Murinae	ANCESTRAL SPECIES	9	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b	ENSGT00950000183114.a.b.b.f.a.a	ENSGT00950000183114.a.b.b.f.b	ENSGT00940000154107.b	ENSGT00530000064234	ENSGT00390000001138.b	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407	ENSGT01030000235401	ENSGT00530000063480.a	ENSGT00550000075136	ENSGT00530000063609.a	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a	ENSGT00390000005727.a.b.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mus	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b	ENSGT00950000183114.a.b.b.f.a.a	ENSGT00950000183114.a.b.b.f.b	ENSGT00940000154107.b.m.a	ENSGT00530000064234	ENSGT00390000001138.b	ENSGT00390000004145 #19	ENSGT00940000158493 #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407	ENSGT01030000235401	ENSGT00530000063480.a	ENSGT00550000075136	ENSGT00530000063609.a	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a	ENSGT00390000005727.a.b.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b	ENSGT00950000183114.a.b.b.f.a.b	ENSGT00950000183114.a.b.b.f.a.a	ENSGT00950000183114.a.b.b.f.b	ENSGT00940000154107.b.m.a	ENSGT00530000064234	ENSGT00390000001138.b	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407	ENSGT01030000235401	ENSGT00530000063480.a	ENSGT00550000075136	ENSGT00530000063609.a	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b	ENSGT00390000005727.a.b.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.p	ENSGT00950000183114.a.b.b.f.a.b	ENSGT00950000183114.a.b.b.f.a.a	ENSGT00950000183114.a.b.b.f.b	ENSGT00940000154107.b.m.a	ENSGT00530000064234	ENSGT00390000001138.b	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407	ENSGT01030000235401	ENSGT00530000063480.a	ENSGT00550000075136	ENSGT00530000063609.a	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b.a.a	ENSGT00390000005727.a.b.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011295.a	ENSGT00390000015228	ENSGT00390000003590	ENSGT00940000153189.B	ENSGT00940000159722	ENSGT00390000012561.b.p	ENSGT00950000183114.a.b.b.f.a.b	ENSGT00950000183114.a.b.b.f.a.a	ENSGT00950000183114.a.b.b.f.b	ENSGT00940000154107.b.m.a	ENSGT00530000064234	ENSGT00390000001138.b	ENSGT00390000004145 #19	ENSGT00940000158493.c #20	ENSGT00390000005550 #21	ENSGT00390000008096.B #22	ENSGT00940000157452 #23	ENSGT00940000158407	ENSGT01030000235401	ENSGT00530000063480.a	ENSGT00550000075136	ENSGT00530000063609.a	ENSGT01050000244956.b.d	ENSGT00390000006350.m.a.c.a.y.b.a.a	ENSGT00390000005727.a.b.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000016929.b	ENSGT00390000005285
Steppe mouse	MODERN SPECIES	84													Maip1 (ENSMSIG00000012877) #19	Tyw5 (ENSMSIG00000012899) #20	1700066M21Rik (ENSMSIG00000012910) #21	Satb2 (ENSMSIG00000012940) #22	Hsfy2 (ENSMSIG00000013021) #23
spretus	MODERN SPECIES		Hycc2 (MGP_SPRETEiJ_G0014973)	Orc2 (MGP_SPRETEiJ_G0014972)	Nif3l1 (MGP_SPRETEiJ_G0014971)	Ppil3 (MGP_SPRETEiJ_G0014970)	Clk1 (MGP_SPRETEiJ_G0014969)	Bzw1 (MGP_SPRETEiJ_G0014968)	Aox2 (MGP_SPRETEiJ_G0014967)	Aox4 (MGP_SPRETEiJ_G0014966)	Aox3 (MGP_SPRETEiJ_G0014965)	Aox1 (MGP_SPRETEiJ_G0014964)	Sgo2a (MGP_SPRETEiJ_G0014963)	Kctd18 (MGP_SPRETEiJ_G0014962)	Spats2l (MGP_SPRETEiJ_G0014961)	Maip1 (MGP_SPRETEiJ_G0014960) #19	Tyw5 (MGP_SPRETEiJ_G0014959) #20	Satb2 (MGP_SPRETEiJ_G0014957) #22	Hsfy2 (MGP_SPRETEiJ_G0014956) #23	Plcl1 (MGP_SPRETEiJ_G0014955)	MGP_SPRETEiJ_G0014954	Mars2 (MGP_SPRETEiJ_G0014953)	Rftn2 (MGP_SPRETEiJ_G0014952)	Mob4 (MGP_SPRETEiJ_G0014951)	MGP_SPRETEiJ_G0014950	MGP_SPRETEiJ_G0014949	MGP_SPRETEiJ_G0014948	Sf3b1 (MGP_SPRETEiJ_G0014947)	Ankrd44 (MGP_SPRETEiJ_G0014946)	MGP_SPRETEiJ_G0014945	Gtf3c3 (MGP_SPRETEiJ_G0014944)	Ccdc150 (MGP_SPRETEiJ_G0014943)	Hecw2 (MGP_SPRETEiJ_G0014942)
Mouse	MODERN SPECIES		Orc2 (ENSMUSG00000026037)	Nif3l1 (ENSMUSG00000026036)	Ppil3 (ENSMUSG00000026035)	Clk1 (ENSMUSG00000026034)	Bzw1 (ENSMUSG00000051223)	Aox2 (ENSMUSG00000079554)	Aox4 (ENSMUSG00000038242)	Aox3 (ENSMUSG00000064294)	Aox1 (ENSMUSG00000063558)	Sgo2a (ENSMUSG00000026039)	Kctd18 (ENSMUSG00000054770)	Spats2l (ENSMUSG00000038305)	Maip1 (ENSMUSG00000025971) #19	Tyw5 (ENSMUSG00000048495) #20	1700066M21Rik (ENSMUSG00000038323) #21	Satb2 (ENSMUSG00000038331) #22	Hsfy2 (ENSMUSG00000045336) #23	Plcl1 (ENSMUSG00000038349)	Boll (ENSMUSG00000025977)	Mars2 (ENSMUSG00000046994)	Rftn2 (ENSMUSG00000025978)	Mob4 (ENSMUSG00000025979)	Hspe1 (ENSMUSG00000073676)	Hspd1 (ENSMUSG00000025980)	Coq10b (ENSMUSG00000025981)	Sf3b1 (ENSMUSG00000025982)	Ankrd44 (ENSMUSG00000052331)	Pgap1 (ENSMUSG00000073678)	Gm34066 (ENSMUSG00000109809)	Gtf3c3 (ENSMUSG00000041303)	Ccdc150 (ENSMUSG00000025983)
Ryukyu mouse	MODERN SPECIES		Nif3l1 (MGP_CAROLIEiJ_G0014165)	Ppil3 (MGP_CAROLIEiJ_G0014164)	Clk1 (MGP_CAROLIEiJ_G0014163)	Bzw1 (MGP_CAROLIEiJ_G0014162)	Aox2 (MGP_CAROLIEiJ_G0014161)	Aox4 (MGP_CAROLIEiJ_G0014160)	Aox3 (MGP_CAROLIEiJ_G0014159)	Aox1 (MGP_CAROLIEiJ_G0014158)	MGP_CAROLIEiJ_G0014157	MGP_CAROLIEiJ_G0014156	Kctd18 (MGP_CAROLIEiJ_G0014155)	Spats2l (MGP_CAROLIEiJ_G0014154)	Maip1 (MGP_CAROLIEiJ_G0014153) #19	Tyw5 (MGP_CAROLIEiJ_G0014152) #20	1700066M21Rik (MGP_CAROLIEiJ_G0014151) #21	Satb2 (MGP_CAROLIEiJ_G0014150) #22	Hsfy2 (MGP_CAROLIEiJ_G0014149) #23	Plcl1 (MGP_CAROLIEiJ_G0014148)	Mars2 (MGP_CAROLIEiJ_G0014147)	Rftn2 (MGP_CAROLIEiJ_G0014146)	Mob4 (MGP_CAROLIEiJ_G0014145)	MGP_CAROLIEiJ_G0014144	Hspd1 (MGP_CAROLIEiJ_G0014143)	Coq10b (MGP_CAROLIEiJ_G0014142)	Sf3b1 (MGP_CAROLIEiJ_G0014141)	Ankrd44 (MGP_CAROLIEiJ_G0014140)	Pgap1 (MGP_CAROLIEiJ_G0014139)	MGP_CAROLIEiJ_G0014138	Ccdc150 (MGP_CAROLIEiJ_G0014137)	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)
Shrew mouse	MODERN SPECIES	18	Hycc2 (MGP_PahariEiJ_G0027405)	Orc2 (MGP_PahariEiJ_G0027404)	Nif3l1 (MGP_PahariEiJ_G0027403)	Ppil3 (MGP_PahariEiJ_G0027402)	Clk1 (MGP_PahariEiJ_G0027401)	Bzw1 (MGP_PahariEiJ_G0027400)	Aox4 (MGP_PahariEiJ_G0027399)	Aox3 (MGP_PahariEiJ_G0027398)	Aox1 (MGP_PahariEiJ_G0027397)	Sgo2a (MGP_PahariEiJ_G0027396)	Kctd18 (MGP_PahariEiJ_G0027395)	Spats2l (MGP_PahariEiJ_G0027394)	Maip1 (MGP_PahariEiJ_G0027393) #19	Tyw5 (MGP_PahariEiJ_G0027392) #20	1700066M21Rik (MGP_PahariEiJ_G0027391) #21	Satb2 (MGP_PahariEiJ_G0027390) #22	Hsfy2 (MGP_PahariEiJ_G0027389) #23	Plcl1 (MGP_PahariEiJ_G0027388)	Boll (MGP_PahariEiJ_G0027387)	Mars2 (MGP_PahariEiJ_G0027386)	Rftn2 (MGP_PahariEiJ_G0027385)	MGP_PahariEiJ_G0027384	MGP_PahariEiJ_G0027383	MGP_PahariEiJ_G0027382	Coq10b (MGP_PahariEiJ_G0027381)	Ankrd44 (MGP_PahariEiJ_G0027379)	Pgap1 (MGP_PahariEiJ_G0027378)	Gtf3c3 (MGP_PahariEiJ_G0027377)	Ccdc150 (MGP_PahariEiJ_G0027376)	Hecw2 (MGP_PahariEiJ_G0027375)	Stk17b (MGP_PahariEiJ_G0027374)
Rat	MODERN SPECIES	19	Orc2 (ENSRNOG00000012558)	Nif3l1 (ENSRNOG00000013446)	Ppil3 (ENSRNOG00000013636)	Clk1 (ENSRNOG00000025768)	Bzw1 (ENSRNOG00000013977)	Aox2 (ENSRNOG00000033923)	ENSRNOG00000068995	Aox3 (ENSRNOG00000014555)	Aox1 (ENSRNOG00000015354)	Sgo2 (ENSRNOG00000027035)	Kctd18 (ENSRNOG00000027091)	Spats2l (ENSRNOG00000016012)	Maip1 (ENSRNOG00000015983) #19	Tyw5 (ENSRNOG00000010100) #20	RGD1306941 (ENSRNOG00000010185) #21	Satb2 (ENSRNOG00000010188) #22	Hsfy2 (ENSRNOG00000038569) #23	Plcl1 (ENSRNOG00000032659)	Boll (ENSRNOG00000054379)	Mars2 (ENSRNOG00000065339)	AABR07067762.1 (ENSRNOG00000055383)	Rftn2 (ENSRNOG00000015594)	Mob4 (ENSRNOG00000014980)	Hspe1 (ENSRNOG00000051624)	Hspd1 (ENSRNOG00000014525)	Coq10b (ENSRNOG00000014456)	Sf3b1 (ENSRNOG00000013516)	Tmem258b (ENSRNOG00000032740)	Ankrd44 (ENSRNOG00000021384)	Pgap1 (ENSRNOG00000013388)	LOC686030 (ENSRNOG00000067303)