Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Glires ANCESTRAL SPECIES 14 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Lagomorpha ANCESTRAL SPECIES 13 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.a.b #29 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Rabbit MODERN SPECIES 18 PPIL3 (ENSOCUG00000010661) #7 CLK1 (ENSOCUG00000010653) #8 ENSOCUG00000010647 #9 ENSOCUG00000026480 #10 ENSOCUG00000024593 #11 ENSOCUG00000035654 #12 AOX1 (ENSOCUG00000013971) #13 ENSOCUG00000000547 #14 ENSOCUG00000037416 #15 KCTD18 (ENSOCUG00000011556) #16 SPATS2L (ENSOCUG00000011549) #17 ENSOCUG00000017946 #18 ENSOCUG00000035705 #19 ENSOCUG00000016464 #20 C2orf69 (ENSOCUG00000016473) #21 SATB2 (ENSOCUG00000009700) #22 PLCL1 (ENSOCUG00000013978) #23 BOLL (ENSOCUG00000013979) #24 MARS2 (ENSOCUG00000017798) #25 RFTN2 (ENSOCUG00000003993) #26 ENSOCUG00000005712 #27 HSPE1 (ENSOCUG00000010360) #28 HSPD1 (ENSOCUG00000012736) #29 COQ10B (ENSOCUG00000012735) #30 ENSOCUG00000000205 #31 ENSOCUG00000029492 #32 ENSOCUG00000012722 #33 ANKRD44 (ENSOCUG00000009183) #34 PGAP1 (ENSOCUG00000002192) #35 C2orf66 (ENSOCUG00000028999) #36 GTF3C3 (ENSOCUG00000000463) #37 Pika MODERN SPECIES 573 MAIP1 (ENSOPRG00000004142) #18 TYW5 (ENSOPRG00000004133) #19 C2orf69 (ENSOPRG00000004115) #21 SATB2 (ENSOPRG00000003979) #22 Rodentia ANCESTRAL SPECIES 14 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Rodentia_B ANCESTRAL SPECIES 12 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Kangaroo rat MODERN SPECIES 320 ENSDORG00000024018 Hycc2 (ENSDORG00000029531) Orc2 (ENSDORG00000007391) Nif3l1 (ENSDORG00000007390) Ppil3 (ENSDORG00000007389) #7 Clk1 (ENSDORG00000007388) #8 Bzw1 (ENSDORG00000029865) #9 Aox2 (ENSDORG00000026718) #10 Aox4 (ENSDORG00000026668) #11 Aox3 (ENSDORG00000025305) #11 Aox1 (ENSDORG00000004358) #13 Kctd18 (ENSDORG00000007817) #16 Spats2l (ENSDORG00000007816) #17 Maip1 (ENSDORG00000012569) #18 Tyw5 (ENSDORG00000012567) #19 Satb2 (ENSDORG00000001292) #22 Plcl1 (ENSDORG00000000485) #23 Boll (ENSDORG00000010791) #24 Mars2 (ENSDORG00000010789) #25 Rftn2 (ENSDORG00000008999) #26 Mob4 (ENSDORG00000023241) #27 ENSDORG00000011071 ##28 Hspd1 (ENSDORG00000011069) #29 Coq10b (ENSDORG00000025804) #30 Sf3b1 (ENSDORG00000002399) #32 ENSDORG00000029693 #34 ENSDORG00000024945 Pgap1 (ENSDORG00000000406) #35 Gtf3c3 (ENSDORG00000000403) #37 Hecw2 (ENSDORG00000014759) Stk17b (ENSDORG00000029601) Myomorpha ANCESTRAL SPECIES 10 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Lesser Egyptian jerboa MODERN SPECIES 52 ENSJJAG00000013473 Clk1 (ENSJJAG00000024354) #8 Bzw1 (ENSJJAG00000022065) #9 Aox2 (ENSJJAG00000011668) #10 Aox4 (ENSJJAG00000017799) #11 Aox1 (ENSJJAG00000019598) #13 ENSJJAG00000015058 #14 Kctd18 (ENSJJAG00000016069) #16 Spats2l (ENSJJAG00000019268) #17 ENSJJAG00000010933 ENSJJAG00000012063 Maip1 (ENSJJAG00000023816) #18 Tyw5 (ENSJJAG00000019361) #19 1700066M21Rik (ENSJJAG00000019976) #21 ENSJJAG00000023987 Satb2 (ENSJJAG00000019883) #22 ENSJJAG00000012932 Plcl1 (ENSJJAG00000024297) #23 Boll (ENSJJAG00000015508) #24 Mars2 (ENSJJAG00000023940) #25 Rftn2 (ENSJJAG00000002223) #26 ENSJJAG00000009865 #27 ENSJJAG00000012025 #28 ENSJJAG00000016713 ##29 Coq10b (ENSJJAG00000020646) #30 Sf3b1 (ENSJJAG00000010903) #32 ENSJJAG00000018305 Ankrd44 (ENSJJAG00000016107) #34 Pgap1 (ENSJJAG00000009924) #35 Gtf3c3 (ENSJJAG00000004649) #37 Hecw2 (ENSJJAG00000022806) Muroidea ANCESTRAL SPECIES 20 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 ENSGT00390000005285 Upper Galilee mountains blind mole rat MODERN SPECIES 417 ENSNGAG00000023509 ENSNGAG00000022183 Ppil3 (ENSNGAG00000014999) #7 ENSNGAG00000010384 #8 Bzw1 (ENSNGAG00000014200) #9 Aox2 (ENSNGAG00000021935) #10 Aox4 (ENSNGAG00000001220) #11 Aox3 (ENSNGAG00000019159) #11 Aox1 (ENSNGAG00000018103) #13 ENSNGAG00000017175 #14 Kctd18 (ENSNGAG00000011886) #16 Spats2l (ENSNGAG00000009131) #17 Maip1 (ENSNGAG00000013388) #18 Tyw5 (ENSNGAG00000022701) #19 1700066M21Rik (ENSNGAG00000015731) #21 Satb2 (ENSNGAG00000023604) #22 Plcl1 (ENSNGAG00000017912) #23 ENSNGAG00000014596 #24 Muroidea_A ANCESTRAL SPECIES 19 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 Murinae ANCESTRAL SPECIES 9 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 Mus ANCESTRAL SPECIES 5 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b.m.a #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 Mus_A ANCESTRAL SPECIES 5 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b.m.a #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493.c #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a.y.b #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929.b #37 Mus_B ANCESTRAL SPECIES 7 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b.p #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b.m.a #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493.c #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a.y.b.a.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929.b #37 Mus_C ANCESTRAL SPECIES 1 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b.p #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b.m.a #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493.c #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a.y.b.a.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929.b #37 ENSGT00390000005285 spretus MODERN SPECIES Hycc2 (MGP_SPRETEiJ_G0014973) Orc2 (MGP_SPRETEiJ_G0014972) Nif3l1 (MGP_SPRETEiJ_G0014971) Ppil3 (MGP_SPRETEiJ_G0014970) #7 Clk1 (MGP_SPRETEiJ_G0014969) #8 Bzw1 (MGP_SPRETEiJ_G0014968) #9 Aox2 (MGP_SPRETEiJ_G0014967) #10 Aox4 (MGP_SPRETEiJ_G0014966) #11 Aox3 (MGP_SPRETEiJ_G0014965) #11 Aox1 (MGP_SPRETEiJ_G0014964) #13 Sgo2a (MGP_SPRETEiJ_G0014963) #14 Kctd18 (MGP_SPRETEiJ_G0014962) #16 Spats2l (MGP_SPRETEiJ_G0014961) #17 Maip1 (MGP_SPRETEiJ_G0014960) #18 Tyw5 (MGP_SPRETEiJ_G0014959) #19 Satb2 (MGP_SPRETEiJ_G0014957) #22 Hsfy2 (MGP_SPRETEiJ_G0014956) Plcl1 (MGP_SPRETEiJ_G0014955) #23 MGP_SPRETEiJ_G0014954 #24 Mars2 (MGP_SPRETEiJ_G0014953) #25 Rftn2 (MGP_SPRETEiJ_G0014952) #26 Mob4 (MGP_SPRETEiJ_G0014951) #27 MGP_SPRETEiJ_G0014950 #28 MGP_SPRETEiJ_G0014949 ##29 MGP_SPRETEiJ_G0014948 #30 Sf3b1 (MGP_SPRETEiJ_G0014947) #32 Ankrd44 (MGP_SPRETEiJ_G0014946) #34 MGP_SPRETEiJ_G0014945 #35 Gtf3c3 (MGP_SPRETEiJ_G0014944) #37 Ccdc150 (MGP_SPRETEiJ_G0014943) Hecw2 (MGP_SPRETEiJ_G0014942) Steppe mouse MODERN SPECIES 84 Maip1 (ENSMSIG00000012877) #18 Tyw5 (ENSMSIG00000012899) #19 1700066M21Rik (ENSMSIG00000012910) #21 Satb2 (ENSMSIG00000012940) #22 Hsfy2 (ENSMSIG00000013021) Mouse MODERN SPECIES Orc2 (ENSMUSG00000026037) Nif3l1 (ENSMUSG00000026036) Ppil3 (ENSMUSG00000026035) #7 Clk1 (ENSMUSG00000026034) #8 Bzw1 (ENSMUSG00000051223) #9 Aox2 (ENSMUSG00000079554) #10 Aox4 (ENSMUSG00000038242) #11 Aox3 (ENSMUSG00000064294) #11 Aox1 (ENSMUSG00000063558) #13 Sgo2a (ENSMUSG00000026039) #14 Kctd18 (ENSMUSG00000054770) #16 Spats2l (ENSMUSG00000038305) #17 Maip1 (ENSMUSG00000025971) #18 Tyw5 (ENSMUSG00000048495) #19 1700066M21Rik (ENSMUSG00000038323) #21 Satb2 (ENSMUSG00000038331) #22 Hsfy2 (ENSMUSG00000045336) Plcl1 (ENSMUSG00000038349) #23 Boll (ENSMUSG00000025977) #24 Mars2 (ENSMUSG00000046994) #25 Rftn2 (ENSMUSG00000025978) #26 Mob4 (ENSMUSG00000025979) #27 Hspe1 (ENSMUSG00000073676) #28 Hspd1 (ENSMUSG00000025980) ##29 Coq10b (ENSMUSG00000025981) #30 Sf3b1 (ENSMUSG00000025982) #32 Ankrd44 (ENSMUSG00000052331) #34 Pgap1 (ENSMUSG00000073678) #35 Gm34066 (ENSMUSG00000109809) #36 Gtf3c3 (ENSMUSG00000041303) #37 Ccdc150 (ENSMUSG00000025983) Ryukyu mouse MODERN SPECIES Nif3l1 (MGP_CAROLIEiJ_G0014165) Ppil3 (MGP_CAROLIEiJ_G0014164) #7 Clk1 (MGP_CAROLIEiJ_G0014163) #8 Bzw1 (MGP_CAROLIEiJ_G0014162) #9 Aox2 (MGP_CAROLIEiJ_G0014161) #10 Aox4 (MGP_CAROLIEiJ_G0014160) #11 Aox3 (MGP_CAROLIEiJ_G0014159) #11 Aox1 (MGP_CAROLIEiJ_G0014158) #13 MGP_CAROLIEiJ_G0014157 #14 MGP_CAROLIEiJ_G0014156 #14 Kctd18 (MGP_CAROLIEiJ_G0014155) #16 Spats2l (MGP_CAROLIEiJ_G0014154) #17 Maip1 (MGP_CAROLIEiJ_G0014153) #18 Tyw5 (MGP_CAROLIEiJ_G0014152) #19 1700066M21Rik (MGP_CAROLIEiJ_G0014151) #21 Satb2 (MGP_CAROLIEiJ_G0014150) #22 Hsfy2 (MGP_CAROLIEiJ_G0014149) Plcl1 (MGP_CAROLIEiJ_G0014148) #23 Mars2 (MGP_CAROLIEiJ_G0014147) #25 Rftn2 (MGP_CAROLIEiJ_G0014146) #26 Mob4 (MGP_CAROLIEiJ_G0014145) #27 MGP_CAROLIEiJ_G0014144 #28 Hspd1 (MGP_CAROLIEiJ_G0014143) ##29 Coq10b (MGP_CAROLIEiJ_G0014142) #30 Sf3b1 (MGP_CAROLIEiJ_G0014141) #32 Ankrd44 (MGP_CAROLIEiJ_G0014140) #34 Pgap1 (MGP_CAROLIEiJ_G0014139) #35 MGP_CAROLIEiJ_G0014138 #37 Ccdc150 (MGP_CAROLIEiJ_G0014137) Hecw2 (MGP_CAROLIEiJ_G0014136) Stk17b (MGP_CAROLIEiJ_G0014135) Shrew mouse MODERN SPECIES 18 Hycc2 (MGP_PahariEiJ_G0027405) Orc2 (MGP_PahariEiJ_G0027404) Nif3l1 (MGP_PahariEiJ_G0027403) Ppil3 (MGP_PahariEiJ_G0027402) #7 Clk1 (MGP_PahariEiJ_G0027401) #8 Bzw1 (MGP_PahariEiJ_G0027400) #9 Aox4 (MGP_PahariEiJ_G0027399) #11 Aox3 (MGP_PahariEiJ_G0027398) #11 Aox1 (MGP_PahariEiJ_G0027397) #13 Sgo2a (MGP_PahariEiJ_G0027396) #14 Kctd18 (MGP_PahariEiJ_G0027395) #16 Spats2l (MGP_PahariEiJ_G0027394) #17 Maip1 (MGP_PahariEiJ_G0027393) #18 Tyw5 (MGP_PahariEiJ_G0027392) #19 1700066M21Rik (MGP_PahariEiJ_G0027391) #21 Satb2 (MGP_PahariEiJ_G0027390) #22 Hsfy2 (MGP_PahariEiJ_G0027389) Plcl1 (MGP_PahariEiJ_G0027388) #23 Boll (MGP_PahariEiJ_G0027387) #24 Mars2 (MGP_PahariEiJ_G0027386) #25 Rftn2 (MGP_PahariEiJ_G0027385) #26 MGP_PahariEiJ_G0027384 #27 MGP_PahariEiJ_G0027383 #28 MGP_PahariEiJ_G0027382 ##29 Coq10b (MGP_PahariEiJ_G0027381) #30 Ankrd44 (MGP_PahariEiJ_G0027379) #34 Pgap1 (MGP_PahariEiJ_G0027378) #35 Gtf3c3 (MGP_PahariEiJ_G0027377) #37 Ccdc150 (MGP_PahariEiJ_G0027376) Hecw2 (MGP_PahariEiJ_G0027375) Stk17b (MGP_PahariEiJ_G0027374) Rat MODERN SPECIES 19 Orc2 (ENSRNOG00000012558) Nif3l1 (ENSRNOG00000013446) Ppil3 (ENSRNOG00000013636) Clk1 (ENSRNOG00000025768) #8 Bzw1 (ENSRNOG00000013977) #9 Aox2 (ENSRNOG00000033923) #10 ENSRNOG00000068995 Aox3 (ENSRNOG00000014555) #11 Aox1 (ENSRNOG00000015354) #13 Sgo2 (ENSRNOG00000027035) #14 Kctd18 (ENSRNOG00000027091) #16 Spats2l (ENSRNOG00000016012) #17 Maip1 (ENSRNOG00000015983) #18 Tyw5 (ENSRNOG00000010100) #19 RGD1306941 (ENSRNOG00000010185) #21 Satb2 (ENSRNOG00000010188) #22 Hsfy2 (ENSRNOG00000038569) Plcl1 (ENSRNOG00000032659) #23 Boll (ENSRNOG00000054379) #24 Mars2 (ENSRNOG00000065339) #25 AABR07067762.1 (ENSRNOG00000055383) Rftn2 (ENSRNOG00000015594) #26 Mob4 (ENSRNOG00000014980) #27 Hspe1 (ENSRNOG00000051624) #28 Hspd1 (ENSRNOG00000014525) ##29 Coq10b (ENSRNOG00000014456) #30 Sf3b1 (ENSRNOG00000013516) #32 Tmem258b (ENSRNOG00000032740) Ankrd44 (ENSRNOG00000021384) #34 Pgap1 (ENSRNOG00000013388) #35 LOC686030 (ENSRNOG00000067303) #36 Cricetidae ANCESTRAL SPECIES 19 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b.w.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 Cricetinae ANCESTRAL SPECIES 3 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.b ##28 ENSGT00390000005727.a.b.b.w.a ##29 ENSGT00390000005727.a.b.b.w.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000155466 Chinese hamster chok1gshd MODERN SPECIES 1 Orc2 (ENSCGRG00001016911) ENSCGRG00001018137 Ppil3 (ENSCGRG00001021470) #7 Clk1 (ENSCGRG00001018410) #8 Bzw1 (ENSCGRG00001017178) #9 Aox2 (ENSCGRG00001017735) #10 Aox4 (ENSCGRG00001016089) #11 Aox3 (ENSCGRG00001016559) #11 Aox1 (ENSCGRG00001018485) #13 ENSCGRG00001016045 #14 Kctd18 (ENSCGRG00001016666) #16 Spats2l (ENSCGRG00001019123) #17 Maip1 (ENSCGRG00001018639) #18 Tyw5 (ENSCGRG00001015297) #19 1700066M21Rik (ENSCGRG00001016585) #21 Satb2 (ENSCGRG00001019669) #22 Hsfy2 (ENSCGRG00001009926) ENSCGRG00001010393 Plcl1 (ENSCGRG00001015676) #23 ENSCGRG00001009537 Boll (ENSCGRG00001020168) #24 Mars2 (ENSCGRG00001010364) #25 Rftn2 (ENSCGRG00001017788) #26 Mob4 (ENSCGRG00001024203) #27 ENSCGRG00001015345 ##28 HSPD1 (ENSCGRG00001021126) ##29 Coq10b (ENSCGRG00001015271) #30 Sf3b1 (ENSCGRG00001016990) #32 Ankrd44 (ENSCGRG00001018584) #34 Pgap1 (ENSCGRG00001016707) #35 Gtf3c3 (ENSCGRG00001014543) #37 Golden Hamster MODERN SPECIES 723 Aox1 (ENSMAUG00000014270) #13 ENSMAUG00000000248 #14 Kctd18 (ENSMAUG00000019856) #16 Spats2l (ENSMAUG00000016921) #17 Maip1 (ENSMAUG00000007424) #18 Tyw5 (ENSMAUG00000009449) #19 1700066M21Rik (ENSMAUG00000017438) #21 Satb2 (ENSMAUG00000008545) #22 Plcl1 (ENSMAUG00000003415) #23 Boll (ENSMAUG00000008224) #24 Mars2 (ENSMAUG00000017224) #25 Rftn2 (ENSMAUG00000014348) #26 ENSMAUG00000007042 #27 ENSMAUG00000017789 ##29 Coq10b (ENSMAUG00000010644) #30 Sf3b1 (ENSMAUG00000009071) #32 Ankrd44 (ENSMAUG00000019633) #34 Pgap1 (ENSMAUG00000018155) #35 Gtf3c3 (ENSMAUG00000018770) #37 Ccdc150 (ENSMAUG00000015624) Hecw2 (ENSMAUG00000011882) Stk17b (ENSMAUG00000018862) ENSMAUG00000020218 Cricetidae_B ANCESTRAL SPECIES 20 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000157452 ENSGT00940000158407 #23 ENSGT01030000235401 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT00390000006350.m.a.c.a.`b #28 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a.ab #28 ENSGT00390000005727.a.b.b.w.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 Prairie vole MODERN SPECIES 91 Hycc2 (ENSMOCG00000012367) Orc2 (ENSMOCG00000016158) Nif3l1 (ENSMOCG00000012327) ENSMOCG00000013096 #7 ENSMOCG00000005608 #8 Bzw1 (ENSMOCG00000008375) #9 Aox2 (ENSMOCG00000018237) #10 Aox4 (ENSMOCG00000015766) #11 Aox1 (ENSMOCG00000001195) #13 ENSMOCG00000012099 #14 Kctd18 (ENSMOCG00000018835) #16 Spats2l (ENSMOCG00000006136) #17 Maip1 (ENSMOCG00000008182) #18 Tyw5 (ENSMOCG00000018540) #19 1700066M21Rik (ENSMOCG00000018970) #21 ENSMOCG00000005756 #22 Hsfy2 (ENSMOCG00000013974) Plcl1 (ENSMOCG00000014862) #23 Boll (ENSMOCG00000022824) #24 Mars2 (ENSMOCG00000006676) #25 Rftn2 (ENSMOCG00000020060) #26 ENSMOCG00000000253 #28 Mob4 (ENSMOCG00000020652) #27 ENSMOCG00000002787 ##29 Coq10b (ENSMOCG00000012636) #30 Sf3b1 (ENSMOCG00000000455) #32 ENSMOCG00000021330 #34 Pgap1 (ENSMOCG00000013936) #35 Gtf3c3 (ENSMOCG00000019654) #37 Ccdc150 (ENSMOCG00000001399) Hecw2 (ENSMOCG00000012140) Northern American deer mouse MODERN SPECIES 4 Hycc2 (ENSPEMG00000014604) Orc2 (ENSPEMG00000010035) Nif3l1 (ENSPEMG00000023040) Ppil3 (ENSPEMG00000011585) #7 Clk1 (ENSPEMG00000022508) #8 ENSPEMG00000013940 #9 Aox2 (ENSPEMG00000022861) #10 ENSPEMG00000027085 #11 Aox1 (ENSPEMG00000000656) #13 ENSPEMG00000020091 #14 Kctd18 (ENSPEMG00000028635) #16 Spats2l (ENSPEMG00000020003) #17 Maip1 (ENSPEMG00000015287) #18 Tyw5 (ENSPEMG00000009506) #19 1700066M21Rik (ENSPEMG00000001657) #21 Satb2 (ENSPEMG00000013811) #22 Hsfy2 (ENSPEMG00000029057) Plcl1 (ENSPEMG00000001849) #23 ENSPEMG00000024520 Boll (ENSPEMG00000018168) #24 Mars2 (ENSPEMG00000008377) #25 Rftn2 (ENSPEMG00000000048) #26 Mob4 (ENSPEMG00000017361) #27 ENSPEMG00000029712 ENSPEMG00000010504 #28 Hspd1 (ENSPEMG00000015411) ##29 Coq10b (ENSPEMG00000005817) #30 Sf3b1 (ENSPEMG00000010699) #32 Ankrd44 (ENSPEMG00000016873) #34 Pgap1 (ENSPEMG00000008939) #35 ENSPEMG00000024521 Rodentia_A ANCESTRAL SPECIES 13 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00390000006350.m.a.c.b.b ##28 ENSGT00390000005727.a.b.a.b #29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000009468 #36 ENSGT00390000016929 #37 Sciuridae ANCESTRAL SPECIES 10 ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a #28 ENSGT00390000005727.a.b.b ##29 ENSGT00390000005727.a.b.a.b #29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000167666 Marmotini ANCESTRAL SPECIES 2 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b.v #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000012178.g.a.a ##31 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a.v #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Marmotini_b ANCESTRAL SPECIES 91 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000005581.b ENSGT00390000012178.g.a.a ##31 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.a.v #28 ENSGT00390000005727.a.b.b ##29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Squirrel MODERN SPECIES 106 SATB2 (ENSSTOG00000024964) #22 PLCL1 (ENSSTOG00000026164) #23 BOLL (ENSSTOG00000003536) #24 MARS2 (ENSSTOG00000015451) #25 RFTN2 (ENSSTOG00000015446) #26 MOB4 (ENSSTOG00000021024) #27 ENSSTOG00000031333 #28 ENSSTOG00000028470 ##29 COQ10B (ENSSTOG00000011048) #30 SF3B1 (ENSSTOG00000011034) #32 ANKRD44 (ENSSTOG00000012130) #34 PGAP1 (ENSSTOG00000010633) #35 GTF3C3 (ENSSTOG00000011894) #37 ENSSTOG00000014552 HECW2 (ENSSTOG00000015188) STK17B (ENSSTOG00000020599) Arctic ground squirrel MODERN SPECIES 210 ENSUPAG00010015923 #11 AOX1 (ENSUPAG00010015861) #13 SGO2 (ENSUPAG00010015843) #14 KCTD18 (ENSUPAG00010015819) #16 SPATS2L (ENSUPAG00010015777) #17 MAIP1 (ENSUPAG00010015760) #18 TYW5 (ENSUPAG00010015739) #19 C2orf69 (ENSUPAG00010015730) #21 FTCDNL1 (ENSUPAG00010015721) ENSUPAG00010015718 ##31 SATB2 (ENSUPAG00010015643) #22 PLCL1 (ENSUPAG00010015612) #23 BOLL (ENSUPAG00010015589) #24 MARS2 (ENSUPAG00010015585) #25 RFTN2 (ENSUPAG00010015580) #26 ENSUPAG00010015569 ##28 ENSUPAG00010015563 ##29 COQ10B (ENSUPAG00010015540) #30 SF3B1 (ENSUPAG00010015518) #32 Alpin marmot MODERN SPECIES 8 PPIL3 (ENSMMMG00000012069) #7 CLK1 (ENSMMMG00000012051) #8 ENSMMMG00000012026 #9 ENSMMMG00000011976 #10 ENSMMMG00000011959 ENSMMMG00000011912 #11 AOX1 (ENSMMMG00000011886) #13 ENSMMMG00000011877 #14 KCTD18 (ENSMMMG00000011839) #16 SPATS2L (ENSMMMG00000011689) #17 MAIP1 (ENSMMMG00000011679) #18 TYW5 (ENSMMMG00000011668) #19 C2orf69 (ENSMMMG00000011660) #21 FTCDNL1 (ENSMMMG00000011655) ENSMMMG00000011650 ##31 SATB2 (ENSMMMG00000011551) #22 ENSMMMG00000011481 PLCL1 (ENSMMMG00000011429) #23 BOLL (ENSMMMG00000011354) #24 MARS2 (ENSMMMG00000011347) #25 RFTN2 (ENSMMMG00000011220) #26 ENSMMMG00000011174 #27 ENSMMMG00000011161 #28 ENSMMMG00000011138 #29 ENSMMMG00000011101 #30 SF3B1 (ENSMMMG00000011081) #32 ANKRD44 (ENSMMMG00000010980) #34 PGAP1 (ENSMMMG00000010912) #35 GTF3C3 (ENSMMMG00000010874) #37 ENSMMMG00000010858 ENSMMMG00000010842 Eurasian red squirrel MODERN SPECIES 12 NIF3L1 (ENSSVLG00005004091) PPIL3 (ENSSVLG00005004070) #7 CLK1 (ENSSVLG00005004020) #8 BZW1 (ENSSVLG00005003945) #9 ENSSVLG00005003845 #10 ENSSVLG00005003767 #11 AOX1 (ENSSVLG00005003683) #13 SGO2 (ENSSVLG00005003633) #14 ENSSVLG00005003604 #16 SPATS2L (ENSSVLG00005003512) #17 MAIP1 (ENSSVLG00005003433) #18 TYW5 (ENSSVLG00005003405) #19 C2orf69 (ENSSVLG00005003387) #21 FTCDNL1 (ENSSVLG00005003343) ENSSVLG00005003317 SATB2 (ENSSVLG00005003278) #22 PLCL1 (ENSSVLG00005003227) #23 ENSSVLG00005003207 BOLL (ENSSVLG00005003123) #24 MARS2 (ENSSVLG00005003085) #25 RFTN2 (ENSSVLG00005003057) #26 MOB4 (ENSSVLG00005002989) #27 HSPE1 (ENSSVLG00005002940) #28 ENSSVLG00005002895 #29 ENSSVLG00005002862 #30 SF3B1 (ENSSVLG00005002801) #32 ANKRD44 (ENSSVLG00005002705) #34 PGAP1 (ENSSVLG00005002564) #35 C2orf66 (ENSSVLG00005002524) #36 ENSSVLG00005002519 GTF3C3 (ENSSVLG00005002487) #37 Hystricomorpha ANCESTRAL SPECIES 20 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.b.b ##28 ENSGT00390000005727.a.b.a.b #29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Hystricomorpha_a ANCESTRAL SPECIES 17 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.b.b ##28 ENSGT00390000005727.a.b.a.b #29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000167666 ENSGT00940000155466 Hystricomorpha_b ANCESTRAL SPECIES 24 ENSGT00390000011295.a ENSGT00390000015228 ENSGT00390000003590 ENSGT00940000153189.B #7 ENSGT00940000159722 #8 ENSGT00390000012561.b #9 ENSGT00950000183114.a.b.b.f.a.b #10 ENSGT00950000183114.a.b.b.f.a.a #11 ENSGT00950000183114.a.b.b.f.b #13 ENSGT00940000154107.b #14 ENSGT00530000064234 #16 ENSGT00390000001138.b #17 ENSGT00390000004145 #18 ENSGT00940000158493 #19 ENSGT00390000005550 #21 ENSGT00390000008096.B #22 ENSGT00940000158407 #23 ENSGT00530000063480.a #24 ENSGT00550000075136 #25 ENSGT00530000063609.a #26 ENSGT01050000244956.b.d #27 ENSGT00390000006350.m.a.c.b.b.a.b ##28 ENSGT00390000005727.a.b.a.b #29 ENSGT00940000155367 #30 ENSGT00390000018393 #32 ENSGT00950000182908.D #34 ENSGT00390000016484 #35 ENSGT00390000016929 #37 ENSGT00390000005285 ENSGT00940000155466 ENSGT00940000154014.b.b Degu MODERN SPECIES 66 ENSODEG00000007860 ORC2 (ENSODEG00000008853) NIF3L1 (ENSODEG00000008894) PPIL3 (ENSODEG00000007592) #7 CLK1 (ENSODEG00000009021) #8 ENSODEG00000019563 ENSODEG00000008411 #9 ENSODEG00000008135 #10 ENSODEG00000011138 #11 AOX1 (ENSODEG00000012914) #13 ENSODEG00000009211 #16 SPATS2L (ENSODEG00000009851) #17 MAIP1 (ENSODEG00000008914) #18 TYW5 (ENSODEG00000009836) #19 C2orf69 (ENSODEG00000008700) #21 SATB2 (ENSODEG00000008383) #22 PLCL1 (ENSODEG00000008918) #23 BOLL (ENSODEG00000008471) #24 RFTN2 (ENSODEG00000008704) #26 MOB4 (ENSODEG00000009609) #27 ENSODEG00000019874 ENSODEG00000011397 ##28 ENSODEG00000009026 #29 COQ10B (ENSODEG00000008396) #30 ENSODEG00000011153 #32 ENSODEG00000019820 ENSODEG00000008898 #34 ENSODEG00000008698 ENSODEG00000009525 PGAP1 (ENSODEG00000009932) #35 ENSODEG00000009843 #37 Long-tailed chinchilla MODERN SPECIES 110 HYCC2 (ENSCLAG00000011177) ORC2 (ENSCLAG00000013209) NIF3L1 (ENSCLAG00000013524) PPIL3 (ENSCLAG00000014050) #7 CLK1 (ENSCLAG00000011455) #8 BZW1 (ENSCLAG00000012079) #9 ENSCLAG00000011199 #10 ENSCLAG00000014402 #11 AOX1 (ENSCLAG00000011481) #13 ENSCLAG00000012456 #14 ENSCLAG00000014377 #16 SPATS2L (ENSCLAG00000013167) #17 MAIP1 (ENSCLAG00000011913) #18 TYW5 (ENSCLAG00000012009) #19 C2orf69 (ENSCLAG00000012813) #21 SATB2 (ENSCLAG00000016994) #22 PLCL1 (ENSCLAG00000016098) #23 BOLL (ENSCLAG00000017375) #24 MARS2 (ENSCLAG00000010386) #25 RFTN2 (ENSCLAG00000009821) #26 MOB4 (ENSCLAG00000010086) #27 ENSCLAG00000010686 ##28 HSPD1 (ENSCLAG00000011541) #29 COQ10B (ENSCLAG00000017377) #30 SF3B1 (ENSCLAG00000014767) #32 ANKRD44 (ENSCLAG00000015396) #34 PGAP1 (ENSCLAG00000011838) #35 GTF3C3 (ENSCLAG00000009827) #37 CCDC150 (ENSCLAG00000012365) HECW2 (ENSCLAG00000011628) STK17B (ENSCLAG00000012520) Guinea pig MODERN SPECIES 104 HYCC2 (ENSCPOG00000010108) ORC2 (ENSCPOG00000004552) NIF3L1 (ENSCPOG00000008572) PPIL3 (ENSCPOG00000008570) #7 CLK1 (ENSCPOG00000027067) #8 ENSCPOG00000010449 #9 ENSCPOG00000019962 #10 ENSCPOG00000033032 #11 Aox1 (ENSCPOG00000025955) #13 ENSCPOG00000002722 #14 ENSCPOG00000012077 #16 SPATS2L (ENSCPOG00000003190) #17 MAIP1 (ENSCPOG00000003800) #18 TYW5 (ENSCPOG00000035856) #19 C2orf69 (ENSCPOG00000009934) #21 SATB2 (ENSCPOG00000015198) #22 PLCL1 (ENSCPOG00000011478) #23 BOLL (ENSCPOG00000000390) #24 MARS2 (ENSCPOG00000025973) #25 RFTN2 (ENSCPOG00000010463) #26 MOB4 (ENSCPOG00000012746) #27 ENSCPOG00000027474 ##28 HSPD1 (ENSCPOG00000002588) #29 COQ10B (ENSCPOG00000002673) #30 SF3B1 (ENSCPOG00000009353) #32 ANKRD44 (ENSCPOG00000026494) #34 PGAP1 (ENSCPOG00000003177) #35 GTF3C3 (ENSCPOG00000006643) #37 CCDC150 (ENSCPOG00000031267) ENSCPOG00000040067 HECW2 (ENSCPOG00000008908) Naked mole-rat female MODERN SPECIES 22 PPIL3 (ENSHGLG00000035729) #7 Clk1 (ENSHGLG00000011322) #8 BZW1 (ENSHGLG00000011961) #9 ENSHGLG00000012205 #10 Aox4 (ENSHGLG00000012471) #11 AOX1 (ENSHGLG00000012876) #13 SGO2 (ENSHGLG00000015359) #14 ENSHGLG00000047532 ENSHGLG00000015370 #16 SPATS2L (ENSHGLG00000015420) #17 ENSHGLG00000017615 MAIP1 (ENSHGLG00000017548) #18 TYW5 (ENSHGLG00000017557) #19 C2orf69 (ENSHGLG00000040936) #21 ENSHGLG00000020697 SATB2 (ENSHGLG00000015892) #22 ENSHGLG00000043283 PLCL1 (ENSHGLG00000015970) #23 BOLL (ENSHGLG00000017562) #24 MARS2 (ENSHGLG00000049320) #25 RFTN2 (ENSHGLG00000017636) #26 MOB4 (ENSHGLG00000050196) #27 ENSHGLG00000042669 ##28 HSPD1 (ENSHGLG00000007927) #29 ENSHGLG00000038699 #30 ENSHGLG00000008285 #32 ANKRD44 (ENSHGLG00000008625) #34 ENSHGLG00000049153 ENSHGLG00000040344 ENSHGLG00000008965 #35 ENSHGLG00000042696 Tree shrew MODERN SPECIES 795 SATB2 (ENSTBEG00000002443) #22