) #21	ENSDLEG00000017202	SATB2 (ENSDLEG00000017180) #22	ENSDLEG00000017147	PLCL1 (ENSDLEG00000017124) #24	ENSDLEG00000017113	ENSDLEG00000017109	BOLL (ENSDLEG00000017047) #25	MARS2 (ENSDLEG00000017031) #26	RFTN2 (ENSDLEG00000017004) #27	HSPE1 (ENSDLEG00000016991) #28	ENSDLEG00000016973 #29	HSPD1 (ENSDLEG00000016961) #30	COQ10B (ENSDLEG00000016950) #31	SF3B1 (ENSDLEG00000016863) #32	ANKRD44 (ENSDLEG00000016735) #33	PGAP1 (ENSDLEG00000016703) #34	GTF3C3 (ENSDLEG00000016677) #36
Narwhal	MODERN SPECIES	302	ENSMMNG00015008710	ORC2 (ENSMMNG00015008727) #7	NIF3L1 (ENSMMNG00015008742) #8	PPIL3 (ENSMMNG00015008752) #9	CLK1 (ENSMMNG00015008783) #10	ENSMMNG00015008840 #11	AOX1 (ENSMMNG00015008883) #15	ENSMMNG00015008917 #16	ENSMMNG00015008923 #16	KCTD18 (ENSMMNG00015008930) #17	SPATS2L (ENSMMNG00015008966) #18	MAIP1 (ENSMMNG00015009034) #19	TYW5 (ENSMMNG00015009041) #20	C2orf69 (ENSMMNG00015009051) #21	FTCDNL1 (ENSMMNG00015009064)	SATB2 (ENSMMNG00015009088) #22	ENSMMNG00015009121	PLCL1 (ENSMMNG00015009132) #24	ENSMMNG00015009146	MARS2 (ENSMMNG00015009149) #26	RFTN2 (ENSMMNG00015009156) #27	ENSMMNG00015005118	MOB4 (ENSMMNG00015005131) #28	ENSMMNG00015005152 #29	ENSMMNG00015005160 #30	COQ10B (ENSMMNG00015005170) #31	SF3B1 (ENSMMNG00015005194) #32	ANKRD44 (ENSMMNG00015005236) #33	PGAP1 (ENSMMNG00015005302) #34	C2orf66 (ENSMMNG00015005331) #35	GTF3C3 (ENSMMNG00015005350) #36
Vaquita	MODERN SPECIES	18	ENSPSNG00000017913	ENSPSNG00000017952	ORC2 (ENSPSNG00000017971) #7	NIF3L1 (ENSPSNG00000018036) #8	PPIL3 (ENSPSNG00000018105) #9	CLK1 (ENSPSNG00000018159) #10	ENSPSNG00000018409 #11	AOX1 (ENSPSNG00000018708) #15	SGO2 (ENSPSNG00000018985) #16	KCTD18 (ENSPSNG00000019019) #17	SPATS2L (ENSPSNG00000019081) #18	MAIP1 (ENSPSNG00000019254) #19	TYW5 (ENSPSNG00000019307) #20	C2orf69 (ENSPSNG00000019348) #21	ENSPSNG00000019397	SATB2 (ENSPSNG00000019498) #22	ENSPSNG00000019635	PLCL1 (ENSPSNG00000019688) #24	ENSPSNG00000019773	BOLL (ENSPSNG00000019819) #25	MARS2 (ENSPSNG00000020001) #26	RFTN2 (ENSPSNG00000020023) #27	MOB4 (ENSPSNG00000020101) #28	HSPD1 (ENSPSNG00000020243) #30	ENSPSNG00000020315 ##29	COQ10B (ENSPSNG00000020376) #31	SF3B1 (ENSPSNG00000020453) #32	ANKRD44 (ENSPSNG00000020570) #33	PGAP1 (ENSPSNG00000020691) #34	C2orf66 (ENSPSNG00000020837) #35	GTF3C3 (ENSPSNG00000002123) #36
Dolphin	MODERN SPECIES	16																SATB2 (ENSTTRG00000001254) #22
Sperm whale	MODERN SPECIES	11	ENSPCTG00005001851	FAM126B (ENSPCTG00005001830)	ORC2 (ENSPCTG00005001802) #7	NIF3L1 (ENSPCTG00005001774) #8	PPIL3 (ENSPCTG00005001749) #9	CLK1 (ENSPCTG00005001575) #10	BZW1 (ENSPCTG00005001498) #11	AOX1 (ENSPCTG00005001418) #15	SGO2 (ENSPCTG00005001385) #16	KCTD18 (ENSPCTG00005001363) #17	SPATS2L (ENSPCTG00005001213) #18	MAIP1 (ENSPCTG00005001167) #19	TYW5 (ENSPCTG00005001148) #20	C2H2orf69 (ENSPCTG00005001135) #21	ENSPCTG00005001114	SATB2 (ENSPCTG00005001020) #22	PLCL1 (ENSPCTG00005000965) #24	BOLL (ENSPCTG00005000834) #25	MARS2 (ENSPCTG00005000802) #26	RFTN2 (ENSPCTG00005000782) #27	MOB4 (ENSPCTG00005000750) #28	HSPE1 (ENSPCTG00005000700) #29	HSPD1 (ENSPCTG00005000653) #30	COQ10B (ENSPCTG00005000606) #31	SF3B1 (ENSPCTG00005000567) #32	ANKRD44 (ENSPCTG00005000458) #33	PGAP1 (ENSPCTG00005000363) #34	C2orf66 (ENSPCTG00005000282) #35	GTF3C3 (ENSPCTG00005000262) #36	ENSPCTG00005000238 #37	ENSPCTG00005000224
Blue whale	MODERN SPECIES	18	ORC2 (ENSBMSG00010003997) #7	NIF3L1 (ENSBMSG00010003954) #8	PPIL3 (ENSBMSG00010003923) #9	CLK1 (ENSBMSG00010003860) #10	ENSBMSG00010003785 #11	ENSBMSG00010003674 #12	AOX1 (ENSBMSG00010003482) #15	ENSBMSG00010003395 #16	ENSBMSG00010003382 #16	KCTD18 (ENSBMSG00010003365) #17	SPATS2L (ENSBMSG00010003251) #18	MAIP1 (ENSBMSG00010003193) #19	TYW5 (ENSBMSG00010003179) #20	C2orf69 (ENSBMSG00010003167) #21	FTCDNL1 (ENSBMSG00010003148)	SATB2 (ENSBMSG00010003076) #22	PLCL1 (ENSBMSG00010002964) #24	BOLL (ENSBMSG00010002886) #25	MARS2 (ENSBMSG00010002857) #26	RFTN2 (ENSBMSG00010002848) #27	MOB4 (ENSBMSG00010002811) #28	ENSBMSG00010002778 #29	HSPD1 (ENSBMSG00010002754) #30	COQ10B (ENSBMSG00010002718) #31	SF3B1 (ENSBMSG00010002624) #32	ENSBMSG00010002564	ANKRD44 (ENSBMSG00010002506) #33	PGAP1 (ENSBMSG00010002370) #34	C2orf66 (ENSBMSG00010002279) #35	GTF3C3 (ENSBMSG00010002241) #36	CCDC150 (ENSBMSG00010002134) #37
Pecora	ANCESTRAL SPECIES	16	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Bos	ANCESTRAL SPECIES	6	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.g #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.g #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Wild yak	MODERN SPECIES	690								AOX1 (ENSBMUG00000000894) #15	SGO2 (ENSBMUG00000000973) #16	KCTD18 (ENSBMUG00000001001) #17	SPATS2L (ENSBMUG00000001103) #18	MAIP1 (ENSBMUG00000001172) #19	TYW5 (ENSBMUG00000001180) #20	C2orf69 (ENSBMUG00000001195) #21	FTCDNL1 (ENSBMUG00000001215)	SATB2 (ENSBMUG00000001288) #22	PLCL1 (ENSBMUG00000001392) #24
Domestic yak	MODERN SPECIES	11	NIF3L1 (ENSBGRG00000022968) #8	ENSBGRG00000023065	CLK1 (ENSBGRG00000023102) #10	BZW1 (ENSBGRG00000023222) #11	ENSBGRG00000023761 #12	ENSBGRG00000026310 #13	ENSBGRG00000026671	AOX1 (ENSBGRG00000026674) #15	SGO2 (ENSBGRG00000026677) #16	KCTD18 (ENSBGRG00000026680) #17	SPATS2L (ENSBGRG00000026684) #18	MAIP1 (ENSBGRG00000026693) #19	TYW5 (ENSBGRG00000026697) #20	C2orf69 (ENSBGRG00000026703) #21	FTCDNL1 (ENSBGRG00000026708)	SATB2 (ENSBGRG00000026716) #22	ENSBGRG00000000192	PLCL1 (ENSBGRG00000000210) #24	BOLL (ENSBGRG00000000262) #25	MARS2 (ENSBGRG00000000375) #26	RFTN2 (ENSBGRG00000000406) #27	ENSBGRG00000000487 #28	HSPE1 (ENSBGRG00000000521) #29	HSPD1 (ENSBGRG00000000539) #30	COQ10B (ENSBGRG00000000566) #31	SF3B1 (ENSBGRG00000000604) #32	ANKRD44 (ENSBGRG00000000733) #33	PGAP1 (ENSBGRG00000000882) #34	C2orf66 (ENSBGRG00000001016) #35	GTF3C3 (ENSBGRG00000001029) #36	ENSBGRG00000001058
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.g #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b.a #30	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00940000162534.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Cow	MODERN SPECIES	11	PPIL3 (ENSBTAG00000005416)	CLK1 (ENSBTAG00000005408) #10	BZW1 (ENSBTAG00000006049) #11	AOX2 (ENSBTAG00000026812) #12	AOX4 (ENSBTAG00000038878) #13	ENSBTAG00000047849	AOX1 (ENSBTAG00000009725) #15	SGO2 (ENSBTAG00000031579) #16	KCTD18 (ENSBTAG00000002272) #17	SPATS2L (ENSBTAG00000016092) #18	ENSBTAG00000024003	MAIP1 (ENSBTAG00000019231) #19	TYW5 (ENSBTAG00000019232) #20	C2H2orf69 (ENSBTAG00000009952) #21	ENSBTAG00000031595	SATB2 (ENSBTAG00000016334) #22	PLCL1 (ENSBTAG00000007635) #24	BOLL (ENSBTAG00000031614) #25	MARS2 (ENSBTAG00000002056) #26	RFTN2 (ENSBTAG00000007652) #27	MOB4 (ENSBTAG00000019116) #28	HSPE1 (ENSBTAG00000012589) #29	HSPD1 (ENSBTAG00000012586) #30	COQ10B (ENSBTAG00000004659) #31	SF3B1 (ENSBTAG00000008915) #32	ENSBTAG00000012171	ANKRD44 (ENSBTAG00000031696) #33	PGAP1 (ENSBTAG00000020416) #34	GTF3C3 (ENSBTAG00000007779) #36	CCDC150 (ENSBTAG00000017695) #37	HECW2 (ENSBTAG00000020696)
Hybrid Bos Indicus	MODERN SPECIES	11	NIF3L1 (ENSBIXG00005031554) #8	PPIL3 (ENSBIXG00005031553) #9	CLK1 (ENSBIXG00005031552) #10	BZW1 (ENSBIXG00005031551) #11	ENSBIXG00005031550 #12	ENSBIXG00005030534 #13	AOX1 (ENSBIXG00005008599) #15	SGO2 (ENSBIXG00005008643) #16	KCTD18 (ENSBIXG00005005902) #17	ENSBIXG00005008660	SPATS2L (ENSBIXG00005008726) #18	MAIP1 (ENSBIXG00005008787) #19	TYW5 (ENSBIXG00005008805) #20	C2orf69 (ENSBIXG00005008818) #21	FTCDNL1 (ENSBIXG00005008837)	SATB2 (ENSBIXG00005008954) #22	PLCL1 (ENSBIXG00005009092) #24	ENSBIXG00005009140	BOLL (ENSBIXG00005009209) #25	MARS2 (ENSBIXG00005009234) #26	RFTN2 (ENSBIXG00005009241) #27	MOB4 (ENSBIXG00005009278) #28	ENSBIXG00005009301 #29	ENSBIXG00005009345 #30	COQ10B (ENSBIXG00005009394) #31	SF3B1 (ENSBIXG00005000503) #32	ENSBIXG00005009496	ANKRD44 (ENSBIXG00005009540) #33	PGAP1 (ENSBIXG00005009684) #34	C2orf66 (ENSBIXG00005009722) #35	GTF3C3 (ENSBIXG00005005945) #36
American bison	MODERN SPECIES	3330	CLK1 (ENSBBBG00000002583) #10	BZW1 (ENSBBBG00000013019) #11	ENSBBBG00000013042 #12	ENSBBBG00000013095 #13	ENSBBBG00000002631	AOX1 (ENSBBBG00000013130) #15	ENSBBBG00000013142 #16	ENSBBBG00000013146 #16	KCTD18 (ENSBBBG00000013155) #17	ENSBBBG00000013159	SPATS2L (ENSBBBG00000013236) #18	MAIP1 (ENSBBBG00000001643) #19	TYW5 (ENSBBBG00000013257) #20	C2orf69 (ENSBBBG00000002681) #21	FTCDNL1 (ENSBBBG00000008285)	SATB2 (ENSBBBG00000013343) #22	PLCL1 (ENSBBBG00000002738) #24	BOLL (ENSBBBG00000013412) #25	MARS2 (ENSBBBG00000013415) #26	RFTN2 (ENSBBBG00000002765) #27	MOB4 (ENSBBBG00000013501) #28	ENSBBBG00000013516 ##29	HSPD1 (ENSBBBG00000013534) #30	ENSBBBG00000007252 #31	ENSBBBG00000013596 #32	ENSBBBG00000013601	ANKRD44 (ENSBBBG00000013667) #33	PGAP1 (ENSBBBG00000013723) #34	C2orf66 (ENSBBBG00000013730) #35	GTF3C3 (ENSBBBG00000002934) #36	ENSBBBG00000013757 #37
Caprinae	ANCESTRAL SPECIES	5	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493.h #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b.e #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.s #31	ENSGT00940000155367.t #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Rambouillet Sheep	MODERN SPECIES	11	NIF3L1 (ENSOARG00020016593) #8	PPIL3 (ENSOARG00020016501) #9	CLK1 (ENSOARG00020016395) #10	BZW1 (ENSOARG00020015764) #11	ENSOARG00020015365 #12	ENSOARG00020015282	ENSOARG00020015070 #13	AOX1 (ENSOARG00020014833) #15	ENSOARG00020014683 #17	ENSOARG00020014668	SPATS2L (ENSOARG00020014270) #18	MAIP1 (ENSOARG00020014186) #19	TYW5 (ENSOARG00020014145) #20	C2orf69 (ENSOARG00020014115) #21	FTCDNL1 (ENSOARG00020013918)	SATB2 (ENSOARG00020013534) #22	ENSOARG00020013422	ENSOARG00020013393	ENSOARG00020013380	ENSOARG00020013353	ENSOARG00020013326	ENSOARG00020013287	BOLL (ENSOARG00020012643) #25	MARS2 (ENSOARG00020012596) #26	RFTN2 (ENSOARG00020012524) #27	ENSOARG00020012334 #28	HSP10 (ENSOARG00020012227) #29	ENSOARG00020012172 #30	COQ10B (ENSOARG00020011999) #31	SF3B1 (ENSOARG00020011806) #32	ANKRD44 (ENSOARG00020010197) #33
Goat	MODERN SPECIES	11	NIF3L1 (ENSCHIG00000009478) #8	PPIL3 (ENSCHIG00000019642) #9	CLK1 (ENSCHIG00000018314) #10	BZW1 (ENSCHIG00000019964) #11	ENSCHIG00000020570 #12	ENSCHIG00000013677 #13	ENSCHIG00000019390	AOX1 (ENSCHIG00000013439) #15	SGO2 (ENSCHIG00000013638) #16	KCTD18 (ENSCHIG00000022753) #17	SPATS2L (ENSCHIG00000026377) #18	MAIP1 (ENSCHIG00000007507) #19	ENSCHIG00000017324 #20	ENSCHIG00000011016 #21	FTCDNL1 (ENSCHIG00000022126)	SATB2 (ENSCHIG00000022376) #22	PLCL1 (ENSCHIG00000013331) #24	ENSCHIG00000011685	ENSCHIG00000021317	BOLL (ENSCHIG00000024995) #25	MARS2 (ENSCHIG00000016548) #26	RFTN2 (ENSCHIG00000012903) #27	ENSCHIG00000026973 #28	HSPE1 (ENSCHIG00000009467) #29	HSPD1 (ENSCHIG00000004382) #30	ENSCHIG00000020913 #31	SF3B1 (ENSCHIG00000015226) #32	ANKRD44 (ENSCHIG00000017665) #33	ENSCHIG00000012550	PGAP1 (ENSCHIG00000018177) #34	GTF3C3 (ENSCHIG00000016485) #36
Siberian musk deer	MODERN SPECIES	351	PPIL3 (ENSMMSG00000024329) #9	CLK1 (ENSMMSG00000024326) #10	ENSMMSG00000024321 #11	ENSMMSG00000024314 #12	ENSMMSG00000013161 #13	ENSMMSG00000012463	AOX1 (ENSMMSG00000012371) #15	SGO2 (ENSMMSG00000012334) #16	KCTD18 (ENSMMSG00000012309) #17	SPATS2L (ENSMMSG00000011944) #18	MAIP1 (ENSMMSG00000011886) #19	TYW5 (ENSMMSG00000011859) #20	C2orf69 (ENSMMSG00000011836) #21	ENSMMSG00000011819	ENSMMSG00000011780	SATB2 (ENSMMSG00000011682) #22
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000004999	BZW1 (ENSCHYG00000009251) #11	ENSCHYG00000009654 #12	ENSCHYG00000009851 #13	ENSCHYG00000010410	ENSCHYG00000010452	AOX1 (ENSCHYG00000010517) #15	SGO2 (ENSCHYG00000011236) #16	KCTD18 (ENSCHYG00000011325) #17	SPATS2L (ENSCHYG00000011390) #18	ENSCHYG00000011736	MAIP1 (ENSCHYG00000011759) #19	TYW5 (ENSCHYG00000011850) #20	C2orf69 (ENSCHYG00000011903) #21	ENSCHYG00000011965	SATB2 (ENSCHYG00000012100) #22	ENSCHYG00000012371	PLCL1 (ENSCHYG00000012427) #24	BOLL (ENSCHYG00000012765) #25	MARS2 (ENSCHYG00000013177) #26	RFTN2 (ENSCHYG00000013201) #27	MOB4 (ENSCHYG00000013303) #28	ENSCHYG00000013442 ##29	ENSCHYG00000013593 #30	ENSCHYG00000013673 #31	SF3B1 (ENSCHYG00000013853) #32	ANKRD44 (ENSCHYG00000014222) #33	PGAP1 (ENSCHYG00000015550) #34	C2orf66 (ENSCHYG00000015983) #35	GTF3C3 (ENSCHYG00000016098) #36	CCDC150 (ENSCHYG00000016506) #37
Camelidae	ANCESTRAL SPECIES	58	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000006350.m.a.c.b.a.b ##29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Arabian camel	MODERN SPECIES	31	PPIL3 (ENSCDRG00005007234) #9	CLK1 (ENSCDRG00005007272) #10	BZW1 (ENSCDRG00005008038) #11	ENSCDRG00005008482 #12	ENSCDRG00005008740 #13	AOX1 (ENSCDRG00005009121) #15	ENSCDRG00005009409 #16	ENSCDRG00005009460 #16	KCTD18 (ENSCDRG00005009496) #17	SPATS2L (ENSCDRG00005009592) #18	ENSCDRG00005010296	MAIP1 (ENSCDRG00005010319) #19	TYW5 (ENSCDRG00005010376) #20	C2orf69 (ENSCDRG00005010427) #21	FTCDNL1 (ENSCDRG00005010462)	SATB2 (ENSCDRG00005010563) #22	PLCL1 (ENSCDRG00005010932) #24	BOLL (ENSCDRG00005011111) #25	MARS2 (ENSCDRG00005011548) #26	RFTN2 (ENSCDRG00005011566) #27	MOB4 (ENSCDRG00005011619) #28	HSPE1 (ENSCDRG00005011802) #29	HSPD1 (ENSCDRG00005011897) #30	COQ10B (ENSCDRG00005012028) #31	ENSCDRG00005012185	SF3B1 (ENSCDRG00005012215) #32	ANKRD44 (ENSCDRG00005012443) #33	PGAP1 (ENSCDRG00005012687) #34	C2orf66 (ENSCDRG00005012843) #35	GTF3C3 (ENSCDRG00005012878) #36	CCDC150 (ENSCDRG00005012991) #37
Alpaca	MODERN SPECIES	63													MAIP1 (ENSVPAG00000007005) #19	TYW5 (ENSVPAG00000007004) #20	C2orf69 (ENSVPAG00000007002) #21	SATB2 (ENSVPAG00000007001) #22
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Caniformia	ANCESTRAL SPECIES	14	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.b ##29	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.f #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393.p #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.f #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01010000225408	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00940000154276.kb.a.b	ENSGT00390000004856.w.b	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393.p #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36
American black bear	MODERN SPECIES	846															ENSUAMG00000028250	SATB2 (ENSUAMG00000028249) #22
Polar bear	MODERN SPECIES	142	ORC2 (ENSUMAG00000021479) #7	PPIL3 (ENSUMAG00000021460) #9	NIF3L1 (ENSUMAG00000021455) #8	CLK1 (ENSUMAG00000021445) #10	BZW1 (ENSUMAG00000021441) #11	ENSUMAG00000021399 #12	ENSUMAG00000021134 #13	AOX1 (ENSUMAG00000021073) #15	SGO2 (ENSUMAG00000021068) #16	KCTD18 (ENSUMAG00000021066) #17	SPATS2L (ENSUMAG00000021060) #18	MAIP1 (ENSUMAG00000021043) #19	TYW5 (ENSUMAG00000021039) #20	C2orf69 (ENSUMAG00000021037) #21	FTCDNL1 (ENSUMAG00000021033)	SATB2 (ENSUMAG00000021003) #22	PLCL1 (ENSUMAG00000020984) #24	ENSUMAG00000020978	ENSUMAG00000020976	BOLL (ENSUMAG00000020969) #25	MARS2 (ENSUMAG00000020961) #26	RFTN2 (ENSUMAG00000020958) #27	MOB4 (ENSUMAG00000020955) #28	HSPE1 (ENSUMAG00000020954) #29	HSPD1 (ENSUMAG00000020952) #30	COQ10B (ENSUMAG00000020949) #31	SF3B1 (ENSUMAG00000020945) #32	ANKRD44 (ENSUMAG00000020937) #33	PGAP1 (ENSUMAG00000020815) #34	GTF3C3 (ENSUMAG00000020787) #36	CCDC150 (ENSUMAG00000020726) #37
Giant Panda	MODERN SPECIES	11	ORC2 (ENSAMEG00000005940) #7	NIF3L1 (ENSAMEG00000005921) #8	PPIL3 (ENSAMEG00000005917) #9	CLK1 (ENSAMEG00000005887) #10	BZW1 (ENSAMEG00000005859) #11	AOX2 (ENSAMEG00000005633) #12	AOX4 (ENSAMEG00000005561) #13	AOX1 (ENSAMEG00000005445) #15	SGO2 (ENSAMEG00000005435) #16	KCTD18 (ENSAMEG00000005423) #17	SPATS2L (ENSAMEG00000005405) #18	MAIP1 (ENSAMEG00000005390) #19	TYW5 (ENSAMEG00000005386) #20	C2orf69 (ENSAMEG00000005381) #21	ENSAMEG00000023460	SATB2 (ENSAMEG00000005350) #22	ENSAMEG00000019732	PLCL1 (ENSAMEG00000013707) #24	BOLL (ENSAMEG00000013712) #25	MARS2 (ENSAMEG00000019748) #26	RFTN2 (ENSAMEG00000013737) #27	MOB4 (ENSAMEG00000013751) #28	ENSAMEG00000013769 ##29	HSPD1 (ENSAMEG00000013770) #30	COQ10B (ENSAMEG00000013802) #31	SF3B1 (ENSAMEG00000013809) #32	ANKRD44 (ENSAMEG00000013836) #33	PGAP1 (ENSAMEG00000013887) #34	C2orf66 (ENSAMEG00000013924) #35	GTF3C3 (ENSAMEG00000013925) #36	CCDC150 (ENSAMEG00000013946) #37
Mustelinae	ANCESTRAL SPECIES	44	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000163579	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.b.a.a ##29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
American mink	MODERN SPECIES	40	NIF3L (ENSNVIG00000008895) #8	ENSNVIG00000008933	ENSNVIG00000008938 #10	ENSNVIG00000008952 #10	BZW1 (ENSNVIG00000008992) #11	ENSNVIG00000009087 #12	ENSNVIG00000009216 #13	AOX1 (ENSNVIG00000009846) #15	SGO2 (ENSNVIG00000009949) #16	KCTD18 (ENSNVIG00000009981) #17	SPATS2L (ENSNVIG00000010010) #18	MAIP1 (ENSNVIG00000010220) #19	TYW5 (ENSNVIG00000010238) #20	C2orf69 (ENSNVIG00000010249) #21	ENSNVIG00000010260	SATB2 (ENSNVIG00000010289) #22	PLCL1 (ENSNVIG00000010416) #24	ENSNVIG00000010433	BOLL (ENSNVIG00000010444) #25	MARS2 (ENSNVIG00000010510) #26	RFTN2 (ENSNVIG00000010521) #27	PHOCN (ENSNVIG00000010530) #28	ENSNVIG00000010568 ##29	ENSNVIG00000010575 #30	COQ10B (ENSNVIG00000010606) #31	SF3B1 (ENSNVIG00000010631) #32	ANKRD44 (ENSNVIG00000010686) #33	PGAP1 (ENSNVIG00000010723) #34	C2orf66 (ENSNVIG00000010821) #35	GTF3C3 (ENSNVIG00000010824) #36	CCDC150 (ENSNVIG00000010849) #37
Ferret	MODERN SPECIES	333									SGO2 (ENSMPUG00000008053) #16	KCTD18 (ENSMPUG00000008044) #17	SPATS2L (ENSMPUG00000008030) #18	MAIP1 (ENSMPUG00000008001) #19	TYW5 (ENSMPUG00000007993) #20	C2orf69 (ENSMPUG00000007987) #21	ENSMPUG00000007983	SATB2 (ENSMPUG00000007972) #22	PLCL1 (ENSMPUG00000007965) #24	BOLL (ENSMPUG00000007922) #25	MARS2 (ENSMPUG00000019823) #26	ENSMPUG00000019822	RFTN2 (ENSMPUG00000007918) #27	MOB4 (ENSMPUG00000007910) #28	ENSMPUG00000007818 #30	COQ10B (ENSMPUG00000007810) #31	SF3B1 (ENSMPUG00000007799) #32	ANKRD44 (ENSMPUG00000007785) #33	PGAP1 (ENSMPUG00000007770) #34	GTF3C3 (ENSMPUG00000007764) #36	CCDC150 (ENSMPUG00000007750) #37	HECW2 (ENSMPUG00000007553)	STK17B (ENSMPUG00000007548)
Canidae	ANCESTRAL SPECIES	20	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01070000254992	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.b ##29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b.c #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000182922.a.a.a.b.a.a.b	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT01070000254992	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT01030000235401	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.b ##29	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Dingo	MODERN SPECIES	398	HYCC2 (ENSCAFG00020003567)	ORC2 (ENSCAFG00020003630) #7	NIF3L1 (ENSCAFG00020004364) #8	PPIL3 (ENSCAFG00020004369) #9	CLK1 (ENSCAFG00020004400) #10	ENSCAFG00020004433 #11	ENSCAFG00020004462 #12	ENSCAFG00020004494 #13	ENSCAFG00020004535	SGO2 (ENSCAFG00020004540) #16	KCTD18 (ENSCAFG00020004542) #17	SPATS2L (ENSCAFG00020004547) #18	MAIP1 (ENSCAFG00020004558) #19	ENSCAFG00020004570 #20	C2orf69 (ENSCAFG00020004572) #21	SATB2 (ENSCAFG00020004584) #22	PLCL1 (ENSCAFG00020004643) #24	ENSCAFG00020004654	BOLL (ENSCAFG00020004659) #25	MARS2 (ENSCAFG00020004676) #26	RFTN2 (ENSCAFG00020004690) #27	MOB4 (ENSCAFG00020004694) #28	ENSCAFG00020004700 ##29	HSPD1 (ENSCAFG00020004710) #30	ENSCAFG00020004741	COQ10B (ENSCAFG00020004745) #31	SF3B1 (ENSCAFG00020004750) #32	ANKRD44 (ENSCAFG00020004766) #33	PGAP1 (ENSCAFG00020004924) #34	GTF3C3 (ENSCAFG00020004945) #36	CCDC150 (ENSCAFG00020004958) #37
Dog	MODERN SPECIES	30	ORC2 (ENSCAFG00845029735) #7	NIF3L1 (ENSCAFG00845029603) #8	PPIL3 (ENSCAFG00845029569) #9	CLK1 (ENSCAFG00845029455) #10	ENSCAFG00845029244 #11	AOX2 (ENSCAFG00845029172) #12	AOX4 (ENSCAFG00845028797) #13	RPL21 (ENSCAFG00845028706)	SGO2 (ENSCAFG00845028523) #16	KCTD18 (ENSCAFG00845028480) #17	ENSCAFG00845028453	SPATS2L (ENSCAFG00845028292) #18	MAIP1 (ENSCAFG00845028191) #19	TYW5 (ENSCAFG00845028098) #20	C2orf69 (ENSCAFG00845028048) #21	SATB2 (ENSCAFG00845027789) #22	PLCL1 (ENSCAFG00845027611) #24	BOLL (ENSCAFG00845027465) #25	MARS2 (ENSCAFG00845027432) #26	RFTN2 (ENSCAFG00845027373) #27	ENSCAFG00845027301	HSPE1 (ENSCAFG00845027216) #28	HSPD1 (ENSCAFG00845027075) #30	SF3B1 (ENSCAFG00845026632) #32	COQ10B (ENSCAFG00845026337) #31	ENSCAFG00845026214	ANKRD44 (ENSCAFG00845025354) #33	PGAP1 (ENSCAFG00845024751) #34	C2orf66 (ENSCAFG00845024629) #35	GTF3C3 (ENSCAFG00845024524) #36	CCDC150 (ENSCAFG00845023218) #37
Red fox	MODERN SPECIES	41	ORC2 (ENSVVUG00000018996) #7	NIF3L1 (ENSVVUG00000019010) #8	PPIL3 (ENSVVUG00000019021) #9	CLK1 (ENSVVUG00000019051) #10	ENSVVUG00000019055	BZW1 (ENSVVUG00000019058) #11	ENSVVUG00000019458 #12	ENSVVUG00000025395 #13	SGO2 (ENSVVUG00000025845) #16	KCTD18 (ENSVVUG00000025846) #17	ENSVVUG00000025847	SPATS2L (ENSVVUG00000025851) #18	MAIP1 (ENSVVUG00000025867) #19	TYW5 (ENSVVUG00000025871) #20	C2orf69 (ENSVVUG00000025875) #21	SATB2 (ENSVVUG00000025880) #22	ENSVVUG00000025893	PLCL1 (ENSVVUG00000025896) #24	ENSVVUG00000025899	BOLL (ENSVVUG00000025901) #25	MARS2 (ENSVVUG00000025921) #26	RFTN2 (ENSVVUG00000025925) #27	MOB4 (ENSVVUG00000025930) #28	ENSVVUG00000025937 ##29	HSPD1 (ENSVVUG00000025940) #30	COQ10B (ENSVVUG00000025944) #31	SF3B1 (ENSVVUG00000025948) #32	ANKRD44 (ENSVVUG00000025957) #33	PGAP1 (ENSVVUG00000025981) #34	GTF3C3 (ENSVVUG00000025988) #36	CCDC150 (ENSVVUG00000025997) #37
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00940000154107.b #16	ENSGT00530000064234.k #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00390000004856.w.b	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00940000167249	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.o #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00940000154107.b #16	ENSGT00530000064234.k #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00390000004856.w.b	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.o #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00940000154107.b #16	ENSGT00530000064234.k #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00390000004856.w.b	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.o #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
lion	MODERN SPECIES	8	NDUFB3 (ENSPLOG00000015772)	HYCC2 (ENSPLOG00000015803)	ORC2 (ENSPLOG00000015970) #7	NIF3L1 (ENSPLOG00000016032) #8	PPIL3 (ENSPLOG00000016086) #9	CLK1 (ENSPLOG00000016118) #10	BZW1 (ENSPLOG00000016320) #11	ENSPLOG00000016579 #12	SGO2 (ENSPLOG00000016840) #16	KCTD18 (ENSPLOG00000016872) #17	SPATS2L (ENSPLOG00000016944) #18	MAIP1 (ENSPLOG00000010863) #19	TYW5 (ENSPLOG00000010891) #20	C2orf69 (ENSPLOG00000010947) #21	FTCDNL1 (ENSPLOG00000010989)	SATB2 (ENSPLOG00000011078) #22	PLCL1 (ENSPLOG00000011340) #24	ENSPLOG00000011407	BOLL (ENSPLOG00000011460) #25	MARS2 (ENSPLOG00000011689) #26	RFTN2 (ENSPLOG00000011715) #27	MOB4 (ENSPLOG00000011894) #28	ENSPLOG00000012097 #29	HSPD1 (ENSPLOG00000012200) #30	ENSPLOG00000012317 #31	ENSPLOG00000012415	SF3B1 (ENSPLOG00000012481) #32	ANKRD44 (ENSPLOG00000012744) #33	PGAP1 (ENSPLOG00000012908) #34	GTF3C3 (ENSPLOG00000013217) #36	CCDC150 (ENSPLOG00000013330) #37
leopard	MODERN SPECIES	115	HYCC2 (ENSPPRG00000010091)	ORC2 (ENSPPRG00000010416) #7	NIF3L1 (ENSPPRG00000011329) #8	PPIL3 (ENSPPRG00000011604) #9	CLK1 (ENSPPRG00000018038) #10	BZW1 (ENSPPRG00000021144) #11	ENSPPRG00000001179 #12	ENSPPRG00000002911 #13	SGO2 (ENSPPRG00000003606) #16	KCTD18 (ENSPPRG00000003708) #17	SPATS2L (ENSPPRG00000005755) #18	MAIP1 (ENSPPRG00000005920) #19	TYW5 (ENSPPRG00000005974) #20	C2orf69 (ENSPPRG00000006014) #21	FTCDNL1 (ENSPPRG00000006344)	SATB2 (ENSPPRG00000006763) #22	ENSPPRG00000006827	ENSPPRG00000018398	PLCL1 (ENSPPRG00000006990) #24	BOLL (ENSPPRG00000007352) #25	MARS2 (ENSPPRG00000018464) #26	RFTN2 (ENSPPRG00000007473) #27	ENSPPRG00000007733 #29	MOB4 (ENSPPRG00000008095) #28	ENSPPRG00000008279 #30	ENSPPRG00000018513	ENSPPRG00000008688 #31	SF3B1 (ENSPPRG00000009090) #32	ANKRD44 (ENSPPRG00000009896) #33	PGAP1 (ENSPPRG00000010301) #34	C2orf66 (ENSPPRG00000010325) #35
Tiger	MODERN SPECIES	481										ENSPTIG00000017025 #17	SPATS2L (ENSPTIG00000009880) #18	MAIP1 (ENSPTIG00000007574) #19	TYW5 (ENSPTIG00000005502) #20	C2orf69 (ENSPTIG00000004162) #21	FTCDNL1 (ENSPTIG00000019386)	SATB2 (ENSPTIG00000015066) #22	PLCL1 (ENSPTIG00000013578) #24	BOLL (ENSPTIG00000011925) #25	RFTN2 (ENSPTIG00000010229) #27	MOB4 (ENSPTIG00000008517) #28	HSPE1 (ENSPTIG00000007777) #29	HSPD1 (ENSPTIG00000006760) #30	ENSPTIG00000004508 #31	SF3B1 (ENSPTIG00000021557) #32	ANKRD44 (ENSPTIG00000018232) #33	PGAP1 (ENSPTIG00000013798) #34	C2orf66 (ENSPTIG00000013318) #35	GTF3C3 (ENSPTIG00000011830) #36	CCDC150 (ENSPTIG00000010300) #37	ENSPTIG00000007344	HECW2 (ENSPTIG00000004499)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.b ##29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.r #31	ENSGT00390000018393 #32	ENSGT00950000182908.D.f #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Megabat	MODERN SPECIES	173																SATB2 (ENSPVAG00000012029) #22
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.d ##29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367.r #31	ENSGT00390000018393 #32	ENSGT00950000182908.D.f #33	ENSGT00390000016484 #34	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466	ENSGT00940000154014.b.b
Greater horseshoe bat	MODERN SPECIES	26	ORC2 (ENSRFEG00010017722) #7	NIF3L1 (ENSRFEG00010017775) #8	PPIL3 (ENSRFEG00010017851) #9	CLK1 (ENSRFEG00010017933) #10	BZW1 (ENSRFEG00010018183) #11	ENSRFEG00010018448 #12	ENSRFEG00010019480 #13	AOX1 (ENSRFEG00010021989) #15	SGO2 (ENSRFEG00010022000) #16	KCTD18 (ENSRFEG00010022002) #17	SPATS2L (ENSRFEG00010022016) #18	MAIP1 (ENSRFEG00010022032) #19	TYW5 (ENSRFEG00010022036) #20	C2orf69 (ENSRFEG00010022039) #21	FTCDNL1 (ENSRFEG00010022040)	SATB2 (ENSRFEG00010022046) #22	PLCL1 (ENSRFEG00010022056) #24	BOLL (ENSRFEG00010022065) #25	MARS2 (ENSRFEG00010022069) #26	RFTN2 (ENSRFEG00010022072) #27	ENSRFEG00010022073	MOB4 (ENSRFEG00010022077) #28	ENSRFEG00010022080 ##29	HSPD1 (ENSRFEG00010022083) #30	ENSRFEG00010022086 #31	SF3B1 (ENSRFEG00010022087) #32	ANKRD44 (ENSRFEG00010022091) #33	PGAP1 (ENSRFEG00010022103) #34	GTF3C3 (ENSRFEG00010022114) #36	CCDC150 (ENSRFEG00010022122) #37	HECW2 (ENSRFEG00010022130)
Microbat	MODERN SPECIES	940	ORC2 (ENSMLUG00000001662) #7	NIF3L1 (ENSMLUG00000001658) #8	PPIL3 (ENSMLUG00000013189) #9	CLK1 (ENSMLUG00000000344) #10	BZW1 (ENSMLUG00000001653) #11	ENSMLUG00000022412 #12	ENSMLUG00000027760 #13	AOX1 (ENSMLUG00000016684) #15	SGO2 (ENSMLUG00000004245) #16	KCTD18 (ENSMLUG00000006605) #17	SPATS2L (ENSMLUG00000006594) #18	MAIP1 (ENSMLUG00000015960) #19	TYW5 (ENSMLUG00000015955) #20	C2orf69 (ENSMLUG00000026751) #21	ENSMLUG00000011411	SATB2 (ENSMLUG00000001554) #22	PLCL1 (ENSMLUG00000002677) #24	BOLL (ENSMLUG00000004999) #25	RFTN2 (ENSMLUG00000004991) #27	MOB4 (ENSMLUG00000004971) #28	ENSMLUG00000000883	HSPE1 (ENSMLUG00000000878) ##29	ENSMLUG00000000871 #30	COQ10B (ENSMLUG00000000865) #31	SF3B1 (ENSMLUG00000000840) #32	ENSMLUG00000005254	ANKRD44 (ENSMLUG00000010842) #33	PGAP1 (ENSMLUG00000010784) #34	GTF3C3 (ENSMLUG00000024692) #36	CCDC150 (ENSMLUG00000001986) #37	HECW2 (ENSMLUG00000007654)
Equus	ANCESTRAL SPECIES	18	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b.b #15	ENSGT00950000183114.a.b.b.f.b.a #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00390000005254.i.a.b	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37
Donkey	MODERN SPECIES	24	NIF3L1 (ENSEASG00005001400) #8	CLK1 (ENSEASG00005000996) #10	BZW1 (ENSEASG00005000922) #11	ENSEASG00005021400 #12	ENSEASG00005028089 #13	ENSEASG00005029204 #12	ENSEASG00005024840 #15	ENSEASG00005027058 #15	SGO2 (ENSEASG00005024538) #16	KCTD18 (ENSEASG00005020042) #17	SPATS2L (ENSEASG00005020050) #18	MAIP1 (ENSEASG00005020067) #19	TYW5 (ENSEASG00005026976) #20	C2orf69 (ENSEASG00005031146) #21	ENSEASG00005020080	ENSEASG00005029514 #22	PLCL1 (ENSEASG00005020113) #24	ENSEASG00005020114	BOLL (ENSEASG00005020122) #25	MARS2 (ENSEASG00005020133) #26	RFTN2 (ENSEASG00005020136) #27	MOB4 (ENSEASG00005020142) #28	HSPE1 (ENSEASG00005034821) #29	ENSEASG00005020152 #30	COQ10B (ENSEASG00005032559) #31	SF3B1 (ENSEASG00005020159) #32	ENSEASG00005020167	ANKRD44 (ENSEASG00005020169) #33	PGAP1 (ENSEASG00005020202) #34	C2orf66 (ENSEASG00005029887) #35	GTF3C3 (ENSEASG00005020250) #36
Horse	MODERN SPECIES	9	CLK1 (ENSECAG00000015355) #10	BZW1 (ENSECAG00000011768) #11	ENSECAG00000015199 #12	AOX4 (ENSECAG00000024701) #13	ENSECAG00000032497 #13	ENSECAG00000058396	ENSECAG00000007830 #15	ENSECAG00000018147 #15	SGO2 (ENSECAG00000006038) #16	KCTD18 (ENSECAG00000001039) #17	SPATS2L (ENSECAG00000018564) #18	MAIP1 (ENSECAG00000050073) #19	TYW5 (ENSECAG00000014128) #20	C18H2orf69 (ENSECAG00000014107) #21	ENSECAG00000013663	SATB2 (ENSECAG00000010043) #22	ENSECAG00000058569	BOLL (ENSECAG00000040654) #25	PLCL1 (ENSECAG00000007274) #24	MARS2 (ENSECAG00000004931) #26	RFTN2 (ENSECAG00000021296) #27	MOB4 (ENSECAG00000015560) #28	ENSECAG00000055696	ENSECAG00000049872 ##29	HSPD1 (ENSECAG00000008968) #30	COQ10B (ENSECAG00000006436) #31	SF3B1 (ENSECAG00000021657) #32	ENSECAG00000034847	ANKRD44 (ENSECAG00000008835) #33	PGAP1 (ENSECAG00000019980) #34	C2orf66 (ENSECAG00000058124) #35
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Xenarthra	ANCESTRAL SPECIES	28	ENSGT00390000011295.a	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000153189.B #9	ENSGT00940000159722 #10	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22
Sloth	MODERN SPECIES	1727																SATB2 (ENSCHOG00000012005) #22
Armadillo	MODERN SPECIES	1606	ENSDNOG00000007984	ORC2 (ENSDNOG00000001397) #7	NIF3L1 (ENSDNOG00000042985) #8	PPIL3 (ENSDNOG00000039120) #9	CLK1 (ENSDNOG00000007543) #10	ENSDNOG00000044684 #12	ENSDNOG00000045945 #13	AOX1 (ENSDNOG00000017910) #15	SGO2 (ENSDNOG00000041594) #16	KCTD18 (ENSDNOG00000033036) #17	SPATS2L (ENSDNOG00000011539) #18	MAIP1 (ENSDNOG00000031166) #19	TYW5 (ENSDNOG00000016467) #20	C2orf69 (ENSDNOG00000031567) #21	ENSDNOG00000031405	SATB2 (ENSDNOG00000001292) #22	ENSDNOG00000039662	EGLN2 (ENSDNOG00000044897)	RAB4B (ENSDNOG00000035069)	MIA (ENSDNOG00000025220)	ENSDNOG00000018717	ACTMAP (ENSDNOG00000034966)	ITPKC (ENSDNOG00000040932)	COQ8B (ENSDNOG00000000156)	NUMBL (ENSDNOG00000000154)	LTBP4 (ENSDNOG00000045716)	SHKBP1 (ENSDNOG00000007810)	ENSDNOG00000046051
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000163579	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000015228 #7	ENSGT00390000003590 #8	ENSGT00940000163579	ENSGT00940000159722 #10	ENSGT00390000012561.b #11	ENSGT00950000183114.a.b.b.f.a.b #12	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.c.a #29	ENSGT00390000005727.a.b.b #30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Elephant	MODERN SPECIES	301	ORC2 (ENSLAFG00000022430) #7	NIF3L1 (ENSLAFG00000009897) #8	ENSLAFG00000009894	CLK1 (ENSLAFG00000009891) #10	BZW1 (ENSLAFG00000009883) #11	ENSLAFG00000026161 #12	ENSLAFG00000028503 #13	AOX1 (ENSLAFG00000007070) #15	SGO2 (ENSLAFG00000028451) #16	KCTD18 (ENSLAFG00000003281) #17	SPATS2L (ENSLAFG00000001437) #18	MAIP1 (ENSLAFG00000011639) #19	TYW5 (ENSLAFG00000018708) #20	C2orf69 (ENSLAFG00000018707) #21	ENSLAFG00000030925	SATB2 (ENSLAFG00000002924) #22	PLCL1 (ENSLAFG00000016349) #24	BOLL (ENSLAFG00000010956) #25	MARS2 (ENSLAFG00000030667) #26	RFTN2 (ENSLAFG00000000141) #27	MOB4 (ENSLAFG00000008054) #28	ENSLAFG00000000057 #29	HSPD1 (ENSLAFG00000000053) #30	COQ10B (ENSLAFG00000000052) #31	SF3B1 (ENSLAFG00000001956) #32	ANKRD44 (ENSLAFG00000002537) #33	PGAP1 (ENSLAFG00000022372) #34	GTF3C3 (ENSLAFG00000001792) #36	CCDC150 (ENSLAFG00000008819) #37	HECW2 (ENSLAFG00000011976)	STK17B (ENSLAFG00000011972)
Hyrax	MODERN SPECIES	1548																SATB2 (ENSPCAG00000012822) #22
Tenrec	MODERN SPECIES	1907																SATB2 (ENSETEG00000013425) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT01050000244869.a.a.a.b.a.a.a.a.a	ENSGT01050000244869.a.a.a.b.a.a.a.b.a	ENSGT00940000162662	ENSGT01050000244869.a.a.a.b.a.b.d	ENSGT01050000244869.a.a.a.b.a.b.c	ENSGT01050000244869.a.a.a.b.a.a.a.b.b	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a #29	ENSGT00390000005727.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT01050000244869.a.a.a.b.a.a.a.a.a	ENSGT01050000244869.a.a.a.b.a.a.a.b.a	ENSGT00940000162662	ENSGT01050000244869.a.a.a.b.a.b.d	ENSGT01050000244869.a.a.a.b.a.b.c	ENSGT01050000244869.a.a.a.b.a.a.b.c	ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a #29	ENSGT00390000005727.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000155466
Diprotodontia	ANCESTRAL SPECIES	11							ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a #29	ENSGT00390000005727.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00940000167666
Diprotodontia_a	ANCESTRAL SPECIES	9							ENSGT00950000183114.a.b.b.f.a.a #13	ENSGT00950000183114.a.b.b.f.b #15	ENSGT00940000154107.b #16	ENSGT00530000064234 #17	ENSGT00390000001138.b #18	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000005581.b	ENSGT00390000008096.B #22	ENSGT00940000158407 #24	ENSGT00530000063480.a #25	ENSGT00550000075136 #26	ENSGT00530000063609.a #27	ENSGT01050000244956.b #28	ENSGT00390000006350.m.a.b #29	ENSGT00390000005727.b ##30	ENSGT00940000155367 #31	ENSGT00390000018393 #32	ENSGT00950000182908.D #33	ENSGT00390000016484 #34	ENSGT00390000009468 #35	ENSGT00390000016929 #36	ENSGT00390000005285 #37	ENSGT00390000015052.j.b
koala	MODERN SPECIES	52																SATB2 (ENSPCIG00000011693) #22	ENSPCIG00000014254	PLCL1 (ENSPCIG00000015570) #24	ENSPCIG00000010605 #25	MARS2 (ENSPCIG00000010610) #26	RFTN2 (ENSPCIG00000010611) #27	ENSPCIG00000010617 #28	ENSPCIG00000010634 #29	HSPD1 (ENSPCIG00000010636) ##30	COQ10B (ENSPCIG00000010639) #31	ENSPCIG00000032633	SF3B1 (ENSPCIG00000010642) #32	ANKRD44 (ENSPCIG00000010651) #33	PGAP1 (ENSPCIG00000010659) #34	GTF3C3 (ENSPCIG00000010674) #36	ENSPCIG00000010684 #37
Common wonbat	MODERN SPECIES	1018	ENSVURG00010015914	ENSVURG00010015949	ENSVURG00010016231	ENSVURG00010016251	ENSVURG00010016261	ENSVURG00010016266	ENSVURG00010016286	ENSVURG00010016392	ENSVURG00010016490	KCTD18 (ENSVURG00010016512) #17	SPATS2L (ENSVURG00010016539) #18	MAIP1 (ENSVURG00010016655) #19	TYW5 (ENSVURG00010016662) #20	C2orf69 (ENSVURG00010016673) #21	ENSVURG00010016695	SATB2 (ENSVURG00010016725) #22	ENSVURG00010016787	ENSVURG00010016799	ENSVURG00010016811	PLCL1 (ENSVURG00010016821) #24	BOLL (ENSVURG00010016845) #25	MARS2 (ENSVURG00010016927) #26	RFTN2 (ENSVURG00010016931) #27	MOB4 (ENSVURG00010016938) #28	ENSVURG00010016957 #29	HSPD1 (ENSVURG00010016966) ##30	COQ10B (ENSVURG00010016979) #31	SF3B1 (ENSVURG00010016994) #32	ANKRD44 (ENSVURG00010017027) #33	PGAP1 (ENSVURG00010017062) #34	C2orf66 (ENSVURG00010017088) #35
Wallaby	MODERN SPECIES	2771																ENSMEUG00000005161 #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000028897	ENSSHAG00000001437	ENSSHAG00000017209	ENSSHAG00000017107	ENSSHAG00000017063	ENSSHAG00000016877 #13	ENSSHAG00000016703 #13	ENSSHAG00000016525 #15	ENSSHAG00000024050 #16	KCTD18 (ENSSHAG00000016332) #17	SPATS2L (ENSSHAG00000016122) #18	MAIP1 (ENSSHAG00000014443) #19	TYW5 (ENSSHAG00000014351) #20	C2orf69 (ENSSHAG00000014333) #21	FTCDNL1 (ENSSHAG00000013838)	SATB2 (ENSSHAG00000011077) #22	PLCL1 (ENSSHAG00000018454) #24	BOLL (ENSSHAG00000018057) #25	RFTN2 (ENSSHAG00000017876) #27	MARS2 (ENSSHAG00000017980) #26	MOB4 (ENSSHAG00000017821) #28	HSPE1 (ENSSHAG00000017770) #29	HSPD1 (ENSSHAG00000017750) ##30	COQ10B (ENSSHAG00000017719) #31	SF3B1 (ENSSHAG00000017564) #32	ANKRD44 (ENSSHAG00000016824) #33	PGAP1 (ENSSHAG00000016631) #34	C2orf66 (ENSSHAG00000029653) #35	GTF3C3 (ENSSHAG00000016483) #36	CCDC150 (ENSSHAG00000016389) #37	HECW2 (ENSSHAG00000015049)
Opossum	MODERN SPECIES	3	ENSMODG00000045687	ENSMODG00000037855	ENSMODG00000048837	ENSMODG00000024581	ENSMODG00000051203	AOX4 (ENSMODG00000028424) #13	ENSMODG00000041712 #13	AOX1 (ENSMODG00000012485) #15	ENSMODG00000012421 #16	KCTD18 (ENSMODG00000012419) #17	SPATS2L (ENSMODG00000012413) #18	MAIP1 (ENSMODG00000012389) #19	TYW5 (ENSMODG00000012381) #20	C2orf69 (ENSMODG00000012380) #21	ENSMODG00000024601	SATB2 (ENSMODG00000012352) #22	PLCL1 (ENSMODG00000012331) #24	BOLL (ENSMODG00000012323) #25	MARS2 (ENSMODG00000024604) #26	RFTN2 (ENSMODG00000012311) #27	MOB4 (ENSMODG00000012305) #28	HSPE1 (ENSMODG00000012295) ##29	ENSMODG00000012289 ##30	COQ10B (ENSMODG00000012281) #31	SF3B1 (ENSMODG00000012275) #32	ENSMODG00000012241	ANKRD44 (ENSMODG00000012238) #33	PGAP1 (ENSMODG00000012214) #34	C2orf66 (ENSMODG00000028631) #35	GTF3C3 (ENSMODG00000012196) #36	CCDC150 (ENSMODG00000012183) #37
Platypus	MODERN SPECIES	18	ENSOANG00000003495	ENSOANG00000045194	NDUFB3 (ENSOANG00000036170)	HYCC2 (ENSOANG00000044954)	ORC2 (ENSOANG00000010096) #7	NIF3L1 (ENSOANG00000010095) #8	ENSOANG00000008065	CLK1 (ENSOANG00000012539) #10	BZW1 (ENSOANG00000010824) #11	ENSOANG00000049296 #13	ENSOANG00000044935 #16	ENSOANG00000045688 #18	ENSOANG00000036911 #19	TYW5 (ENSOANG00000040342) #20	ENSOANG00000002096 #21	SATB2 (ENSOANG00000039784) #22	PLCL1 (ENSOANG00000044001) #24	BOLL (ENSOANG00000019928) #25	RFTN2 (ENSOANG00000020014) #27	MOB4 (ENSOANG00000044127) #28	ENSOANG00000008195	ENSOANG00000010415 ##29	HSPD1 (ENSOANG00000010414) ##30	COQ10B (ENSOANG00000043506) #31	SF3B1 (ENSOANG00000045106) #32	ANKRD44 (ENSOANG00000040430) #33	PGAP1 (ENSOANG00000038233) #34	GTF3C3 (ENSOANG00000043590) #36	ENSOANG00000050849 #37	HECW2 (ENSOANG00000042120)	STK17B (ENSOANG00000047876)