Chordata	ANCESTRAL SPECIES																	ENSGT00940000153499 #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b #22
Gnathostomata	ANCESTRAL SPECIES	223																ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36
Euteleostomi	ANCESTRAL SPECIES	6	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Theria	ANCESTRAL SPECIES	22	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Glires	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Northern American deer mouse	MODERN SPECIES	20	Dpp8 (ENSPEMG00000024195) #7	Hacd3 (ENSPEMG00000008076) #8	Ints14 (ENSPEMG00000008550) #9	Slc24a1 (ENSPEMG00000022814) #10	Dennd4a (ENSPEMG00000022452) #11	ENSPEMG00000021125 #12	Megf11 (ENSPEMG00000017797) #13	Dis3l (ENSPEMG00000001213) #14	Tipin (ENSPEMG00000002370) #15	Map2k1 (ENSPEMG00000007282) #16	Snapc5 (ENSPEMG00000007852) #17	Rpl4 (ENSPEMG00000012064) #18	Zwilch (ENSPEMG00000014485) #19	Lctl (ENSPEMG00000016229) #20	Smad6 (ENSPEMG00000017040) #21	Smad3 (ENSPEMG00000028676) #22	Aagab (ENSPEMG00000018465) #23	ENSPEMG00000028831 #24	Iqch (ENSPEMG00000005753) #25	2300009A05Rik (ENSPEMG00000009306) #26	Map2k5 (ENSPEMG00000010361) #27	Skor1 (ENSPEMG00000010499) #28	Pias1 (ENSPEMG00000012119) #29	Calml4 (ENSPEMG00000012833) #30	Cln6 (ENSPEMG00000030484) #31	ENSPEMG00000000682 #32	Fem1b (ENSPEMG00000028410) #33	Itga11 (ENSPEMG00000014149) #34	Coro2b (ENSPEMG00000016326) #35	Anp32a (ENSPEMG00000017392) #36	ENSPEMG00000017757 #37
Prairie vole	MODERN SPECIES	13	Dpp8 (ENSMOCG00000018103) #7	Hacd3 (ENSMOCG00000004995) #8	Ints14 (ENSMOCG00000020364) #9	Slc24a1 (ENSMOCG00000002968) #10	Dennd4a (ENSMOCG00000008521) #11	Rab11a (ENSMOCG00000021138) #12	Megf11 (ENSMOCG00000003573) #13	Dis3l (ENSMOCG00000005278) #14	Tipin (ENSMOCG00000010343) #15	Map2k1 (ENSMOCG00000013072) #16	Snapc5 (ENSMOCG00000015348) #17	ENSMOCG00000021901 #18	Zwilch (ENSMOCG00000017159) #19	Lctl (ENSMOCG00000004744) #20	Smad6 (ENSMOCG00000014458) #21	Smad3 (ENSMOCG00000018490) #22	Aagab (ENSMOCG00000021340) #23	Iqch (ENSMOCG00000016873) #25	2300009A05Rik (ENSMOCG00000013991) #26	Map2k5 (ENSMOCG00000022058) #27	Skor1 (ENSMOCG00000018261) #28	ENSMOCG00000019235	Pias1 (ENSMOCG00000022074) #29	Calml4 (ENSMOCG00000018493) #30	Cln6 (ENSMOCG00000021992) #31	Fem1b (ENSMOCG00000005442) #33	Itga11 (ENSMOCG00000003119) #34	Coro2b (ENSMOCG00000011097) #35	ENSMOCG00000004428 #36	ENSMOCG00000014776 #36	Spesp1 (ENSMOCG00000016907) #37
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.kb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Golden Hamster	MODERN SPECIES	672	Dpp8 (ENSMAUG00000020059) #7	Hacd3 (ENSMAUG00000004278) #8	Ints14 (ENSMAUG00000020937) #9	Slc24a1 (ENSMAUG00000012813) #10	Dennd4a (ENSMAUG00000018527) #11	Rab11a (ENSMAUG00000018551) #12	Megf11 (ENSMAUG00000003129) #13	Dis3l (ENSMAUG00000008265) #14	Tipin (ENSMAUG00000012421) #15	Map2k1 (ENSMAUG00000011379) #16	Snapc5 (ENSMAUG00000008645) #17	Rpl4 (ENSMAUG00000018867) #18	Zwilch (ENSMAUG00000021210) #19	Lctl (ENSMAUG00000009957) #20	Smad6 (ENSMAUG00000009859) #21	Smad3 (ENSMAUG00000022258) #22	Aagab (ENSMAUG00000005383) #23	Iqch (ENSMAUG00000004333) #25	Map2k5 (ENSMAUG00000015370) #27	Skor1 (ENSMAUG00000020780) #28	Pias1 (ENSMAUG00000000785) #29	Calml4 (ENSMAUG00000015006) #30	Cln6 (ENSMAUG00000009546) #31	Itga11 (ENSMAUG00000002222) #34	Coro2b (ENSMAUG00000009618) #35	Anp32a (ENSMAUG00000000632) #36	Spesp1 (ENSMAUG00000008837) #37	Glce (ENSMAUG00000013447)	Paqr5 (ENSMAUG00000009377)	Kif23 (ENSMAUG00000009848)	ENSMAUG00000007063
Chinese hamster chok1gshd	MODERN SPECIES	284	Igdcc3 (ENSCGRG00001015803)	Igdcc4 (ENSCGRG00001004819)	Dpp8 (ENSCGRG00001024771) #7	Hacd3 (ENSCGRG00001019214) #8	Ints14 (ENSCGRG00001022061) #9	Slc24a1 (ENSCGRG00001023812) #10	Dennd4a (ENSCGRG00001019979) #11	Rab11a (ENSCGRG00001023313) #12	Megf11 (ENSCGRG00001019210) #13	Dis3l (ENSCGRG00001017825) #14	Tipin (ENSCGRG00001018146) #15	Snapc5 (ENSCGRG00001013968) #17	Zwilch (ENSCGRG00001018206) #19	Lctl (ENSCGRG00001017716) #20	Smad6 (ENSCGRG00001002733) #21	Smad3 (ENSCGRG00001013999) #22	Aagab (ENSCGRG00001020082) #23	Iqch (ENSCGRG00001006084) #25	ENSCGRG00001000811	2300009A05Rik (ENSCGRG00001009275) #26	Map2k5 (ENSCGRG00001024707) #27	Skor1 (ENSCGRG00001000300) #28	Pias1 (ENSCGRG00001018818) #29	Calml4 (ENSCGRG00001023410) #30	Cln6 (ENSCGRG00001016348) #31	Fem1b (ENSCGRG00001018487) #33	Itga11 (ENSCGRG00001016586) #34	Coro2b (ENSCGRG00001025051) #35	ENSCGRG00001022637 #36	Spesp1 (ENSCGRG00001015906) #37	Glce (ENSCGRG00001019156)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Mus	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Mus_B	ANCESTRAL SPECIES	3	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859.e.b #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Mus_C	ANCESTRAL SPECIES	8	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859.e.b #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
spretus	MODERN SPECIES	18	Hacd3 (MGP_SPRETEiJ_G0033489) #8	Ints14 (MGP_SPRETEiJ_G0033488) #9	Slc24a1 (MGP_SPRETEiJ_G0033487) #10	Dennd4a (MGP_SPRETEiJ_G0033486) #11	Rab11a (MGP_SPRETEiJ_G0033485) #12	Megf11 (MGP_SPRETEiJ_G0033484) #13	Dis3l (MGP_SPRETEiJ_G0033483) #14	Tipin (MGP_SPRETEiJ_G0033482) #15	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #16	Snapc5 (MGP_SPRETEiJ_G0033479) #17	Rpl4 (MGP_SPRETEiJ_G0033478) #18	Zwilch (MGP_SPRETEiJ_G0033477) #19	Lctl (MGP_SPRETEiJ_G0033476) #20	Smad6 (MGP_SPRETEiJ_G0033475) #21	Smad3 (MGP_SPRETEiJ_G0033474) #22	Aagab (MGP_SPRETEiJ_G0033473) #23	Iqch (MGP_SPRETEiJ_G0033472) #25	2300009A05Rik (MGP_SPRETEiJ_G0033471) #26	Map2k5 (MGP_SPRETEiJ_G0033470) #27	Skor1 (MGP_SPRETEiJ_G0033469) #28	Pias1 (MGP_SPRETEiJ_G0033468) #29	Calml4 (MGP_SPRETEiJ_G0033467) #30	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465) #31	Fem1b (MGP_SPRETEiJ_G0033464) #33	Itga11 (MGP_SPRETEiJ_G0033463) #34	Coro2b (MGP_SPRETEiJ_G0033462) #35	Anp32a (MGP_SPRETEiJ_G0033461) #36	Spesp1 (MGP_SPRETEiJ_G0033460) #37	Glce (MGP_SPRETEiJ_G0033459)
Steppe mouse	MODERN SPECIES	3365	Dennd4a (ENSMSIG00000004975) #11	Rab11a (ENSMSIG00000004938) #12	Megf11 (ENSMSIG00000004481) #13	Dis3l (ENSMSIG00000004353) #14	Tipin (ENSMSIG00000004296) #15	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #16	Snapc5 (ENSMSIG00000004231) #17	Rpl4 (ENSMSIG00000004124) #18	Zwilch (ENSMSIG00000003872) #19	Lctl (ENSMSIG00000003776) #20	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #21	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #22	Aagab (ENSMSIG00000003642) #23	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #25	2300009A05Rik (ENSMSIG00000002599) #26	Map2k5 (ENSMSIG00000002321) #27	Skor1 (ENSMSIG00000002179) #28	Pias1 (ENSMSIG00000002027) #29	ENSMSIG00000001996 #30	Cln6 (ENSMSIG00000001974) #31	Fem1b (ENSMSIG00000001951) #33	Itga11 (ENSMSIG00000001884) #34	Coro2b (ENSMSIG00000001799) #35	ENSMSIG00000001693 #36	Spesp1 (ENSMSIG00000001679) #37	Glce (ENSMSIG00000001614)
Mouse	MODERN SPECIES	18	Hacd3 (ENSMUSG00000033629) #8	Ints14 (ENSMUSG00000034263) #9	Slc24a1 (ENSMUSG00000034452) #10	Dennd4a (ENSMUSG00000053641) #11	Rab11a (ENSMUSG00000004771) #12	Megf11 (ENSMUSG00000036466) #13	Dis3l (ENSMUSG00000032396) #14	Tipin (ENSMUSG00000032397) #15	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #16	Snapc5 (ENSMUSG00000032398) #17	Rpl4 (ENSMUSG00000032399) #18	Zwilch (ENSMUSG00000032400) #19	Lctl (ENSMUSG00000032401) #20	Smad6 (ENSMUSG00000036867) #21	Smad3 (ENSMUSG00000032402) #22	Aagab (ENSMUSG00000037257) #23	Iqch (ENSMUSG00000037801) #25	2300009A05Rik (ENSMUSG00000032403) #26	Map2k5 (ENSMUSG00000058444) #27	Skor1 (ENSMUSG00000022245) #28	Pias1 (ENSMUSG00000032405) #29	Calml4 (ENSMUSG00000032246) #30	Cln6 (ENSMUSG00000032245) #31	Fem1b (ENSMUSG00000032244) #33	Itga11 (ENSMUSG00000032243) #34	Coro2b (ENSMUSG00000041729) #35	Anp32a (ENSMUSG00000032249) #36	Spesp1 (ENSMUSG00000046846) #37	Glce (ENSMUSG00000032252)	Paqr5 (ENSMUSG00000032278)
Ryukyu mouse	MODERN SPECIES	18	Hacd3 (MGP_CAROLIEiJ_G0032350) #8	Ints14 (MGP_CAROLIEiJ_G0032349) #9	Slc24a1 (MGP_CAROLIEiJ_G0032348) #10	Dennd4a (MGP_CAROLIEiJ_G0032347) #11	Rab11a (MGP_CAROLIEiJ_G0032346) #12	Megf11 (MGP_CAROLIEiJ_G0032345) #13	Dis3l (MGP_CAROLIEiJ_G0032344) #14	Tipin (MGP_CAROLIEiJ_G0032343) #15	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #16	Snapc5 (MGP_CAROLIEiJ_G0032340) #17	Rpl4 (MGP_CAROLIEiJ_G0032339) #18	Zwilch (MGP_CAROLIEiJ_G0032338) #19	Lctl (MGP_CAROLIEiJ_G0032337) #20	Smad6 (MGP_CAROLIEiJ_G0032336) #21	Smad3 (MGP_CAROLIEiJ_G0032335) #22	Aagab (MGP_CAROLIEiJ_G0032334) #23	Iqch (MGP_CAROLIEiJ_G0032333) #25	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #26	Map2k5 (MGP_CAROLIEiJ_G0032331) #27	Skor1 (MGP_CAROLIEiJ_G0032330) #28	Pias1 (MGP_CAROLIEiJ_G0032329) #29	Calml4 (MGP_CAROLIEiJ_G0032328) #30	Cln6 (MGP_CAROLIEiJ_G0032327) #31	Fem1b (MGP_CAROLIEiJ_G0032326) #33	Itga11 (MGP_CAROLIEiJ_G0032325) #34	Coro2b (MGP_CAROLIEiJ_G0032324) #35	Anp32a (MGP_CAROLIEiJ_G0032323) #36	Spesp1 (MGP_CAROLIEiJ_G0032322) #37	Glce (MGP_CAROLIEiJ_G0032321)	Paqr5 (MGP_CAROLIEiJ_G0032320)
Shrew mouse	MODERN SPECIES	1	Igdcc4 (MGP_PahariEiJ_G0015217)	Dpp8 (MGP_PahariEiJ_G0015216) #7	Hacd3 (MGP_PahariEiJ_G0015215) #8	Ints14 (MGP_PahariEiJ_G0015214) #9	Slc24a1 (MGP_PahariEiJ_G0015213) #10	Dennd4a (MGP_PahariEiJ_G0015212) #11	Rab11a (MGP_PahariEiJ_G0015211) #12	Megf11 (MGP_PahariEiJ_G0015210) #13	Dis3l (MGP_PahariEiJ_G0015209) #14	Tipin (MGP_PahariEiJ_G0015208) #15	Map2k1 (MGP_PahariEiJ_G0015207) #16	Snapc5 (MGP_PahariEiJ_G0015206) #17	Rpl4 (MGP_PahariEiJ_G0015205) #18	Zwilch (MGP_PahariEiJ_G0015204) #19	Smad6 (MGP_PahariEiJ_G0015202) #21	Smad3 (MGP_PahariEiJ_G0015201) #22	Aagab (MGP_PahariEiJ_G0015200) #23	Iqch (MGP_PahariEiJ_G0015199) #25	2300009A05Rik (MGP_PahariEiJ_G0015198) #26	Map2k5 (MGP_PahariEiJ_G0015197) #27	Skor1 (MGP_PahariEiJ_G0015196) #28	Pias1 (MGP_PahariEiJ_G0015195) #29	Calml4 (MGP_PahariEiJ_G0015194) #30	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192) #33	Itga11 (MGP_PahariEiJ_G0015191) #34	Coro2b (MGP_PahariEiJ_G0015190) #35	Anp32a (MGP_PahariEiJ_G0015189) #36	Spesp1 (MGP_PahariEiJ_G0015188) #37	Glce (MGP_PahariEiJ_G0015187)	Paqr5 (MGP_PahariEiJ_G0015186)
Rat	MODERN SPECIES	18	Dpp8 (ENSRNOG00000019105) #7	Hacd3 (ENSRNOG00000030232) #8	Ints14 (ENSRNOG00000012469) #9	Slc24a1 (ENSRNOG00000052051) #10	Dennd4a (ENSRNOG00000011739) #11	LOC120094392 (ENSRNOG00000071140)	Rab11a (ENSRNOG00000011302) #12	Megf11 (ENSRNOG00000010634) #13	Dis3l (ENSRNOG00000010537) #14	Tipin (ENSRNOG00000043068) #15	Map2k1 (ENSRNOG00000010176) #16	Rpl4 (ENSRNOG00000009378) #18	Zwilch (ENSRNOG00000009303) #19	Lctl (ENSRNOG00000009193) #20	Smad6 (ENSRNOG00000009173) #21	Smad3 (ENSRNOG00000008620) #22	Aagab (ENSRNOG00000008424) #23	Iqch (ENSRNOG00000008353) #25	C8h15orf61 (ENSRNOG00000008340) #26	AC132740.1 (ENSRNOG00000054780)	Map2k5 (ENSRNOG00000007926) #27	Skor1 (ENSRNOG00000013959) #28	Pias1 (ENSRNOG00000034272) #29	Calml4 (ENSRNOG00000038202) #30	Cln6 (ENSRNOG00000007164) #31	Fem1b (ENSRNOG00000007077) #33	Itga11 (ENSRNOG00000006723) #34	Coro2b (ENSRNOG00000015257) #35	Anp32a (ENSRNOG00000014846) #36	Spesp1 (ENSRNOG00000025359) #37	Glce (ENSRNOG00000025372)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Hacd3 (ENSNGAG00000016924) #8	Ints14 (ENSNGAG00000007105) #9	Slc24a1 (ENSNGAG00000010674) #10	ENSNGAG00000022619 #11	Rab11a (ENSNGAG00000013726) #12	Megf11 (ENSNGAG00000011352) #13	Dis3l (ENSNGAG00000017008) #14	Tipin (ENSNGAG00000018237) #15	Map2k1 (ENSNGAG00000006894) #16	Snapc5 (ENSNGAG00000006133) #17	ENSNGAG00000006653 #18	Zwilch (ENSNGAG00000016626) #19	Lctl (ENSNGAG00000012911) #20	Smad6 (ENSNGAG00000021223) #21	ENSNGAG00000022756	Smad3 (ENSNGAG00000023535) #22	ENSNGAG00000010708 #23	Iqch (ENSNGAG00000019505) #25	2300009A05Rik (ENSNGAG00000004715) #26	Map2k5 (ENSNGAG00000011076) #27	Skor1 (ENSNGAG00000020060) #28	Pias1 (ENSNGAG00000022735) #29	Calml4 (ENSNGAG00000016088) #30	Cln6 (ENSNGAG00000023832) #31	ENSNGAG00000021620 #33	Itga11 (ENSNGAG00000024101) #34	Coro2b (ENSNGAG00000024331) #35	ENSNGAG00000017524 #36	ENSNGAG00000005322 #36	Spesp1 (ENSNGAG00000012498) #37	Glce (ENSNGAG00000014759)
Lesser Egyptian jerboa	MODERN SPECIES	92	Hacd3 (ENSJJAG00000016608) #8	Ints14 (ENSJJAG00000005359) #9	Slc24a1 (ENSJJAG00000009344) #10	ENSJJAG00000012113 #11	ENSJJAG00000015445 #12	Megf11 (ENSJJAG00000023890) #13	ENSJJAG00000019234	Dis3l (ENSJJAG00000016147) #14	Tipin (ENSJJAG00000017947) #15	Map2k1 (ENSJJAG00000021452) #16	Snapc5 (ENSJJAG00000022013) #17	ENSJJAG00000013677 #18	Zwilch (ENSJJAG00000010189) #19	Lctl (ENSJJAG00000013579) #20	Smad6 (ENSJJAG00000019623) #21	Smad3 (ENSJJAG00000021414) #22	ENSJJAG00000018312 #23	Iqch (ENSJJAG00000024416) #25	2300009A05Rik (ENSJJAG00000019436) #26	Map2k5 (ENSJJAG00000024208) #27	Skor1 (ENSJJAG00000003624) #28	ENSJJAG00000019728 #29	Calml4 (ENSJJAG00000014113) #30	Cln6 (ENSJJAG00000024405) #31	Fem1b (ENSJJAG00000018686) #33	Itga11 (ENSJJAG00000007244) #34	Coro2b (ENSJJAG00000003058) #35	Anp32a (ENSJJAG00000019278) #36
Kangaroo rat	MODERN SPECIES	330	Ints14 (ENSDORG00000009309) #9	Slc24a1 (ENSDORG00000007185) #10	Dennd4a (ENSDORG00000002146) #11	ENSDORG00000028034 #12	ENSDORG00000026125	Megf11 (ENSDORG00000001008) #13	Dis3l (ENSDORG00000014909) #14	Tipin (ENSDORG00000028988) #15	Map2k1 (ENSDORG00000001301) #16	Snapc5 (ENSDORG00000030051) #17	Rpl4 (ENSDORG00000016287) #18	Zwilch (ENSDORG00000016288) #19	Lctl (ENSDORG00000016291) #20	Smad6 (ENSDORG00000028234) #21	ENSDORG00000026894	Smad3 (ENSDORG00000029949) #22	ENSDORG00000026611 #23	Iqch (ENSDORG00000006468) #25	2300009A05Rik (ENSDORG00000028687) #26	Map2k5 (ENSDORG00000005673) #27	Skor1 (ENSDORG00000005677) #28
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.vb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Naked mole-rat female	MODERN SPECIES	19	INTS14 (ENSHGLG00000010722) #9	SLC24A1 (ENSHGLG00000008872) #10	DENND4A (ENSHGLG00000009810) #11	ENSHGLG00000044288	RAB11A (ENSHGLG00000048551) #12	MEGF11 (ENSHGLG00000011012) #13	ENSHGLG00000007770 #14	ENSHGLG00000005971 #15	ENSHGLG00000048822	ENSHGLG00000010036 #16	ENSHGLG00000040904 #17	ENSHGLG00000008054 #18	ZWILCH (ENSHGLG00000016059) #19	LCTL (ENSHGLG00000015669) #20	SMAD6 (ENSHGLG00000008453) #21	SMAD3 (ENSHGLG00000048787) #22	AAGAB (ENSHGLG00000038898) #23	ENSHGLG00000026352 #25	C15orf61 (ENSHGLG00000038870) #26	MAP2K5 (ENSHGLG00000006627) #27	SKOR1 (ENSHGLG00000017297) #28	Pias1 (ENSHGLG00000019002) #29	Calml4 (ENSHGLG00000018794) #30	CLN6 (ENSHGLG00000017958) #31	FEM1B (ENSHGLG00000017948) #33	ITGA11 (ENSHGLG00000007233) #34	CORO2B (ENSHGLG00000015273) #35	ENSHGLG00000013229 #36	SPESP1 (ENSHGLG00000046924) #37	GLCE (ENSHGLG00000033764)	PAQR5 (ENSHGLG00000009727)
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.vb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Guinea pig	MODERN SPECIES		CIAO2A (ENSCPOG00000033175)	DAPK2 (ENSCPOG00000000890)	ENSCPOG00000030019	ENSCPOG00000007146	PTP4A1 (ENSCPOG00000032105)	LGSN (ENSCPOG00000008736)	KHDRBS2 (ENSCPOG00000025621)	PRIM2 (ENSCPOG00000003912)	ENSCPOG00000035048	RAB23 (ENSCPOG00000030218)	BAG2 (ENSCPOG00000040302)	ZNF451 (ENSCPOG00000002491)	BEND6 (ENSCPOG00000015453)	DST (ENSCPOG00000005092)	SMAD6 (ENSCPOG00000001535) #21	SMAD3 (ENSCPOG00000021314) #22	AAGAB (ENSCPOG00000000965) #23	C15orf61 (ENSCPOG00000022542) #26	MAP2K5 (ENSCPOG00000000970) #27	SKOR1 (ENSCPOG00000012665) #28	PIAS1 (ENSCPOG00000007278) #29	CALML4 (ENSCPOG00000033517) #30	CLN6 (ENSCPOG00000007282) #31	FEM1B (ENSCPOG00000031057) #33	ITGA11 (ENSCPOG00000012877) #34	CORO2B (ENSCPOG00000023117) #35	ENSCPOG00000008829 #36	GLCE (ENSCPOG00000020608)
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.vb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Degu	MODERN SPECIES	67	DPP8 (ENSODEG00000016356) #7	HACD3 (ENSODEG00000016975) #8	INTS14 (ENSODEG00000017006) #9	SLC24A1 (ENSODEG00000016047) #10	ENSODEG00000016544 #11	ENSODEG00000016435	ENSODEG00000016878 #12	MEGF11 (ENSODEG00000015967) #13	DIS3L (ENSODEG00000015811) #14	MAP2K1 (ENSODEG00000016739) #16	ENSODEG00000016495 #18	ZWILCH (ENSODEG00000016374) #19	LCTL (ENSODEG00000016271) #20	ENSODEG00000020317	SMAD6 (ENSODEG00000016272) #21	SMAD3 (ENSODEG00000015739) #22	ENSODEG00000015886 #23	ENSODEG00000020336	IQCH (ENSODEG00000016134) #25	C15orf61 (ENSODEG00000016721) #26	ENSODEG00000016511	MAP2K5 (ENSODEG00000015607) #27	SKOR1 (ENSODEG00000015903) #28	PIAS1 (ENSODEG00000016418) #29	CALML4 (ENSODEG00000015441) #30	CLN6 (ENSODEG00000015888) #31	ENSODEG00000016475 #33	ENSODEG00000020366	ITGA11 (ENSODEG00000015700) #34	CORO2B (ENSODEG00000016099) #35	ENSODEG00000016071 #36
Long-tailed chinchilla	MODERN SPECIES	157	DPP8 (ENSCLAG00000014937) #7	HACD3 (ENSCLAG00000010725) #8	INTS14 (ENSCLAG00000009395) #9	SLC24A1 (ENSCLAG00000013073) #10	DENND4A (ENSCLAG00000007003) #11	RAB11A (ENSCLAG00000007435) #12	MEGF11 (ENSCLAG00000013146) #13	DIS3L (ENSCLAG00000005741) #14	TIPIN (ENSCLAG00000004924) #15	MAP2K1 (ENSCLAG00000013042) #16	SNAPC5 (ENSCLAG00000011660) #17	RPL4 (ENSCLAG00000010827) #18	ZWILCH (ENSCLAG00000010124) #19	LCTL (ENSCLAG00000004564) #20	ENSCLAG00000005550 #21	SMAD3 (ENSCLAG00000005027) #22	AAGAB (ENSCLAG00000008364) #23	IQCH (ENSCLAG00000011031) #25	C15orf61 (ENSCLAG00000008894) #26	MAP2K5 (ENSCLAG00000005277) #27	SKOR1 (ENSCLAG00000007488) #28	PIAS1 (ENSCLAG00000008129) #29	CALML4 (ENSCLAG00000008707) #30	CLN6 (ENSCLAG00000007035) #31	FEM1B (ENSCLAG00000004834) #33	ITGA11 (ENSCLAG00000006568) #34	CORO2B (ENSCLAG00000006658) #35	ENSCLAG00000010256 #36	SPESP1 (ENSCLAG00000009992) #37	GLCE (ENSCLAG00000009057)	PAQR5 (ENSCLAG00000008730)
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Alpin marmot	MODERN SPECIES	7	SLC24A1 (ENSMMMG00000006817) #10	DENND4A (ENSMMMG00000006769) #11	ENSMMMG00000006762	RAB11A (ENSMMMG00000006747) #12	MEGF11 (ENSMMMG00000006311) #13	DIS3L (ENSMMMG00000006220) #14	TIPIN (ENSMMMG00000006196) #15	MAP2K1 (ENSMMMG00000006173) #16	SNAPC5 (ENSMMMG00000006163) #17	RPL4 (ENSMMMG00000006109) #18	ENSMMMG00000006104	ZWILCH (ENSMMMG00000006077) #19	LCTL (ENSMMMG00000006061) #20	SMAD6 (ENSMMMG00000006032) #21	ENSMMMG00000006027	SMAD3 (ENSMMMG00000005977) #22	AAGAB (ENSMMMG00000005970) #23	IQCH (ENSMMMG00000005869) #25	ENSMMMG00000005844	MAP2K5 (ENSMMMG00000005809) #27	SKOR1 (ENSMMMG00000005773) #28	PIAS1 (ENSMMMG00000005733) #29	CALML4 (ENSMMMG00000005699) #30	CLN6 (ENSMMMG00000005687) #31	ENSMMMG00000005671 #33	ITGA11 (ENSMMMG00000005622) #34	CORO2B (ENSMMMG00000005600) #35	ENSMMMG00000005555 #36	SPESP1 (ENSMMMG00000005545) #37	NOX5 (ENSMMMG00000005478)	GLCE (ENSMMMG00000005432)
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Arctic ground squirrel	MODERN SPECIES	397									MAP2K1 (ENSUPAG00010018149) #16	SNAPC5 (ENSUPAG00010018142) #17	RPL4 (ENSUPAG00010018119) #18	ZWILCH (ENSUPAG00010018079) #19	LCTL (ENSUPAG00010018063) #20	SMAD6 (ENSUPAG00010018050) #21	ENSUPAG00010018048	SMAD3 (ENSUPAG00010018010) #22	AAGAB (ENSUPAG00010018001) #23	IQCH (ENSUPAG00010017914) #25	C15orf61 (ENSUPAG00010017904) #26	MAP2K5 (ENSUPAG00010017819) #27	SKOR1 (ENSUPAG00010017792) #28	ENSUPAG00010017781	PIAS1 (ENSUPAG00010017772) #29	CALML4 (ENSUPAG00010017747) #30	CLN6 (ENSUPAG00010017740) #31	FEM1B (ENSUPAG00010017736) #33	ITGA11 (ENSUPAG00010017705) #34
Squirrel	MODERN SPECIES	71	ENSSTOG00000025872	HACD3 (ENSSTOG00000002211) #8	INTS14 (ENSSTOG00000002217) #9	SLC24A1 (ENSSTOG00000002228) #10	DENND4A (ENSSTOG00000026966) #11	RAB11A (ENSSTOG00000015255) #12	MEGF11 (ENSSTOG00000015258) #13	DIS3L (ENSSTOG00000009158) #14	TIPIN (ENSSTOG00000009182) #15	MAP2K1 (ENSSTOG00000009190) #16	SNAPC5 (ENSSTOG00000009201) #17	RPL4 (ENSSTOG00000009221) #18	ZWILCH (ENSSTOG00000009607) #19	LCTL (ENSSTOG00000028073) #20	SMAD6 (ENSSTOG00000000696) #21	SMAD3 (ENSSTOG00000010286) #22	AAGAB (ENSSTOG00000010291) #23	IQCH (ENSSTOG00000010299) #25	C15orf61 (ENSSTOG00000010312) #26	MAP2K5 (ENSSTOG00000010318) #27	SKOR1 (ENSSTOG00000002675) #28	PIAS1 (ENSSTOG00000015532) #29	CALML4 (ENSSTOG00000015539) #30	CLN6 (ENSSTOG00000015540) #31	FEM1B (ENSSTOG00000015544) #33	ITGA11 (ENSSTOG00000015545) #34	CORO2B (ENSSTOG00000015918) #35	ENSSTOG00000015929 #36	GLCE (ENSSTOG00000019509)	PAQR5 (ENSSTOG00000000507)	KIF23 (ENSSTOG00000022809)
Eurasian red squirrel	MODERN SPECIES	11	HACD3 (ENSSVLG00005023708) #8	INTS14 (ENSSVLG00005023820) #9	SLC24A1 (ENSSVLG00005023979) #10	DENND4A (ENSSVLG00005024160) #11	RAB11A (ENSSVLG00005024246) #12	MEGF11 (ENSSVLG00005024351) #13	DIS3L (ENSSVLG00005024622) #14	TIPIN (ENSSVLG00005024668) #15	MAP2K1 (ENSSVLG00005024707) #16	SNAPC5 (ENSSVLG00005024729) #17	ENSSVLG00005024744 #18	ZWILCH (ENSSVLG00005024833) #19	LCTL (ENSSVLG00005024912) #20	SMAD6 (ENSSVLG00005024946) #21	ENSSVLG00005024968	SMAD3 (ENSSVLG00005024991) #22	AAGAB (ENSSVLG00005025018) #23	IQCH (ENSSVLG00005025085) #25	C15orf61 (ENSSVLG00005006592) #26	MAP2K5 (ENSSVLG00005006656) #27	SKOR1 (ENSSVLG00005006917) #28	PIAS1 (ENSSVLG00005007019) #29	CALML4 (ENSSVLG00005007109) #30	CLN6 (ENSSVLG00005007215) #31	FEM1B (ENSSVLG00005007302) #33	ITGA11 (ENSSVLG00005007326) #34	CORO2B (ENSSVLG00005007364) #35	ENSSVLG00005007452 #36	ENSSVLG00005007513	SPESP1 (ENSSVLG00005007565) #37	NOX5 (ENSSVLG00005007597)
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00950000183167.a.b.a	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d.j	ENSGT00950000183129.b.b	ENSGT00940000154201.a.b
Rabbit	MODERN SPECIES	8	INTS14 (ENSOCUG00000007520) #9	ENSOCUG00000027844 #10	DENND4A (ENSOCUG00000007953) #11	RAB11A (ENSOCUG00000014755) #12	MEGF11 (ENSOCUG00000014760) #13	DIS3L (ENSOCUG00000002206) #14	TIPIN (ENSOCUG00000002212) #15	ENSOCUG00000023060	MAP2K1 (ENSOCUG00000008782) #16	SNAPC5 (ENSOCUG00000039231) #17	ENSOCUG00000008794 #18	ZWILCH (ENSOCUG00000008800) #19	LCTL (ENSOCUG00000021771) #20	ENSOCUG00000006134 #21	ENSOCUG00000014186	SMAD3 (ENSOCUG00000029601) #22	ENSOCUG00000039204	AAGAB (ENSOCUG00000006644) #23	IQCH (ENSOCUG00000006647) #25	MAP2K5 (ENSOCUG00000009024) #27	PIAS1 (ENSOCUG00000000618) #29	CLN6 (ENSOCUG00000017533) #31	FEM1B (ENSOCUG00000026586) #33	ITGA11 (ENSOCUG00000017726) #34	ENSOCUG00000036279	MYO9A (ENSOCUG00000017425)	SENP8 (ENSOCUG00000026054)	GRAMD2A (ENSOCUG00000006107)	ENSOCUG00000006119	PARP6 (ENSOCUG00000004374)	CELF6 (ENSOCUG00000021663)
Pika	MODERN SPECIES	1524														IQCH (ENSOPRG00000014936) #25	SMAD6 (ENSOPRG00000014974) #21	SMAD3 (ENSOPRG00000014996) #22	AAGAB (ENSOPRG00000015012) #23
Tree shrew	MODERN SPECIES	3464																SMAD3 (ENSTBEG00000003884) #22	AAGAB (ENSTBEG00000004459) #23	IQCH (ENSTBEG00000005168) #25
Primates	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Mouse lemur	MODERN SPECIES	22	ENSMICG00000034025	ENSMICG00000028970	ENSMICG00000044235	DENND4A (ENSMICG00000004000) #11	RAB11A (ENSMICG00000041504) #12	ENSMICG00000035335	MEGF11 (ENSMICG00000004354) #13	DIS3L (ENSMICG00000004374) #14	TIPIN (ENSMICG00000004386) #15	MAP2K1 (ENSMICG00000004393) #16	SNAPC5 (ENSMICG00000004401) #17	RPL4 (ENSMICG00000004419) #18	ZWILCH (ENSMICG00000004429) #19	LCTL (ENSMICG00000004455) #20	SMAD6 (ENSMICG00000035205) #21	SMAD3 (ENSMICG00000006119) #22	AAGAB (ENSMICG00000044554) #23	IQCH (ENSMICG00000006127) #25	ENSMICG00000041604	ENSMICG00000005597	BLOC1S6 (ENSMICG00000005595)	SLC30A4 (ENSMICG00000005588)	C15orf48 (ENSMICG00000033332)	SPATA5L1 (ENSMICG00000035916)	GATM (ENSMICG00000005565)	ENSMICG00000032669	SLC28A2 (ENSMICG00000009242)	SHF (ENSMICG00000033037)	DUOX1 (ENSMICG00000009207)	DUOXA1 (ENSMICG00000009195)	DUOXA2 (ENSMICG00000048012)
Lemuriformes_a	ANCESTRAL SPECIES	197																ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043	ENSGT00940000158844
Coquerels sifaka	MODERN SPECIES	733																SMAD3 (ENSPCOG00000023000) #22	AAGAB (ENSPCOG00000016985) #23	IQCH (ENSPCOG00000021949) #25	C15orf61 (ENSPCOG00000018275) #26	MAP2K5 (ENSPCOG00000020293) #27	SKOR1 (ENSPCOG00000016399) #28
Greater bamboo lemur	MODERN SPECIES	313														SMAD6 (ENSPSMG00000000845) #21	ENSPSMG00000000854	SMAD3 (ENSPSMG00000001058) #22	AAGAB (ENSPSMG00000001327) #23	IQCH (ENSPSMG00000001397) #25	C15orf61 (ENSPSMG00000001411) #26	MAP2K5 (ENSPSMG00000001626) #27	SKOR1 (ENSPSMG00000001884) #28	ENSPSMG00000001902	PIAS1 (ENSPSMG00000001932) #29	CALML4 (ENSPSMG00000001943) #30	CLN6 (ENSPSMG00000002045) #31	FEM1B (ENSPSMG00000002150) #33	ITGA11 (ENSPSMG00000002246) #34	CORO2B (ENSPSMG00000002320) #35	ENSPSMG00000002406 #36	SPESP1 (ENSPSMG00000002424) #37	GLCE (ENSPSMG00000002447)
Bushbaby	MODERN SPECIES	126	SLC24A1 (ENSOGAG00000013674) #10	DENND4A (ENSOGAG00000013678) #11	RAB11A (ENSOGAG00000007642) #12	MEGF11 (ENSOGAG00000007644) #13	ENSOGAG00000034665	DIS3L (ENSOGAG00000024086) #14	ENSOGAG00000028488 #15	MAP2K1 (ENSOGAG00000015876) #16	SNAPC5 (ENSOGAG00000015881) #17	ENSOGAG00000015884 #18	ZWILCH (ENSOGAG00000015886) #19	LCTL (ENSOGAG00000015893) #20	SMAD6 (ENSOGAG00000015387) #21	ENSOGAG00000034467	ENSOGAG00000029245	SMAD3 (ENSOGAG00000014217) #22	AAGAB (ENSOGAG00000014219) #23	IQCH (ENSOGAG00000014224) #25	ENSOGAG00000028206	C15orf61 (ENSOGAG00000027440) #26	MAP2K5 (ENSOGAG00000002480) #27	SKOR1 (ENSOGAG00000025983) #28	PIAS1 (ENSOGAG00000014134) #29	CALML4 (ENSOGAG00000014140) #30	CLN6 (ENSOGAG00000014142) #31	FEM1B (ENSOGAG00000014143) #33	ITGA11 (ENSOGAG00000014144) #34	CORO2B (ENSOGAG00000026008) #35	ENSOGAG00000003058 #36	GLCE (ENSOGAG00000029673)	PAQR5 (ENSOGAG00000012036)
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Tarsier	MODERN SPECIES	1316																SMAD3 (ENSTSYG00000025697) #22	AAGAB (ENSTSYG00000010466) #23	IQCH (ENSTSYG00000010472) #25	CUNH15orf61 (ENSTSYG00000014554) #26	MAP2K5 (ENSTSYG00000013834) #27
Simiiformes	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a.a #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l.b	ENSGT00390000005362 #37
Cebidae	ANCESTRAL SPECIES	29	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00940000170330	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000005362 #37	ENSGT00390000006043
Marmoset	MODERN SPECIES	1	HACD3 (ENSCJAG00000007084) #8	INTS14 (ENSCJAG00000007118) #9	SLC24A1 (ENSCJAG00000007180) #10	DENND4A (ENSCJAG00000007209) #11	RAB11A (ENSCJAG00000042037) #12	ENSCJAG00000083582	MEGF11 (ENSCJAG00000007353) #13	DIS3L (ENSCJAG00000007411) #14	ENSCJAG00000085355	MAP2K1 (ENSCJAG00000007460) #16	SNAPC5 (ENSCJAG00000070895) #17	ENSCJAG00000007491 #18	ZWILCH (ENSCJAG00000007524) #19	LCTL (ENSCJAG00000007558) #20	SMAD6 (ENSCJAG00000044644) #21	SMAD3 (ENSCJAG00000002088) #22	AAGAB (ENSCJAG00000002113) #23	IQCH (ENSCJAG00000002130) #25	ENSCJAG00000051609	ENSCJAG00000073121	C15orf61 (ENSCJAG00000054412) #26	MAP2K5 (ENSCJAG00000002156) #27	SKOR1 (ENSCJAG00000002196) #28	PIAS1 (ENSCJAG00000002224) #29	CALML4 (ENSCJAG00000002243) #30	ENSCJAG00000002250 #31	ENSCJAG00000074396	FEM1B (ENSCJAG00000002264) #33	ITGA11 (ENSCJAG00000002269) #34	CORO2B (ENSCJAG00000002319) #35	ENSCJAG00000086993
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.tb #36	ENSGT01020000230346.C.c.b.a.b.a.b	ENSGT00390000005362 #37
Capuchin	MODERN SPECIES	248	TFAP2D (ENSCCAG00000027869)	DEFB110 (ENSCCAG00000030485)	DEFB113 (ENSCCAG00000014271)	DEFB114 (ENSCCAG00000027397)	CRISP1 (ENSCCAG00000024689)	PGK2 (ENSCCAG00000004646)	CRISP3 (ENSCCAG00000027207)	CRISP2 (ENSCCAG00000035454)	RHAG (ENSCCAG00000027136)	MAP2K1 (ENSCCAG00000024279) #16	SNAPC5 (ENSCCAG00000020529) #17	ENSCCAG00000022533 #18	ZWILCH (ENSCCAG00000027333) #19	LCTL (ENSCCAG00000000633) #20	SMAD6 (ENSCCAG00000026913) #21	SMAD3 (ENSCCAG00000020767) #22	AAGAB (ENSCCAG00000024283) #23
Bolivian squirrel monkey	MODERN SPECIES	76									MAP2K1 (ENSSBOG00000023083) #16	SNAPC5 (ENSSBOG00000028815) #17	ENSSBOG00000015863 #18	ZWILCH (ENSSBOG00000033149) #19	ENSSBOG00000031231	LCTL (ENSSBOG00000023227) #20	ENSSBOG00000022363 #21	SMAD3 (ENSSBOG00000020894) #22	AAGAB (ENSSBOG00000035741) #23	IQCH (ENSSBOG00000024935) #25	C15orf61 (ENSSBOG00000022188) #26	MAP2K5 (ENSSBOG00000028179) #27	SKOR1 (ENSSBOG00000031705) #28	ENSSBOG00000032111	PIAS1 (ENSSBOG00000030212) #29	CALML4 (ENSSBOG00000031073) #30	CLN6 (ENSSBOG00000035779) #31	FEM1B (ENSSBOG00000030419) #33	ITGA11 (ENSSBOG00000030635) #34	CORO2B (ENSSBOG00000019665) #35	ANP32A (ENSSBOG00000030699) #36	ENSSBOG00000020197	ENSSBOG00000025043
Mas night monkey	MODERN SPECIES	1197								DMAC1 (ENSANAG00000029014)	ENSANAG00000033377	KDM4C (ENSANAG00000024798)	GLDC (ENSANAG00000034753)	UHRF2 (ENSANAG00000025453)	ENSANAG00000028396	ENSANAG00000024963	SMAD6 (ENSANAG00000020717) #21	SMAD3 (ENSANAG00000001462) #22	ENSANAG00000031752	AAGAB (ENSANAG00000038049) #23	ENSANAG00000037777	IQCH (ENSANAG00000037205) #25	C15orf61 (ENSANAG00000019347) #26	ENSANAG00000033304	MAP2K5 (ENSANAG00000026610) #27	SKOR1 (ENSANAG00000026767) #28	PIAS1 (ENSANAG00000023771) #29	CALML4 (ENSANAG00000036088) #30	ENSANAG00000035306	ENSANAG00000022199	CLN6 (ENSANAG00000031462) #31	FEM1B (ENSANAG00000036003) #33	ITGA11 (ENSANAG00000024399) #34
Catarrhini	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Hominidae	ANCESTRAL SPECIES	22	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Orangutan	MODERN SPECIES	6	INTS14 (ENSPPYG00000006570) #9	SLC24A1 (ENSPPYG00000006571) #10	DENND4A (ENSPPYG00000006572) #11	RAB11A (ENSPPYG00000006573) #12	MEGF11 (ENSPPYG00000039385) #13	DIS3L (ENSPPYG00000006575) #14	TIPIN (ENSPPYG00000031745) #15	MAP2K1 (ENSPPYG00000006576) #16	ENSPPYG00000032290	SNAPC5 (ENSPPYG00000040277) #17	RPL4 (ENSPPYG00000006578) #18	ZWILCH (ENSPPYG00000006579) #19	LCTL (ENSPPYG00000006580) #20	ENSPPYG00000006581 #21	ENSPPYG00000006582	SMAD3 (ENSPPYG00000006583) #22	AAGAB (ENSPPYG00000006584) #23	IQCH (ENSPPYG00000006585) #25	C15orf61 (ENSPPYG00000006586) #26	MAP2K5 (ENSPPYG00000006587) #27	SKOR1 (ENSPPYG00000006588) #28	PIAS1 (ENSPPYG00000006589) #29	ENSPPYG00000006590 #30	CLN6 (ENSPPYG00000006591) #31	FEM1B (ENSPPYG00000032577) #33	ITGA11 (ENSPPYG00000006593) #34	CORO2B (ENSPPYG00000006594) #35	ENSPPYG00000006595 #36	SPESP1 (ENSPPYG00000029816) #37	NOX5 (ENSPPYG00000006596)	GLCE (ENSPPYG00000006598)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Gorilla	MODERN SPECIES	463																SMAD3 (ENSGGOG00000043207) #22
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Human	MODERN SPECIES	6	DPP8 (ENSG00000074603) #7	HACD3 (ENSG00000074696) #8	INTS14 (ENSG00000138614) #9	SLC24A1 (ENSG00000074621) #10	DENND4A (ENSG00000174485) #11	RAB11A (ENSG00000103769) #12	MEGF11 (ENSG00000157890) #13	DIS3L (ENSG00000166938) #14	TIPIN (ENSG00000075131) #15	MAP2K1 (ENSG00000169032) #16	SNAPC5 (ENSG00000174446) #17	RPL4 (ENSG00000174444) #18	ZWILCH (ENSG00000174442) #19	LCTL (ENSG00000188501) #20	SMAD6 (ENSG00000137834) #21	SMAD3 (ENSG00000166949) #22	AAGAB (ENSG00000103591) #23	IQCH (ENSG00000103599) #25	C15orf61 (ENSG00000189227) #26	MAP2K5 (ENSG00000137764) #27	SKOR1 (ENSG00000188779) #28	PIAS1 (ENSG00000033800) #29	ENSG00000260007	CALML4 (ENSG00000129007) #30	CLN6 (ENSG00000128973) #31	FEM1B (ENSG00000169018) #33	ITGA11 (ENSG00000137809) #34	CORO2B (ENSG00000103647) #35	ANP32A (ENSG00000140350) #36	SPESP1 (ENSG00000258484) #37	NOX5 (ENSG00000290203)
Pan	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00510000046986.m.a	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Bonobo	MODERN SPECIES	6	RAB11A (ENSPPAG00000030195) #12	MEGF11 (ENSPPAG00000043580) #13	DIS3L (ENSPPAG00000019888) #14	TIPIN (ENSPPAG00000033427) #15	ENSPPAG00000041842	ENSPPAG00000038145	MAP2K1 (ENSPPAG00000028577) #16	ENSPPAG00000033063	SNAPC5 (ENSPPAG00000041196) #17	ENSPPAG00000035309 #18	ZWILCH (ENSPPAG00000033861) #19	LCTL (ENSPPAG00000040836) #20	SMAD6 (ENSPPAG00000027722) #21	ENSPPAG00000036915	ENSPPAG00000020485	SMAD3 (ENSPPAG00000033769) #22	AAGAB (ENSPPAG00000041055) #23	IQCH (ENSPPAG00000042974) #25	C15orf61 (ENSPPAG00000026999) #26	MAP2K5 (ENSPPAG00000036945) #27	ENSPPAG00000033373	ENSPPAG00000036055 #28	PIAS1 (ENSPPAG00000041443) #29	ENSPPAG00000033363 #30	CLN6 (ENSPPAG00000030498) #31	FEM1B (ENSPPAG00000030523) #33	ITGA11 (ENSPPAG00000030683) #34	CORO2B (ENSPPAG00000030458) #35	ENSPPAG00000034193 #36	ENSPPAG00000020890	SPESP1 (ENSPPAG00000040777) #37
Chimpanzee	MODERN SPECIES	6	DENND4A (ENSPTRG00000007186) #11	RAB11A (ENSPTRG00000044358) #12	MEGF11 (ENSPTRG00000007189) #13	DIS3L (ENSPTRG00000007191) #14	TIPIN (ENSPTRG00000007192) #15	ENSPTRG00000051889	MAP2K1 (ENSPTRG00000007193) #16	ENSPTRG00000049603	SNAPC5 (ENSPTRG00000007194) #17	RPL4 (ENSPTRG00000007195) #18	ZWILCH (ENSPTRG00000007196) #19	LCTL (ENSPTRG00000007197) #20	SMAD6 (ENSPTRG00000007198) #21	ENSPTRG00000044014	ENSPTRG00000047146	SMAD3 (ENSPTRG00000007199) #22	AAGAB (ENSPTRG00000007202) #23	IQCH (ENSPTRG00000007205) #25	C15H15orf61 (ENSPTRG00000030250) #26	MAP2K5 (ENSPTRG00000007207) #27	ENSPTRG00000048990	SKOR1 (ENSPTRG00000007209) #28	PIAS1 (ENSPTRG00000007210) #29	CALML4 (ENSPTRG00000007211) #30	CLN6 (ENSPTRG00000007212) #31	FEM1B (ENSPTRG00000007214) #33	ITGA11 (ENSPTRG00000007215) #34	CORO2B (ENSPTRG00000007218) #35	ANP32A (ENSPTRG00000007219) #36	ENSPTRG00000050341	SPESP1 (ENSPTRG00000007221) #37
Gibbon	MODERN SPECIES	21	HACD3 (ENSNLEG00000012725) #8	INTS14 (ENSNLEG00000012745) #9	ENSNLEG00000012767 #10	DENND4A (ENSNLEG00000012772) #11	RAB11A (ENSNLEG00000012853) #12	MEGF11 (ENSNLEG00000012863) #13	DIS3L (ENSNLEG00000012891) #14	TIPIN (ENSNLEG00000012909) #15	MAP2K1 (ENSNLEG00000012913) #16	SNAPC5 (ENSNLEG00000033124) #17	ENSNLEG00000012938 #18	ZWILCH (ENSNLEG00000012950) #19	LCTL (ENSNLEG00000012956) #20	SMAD6 (ENSNLEG00000032864) #21	ENSNLEG00000028836	SMAD3 (ENSNLEG00000012983) #22	AAGAB (ENSNLEG00000013006) #23	IQCH (ENSNLEG00000013025) #25	C15orf61 (ENSNLEG00000013065) #26	MAP2K5 (ENSNLEG00000013066) #27	ENSNLEG00000032785	SKOR1 (ENSNLEG00000013091) #28	ENSNLEG00000031759	PIAS1 (ENSNLEG00000013103) #29	ENSNLEG00000013164 #30	CLN6 (ENSNLEG00000013178) #31	FEM1B (ENSNLEG00000013213) #33	ITGA11 (ENSNLEG00000013220) #34	CORO2B (ENSNLEG00000013333) #35	ANP32A (ENSNLEG00000013347) #36	SPESP1 (ENSNLEG00000013404) #37
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37	ENSGT00940000162591
Vervet Monkey	MODERN SPECIES	18	INTS14 (ENSCSAG00000012981) #9	SLC24A1 (ENSCSAG00000013003) #10	DENND4A (ENSCSAG00000013032) #11	RAB11A (ENSCSAG00000013038) #12	MEGF11 (ENSCSAG00000013112) #13	DIS3L (ENSCSAG00000013140) #14	TIPIN (ENSCSAG00000013176) #15	MAP2K1 (ENSCSAG00000013191) #16	SNAPC5 (ENSCSAG00000013199) #17	ENSCSAG00000013205 #18	ZWILCH (ENSCSAG00000013218) #19	LCTL (ENSCSAG00000013237) #20	SMAD6 (ENSCSAG00000013248) #21	ENSCSAG00000013271	ENSCSAG00000019736	SMAD3 (ENSCSAG00000013275) #22	AAGAB (ENSCSAG00000013281) #23	IQCH (ENSCSAG00000013352) #25	C15orf61 (ENSCSAG00000013380) #26	MAP2K5 (ENSCSAG00000013397) #27	SKOR1 (ENSCSAG00000013424) #28	PIAS1 (ENSCSAG00000013455) #29	CALML4 (ENSCSAG00000013468) #30	CLN6 (ENSCSAG00000013477) #31	ENSCSAG00000013485	ITGA11 (ENSCSAG00000013505) #34	CORO2B (ENSCSAG00000013518) #35	ANP32A (ENSCSAG00000013528) #36	SPESP1 (ENSCSAG00000013535) #37	NOX5 (ENSCSAG00000013567)	GLCE (ENSCSAG00000013585)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00910000147053
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00910000147053
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00910000147053
Drill	MODERN SPECIES	253	DENND4A (ENSMLEG00000041101) #11	RAB11A (ENSMLEG00000032505) #12	MEGF11 (ENSMLEG00000042443) #13	ENSMLEG00000039621	DIS3L (ENSMLEG00000034558) #14	TIPIN (ENSMLEG00000031419) #15	MAP2K1 (ENSMLEG00000034124) #16	SNAPC5 (ENSMLEG00000044262) #17	ENSMLEG00000043250 #18	ZWILCH (ENSMLEG00000031789) #19	LCTL (ENSMLEG00000011538) #20	ENSMLEG00000036582	ENSMLEG00000039010	ENSMLEG00000033311	ENSMLEG00000039372	SMAD3 (ENSMLEG00000032633) #22	AAGAB (ENSMLEG00000042581) #23	IQCH (ENSMLEG00000008461) #25	C15orf61 (ENSMLEG00000044432) #26	MAP2K5 (ENSMLEG00000032952) #27	SKOR1 (ENSMLEG00000033424) #28	PIAS1 (ENSMLEG00000042488) #29	CALML4 (ENSMLEG00000034518) #30	CLN6 (ENSMLEG00000031755) #31	FEM1B (ENSMLEG00000031589) #33	ITGA11 (ENSMLEG00000034075) #34	CORO2B (ENSMLEG00000034024) #35	ANP32A (ENSMLEG00000028255) #36	SPESP1 (ENSMLEG00000035603) #37	NOX5 (ENSMLEG00000025119)	ENSMLEG00000026060
Sooty mangabey	MODERN SPECIES	336	SLC24A1 (ENSCATG00000034684) #10	DENND4A (ENSCATG00000030001) #11	RAB11A (ENSCATG00000034739) #12	MEGF11 (ENSCATG00000032543) #13	DIS3L (ENSCATG00000044661) #14	TIPIN (ENSCATG00000040328) #15	MAP2K1 (ENSCATG00000038127) #16	SNAPC5 (ENSCATG00000029571) #17	ENSCATG00000031544 #18	ZWILCH (ENSCATG00000036836) #19	LCTL (ENSCATG00000033622) #20	ENSCATG00000019079	SMAD6 (ENSCATG00000002013) #21	ENSCATG00000035445	ENSCATG00000000879	SMAD3 (ENSCATG00000009733) #22	AAGAB (ENSCATG00000043588) #23	IQCH (ENSCATG00000042766) #25	C15orf61 (ENSCATG00000012736) #26	MAP2K5 (ENSCATG00000040709) #27	SKOR1 (ENSCATG00000011653) #28	PIAS1 (ENSCATG00000010291) #29	CALML4 (ENSCATG00000040034) #30	CLN6 (ENSCATG00000003907) #31	FEM1B (ENSCATG00000044684) #33	ITGA11 (ENSCATG00000030599) #34	CORO2B (ENSCATG00000040950) #35	ENSCATG00000024063	ANP32A (ENSCATG00000031468) #36	SPESP1 (ENSCATG00000044425) #37	NOX5 (ENSCATG00000036564)
Olive baboon	MODERN SPECIES	17	SLC24A1 (ENSPANG00000016700) #10	DENND4A (ENSPANG00000016685) #11	RAB11A (ENSPANG00000016687) #12	MEGF11 (ENSPANG00000016670) #13	ENSPANG00000024144	ENSPANG00000046531	DIS3L (ENSPANG00000016671) #14	TIPIN (ENSPANG00000016672) #15	MAP2K1 (ENSPANG00000016664) #16	SNAPC5 (ENSPANG00000016665) #17	ENSPANG00000016666 #18	ZWILCH (ENSPANG00000016646) #19	LCTL (ENSPANG00000016647) #20	SMAD6 (ENSPANG00000016648) #21	ENSPANG00000016626	SMAD3 (ENSPANG00000016627) #22	AAGAB (ENSPANG00000016628) #23	IQCH (ENSPANG00000016625) #25	C15orf61 (ENSPANG00000016591) #26	MAP2K5 (ENSPANG00000016592) #27	SKOR1 (ENSPANG00000016593) #28	ENSPANG00000043681	PIAS1 (ENSPANG00000016583) #29	CALML4 (ENSPANG00000016584) #30	CLN6 (ENSPANG00000016585) #31	ENSPANG00000037059	FEM1B (ENSPANG00000016581) #33	ITGA11 (ENSPANG00000016582) #34	CORO2B (ENSPANG00000016540) #35	ENSPANG00000048171	ANP32A (ENSPANG00000016536) #36
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000011417.l	ENSGT00390000005362 #37	ENSGT00940000162591
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.a.a
Rhesus	MODERN SPECIES	17	INTS14 (ENSMMUG00000008095) #9	SLC24A1 (ENSMMUG00000022059) #10	DENND4A (ENSMMUG00000022056) #11	RAB11A (ENSMMUG00000008006) #12	MEGF11 (ENSMMUG00000008007) #13	DIS3L (ENSMMUG00000003693) #14	TIPIN (ENSMMUG00000003695) #15	MAP2K1 (ENSMMUG00000016840) #16	SNAPC5 (ENSMMUG00000060148) #17	RPL4 (ENSMMUG00000016844) #18	ZWILCH (ENSMMUG00000029588) #19	LCTL (ENSMMUG00000017447) #20	ENSMMUG00000063378	SMAD6 (ENSMMUG00000019018) #21	ENSMMUG00000057696	SMAD3 (ENSMMUG00000015455) #22	ENSMMUG00000051534	AAGAB (ENSMMUG00000041415) #23	IQCH (ENSMMUG00000015458) #25	C7H15orf61 (ENSMMUG00000060549) #26	MAP2K5 (ENSMMUG00000014482) #27	SKOR1 (ENSMMUG00000014485) #28	PIAS1 (ENSMMUG00000011699) #29	CLN6 (ENSMMUG00000011703) #31	FEM1B (ENSMMUG00000008311) #33	ITGA11 (ENSMMUG00000004026) #34	CORO2B (ENSMMUG00000006356) #35	ANP32A (ENSMMUG00000022717) #36	ENSMMUG00000064021	SPESP1 (ENSMMUG00000063939) #37	NOX5 (ENSMMUG00000006230)
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000047947	ENSMFAG00000060677	ENSMFAG00000055472	RAB11A (ENSMFAG00000000699) #12	MEGF11 (ENSMFAG00000038247) #13	DIS3L (ENSMFAG00000035628) #14	TIPIN (ENSMFAG00000031924) #15	MAP2K1 (ENSMFAG00000036522) #16	ENSMFAG00000063036	SNAPC5 (ENSMFAG00000046383) #17	RPL4 (ENSMFAG00000036412) #18	ZWILCH (ENSMFAG00000036529) #19	LCTL (ENSMFAG00000000458) #20	ENSMFAG00000037066	ENSMFAG00000062655	SMAD3 (ENSMFAG00000001781) #22	AAGAB (ENSMFAG00000040550) #23	IQCH (ENSMFAG00000001124) #25	C15orf61 (ENSMFAG00000053739) #26	MAP2K5 (ENSMFAG00000030100) #27	SKOR1 (ENSMFAG00000001347) #28	PIAS1 (ENSMFAG00000038832) #29	CLN6 (ENSMFAG00000042975) #31	CALML4 (ENSMFAG00000036145) #30	FEM1B (ENSMFAG00000064469) #33	ITGA11 (ENSMFAG00000001090) #34	CORO2B (ENSMFAG00000030894) #35	ANP32A (ENSMFAG00000043083) #36	ENSMFAG00000050608	SPESP1 (ENSMFAG00000043000) #37	NOX5 (ENSMFAG00000000728)
Pig-tailed macaque	MODERN SPECIES	77	SLC24A1 (ENSMNEG00000041188) #10	DENND4A (ENSMNEG00000031159) #11	RAB11A (ENSMNEG00000043040) #12	MEGF11 (ENSMNEG00000028540) #13	DIS3L (ENSMNEG00000035066) #14	TIPIN (ENSMNEG00000031947) #15	MAP2K1 (ENSMNEG00000027299) #16	SNAPC5 (ENSMNEG00000032504) #17	ENSMNEG00000027886 #18	ZWILCH (ENSMNEG00000034955) #19	LCTL (ENSMNEG00000002923) #20	ENSMNEG00000031888	SMAD6 (ENSMNEG00000034598) #21	ENSMNEG00000032567	ENSMNEG00000030486	SMAD3 (ENSMNEG00000033094) #22	AAGAB (ENSMNEG00000040056) #23	IQCH (ENSMNEG00000034386) #25	C15orf61 (ENSMNEG00000034192) #26	MAP2K5 (ENSMNEG00000043681) #27	SKOR1 (ENSMNEG00000032875) #28	PIAS1 (ENSMNEG00000030278) #29	CALML4 (ENSMNEG00000033193) #30	CLN6 (ENSMNEG00000034743) #31	FEM1B (ENSMNEG00000033491) #33	ITGA11 (ENSMNEG00000031314) #34	CORO2B (ENSMNEG00000028626) #35	ANP32A (ENSMNEG00000043179) #36	ENSMNEG00000038547	SPESP1 (ENSMNEG00000024286) #37	NOX5 (ENSMNEG00000032218)
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a #18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b.ub #36	ENSGT00390000005362 #37	ENSGT00940000162591
Golden snub-nosed monkey	MODERN SPECIES	1106		RAB11A (ENSRROG00000035305) #12	MEGF11 (ENSRROG00000025747) #13	DIS3L (ENSRROG00000038323) #14	TIPIN (ENSRROG00000004107) #15	MAP2K1 (ENSRROG00000034405) #16	SNAPC5 (ENSRROG00000042536) #17	ENSRROG00000036201 #18	ZWILCH (ENSRROG00000042656) #19	LCTL (ENSRROG00000040652) #20	ENSRROG00000034499	ENSRROG00000009183	ENSRROG00000043245 #21	ENSRROG00000012076	ENSRROG00000003570	SMAD3 (ENSRROG00000024517) #22	AAGAB (ENSRROG00000042217) #23	IQCH (ENSRROG00000023549) #25	C15orf61 (ENSRROG00000026466) #26	MAP2K5 (ENSRROG00000043911) #27	ENSRROG00000000680	SKOR1 (ENSRROG00000040038) #28	PIAS1 (ENSRROG00000029180) #29	CALML4 (ENSRROG00000045323) #30	CLN6 (ENSRROG00000033033) #31	FEM1B (ENSRROG00000030899) #33	ITGA11 (ENSRROG00000032503) #34	CORO2B (ENSRROG00000043899) #35	ANP32A (ENSRROG00000029508) #36	ENSRROG00000028422	SPESP1 (ENSRROG00000031515) #37
Black snub-nosed monkey	MODERN SPECIES	1519	INTS14 (ENSRBIG00000037004) #9	SLC24A1 (ENSRBIG00000029938) #10	DENND4A (ENSRBIG00000043812) #11	RAB11A (ENSRBIG00000035649) #12	MEGF11 (ENSRBIG00000032238) #13	DIS3L (ENSRBIG00000029360) #14	TIPIN (ENSRBIG00000035207) #15	MAP2K1 (ENSRBIG00000031516) #16	SNAPC5 (ENSRBIG00000033556) #17	ENSRBIG00000043139 #18	ZWILCH (ENSRBIG00000043121) #19	ENSRBIG00000038789	LCTL (ENSRBIG00000034724) #20	ENSRBIG00000044058	SMAD6 (ENSRBIG00000039005) #21	SMAD3 (ENSRBIG00000026650) #22	AAGAB (ENSRBIG00000027896) #23	IQCH (ENSRBIG00000037509) #25	C15orf61 (ENSRBIG00000041044) #26	MAP2K5 (ENSRBIG00000042741) #27	SKOR1 (ENSRBIG00000027225) #28	PIAS1 (ENSRBIG00000035465) #29	CALML4 (ENSRBIG00000022837) #30	CLN6 (ENSRBIG00000028123) #31	FEM1B (ENSRBIG00000029847) #33	ITGA11 (ENSRBIG00000032002) #34	CORO2B (ENSRBIG00000035447) #35	ANP32A (ENSRBIG00000032599) #36	SPESP1 (ENSRBIG00000038257) #37	NOX5 (ENSRBIG00000038740)	ENSRBIG00000044757
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.db.a #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Equus	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.eb #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Horse	MODERN SPECIES		IGDCC4 (ENSECAG00000024668)	DPP8 (ENSECAG00000010846) #7	HACD3 (ENSECAG00000023082) #8	INTS14 (ENSECAG00000018884) #9	SLC24A1 (ENSECAG00000013327) #10	DENND4A (ENSECAG00000024306) #11	RAB11A (ENSECAG00000023865) #12	MEGF11 (ENSECAG00000000706) #13	DIS3L (ENSECAG00000007302) #14	TIPIN (ENSECAG00000004590) #15	MAP2K1 (ENSECAG00000010640) #16	RPL4 (ENSECAG00000023179) #18	ZWILCH (ENSECAG00000018367) #19	LCTL (ENSECAG00000014254) #20	SMAD6 (ENSECAG00000013706) #21	SMAD3 (ENSECAG00000020259) #22	ENSECAG00000047849 #25	AAGAB (ENSECAG00000013142) #23	IQCH (ENSECAG00000007674) #25	ENSECAG00000029823	MAP2K5 (ENSECAG00000022411) #27	SKOR1 (ENSECAG00000036584) #28	ENSECAG00000005747	PIAS1 (ENSECAG00000007993) #29	CALML4 (ENSECAG00000021844) #30	CLN6 (ENSECAG00000016991) #31	FEM1B (ENSECAG00000015587)	ITGA11 (ENSECAG00000023104) #34	CORO2B (ENSECAG00000014020) #35	ENSECAG00000002541 #36	SPESP1 (ENSECAG00000002377) #37
Donkey	MODERN SPECIES	11	DPP8 (ENSEASG00005006459) #7	HACD3 (ENSEASG00005006456) #8	INTS14 (ENSEASG00005006454) #9	SLC24A1 (ENSEASG00005006448) #10	DENND4A (ENSEASG00005006437) #11	RAB11A (ENSEASG00005006431) #12	MEGF11 (ENSEASG00005006429) #13	DIS3L (ENSEASG00005006407) #14	TIPIN (ENSEASG00005006396) #15	MAP2K1 (ENSEASG00005006387) #16	SNAPC5 (ENSEASG00005006384) #17	RPL4 (ENSEASG00005006373) #18	ZWILCH (ENSEASG00005006339) #19	LCTL (ENSEASG00005006319) #20	ENSEASG00005025450 #21	SMAD3 (ENSEASG00005006315) #22	AAGAB (ENSEASG00005006311) #23	IQCH (ENSEASG00005006301) #25	ENSEASG00005006297 #26	MAP2K5 (ENSEASG00005006290) #27	SKOR1 (ENSEASG00005006277) #28	ENSEASG00005006267	PIAS1 (ENSEASG00005006262) #29	CALML4 (ENSEASG00005033729) #30	CLN6 (ENSEASG00005034200) #31	FEM1B (ENSEASG00005006255) #33	ITGA11 (ENSEASG00005006251) #34	CORO2B (ENSEASG00005006245) #35	ENSEASG00005006243 #36	SPESP1 (ENSEASG00005028304) #37	NOX5 (ENSEASG00005006228)
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.db.a #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465.h #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Megabat	MODERN SPECIES	3284																SMAD3 (ENSPVAG00000002626) #22	AAGAB (ENSPVAG00000002627) #23	IQCH (ENSPVAG00000002628) #25
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.db.a #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465.h #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Greater horseshoe bat	MODERN SPECIES	24	HACD3 (ENSRFEG00010004527) #8	INTS14 (ENSRFEG00010004454) #9	SLC24A1 (ENSRFEG00010004368) #10	DENND4A (ENSRFEG00010004242) #11	ENSRFEG00010004168 #12	MEGF11 (ENSRFEG00010004126) #13	DIS3L (ENSRFEG00010004058) #14	TIPIN (ENSRFEG00010004026) #15	MAP2K1 (ENSRFEG00010004010) #16	SNAPC5 (ENSRFEG00010003999) #17	ENSRFEG00010003980 #18	ZWILCH (ENSRFEG00010003952) #19	LCTL (ENSRFEG00010003917) #20	ENSRFEG00010003900	SMAD6 (ENSRFEG00010003887) #21	SMAD3 (ENSRFEG00010003872) #22	AAGAB (ENSRFEG00010003850) #23	IQCH (ENSRFEG00010003782) #25	MAP2K5 (ENSRFEG00010003624) #27	SKOR1 (ENSRFEG00010003500) #28	ENSRFEG00010003474	ENSRFEG00010003431 #29	ENSRFEG00010003398 #30	CLN6 (ENSRFEG00010003356) #31	FEM1B (ENSRFEG00010003282) #33	ITGA11 (ENSRFEG00010003262) #34	CORO2B (ENSRFEG00010003225) #35	ENSRFEG00010003201 #36	SPESP1 (ENSRFEG00010003175) #37	ENSRFEG00010003165	GLCE (ENSRFEG00010003151)
Microbat	MODERN SPECIES	1275																SMAD3 (ENSMLUG00000002185) #22	AAGAB (ENSMLUG00000002191) #23	IQCH (ENSMLUG00000002192) #25	C15orf61 (ENSMLUG00000029534) #26	MAP2K5 (ENSMLUG00000002205) #27	PIAS1 (ENSMLUG00000010321) #29	CALML4 (ENSMLUG00000010350) #30	CLN6 (ENSMLUG00000008964) #31	FEM1B (ENSMLUG00000008987) #33	ITGA11 (ENSMLUG00000008993) #34
Carnivora	ANCESTRAL SPECIES		ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Canidae	ANCESTRAL SPECIES	15	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00950000185603	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218.m #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00940000153533.a.m.b.b
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.lc.a #18	ENSGT00390000013696 #19	ENSGT00950000185603	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218.m #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00940000153533.a.m.b.b
Dingo	MODERN SPECIES	205	DPP8 (ENSCAFG00020008685) #7	HACD3 (ENSCAFG00020008678) #8	INTS14 (ENSCAFG00020008669) #9	SLC24A1 (ENSCAFG00020008562) #10	DENND4A (ENSCAFG00020008501) #11	RAB11A (ENSCAFG00020008478) #12	MEGF11 (ENSCAFG00020008443) #13	DIS3L (ENSCAFG00020008413) #14	TIPIN (ENSCAFG00020008398) #15	MAP2K1 (ENSCAFG00020008392) #16	SNAPC5 (ENSCAFG00020008387) #17	ENSCAFG00020008355 #18	ZWILCH (ENSCAFG00020008215) #19	LCTL (ENSCAFG00020008195) #20	SMAD6 (ENSCAFG00020008193) #21	SMAD3 (ENSCAFG00020008177) #22	ENSCAFG00020008170 #23	IQCH (ENSCAFG00020008118) #25	C15orf61 (ENSCAFG00020008094) #26	MAP2K5 (ENSCAFG00020008071) #27	SKOR1 (ENSCAFG00020008049) #28	PIAS1 (ENSCAFG00020008026) #29	CALML4 (ENSCAFG00020008020) #30	CLN6 (ENSCAFG00020008011) #31	FEM1B (ENSCAFG00020008006) #33	ITGA11 (ENSCAFG00020007730) #34	CORO2B (ENSCAFG00020007691) #35	ENSCAFG00020007674	ENSCAFG00020007670 #36	SPESP1 (ENSCAFG00020007667) #37	NOX5 (ENSCAFG00020007565)
Dog	MODERN SPECIES	23	INTS14 (ENSCAFG00845026081) #9	SLC24A1 (ENSCAFG00845026323) #10	DENND4A (ENSCAFG00845026536) #11	RAB11A (ENSCAFG00845027320) #12	ENSCAFG00845014976 #13	DIS3L (ENSCAFG00845015076) #14	TIPIN (ENSCAFG00845015229) #15	ENSCAFG00845015268	MAP2K1 (ENSCAFG00845015371) #16	SNAPC5 (ENSCAFG00845015512) #17	RPL4 (ENSCAFG00845015609) #18	ZWILCH (ENSCAFG00845015845) #19	ENSCAFG00845016122	LCTL (ENSCAFG00845016168) #20	SMAD6 (ENSCAFG00845016415) #21	SMAD3 (ENSCAFG00845016639) #22	AAGAB (ENSCAFG00845016886) #23	IQCH (ENSCAFG00845017088) #25	C15orf61 (ENSCAFG00845017380) #26	MAP2K5 (ENSCAFG00845017514) #27	SKOR1 (ENSCAFG00845017976) #28	PIAS1 (ENSCAFG00845018319) #29	CALML4 (ENSCAFG00845018790) #30	CLN6 (ENSCAFG00845018935) #31	FEM1B (ENSCAFG00845019340) #33	ITGA11 (ENSCAFG00845019410) #34	CORO2B (ENSCAFG00845019590) #35	ANP32A (ENSCAFG00845019800) #36	SPESP1 (ENSCAFG00845019873) #37	NOX5 (ENSCAFG00845020023)	ENSCAFG00845020567
Red fox	MODERN SPECIES		SLC24A1 (ENSVVUG00000014313) #10	DENND4A (ENSVVUG00000014392) #11	RAB11A (ENSVVUG00000014435) #12	MEGF11 (ENSVVUG00000014448) #13	DIS3L (ENSVVUG00000014492) #14	TIPIN (ENSVVUG00000014501) #15	MAP2K1 (ENSVVUG00000014514) #16	SNAPC5 (ENSVVUG00000014527) #17	ENSVVUG00000014531 #18	ZWILCH (ENSVVUG00000014559) #19	ENSVVUG00000014578	LCTL (ENSVVUG00000014585) #20	ENSVVUG00000014612	ENSVVUG00000014615	SMAD6 (ENSVVUG00000014625) #21	SMAD3 (ENSVVUG00000014647) #22	AAGAB (ENSVVUG00000014658) #23	IQCH (ENSVVUG00000014665) #25	C15orf61 (ENSVVUG00000014693) #26	MAP2K5 (ENSVVUG00000014703) #27	ENSVVUG00000014708 #28	PIAS1 (ENSVVUG00000014713) #29	ENSVVUG00000014716 #30	CLN6 (ENSVVUG00000014717) #31	FEM1B (ENSVVUG00000014718) #33	ITGA11 (ENSVVUG00000014719) #34	CORO2B (ENSVVUG00000014724) #35	ANP32A (ENSVVUG00000014726) #36	SPESP1 (ENSVVUG00000014730) #37	NOX5 (ENSVVUG00000014734)	ENSVVUG00000014756
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Ursidae	ANCESTRAL SPECIES	21	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B.p #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Giant Panda	MODERN SPECIES	15	DPP8 (ENSAMEG00000002924) #7	HACD3 (ENSAMEG00000002983) #8	INTS14 (ENSAMEG00000003002) #9	SLC24A1 (ENSAMEG00000003029) #10	DENND4A (ENSAMEG00000003046) #11	RAB11A (ENSAMEG00000003119) #12	MEGF11 (ENSAMEG00000003131) #13	DIS3L (ENSAMEG00000003166) #14	TIPIN (ENSAMEG00000027725) #15	MAP2K1 (ENSAMEG00000003218) #16	SNAPC5 (ENSAMEG00000003249) #17	ENSAMEG00000029170 #18	ZWILCH (ENSAMEG00000003251) #19	LCTL (ENSAMEG00000003300) #20	SMAD6 (ENSAMEG00000029979) #21	SMAD3 (ENSAMEG00000003318) #22	AAGAB (ENSAMEG00000028433) #23	IQCH (ENSAMEG00000005044) #25	C15orf61 (ENSAMEG00000029099) #26	MAP2K5 (ENSAMEG00000005013) #27	SKOR1 (ENSAMEG00000004996) #28	PIAS1 (ENSAMEG00000014025) #29	CALML4 (ENSAMEG00000014054) #30	CLN6 (ENSAMEG00000014058) #31	FEM1B (ENSAMEG00000014073) #33	ITGA11 (ENSAMEG00000014076) #34	CORO2B (ENSAMEG00000014093) #35	ENSAMEG00000014117 #36	SPESP1 (ENSAMEG00000014134) #37	NOX5 (ENSAMEG00000014136)	ENSAMEG00000020008
Ursus	ANCESTRAL SPECIES	37	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B.p #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
American black bear	MODERN SPECIES	83															SMAD6 (ENSUAMG00000020556) #21	SMAD3 (ENSUAMG00000020554) #22	AAGAB (ENSUAMG00000020553) #23	IQCH (ENSUAMG00000020552) #25	C15orf61 (ENSUAMG00000020551) #26
Polar bear	MODERN SPECIES	320	IGDCC3 (ENSUMAG00000012461)	ENSUMAG00000012451	DPP8 (ENSUMAG00000012441) #7	HACD3 (ENSUMAG00000012379) #8	INTS14 (ENSUMAG00000012368) #9	SLC24A1 (ENSUMAG00000012325) #10	DENND4A (ENSUMAG00000012290) #11	RAB11A (ENSUMAG00000012273) #12	MEGF11 (ENSUMAG00000012242) #13	DIS3L (ENSUMAG00000012227) #14	TIPIN (ENSUMAG00000012215) #15	MAP2K1 (ENSUMAG00000012208) #16	RPL4 (ENSUMAG00000012178) #18	ZWILCH (ENSUMAG00000012145) #19	LCTL (ENSUMAG00000012072) #20	ENSUMAG00000012057 #22	AAGAB (ENSUMAG00000012048) #23	IQCH (ENSUMAG00000012020) #25	C15orf61 (ENSUMAG00000012016) #26	MAP2K5 (ENSUMAG00000011992) #27	ENSUMAG00000011983	PIAS1 (ENSUMAG00000011980) #29	CALML4 (ENSUMAG00000011979) #30	ENSUMAG00000011962 #31	FEM1B (ENSUMAG00000011958) #33	ITGA11 (ENSUMAG00000011792) #34	CORO2B (ENSUMAG00000011755) #35	ENSUMAG00000011740 #36	ENSUMAG00000011724	SPESP1 (ENSUMAG00000011718) #37	NOX5 (ENSUMAG00000011648)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
American mink	MODERN SPECIES	46	DPP8 (ENSNVIG00000017340) #7	HACD3 (ENSNVIG00000017259) #8	CO044 (ENSNVIG00000017199) #9	SLC24A1 (ENSNVIG00000017089) #10	DENND4A (ENSNVIG00000016862) #11	RAB11A (ENSNVIG00000016821) #12	MEGF11 (ENSNVIG00000016583) #13	DIS3L (ENSNVIG00000016535) #14	TIPIN (ENSNVIG00000016513) #15	MAP2K1 (ENSNVIG00000016498) #16	SNAPC5 (ENSNVIG00000016483) #17	RPL4 (ENSNVIG00000016412) #18	ZWILC (ENSNVIG00000016326) #19	LCTL (ENSNVIG00000016282) #20	SMAD6 (ENSNVIG00000016271) #21	SMAD3 (ENSNVIG00000016249) #22	AAGAB (ENSNVIG00000016212) #23	IQCH (ENSNVIG00000016136) #25	MP2K5 (ENSNVIG00000015958) #27	SKOR1 (ENSNVIG00000015923) #28	PIAS1 (ENSNVIG00000015868) #29	CALML4 (ENSNVIG00000015844) #30	CLN6 (ENSNVIG00000015741) #31	FEM1B (ENSNVIG00000015730) #33	ITGA11 (ENSNVIG00000015665) #34	ENSNVIG00000015659	CORO2B (ENSNVIG00000015623) #35	ENSNVIG00000015596 #36	ENSNVIG00000015562	SPESP1 (ENSNVIG00000015552) #37	NOX5 (ENSNVIG00000015522)
Ferret	MODERN SPECIES	228	HACD3 (ENSMPUG00000000475) #8	INTS14 (ENSMPUG00000000472) #9	SLC24A1 (ENSMPUG00000000468) #10	DENND4A (ENSMPUG00000000388) #11	RAB11A (ENSMPUG00000000387) #12	MEGF11 (ENSMPUG00000000383) #13	DIS3L (ENSMPUG00000000378) #14	TIPIN (ENSMPUG00000000365) #15	MAP2K1 (ENSMPUG00000000363) #16	SNAPC5 (ENSMPUG00000000356) #17	ENSMPUG00000000337 #18	ZWILCH (ENSMPUG00000000333) #19	LCTL (ENSMPUG00000000312) #20	ENSMPUG00000000309	SMAD6 (ENSMPUG00000000307) #21	SMAD3 (ENSMPUG00000000304) #22	AAGAB (ENSMPUG00000000292) #23	IQCH (ENSMPUG00000000289) #25	C15orf61 (ENSMPUG00000000287) #26	MAP2K5 (ENSMPUG00000000285) #27	SKOR1 (ENSMPUG00000000283) #28	PIAS1 (ENSMPUG00000000281) #29	CALML4 (ENSMPUG00000000270) #30	CLN6 (ENSMPUG00000000267) #31	FEM1B (ENSMPUG00000000266) #33	ITGA11 (ENSMPUG00000000221) #34	CORO2B (ENSMPUG00000000220) #35	ENSMPUG00000000218 #36	ENSMPUG00000000216	SPESP1 (ENSMPUG00000000214) #37	NOX5 (ENSMPUG00000000210)
Felidae	ANCESTRAL SPECIES	1	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Panthera	ANCESTRAL SPECIES	3	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00910000146962	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
lion	MODERN SPECIES	6	HACD3 (ENSPLOG00000009943) #8	INTS14 (ENSPLOG00000009755) #9	SLC24A1 (ENSPLOG00000009464) #10	DENND4A (ENSPLOG00000008717) #11	RAB11A (ENSPLOG00000008488) #12	MEGF11 (ENSPLOG00000008100) #13	DIS3L (ENSPLOG00000007929) #14	TIPIN (ENSPLOG00000007894) #15	MAP2K1 (ENSPLOG00000007836) #16	SNAPC5 (ENSPLOG00000007792) #17	RPL4 (ENSPLOG00000007707) #18	ZWILCH (ENSPLOG00000007600) #19	LCTL (ENSPLOG00000007528) #20	SMAD6 (ENSPLOG00000007495) #21	ENSPLOG00000007093	SMAD3 (ENSPLOG00000007068) #22	AAGAB (ENSPLOG00000007046) #23	IQCH (ENSPLOG00000006897) #25	C15orf61 (ENSPLOG00000006817) #26	MAP2K5 (ENSPLOG00000006228) #27	SKOR1 (ENSPLOG00000005020) #28	PIAS1 (ENSPLOG00000004975) #29	CALML4 (ENSPLOG00000004955) #30	CLN6 (ENSPLOG00000004871) #31	FEM1B (ENSPLOG00000004841) #33	ITGA11 (ENSPLOG00000004793) #34	CORO2B (ENSPLOG00000004744) #35	ENSPLOG00000004724 #36	SPESP1 (ENSPLOG00000004706) #37	NOX5 (ENSPLOG00000004683)	GLCE (ENSPLOG00000004669)
leopard	MODERN SPECIES	7	ENSPPRG00000001945	HACD3 (ENSPPRG00000003107) #8	INTS14 (ENSPPRG00000003935) #9	SLC24A1 (ENSPPRG00000006682) #10	DENND4A (ENSPPRG00000009637) #11	RAB11A (ENSPPRG00000010471) #12	MEGF11 (ENSPPRG00000014069) #13	DIS3L (ENSPPRG00000019912) #14	TIPIN (ENSPPRG00000022554) #15	MAP2K1 (ENSPPRG00000022608) #16	SNAPC5 (ENSPPRG00000000465) #17	ENSPPRG00000000610 #18	ZWILCH (ENSPPRG00000001390) #19	LCTL (ENSPPRG00000002315) #20	SMAD6 (ENSPPRG00000002502) #21	SMAD3 (ENSPPRG00000003306) #22	AAGAB (ENSPPRG00000003564) #23	IQCH (ENSPPRG00000005647) #25	C15orf61 (ENSPPRG00000005929) #26	ENSPPRG00000005987	MAP2K5 (ENSPPRG00000006923) #27	SKOR1 (ENSPPRG00000007828) #28	PIAS1 (ENSPPRG00000008695) #29	CALML4 (ENSPPRG00000009014) #30	CLN6 (ENSPPRG00000011593) #31	FEM1B (ENSPPRG00000011995) #33	ITGA11 (ENSPPRG00000014106) #34	CORO2B (ENSPPRG00000015002) #35	ENSPPRG00000015452 #36	NOX5 (ENSPPRG00000020694)	GLCE (ENSPPRG00000021675)
Tiger	MODERN SPECIES	204	DPP8 (ENSPTIG00000008731) #7	ENSPTIG00000012013	HACD3 (ENSPTIG00000012698) #8	INTS14 (ENSPTIG00000014987) #9	SLC24A1 (ENSPTIG00000017335) #10	DENND4A (ENSPTIG00000018874) #11	RAB11A (ENSPTIG00000021637) #12	MEGF11 (ENSPTIG00000001273) #13	DIS3L (ENSPTIG00000009042) #14	ENSPTIG00000009826	MAP2K1 (ENSPTIG00000010070) #16	SNAPC5 (ENSPTIG00000010493) #17	ENSPTIG00000010784 #18	ZWILCH (ENSPTIG00000011456) #19	LCTL (ENSPTIG00000012036) #20	SMAD3 (ENSPTIG00000012606) #22	AAGAB (ENSPTIG00000013747) #23	IQCH (ENSPTIG00000014096) #25	ENSPTIG00000015816	MAP2K5 (ENSPTIG00000016073) #27	ENSPTIG00000017654	PIAS1 (ENSPTIG00000017759) #29	CALML4 (ENSPTIG00000018784) #30	CLN6 (ENSPTIG00000019082) #31	FEM1B (ENSPTIG00000019928) #33	ITGA11 (ENSPTIG00000020061) #34	CORO2B (ENSPTIG00000001549) #35	ENSPTIG00000006135 #36	NOX5 (ENSPTIG00000006417)	GLCE (ENSPTIG00000008506)	PAQR5 (ENSPTIG00000008616)
Cat	MODERN SPECIES	237	DPP8 (ENSFCAG00000025415) #7	HACD3 (ENSFCAG00000008691) #8	INTS14 (ENSFCAG00000008692) #9	SLC24A1 (ENSFCAG00000008693) #10	DENND4A (ENSFCAG00000008694) #11	RAB11A (ENSFCAG00000030174) #12	MEGF11 (ENSFCAG00000003091) #13	DIS3L (ENSFCAG00000029869) #14	TIPIN (ENSFCAG00000035191) #15	MAP2K1 (ENSFCAG00000028389) #16	SNAPC5 (ENSFCAG00000012291) #17	RPL4 (ENSFCAG00000012293) #18	ZWILCH (ENSFCAG00000012294) #19	LCTL (ENSFCAG00000012298) #20	SMAD6 (ENSFCAG00000012300) #21	SMAD3 (ENSFCAG00000027081) #22	AAGAB (ENSFCAG00000004418) #23	IQCH (ENSFCAG00000004419) #25	CB3H15orf61 (ENSFCAG00000040546) #26	MAP2K5 (ENSFCAG00000004420) #27	SKOR1 (ENSFCAG00000043709) #28	PIAS1 (ENSFCAG00000018490) #29	CALML4 (ENSFCAG00000006497) #30	CLN6 (ENSFCAG00000025647) #31	ENSFCAG00000049632	FEM1B (ENSFCAG00000045964) #33	ITGA11 (ENSFCAG00000006499) #34	CORO2B (ENSFCAG00000006500) #35	ENSFCAG00000034954 #36	SPESP1 (ENSFCAG00000048668) #37	NOX5 (ENSFCAG00000001372)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Suina	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Pig	MODERN SPECIES		HACD3 (ENSSSCG00000004935) #8	INTS14 (ENSSSCG00000004936) #9	SLC24A1 (ENSSSCG00000004937) #10	DENND4A (ENSSSCG00000004938) #11	RAB11A (ENSSSCG00000032312) #12	MEGF11 (ENSSSCG00000004939) #13	DIS3L (ENSSSCG00000004941) #14	TIPIN (ENSSSCG00000004942) #15	MAP2K1 (ENSSSCG00000004943) #16	SNAPC5 (ENSSSCG00000038941) #17	RPL4 (ENSSSCG00000004945) #18	ZWILCH (ENSSSCG00000004946) #19	ENSSSCG00000051767	LCTL (ENSSSCG00000004947) #20	SMAD6 (ENSSSCG00000004948) #21	SMAD3 (ENSSSCG00000004952) #22	AAGAB (ENSSSCG00000004951) #23	ENSSSCG00000057448 #25	ENSSSCG00000034963 #25	C15orf61 (ENSSSCG00000004954) #26	MAP2K5 (ENSSSCG00000004955) #27	SKOR1 (ENSSSCG00000004956) #28	PIAS1 (ENSSSCG00000004958) #29	CALML4 (ENSSSCG00000026517) #30	CLN6 (ENSSSCG00000004957) #31	FEM1B (ENSSSCG00000022419) #33	ITGA11 (ENSSSCG00000004961) #34	CORO2B (ENSSSCG00000004962) #35	ENSSSCG00000004963 #36	SPESP1 (ENSSSCG00000032244) #37	NOX5 (ENSSSCG00000004966)
Chacoan peccary	MODERN SPECIES	786	DPP8 (ENSCWAG00000018161) #7	HACD3 (ENSCWAG00000017975) #8	INTS14 (ENSCWAG00000017595) #9	SLC24A1 (ENSCWAG00000017106) #10	DENND4A (ENSCWAG00000016363) #11	RAB11A (ENSCWAG00000016259) #12	MEGF11 (ENSCWAG00000015726) #13	DIS3L (ENSCWAG00000015597) #14	TIPIN (ENSCWAG00000015560) #15	MAP2K1 (ENSCWAG00000015519) #16	SNAPC5 (ENSCWAG00000015485) #17	RPL4 (ENSCWAG00000015376) #18	ZWILCH (ENSCWAG00000015266) #19	LCTL (ENSCWAG00000015109) #20	SMAD6 (ENSCWAG00000015079) #21	SMAD3 (ENSCWAG00000015026) #22	AAGAB (ENSCWAG00000014993) #23	IQCH (ENSCWAG00000014432) #25	C15orf61 (ENSCWAG00000014382) #26	MAP2K5 (ENSCWAG00000013886) #27	SKOR1 (ENSCWAG00000013676) #28	PIAS1 (ENSCWAG00000013465) #29	CALML4 (ENSCWAG00000013422) #30	CLN6 (ENSCWAG00000013181) #31	FEM1B (ENSCWAG00000013140) #33	ITGA11 (ENSCWAG00000013057) #34	CORO2B (ENSCWAG00000012937) #35	ENSCWAG00000012876 #36	SPESP1 (ENSCWAG00000012853) #37	GLCE (ENSCWAG00000012796)	PAQR5 (ENSCWAG00000012711)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Camelidae	ANCESTRAL SPECIES	83	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31
Arabian camel	MODERN SPECIES	32	HACD3 (ENSCDRG00005001929) #8	INTS14 (ENSCDRG00005001994) #9	SLC24A1 (ENSCDRG00005002129) #10	DENND4A (ENSCDRG00005002286) #11	RAB11A (ENSCDRG00005002443) #12	MEGF11 (ENSCDRG00005002479) #13	DIS3L (ENSCDRG00005002526) #14	TIPIN (ENSCDRG00005002562) #15	MAP2K1 (ENSCDRG00005002580) #16	SNAPC5 (ENSCDRG00005002604) #17	ENSCDRG00005002627 #18	ZWILCH (ENSCDRG00005002673) #19	LCTL (ENSCDRG00005002712) #20	ENSCDRG00005002745	ENSCDRG00005002755 #21	SMAD3 (ENSCDRG00005002780) #22	AAGAB (ENSCDRG00005002843) #23	IQCH (ENSCDRG00005002929) #25	C15orf61 (ENSCDRG00005003109) #26	MAP2K5 (ENSCDRG00005003152) #27	PIAS1 (ENSCDRG00005003494) #29	ENSCDRG00005003580	CALML4 (ENSCDRG00005003629) #30	CLN6 (ENSCDRG00005003662) #31	ENSCDRG00005003720	ENSCDRG00005003749	RAB8B (ENSCDRG00005003808)	APH1B (ENSCDRG00005003835)	CA12 (ENSCDRG00005003913)	ENSCDRG00005004006	ENSCDRG00005006370
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Pecora	ANCESTRAL SPECIES	6	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Yarkand deer	MODERN SPECIES	3	SLC24A1 (ENSCHYG00000008613) #10	DENND4A (ENSCHYG00000008838) #11	ENSCHYG00000009117	ENSCHYG00000009145 #12	MEGF11 (ENSCHYG00000009296) #13	DIS3L (ENSCHYG00000010099) #14	TIPIN (ENSCHYG00000010297) #15	MAP2K1 (ENSCHYG00000010364) #16	ENSCHYG00000010432	SNAPC5 (ENSCHYG00000010450) #17	ENSCHYG00000010506 #18	ZWILCH (ENSCHYG00000010774) #19	LCTL (ENSCHYG00000011283) #20	ENSCHYG00000011323	SMAD6 (ENSCHYG00000011380) #21	SMAD3 (ENSCHYG00000011473) #22	AAGAB (ENSCHYG00000011610) #23	IQCH (ENSCHYG00000011825) #25	C15orf61 (ENSCHYG00000012160) #26	MAP2K5 (ENSCHYG00000012261) #27	SKOR1 (ENSCHYG00000013681) #28	PIAS1 (ENSCHYG00000013992) #29	CALML4 (ENSCHYG00000014198) #30	CLN6 (ENSCHYG00000014290) #31	FEM1B (ENSCHYG00000014524) #33	ITGA11 (ENSCHYG00000014651) #34	CORO2B (ENSCHYG00000016934) #35	ENSCHYG00000017234 #36	SPESP1 (ENSCHYG00000017531) #37	NOX5 (ENSCHYG00000017570)	ENSCHYG00000017784
Percora_a	ANCESTRAL SPECIES	8	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Bovidae	ANCESTRAL SPECIES	7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Bovinae	ANCESTRAL SPECIES	33	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.ib #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Bos	ANCESTRAL SPECIES	31	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.ib #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.e.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Bos_a	ANCESTRAL SPECIES	40							ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.e.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00960000188521	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Wild yak	MODERN SPECIES	552								DIS3L (ENSBMUG00000005883) #14	TIPIN (ENSBMUG00000005904) #15	MAP2K1 (ENSBMUG00000005924) #16	SNAPC5 (ENSBMUG00000005936) #17	ENSBMUG00000005950 #18	ZWILCH (ENSBMUG00000006013) #19	LCTL (ENSBMUG00000006040) #20	ENSBMUG00000006090 #21	SMAD3 (ENSBMUG00000006115) #22	AAGAB (ENSBMUG00000006202) #23	IQCH (ENSBMUG00000006265) #25	ENSBMUG00000006346	MAP2K5 (ENSBMUG00000006406) #27	SKOR1 (ENSBMUG00000006456) #28	PIAS1 (ENSBMUG00000006486) #29	CALML4 (ENSBMUG00000006499) #30	CLN6 (ENSBMUG00000006571) #31	FEM1B (ENSBMUG00000006589) #33	ITGA11 (ENSBMUG00000006621) #34	CORO2B (ENSBMUG00000006646) #35	ENSBMUG00000006692 #36
Domestic yak	MODERN SPECIES	2	HACD3 (ENSBGRG00000025307) #8	INTS14 (ENSBGRG00000025180) #9	SLC24A1 (ENSBGRG00000025095) #10	ENSBGRG00000025078	DENND4A (ENSBGRG00000024953) #11	ENSBGRG00000024884 #12	MEGF11 (ENSBGRG00000024819) #13	DIS3L (ENSBGRG00000024760) #14	TIPIN (ENSBGRG00000024730) #15	MAP2K1 (ENSBGRG00000024678) #16	SNAPC5 (ENSBGRG00000024649) #17	ENSBGRG00000024489 #18	ZWILCH (ENSBGRG00000024356) #19	LCTL (ENSBGRG00000024229) #20	SMAD6 (ENSBGRG00000024050) #21	SMAD3 (ENSBGRG00000023965) #22	AAGAB (ENSBGRG00000023783) #23	IQCH (ENSBGRG00000023490) #25	ENSBGRG00000023451 #26	ENSBGRG00000023428	MAP2K5 (ENSBGRG00000023013) #27	SKOR1 (ENSBGRG00000022855) #28	PIAS1 (ENSBGRG00000022493) #29	CALML4 (ENSBGRG00000022400) #30	CLN6 (ENSBGRG00000022143) #31	FEM1B (ENSBGRG00000022079) #33	ITGA11 (ENSBGRG00000021881) #34	CORO2B (ENSBGRG00000021747) #35	ENSBGRG00000021463 #36	ENSBGRG00000021382 #37	NOX5 (ENSBGRG00000021070)
Bos_b	ANCESTRAL SPECIES	28	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.ib #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.e.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Cow	MODERN SPECIES	1	HACD3 (ENSBTAG00000015155) #8	INTS14 (ENSBTAG00000015158) #9	SLC24A1 (ENSBTAG00000025826) #10	DENND4A (ENSBTAG00000017095) #11	RAB11A (ENSBTAG00000018959) #12	MEGF11 (ENSBTAG00000034140) #13	DIS3L (ENSBTAG00000000371) #14	TIPIN (ENSBTAG00000000372) #15	MAP2K1 (ENSBTAG00000033983) #16	SNAPC5 (ENSBTAG00000005210) #17	RPL4 (ENSBTAG00000005211) #18	ZWILCH (ENSBTAG00000005213) #19	LCTL (ENSBTAG00000005214) #20	ENSBTAG00000050356	SMAD6 (ENSBTAG00000000625) #21	SMAD3 (ENSBTAG00000012599) #22	AAGAB (ENSBTAG00000040368) #23	IQCH (ENSBTAG00000013638) #25	C10H15orf61 (ENSBTAG00000045628) #26	MAP2K5 (ENSBTAG00000000218) #27	PIAS1 (ENSBTAG00000005564) #29	CALML4 (ENSBTAG00000025822) #30	CLN6 (ENSBTAG00000005565) #31	FEM1B (ENSBTAG00000008378) #33	ITGA11 (ENSBTAG00000008380) #34	CORO2B (ENSBTAG00000012681) #35	ANP32A (ENSBTAG00000012365) #36	SPESP1 (ENSBTAG00000005994) #37	NOX5 (ENSBTAG00000009030)	GLCE (ENSBTAG00000001405)	PAQR5 (ENSBTAG00000020352)
Hybrid Bos Indicus	MODERN SPECIES	1	DENND4A (ENSBIXG00005007862) #11	HACD3 (ENSBIXG00005029324) #8	INTS14 (ENSBIXG00005029402) #9	SLC24A1 (ENSBIXG00005029443) #10	ENSBIXG00005029457	RAB11A (ENSBIXG00005029469) #12	MEGF11 (ENSBIXG00005029582) #13	DIS3L (ENSBIXG00005029839) #14	TIPIN (ENSBIXG00005029852) #15	ENSBIXG00005029869 #16	SNAPC5 (ENSBIXG00005029881) #17	ENSBIXG00005029889 #18	ZWILCH (ENSBIXG00005029921) #19	LCTL (ENSBIXG00005029961) #20	SMAD6 (ENSBIXG00005030012) #21	SMAD3 (ENSBIXG00005030065) #22	AAGAB (ENSBIXG00005030085) #23	IQCH (ENSBIXG00005030120) #25	C15orf61 (ENSBIXG00005030179) #26	MAP2K5 (ENSBIXG00005030309) #27	SKOR1 (ENSBIXG00005030471) #28	PIAS1 (ENSBIXG00005030503) #29	CALML4 (ENSBIXG00005030510) #30	ENSBIXG00005030548 #31	FEM1B (ENSBIXG00005030567) #33	ITGA11 (ENSBIXG00005030585) #34	CORO2B (ENSBIXG00005030625) #35	ENSBIXG00005030667 #36	SPESP1 (ENSBIXG00005030688) #37	NOX5 (ENSBIXG00005030704)	GLCE (ENSBIXG00005030727)
American bison	MODERN SPECIES	2972	DPP8 (ENSBBBG00000001480) #7	HACD3 (ENSBBBG00000009384) #8	INTS14 (ENSBBBG00000001482) #9	SLC24A1 (ENSBBBG00000009385) #10	DENND4A (ENSBBBG00000009388) #11	ENSBBBG00000001484 #12	MEGF11 (ENSBBBG00000009393) #13	DIS3L (ENSBBBG00000001485) #14	ENSBBBG00000009401	MAP2K1 (ENSBBBG00000009402) #16	SNAPC5 (ENSBBBG00000009405) #17	RPL4 (ENSBBBG00000009410) #18	ZWILCH (ENSBBBG00000007486) #19	LCTL (ENSBBBG00000009415) #20	SMAD6 (ENSBBBG00000001493) #21	SMAD3 (ENSBBBG00000009419) #22	AAGAB (ENSBBBG00000009422) #23	IQCH (ENSBBBG00000009426) #25	C15orf61 (ENSBBBG00000009428) #26	MAP2K5 (ENSBBBG00000009430) #27	PIAS1 (ENSBBBG00000009435) #29	CALML4 (ENSBBBG00000009437) #30	CLN6 (ENSBBBG00000001505) #31	FEM1B (ENSBBBG00000009440) #33	ITGA11 (ENSBBBG00000009443) #34	CORO2B (ENSBBBG00000009445) #35	ENSBBBG00000009447 #36	SPESP1 (ENSBBBG00000001512) #37	NOX5 (ENSBBBG00000009452)	GLCE (ENSBBBG00000009453)	PAQR5 (ENSBBBG00000009457)
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.o #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Rambouillet Sheep	MODERN SPECIES	23	DPP8 (ENSOARG00020005690) #7	HACD3 (ENSOARG00020005830) #8	INTS14 (ENSOARG00020006021) #9	SLC24A1 (ENSOARG00020006188) #10	DENND4A (ENSOARG00020006221) #11	ENSOARG00020006812 #12	MEGF11 (ENSOARG00020006928) #13	DIS3L (ENSOARG00020007756) #14	TIPIN (ENSOARG00020007825) #15	MAP2K1 (ENSOARG00020007890) #16	SNAPC5 (ENSOARG00020007973) #17	RPL4 (ENSOARG00020008040) #18	ZWILCH (ENSOARG00020008203) #19	LCTL (ENSOARG00020008384) #20	SMAD6 (ENSOARG00020008552) #21	SMAD3 (ENSOARG00020008589) #22	ENSOARG00020008703 #23	IQCH (ENSOARG00020008820) #25	C15orf61 (ENSOARG00020009584) #26	MAP2K5 (ENSOARG00020009665) #27	SKOR1 (ENSOARG00020010969) #28	PIAS1 (ENSOARG00020011172) #29	CALML4 (ENSOARG00020011634) #30	CLN6 (ENSOARG00020011715) #31	FEM1B (ENSOARG00020011984) #33	ITGA11 (ENSOARG00020012015) #34	CORO2B (ENSOARG00020012576) #35	ENSOARG00020012822 #36	SPESP1 (ENSOARG00020012911) #37	NOX5 (ENSOARG00020012967)	GLCE (ENSOARG00020013246)
Goat	MODERN SPECIES	1	INTS14 (ENSCHIG00000012971) #9	SLC24A1 (ENSCHIG00000023644) #10	ENSCHIG00000015128	DENND4A (ENSCHIG00000024015) #11	ENSCHIG00000012183 #12	ENSCHIG00000006809	MEGF11 (ENSCHIG00000023140) #13	DIS3L (ENSCHIG00000009744) #14	ENSCHIG00000000481 #15	MAP2K1 (ENSCHIG00000021340) #16	SNAPC5 (ENSCHIG00000011315) #17	RPL4 (ENSCHIG00000012421) #18	ZWILCH (ENSCHIG00000015830) #19	LCTL (ENSCHIG00000017181) #20	SMAD6 (ENSCHIG00000012651) #21	SMAD3 (ENSCHIG00000013774) #22	ENSCHIG00000015028 #23	IQCH (ENSCHIG00000009034) #25	C15orf61 (ENSCHIG00000026630) #26	MAP2K5 (ENSCHIG00000022039) #27	SKOR1 (ENSCHIG00000017580) #28	ENSCHIG00000010951	ENSCHIG00000003884	PIAS1 (ENSCHIG00000014001) #29	CALML4 (ENSCHIG00000005207) #30	CLN6 (ENSCHIG00000024128) #31	FEM1B (ENSCHIG00000023393) #33	ITGA11 (ENSCHIG00000025296) #34	CORO2B (ENSCHIG00000023253) #35	ENSCHIG00000011806 #36	SPESP1 (ENSCHIG00000013213) #37
Siberian musk deer	MODERN SPECIES	70	HACD3 (ENSMMSG00000000485) #8	INTS14 (ENSMMSG00000000581) #9	SLC24A1 (ENSMMSG00000000735) #10	ENSMMSG00000000783	DENND4A (ENSMMSG00000000845) #11	ENSMMSG00000000971 #12	MEGF11 (ENSMMSG00000001023) #13	DIS3L (ENSMMSG00000001148) #14	TIPIN (ENSMMSG00000001178) #15	MAP2K1 (ENSMMSG00000001210) #16	SNAPC5 (ENSMMSG00000001249) #17	ENSMMSG00000001277 #18	ZWILCH (ENSMMSG00000001358) #19	LCTL (ENSMMSG00000001442) #20	SMAD6 (ENSMMSG00000001473) #21	SMAD3 (ENSMMSG00000001493) #22	AAGAB (ENSMMSG00000001517) #23	IQCH (ENSMMSG00000001575) #25	C15orf61 (ENSMMSG00000001796) #26	MAP2K5 (ENSMMSG00000001850) #27	SKOR1 (ENSMMSG00000002112) #28	PIAS1 (ENSMMSG00000002174) #29	CALML4 (ENSMMSG00000002206) #30	CLN6 (ENSMMSG00000002230) #31	FEM1B (ENSMMSG00000002327) #33	ITGA11 (ENSMMSG00000002350) #34	CORO2B (ENSMMSG00000002385) #35	ENSMMSG00000002437	ENSMMSG00000002461 #36	ENSMMSG00000002508	NOX5 (ENSMMSG00000002533)
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Odontoceti	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT01010000222830.d.a	ENSGT00390000006043
Monodontidae	ANCESTRAL SPECIES	27	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT00940000158086	ENSGT00940000157725	ENSGT00860000136093.c	ENSGT00390000008748.b	ENSGT00940000164579.e.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a
Beluga whale	MODERN SPECIES	20	DENND4A (ENSDLEG00000009569) #11	RAB11A (ENSDLEG00000009643) #12	MEGF11 (ENSDLEG00000009720) #13	DIS3L (ENSDLEG00000009982) #14	TIPIN (ENSDLEG00000010313) #15	ENSDLEG00000010343	MAP2K1 (ENSDLEG00000010364) #16	SNAPC5 (ENSDLEG00000010421) #17	RPL4 (ENSDLEG00000010430) #18	ZWILCH (ENSDLEG00000010482) #19	LCTL (ENSDLEG00000010607) #20	ENSDLEG00000010647	ENSDLEG00000010657	SMAD6 (ENSDLEG00000010676) #21	ENSDLEG00000010689	SMAD3 (ENSDLEG00000010707) #22	AAGAB (ENSDLEG00000010803) #23	IQCH (ENSDLEG00000010864) #25	CUNH15orf61 (ENSDLEG00000010984) #26	MAP2K5 (ENSDLEG00000011046) #27	SKOR1 (ENSDLEG00000011320) #28	ENSDLEG00000011378	ENSDLEG00000011393	PIAS1 (ENSDLEG00000011410) #29	CALML4 (ENSDLEG00000011480) #30	CLN6 (ENSDLEG00000011495) #31	FEM1B (ENSDLEG00000011544) #33	ITGA11 (ENSDLEG00000000304) #34	CORO2B (ENSDLEG00000000393) #35	ANP32A (ENSDLEG00000000431) #36	SPESP1 (ENSDLEG00000000475) #37
Narwhal	MODERN SPECIES	308	SLC24A1 (ENSMMNG00015007028) #10	DENND4A (ENSMMNG00015007114) #11	RAB11A (ENSMMNG00015007170) #12	MEGF11 (ENSMMNG00015007280) #13	DIS3L (ENSMMNG00015007393) #14	TIPIN (ENSMMNG00015007474) #15	ENSMMNG00015007536	MAP2K1 (ENSMMNG00015007579) #16	SNAPC5 (ENSMMNG00015007601) #17	ENSMMNG00015007652 #18	ZWILCH (ENSMMNG00015007746) #19	LCTL (ENSMMNG00015007784) #20	ENSMMNG00015007816	SMAD6 (ENSMMNG00015007869) #21	ENSMMNG00015007889	SMAD3 (ENSMMNG00015007909) #22	AAGAB (ENSMMNG00015007942) #23	IQCH (ENSMMNG00015008052) #25	C15orf61 (ENSMMNG00015008139) #26	MAP2K5 (ENSMMNG00015008216) #27	SKOR1 (ENSMMNG00015008331) #28	ENSMMNG00015008358	PIAS1 (ENSMMNG00015008373) #29	CALML4 (ENSMMNG00015008408) #30	CLN6 (ENSMMNG00015008469) #31	FEM1B (ENSMMNG00015008513) #33	ITGA11 (ENSMMNG00015008533) #34	CORO2B (ENSMMNG00015008567) #35	ENSMMNG00015008598 #36	SPESP1 (ENSMMNG00015008626) #37	ENSMMNG00015008639
Vaquita	MODERN SPECIES	11	SLC24A1 (ENSPSNG00000002890) #10	DENND4A (ENSPSNG00000002770) #11	ENSPSNG00000002715	RAB11A (ENSPSNG00000002694) #12	MEGF11 (ENSPSNG00000002539) #13	ENSPSNG00000002464 #14	TIPIN (ENSPSNG00000002436) #15	MAP2K1 (ENSPSNG00000002407) #16	SNAPC5 (ENSPSNG00000002388) #17	ENSPSNG00000002352 #18	ZWILCH (ENSPSNG00000002336) #19	LCTL (ENSPSNG00000002318) #20	ENSPSNG00000002306	SMAD6 (ENSPSNG00000002293) #21	ENSPSNG00000002286	SMAD3 (ENSPSNG00000002263) #22	AAGAB (ENSPSNG00000002239) #23	IQCH (ENSPSNG00000002126) #25	C15orf61 (ENSPSNG00000002043) #26	MAP2K5 (ENSPSNG00000001943) #27	SKOR1 (ENSPSNG00000001839) #28	ENSPSNG00000001804	PIAS1 (ENSPSNG00000001758) #29	CALML4 (ENSPSNG00000001723) #30	CLN6 (ENSPSNG00000001671) #31	FEM1B (ENSPSNG00000001608) #33	ITGA11 (ENSPSNG00000001465) #34	CORO2B (ENSPSNG00000001338) #35	ENSPSNG00000001312 #36	SPESP1 (ENSPSNG00000001290) #37	ENSPSNG00000001278
Dolphin	MODERN SPECIES	1671																SMAD3 (ENSTTRG00000003030) #22	AAGAB (ENSTTRG00000003032) #23	IQCH (ENSTTRG00000003033) #25	C15orf61 (ENSTTRG00000003034) #26	MAP2K5 (ENSTTRG00000003035) #27	SKOR1 (ENSTTRG00000003036) #28
Sperm whale	MODERN SPECIES	2	INTS14 (ENSPCTG00005015317) #9	SLC24A1 (ENSPCTG00005015689) #10	DENND4A (ENSPCTG00005016168) #11	RAB11A (ENSPCTG00005016434) #12	MEGF11 (ENSPCTG00005016590) #13	DIS3L (ENSPCTG00005017408) #14	TIPIN (ENSPCTG00005017493) #15	MAP2K1 (ENSPCTG00005017538) #16	SNAPC5 (ENSPCTG00005017569) #17	ENSPCTG00005017611 #18	ZWILCH (ENSPCTG00005017727) #19	LCTL (ENSPCTG00005017782) #20	ENSPCTG00005018004	SMAD6 (ENSPCTG00005018032) #21	ENSPCTG00005018068	SMAD3 (ENSPCTG00005018084) #22	AAGAB (ENSPCTG00005018169) #23	IQCH (ENSPCTG00005018285) #25	C11H15orf61 (ENSPCTG00005018901) #26	MAP2K5 (ENSPCTG00005018992) #27	SKOR1 (ENSPCTG00005019628) #28	ENSPCTG00005019847	ENSPCTG00005019890	PIAS1 (ENSPCTG00005019931) #29	CALML4 (ENSPCTG00005019999) #30	CLN6 (ENSPCTG00005020048) #31	FEM1B (ENSPCTG00005020203) #33	ITGA11 (ENSPCTG00005020249) #34	SPESP1 (ENSPCTG00005020391) #37	GLCE (ENSPCTG00005020426)	PAQR5 (ENSPCTG00005020467)
Blue whale	MODERN SPECIES	11	HACD3 (ENSBMSG00010004707) #8	INTS14 (ENSBMSG00010004651) #9	SLC24A1 (ENSBMSG00010004497) #10	DENND4A (ENSBMSG00010004402) #11	RAB11A (ENSBMSG00010004363) #12	MEGF11 (ENSBMSG00010004218) #13	DIS3L (ENSBMSG00010004171) #14	ENSBMSG00010004151 #15	ENSBMSG00010004137	MAP2K1 (ENSBMSG00010004109) #16	ENSBMSG00010004081 #17	ENSBMSG00010004041 #18	ZWILCH (ENSBMSG00010004025) #19	LCTL (ENSBMSG00010003979) #20	SMAD6 (ENSBMSG00010003960) #21	SMAD3 (ENSBMSG00010003929) #22	AAGAB (ENSBMSG00010003912) #23	IQCH (ENSBMSG00010003720) #25	C15orf61 (ENSBMSG00010003681) #26	MAP2K5 (ENSBMSG00010003598) #27	SKOR1 (ENSBMSG00010003555) #28	PIAS1 (ENSBMSG00010003520) #29	CALML4 (ENSBMSG00010003507) #30	CLN6 (ENSBMSG00010003453) #31	FEM1B (ENSBMSG00010003441) #33	ITGA11 (ENSBMSG00010003422) #34	ENSBMSG00010003412	CORO2B (ENSBMSG00010003388) #35	ENSBMSG00010003371 #36	SPESP1 (ENSBMSG00010003359) #37	ENSBMSG00010003347
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591	ENSGT00390000006043
Xenarthra	ANCESTRAL SPECIES	973																ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908.i #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27
Armadillo	MODERN SPECIES	4622																SMAD3 (ENSDNOG00000044090) #22	AAGAB (ENSDNOG00000025858) #23	ENSDNOG00000031612 #25
Sloth	MODERN SPECIES	5512																SMAD3 (ENSCHOG00000001562) #22
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34
Elephant	MODERN SPECIES	466	IGDCC3 (ENSLAFG00000000244)	IGDCC4 (ENSLAFG00000022955)	DPP8 (ENSLAFG00000013000) #7	HACD3 (ENSLAFG00000010226) #8	INTS14 (ENSLAFG00000010235) #9	DENND4A (ENSLAFG00000010247) #11	RAB11A (ENSLAFG00000011418) #12	MEGF11 (ENSLAFG00000011424) #13	DIS3L (ENSLAFG00000006866) #14	TIPIN (ENSLAFG00000026016) #15	MAP2K1 (ENSLAFG00000006487) #16	SNAPC5 (ENSLAFG00000006491) #17	RPL4 (ENSLAFG00000006494) #18	LCTL (ENSLAFG00000012306) #20	SMAD6 (ENSLAFG00000013285) #21	SMAD3 (ENSLAFG00000021903) #22	AAGAB (ENSLAFG00000022590) #23	IQCH (ENSLAFG00000011381) #25	C15orf61 (ENSLAFG00000000737) #26	MAP2K5 (ENSLAFG00000001427) #27	SKOR1 (ENSLAFG00000018189) #28	ENSLAFG00000029244	PIAS1 (ENSLAFG00000018150) #29	CALML4 (ENSLAFG00000021943) #30	CLN6 (ENSLAFG00000029055) #31	FEM1B (ENSLAFG00000013998) #33	ITGA11 (ENSLAFG00000018505) #34
Hyrax	MODERN SPECIES	5063																SMAD3 (ENSPCAG00000008103) #22	AAGAB (ENSPCAG00000008177) #23	IQCH (ENSPCAG00000008236) #25
Tenrec	MODERN SPECIES	5988																SMAD3 (ENSETEG00000003356) #22	ENSETEG00000003361 #23
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
koala	MODERN SPECIES		DPP8 (ENSPCIG00000024105) #7	HACD3 (ENSPCIG00000008851) #8	INTS14 (ENSPCIG00000008852) #9	ENSPCIG00000008854 #10	DENND4A (ENSPCIG00000006919) #11	RAB11A (ENSPCIG00000006878) #12	MEGF11 (ENSPCIG00000006843) #13	DIS3L (ENSPCIG00000006827) #14	TIPIN (ENSPCIG00000006818) #15	MAP2K1 (ENSPCIG00000006816) #16	ENSPCIG00000006812 #17	RPL4 (ENSPCIG00000006799) #18	ZWILCH (ENSPCIG00000006798) #19	LCTL (ENSPCIG00000006796) #20	SMAD6 (ENSPCIG00000006792) #21	SMAD3 (ENSPCIG00000014066) #22	AAGAB (ENSPCIG00000014065) #23	IQCH (ENSPCIG00000023221) #25	C15orf61 (ENSPCIG00000023229) #26	MAP2K5 (ENSPCIG00000023233) #27	SKOR1 (ENSPCIG00000023240) #28	PIAS1 (ENSPCIG00000023245) #29	CALML4 (ENSPCIG00000023241) #30	CLN6 (ENSPCIG00000023237) #31	ENSPCIG00000023218	ITGA11 (ENSPCIG00000023209) #34	CORO2B (ENSPCIG00000023206) #35	ENSPCIG00000023204 #36	NOX5 (ENSPCIG00000013880)	GLCE (ENSPCIG00000013869)	PAQR5 (ENSPCIG00000013860)
Common wonbat	MODERN SPECIES	581	DPP8 (ENSVURG00010016847) #7	HACD3 (ENSVURG00010016877) #8	INTS14 (ENSVURG00010016912) #9	ENSVURG00010017031 #10	DENND4A (ENSVURG00010017069) #11	RAB11A (ENSVURG00010017156) #12	MEGF11 (ENSVURG00010017205) #13	DIS3L (ENSVURG00010017304) #14	TIPIN (ENSVURG00010017324) #15	MAP2K1 (ENSVURG00010017352) #16	SNAPC5 (ENSVURG00010017361) #17	RPL4 (ENSVURG00010017371) #18	ZWILCH (ENSVURG00010017403) #19	LCTL (ENSVURG00010017479) #20	SMAD6 (ENSVURG00010017499) #21	SMAD3 (ENSVURG00010017513) #22	AAGAB (ENSVURG00010017532) #23	IQCH (ENSVURG00010017554) #25	ENSVURG00010017577	C15orf61 (ENSVURG00010017585) #26	MAP2K5 (ENSVURG00010017619) #27	SKOR1 (ENSVURG00010017727) #28	PIAS1 (ENSVURG00010017756) #29	CALML4 (ENSVURG00010017772) #30	CLN6 (ENSVURG00010017776) #31	FEM1B (ENSVURG00010017788) #33	ITGA11 (ENSVURG00010017821) #34	CORO2B (ENSVURG00010018179) #35	ENSVURG00010018193 #36	NOX5 (ENSVURG00010018209)	GLCE (ENSVURG00010018222)
Wallaby	MODERN SPECIES	7451																SMAD3 (ENSMEUG00000016668) #22	ENSMEUG00000016678 #23	ENSMEUG00000016685 #25
Tasmanian devil	MODERN SPECIES	1	DPP8 (ENSSHAG00000012989) #7	HACD3 (ENSSHAG00000013349) #8	INTS14 (ENSSHAG00000013462) #9	SLC24A1 (ENSSHAG00000013623) #10	DENND4A (ENSSHAG00000002367) #11	RAB11A (ENSSHAG00000006622) #12	MEGF11 (ENSSHAG00000006869) #13	DIS3L (ENSSHAG00000010970) #14	TIPIN (ENSSHAG00000011237) #15	MAP2K1 (ENSSHAG00000029460) #16	SNAPC5 (ENSSHAG00000025154) #17	RPL4 (ENSSHAG00000002421) #18	ZWILCH (ENSSHAG00000002622) #19	LCTL (ENSSHAG00000003461) #20	SMAD6 (ENSSHAG00000007962) #21	SMAD3 (ENSSHAG00000023904) #22	AAGAB (ENSSHAG00000012729) #23	IQCH (ENSSHAG00000012985) #25	C15orf61 (ENSSHAG00000031222) #26	MAP2K5 (ENSSHAG00000014400) #27	SKOR1 (ENSSHAG00000027578) #28	PIAS1 (ENSSHAG00000022295) #29	CALML4 (ENSSHAG00000028912) #30	ENSSHAG00000003272 #31	FEM1B (ENSSHAG00000030104) #33	ITGA11 (ENSSHAG00000005006) #34	CORO2B (ENSSHAG00000009104) #35	ENSSHAG00000010906 #36	NOX5 (ENSSHAG00000012412)	GLCE (ENSSHAG00000023440)	ENSSHAG00000014510
Opossum	MODERN SPECIES		HACD3 (ENSMODG00000009893) #8	INTS14 (ENSMODG00000009876) #9	SLC24A1 (ENSMODG00000009861) #10	DENND4A (ENSMODG00000009838) #11	RAB11A (ENSMODG00000009810) #12	MEGF11 (ENSMODG00000009795) #13	DIS3L (ENSMODG00000009760) #14	TIPIN (ENSMODG00000009724) #15	ENSMODG00000039883	MAP2K1 (ENSMODG00000009715) #16	ENSMODG00000025470 #17	RPL4 (ENSMODG00000009657) #18	ZWILCH (ENSMODG00000009648) #19	LCTL (ENSMODG00000009632) #20	SMAD6 (ENSMODG00000009620) #21	SMAD3 (ENSMODG00000038564) #22	ENSMODG00000009585 #23	ENSMODG00000009566 #25	C15orf61 (ENSMODG00000036723) #26	MAP2K5 (ENSMODG00000009527) #27	SKOR1 (ENSMODG00000024583) #28	PIAS1 (ENSMODG00000009467) #29	CALML4 (ENSMODG00000009430) #30	CLN6 (ENSMODG00000009425) #31	FEM1B (ENSMODG00000051021) #33	ITGA11 (ENSMODG00000009413) #34	ENSMODG00000040904	CORO2B (ENSMODG00000009371) #35	ENSMODG00000009359 #36	NOX5 (ENSMODG00000009308)	GLCE (ENSMODG00000042930)
Platypus	MODERN SPECIES	16	DPP8 (ENSOANG00000008346) #7	ENSOANG00000046972 #8	INTS14 (ENSOANG00000001669) #9	ENSOANG00000043682 #10	DENND4A (ENSOANG00000044994) #11	RAB11A (ENSOANG00000038794) #12	MEGF11 (ENSOANG00000037204) #13	DIS3L (ENSOANG00000009753) #14	TIPIN (ENSOANG00000048848) #15	MAP2K1 (ENSOANG00000009750) #16	SNAPC5 (ENSOANG00000039654) #17	RPL4 (ENSOANG00000048650) #18	ZWILCH (ENSOANG00000004555) #19	LCTL (ENSOANG00000004554) #20	SMAD6 (ENSOANG00000042174) #21	SMAD3 (ENSOANG00000037003) #22	AAGAB (ENSOANG00000046695) #23	ENSOANG00000013556 #25	C15orf61 (ENSOANG00000042403) #26	MAP2K5 (ENSOANG00000013555) #27	SKOR1 (ENSOANG00000041839) #28	PIAS1 (ENSOANG00000013547) #29	CALML4 (ENSOANG00000036767) #30	CLN6 (ENSOANG00000044196) #31	ENSOANG00000013544	ITGA11 (ENSOANG00000013543) #34	CORO2B (ENSOANG00000013538) #35	ENSOANG00000048109 #36	ENSOANG00000013537 #37	NOX5 (ENSOANG00000012494)	GLCE (ENSOANG00000040386)
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
tuatara	DUPLICATION
tuatara	MODERN SPECIES	842		ENSSPUG00000013730 #11	ENSSPUG00000013724 #11	ENSSPUG00000013716 #11	ENSSPUG00000013706 #11	RAB11A (ENSSPUG00000013698) #12	MEGF11 (ENSSPUG00000013679) #13	DIS3L (ENSSPUG00000013652) #14	TIPIN (ENSSPUG00000013622) #15	MAP2K1 (ENSSPUG00000013607) #16	SNAPC5 (ENSSPUG00000013599) #17	RPL4 (ENSSPUG00000013570) #18	ENSSPUG00000013505 #19	LCTL (ENSSPUG00000013481) #20	SMAD6 (ENSSPUG00000013465) #21	SMAD3 (ENSSPUG00000013429) #22	AAGAB (ENSSPUG00000013388) #23	C15orf61 (ENSSPUG00000013351) #26	MAP2K5 (ENSSPUG00000013303) #27	PIAS1 (ENSSPUG00000013205) #29	CALML4 (ENSSPUG00000013190) #30	CLN6 (ENSSPUG00000013176) #31	ENSSPUG00000013166	ITGA11 (ENSSPUG00000013143) #34	CORO2B (ENSSPUG00000013122) #35	ENSSPUG00000013106 #36	NOX5 (ENSSPUG00000013079)	GLCE (ENSSPUG00000013062)	PAQR5 (ENSSPUG00000013045)	KIF23 (ENSSPUG00000012998)
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	662											SNRNP40 (ENSSPUG00000006897)	ZCCHC17 (ENSSPUG00000006912)	FABP3 (ENSSPUG00000006916)	ENSSPUG00000006942	SERINC2 (ENSSPUG00000006953)	ENSSPUG00000006973 #22
tuatara	MODERN SPECIES	1796	CTXND1 (ENSSPUG00000012478)	FAH (ENSSPUG00000012464)	ZFAND6 (ENSSPUG00000012449)	BCL2A1 (ENSSPUG00000012440)	MTHFS (ENSSPUG00000012416)	MINAR1 (ENSSPUG00000012401)	PEX11A (ENSSPUG00000012387)	ENSSPUG00000012381	ENSSPUG00000012366	ENSSPUG00000012309	ENSSPUG00000012264	RHCG (ENSSPUG00000012244)	POLG (ENSSPUG00000012224)	FANCI (ENSSPUG00000012182)	RLBP1 (ENSSPUG00000012149)	ENSSPUG00000012138 #22	ABHD2 (ENSSPUG00000012128)	MFGE8 (ENSSPUG00000012114)	HAPLN3 (ENSSPUG00000012102)	ACAN (ENSSPUG00000012070)	ISG20 (ENSSPUG00000012061)	ENSSPUG00000012053	ENSSPUG00000012045	ENSSPUG00000012030	MRPS11 (ENSSPUG00000012009)	ENSSPUG00000012000	ENSSPUG00000011993	NTRK3 (ENSSPUG00000011968)	AGBL1 (ENSSPUG00000011923)	KLHL25 (ENSSPUG00000011909)	ENSSPUG00000011799
tuatara	MODERN SPECIES	469															CREBBP (ENSSPUG00000016747)	ENSSPUG00000016737 #22	TRAP1 (ENSSPUG00000016721)	ENSSPUG00000016711	ENSSPUG00000016690
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Laterata	ANCESTRAL SPECIES	16	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000014144	HACD3 (ENSPMRG00000014152) #8	INTS14 (ENSPMRG00000014159) #9	DENND4A (ENSPMRG00000014169) #11	RAB11A (ENSPMRG00000014183) #12	MEGF11 (ENSPMRG00000014263) #13	ENSPMRG00000014534	ENSPMRG00000014537	DIS3L (ENSPMRG00000014540) #14	TIPIN (ENSPMRG00000014546) #15	MAP2K1 (ENSPMRG00000014555) #16	SNAPC5 (ENSPMRG00000014563) #17	RPL4 (ENSPMRG00000014570) #18	ZWILCH (ENSPMRG00000014603) #19	SMAD6 (ENSPMRG00000014612) #21	ENSPMRG00000014621 #22	AAGAB (ENSPMRG00000014629) #23	IQCH (ENSPMRG00000014635) #25	C15orf61 (ENSPMRG00000014653) #26	MAP2K5 (ENSPMRG00000014661) #27	SKOR1 (ENSPMRG00000014676) #28	PIAS1 (ENSPMRG00000014688) #29	CALML4 (ENSPMRG00000014698) #30	CLN6 (ENSPMRG00000014706) #31	ENSPMRG00000014712	ENSPMRG00000014717	ITGA11 (ENSPMRG00000014723) #34	CORO2B (ENSPMRG00000014736) #35	ENSPMRG00000014760 #36	NOX5 (ENSPMRG00000014775)	ALAD (ENSPMRG00000014792)
Common wall lizard	MODERN SPECIES	419	PCDH19 (ENSPMRG00000019237)	ENSPMRG00000019243	ENSPMRG00000019247	ENSPMRG00000019251	DIAPH2 (ENSPMRG00000019275)	ENSPMRG00000019335	ENSPMRG00000019341	ENSPMRG00000019352	ENSPMRG00000019359	KLHL4 (ENSPMRG00000019362)	STAG2 (ENSPMRG00000019375)	XIAP (ENSPMRG00000019403)	ENSPMRG00000019431	ENSPMRG00000019473	GRIA3 (ENSPMRG00000019489)	ENSPMRG00000019531 #22	ENSPMRG00000019537	ENSPMRG00000019540	ENSPMRG00000019543	ENSPMRG00000019550	CUL4B (ENSPMRG00000019560)	LAMP2 (ENSPMRG00000019585)	ENSPMRG00000019602	ATP1B4 (ENSPMRG00000019610)	ENSPMRG00000019622	ZBTB33 (ENSPMRG00000019633)	ENSPMRG00000019638	AKAP14 (ENSPMRG00000019648)	ENSPMRG00000019655	UPF3B (ENSPMRG00000019662)	ENSPMRG00000019674
Argentine black and white tegu	MODERN SPECIES	46	IGDCC3 (ENSSMRG00000021594)	IGDCC4 (ENSSMRG00000021593)	DPP8 (ENSSMRG00000021592) #7	HACD3 (ENSSMRG00000021591) #8	INTS14 (ENSSMRG00000021590) #9	DENND4A (ENSSMRG00000021589) #11	RAB11A (ENSSMRG00000021588) #12	MEGF11 (ENSSMRG00000021585) #13	DIS3L (ENSSMRG00000021584) #14	TIPIN (ENSSMRG00000021582) #15	MAP2K1 (ENSSMRG00000021581) #16	SNAPC5 (ENSSMRG00000021580) #17	RPL4 (ENSSMRG00000021574) #18	ZWILCH (ENSSMRG00000021573) #19	SMAD6 (ENSSMRG00000021572) #21	SMAD3 (ENSSMRG00000021571) #22	AAGAB (ENSSMRG00000021570) #23	IQCH (ENSSMRG00000021569) #25	C15orf61 (ENSSMRG00000021568) #26	MAP2K5 (ENSSMRG00000021567) #27	SKOR1 (ENSSMRG00000021566) #28	PIAS1 (ENSSMRG00000021565) #29	CALML4 (ENSSMRG00000021564) #30	CLN6 (ENSSMRG00000021563) #31	ENSSMRG00000021562	ITGA11 (ENSSMRG00000021561) #34	CORO2B (ENSSMRG00000021560) #35	ENSSMRG00000021559 #36	NOX5 (ENSSMRG00000021557)	GLCE (ENSSMRG00000021556)	PAQR5 (ENSSMRG00000021554)
Toxicofera	ANCESTRAL SPECIES	40	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Lizard	MODERN SPECIES	1079											ENSACAG00000005016	ENSACAG00000004994	RPL4 (ENSACAG00000009759) #18	ZWILCH (ENSACAG00000009844) #19	SMAD6 (ENSACAG00000009899) #21	SMAD3 (ENSACAG00000009914) #22	AAGAB (ENSACAG00000010006) #23	IQCH (ENSACAG00000010052) #25	C15orf61 (ENSACAG00000038258) #26	MAP2K5 (ENSACAG00000010072) #27	PIAS1 (ENSACAG00000010183) #29	CALML4 (ENSACAG00000010259) #30	CLN6 (ENSACAG00000010272) #31	FEM1B (ENSACAG00000001361) #33
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b.d #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Indian cobra	MODERN SPECIES	14	IGF1R (ENSNNAG00000004949)	SYNM (ENSNNAG00000007433)	DPP8 (ENSNNAG00000007591) #7	HACD3 (ENSNNAG00000009979) #8	INTS14 (ENSNNAG00000010021) #9	DENND4A (ENSNNAG00000010330) #11	RAB11A (ENSNNAG00000010435) #12	MEGF11 (ENSNNAG00000010468) #13	DIS3L (ENSNNAG00000010799) #14	TIPIN (ENSNNAG00000010924) #15	MAP2K1 (ENSNNAG00000010963) #16	SNAPC5 (ENSNNAG00000011012) #17	RPL4 (ENSNNAG00000011026) #18	ZWILCH (ENSNNAG00000011099) #19	SMAD6 (ENSNNAG00000011230) #21	SMAD3 (ENSNNAG00000011272) #22	AAGAB (ENSNNAG00000011287) #23	ENSNNAG00000011356	IQCH (ENSNNAG00000011412) #25	C15orf61 (ENSNNAG00000011603) #26	MAP2K5 (ENSNNAG00000011631) #27	SKOR1 (ENSNNAG00000011796) #28	PIAS1 (ENSNNAG00000012101) #29	CLN6 (ENSNNAG00000012206) #31	ENSNNAG00000012296	ITGA11 (ENSNNAG00000012334) #34	CORO2B (ENSNNAG00000012805) #35	ENSNNAG00000012830 #36	NOX5 (ENSNNAG00000012871)	GLCE (ENSNNAG00000012927)	ADAMTS7 (ENSNNAG00000012990)
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B.m #11	ENSGT00940000155836.B.n #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b.d #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000159819	ENSGT00390000017697.a
Blue-lipped sea krait	MODERN SPECIES	7285																SMAD3 (ENSLLTG00000004545) #22
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00940000160523	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B.m #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b.d #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000159819	ENSGT00390000016791
Eastern brown snake	MODERN SPECIES	43	ARRDC4 (ENSPTXG00000015586)	IGF1R (ENSPTXG00000015585)	SYNM (ENSPTXG00000015583)	DPP8 (ENSPTXG00000015569) #7	HACD3 (ENSPTXG00000015568) #8	INTS14 (ENSPTXG00000015567) #9	DENND4A (ENSPTXG00000015565) #11	RAB11A (ENSPTXG00000015564) #12	MEGF11 (ENSPTXG00000015560) #13	DIS3L (ENSPTXG00000015557) #14	TIPIN (ENSPTXG00000015555) #15	MAP2K1 (ENSPTXG00000015554) #16	SNAPC5 (ENSPTXG00000015552) #17	RPL4 (ENSPTXG00000015545) #18	SMAD6 (ENSPTXG00000015543) #21	SMAD3 (ENSPTXG00000015540) #22	AAGAB (ENSPTXG00000015539) #23	IQCH (ENSPTXG00000015536) #25	C15orf61 (ENSPTXG00000015534) #26	MAP2K5 (ENSPTXG00000015531) #27	ENSPTXG00000015529	PIAS1 (ENSPTXG00000015528) #29	CALML4 (ENSPTXG00000015527) #30	CLN6 (ENSPTXG00000015526) #31	ENSPTXG00000015525	ITGA11 (ENSPTXG00000015524) #34	CORO2B (ENSPTXG00000015523) #35	ENSPTXG00000015522 #36	NOX5 (ENSPTXG00000015521)	GLCE (ENSPTXG00000015519)	ADAMTS7 (ENSPTXG00000015512)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	49	ARRDC4 (ENSNSUG00000002927)	IGF1R (ENSNSUG00000002935)	SYNM (ENSNSUG00000002939)	DPP8 (ENSNSUG00000002945) #7	HACD3 (ENSNSUG00000003778) #8	INTS14 (ENSNSUG00000003780) #9	ENSNSUG00000003906 #11	RAB11A (ENSNSUG00000003908) #12	MEGF11 (ENSNSUG00000003910) #13	ENSNSUG00000003922 #14	TIPIN (ENSNSUG00000003924) #15	MAP2K1 (ENSNSUG00000003931) #16	SNAPC5 (ENSNSUG00000003966) #17	ENSNSUG00000003967 #18	ZWILCH (ENSNSUG00000003975) #19	SMAD3 (ENSNSUG00000003978) #22	AAGAB (ENSNSUG00000003997) #23	C15orf61 (ENSNSUG00000004019) #26	MAP2K5 (ENSNSUG00000004022) #27
Mainland tiger snake	MODERN SPECIES	15	ELAC1 (ENSNSUG00000013099)	ME2 (ENSNSUG00000013096)	MAPK4 (ENSNSUG00000013095)	ENSNSUG00000013094	ENSNSUG00000013093	ENSNSUG00000013092	ENSNSUG00000013091	ENSNSUG00000013090	ACAA2 (ENSNSUG00000013087)	LIPG (ENSNSUG00000012949)	ENSNSUG00000012945	C18orf32 (ENSNSUG00000012944)	DYM (ENSNSUG00000012943)	SMAD7 (ENSNSUG00000012942)	CTIF (ENSNSUG00000012893)	ENSNSUG00000012891 #22
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00960000193170	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043
Goode s thornscrub tortoise	MODERN SPECIES	1	HACD3 (ENSGEVG00005006129) #8	INTS14 (ENSGEVG00005006084) #9	SLC24A1 (ENSGEVG00005006015) #10	DENND4A (ENSGEVG00005005910) #11	RAB11A (ENSGEVG00005005859) #12	ENSGEVG00005005833	MEGF11 (ENSGEVG00005005633) #13	DIS3L (ENSGEVG00005005574) #14	TIPIN (ENSGEVG00005005547) #15	MAP2K1 (ENSGEVG00005005509) #16	SNAPC5 (ENSGEVG00005005478) #17	RPL4 (ENSGEVG00005005421) #18	ZWILCH (ENSGEVG00005005317) #19	LCTL (ENSGEVG00005005207) #20	SMAD6 (ENSGEVG00005005184) #21	SMAD3 (ENSGEVG00005005160) #22	AAGAB (ENSGEVG00005005135) #23	ENSGEVG00005005107	IQCH (ENSGEVG00005005068) #25	C15orf61 (ENSGEVG00005005051) #26	MAP2K5 (ENSGEVG00005004903) #27	SKOR1 (ENSGEVG00005004798) #28	PIAS1 (ENSGEVG00005004663) #29	CALML4 (ENSGEVG00005004576) #30	CLN6 (ENSGEVG00005004545) #31	FEM1B (ENSGEVG00005004527) #33	ITGA11 (ENSGEVG00005004365) #34	CORO2B (ENSGEVG00005004248) #35	ENSGEVG00005004193 #36	NOX5 (ENSGEVG00005004166)	GLCE (ENSGEVG00005004077)
Abingdon island giant tortoise	MODERN SPECIES	2468						ATXN1 (ENSCABG00000005586)	ENSCABG00000005592	RBM24 (ENSCABG00000005598)	CAP2 (ENSCABG00000005601)	FAM8A1 (ENSCABG00000005603)	NUP153 (ENSCABG00000005639)	ENSCABG00000006965	PAK1IP1 (ENSCABG00000006969)	TMEM14C (ENSCABG00000006974)	ENSCABG00000006977	SMAD3 (ENSCABG00000006979) #22	AAGAB (ENSCABG00000006983) #23	IQCH (ENSCABG00000006989) #25	C15orf61 (ENSCABG00000007006) #26	MAP2K5 (ENSCABG00000007008) #27	SKOR1 (ENSCABG00000007009) #28	PIAS1 (ENSCABG00000007017) #29	CALML4 (ENSCABG00000007026) #30	CLN6 (ENSCABG00000007043) #31	FEM1B (ENSCABG00000007048) #33	ITGA11 (ENSCABG00000007055) #34	CORO2B (ENSCABG00000007062) #35	ENSCABG00000007077 #36	NOX5 (ENSCABG00000007079)	GLCE (ENSCABG00000007080)	ENSCABG00000007082
Emydidae	ANCESTRAL SPECIES	21	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.b #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
painted turtle	MODERN SPECIES	742															SMAD6 (ENSCPBG00000025564) #21	SMAD3 (ENSCPBG00000025562) #22	AAGAB (ENSCPBG00000025560) #23	IQCH (ENSCPBG00000025554) #25	C15orf61 (ENSCPBG00000025551) #26	MAP2K5 (ENSCPBG00000025545) #27	SKOR1 (ENSCPBG00000025542) #28	PIAS1 (ENSCPBG00000025540) #29	CALML4 (ENSCPBG00000025539) #30	CLN6 (ENSCPBG00000025538) #31	FEM1B (ENSCPBG00000025536) #33	ITGA11 (ENSCPBG00000025526) #34	CORO2B (ENSCPBG00000025523) #35	ENSCPBG00000025519 #36	NOX5 (ENSCPBG00000025517)	GLCE (ENSCPBG00000025514)	PAQR5 (ENSCPBG00000025513)
Three-toed box turtle	MODERN SPECIES	27	DPP8 (ENSTMTG00000007513) #7	HACD3 (ENSTMTG00000007567) #8	INTS14 (ENSTMTG00000007590) #9	SLC24A1 (ENSTMTG00000007638) #10	DENND4A (ENSTMTG00000007680) #11	RAB11A (ENSTMTG00000007735) #12	MEGF11 (ENSTMTG00000007756) #13	DIS3L (ENSTMTG00000007906) #14	ENSTMTG00000007940 #15	MAP2K1 (ENSTMTG00000007966) #16	ENSTMTG00000007987	ENSTMTG00000008003 #18	ZWILCH (ENSTMTG00000008057) #19	LCTL (ENSTMTG00000008371) #20	SMAD6 (ENSTMTG00000008403) #21	SMAD3 (ENSTMTG00000008413) #22	AAGAB (ENSTMTG00000008426) #23	IQCH (ENSTMTG00000008467) #25	ENSTMTG00000008700 #26	MAP2K5 (ENSTMTG00000008725) #27	SKOR1 (ENSTMTG00000008807) #28	PIAS1 (ENSTMTG00000008856) #29	CALML4 (ENSTMTG00000008891) #30	CLN6 (ENSTMTG00000008908) #31	FEM1B (ENSTMTG00000008924) #33	ITGA11 (ENSTMTG00000008937) #34	ENSTMTG00000009016 #35	ENSTMTG00000009040 #36	NOX5 (ENSTMTG00000009057)	GLCE (ENSTMTG00000009094)	PAQR5 (ENSTMTG00000009106)
Chinese turtle	MODERN SPECIES	1779																SMAD3 (ENSPSIG00000010579) #22	AAGAB (ENSPSIG00000011201) #23	IQCH (ENSPSIG00000011323) #25	MAP2K5 (ENSPSIG00000011712) #27	PIAS1 (ENSPSIG00000012489) #29	CALML4 (ENSPSIG00000012516) #30	CLN6 (ENSPSIG00000012575) #31	FEM1B (ENSPSIG00000012891) #33	ITGA11 (ENSPSIG00000012913) #34	CORO2B (ENSPSIG00000014178) #35	ENSPSIG00000014700 #36	NOX5 (ENSPSIG00000014865)	GLCE (ENSPSIG00000015287)	PAQR5 (ENSPSIG00000015595)	KIF23 (ENSPSIG00000015679)	ENSPSIG00000016179
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Australian saltwater crocodile	MODERN SPECIES	31	HACD3 (ENSCPRG00005000454) #8	INTS14 (ENSCPRG00005000472) #9	ENSCPRG00005000476 #10	ENSCPRG00005000484 #10	DENND4A (ENSCPRG00005000499) #11	RAB11A (ENSCPRG00005000532) #12	MEGF11 (ENSCPRG00005000552) #13	DIS3L (ENSCPRG00005000594) #14	TIPIN (ENSCPRG00005000607) #15	MAP2K1 (ENSCPRG00005000623) #16	SNAPC5 (ENSCPRG00005000626) #17	RPL4 (ENSCPRG00005000630) #18	ZWILCH (ENSCPRG00005000651) #19	LCTL (ENSCPRG00005000669) #20	SMAD6 (ENSCPRG00005000698) #21	SMAD3 (ENSCPRG00005000730) #22	AAGAB (ENSCPRG00005000756) #23	IQCH (ENSCPRG00005000770) #25	C15orf61 (ENSCPRG00005000791) #26	MAP2K5 (ENSCPRG00005000813) #27	PIAS1 (ENSCPRG00005000826) #29	CALML4 (ENSCPRG00005000835) #30	CLN6 (ENSCPRG00005000877) #31	ENSCPRG00005000881	ITGA11 (ENSCPRG00005000885) #34	CORO2B (ENSCPRG00005000933) #35	ENSCPRG00005000951 #36	ENSCPRG00005000961	NOX5 (ENSCPRG00005000970)	ENSCPRG00005000980	GLCE (ENSCPRG00005000985)
Aves	ANCESTRAL SPECIES	14	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
African ostrich	MODERN SPECIES	336												MAP2K1 (ENSSCUG00000002980) #16	ENSSCUG00000002979	RPL4 (ENSSCUG00000002974) #18	ZWILCH (ENSSCUG00000002970) #19	SMAD3 (ENSSCUG00000002964) #22	ENSSCUG00000002962 #23	IQCH (ENSSCUG00000002961) #25	ENSSCUG00000002960	ENSSCUG00000002959	MAP2K5 (ENSSCUG00000002958) #27	PIAS1 (ENSSCUG00000002957) #29	CALML4 (ENSSCUG00000002956) #30	CLN6 (ENSSCUG00000002955) #31	ENSSCUG00000002954	ITGA11 (ENSSCUG00000002951) #34	ENSSCUG00000002948 #36	GLCE (ENSSCUG00000002945)	ENSSCUG00000002943	ENSSCUG00000002941	KIF23 (ENSSCUG00000002925)
Neognathae	ANCESTRAL SPECIES	11	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Chicken	MODERN SPECIES	1	IGDCC4 (ENSGALG00010017782)	DPP8 (ENSGALG00010017805) #7	HACD3 (ENSGALG00010017811) #8	VWA9 (ENSGALG00010017815) #9	SLC24A1 (ENSGALG00010017819) #10	DENND4A (ENSGALG00010017830) #11	RAB11A (ENSGALG00010017870) #12	MEGF11 (ENSGALG00010017904) #13	DIS3L (ENSGALG00010017941) #14	TIPIN (ENSGALG00010017956) #15	MAP2K1 (ENSGALG00010018000) #16	SNAPC5 (ENSGALG00010018020) #17	RPL4 (ENSGALG00010018036) #18	ZWILCH (ENSGALG00010018042) #19	SMAD6 (ENSGALG00010018054) #21	SMAD3 (ENSGALG00010018099) #22	AAGAB (ENSGALG00010018150) #23	IQCH (ENSGALG00010018192) #25	C15orf61 (ENSGALG00010016968) #26	MAP2K5 (ENSGALG00010017039) #27	SKOR1 (ENSGALG00010017146) #28	PIAS1 (ENSGALG00010017264) #29	CALML4 (ENSGALG00010017314) #30	CLN6 (ENSGALG00010017327) #31	FEM1B (ENSGALG00010017354) #33	ENSGALG00010017382	ITGA11 (ENSGALG00010017403) #34	CORO2B (ENSGALG00010017482) #35	ANP32A (ENSGALG00010017558) #36	NOX5 (ENSGALG00010017588)	GLCE (ENSGALG00010016452)
Turkey	MODERN SPECIES	3	IGDCC4 (ENSMGAG00000009630)	DPP8 (ENSMGAG00000009649) #7	HACD3 (ENSMGAG00000009683) #8	INTS14 (ENSMGAG00000009693) #9	SLC24A1 (ENSMGAG00000009715) #10	DENND4A (ENSMGAG00000009728) #11	RAB11A (ENSMGAG00000009797) #12	MEGF11 (ENSMGAG00000009776) #13	DIS3L (ENSMGAG00000009805) #14	TIPIN (ENSMGAG00000009857) #15	MAP2K1 (ENSMGAG00000009864) #16	ENSMGAG00000019153	RPL4 (ENSMGAG00000009822) #18	ZWILCH (ENSMGAG00000009851) #19	SMAD6 (ENSMGAG00000009875) #21	SMAD3 (ENSMGAG00000009879) #22	AAGAB (ENSMGAG00000009906) #23	IQCH (ENSMGAG00000009928) #25	C15orf61 (ENSMGAG00000022676) #26	MAP2K5 (ENSMGAG00000009937) #27	PIAS1 (ENSMGAG00000009994) #29	CALML4 (ENSMGAG00000010048) #30	CLN6 (ENSMGAG00000010054) #31	ENSMGAG00000010069	ITGA11 (ENSMGAG00000010073) #34	CORO2B (ENSMGAG00000010149) #35	ENSMGAG00000010171 #36	NOX5 (ENSMGAG00000010183)	GLCE (ENSMGAG00000010210)	PAQR5 (ENSMGAG00000010133)	KIF23 (ENSMGAG00000010217)
Japanese quail	MODERN SPECIES	1	IGDCC4 (ENSCJPG00005020763)	DPP8 (ENSCJPG00005020764) #7	HACD3 (ENSCJPG00005020802) #8	INTS14 (ENSCJPG00005020803) #9	SLC24A1 (ENSCJPG00005020804) #10	DENND4A (ENSCJPG00005020807) #11	RAB11A (ENSCJPG00005020908) #12	MEGF11 (ENSCJPG00005020910) #13	DIS3L (ENSCJPG00005020941) #14	TIPIN (ENSCJPG00005020942) #15	MAP2K1 (ENSCJPG00005020944) #16	SNAPC5 (ENSCJPG00005020958) #17	RPL4 (ENSCJPG00005020961) #18	ZWILCH (ENSCJPG00005020968) #19	SMAD6 (ENSCJPG00005020969) #21	SMAD3 (ENSCJPG00005020970) #22	AAGAB (ENSCJPG00005020971) #23	IQCH (ENSCJPG00005020972) #25	C15orf61 (ENSCJPG00005020973) #26	MAP2K5 (ENSCJPG00005020975) #27	SKOR1 (ENSCJPG00005020991) #28	PIAS1 (ENSCJPG00005020993) #29	CALML4 (ENSCJPG00005020995) #30	CLN6 (ENSCJPG00005020996) #31	FEM1B (ENSCJPG00005020997) #33	ITGA11 (ENSCJPG00005020998) #34	CORO2B (ENSCJPG00005020999) #35	ENSCJPG00005021000 #36	GLCE (ENSCJPG00005021002)	PAQR5 (ENSCJPG00005021003)	KIF23 (ENSCJPG00005021004)
Anatidae	ANCESTRAL SPECIES	36	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689.c #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844	ENSGT00940000155837
Duck	MODERN SPECIES	2	DPP8 (ENSAPLG00000013345) #7	HACD3 (ENSAPLG00000013863) #8	INTS14 (ENSAPLG00000014064) #9	SLC24A1 (ENSAPLG00000014168) #10	DENND4A (ENSAPLG00000014243) #11	RAB11A (ENSAPLG00000014962) #12	MEGF11 (ENSAPLG00000015095) #13	DIS3L (ENSAPLG00000015294) #14	TIPIN (ENSAPLG00000015332) #15	MAP2K1 (ENSAPLG00000015480) #16	SNAPC5 (ENSAPLG00000001863) #17	RPL4 (ENSAPLG00000015853) #18	ZWILCH (ENSAPLG00000000968) #19	ENSAPLG00000028241 #20	SMAD6 (ENSAPLG00000000997) #21	SMAD3 (ENSAPLG00000007006) #22	AAGAB (ENSAPLG00000007346) #23	IQCH (ENSAPLG00000007592) #25	C15orf61 (ENSAPLG00000001076) #26	MAP2K5 (ENSAPLG00000007755) #27	ENSAPLG00000002495 #29	CALML4 (ENSAPLG00000003092) #30	CLN6 (ENSAPLG00000003181) #31	FEM1B (ENSAPLG00000003592) #33	ITGA11 (ENSAPLG00000003663) #34	ENSAPLG00000029500 #35	CORO2B (ENSAPLG00000027282) #35	ENSAPLG00000016831 #36	NOX5 (ENSAPLG00000005589)	GLCE (ENSAPLG00000005999)	ENSAPLG00000018841
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	52	HACD3 (ENSABRG00000008901) #8	INTS14 (ENSABRG00000008861) #9	SLC24A1 (ENSABRG00000008827) #10	DENND4A (ENSABRG00000008768) #11	RAB11A (ENSABRG00000008748) #12	MEGF11 (ENSABRG00000008723) #13	DIS3L (ENSABRG00000008682) #14	TIPIN (ENSABRG00000008669) #15	ENSABRG00000008668	MAP2K1 (ENSABRG00000008635) #16	SNAPC5 (ENSABRG00000008617) #17	RPL4 (ENSABRG00000008586) #18	ZWILCH (ENSABRG00000008567) #19	LCTL (ENSABRG00000008534) #20	SMAD6 (ENSABRG00000008516) #21	SMAD3 (ENSABRG00000008486) #22	AAGAB (ENSABRG00000008468) #23	IQCH (ENSABRG00000008459) #25	C15orf61 (ENSABRG00000008455) #26	MAP2K5 (ENSABRG00000008420) #27	PIAS1 (ENSABRG00000008359) #29	CALML4 (ENSABRG00000008336) #30	CLN6 (ENSABRG00000008307) #31	ENSABRG00000008298	ITGA11 (ENSABRG00000007970) #34	CORO2B (ENSABRG00000007931) #35	ENSABRG00000007925 #36	ENSABRG00000007920	NOX5 (ENSABRG00000007909)	GLCE (ENSABRG00000007906)	PAQR5 (ENSABRG00000007901)
Pink-footed goose	MODERN SPECIES	326															ZBTB7C (ENSABRG00000011627)	ENSABRG00000011637 #22	SMAD2 (ENSABRG00000011646) ##22	IER3IP1 (ENSABRG00000011660)	HDHD2 (ENSABRG00000011673)
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Great tit	MODERN SPECIES	1	DPP8 (ENSPMJG00000009912) #7	HACD3 (ENSPMJG00000009915) #8	INTS14 (ENSPMJG00000009916) #9	SLC24A1 (ENSPMJG00000009917) #10	DENND4A (ENSPMJG00000009918) #11	RAB11A (ENSPMJG00000009921) #12	MEGF11 (ENSPMJG00000009924) #13	DIS3L (ENSPMJG00000009931) #14	TIPIN (ENSPMJG00000009939) #15	MAP2K1 (ENSPMJG00000009964) #16	SNAPC5 (ENSPMJG00000009967) #17	RPL4 (ENSPMJG00000009971) #18	ZWILCH (ENSPMJG00000009977) #19	LCTL (ENSPMJG00000009979) #20	SMAD6 (ENSPMJG00000009983) #21	SMAD3 (ENSPMJG00000009991) #22	AAGAB (ENSPMJG00000009992) #23	IQCH (ENSPMJG00000009995) #25	C15orf61 (ENSPMJG00000009998) #26	MAP2K5 (ENSPMJG00000010012) #27	PIAS1 (ENSPMJG00000010016) #29	ENSPMJG00000010020 #30	FEM1B (ENSPMJG00000010022) #33	ITGA11 (ENSPMJG00000010024) #34	ENSPMJG00000010045 #35	ENSPMJG00000010057 #35	ENSPMJG00000010061 #36	NOX5 (ENSPMJG00000010066)	GLCE (ENSPMJG00000010071)	KIF23 (ENSPMJG00000010072)	TLE3 (ENSPMJG00000010074)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Flycatcher	MODERN SPECIES	1	FOXB1 (ENSFALG00000012555)	ANXA2 (ENSFALG00000028021)	ICE2 (ENSFALG00000012586)	ENSFALG00000026543	RORA (ENSFALG00000012589)	VPS13C (ENSFALG00000012641)	ENSFALG00000012743	TLN2 (ENSFALG00000012750)	TPM1 (ENSFALG00000026833)	LACTB (ENSFALG00000012785)	RPL4 (ENSFALG00000024664) #18	ZWILCH (ENSFALG00000012802) #19	LCTL (ENSFALG00000012819) #20	ENSFALG00000023761	SMAD6 (ENSFALG00000012842) #21	SMAD3 (ENSFALG00000028582) #22	AAGAB (ENSFALG00000028875) #23	IQCH (ENSFALG00000012896) #25	ENSFALG00000012905	MAP2K5 (ENSFALG00000028460) #27	PIAS1 (ENSFALG00000010137) #29	ENSFALG00000028365	CALML4 (ENSFALG00000010143) #30	CLN6 (ENSFALG00000023153) #31	FEM1B (ENSFALG00000010149) #33	ITGA11 (ENSFALG00000010154) #34	CORO2B (ENSFALG00000010159) #35	ENSFALG00000026588 #36	NOX5 (ENSFALG00000026351)	ENSFALG00000010185	PAQR5 (ENSFALG00000024286)
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT01060000252718	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240.oc #31	ENSGT00940000164138	ENSGT00400000022240.nc #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591
Medium ground finch	MODERN SPECIES	69	DPP8 (ENSGFOG00000010227) #7	HACD3 (ENSGFOG00000010246) #8	INTS14 (ENSGFOG00000010255) #9	SLC24A1 (ENSGFOG00000010269) #10	DENND4A (ENSGFOG00000010346) #11	RAB11A (ENSGFOG00000011557) #12	MEGF11 (ENSGFOG00000011585) #13	DIS3L (ENSGFOG00000011782) #14	TIPIN (ENSGFOG00000011794) #15	MAP2K1 (ENSGFOG00000011801) #16	ENSGFOG00000011806	RPL4 (ENSGFOG00000011811) #18	ZWILCH (ENSGFOG00000011836) #19	LCTL (ENSGFOG00000011846) #20	SMAD6 (ENSGFOG00000011856) #21	SMAD3 (ENSGFOG00000011865) #22	ENSGFOG00000011872 #23	ENSGFOG00000011876 #23	IQCH (ENSGFOG00000011884) #25	ENSGFOG00000011897 #26	MAP2K5 (ENSGFOG00000011911) #27	PIAS1 (ENSGFOG00000011939) #29	CALML4 (ENSGFOG00000011946) #30	CLN6 (ENSGFOG00000011952) #31	ENSGFOG00000011958	ITGA11 (ENSGFOG00000011965) #34	CORO2B (ENSGFOG00000011982) #35	ENSGFOG00000011990 #36	NOX5 (ENSGFOG00000011998)	GLCE (ENSGFOG00000012008)	ENSGFOG00000012011
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT01060000252718	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00960000188521	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240.nc #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043.e	ENSGT00990000212087
Common canary	MODERN SPECIES	12	INTS14 (ENSSCAG00000010200) #9	SLC24A1 (ENSSCAG00000010206) #10	DENND4A (ENSSCAG00000010214) #11	RAB11A (ENSSCAG00000010226) #12	MEGF11 (ENSSCAG00000010255) #13	DIS3L (ENSSCAG00000010324) #14	TIPIN (ENSSCAG00000010328) #15	MAP2K1 (ENSSCAG00000010333) #16	ENSSCAG00000010341	RPL4 (ENSSCAG00000010344) #18	ZWILCH (ENSSCAG00000010364) #19	LCTL (ENSSCAG00000010374) #20	ENSSCAG00000010394	ENSSCAG00000010404	SMAD6 (ENSSCAG00000010407) #21	SMAD3 (ENSSCAG00000010414) #22	AAGAB (ENSSCAG00000010418) #23	IQCH (ENSSCAG00000010432) #25	ENSSCAG00000010438	MAP2K5 (ENSSCAG00000010448) #27	PIAS1 (ENSSCAG00000010481) #29	CALML4 (ENSSCAG00000010490) #30	ENSSCAG00000010493 #31	ENSSCAG00000010498 #31	ENSSCAG00000010505	ITGA11 (ENSSCAG00000010528) #34	CORO2B (ENSSCAG00000010620) #35	ENSSCAG00000010637 #36	NOX5 (ENSSCAG00000010650)	GLCE (ENSSCAG00000010658)	ENSSCAG00000010664
Zebra finch	MODERN SPECIES	1	DPP8 (ENSTGUG00000009145) #7	HACD3 (ENSTGUG00000009174) #8	INTS14 (ENSTGUG00000009182) #9	SLC24A1 (ENSTGUG00000009206) #10	DENND4A (ENSTGUG00000009220) #11	RAB11A (ENSTGUG00000009279) #12	MEGF11 (ENSTGUG00000009293) #13	DIS3L (ENSTGUG00000009315) #14	TIPIN (ENSTGUG00000009358) #15	ENSTGUG00000019914	MAP2K1 (ENSTGUG00000009363) #16	RPL4 (ENSTGUG00000009403) #18	ZWILCH (ENSTGUG00000009439) #19	LCTL (ENSTGUG00000009457) #20	SMAD6 (ENSTGUG00000009467) #21	SMAD3 (ENSTGUG00000009470) #22	AAGAB (ENSTGUG00000009497) #23	IQCH (ENSTGUG00000009504) #25	ENSTGUG00000009527	MAP2K5 (ENSTGUG00000009531) #27	ENSTGUG00000025021 #28	ENSTGUG00000009553 #29	ENSTGUG00000029271 #30	ENSTGUG00000021449 #31	ENSTGUG00000024498 #33	ENSTGUG00000009614 #34	ENSTGUG00000020847 #35	ANP32A (ENSTGUG00000009670) #36	ENSTGUG00000026437	ENSTGUG00000019518	ENSTGUG00000024602
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Kakapo	MODERN SPECIES	1	HACD3 (ENSSHBG00005009669) #8	INTS14 (ENSSHBG00005009649) #9	SLC24A1 (ENSSHBG00005009620) #10	DENND4A (ENSSHBG00005009346) #11	RAB11A (ENSSHBG00005009201) #12	ENSSHBG00005009181 #13	ENSSHBG00005009158 #13	DIS3L (ENSSHBG00005009084) #14	TIPIN (ENSSHBG00005009068) #15	MAP2K1 (ENSSHBG00005009053) #16	SNAPC5 (ENSSHBG00005009047) #17	RPL4 (ENSSHBG00005009017) #18	ZWILCH (ENSSHBG00005008951) #19	LCTL (ENSSHBG00005008922) #20	SMAD6 (ENSSHBG00005000779) #21	SMAD3 (ENSSHBG00005000770) #22	AAGAB (ENSSHBG00005000737) #23	IQCH (ENSSHBG00005000728) #25	C15orf61 (ENSSHBG00005000716) #26	MAP2K5 (ENSSHBG00005000699) #27	SKOR1 (ENSSHBG00005011833) #28	PIAS1 (ENSSHBG00005011813) #29	CALML4 (ENSSHBG00005011797) #30	CLN6 (ENSSHBG00005011786) #31	FEM1B (ENSSHBG00005011772) #33	ITGA11 (ENSSHBG00005011743) #34	CORO2B (ENSSHBG00005011717) #35	ENSSHBG00005011703 #36	NOX5 (ENSSHBG00005011668)	GLCE (ENSSHBG00005011650)	PAQR5 (ENSSHBG00005011637)
Golden eagle	MODERN SPECIES	21	DPP8 (ENSACCG00020009512) #7	HACD3 (ENSACCG00020009900) #8	INTS14 (ENSACCG00020009917) #9	SLC24A1 (ENSACCG00020009936) #10	DENND4A (ENSACCG00020009959) #11	RAB11A (ENSACCG00020009992) #12	MEGF11 (ENSACCG00020010081) #13	DIS3L (ENSACCG00020010156) #14	TIPIN (ENSACCG00020010172) #15	MAP2K1 (ENSACCG00020010187) #16	SNAPC5 (ENSACCG00020010201) #17	RPL4 (ENSACCG00020000310) #18	ZWILCH (ENSACCG00020000434) #19	LCTL (ENSACCG00020000480) #20	SMAD6 (ENSACCG00020000507) #21	SMAD3 (ENSACCG00020000522) #22	AAGAB (ENSACCG00020000560) #23	C15orf61 (ENSACCG00020000661) #26	MAP2K5 (ENSACCG00020000704) #27	SKOR1 (ENSACCG00020000753) #28	PIAS1 (ENSACCG00020000781) #29	CALML4 (ENSACCG00020000839) #30	CLN6 (ENSACCG00020000865) #31	FEM1B (ENSACCG00020000880) #33	ITGA11 (ENSACCG00020001060) #34	CORO2B (ENSACCG00020001194) #35	ENSACCG00020001229 #36	NOX5 (ENSACCG00020001264)	GLCE (ENSACCG00020001293)	PAQR5 (ENSACCG00020001307)	KIF23 (ENSACCG00020001359)
Anura	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Frog	MODERN SPECIES	3	dpp8 (ENSXETG00000006646) #7	hacd3 (ENSXETG00000030041) #8	ints14 (ENSXETG00000006644) #9	slc24a1 (ENSXETG00000033301) #10	dennd4a (ENSXETG00000006641) #11	rab11a (ENSXETG00000006639) #12	megf11 (ENSXETG00000015852) #13	dis3l (ENSXETG00000015865) #14	tipin (ENSXETG00000024752) #15	map2k1 (ENSXETG00000015887) #16	snapc5 (ENSXETG00000015893)	rpl4 (ENSXETG00000015898) #18	zwilch (ENSXETG00000015894) #19	lctl (ENSXETG00000015904) #20	smad6 (ENSXETG00000015939) #21	smad3 (ENSXETG00000007804) #22	aagab (ENSXETG00000007805) #23	pnlip (ENSXETG00000007807) #25	c15orf61 (ENSXETG00000030493) #26	map2k5 (ENSXETG00000007809) #27	ENSXETG00000044421	skor1 (ENSXETG00000007811) #28	pias1 (ENSXETG00000007813) #29	calml4 (ENSXETG00000007814) #30	cln6 (ENSXETG00000029932) #31	ENSXETG00000044370	fem1b (ENSXETG00000007817)	itga11 (ENSXETG00000007816) #34	coro2b (ENSXETG00000025308) #35	anp32a (ENSXETG00000007821) #36	nox5 (ENSXETG00000007819)
Leishan spiny toad	MODERN SPECIES	6	SLC24A1 (ENSLLEG00000006354) #10	DENND4A (ENSLLEG00000006505) #11	RAB11A (ENSLLEG00000007065) #12	MEGF11 (ENSLLEG00000007218) #13	ENSLLEG00000007739	DIS3L (ENSLLEG00000007758) #14	TIPIN (ENSLLEG00000007891) #15	ENSLLEG00000007941 #16	SNAPC5 (ENSLLEG00000008005) #17	ENSLLEG00000008024	ENSLLEG00000008052 #18	ZWILCH (ENSLLEG00000008260) #19	LCTL (ENSLLEG00000008419) #20	ENSLLEG00000009059	SMAD6 (ENSLLEG00000009090) #21	SMAD3 (ENSLLEG00000009194) #22	AAGAB (ENSLLEG00000009905) #23	IQCH (ENSLLEG00000009988) #25	C15orf61 (ENSLLEG00000010164) #26	MAP2K5 (ENSLLEG00000010224) #27	SKOR1 (ENSLLEG00000010653) #28	ENSLLEG00000010729	PIAS1 (ENSLLEG00000010874) #29	CALML4 (ENSLLEG00000011194) #30	CLN6 (ENSLLEG00000011246) #31	FEM1B (ENSLLEG00000011357) #33	ITGA11 (ENSLLEG00000011407) #34	ENSLLEG00000011591	CORO2B (ENSLLEG00000011668) #35	ENSLLEG00000012168 #36	NOX5 (ENSLLEG00000012326)
Coelacanth	MODERN SPECIES	951															SMAD6 (ENSLACG00000005364) #21	SMAD3 (ENSLACG00000010552) #22	AAGAB (ENSLACG00000011060) #23	IQCH (ENSLACG00000011619) #25	C15orf61 (ENSLACG00000012466) #26	MAP2K5 (ENSLACG00000012658) #27	SKOR1 (ENSLACG00000014295) #28
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Atlantic herring	MODERN SPECIES	3	ENSCHAG00000001603	rassf2b (ENSCHAG00000001666)	ENSCHAG00000001677	prnpb (ENSCHAG00000001684)	ENSCHAG00000001727	LETM2 (ENSCHAG00000001775)	NSD3 (ENSCHAG00000001902)	plpp5 (ENSCHAG00000004777)	ENSCHAG00000004798	ENSCHAG00000004813	ENSCHAG00000004851	ENSCHAG00000004864	ENSCHAG00000004877	loxl2a (ENSCHAG00000004948)	ENSCHAG00000005688	ENSCHAG00000005704 #22	sigmar1 (ENSCHAG00000005904)	katnal2 (ENSCHAG00000005941)	hdhd2 (ENSCHAG00000006516)	ier3ip1 (ENSCHAG00000006553)	skor2 (ENSCHAG00000006617)	galt (ENSCHAG00000006639)	ENSCHAG00000006824	cntfr (ENSCHAG00000006855)	ENSCHAG00000006865	tmem267 (ENSCHAG00000006879)	ENSCHAG00000006906	si:busm1-57f23.1 (ENSCHAG00000006917)	rassf6 (ENSCHAG00000006925)	MUSK (ENSCHAG00000006960)	lpar1 (ENSCHAG00000007399)
Euteleosteomorpha	ANCESTRAL SPECIES	27																ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Acanthomorphata	ANCESTRAL SPECIES	146																ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Euacanthomorphacea	ANCESTRAL SPECIES	83														ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Pinecone sodierfish	MODERN SPECIES	3	jak2a (ENSMMDG00005012944)	rln1 (ENSMMDG00005012844)	plgrkt (ENSMMDG00005012841)	ENSMMDG00005012839	ugt2a5 (ENSMMDG00005011562)	sigmar1 (ENSMMDG00005011537)	galt (ENSMMDG00005011526)	cntfr (ENSMMDG00005011460)	ENSMMDG00005011456	dusp4 (ENSMMDG00005011454)	ENSMMDG00005011450	ENSMMDG00005011286	ENSMMDG00005011276	ENSMMDG00005011274	ENSMMDG00005011271	ENSMMDG00005011213 #22	skor2 (ENSMMDG00005011206)	ier3ip1 (ENSMMDG00005011205)	hdhd2 (ENSMMDG00005011200)	ENSMMDG00005011197	ENSMMDG00005011194	ENSMMDG00005011192	ENSMMDG00005004770	stoml2 (ENSMMDG00005004408)	PIGO (ENSMMDG00005020695)	ccl19b (ENSMMDG00005020693)	PHF24 (ENSMMDG00005020689)	prkab1a (ENSMMDG00005020685)	PLA2G1B (ENSMMDG00005020565)	ENSMMDG00005020557	LRRTM4 (ENSMMDG00005020555)
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A
Tiger tail seahorse	MODERN SPECIES	230							ENSHCOG00000006969	inip (ENSHCOG00000006948)	snx30 (ENSHCOG00000000203)	SLC46A2 (ENSHCOG00000006923)	ENSHCOG00000006907	PLPPR1 (ENSHCOG00000006858)	ENSHCOG00000006807	ENSHCOG00000006774	ENSHCOG00000006731	ENSHCOG00000006720 #22	skor2 (ENSHCOG00000006668)	ier3ip1 (ENSHCOG00000006656)	hdhd2 (ENSHCOG00000006602)	katnal2 (ENSHCOG00000006556)	sigmar1 (ENSHCOG00000006291)	galt (ENSHCOG00000006268)	cntfr (ENSHCOG00000006229)	tmem267 (ENSHCOG00000006153)	ENSHCOG00000006144	si:busm1-57f23.1 (ENSHCOG00000006132)	rassf6 (ENSHCOG00000006128)	MUSK (ENSHCOG00000006098)
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00390000007731	ENSGT00940000165675
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000165675.m	ENSGT00390000007731
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT01100000263544.c.a.a.b	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000165675.m	ENSGT00390000007731
Mangrove rivulus	MODERN SPECIES	16	antxr2b (ENSKMAG00000014384)	rasgef1bb (ENSKMAG00000014414)	ENSKMAG00000014459	snx18b (ENSKMAG00000014496)	inip (ENSKMAG00000014510)	snx30 (ENSKMAG00000014529)	SLC46A2 (ENSKMAG00000014567)	ENSKMAG00000014630	PLPPR1 (ENSKMAG00000014724)	GRIN3A (ENSKMAG00000014752)	ENSKMAG00000014806	ENSKMAG00000014881	ENSKMAG00000014948	ENSKMAG00000014964	ENSKMAG00000014979	ENSKMAG00000014998 #22	skor2 (ENSKMAG00000015049)	ier3ip1 (ENSKMAG00000015069)	hdhd2 (ENSKMAG00000015086)	katnal2 (ENSKMAG00000015114)	sigmar1 (ENSKMAG00000015145)	galt (ENSKMAG00000015181)	cntfr (ENSKMAG00000015234)	tmem267 (ENSKMAG00000015254)	ENSKMAG00000015288	si:busm1-57f23.1 (ENSKMAG00000015342)	rassf6 (ENSKMAG00000015365)	MUSK (ENSKMAG00000015403)	lpar1 (ENSKMAG00000015458)	ENSKMAG00000015490	ENSKMAG00000015596
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015018683	PLA2G1B (ENSNFUG00015018689)	prkab1a (ENSNFUG00015018692)	PHF24 (ENSNFUG00015018695)	ENSNFUG00015018698	PIGO (ENSNFUG00015018703)	stoml2 (ENSNFUG00015018719)	ENSNFUG00015018738	ENSNFUG00015019102	ENSNFUG00015019316	ENSNFUG00015019318	ENSNFUG00015019320	ENSNFUG00015019323	ENSNFUG00015019327	ENSNFUG00015019331	Nfu_g_1_006304 (ENSNFUG00015019334) #22	skor2 (ENSNFUG00015019356)	ier3ip1 (ENSNFUG00015019361)	HDHD2 (ENSNFUG00015019363)	katnal2 (ENSNFUG00015019373)	SIGMAR1 (ENSNFUG00015019680)	ENSNFUG00015019687	ENSNFUG00015019690	ENSNFUG00015019697	ENSNFUG00015019699	cntfr (ENSNFUG00015019706)	rassf6 (ENSNFUG00015019738)	MUSK (ENSNFUG00015019754)	lpar1 (ENSNFUG00015019784)	ENSNFUG00015019789	ENSNFUG00015019793
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT01090000260059.a.b.b.a.a.a.a.b.a.a.a.b	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000165675.m	ENSGT00390000007731
NAME_4	ANCESTRAL SPECIES	52															ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000165675.m	ENSGT00390000007731
Sheepshead minnow	MODERN SPECIES	894														fut7 (ENSCVAG00000002494)	ENSCVAG00000002497	ENSCVAG00000002509 #22	skor2 (ENSCVAG00000002515)	ier3ip1 (ENSCVAG00000002520)	hdhd2 (ENSCVAG00000002528)	katnal2 (ENSCVAG00000002538)	sigmar1 (ENSCVAG00000002545)	galt (ENSCVAG00000002554)	ccdc80 (ENSCVAG00000002564)	slc35a5 (ENSCVAG00000002580)
Mummichog	MODERN SPECIES	2238													ENSFHEG00000005664	ENSFHEG00000005643	ENSFHEG00000005631 #22	ENSFHEG00000005614 #22	skor2 (ENSFHEG00000000144)	ier3ip1 (ENSFHEG00000005580)	hdhd2 (ENSFHEG00000005535)	katnal2 (ENSFHEG00000005508)	sigmar1 (ENSFHEG00000005490)	galt (ENSFHEG00000005443)	cntfr (ENSFHEG00000005356)	tmem267 (ENSFHEG00000005343)	ENSFHEG00000005336	si:busm1-57f23.1 (ENSFHEG00000000833)	rassf6 (ENSFHEG00000005305)	MUSK (ENSFHEG00000005264)	lpar1 (ENSFHEG00000005217)	ENSFHEG00000005179	ENSFHEG00000005061
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT01090000260059.a.b.b.a.a.a.a.b.a.a.a.b	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.rb.a.a.a	ENSGT00670000098179.d.b.rb.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000176112	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000165675.m
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT01090000260059.a.b.b.a.a.a.a.b.a.a.a.b	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.rb.a.a.a	ENSGT00670000098179.d.b.rb.b	ENSGT00670000098179.d.b.rb.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872.f	ENSGT00390000003837	ENSGT00940000157703.g	ENSGT00940000157199	ENSGT00550000074872	ENSGT00940000160540
NAME_6	ANCESTRAL SPECIES	130	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT01090000260059.a.b.b.a.a.a.a.b.a.a.a.b	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.rb.a.a.a	ENSGT00670000098179.d.b.rb.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872.f
Sailfin molly	MODERN SPECIES	2502																ENSPLAG00000005422 #22
Amazon molly	MODERN SPECIES	396	paqr3b (ENSPFOG00000004513)	antxr2b (ENSPFOG00000004224)	rasgef1bb (ENSPFOG00000004093)	ENSPFOG00000003643	snx18b (ENSPFOG00000003569)	inip (ENSPFOG00000003562)	snx30 (ENSPFOG00000003420)	SLC46A2 (ENSPFOG00000003320)	ENSPFOG00000003217	PLPPR1 (ENSPFOG00000003123)	ENSPFOG00000020333	GRIN3A (ENSPFOG00000002891)	ENSPFOG00000002390	ENSPFOG00000020332	ENSPFOG00000020331	ENSPFOG00000002285 #22	skor2 (ENSPFOG00000002242)	ier3ip1 (ENSPFOG00000023361)	hdhd2 (ENSPFOG00000002151)	katnal2 (ENSPFOG00000002012)	sigmar1 (ENSPFOG00000001941)	galt (ENSPFOG00000001755)	ENSPFOG00000023375
Guppy	MODERN SPECIES	442	antxr2b (ENSPREG00000005651)	rasgef1bb (ENSPREG00000005609)	ENSPREG00000005545	snx18b (ENSPREG00000005525)	inip (ENSPREG00000005504)	snx30 (ENSPREG00000005480)	SLC46A2 (ENSPREG00000005458)	palm2akap2 (ENSPREG00000005422)	ENSPREG00000005392	PLPPR1 (ENSPREG00000005369)	ENSPREG00000005355	GRIN3A (ENSPREG00000005322)	ENSPREG00000005242	ENSPREG00000005206	ENSPREG00000005201	ENSPREG00000005174 #22	skor2 (ENSPREG00000005142)	ier3ip1 (ENSPREG00000005092)	hdhd2 (ENSPREG00000004931)	katnal2 (ENSPREG00000004873)	sigmar1 (ENSPREG00000004834)	galt (ENSPREG00000004795)	cntfr (ENSPREG00000004788)	tmem267 (ENSPREG00000004770)	ENSPREG00000004754	ENSPREG00000004737	prrc1 (ENSPREG00000004724)	ENSPREG00000004707	ENSPREG00000004688	ENSPREG00000004663	lmnb1 (ENSPREG00000004625)
Platyfish	MODERN SPECIES	22	snx18b (ENSXMAG00000002261)	inip (ENSXMAG00000002259)	snx30 (ENSXMAG00000026436)	SLC46A2 (ENSXMAG00000002251)	ENSXMAG00000002247	PLPPR1 (ENSXMAG00000002242)	GRIN3A (ENSXMAG00000002239)	ENSXMAG00000027292	ENSXMAG00000027439	ENSXMAG00000002222	ENSXMAG00000020992	ENSXMAG00000029400	ENSXMAG00000029441	ENSXMAG00000015194	ENSXMAG00000002220	ENSXMAG00000027438 #22	skor2 (ENSXMAG00000026867)	ier3ip1 (ENSXMAG00000028492)	hdhd2 (ENSXMAG00000002205)	katnal2 (ENSXMAG00000002201)	ENSXMAG00000026151	sigmar1 (ENSXMAG00000021189)	galt (ENSXMAG00000002181)	ENSXMAG00000025249	cntfr (ENSXMAG00000025576)	tmem267 (ENSXMAG00000004144)	ENSXMAG00000004122	si:busm1-57f23.1 (ENSXMAG00000024574)	rassf6 (ENSXMAG00000004159)	si:busm1-57f23.1 (ENSXMAG00000024627)	ENSXMAG00000027233
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00390000007731	ENSGT00940000165675.p.a
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.wb.a.b.a	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b.wb.a.a.b	ENSGT00390000007731
Indian medaka	MODERN SPECIES	30	ENSOMEG00000021296	snx18b (ENSOMEG00000021218)	inip (ENSOMEG00000021200)	snx30 (ENSOMEG00000000854)	SLC46A2 (ENSOMEG00000021091)	palm2akap2 (ENSOMEG00000021064)	ENSOMEG00000021034	ENSOMEG00000020994	PLPPR1 (ENSOMEG00000020977)	GRIN3A (ENSOMEG00000020948)	ENSOMEG00000020871	ENSOMEG00000020859	ENSOMEG00000020815	ENSOMEG00000020801	ENSOMEG00000020774	ENSOMEG00000020756 #22	skor2 (ENSOMEG00000020689)	ier3ip1 (ENSOMEG00000020656)	hdhd2 (ENSOMEG00000020622)	katnal2 (ENSOMEG00000020611)	sigmar1 (ENSOMEG00000020573)	galt (ENSOMEG00000020533)	cntfr (ENSOMEG00000020444)	tmem267 (ENSOMEG00000020361)	ENSOMEG00000020333	si:busm1-57f23.1 (ENSOMEG00000020224)	rassf6 (ENSOMEG00000020192)	MUSK (ENSOMEG00000020142)	lpar1 (ENSOMEG00000020137)	ENSOMEG00000020129	ENSOMEG00000020120
Javanese ricefish	MODERN SPECIES	3	slc26a1 (ENSOJAG00000010462)	paqr3b (ENSOJAG00000010452)	antxr2b (ENSOJAG00000010430)	rasgef1bb (ENSOJAG00000008917)	snx18b (ENSOJAG00000008724)	inip (ENSOJAG00000008704)	snx30 (ENSOJAG00000008681)	SLC46A2 (ENSOJAG00000008664)	ENSOJAG00000008625	PLPPR1 (ENSOJAG00000008594)	GRIN3A (ENSOJAG00000008499)	ENSOJAG00000008482	ENSOJAG00000006170	ENSOJAG00000005875	ENSOJAG00000005862	ENSOJAG00000023333 #22	skor2 (ENSOJAG00000023320)	ier3ip1 (ENSOJAG00000023317)	hdhd2 (ENSOJAG00000023304)	katnal2 (ENSOJAG00000023292)	sigmar1 (ENSOJAG00000023286)	galt (ENSOJAG00000023246)	cntfr (ENSOJAG00000023209)	tmem267 (ENSOJAG00000023201)	ENSOJAG00000023196	ENSOJAG00000023191	rassf6 (ENSOJAG00000023183)	MUSK (ENSOJAG00000023172)	lpar1 (ENSOJAG00000023163)	ENSOJAG00000023159	ENSOJAG00000023150
Oryzias_a	ANCESTRAL SPECIES	57	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000161021.b	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000165675.p.a	ENSGT00390000007731
Japanese Medaka HdrR	MODERN SPECIES	3	ENSORLG00000023662	ENSORLG00000029214	ENSORLG00000026162	ENSORLG00000030032	ENSORLG00000026717	ENSORLG00000023766	ENSORLG00000025137	ENSORLG00000025566	ENSORLG00000025199	ENSORLG00000025507	ENSORLG00000023727	ENSORLG00000026144	ENSORLG00000023566	ENSORLG00000025342	ENSORLG00000011781	ENSORLG00000011834 #22	ENSORLG00000026965	skor2 (ENSORLG00000011851)	hdhd2 (ENSORLG00000011885)	ier3ip1 (ENSORLG00000024143)	katnal2 (ENSORLG00000011896)	sigmar1 (ENSORLG00000011902)	galt (ENSORLG00000011924)	cntfr (ENSORLG00000029567)	tmem267 (ENSORLG00000011984)	ENSORLG00000029084	ENSORLG00000011994	si:busm1-57f23.1 (ENSORLG00000012002)	rassf6 (ENSORLG00000012038)	MUSK (ENSORLG00000012082)	lpar1 (ENSORLG00000012111)
Chinese medaka	MODERN SPECIES	967														ENSOSIG00000023444	ENSOSIG00000023571	ENSOSIG00000023574 #22	skor2 (ENSOSIG00000023576)	hdhd2 (ENSOSIG00000023580)	katnal2 (ENSOSIG00000023582)	sigmar1 (ENSOSIG00000023583)	galt (ENSOSIG00000023584)	cntfr (ENSOSIG00000004836)	ENSOSIG00000004839	tmem267 (ENSOSIG00000004841)	ENSOSIG00000004847	si:busm1-57f23.1 (ENSOSIG00000004852)	rassf6 (ENSOSIG00000004865)	MUSK (ENSOSIG00000004881)	lpar1 (ENSOSIG00000004895)	ENSOSIG00000005030	ENSOSIG00000009272
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Pomacentridae	ANCESTRAL SPECIES	44	ENSGT01100000263544.c.a.a.b	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Pomacentridae_A	ANCESTRAL SPECIES	86	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00390000007731
Amphiprion	ANCESTRAL SPECIES	127	ENSGT01100000263544.c.a.a.b	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050
Clown anemonefish	MODERN SPECIES	177														ENSAOCG00000013882	ENSAOCG00000013909	ENSAOCG00000013964 #22	ENSAOCG00000014003	ENSAOCG00000014024	ENSAOCG00000000891	ENSAOCG00000014047	ENSAOCG00000014058
Orange clownfish	MODERN SPECIES	7	rasgef1bb (ENSAPEG00000002968)	ENSAPEG00000002992	snx18b (ENSAPEG00000003006)	inip (ENSAPEG00000003088)	snx30 (ENSAPEG00000003107)	SLC46A2 (ENSAPEG00000003156)	palm2akap2 (ENSAPEG00000003170)	ENSAPEG00000003269	PLPPR1 (ENSAPEG00000003305)	GRIN3A (ENSAPEG00000003343)	ENSAPEG00000003381	ENSAPEG00000003450	ENSAPEG00000003733	ENSAPEG00000003746	ENSAPEG00000003756	ENSAPEG00000003770 #22	skor2 (ENSAPEG00000003830)	ier3ip1 (ENSAPEG00000003847)	hdhd2 (ENSAPEG00000003910)	katnal2 (ENSAPEG00000003929)	sigmar1 (ENSAPEG00000003979)	galt (ENSAPEG00000004017)	cntfr (ENSAPEG00000004103)	ENSAPEG00000004135	tmem267 (ENSAPEG00000004155)	PHF24 (ENSAPEG00000004196)	ENSAPEG00000004213	PIGO (ENSAPEG00000004249)	stoml2 (ENSAPEG00000004276)	UNC13B (ENSAPEG00000004293)	ENSAPEG00000004415
Spiny chromis	MODERN SPECIES	137												ENSAPOG00000020099	ENSAPOG00000020052	ENSAPOG00000020043	ENSAPOG00000020036	ENSAPOG00000020026 #22	skor2 (ENSAPOG00000019971)	ier3ip1 (ENSAPOG00000019961)	hdhd2 (ENSAPOG00000019851)	katnal2 (ENSAPOG00000019803)	sigmar1 (ENSAPOG00000019779)	galt (ENSAPOG00000019738)	ENSAPOG00000019689	ENSAPOG00000019675	ENSAPOG00000019660	KLHL17 (ENSAPOG00000019595)	noc2l (ENSAPOG00000019587)
Bicolor damselfish	MODERN SPECIES	350			antxr2b (ENSSPAG00000010890)	rasgef1bb (ENSSPAG00000010860)	ENSSPAG00000010790	snx18b (ENSSPAG00000010775)	inip (ENSSPAG00000010753)	snx30 (ENSSPAG00000010724)	SLC46A2 (ENSSPAG00000010685)	ENSSPAG00000010644	ENSSPAG00000010629	PLPPR1 (ENSSPAG00000010603)	GRIN3A (ENSSPAG00000010566)	ENSSPAG00000010515	ENSSPAG00000010486	ENSSPAG00000010439 #22	skor2 (ENSSPAG00000010427)	ier3ip1 (ENSSPAG00000010378)	hdhd2 (ENSSPAG00000010345)	katnal2 (ENSSPAG00000010320)	sigmar1 (ENSSPAG00000010306)	galt (ENSSPAG00000010263)
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b	ENSGT00390000007731
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000165675.x	ENSGT00390000007731	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000175255	ENSGT00940000165675.w.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b	ENSGT00390000007731
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b	ENSGT00390000007731
Burton s mouthbrooder	MODERN SPECIES	405	cldn23.1 (ENSHBUG00000023433)	ENSHBUG00000023389	dusp4 (ENSHBUG00000023178)	ENSHBUG00000023166	ENSHBUG00000023145	slc26a1 (ENSHBUG00000023105)	paqr3b (ENSHBUG00000023053)	antxr2b (ENSHBUG00000023003)	rasgef1bb (ENSHBUG00000022982)	ENSHBUG00000022962	snx18b (ENSHBUG00000022759)	ENSHBUG00000022718	inip (ENSHBUG00000022705)	ENSHBUG00000022687	ENSHBUG00000022671	ENSHBUG00000022635 #22	skor2 (ENSHBUG00000022616)	ier3ip1 (ENSHBUG00000022604)	hdhd2 (ENSHBUG00000022555)
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.db	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302.d	ENSGT00940000157302.c	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b.eb
P. nyererei	MODERN SPECIES	327	paqr3b (ENSPNYG00000011056)	antxr2b (ENSPNYG00000010906)	rasgef1bb (ENSPNYG00000010843)	ENSPNYG00000010793	snx18b (ENSPNYG00000010729)	inip (ENSPNYG00000010704)	snx30 (ENSPNYG00000010671)	SLC46A2 (ENSPNYG00000010657)	palm2akap2 (ENSPNYG00000010605)	ENSPNYG00000010595	PLPPR1 (ENSPNYG00000010573)	GRIN3A (ENSPNYG00000010532)	ENSPNYG00000010169	ENSPNYG00000010114	ENSPNYG00000010083	ENSPNYG00000010012 #22	skor2 (ENSPNYG00000009997)	ier3ip1 (ENSPNYG00000009939)	hdhd2 (ENSPNYG00000009906)	katnal2 (ENSPNYG00000009872)	sigmar1 (ENSPNYG00000009842)	galt (ENSPNYG00000009809)	ENSPNYG00000009780	cntfr (ENSPNYG00000009763)	tmem267 (ENSPNYG00000009749)	ENSPNYG00000009693	si:busm1-57f23.1 (ENSPNYG00000009668)	rassf6 (ENSPNYG00000009623)	MUSK (ENSPNYG00000009583)	lpar1 (ENSPNYG00000009576)	ENSPNYG00000009569
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.db	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302.d	ENSGT00940000157302.c	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b.eb.b
Eastern happy	MODERN SPECIES	19	snx18b (ENSACLG00000024685)	ENSACLG00000024698	inip (ENSACLG00000024719)	snx30 (ENSACLG00000024731)	SLC46A2 (ENSACLG00000024785)	palm2akap2 (ENSACLG00000024792)	ENSACLG00000024820	PLPPR1 (ENSACLG00000025059)	GRIN3A (ENSACLG00000025105)	ENSACLG00000025167	ENSACLG00000025188	ENSACLG00000025206	ENSACLG00000025219	ENSACLG00000025243	ENSACLG00000025267	ENSACLG00000025298 #22	skor2 (ENSACLG00000025351)	ier3ip1 (ENSACLG00000025360)	hdhd2 (ENSACLG00000025397)	katnal2 (ENSACLG00000025424)	sigmar1 (ENSACLG00000025457)	galt (ENSACLG00000025465)	ENSACLG00000025525	ENSACLG00000025534	ENSACLG00000025542	ENSACLG00000025558	ENSACLG00000025646	ENSACLG00000025657	cntfr (ENSACLG00000025691)	tmem267 (ENSACLG00000025698)	ENSACLG00000025706
Zebra mbuna	MODERN SPECIES	1110	paqr3b (ENSMZEG00005016683)	antxr2b (ENSMZEG00005016675)	rasgef1bb (ENSMZEG00005016666)	ENSMZEG00005016645	snx18b (ENSMZEG00005016632)	ENSMZEG00005016628	inip (ENSMZEG00005016622)	snx30 (ENSMZEG00005016614)	SLC46A2 (ENSMZEG00005016602)	ENSMZEG00005016584	PLPPR1 (ENSMZEG00005016560)	GRIN3A (ENSMZEG00005016546)	ENSMZEG00005016498	ENSMZEG00005016466	ENSMZEG00005016464	ENSMZEG00005016452 #22	skor2 (ENSMZEG00005016435)	ier3ip1 (ENSMZEG00005016424)	hdhd2 (ENSMZEG00005016415)	katnal2 (ENSMZEG00005016392)	katnal2 (ENSMZEG00005016377)	sigmar1 (ENSMZEG00005016364)	galt (ENSMZEG00005016350)	cntfr (ENSMZEG00005016321)	tmem267 (ENSMZEG00005016290)	ENSMZEG00005016276	si:busm1-57f23.1 (ENSMZEG00005016271)	rassf6 (ENSMZEG00005016261)	MUSK (ENSMZEG00005016242)	lpar1 (ENSMZEG00005016234)	ENSMZEG00005016185
Lyretail cichlid	MODERN SPECIES	328	paqr3b (ENSNBRG00000010143)	antxr2b (ENSNBRG00000010166)	rasgef1bb (ENSNBRG00000010210)	ENSNBRG00000010251	snx18b (ENSNBRG00000010311)	inip (ENSNBRG00000010323)	snx30 (ENSNBRG00000010343)	SLC46A2 (ENSNBRG00000010376)	palm2akap2 (ENSNBRG00000010393)	ENSNBRG00000010411	PLPPR1 (ENSNBRG00000010422)	ENSNBRG00000010441	ENSNBRG00000010490	ENSNBRG00000010512	ENSNBRG00000010565	ENSNBRG00000010587 #22	skor2 (ENSNBRG00000010622)	ier3ip1 (ENSNBRG00000010632)	hdhd2 (ENSNBRG00000010691)	katnal2 (ENSNBRG00000010733)	sigmar1 (ENSNBRG00000010795)	galt (ENSNBRG00000010833)	ENSNBRG00000010869	cntfr (ENSNBRG00000010892)	tmem267 (ENSNBRG00000010908)	ENSNBRG00000010921	si:busm1-57f23.1 (ENSNBRG00000010930)	rassf6 (ENSNBRG00000010943)	MUSK (ENSNBRG00000010974)	lpar1 (ENSNBRG00000011013)	ENSNBRG00000011022
Nile tilapia	MODERN SPECIES	19	snx30 (ENSONIG00000004082)	slc46a2 (ENSONIG00000004086)	palm2akap2 (ENSONIG00000004088)	ENSONIG00000029737	ENSONIG00000030482	PLPPR1 (ENSONIG00000004093)	GRIN3A (ENSONIG00000004096)	ENSONIG00000004099	ENSONIG00000039011	ENSONIG00000027843	ENSONIG00000041778	ENSONIG00000035892	ENSONIG00000028442	ENSONIG00000036948	ENSONIG00000027706	ENSONIG00000004109 #22	skor2 (ENSONIG00000004110)	ier3ip1 (ENSONIG00000035044)	hdhd2 (ENSONIG00000004113)	katnal2 (ENSONIG00000004125)	sigmar1 (ENSONIG00000004128)	galt (ENSONIG00000004133)	ENSONIG00000027295	ENSONIG00000013120	cntfr (ENSONIG00000013119)	ENSONIG00000039438	tmem267 (ENSONIG00000029909)	ENSONIG00000013117	si:busm1-57f23.1 (ENSONIG00000039089)	rassf6 (ENSONIG00000013115)	MUSK (ENSONIG00000013110)
Midas cichlid	MODERN SPECIES	688												PLPPR1 (ENSACIG00000023955)	GRIN3A (ENSACIG00000023957)	ENSACIG00000023958	ENSACIG00000023960	ENSACIG00000023961 #22	skor2 (ENSACIG00000023963)	ier3ip1 (ENSACIG00000023964)	hdhd2 (ENSACIG00000023965)	katnal2 (ENSACIG00000023967)	sigmar1 (ENSACIG00000023968)	galt (ENSACIG00000000175)	ENSACIG00000000243	cntfr (ENSACIG00000000283)	tmem267 (ENSACIG00000000331)	ENSACIG00000000348	si:busm1-57f23.1 (ENSACIG00000000377)	ENSACIG00000000407	rassf6 (ENSACIG00000000433)	MUSK (ENSACIG00000000480)	lpar1 (ENSACIG00000000524)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c #22
Tetraodon	MODERN SPECIES	26	mapk8ip1a (ENSTNIG00000004852)	cry2 (ENSTNIG00000004851)	cry2 (ENSTNIG00000004850)	trhr2 (ENSTNIG00000004849)	ENSTNIG00000004848	coch (ENSTNIG00000004843)	ehd4 (ENSTNIG00000004842)	foxg1a (ENSTNIG00000004841)	egr2b (ENSTNIG00000004834)	adoa (ENSTNIG00000004833)	ENSTNIG00000004832	egr2b (ENSTNIG00000004831)	PTGR3 (ENSTNIG00000004830)	ENSTNIG00000004829	ENSTNIG00000004828	ENSTNIG00000004827 #22	atp1b2a (ENSTNIG00000004825)	ENSTNIG00000004824	ENSTNIG00000004812	ENSTNIG00000004811	cdc42se1 (ENSTNIG00000000249)	cdc42se1 (ENSTNIG00000001155)	gabpb2a (ENSTNIG00000004810)	ENSTNIG00000004809 ##36	ENSTNIG00000004789	mmd (ENSTNIG00000004787)	eif4g1a (ENSTNIG00000004781)	CLCN2 (ENSTNIG00000004780)	zp2l2 (ENSTNIG00000004779)	ENSTNIG00000004778	ENSTNIG00000004773
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Ballan wrasse	MODERN SPECIES	94	slc26a1 (ENSLBEG00000021991)	paqr3b (ENSLBEG00000021967)	antxr2b (ENSLBEG00000021940)	rasgef1bb (ENSLBEG00000021915)	ENSLBEG00000021879	snx18b (ENSLBEG00000021857)	ENSLBEG00000021833	snx30 (ENSLBEG00000021797)	SLC46A2 (ENSLBEG00000021759)	palm2akap2 (ENSLBEG00000021743)	ENSLBEG00000021730	PLPPR1 (ENSLBEG00000021686)	GRIN3A (ENSLBEG00000021639)	ENSLBEG00000021607	ENSLBEG00000021593	ENSLBEG00000021560 #22	skor2 (ENSLBEG00000021546)	ENSLBEG00000021530	ENSLBEG00000021515	hdhd2 (ENSLBEG00000021490)	katnal2 (ENSLBEG00000021429)	sigmar1 (ENSLBEG00000021385)	galt (ENSLBEG00000021338)	ENSLBEG00000021133	ENSLBEG00000021078	ENSLBEG00000021021	ENSLBEG00000020989	ENSLBEG00000020953	fktn (ENSLBEG00000020900)	UFC1 (ENSLBEG00000020876)	ythdc1 (ENSLBEG00000020831)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000161931	ENSGT00940000161051.a.b	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000161051.a.b	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000161051.a.b	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
European seabass	MODERN SPECIES	9	rasgef1bb (ENSDLAG00005011529)	ENSDLAG00005012556	snx18b (ENSDLAG00005012573)	ENSDLAG00005012590	INIP (ENSDLAG00005034143)	snx30 (ENSDLAG00005033001)	SLC46A2 (ENSDLAG00005012643)	palm2akap2 (ENSDLAG00005012662)	ENSDLAG00005012688	ENSDLAG00005012711	ENSDLAG00005012750	ENSDLAG00005012808	ENSDLAG00005032241	ENSDLAG00005032011	ENSDLAG00005013932	ENSDLAG00005013941 #22	skor2 (ENSDLAG00005014188)	ier3ip1 (ENSDLAG00005027076)	hdhd2 (ENSDLAG00005014203)	katnal2 (ENSDLAG00005014233)	galt (ENSDLAG00005014366)	cntfr (ENSDLAG00005014939)	ENSDLAG00005014982	ENSDLAG00005033181	ENSDLAG00005014998	si:busm1-57f23.1 (ENSDLAG00005015004)	ENSDLAG00005015018	ENSDLAG00005015059	lpar1 (ENSDLAG00005015130)	ENSDLAG00005015141	ENSDLAG00005028797
Large yellow croaker	MODERN SPECIES	3	snx18b (ENSLCRG00005023622)	ENSLCRG00005023623	inip (ENSLCRG00005023624)	snx30 (ENSLCRG00005023626)	SLC46A2 (ENSLCRG00005023627)	palm2akap2 (ENSLCRG00005023628)	ENSLCRG00005023629	ENSLCRG00005023632	PLPPR1 (ENSLCRG00005023634)	GRIN3A (ENSLCRG00005023636)	ENSLCRG00005023648	ENSLCRG00005023712	ENSLCRG00005001532	ENSLCRG00005001558	ENSLCRG00005001569	ENSLCRG00005001615 #22	skor2 (ENSLCRG00005002180)	ier3ip1 (ENSLCRG00005002185)	hdhd2 (ENSLCRG00005002190)	katnal2 (ENSLCRG00005002199)	sigmar1 (ENSLCRG00005002203)	galt (ENSLCRG00005002212)	cntfr (ENSLCRG00005002282)	tmem267 (ENSLCRG00005002287)	ENSLCRG00005002288	si:busm1-57f23.1 (ENSLCRG00005002289)	ENSLCRG00005002292	rassf6 (ENSLCRG00005002296)	MUSK (ENSLCRG00005002302)	lpar1 (ENSLCRG00005002303)	ENSLCRG00005002304
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010014465	snx18b (ENSSAUG00010014459)	ENSSAUG00010014458	inip (ENSSAUG00010014456)	snx30 (ENSSAUG00010014452)	SLC46A2 (ENSSAUG00010014446)	palm2akap2 (ENSSAUG00010014443)	ENSSAUG00010014435	PLPPR1 (ENSSAUG00010014433)	GRIN3A (ENSSAUG00010014429)	ENSSAUG00010013618	ENSSAUG00010013608	ENSSAUG00010013607	ENSSAUG00010013606	ENSSAUG00010013605	ENSSAUG00010013430 #22	skor2 (ENSSAUG00010013422)	ier3ip1 (ENSSAUG00010013420)	hdhd2 (ENSSAUG00010013415)	katnal2 (ENSSAUG00010013404)	sigmar1 (ENSSAUG00010013401)	galt (ENSSAUG00010013371)	cntfr (ENSSAUG00010013358)	tmem267 (ENSSAUG00010013354)	ENSSAUG00010013348	si:busm1-57f23.1 (ENSSAUG00010013344)	ENSSAUG00010013341	rassf6 (ENSSAUG00010013337)	MUSK (ENSSAUG00010013320)	lpar1 (ENSSAUG00010013315)	ENSSAUG00010013309
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b	ENSGT00390000007731
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b	ENSGT00390000007731
Pike perch	MODERN SPECIES	92											ENSSLUG00000022583	ENSSLUG00000022590	ENSSLUG00000022646	ENSSLUG00000022992	ENSSLUG00000022995	ENSSLUG00000023017 #22	skor2 (ENSSLUG00000023142)	ier3ip1 (ENSSLUG00000023158)	hdhd2 (ENSSLUG00000023163)	katnal2 (ENSSLUG00000023176)	sigmar1 (ENSSLUG00000023185)	galt (ENSSLUG00000023216)	ENSSLUG00000023457	cntfr (ENSSLUG00000023460)	ENSSLUG00000023472	tmem267 (ENSSLUG00000023475)	ENSSLUG00000023483	si:busm1-57f23.1 (ENSSLUG00000023495)	rassf6 (ENSSLUG00000023501)	MUSK (ENSSLUG00000023505)	lpar1 (ENSSLUG00000023523)
Channel bull blenny	MODERN SPECIES	3	rasgef1bb (ENSCGOG00000011155)	ENSCGOG00000011140	snx18b (ENSCGOG00000011138)	ENSCGOG00000011134	ENSCGOG00000011133	snx30 (ENSCGOG00000011098)	SLC46A2 (ENSCGOG00000011091)	palm2akap2 (ENSCGOG00000011084)	ENSCGOG00000011081	PLPPR1 (ENSCGOG00000011076)	GRIN3A (ENSCGOG00000011068)	ENSCGOG00000009187	ENSCGOG00000009127	ENSCGOG00000009125	ENSCGOG00000009123	ENSCGOG00000007945 #22	skor2 (ENSCGOG00000007925)	hdhd2 (ENSCGOG00000007680)	katnal2 (ENSCGOG00000007571)	sigmar1 (ENSCGOG00000007566)	galt (ENSCGOG00000007386)	cntfr (ENSCGOG00000007365)	tmem267 (ENSCGOG00000007357)	ENSCGOG00000007353	ENSCGOG00000007351	MUSK (ENSCGOG00000007333)	lpar1 (ENSCGOG00000007326)	ENSCGOG00000007320	ENSCGOG00000007315	ENSCGOG00000007238	ENSCGOG00000004246
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000157449.a	ENSGT01090000259997.a.d.b.a.a.b.b	ENSGT00390000000360	ENSGT00940000161555	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460
Stickleback	MODERN SPECIES	13	slc26a1 (ENSGACG00000017745)	paqr3b (ENSGACG00000017750)	antxr2b (ENSGACG00000017757)	rasgef1bb (ENSGACG00000017774)	ENSGACG00000017776	snx18b (ENSGACG00000017780)	snx30 (ENSGACG00000017783)	SLC46A2 (ENSGACG00000017786)	ENSGACG00000017791	PLPPR1 (ENSGACG00000017793)	GRIN3A (ENSGACG00000017805)	ENSGACG00000017807	ENSGACG00000017813	ENSGACG00000017815	ENSGACG00000017817	ENSGACG00000017820 #22	skor2 (ENSGACG00000017822)	hdhd2 (ENSGACG00000017824)	katnal2 (ENSGACG00000017829)	sigmar1 (ENSGACG00000017833)	galt (ENSGACG00000017839)	cntfr (ENSGACG00000017859)	ENSGACG00000017862	tmem267 (ENSGACG00000017864)	RAB27B (ENSGACG00000017867)	BRCC3 (ENSGACG00000017873)	ENSGACG00000017875	ENSGACG00000017876	pum3 (ENSGACG00000017878)	KCNV2 (ENSGACG00000017884)	vldlr (ENSGACG00000017886)
Lumpfish	MODERN SPECIES	3	antxr2b (ENSCLMG00005009730)	rasgef1bb (ENSCLMG00005008767)	snx18b (ENSCLMG00005008692)	ENSCLMG00005008691	inip (ENSCLMG00005008689)	snx30 (ENSCLMG00005008688)	SLC46A2 (ENSCLMG00005008687)	palm2akap2 (ENSCLMG00005008679)	ENSCLMG00005008675	ENSCLMG00005008673	PLPPR1 (ENSCLMG00005008671)	GRIN3A (ENSCLMG00005008669)	ENSCLMG00005007883	ENSCLMG00005007881	ENSCLMG00005007880	ENSCLMG00005007875 #22	ENSCLMG00005007873	skor2 (ENSCLMG00005007872)	ier3ip1 (ENSCLMG00005007871)	hdhd2 (ENSCLMG00005007869)	katnal2 (ENSCLMG00005007867)	sigmar1 (ENSCLMG00005007865)	galt (ENSCLMG00005007797)	cntfr (ENSCLMG00005007793)	tmem267 (ENSCLMG00005007792)	RAB27B (ENSCLMG00005007791)	ENSCLMG00005007790	BRCC3 (ENSCLMG00005007787)	ENSCLMG00005007785	ENSCLMG00005007782	pum3 (ENSCLMG00005007780)
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000175255	ENSGT00390000007731
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000175255	ENSGT00940000165675
Climbing perch	MODERN SPECIES	13	rasgef1bb (ENSATEG00000021833)	ENSATEG00000000032	snx18b (ENSATEG00000000071)	INIP (ENSATEG00000027741)	snx30 (ENSATEG00000000086)	SLC46A2 (ENSATEG00000000093)	palm2akap2 (ENSATEG00000029100)	ENSATEG00000029247	ENSATEG00000000116	ENSATEG00000000158	ENSATEG00000000215	ENSATEG00000028652	ENSATEG00000027331	ENSATEG00000025380	ENSATEG00000000427	ENSATEG00000000435 #22	skor2 (ENSATEG00000000488)	ier3ip1 (ENSATEG00000028520)	hdhd2 (ENSATEG00000000583)	katnal2 (ENSATEG00000000594)	sigmar1 (ENSATEG00000026784)	galt (ENSATEG00000000677)	cntfr (ENSATEG00000000735)	ENSATEG00000000743	ENSATEG00000028013	si:busm1-57f23.1 (ENSATEG00000000765)	ENSATEG00000000772	ENSATEG00000000833	lpar1 (ENSATEG00000000900)	ENSATEG00000028648	ENSATEG00000025876
Siamese fighting fish	MODERN SPECIES	3	dusp4 (ENSBSLG00000017732)	ENSBSLG00000017717	slc26a1 (ENSBSLG00000017692)	paqr3b (ENSBSLG00000017670)	antxr2b (ENSBSLG00000017631)	rasgef1bb (ENSBSLG00000017238)	snx18b (ENSBSLG00000017185)	snx30 (ENSBSLG00000017034)	SLC46A2 (ENSBSLG00000016995)	palm2akap2 (ENSBSLG00000016910)	ENSBSLG00000016881	PLPPR1 (ENSBSLG00000016812)	GRIN3A (ENSBSLG00000016680)	ENSBSLG00000013846	ENSBSLG00000013777	ENSBSLG00000013287 #22	skor2 (ENSBSLG00000012258)	hdhd2 (ENSBSLG00000012198)	katnal2 (ENSBSLG00000012134)	sigmar1 (ENSBSLG00000012113)	galt (ENSBSLG00000012087)	ENSBSLG00000012063	cntfr (ENSBSLG00000011964)	tmem267 (ENSBSLG00000011939)	ENSBSLG00000011926	si:busm1-57f23.1 (ENSBSLG00000011899)	rassf6 (ENSBSLG00000011862)	MUSK (ENSBSLG00000011706)	lpar1 (ENSBSLG00000011620)	ENSBSLG00000011590	ENSBSLG00000008791
Zig-zag eel	MODERN SPECIES	3	rasgef1bb (ENSMAMG00000005869)	ENSMAMG00000005808	snx18b (ENSMAMG00000005798)	INIP (ENSMAMG00000028703)	snx30 (ENSMAMG00000005759)	SLC46A2 (ENSMAMG00000005756)	palm2akap2 (ENSMAMG00000005740)	ENSMAMG00000024336	ENSMAMG00000025821	ENSMAMG00000005687	ENSMAMG00000005475	ENSMAMG00000005449	ENSMAMG00000026505	ENSMAMG00000005436	ENSMAMG00000025753	ENSMAMG00000005395 #22	skor2 (ENSMAMG00000005366)	ier3ip1 (ENSMAMG00000026167)	hdhd2 (ENSMAMG00000005331)	katnal2 (ENSMAMG00000005300)	sigmar1 (ENSMAMG00000005282)	galt (ENSMAMG00000005256)	ENSMAMG00000005248	cntfr (ENSMAMG00000005218)	ENSMAMG00000005199	ENSMAMG00000027821	si:busm1-57f23.1 (ENSMAMG00000024369)	ENSMAMG00000005165	ENSMAMG00000005099	lpar1 (ENSMAMG00000026280)	ENSMAMG00000018616
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Carangaria_A	ANCESTRAL SPECIES	34	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00670000098179.d.b
Seriola	ANCESTRAL SPECIES	110	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000013183.d.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b.z	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000163716.d.a	ENSGT00940000159886	ENSGT00940000158226
Greater amberjack	MODERN SPECIES	203	rasgef1bb (ENSSDUG00000019639)	ENSSDUG00000019603	snx18b (ENSSDUG00000019592)	ENSSDUG00000019579	inip (ENSSDUG00000019568)	snx30 (ENSSDUG00000019556)	SLC46A2 (ENSSDUG00000019538)	palm2akap2 (ENSSDUG00000019519)	ENSSDUG00000019493	PLPPR1 (ENSSDUG00000019465)	GRIN3A (ENSSDUG00000019437)	ENSSDUG00000019400	ENSSDUG00000019385	ENSSDUG00000019370	ENSSDUG00000019363	ENSSDUG00000019325 #22	skor2 (ENSSDUG00000019267)	ier3ip1 (ENSSDUG00000019225)	hdhd2 (ENSSDUG00000019204)	katnal2 (ENSSDUG00000019183)	sigmar1 (ENSSDUG00000019158)	galt (ENSSDUG00000019117)
Yellowtail amberjack	MODERN SPECIES	2759	antxr2b (ENSSLDG00000014796)	rasgef1bb (ENSSLDG00000014768)	ENSSLDG00000014688	snx18b (ENSSLDG00000014666)	ENSSLDG00000014651	inip (ENSSLDG00000014628)	snx30 (ENSSLDG00000014590)	SLC46A2 (ENSSLDG00000014576)	ENSSLDG00000014527	ENSSLDG00000014493	PLPPR1 (ENSSLDG00000014463)	GRIN3A (ENSSLDG00000014415)	ENSSLDG00000014352	ENSSLDG00000014327	ENSSLDG00000014316	ENSSLDG00000014280 #22	skor2 (ENSSLDG00000014249)	hdhd2 (ENSSLDG00000014216)	katnal2 (ENSSLDG00000014193)	sigmar1 (ENSSLDG00000014161)	galt (ENSSLDG00000014129)	ENSSLDG00000014116	cntfr (ENSSLDG00000014093)	tmem267 (ENSSLDG00000014069)	ENSSLDG00000014047	si:busm1-57f23.1 (ENSSLDG00000014036)	ENSSLDG00000014008	rassf6 (ENSSLDG00000013990)	MUSK (ENSSLDG00000013946)
Barramundi perch	MODERN SPECIES	174	antxr2b (ENSLCAG00010000326)	rasgef1bb (ENSLCAG00010000266)	snx18b (ENSLCAG00010000181)	ENSLCAG00010000174	inip (ENSLCAG00010000169)	snx30 (ENSLCAG00010000162)	SLC46A2 (ENSLCAG00010028178)	palm2akap2 (ENSLCAG00010028177)	ENSLCAG00010028174	PLPPR1 (ENSLCAG00010028172)	GRIN3A (ENSLCAG00010028170)	ENSLCAG00010028168	ENSLCAG00010028162	ENSLCAG00010028161	ENSLCAG00010028160	ENSLCAG00010028159 #22	SKOR2 (ENSLCAG00010028157)	ier3ip1 (ENSLCAG00010028156)	hdhd2 (ENSLCAG00010028155)
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.s.b	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT00670000098179.d.b	ENSGT00940000164878.b	ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00390000003050	ENSGT00940000165521.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00390000007731	ENSGT00940000165675
Tongue sole	MODERN SPECIES	5	SNX18 (ENSCSEG00000020292)	inip (ENSCSEG00000020290)	snx30 (ENSCSEG00000020284)	SLC46A2 (ENSCSEG00000020283)	palm2akap2 (ENSCSEG00000020278)	ENSCSEG00000020276	ENSCSEG00000020275	ENSCSEG00000020202	ENSCSEG00000020200	PLPPR1 (ENSCSEG00000020186)	GRIN3A (ENSCSEG00000020181)	ENSCSEG00000020178	ENSCSEG00000020091	ENSCSEG00000020089	ENSCSEG00000020087	ENSCSEG00000020081 #22	skor2 (ENSCSEG00000020079)	ier3ip1 (ENSCSEG00000020075)	hdhd2 (ENSCSEG00000020072)	katnal2 (ENSCSEG00000020068)	sigmar1 (ENSCSEG00000020064)	galt (ENSCSEG00000020060)	ENSCSEG00000020059	ENSCSEG00000020058	ENSCSEG00000020057	cntfr (ENSCSEG00000020037)	ENSCSEG00000020030	ENSCSEG00000020026	ENSCSEG00000020022	ENSCSEG00000020018	rassf6 (ENSCSEG00000020010)
Turbot	MODERN SPECIES	7	ENSSMAG00000017883	ENSSMAG00000017837	rasgef1bb (ENSSMAG00000017793)	ENSSMAG00000017766	snx18b (ENSSMAG00000017753)	INIP (ENSSMAG00000017739)	snx30 (ENSSMAG00000017724)	SLC46A2 (ENSSMAG00000017714)	palm2akap2 (ENSSMAG00000025348)	ENSSMAG00000017651	ENSSMAG00000017574	ENSSMAG00000017619	ENSSMAG00000017509	ENSSMAG00000034425	ENSSMAG00000017504	ENSSMAG00000017463 #22	skor2 (ENSSMAG00000027955)	hdhd2 (ENSSMAG00000017391)	katnal2 (ENSSMAG00000017378)	ENSSMAG00000017361	sigmar1 (ENSSMAG00000033064)	galt (ENSSMAG00000017338)	cntfr (ENSSMAG00000017313)	ENSSMAG00000028165	ENSSMAG00000017266	si:busm1-57f23.1 (ENSSMAG00000034225)	ENSSMAG00000017182	ENSSMAG00000017146	ENSSMAG00000017104	lpar1 (ENSSMAG00000017084)	ENSSMAG00000017065
Protacanthopterygii	ANCESTRAL SPECIES	57																ENSGT00940000153499.b.b.c #22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Northern pike	MODERN SPECIES	22															cldn23.1 (ENSELUG00000012895)	ENSELUG00000012992 #22	skor2 (ENSELUG00000013092)	ier3ip1 (ENSELUG00000034693)	hdhd2 (ENSELUG00000000478)	katnal2 (ENSELUG00000013258)	sigmar1 (ENSELUG00000030560)	galt (ENSELUG00000013301)	cntfr (ENSELUG00000013317)	ENSELUG00000005649	ENSELUG00000013333	tmem267 (ENSELUG00000013346)	si:busm1-57f23.1 (ENSELUG00000013372)	rassf6 (ENSELUG00000013400)	MUSK (ENSELUG00000000493)	lpar1 (ENSELUG00000013451)	ENSELUG00000013529
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c.a #22
Huchen	MODERN SPECIES	7086																ENSHHUG00000011727 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c.a #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c.a #22
Atlantic salmon	MODERN SPECIES	36																ENSSSAG00000106033 #22	ENSSSAG00000073409 #23
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.c.b #22
Huchen	MODERN SPECIES	6314																ENSHHUG00000022856 #22
Actinopterygii	ANCESTRAL SPECIES	92	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000153499.b.b.d #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Reedfish	MODERN SPECIES	8	ints14 (ENSECRG00000016954) #9	SLC24A1 (ENSECRG00000016985) #10	dennd4a (ENSECRG00000017079) #11	ENSECRG00000017309	ENSECRG00000017340	ENSECRG00000017450 #13	dis3l (ENSECRG00000017497) #14	tipin (ENSECRG00000017552) #15	map2k1 (ENSECRG00000017617) #16	rpl4 (ENSECRG00000017761) #18	zwilch (ENSECRG00000017849) #19	lctla (ENSECRG00000017984) #20	crybgx (ENSECRG00000018775)	snapc5 (ENSECRG00000018817) #17	smad6a (ENSECRG00000018835) #21	smad3b (ENSECRG00000018886) #22	aagab (ENSECRG00000019047) #23	iqch (ENSECRG00000019116) #25	zgc:162898 (ENSECRG00000019374) #26	map2k5 (ENSECRG00000019409) #27	ENSECRG00000019494 #28	ENSECRG00000019525 #29	PIAS1 (ENSECRG00000019551) #29	calml4a (ENSECRG00000019589) #30	hmg20a (ENSECRG00000019610)	PEAK1 (ENSECRG00000019637)	ENSECRG00000019664	ppib (ENSECRG00000019696)	PCLAF (ENSECRG00000019739)	csnk1g1 (ENSECRG00000019804)	ENSECRG00000020166
Neopterygii	ANCESTRAL SPECIES	85	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT01030000234532.B.e.b.e #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000153499.b.b.d #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Spotted gar	MODERN SPECIES	669	hacd3 (ENSLOCG00000013803) #8	ints14 (ENSLOCG00000013812) #9	SLC24A1 (ENSLOCG00000013820) #10	dennd4a (ENSLOCG00000013827) #11	rab11a (ENSLOCG00000013835) #12	ENSLOCG00000013837 #13	dis3l (ENSLOCG00000013846) #14	tipin (ENSLOCG00000013854) #15	map2k1 (ENSLOCG00000013858) #16	rpl4 (ENSLOCG00000013867) #18	zwilch (ENSLOCG00000013873) #19	lctla (ENSLOCG00000013878) #20	crybgx (ENSLOCG00000013888)	snapc5 (ENSLOCG00000013891) #17	smad6a (ENSLOCG00000013892) #21	smad3b (ENSLOCG00000013897) #22	aagab (ENSLOCG00000013907) #23	iqch (ENSLOCG00000013914) #25	zgc:162898 (ENSLOCG00000013920) #26	map2k5 (ENSLOCG00000013923) #27	skor1a (ENSLOCG00000013929) #28	PIAS1 (ENSLOCG00000013933) #29	calml4a (ENSLOCG00000013940) #30	CLN6 (ENSLOCG00000013946) #31	ENSLOCG00000013948	itga11a (ENSLOCG00000013952) #34	CORO2B (ENSLOCG00000013967) #35	anp32a (ENSLOCG00000013972) #36	NOX5 (ENSLOCG00000013975)	glcea (ENSLOCG00000013983)	paqr5a (ENSLOCG00000013987)
Osteoglossocephalai	ANCESTRAL SPECIES	148	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT01030000234532.B.e.b.e #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A ##13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000153499.b.b.d #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT01030000234534.B.a.b	ENSGT00950000182965.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00950000182907.a.b.b.b #36
Osteoglossiformes	ANCESTRAL SPECIES	37	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A.sb	ENSGT00530000063675.a.n	ENSGT01040000240503.A.a.a.e	ENSGT00390000018400.a	ENSGT00940000154914 #12	ENSGT00940000155333.A ##13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00940000157369 #20	ENSGT00940000165890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b.d #22	ENSGT00390000007218 #23	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00950000182965.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00950000182907.a.b.b.b.a #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34
P. kingsleyae	MODERN SPECIES	146	ENTREP2 (ENSPKIG00000014858)	GOLM2 (ENSPKIG00000014876)	CTDSPL2 (ENSPKIG00000014916)	ENSPKIG00000014991	EIF3J (ENSPKIG00000015047)	RAB11A (ENSPKIG00000015102) #12	ENSPKIG00000015215 ##13	ENSPKIG00000015455	dis3l (ENSPKIG00000015490) #14	ENSPKIG00000015547	tipin (ENSPKIG00000015565) #15	map2k1 (ENSPKIG00000015608) #16	rpl4 (ENSPKIG00000015644) #18	lctla (ENSPKIG00000015716) #20	smad6a (ENSPKIG00000015767) #21	smad3b (ENSPKIG00000015799) #22	aagab (ENSPKIG00000015838) #23	zgc:162898 (ENSPKIG00000015892) #26	map2k5 (ENSPKIG00000015970) #27	ENSPKIG00000016124	skor1a (ENSPKIG00000016152) #28	PIAS1 (ENSPKIG00000016189) #29	morf4l1 (ENSPKIG00000016253)	UACA (ENSPKIG00000016315)	tle3a (ENSPKIG00000016380)	ENSPKIG00000016421	kif23 (ENSPKIG00000016508)	paqr5a (ENSPKIG00000016740)	glceb (ENSPKIG00000016806)	NOX5 (ENSPKIG00000016853)	anp32a (ENSPKIG00000016897) #36
Asian bonytongue	MODERN SPECIES	2													lctla (ENSSFOG00015008481) #20	crybgx (ENSSFOG00015008536)	smad6a (ENSSFOG00015029740) #21	smad3b (ENSSFOG00015008603) #22	aagab (ENSSFOG00015008638) #23	zgc:162898 (ENSSFOG00015008646) #26	map2k5 (ENSSFOG00015008680) #27	ENSSFOG00015028767	skor1a (ENSSFOG00015008718) #28	PIAS1 (ENSSFOG00015008750) #29	ENSSFOG00015027278	morf4l1 (ENSSFOG00015008833)	UACA (ENSSFOG00015008887)	tle3a (ENSSFOG00015008917)	kif23 (ENSSFOG00015009021)	paqr5a (ENSSFOG00015009123)	glceb (ENSSFOG00015009150)	NOX5 (ENSSFOG00015009192)	anp32a (ENSSFOG00015032753) #36
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.a.a #22
Euteleosteomorpha	ANCESTRAL SPECIES	194															ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837.o	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34
Acanthomorphata	ANCESTRAL SPECIES	79														ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Euacanthomorphacea	ANCESTRAL SPECIES	46														ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Oryzias	ANCESTRAL SPECIES	13	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Indian medaka	MODERN SPECIES	26	cops2 (ENSOMEG00000009424)	fgf7 (ENSOMEG00000009379)	dtwd1 (ENSOMEG00000009361)	ENSOMEG00000009339	spata5l1 (ENSOMEG00000009305)	zgc:153317 (ENSOMEG00000009283)	slc30a4 (ENSOMEG00000009252)	bloc1s6 (ENSOMEG00000009201)	mibp2 (ENSOMEG00000009172)	mfge8a (ENSOMEG00000009145)	abhd2a (ENSOMEG00000009120)	ENSOMEG00000009080	slc39a1 (ENSOMEG00000009055)	tmem208 (ENSOMEG00000009028)	smad6a (ENSOMEG00000008997) #21	SMAD3 (ENSOMEG00000008975) #22	map2k5 (ENSOMEG00000008936) #27	skor1a (ENSOMEG00000008837) #28	PIAS1 (ENSOMEG00000008788) #29	ENSOMEG00000008724	ENSOMEG00000008688	UACA (ENSOMEG00000008617)	TLE3 (ENSOMEG00000008528)	kif23 (ENSOMEG00000008392)	paqr5a (ENSOMEG00000008240)	glceb (ENSOMEG00000008185)	anp32a (ENSOMEG00000008151) #36	CORO2B (ENSOMEG00000008119) #35	itga11a (ENSOMEG00000008035) #34	ENSOMEG00000007855	ADAMTS7 (ENSOMEG00000007804)
Javanese ricefish	MODERN SPECIES	17	cops2 (ENSOJAG00000020919)	fgf7 (ENSOJAG00000020912)	dtwd1 (ENSOJAG00000020909)	ENSOJAG00000020868	spata5l1 (ENSOJAG00000020864)	zgc:153317 (ENSOJAG00000020860)	slc30a4 (ENSOJAG00000020847)	bloc1s6 (ENSOJAG00000020836)	mibp2 (ENSOJAG00000020828)	mfge8a (ENSOJAG00000020551)	abhd2a (ENSOJAG00000020385)	ENSOJAG00000020364	slc39a1 (ENSOJAG00000020359)	tmem208 (ENSOJAG00000020347)	smad6a (ENSOJAG00000020339) #21	SMAD3 (ENSOJAG00000020254) #22	map2k5 (ENSOJAG00000020167) #27	skor1a (ENSOJAG00000020147) #28	PIAS1 (ENSOJAG00000020086) #29	ENSOJAG00000020045	ENSOJAG00000019954	UACA (ENSOJAG00000019870)	ENSOJAG00000019843	ENSOJAG00000019826	NDST2 (ENSOJAG00000019140)	polr1c (ENSOJAG00000016249)	fbxo28 (ENSOJAG00000016245)	nvl (ENSOJAG00000016228)	degs1 (ENSOJAG00000016199)	cryzl1 (ENSOJAG00000016141)	aprt (ENSOJAG00000016129)
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00940000157545	ENSGT00390000009277	ENSGT00940000160700	ENSGT00390000004624.a.b	ENSGT00940000153766.B	ENSGT00940000159843	ENSGT00530000063301.a.b	ENSGT00490000043356.a	ENSGT00950000182870.b.a	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Japanese Medaka HdrR	MODERN SPECIES	17	slc30a4 (ENSORLG00000002464)	zgc:153317 (ENSORLG00000029581)	spata5l1 (ENSORLG00000002443)	ENSORLG00000002434	dtwd1 (ENSORLG00000002373)	fgf7 (ENSORLG00000002360)	cops2 (ENSORLG00000002351)	SECISBP2L (ENSORLG00000002324)	ENSORLG00000026175	mfge8a (ENSORLG00000002302)	abhd2a (ENSORLG00000002287)	ENSORLG00000002257	slc39a1 (ENSORLG00000029570)	tmem208 (ENSORLG00000002234)	smad6a (ENSORLG00000002227) #21	ENSORLG00000002207 #22	map2k5 (ENSORLG00000002158) #27	ENSORLG00000028158	skor1a (ENSORLG00000002083) #28	PIAS1 (ENSORLG00000002077) #29	ENSORLG00000002054	ENSORLG00000024795	ENSORLG00000002048	UACA (ENSORLG00000001992)	TLE3 (ENSORLG00000001969)	ENSORLG00000024566	ENSORLG00000024768	KIF23 (ENSORLG00000001944)	paqr5a (ENSORLG00000001912)	glceb (ENSORLG00000001883)	anp32a (ENSORLG00000001871) #36
Chinese medaka	MODERN SPECIES	877											abhd2a (ENSOSIG00000006307)	ENSOSIG00000006306	slc39a1 (ENSOSIG00000006305)	tmem208 (ENSOSIG00000006304)	SMAD6 (ENSOSIG00000006302) #21	SMAD3 (ENSOSIG00000006301) #22	map2k5 (ENSOSIG00000006299) #27	snrpd1 (ENSOSIG00000006298)	ENSOSIG00000006296 #29	ENSOSIG00000004517	UACA (ENSOSIG00000004433)	TLE3 (ENSOSIG00000023308)	paqr5a (ENSOSIG00000023110)	glceb (ENSOSIG00000023107)	kif23 (ENSOSIG00000023101)	anp32a (ENSOSIG00000023072) #36	CORO2B (ENSOSIG00000023064) #35	itga11a (ENSOSIG00000023054) #34	ENSOSIG00000023050	ADAMTS7 (ENSOSIG00000022924)	calml4a (ENSOSIG00000022876) #30
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Poecilia	ANCESTRAL SPECIES	4	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
NAME_6	ANCESTRAL SPECIES	52	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Sailfin molly	MODERN SPECIES	1096												tmem208 (ENSPLAG00000011590)	SMAD6 (ENSPLAG00000011576) #21	ENSPLAG00000011555	ENSPLAG00000011547	SMAD3 (ENSPLAG00000011537) #22	map2k5 (ENSPLAG00000000623) #27
Amazon molly	MODERN SPECIES	403	ENSPFOG00000021978	ENSPFOG00000005055	spata5l1 (ENSPFOG00000005380)	zgc:153317 (ENSPFOG00000005494)	zgc:153317 (ENSPFOG00000005496)	slc30a4 (ENSPFOG00000005499)	bloc1s6 (ENSPFOG00000005582)	mibp2 (ENSPFOG00000005643)	mfge8a (ENSPFOG00000005778)	ENSPFOG00000024476	abhd2a (ENSPFOG00000005907)	ENSPFOG00000006011	slc39a1 (ENSPFOG00000006114)	tmem208 (ENSPFOG00000006153)	smad6a (ENSPFOG00000006234) #21	SMAD3 (ENSPFOG00000006336) #22	map2k5 (ENSPFOG00000006546) #27	skor1a (ENSPFOG00000006793) #28	PIAS1 (ENSPFOG00000006900) #29	ENSPFOG00000020296	ENSPFOG00000007139	UACA (ENSPFOG00000007243)	TLE3 (ENSPFOG00000007542)	kif23 (ENSPFOG00000007858)	paqr5a (ENSPFOG00000023869)	glceb (ENSPFOG00000008134)	anp32a (ENSPFOG00000008166) #36	CORO2B (ENSPFOG00000008252) #35	itga11a (ENSPFOG00000008460) #34	ENSPFOG00000020297
Guppy	MODERN SPECIES	455	fgf7 (ENSPREG00000008601)	dtwd1 (ENSPREG00000008579)	ENSPREG00000008549	spata5l1 (ENSPREG00000008513)	zgc:153317 (ENSPREG00000008498)	slc30a4 (ENSPREG00000008454)	bloc1s6 (ENSPREG00000008429)	mibp2 (ENSPREG00000008371)	ENSPREG00000008362	mfge8a (ENSPREG00000008344)	abhd2a (ENSPREG00000008309)	ENSPREG00000008292	slc39a1 (ENSPREG00000008271)	tmem208 (ENSPREG00000008259)	smad6a (ENSPREG00000008242) #21	SMAD3 (ENSPREG00000008224) #22	map2k5 (ENSPREG00000008097) #27	skor1a (ENSPREG00000008068) #28	PIAS1 (ENSPREG00000008008) #29	ENSPREG00000007994	ENSPREG00000007965	UACA (ENSPREG00000007848)	TLE3 (ENSPREG00000007793)	kif23 (ENSPREG00000007754)	paqr5a (ENSPREG00000007606)	glceb (ENSPREG00000007567)	anp32a (ENSPREG00000007226) #36	CORO2B (ENSPREG00000007107) #35	itga11a (ENSPREG00000006903) #34	ENSPREG00000006850	ADAMTS7 (ENSPREG00000006701)
Platyfish	MODERN SPECIES	18	fgf7 (ENSXMAG00000002280)	dtwd1 (ENSXMAG00000002282)	ENSXMAG00000002284	spata5l1 (ENSXMAG00000002298)	zgc:153317 (ENSXMAG00000002303)	zgc:153317 (ENSXMAG00000024159)	slc30a4 (ENSXMAG00000002304)	bloc1s6 (ENSXMAG00000002310)	mibp2 (ENSXMAG00000002314)	mfge8a (ENSXMAG00000024531)	abhd2a (ENSXMAG00000021333)	ENSXMAG00000013063	slc39a1 (ENSXMAG00000002358)	tmem208 (ENSXMAG00000025720)	smad6a (ENSXMAG00000002372) #21	SMAD3 (ENSXMAG00000002377) #22	map2k5 (ENSXMAG00000002396) #27	skor1a (ENSXMAG00000002428) #28	PIAS1 (ENSXMAG00000017552) #29	ENSXMAG00000017550	ENSXMAG00000017532	UACA (ENSXMAG00000000373)	TLE3 (ENSXMAG00000000395)	kif23 (ENSXMAG00000000438)	paqr5a (ENSXMAG00000025024)	glceb (ENSXMAG00000024396)	ENSXMAG00000023609	anp32a (ENSXMAG00000000465) #36	CORO2B (ENSXMAG00000000471) #35	itga11a (ENSXMAG00000000479) #34	ENSXMAG00000020123
NAME_4	ANCESTRAL SPECIES	6	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475
Mummichog	MODERN SPECIES	2381	cops2 (ENSFHEG00000002635)	fgf7 (ENSFHEG00000002649)	dtwd1 (ENSFHEG00000002658)	ENSFHEG00000002718	spata5l1 (ENSFHEG00000002745)	zgc:153317 (ENSFHEG00000002784)	slc30a4 (ENSFHEG00000002802)	bloc1s6 (ENSFHEG00000002826)	mibp2 (ENSFHEG00000002843)	mfge8a (ENSFHEG00000000710)	abhd2a (ENSFHEG00000002888)	ENSFHEG00000002949	slc39a1 (ENSFHEG00000002989)	tmem208 (ENSFHEG00000003000)	smad6a (ENSFHEG00000003014) #21	SMAD3 (ENSFHEG00000003038) #22	map2k5 (ENSFHEG00000003062) #27	skor1a (ENSFHEG00000003074) #28	PIAS1 (ENSFHEG00000003099) #29	ENSFHEG00000003106
Sheepshead minnow	MODERN SPECIES	834								mibp2 (ENSCVAG00000009587)	mfge8a (ENSCVAG00000009581)	abhd2a (ENSCVAG00000009566)	ENSCVAG00000009523	slc39a1 (ENSCVAG00000009508)	tmem208 (ENSCVAG00000009505)	smad6a (ENSCVAG00000009487) #21	ENSCVAG00000009481	SMAD3 (ENSCVAG00000009473) #22	map2k5 (ENSCVAG00000009451) #27	skor1a (ENSCVAG00000009402) #28
Aplocheiloidei	ANCESTRAL SPECIES	39											ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Mangrove rivulus	MODERN SPECIES	48	pop4 (ENSKMAG00000012250)	tpcn2 (ENSKMAG00000012198)	nadsyn1 (ENSKMAG00000012135)	DOK4 (ENSKMAG00000012096)	ccdc102a (ENSKMAG00000012052)	txlng (ENSKMAG00000012016)	rbb4l (ENSKMAG00000011977)	HDGFL3 (ENSKMAG00000011937)	TSSK2 (ENSKMAG00000011920)	BNC1 (ENSKMAG00000011907)	gjd6 (ENSKMAG00000011890)	ENSKMAG00000011864	slc39a1 (ENSKMAG00000011846)	tmem208 (ENSKMAG00000011828)	smad6a (ENSKMAG00000011817) #21	SMAD3 (ENSKMAG00000011796) #22	map2k5 (ENSKMAG00000011774) #27	skor1a (ENSKMAG00000011761) #28	PIAS1 (ENSKMAG00000011737) #29	ENSKMAG00000011711	ENSKMAG00000011691	UACA (ENSKMAG00000011640)	TLE3 (ENSKMAG00000011582)
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	1622	Nfu_g_1_008338 (ENSNFUG00015022244)	CNOT1 (ENSNFUG00015022269)	N4BP1 (ENSNFUG00015022326)	siah1 (ENSNFUG00015022333)	lonp2 (ENSNFUG00015022348)	il34 (ENSNFUG00015022360)	SF3B3 (ENSNFUG00015022368)	st3gal2 (ENSNFUG00015022391)	AARS (ENSNFUG00015022393)	EXOSC6 (ENSNFUG00015022404)	psme3ip1 (ENSNFUG00015022405)	ENSNFUG00015022406	zc3h18 (ENSNFUG00015022407)	trhr2 (ENSNFUG00015022408)	zfpm1 (ENSNFUG00015022409)	SMAD3 (ENSNFUG00015022410) #22	ENSNFUG00015022411	KIAA0513 (ENSNFUG00015022416)	foxl1 (ENSNFUG00015022423)	ACD (ENSNFUG00015022424)	GAN (ENSNFUG00015022427)	CMIP (ENSNFUG00015022438)	utp4 (ENSNFUG00015022455)	CHTF8 (ENSNFUG00015022474)	has3 (ENSNFUG00015022475)	TANGO6 (ENSNFUG00015011441)	ENSNFUG00015011452	gnmt (ENSNFUG00015011461)	ENSNFUG00015011469	ENSNFUG00015011494	ENSNFUG00015011528
Turquoise killifish	MODERN SPECIES	1616	SECISBP2L (ENSNFUG00015011986)	cops2 (ENSNFUG00015011860)	fgf7 (ENSNFUG00015011824)	DTWD1 (ENSNFUG00015011814)	ENSNFUG00015011688	SPATA5L1 (ENSNFUG00015011676)	zgc:153317 (ENSNFUG00015011668)	SLC30A4 (ENSNFUG00015011646)	bloc1s6 (ENSNFUG00015011632)	MIBP2 (ENSNFUG00015011622)	ENSNFUG00015011612	ENSNFUG00015011607	MFGE8 (ENSNFUG00015010533)	ENSNFUG00015010457	SMAD6A (ENSNFUG00015010448) #21	ENSNFUG00015010440 #22	map2k5 (ENSNFUG00015010331) #27	SKOR1B (ENSNFUG00015010285) #28	PIAS1 (ENSNFUG00015010276) #29	ENSNFUG00015010263	ENSNFUG00015009472	TLE3 (ENSNFUG00015008874)	ENSNFUG00015008820	KIF23 (ENSNFUG00015007554)	ENSNFUG00015007446	paqr5a (ENSNFUG00015007434)	GLCE (ENSNFUG00015007420)	ANP32A (ENSNFUG00015007414) #36	CORO2B (ENSNFUG00015007223) #35	ENSNFUG00015007197	ENSNFUG00015007194
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc.d	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a
Pomacentridae_A	ANCESTRAL SPECIES	28	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc.d	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a
Amphiprion	ANCESTRAL SPECIES	88	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc.d	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000174432
Clown anemonefish	MODERN SPECIES	240																SMAD3 (ENSAOCG00000000546) #22
Orange clownfish	MODERN SPECIES		cops2 (ENSAPEG00000024841)	fgf7 (ENSAPEG00000000282)	dtwd1 (ENSAPEG00000000284)	ENSAPEG00000000285	spata5l1 (ENSAPEG00000000289)	zgc:153317 (ENSAPEG00000000290)	slc30a4 (ENSAPEG00000000342)	bloc1s6 (ENSAPEG00000000384)	mibp2 (ENSAPEG00000000403)	mfge8a (ENSAPEG00000000448)	abhd2a (ENSAPEG00000000449)	ENSAPEG00000000487	slc39a1 (ENSAPEG00000000497)	tmem208 (ENSAPEG00000000523)	smad6a (ENSAPEG00000000562) #21	SMAD3 (ENSAPEG00000000565) #22	map2k5 (ENSAPEG00000000578) #27	ENSAPEG00000000686	skor1a (ENSAPEG00000000759) #28	PIAS1 (ENSAPEG00000000768) #29	ENSAPEG00000000820	ENSAPEG00000000905	UACA (ENSAPEG00000000937)	TLE3 (ENSAPEG00000000988)	kif23 (ENSAPEG00000001068)	paqr5a (ENSAPEG00000001179)	glceb (ENSAPEG00000001226)	arfgap2 (ENSAPEG00000001255)	pex16 (ENSAPEG00000001278)	cars1 (ENSAPEG00000001363)	ENSAPEG00000001429
Spiny chromis	MODERN SPECIES	1108											ABHD2 (ENSAPOG00000015850)	ENSAPOG00000015893	slc39a1 (ENSAPOG00000015914)	tmem208 (ENSAPOG00000015942)	SMAD6 (ENSAPOG00000015948) #21	SMAD3 (ENSAPOG00000015998) #22
Bicolor damselfish	MODERN SPECIES	300	cops2 (ENSSPAG00000019812)	fgf7 (ENSSPAG00000019797)	dtwd1 (ENSSPAG00000019785)	ENSSPAG00000019732	spata5l1 (ENSSPAG00000019717)	zgc:153317 (ENSSPAG00000019658)	slc30a4 (ENSSPAG00000019624)	bloc1s6 (ENSSPAG00000019598)	mibp2 (ENSSPAG00000019569)	mfge8a (ENSSPAG00000019544)	abhd2a (ENSSPAG00000019523)	ENSSPAG00000019507	slc39a1 (ENSSPAG00000019503)	tmem208 (ENSSPAG00000019488)	smad6a (ENSSPAG00000019475) #21	SMAD3 (ENSSPAG00000019459) #22	map2k5 (ENSSPAG00000019430) #27	skor1a (ENSSPAG00000019416) #28	PIAS1 (ENSSPAG00000019364) #29	ENSSPAG00000019352	ENSSPAG00000019312	UACA (ENSSPAG00000019241)	TLE3 (ENSSPAG00000019170)
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000000223	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000000223	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000000223	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Burton s mouthbrooder	MODERN SPECIES	530	ENSHBUG00000012430	spata5l1 (ENSHBUG00000012355)	zgc:153317 (ENSHBUG00000012341)	slc30a4 (ENSHBUG00000012324)	bloc1s6 (ENSHBUG00000012295)	mibp2 (ENSHBUG00000012273)	HAPLN3 (ENSHBUG00000012266)	mfge8a (ENSHBUG00000012251)	abhd2a (ENSHBUG00000000339)	ENSHBUG00000012195	slc39a1 (ENSHBUG00000012168)	STOM (ENSHBUG00000012152)	ENSHBUG00000012137	tmem208 (ENSHBUG00000012128)	smad6a (ENSHBUG00000012111) #21	SMAD3 (ENSHBUG00000012089) #22	map2k5 (ENSHBUG00000012063) #27	skor1a (ENSHBUG00000012018) #28	ENSHBUG00000012004
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000000223	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000000223	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Eastern happy	MODERN SPECIES		ENSACLG00000016792	spata5l1 (ENSACLG00000016764)	zgc:153317 (ENSACLG00000016750)	slc30a4 (ENSACLG00000016688)	bloc1s6 (ENSACLG00000016660)	mibp2 (ENSACLG00000016621)	HAPLN3 (ENSACLG00000016603)	mfge8a (ENSACLG00000016536)	abhd2a (ENSACLG00000016471)	ENSACLG00000016438	slc39a1 (ENSACLG00000016397)	ENSACLG00000016386	STOM (ENSACLG00000016358)	tmem208 (ENSACLG00000016345)	smad6a (ENSACLG00000016319) #21	SMAD3 (ENSACLG00000016303) #22	map2k5 (ENSACLG00000015946) #27	skor1a (ENSACLG00000015826) #28	PIAS1 (ENSACLG00000015737) #29	ENSACLG00000015720	ENSACLG00000015610	UACA (ENSACLG00000015543)	ENSACLG00000015492	TLE3 (ENSACLG00000015299)	kif23 (ENSACLG00000015017)	paqr5a (ENSACLG00000014930)	ENSACLG00000014925	glceb (ENSACLG00000014893)	anp32a (ENSACLG00000014426) #36	CORO2B (ENSACLG00000014399) #35	itga11a (ENSACLG00000014230) #34
Zebra mbuna	MODERN SPECIES	1091	spata5l1 (ENSMZEG00005012171)	zgc:153317 (ENSMZEG00005012182)	slc30a4 (ENSMZEG00005012190)	bloc1s6 (ENSMZEG00005012197)	ENSMZEG00005012203	mibp2 (ENSMZEG00005012218)	HAPLN3 (ENSMZEG00005012228)	mfge8a (ENSMZEG00005012239)	abhd2a (ENSMZEG00005012251)	ENSMZEG00005012269	slc39a1 (ENSMZEG00005012287)	STOM (ENSMZEG00005012297)	ENSMZEG00005012309	tmem208 (ENSMZEG00005012330)	smad6a (ENSMZEG00005012354) #21	SMAD3 (ENSMZEG00005012369) #22	map2k5 (ENSMZEG00005012392) #27	skor1a (ENSMZEG00005012422) #28	PIAS1 (ENSMZEG00005012429) #29	ENSMZEG00005012461	ENSMZEG00005012470	UACA (ENSMZEG00005012517)	TLE3 (ENSMZEG00005012572)	kif23 (ENSMZEG00005012665)	paqr5a (ENSMZEG00005012750)	glceb (ENSMZEG00005012780)	anp32a (ENSMZEG00005012845) #36	CORO2B (ENSMZEG00005013278) #35	itga11a (ENSMZEG00005013320) #34	ENSMZEG00005013397	ADAMTS7 (ENSMZEG00005013408)
P. nyererei	MODERN SPECIES	479	ENSPNYG00000008639	zgc:153317 (ENSPNYG00000008598)	spata5l1 (ENSPNYG00000008552)	slc30a4 (ENSPNYG00000008509)	bloc1s6 (ENSPNYG00000008469)	mibp2 (ENSPNYG00000008446)	HAPLN3 (ENSPNYG00000008243)	mfge8a (ENSPNYG00000008173)	abhd2a (ENSPNYG00000008142)	ENSPNYG00000008122	slc39a1 (ENSPNYG00000008054)	ENSPNYG00000008039	STOM (ENSPNYG00000008024)	tmem208 (ENSPNYG00000007964)	smad6a (ENSPNYG00000007929) #21	SMAD3 (ENSPNYG00000007902) #22	map2k5 (ENSPNYG00000007807) #27	skor1a (ENSPNYG00000007786) #28	PIAS1 (ENSPNYG00000007731) #29
Lyretail cichlid	MODERN SPECIES	320	spata5l1 (ENSNBRG00000022393)	zgc:153317 (ENSNBRG00000022374)	slc30a4 (ENSNBRG00000022345)	bloc1s6 (ENSNBRG00000022319)	mibp2 (ENSNBRG00000022296)	HAPLN3 (ENSNBRG00000022217)	mfge8a (ENSNBRG00000022184)	abhd2a (ENSNBRG00000022158)	ENSNBRG00000022124	ENSNBRG00000022117	slc39a1 (ENSNBRG00000022103)	ENSNBRG00000022097	STOM (ENSNBRG00000022084)	tmem208 (ENSNBRG00000022070)	smad6a (ENSNBRG00000022000) #21	SMAD3 (ENSNBRG00000021957) #22	map2k5 (ENSNBRG00000021875) #27	skor1a (ENSNBRG00000021849) #28	PIAS1 (ENSNBRG00000021813) #29	ENSNBRG00000021798	ENSNBRG00000021781	UACA (ENSNBRG00000021740)	TLE3 (ENSNBRG00000021683)	kif23 (ENSNBRG00000021562)	paqr5a (ENSNBRG00000021452)	glceb (ENSNBRG00000021430)	anp32a (ENSNBRG00000021326) #36	CORO2B (ENSNBRG00000021273) #35	itga11a (ENSNBRG00000021060) #34	ENSNBRG00000021011	ENSNBRG00000020929
Nile tilapia	MODERN SPECIES		ENSONIG00000013323	spata5l1 (ENSONIG00000013321)	zgc:153317 (ENSONIG00000038594)	bloc1s6 (ENSONIG00000013314)	slc30a4 (ENSONIG00000013317)	mibp2 (ENSONIG00000013305)	HAPLN3 (ENSONIG00000013302)	mfge8a (ENSONIG00000013296)	abhd2a (ENSONIG00000013290)	ENSONIG00000013288	slc39a1 (ENSONIG00000013286)	STOM (ENSONIG00000020887)	ENSONIG00000042582	tmem208 (ENSONIG00000013283)	smad6a (ENSONIG00000013280) #21	SMAD3 (ENSONIG00000013271) #22	map2k5 (ENSONIG00000036681) #27	skor1a (ENSONIG00000013261) #28	ENSONIG00000027793	PIAS1 (ENSONIG00000013251) #29	ENSONIG00000013250	ENSONIG00000013241	UACA (ENSONIG00000013232)	TLE3 (ENSONIG00000013230)	kif23 (ENSONIG00000013226)	paqr5a (ENSONIG00000013225)	glceb (ENSONIG00000013224)	anp32a (ENSONIG00000005652) #36	CORO2B (ENSONIG00000005661) #35	ENSONIG00000041808	itga11a (ENSONIG00000005664) #34
Midas cichlid	MODERN SPECIES	219																SMAD3 (ENSACIG00000016525) #22	map2k5 (ENSACIG00000016556) #27	skor1a (ENSACIG00000016692) #28	PIAS1 (ENSACIG00000016703) #29	ENSACIG00000016738	ENSACIG00000016748	UACA (ENSACIG00000016798)	TLE3 (ENSACIG00000016842)	kif23 (ENSACIG00000016900)	paqr5a (ENSACIG00000017168)	glceb (ENSACIG00000017271)	anp32a (ENSACIG00000017282) #36	CORO2B (ENSACIG00000017345) #35	itga11a (ENSACIG00000017368) #34	ENSACIG00000017458	ADAMTS7 (ENSACIG00000017468)
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Zig-zag eel	MODERN SPECIES	17	COPS2 (ENSMAMG00000011732)	FGF7 (ENSMAMG00000011783)	dtwd1 (ENSMAMG00000026826)	ENSMAMG00000011790	spata5l1 (ENSMAMG00000011820)	zgc:153317 (ENSMAMG00000011844)	slc30a4 (ENSMAMG00000011974)	bloc1s6 (ENSMAMG00000012006)	mibp2 (ENSMAMG00000012031)	MFGE8 (ENSMAMG00000012053)	abhd2a (ENSMAMG00000012096)	ENSMAMG00000028309	slc39a1 (ENSMAMG00000012122)	ENSMAMG00000012132	smad6a (ENSMAMG00000012145) #21	ENSMAMG00000012151 #22	map2k5 (ENSMAMG00000012181) #27	skor1a (ENSMAMG00000012260) #28	PIAS1 (ENSMAMG00000012267) #29	ENSMAMG00000012294	ENSMAMG00000012298	UACA (ENSMAMG00000012323)	TLE3 (ENSMAMG00000012393)	KIF23 (ENSMAMG00000012444)	paqr5a (ENSMAMG00000012518)	glceb (ENSMAMG00000012531)	anp32a (ENSMAMG00000012549) #36	CORO2B (ENSMAMG00000012992) #35	itga11a (ENSMAMG00000013043) #34	ENSMAMG00000013288	ENSMAMG00000013295
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00530000063301.a.b	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Siamese fighting fish	MODERN SPECIES	14	EFL1 (ENSBSLG00000012274)	mex3b (ENSBSLG00000012539)	TMC3 (ENSBSLG00000013204)	STARD5 (ENSBSLG00000013516)	ENSBSLG00000013538	ENSBSLG00000013562	ENSBSLG00000013565	TLNRD1 (ENSBSLG00000013582)	mesd (ENSBSLG00000013590)	CEMIP (ENSBSLG00000013631)	abhd17c (ENSBSLG00000013888)	arnt2 (ENSBSLG00000013944)	slc39a1 (ENSBSLG00000015065)	tmem208 (ENSBSLG00000015071)	smad6a (ENSBSLG00000015189) #21	SMAD3 (ENSBSLG00000015371) #22	map2k5 (ENSBSLG00000015497) #27	skor1a (ENSBSLG00000015827) #28	PIAS1 (ENSBSLG00000015831) #29	ENSBSLG00000015843	ENSBSLG00000015851	UACA (ENSBSLG00000015891)	TLE3 (ENSBSLG00000015954)	ENSBSLG00000016193	kif23 (ENSBSLG00000016203)	ccnb2 (ENSBSLG00000003737)	crybgx (ENSBSLG00000003749)	lctla (ENSBSLG00000003847) #20	tipin (ENSBSLG00000003982) #15	dis3l (ENSBSLG00000003997) #14	ENSBSLG00000004040
Climbing perch	MODERN SPECIES	16	COPS2 (ENSATEG00000018268)	fgf7 (ENSATEG00000018281)	dtwd1 (ENSATEG00000029513)	ENSATEG00000018300	spata5l1 (ENSATEG00000018358)	zgc:153317 (ENSATEG00000018366)	slc30a4 (ENSATEG00000018417)	bloc1s6 (ENSATEG00000026597)	mibp2 (ENSATEG00000018455)	MFGE8 (ENSATEG00000018480)	abhd2a (ENSATEG00000018488)	ENSATEG00000018520	slc39a1 (ENSATEG00000028960)	ENSATEG00000025806	smad6a (ENSATEG00000018586) #21	ENSATEG00000018596 #22	ENSATEG00000013157	map2k5 (ENSATEG00000018621) #27	skor1a (ENSATEG00000018667) #28	PIAS1 (ENSATEG00000018702) #29	ENSATEG00000018750	ENSATEG00000018759	UACA (ENSATEG00000018820)	ENSATEG00000029029	TLE3 (ENSATEG00000018867)	KIF23 (ENSATEG00000018953)	paqr5a (ENSATEG00000019041)	glceb (ENSATEG00000029034)	anp32a (ENSATEG00000019093) #36	CORO2B (ENSATEG00000019122) #35	itga11a (ENSATEG00000019167) #34
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Seriola	ANCESTRAL SPECIES	73	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00940000157231.b	ENSGT00950000183058.A.a.d	ENSGT00950000183058.A.b.b	ENSGT00390000018895.a	ENSGT00390000000155.a.a	ENSGT00390000011985
Yellowtail amberjack	MODERN SPECIES	2930	fgf7 (ENSSLDG00000009222)	dtwd1 (ENSSLDG00000009340)	ENSSLDG00000009249	spata5l1 (ENSSLDG00000009352)	zgc:153317 (ENSSLDG00000009371)	slc30a4 (ENSSLDG00000009443)	bloc1s6 (ENSSLDG00000009498)	mibp2 (ENSSLDG00000009812)	HAPLN3 (ENSSLDG00000010248)	mfge8a (ENSSLDG00000010267)	abhd2a (ENSSLDG00000010303)	rlbp1a (ENSSLDG00000010365)	slc39a1 (ENSSLDG00000010382)	tmem208 (ENSSLDG00000010399)	smad6a (ENSSLDG00000010424) #21	SMAD3 (ENSSLDG00000010443) #22	map2k5 (ENSSLDG00000010494) #27	skor1a (ENSSLDG00000010569) #28	PIAS1 (ENSSLDG00000010594) #29	ENSSLDG00000010659	ENSSLDG00000010683	UACA (ENSSLDG00000010731)	TLE3 (ENSSLDG00000010840)	kif23 (ENSSLDG00000010981)	paqr5a (ENSSLDG00000011203)	ENSSLDG00000011227	ENSSLDG00000011255	ildr1a (ENSSLDG00000011305)	tmem39a (ENSSLDG00000011350)	PRSS23 (ENSSLDG00000011393)	ENSSLDG00000011408
Greater amberjack	MODERN SPECIES	242	fgf7 (ENSSDUG00000016430)	dtwd1 (ENSSDUG00000016453)	ENSSDUG00000016471	spata5l1 (ENSSDUG00000016519)	zgc:153317 (ENSSDUG00000016526)	slc30a4 (ENSSDUG00000016531)	bloc1s6 (ENSSDUG00000016550)	mibp2 (ENSSDUG00000016586)	HAPLN3 (ENSSDUG00000016925)	mfge8a (ENSSDUG00000016943)	abhd2a (ENSSDUG00000016969)	ENSSDUG00000017002	slc39a1 (ENSSDUG00000017030)	tmem208 (ENSSDUG00000017044)	smad6a (ENSSDUG00000017082) #21	SMAD3 (ENSSDUG00000017091) #22	map2k5 (ENSSDUG00000017109) #27	skor1a (ENSSDUG00000017148) #28	PIAS1 (ENSSDUG00000017186) #29	ENSSDUG00000017219	ENSSDUG00000017240	UACA (ENSSDUG00000017296)	TLE3 (ENSSDUG00000017338)	kif23 (ENSSDUG00000017423)	paqr5a (ENSSDUG00000017537)	gpa33a (ENSSDUG00000017645)	ENSSDUG00000017688	ildr1a (ENSSDUG00000017720)	tmem39a (ENSSDUG00000017772)	PRSS23 (ENSSDUG00000017799)	ENSSDUG00000017815
Barramundi perch	MODERN SPECIES	96	fgf7 (ENSLCAG00010001876)	dtwd1 (ENSLCAG00010001874)	ENSLCAG00010001461	spata5l1 (ENSLCAG00010001260)	zgc:153317 (ENSLCAG00010001243)	slc30a4 (ENSLCAG00010001238)	bloc1s6 (ENSLCAG00010001233)	mibp2 (ENSLCAG00010001214)	HAPLN3 (ENSLCAG00010001202)	mfge8a (ENSLCAG00010001190)	abhd2a (ENSLCAG00010001176)	ENSLCAG00010001169	slc39a1 (ENSLCAG00010001163)	tmem208 (ENSLCAG00010001154)	smad6a (ENSLCAG00010001144) #21	SMAD3 (ENSLCAG00010001077) #22	map2k5 (ENSLCAG00010001045) #27	skor1a (ENSLCAG00010001038) #28	PIAS1 (ENSLCAG00010001027) #29	ENSLCAG00010001024	ENSLCAG00010001017	UACA (ENSLCAG00010001004)	TLE3 (ENSLCAG00010000716)	kif23 (ENSLCAG00010000311)	paqr5a (ENSLCAG00010000180)	glceb (ENSLCAG00010021542)	anp32a (ENSLCAG00010021535) #36	CORO2B (ENSLCAG00010021461) #35	itga11a (ENSLCAG00010021386) #34	ENSLCAG00010021364	ADAMTS7 (ENSLCAG00010021162)
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p
Tongue sole	MODERN SPECIES	15	fgf7 (ENSCSEG00000012750)	dtwd1 (ENSCSEG00000012745)	ENSCSEG00000012721	spata5l1 (ENSCSEG00000012712)	zgc:153317 (ENSCSEG00000012700)	slc30a4 (ENSCSEG00000012686)	bloc1s6 (ENSCSEG00000012676)	mibp2 (ENSCSEG00000012672)	HAPLN3 (ENSCSEG00000012667)	mfge8a (ENSCSEG00000012660)	abhd2a (ENSCSEG00000012650)	ENSCSEG00000012628	slc39a1 (ENSCSEG00000012617)	tmem208 (ENSCSEG00000012613)	SMAD6 (ENSCSEG00000012602) #21	SMAD3 (ENSCSEG00000012585) #22	map2k5 (ENSCSEG00000012573) #27	ccnd1 (ENSCSEG00000012564)	vstm2b (ENSCSEG00000012557)	scg3 (ENSCSEG00000012546)	lysmd2 (ENSCSEG00000012539)	tmod2 (ENSCSEG00000012523)	leo1 (ENSCSEG00000012502)	mapk6 (ENSCSEG00000012488)	ENSCSEG00000012481	USP8 (ENSCSEG00000012449)	hdc (ENSCSEG00000010006)	slc27a2a (ENSCSEG00000009981)	gatm (ENSCSEG00000009953)	pde8a (ENSCSEG00000009892)	ENSCSEG00000009860
Turbot	MODERN SPECIES	17	FGF7 (ENSSMAG00000021287)	DTWD1 (ENSSMAG00000021289)	ENSSMAG00000021288	spata5l1 (ENSSMAG00000021290)	zgc:153317 (ENSSMAG00000029975)	slc30a4 (ENSSMAG00000021292)	bloc1s6 (ENSSMAG00000021293)	mibp2 (ENSSMAG00000021294)	HAPLN3 (ENSSMAG00000030247)	MFGE8 (ENSSMAG00000021296)	abhd2a (ENSSMAG00000021297)	ENSSMAG00000021298	slc39a1 (ENSSMAG00000034740)	ENSSMAG00000021300	smad6a (ENSSMAG00000021301) #21	ENSSMAG00000021302 #22	map2k5 (ENSSMAG00000021303) #27	skor1a (ENSSMAG00000017446) #28	PIAS1 (ENSSMAG00000021305) #29	ENSSMAG00000021306	ENSSMAG00000021307	UACA (ENSSMAG00000021308)	ENSSMAG00000021309	KIF23 (ENSSMAG00000021310)	ENSSMAG00000021311	grk1a (ENSSMAG00000021312)	ENSSMAG00000021313	pros1 (ENSSMAG00000021314)	ENSSMAG00000021316	ENSSMAG00000021317	ENSSMAG00000021318
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Ballan wrasse	MODERN SPECIES	104	GRAMD2A (ENSLBEG00000018218)	znf609b (ENSLBEG00000018286)	trip4 (ENSLBEG00000018354)	chrna7a (ENSLBEG00000018486)	ENSLBEG00000018521 #31	calml4a (ENSLBEG00000018565) #30	ADAMTS7 (ENSLBEG00000018586)	ENSLBEG00000018644	itga11a (ENSLBEG00000018674) #34	CORO2B (ENSLBEG00000018741) #35	anp32a (ENSLBEG00000018773) #36	rlbp1a (ENSLBEG00000018790)	slc39a1 (ENSLBEG00000018824)	tmem208 (ENSLBEG00000018834)	smad6a (ENSLBEG00000018875) #21	SMAD3 (ENSLBEG00000018909) #22	map2k5 (ENSLBEG00000018972) #27	skor1a (ENSLBEG00000019091) #28	PIAS1 (ENSLBEG00000019115) #29	ENSLBEG00000019169	ENSLBEG00000019201
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Large yellow croaker	MODERN SPECIES	480	fgf7 (ENSLCRG00005000389)	dtwd1 (ENSLCRG00005000391)	ENSLCRG00005000460	spata5l1 (ENSLCRG00005005473)	zgc:153317 (ENSLCRG00005005477)	slc30a4 (ENSLCRG00005005479)	bloc1s6 (ENSLCRG00005005480)	mibp2 (ENSLCRG00005005482)	HAPLN3 (ENSLCRG00005005483)	mfge8a (ENSLCRG00005005484)	abhd2a (ENSLCRG00005005487)	ENSLCRG00005005803	slc39a1 (ENSLCRG00005005804)	tmem208 (ENSLCRG00005005805)	smad6a (ENSLCRG00005005807) #21	SMAD3 (ENSLCRG00005005810) #22	map2k5 (ENSLCRG00005005909) #27	skor1a (ENSLCRG00005006374) #28	PIAS1 (ENSLCRG00005006385) #29	ENSLCRG00005006537	ENSLCRG00005006538	UACA (ENSLCRG00005006539)	TLE3 (ENSLCRG00005006727)	kif23 (ENSLCRG00005007885)	paqr5a (ENSLCRG00005008119)	glceb (ENSLCRG00005008122)	anp32a (ENSLCRG00005008124) #36	CORO2B (ENSLCRG00005008131) #35	itga11a (ENSLCRG00005008190) #34	ENSLCRG00005008193	ADAMTS7 (ENSLCRG00005008214)
European seabass	MODERN SPECIES	18	COPS2 (ENSDLAG00005011741)	FGF7 (ENSDLAG00005011794)	dtwd1 (ENSDLAG00005011800)	spata5l1 (ENSDLAG00005012044)	zgc:153317 (ENSDLAG00005012056)	ENSDLAG00005011812	bloc1s6 (ENSDLAG00005029813)	mibp2 (ENSDLAG00005012080)	HAPLN3 (ENSDLAG00005012094)	MFGE8 (ENSDLAG00005012122)	abhd2a (ENSDLAG00005012210)	ENSDLAG00005032428	slc39a1 (ENSDLAG00005012303)	ENSDLAG00005028664	smad6a (ENSDLAG00005012334) #21	ENSDLAG00005012347 #22	map2k5 (ENSDLAG00005012424) #27	skor1a (ENSDLAG00005012682) #28	PIAS1 (ENSDLAG00005012766) #29	ENSDLAG00005013277	ENSDLAG00005013288	UACA (ENSDLAG00005013331)	TLE3 (ENSDLAG00005013590)	KIF23 (ENSDLAG00005014683)	paqr5a (ENSDLAG00005016531)	glceb (ENSDLAG00005016598)	anp32a (ENSDLAG00005031356) #36	CORO2B (ENSDLAG00005034094) #35	itga11a (ENSDLAG00005016823) #34	ENSDLAG00005017414	ENSDLAG00005017441
Gilthead seabream	MODERN SPECIES	18	dtwd1 (ENSSAUG00010002543)	ENSSAUG00010002030	spata5l1 (ENSSAUG00010001992)	zgc:153317 (ENSSAUG00010001990)	slc30a4 (ENSSAUG00010001988)	bloc1s6 (ENSSAUG00010001982)	mibp2 (ENSSAUG00010001974)	HAPLN3 (ENSSAUG00010001971)	mfge8a (ENSSAUG00010001355)	rlbp1a (ENSSAUG00010001297)	abhd2a (ENSSAUG00010001289)	ENSSAUG00010001286	slc39a1 (ENSSAUG00010001284)	tmem208 (ENSSAUG00010001282)	smad6a (ENSSAUG00010001276) #21	SMAD3 (ENSSAUG00010001244) #22	ENSSAUG00010001237	ENSSAUG00010001233	map2k5 (ENSSAUG00010001213) #27	skor1a (ENSSAUG00010001195) #28	PIAS1 (ENSSAUG00010001185) #29	ENSSAUG00010001179	ENSSAUG00010001176	UACA (ENSSAUG00010001078)	TLE3 (ENSSAUG00010000571)	ENSSAUG00010000433	kif23 (ENSSAUG00010000357)	paqr5a (ENSSAUG00010000298)	glceb (ENSSAUG00010000286)	ENSSAUG00010000277	ENSSAUG00010000274
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Pike perch	MODERN SPECIES	83	pm20d1.2 (ENSSLUG00000022301)	ENSSLUG00000022233	ENSSLUG00000021873	ENSSLUG00000020413	NFASC (ENSSLUG00000020174)	ENSSLUG00000020163	slc16a7 (ENSSLUG00000020153)	syt9b (ENSSLUG00000020146)	HAPLN3 (ENSSLUG00000020090)	mfge8a (ENSSLUG00000019421)	abhd2a (ENSSLUG00000019221)	rlbp1a (ENSSLUG00000019193)	slc39a1 (ENSSLUG00000019185)	tmem208 (ENSSLUG00000019177)	smad6a (ENSSLUG00000019173) #21	SMAD3 (ENSSLUG00000019159) #22	map2k5 (ENSSLUG00000019102) #27	skor1a (ENSSLUG00000019082) #28	PIAS1 (ENSSLUG00000018888) #29	ENSSLUG00000018849	ENSSLUG00000018706	UACA (ENSSLUG00000018662)	TLE3 (ENSSLUG00000018010)
Channel bull blenny	MODERN SPECIES	17	fgf7 (ENSCGOG00000013386)	dtwd1 (ENSCGOG00000013385)	ENSCGOG00000012050	spata5l1 (ENSCGOG00000012018)	zgc:153317 (ENSCGOG00000012017)	slc30a4 (ENSCGOG00000011952)	bloc1s6 (ENSCGOG00000011946)	mibp2 (ENSCGOG00000011896)	HAPLN3 (ENSCGOG00000011875)	mfge8a (ENSCGOG00000011837)	abhd2a (ENSCGOG00000011430)	rlbp1a (ENSCGOG00000011827)	slc39a1 (ENSCGOG00000011417)	tmem208 (ENSCGOG00000011411)	smad6a (ENSCGOG00000011407) #21	SMAD3 (ENSCGOG00000011028) #22	map2k5 (ENSCGOG00000011019) #27	skor1a (ENSCGOG00000011015) #28	PIAS1 (ENSCGOG00000010586) #29	ENSCGOG00000010561	ENSCGOG00000010458	UACA (ENSCGOG00000010448)	TLE3 (ENSCGOG00000004700)	kif23 (ENSCGOG00000003399)	paqr5a (ENSCGOG00000003316)	glceb (ENSCGOG00000003305)	anp32a (ENSCGOG00000003301) #36	CORO2B (ENSCGOG00000003143) #35	itga11a (ENSCGOG00000003093) #34	ENSCGOG00000003088	ADAMTS7 (ENSCGOG00000002764)
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Lumpfish	MODERN SPECIES	18	fgf7 (ENSCLMG00005020325)	dtwd1 (ENSCLMG00005020326)	ENSCLMG00005020328	spata5l1 (ENSCLMG00005020375)	zgc:153317 (ENSCLMG00005020377)	slc30a4 (ENSCLMG00005020379)	bloc1s6 (ENSCLMG00005020380)	mibp2 (ENSCLMG00005020381)	HAPLN3 (ENSCLMG00005020382)	MFGE8 (ENSCLMG00005020383)	abhd2a (ENSCLMG00005020764)	rlbp1a (ENSCLMG00005020766)	slc39a1 (ENSCLMG00005020767)	tmem208 (ENSCLMG00005020768)	smad6a (ENSCLMG00005020770) #21	SMAD3 (ENSCLMG00005020772) #22	map2k5 (ENSCLMG00005020775) #27	skor1a (ENSCLMG00005020777) #28	PIAS1 (ENSCLMG00005020781) #29	ENSCLMG00005020791	ENSCLMG00005020792	UACA (ENSCLMG00005020794)	TLE3 (ENSCLMG00005020805)	KIF23 (ENSCLMG00005021061)	paqr5a (ENSCLMG00005021317)	glceb (ENSCLMG00005021318)	anp32a (ENSCLMG00005021319) #36	CORO2B (ENSCLMG00005021320) #35	itga11a (ENSCLMG00005021322) #34	ENSCLMG00005021328	ADAMTS7 (ENSCLMG00005021336)
Stickleback	MODERN SPECIES	1	fgf7 (ENSGACG00000016807)	dtwd1 (ENSGACG00000016809)	ENSGACG00000016813	spata5l1 (ENSGACG00000016834)	slc30a4 (ENSGACG00000016836)	bloc1s6 (ENSGACG00000016843)	mibp2 (ENSGACG00000016845)	HAPLN3 (ENSGACG00000016853)	mfge8a (ENSGACG00000016860)	abhd2a (ENSGACG00000016866)	rlbp1a (ENSGACG00000016871)	ENSGACG00000016872	slc39a1 (ENSGACG00000016873)	tmem208 (ENSGACG00000016875)	smad6a (ENSGACG00000016878) #21	SMAD3 (ENSGACG00000016882) #22	map2k5 (ENSGACG00000016884) #27	skor1a (ENSGACG00000016891) #28	PIAS1 (ENSGACG00000016894) #29	ENSGACG00000016895	ENSGACG00000016897	UACA (ENSGACG00000016909)	TLE3 (ENSGACG00000016913)	kif23 (ENSGACG00000016920)	paqr5a (ENSGACG00000016926)	glceb (ENSGACG00000016931)	anp32a (ENSGACG00000016932) #36	CORO2B (ENSGACG00000016936) #35	itga11a (ENSGACG00000016944) #34	ENSGACG00000016952	ADAMTS7 (ENSGACG00000016953)
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Tetraodon	MODERN SPECIES	20	SECISBP2L (ENSTNIG00000009531)	cops2 (ENSTNIG00000009532)	FGF7 (ENSTNIG00000009533)	dtwd1 (ENSTNIG00000009534)	ENSTNIG00000009535	spata5l1 (ENSTNIG00000009536)	slc30a4 (ENSTNIG00000009537)	bloc1s6 (ENSTNIG00000009538)	mibp2 (ENSTNIG00000009539)	HAPLN3 (ENSTNIG00000009540)	mfge8a (ENSTNIG00000009541)	abhd2a (ENSTNIG00000009542)	rlbp1a (ENSTNIG00000009543)	slc39a1 (ENSTNIG00000009544)	smad6a (ENSTNIG00000009545) #21	SMAD3 (ENSTNIG00000009546) #22	map2k5 (ENSTNIG00000009547) #27	skor1a (ENSTNIG00000009548) #28	PIAS1 (ENSTNIG00000009549) #29	ENSTNIG00000009550	ENSTNIG00000009551	UACA (ENSTNIG00000009552)	TLE3 (ENSTNIG00000009554)	kif23 (ENSTNIG00000009555)	paqr5a (ENSTNIG00000009556)	glceb (ENSTNIG00000009557)	anp32a (ENSTNIG00000009558) #36	CORO2B (ENSTNIG00000009559) #35	itga11a (ENSTNIG00000009560) #34	ENSTNIG00000009561	ADAMTS7 (ENSTNIG00000009562)
Fugu	MODERN SPECIES	4	spata5l1 (ENSTRUG00000016910)	zgc:153317 (ENSTRUG00000016908)	slc30a4 (ENSTRUG00000019868)	bloc1s6 (ENSTRUG00000021749)	mibp2 (ENSTRUG00000016897)	HAPLN3 (ENSTRUG00000016895)	mfge8a (ENSTRUG00000016888)	smad6a (ENSTRUG00000032173) #21	abhd2a (ENSTRUG00000016883)	rlbp1a (ENSTRUG00000016880)	slc39a1 (ENSTRUG00000016874)	tmem208 (ENSTRUG00000026186)	tmem208 (ENSTRUG00000016873)	ENSTRUG00000029807	smad6a (ENSTRUG00000022333) #21	SMAD3 (ENSTRUG00000002512) #22	map2k5 (ENSTRUG00000016851) #27	skor1a (ENSTRUG00000016849) #28	PIAS1 (ENSTRUG00000016843) #29	ENSTRUG00000016840	ENSTRUG00000016836	UACA (ENSTRUG00000016819)	TLE3 (ENSTRUG00000016796)	kif23 (ENSTRUG00000016789)	paqr5a (ENSTRUG00000016784)	glceb (ENSTRUG00000024535)	anp32a (ENSTRUG00000028503) #36	CORO2B (ENSTRUG00000016762) #35	itga11a (ENSTRUG00000016742) #34	ENSTRUG00000016739	ADAMTS7 (ENSTRUG00000016709)
Tiger tail seahorse	MODERN SPECIES	136	CPSF7 (ENSHCOG00000008694)	polr2l (ENSHCOG00000008730)	ENSHCOG00000008733	DAGLA (ENSHCOG00000008783)	ext2 (ENSHCOG00000008840)	ALX4 (ENSHCOG00000008862)	caprin1a (ENSHCOG00000008874)	nucb2a (ENSHCOG00000008922)	mfge8a (ENSHCOG00000008936)	abhd2a (ENSHCOG00000008959)	abhd2a (ENSHCOG00000009102)	ENSHCOG00000009121	slc39a1 (ENSHCOG00000009130)	tmem208 (ENSHCOG00000009151)	smad6a (ENSHCOG00000009157) #21	SMAD3 (ENSHCOG00000009185) #22	map2k5 (ENSHCOG00000009231) #27	skor1a (ENSHCOG00000009245) #28	PIAS1 (ENSHCOG00000009718) #29	ENSHCOG00000000302	UACA (ENSHCOG00000009850)	TLE3 (ENSHCOG00000009901)	kif23 (ENSHCOG00000009985)	paqr5a (ENSHCOG00000010220)	glceb (ENSHCOG00000010239)	anp32a (ENSHCOG00000010440) #36	CORO2B (ENSHCOG00000010485) #35	itga11a (ENSHCOG00000010557) #34
Pinecone sodierfish	MODERN SPECIES	17	shcbp1 (ENSMMDG00005011760)	hrh3 (ENSMMDG00005011947)	vps35 (ENSMMDG00005012005)	orc6 (ENSMMDG00005012351)	mylk3 (ENSMMDG00005012352)	zgc:92818 (ENSMMDG00005012354)	lrp3 (ENSMMDG00005012355)	slc7a10a (ENSMMDG00005012358)	rhpn2 (ENSMMDG00005012374)	cep89 (ENSMMDG00005013375)	zgc:165481 (ENSMMDG00005013378)	ABCC12 (ENSMMDG00005013387)	tmem208 (ENSMMDG00005013549)	smad6a (ENSMMDG00005013552) #21	ENSMMDG00005013629	SMAD3 (ENSMMDG00005013632) #22	map2k5 (ENSMMDG00005013634) #27	skor1a (ENSMMDG00005013640) #28	PIAS1 (ENSMMDG00005013642) #29	ENSMMDG00005013674	ENSMMDG00005013682	UACA (ENSMMDG00005014056)	TLE3 (ENSMMDG00005014073)	kif23 (ENSMMDG00005017427)	paqr5a (ENSMMDG00005017824)	glceb (ENSMMDG00005018113)	anp32a (ENSMMDG00005018115) #36	CORO2B (ENSMMDG00005018117) #35	itga11a (ENSMMDG00005018120) #34	ENSMMDG00005018123	ADAMTS7 (ENSMMDG00005018126)
Cod	MODERN SPECIES	5	ENSGMOG00000022836	ENSGMOG00000033955	ENSGMOG00000017408	ENSGMOG00000017430	CTSH (ENSGMOG00000017462)	ENSGMOG00000017486	ENSGMOG00000017523	ENSGMOG00000017537	ENSGMOG00000034247	ENSGMOG00000017568	ENSGMOG00000001528	ENSGMOG00000001246	ENSGMOG00000001268	ENSGMOG00000001293	smad6a (ENSGMOG00000032620) #21	ENSGMOG00000008364 #22	map2k5 (ENSGMOG00000001328) #27	skor1a (ENSGMOG00000035936) #28	PIAS1 (ENSGMOG00000001390) #29	ENSGMOG00000001426	ENSGMOG00000001435	UACA (ENSGMOG00000001457)	tle3a (ENSGMOG00000001493)	ENSGMOG00000031541	KIF23 (ENSGMOG00000015631)	paqr5a (ENSGMOG00000015675)	glceb (ENSGMOG00000015696)	ENSGMOG00000015718	CORO2B (ENSGMOG00000015733) #35	itga11a (ENSGMOG00000015758) #34	ENSGMOG00000020315
Protacanthopterygii	ANCESTRAL SPECIES	152															ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000165054.A.c	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000166194.a.a	ENSGT00940000166194.a.b	ENSGT00390000006196.k.b	ENSGT00390000006196.l	ENSGT00940000154860.a.a.d	ENSGT00940000157405.c.b	ENSGT00390000001680	ENSGT00940000155379.g.a	ENSGT00940000154234.a.d	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.h.a #22	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a	ENSGT00950000182965.a.b.b.b	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d	ENSGT00940000155837.p.c.a	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000166219.g.a	ENSGT00940000160121.c	ENSGT00940000157633	ENSGT00940000153272.a.b.c.j	ENSGT00390000015016.c	ENSGT00940000155352.eb.a.b	ENSGT00940000158980.tb	ENSGT00940000154963.h	ENSGT00390000014757.w.a	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a.c.b #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a.h	ENSGT00950000182965.a.b.a.a.g	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d	ENSGT00940000155837.p.c.a	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	45	ENSGT00940000160121.c	ENSGT00940000157633	ENSGT00390000015016.c	ENSGT00940000155352.eb.a.b	ENSGT00940000158980.tb	ENSGT00940000154963.h	ENSGT00390000014757.w.a	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n.e	ENSGT00940000158146.a.c.a.b #21	ENSGT00940000153499.b.b.d.a.a.d #22	ENSGT00940000158146.a.c.b #21	ENSGT00940000153499.b.b.d.a.a.c #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a.e.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.b #29	ENSGT01030000234518.B.a.b.a.b.d	ENSGT00950000182965.a.b.a.a.h
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000038776	ENSSSAG00000045767	ENSSSAG00000057376	chst1 (ENSSSAG00000095739)	ENSSSAG00000004788	ENSSSAG00000109804	ENSSSAG00000020893	ENSSSAG00000019260	ENSSSAG00000113219	ENSSSAG00000086111	ENSSSAG00000106407	ENSSSAG00000116546	ENSSSAG00000097937	ENSSSAG00000024743	smad6a (ENSSSAG00000103532) #21	ENSSSAG00000005798 #22	map2k5 (ENSSSAG00000088189) #27	ENSSSAG00000118360	skor1a (ENSSSAG00000010641) #28	PIAS1 (ENSSSAG00000101551) #29	ENSSSAG00000091284	morf4l1 (ENSSSAG00000005810)	ENSSSAG00000040259	ENSSSAG00000097865	TLE3 (ENSSSAG00000074519)	ENSSSAG00000113764	KIF23 (ENSSSAG00000120697)	PAQR5 (ENSSSAG00000113393)	glceb (ENSSSAG00000111912)	anp32a (ENSSSAG00000043489) #36	CORO2B (ENSSSAG00000065753) #35
Atlantic salmon	MODERN SPECIES	18	ENSSSAG00000076731	ttc17 (ENSSSAG00000040540)	hsd17b12b (ENSSSAG00000040461)	ENSSSAG00000040431	ENSSSAG00000091855	apip (ENSSSAG00000042232)	slc1a2a (ENSSSAG00000009050)	ENSSSAG00000062807	CRY2 (ENSSSAG00000069768)	ENSSSAG00000112050	ENSSSAG00000114794	ENSSSAG00000120164	ENSSSAG00000085173	chst1 (ENSSSAG00000004800)	smad6a (ENSSSAG00000088892) #21	ENSSSAG00000121852 #22	map2k5 (ENSSSAG00000089565) #27	skor1a (ENSSSAG00000065500) #28	PIAS1 (ENSSSAG00000085914) #29	ENSSSAG00000040397	mo4l1 (ENSSSAG00000081184)	ENSSSAG00000096373	ENSSSAG00000113826	TLE3 (ENSSSAG00000084287)	ENSSSAG00000076630	KIF23 (ENSSSAG00000095510)	PAQR5 (ENSSSAG00000055316)	glceb (ENSSSAG00000111347)	anp32a (ENSSSAG00000113550) #36	CORO2B (ENSSSAG00000120941) #35	itga11a (ENSSSAG00000082935) #34
Salmo	ANCESTRAL SPECIES	45	ENSGT00940000155323.a.h	ENSGT00940000166219.g.a	ENSGT00940000160121.c	ENSGT00940000157633	ENSGT00390000015016.c	ENSGT00940000155352.eb.a.b	ENSGT00940000158980.tb	ENSGT00940000154963.h	ENSGT00390000014757.w.a	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n.e	ENSGT00940000158146.a.c.a.b #21	ENSGT00940000153499.b.b.d.a.a.d #22	ENSGT00940000158146.a.c.b #21	ENSGT00940000153499.b.b.d.a.a.c #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a.e.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.b #29	ENSGT01030000234518.B.a.b.a.b.d	ENSGT00950000182965.a.b.a.a.h
River trout	MODERN SPECIES	21	ttc17 (ENSSTUG00000012270)	hsd17b12b (ENSSTUG00000013517)	ENSSTUG00000013536	ENSSTUG00000013540	LRRC4C (ENSSTUG00000013543)	apip (ENSSTUG00000013552)	slc1a2a (ENSSTUG00000013581)	PAMR1 (ENSSTUG00000013601)	CRY2 (ENSSTUG00000013635)	slc35c1 (ENSSTUG00000013839)	CHST1 (ENSSTUG00000013841)	ENSSTUG00000013845	ENSSTUG00000013853	ENSSTUG00000013858	smad6a (ENSSTUG00000013876) #21	SMAD3 (ENSSTUG00000013882) #22	map2k5 (ENSSTUG00000013921) #27	skor1a (ENSSTUG00000013956) #28	TLE3 (ENSSTUG00000014027)	ENSSTUG00000016054	kif23 (ENSSTUG00000016129)	PAQR5 (ENSSTUG00000018329)	glceb (ENSSTUG00000018363)	ENSSTUG00000018392	anp32a (ENSSTUG00000018395) #36	CORO2B (ENSSTUG00000018417) #35	itga11a (ENSSTUG00000018657) #34	ENSSTUG00000018937	ENSSTUG00000018943 #31	calml4a (ENSSTUG00000018951) #30	ENSSTUG00000018967
Atlantic salmon	MODERN SPECIES	84																ENSSSAG00000101760 #22
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000160588.a	ENSGT00940000162677.qc.b	ENSGT00940000160588.b	ENSGT00940000155426	ENSGT00940000166194.a.a	ENSGT00390000006196.l	ENSGT00940000154860.a.a.d	ENSGT00990000209089.b	ENSGT00940000157405.c.b	ENSGT00390000001680	ENSGT00940000155379.g.a	ENSGT00940000154234.a.d	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a.c.b #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a.g.b #28	ENSGT00950000182965.a.b.b.b	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a.d	ENSGT00940000155837.p.d	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00940000154725.j.e.a	ENSGT00940000157859.a.a.d #30	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.p.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000040589	trpm5 (ENSOMYG00000057858)	ENSOMYG00000040541	ENSOMYG00000065809	ttc17 (ENSOMYG00000066781)	hsd17b12b (ENSOMYG00000054352)	ENSOMYG00000002918	ENSOMYG00000030570	ENSOMYG00000061757	apip (ENSOMYG00000071183)	slc1a2a (ENSOMYG00000002858)	ENSOMYG00000069110	ENSOMYG00000002832	ENSOMYG00000068058	smad6a (ENSOMYG00000074703) #21	ENSOMYG00000002807 #22	map2k5 (ENSOMYG00000064462) #27	skor1a (ENSOMYG00000057349) #28	ENSOMYG00000077338	PIAS1 (ENSOMYG00000070434) #29	ENSOMYG00000002685	morf4l1 (ENSOMYG00000002673)	ENSOMYG00000070845	ENSOMYG00000002551	TLE3 (ENSOMYG00000051984)	ENSOMYG00000054756	KIF23 (ENSOMYG00000002448)	PAQR5 (ENSOMYG00000002128)	glceb (ENSOMYG00000021963)	ENSOMYG00000073466	anp32a (ENSOMYG00000039157) #36
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000040562	ENSOMYG00000055804	ENSOMYG00000040584	ENSOMYG00000040503	ttc17 (ENSOMYG00000040239)	hsd17b12b (ENSOMYG00000065304)	ENSOMYG00000040103	ENSOMYG00000055763	apip (ENSOMYG00000072316)	slc1a2a (ENSOMYG00000051777)	ENSOMYG00000024704	ENSOMYG00000057959	ENSOMYG00000056192	ENSOMYG00000064779	smad6a (ENSOMYG00000050910) #21	smad3 (ENSOMYG00000064926) #22	map2k5 (ENSOMYG00000065445) #27	skor1a (ENSOMYG00000040079) #28	ENSOMYG00000076342	PIAS1 (ENSOMYG00000049756) #29	ENSOMYG00000064318	mo4l1 (ENSOMYG00000049978)	UACA (ENSOMYG00000057286)	TLE3 (ENSOMYG00000048144)	ENSOMYG00000069520	kif23 (ENSOMYG00000039505)	PAQR5 (ENSOMYG00000034607)	glceb (ENSOMYG00000034637)	anp32a (ENSOMYG00000037247) #36	CORO2B (ENSOMYG00000075332) #35	ENSOMYG00000058683
Oncorhynchus_a	ANCESTRAL SPECIES	111															ENSGT00940000158146.a.c.b #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a.g.a #28	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a.h	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a.c	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00940000154725.j.e.a	ENSGT00940000157859.a.a.d #30
Coho salmon	MODERN SPECIES	32	TRAF6 (ENSOKIG00005034012)	trpm5 (ENSOKIG00005033333)	ENSOKIG00005033243	ENSOKIG00005033109	lingo1b (ENSOKIG00005033071)	ENSOKIG00005031839	CHST1 (ENSOKIG00005031722)	slc35c1 (ENSOKIG00005031717)	PAMR1 (ENSOKIG00005031706)	slc1a2a (ENSOKIG00005031245)	apip (ENSOKIG00005031096)	LRRC4C (ENSOKIG00005031076)	ENSOKIG00005031071	smad6a (ENSOKIG00005031063) #21	ENSOKIG00005031026	SMAD3 (ENSOKIG00005030867) #22	MAP2K5 (ENSOKIG00005030818) #27	skor1a (ENSOKIG00005030605) #28	ENSOKIG00005030513	morf4l1 (ENSOKIG00005030482)	UACA (ENSOKIG00005030214)	ENSOKIG00005030169	ENSOKIG00005030159	ENSOKIG00005030149	TLE3 (ENSOKIG00005027326)	ENSOKIG00005027053	kif23 (ENSOKIG00005024942)	paqr5a (ENSOKIG00005024740)	glceb (ENSOKIG00005024694)	anp32a (ENSOKIG00005024657) #36	CORO2B (ENSOKIG00005023743) #35
Northern pike	MODERN SPECIES	1	trpm5 (ENSELUG00000020566)	traf6 (ENSELUG00000020636)	ENSELUG00000020662	ENSELUG00000030198	ttc17 (ENSELUG00000020818)	ENSELUG00000020845	ENSELUG00000020858	LRRC4C (ENSELUG00000031309)	apip (ENSELUG00000020924)	slc1a2a (ENSELUG00000000921)	PAMR1 (ENSELUG00000020976)	CRY2 (ENSELUG00000021019)	slc35c1 (ENSELUG00000021039)	CHST1 (ENSELUG00000021051)	smad6a (ENSELUG00000021062) #21	SMAD3 (ENSELUG00000021087) #22	map2k5 (ENSELUG00000021260) #27	skor1a (ENSELUG00000021269) #28	PIAS1 (ENSELUG00000021305) #29	ENSELUG00000022543	ENSELUG00000021372	UACA (ENSELUG00000021409)	tle3a (ENSELUG00000021491)	ENSELUG00000021509	kif23 (ENSELUG00000021675)	paqr5b (ENSELUG00000021700)	ENSELUG00000021715	rbpms2b (ENSELUG00000021784)	cpeb1b (ENSELUG00000021835)	ENSELUG00000021867	csnk1g1 (ENSELUG00000021940)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.a.a #22
Clupeiformes	ANCESTRAL SPECIES	38	ENSGT00940000158372	ENSGT00940000155328	ENSGT00390000005270	ENSGT00940000159421	ENSGT00390000005939.b	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT01030000234534.B.a.b.a.b	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.i.b	ENSGT00940000158844	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00530000063760.a	ENSGT00940000159506	ENSGT00940000153289.b
Atlantic herring	MODERN SPECIES	22	TUB (ENSCHAG00000025022)	rras2 (ENSCHAG00000025016)	copb1 (ENSCHAG00000024999)	ZNF821 (ENSCHAG00000024989)	ATXN1L (ENSCHAG00000024986)	nr1h3 (ENSCHAG00000024937)	MADD (ENSCHAG00000024588)	bbox1 (ENSCHAG00000024557)	fibinb (ENSCHAG00000024552)	ENSCHAG00000024549	dis3l (ENSCHAG00000024525) #14	tipin (ENSCHAG00000024505) #15	lctla (ENSCHAG00000024470) #20	crybgx (ENSCHAG00000024459)	smad6a (ENSCHAG00000024456) #21	SMAD3 (ENSCHAG00000024368) #22	map2k5 (ENSCHAG00000024351) #27	PIAS1 (ENSCHAG00000024164) #29	ENSCHAG00000024151	UACA (ENSCHAG00000024120)	TLE3 (ENSCHAG00000023284)	paqr5a (ENSCHAG00000023114)	glceb (ENSCHAG00000023095)	anp32a (ENSCHAG00000023079) #36	CORO2B (ENSCHAG00000022923) #35	itga11a (ENSCHAG00000022724) #34	ENSCHAG00000022701	PCSK6 (ENSCHAG00000021433)	snrpa1 (ENSCHAG00000021391)	aldh1a3 (ENSCHAG00000020992)	LRRK1 (ENSCHAG00000020219)
Clupeocephala	ANCESTRAL SPECIES	69								ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047	ENSGT00940000157760.g.b	ENSGT00940000165330	ENSGT00440000033504.A
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047	ENSGT00940000157760.g.b	ENSGT00940000165330	ENSGT00440000033504.A
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.l	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Clown anemonefish	MODERN SPECIES	1348	ENSAOCG00000021901	atxn10 (ENSAOCG00000021916)	ENSAOCG00000021997	ENSAOCG00000022029	AKR1D1 (ENSAOCG00000022037)	KDM5A (ENSAOCG00000022150)	ENSAOCG00000022343	USP15 (ENSAOCG00000022427)	ENSAOCG00000022525 ##13	map2k1 (ENSAOCG00000022590) #16	rpl4 (ENSAOCG00000022562) #18	zwilch (ENSAOCG00000003631) #19	LCTL (ENSAOCG00000003648) #20	snapc5 (ENSAOCG00000003658) #17	smad6b (ENSAOCG00000003669) #21	smad3b (ENSAOCG00000000100) #22	aagab (ENSAOCG00000003690) #23	iqch (ENSAOCG00000003725) #25	zgc:162898 (ENSAOCG00000003743) #26	skor1b (ENSAOCG00000003749) #28	PIAS1 (ENSAOCG00000003771) #29	morf4l1 (ENSAOCG00000003793)	ENSAOCG00000003805	TLE3 (ENSAOCG00000003819)	kif23 (ENSAOCG00000003882)
Orange clownfish	MODERN SPECIES	18	arih1 (ENSAPEG00000020341)	ENSAPEG00000020412	ppcdc (ENSAPEG00000020454)	hacd3 (ENSAPEG00000020472) #8	ints14 (ENSAPEG00000020521) #9	SLC24A1 (ENSAPEG00000020557) #10	SLC24A1 (ENSAPEG00000020576) #10	ENSAPEG00000020590 ##11	ENSAPEG00000020674 ##13	map2k1 (ENSAPEG00000020723) #16	rpl4 (ENSAPEG00000020765) #18	zwilch (ENSAPEG00000020879) #19	LCTL (ENSAPEG00000021009) #20	snapc5 (ENSAPEG00000021082) #17	smad6b (ENSAPEG00000021097) #21	smad3b (ENSAPEG00000021121) #22	aagab (ENSAPEG00000021154) #23	iqch (ENSAPEG00000021177) #25	zgc:162898 (ENSAPEG00000021209) #26	skor1b (ENSAPEG00000021226) #28	PIAS1 (ENSAPEG00000021254) #29	morf4l1 (ENSAPEG00000021329)	TLE3 (ENSAPEG00000021401)	kif23 (ENSAPEG00000021465)	ddb2 (ENSAPEG00000021600)	ENSAPEG00000021620	kbtbd4 (ENSAPEG00000021632)	rapsn (ENSAPEG00000021656)	ENSAPEG00000021685	ENSAPEG00000021695	ighmbp2 (ENSAPEG00000021713)
Spiny chromis	MODERN SPECIES	6	arih1 (ENSAPOG00000007442)	ENSAPOG00000007458	ppcdc (ENSAPOG00000007489)	hacd3 (ENSAPOG00000007552) #8	ints14 (ENSAPOG00000007621) #9	SLC24A1 (ENSAPOG00000007942) #10	SLC24A1 (ENSAPOG00000008141) #10	ENSAPOG00000008269 ##11	ENSAPOG00000008421 ##13	map2k1 (ENSAPOG00000008515) #16	rpl4 (ENSAPOG00000008471) #18	zwilch (ENSAPOG00000008541) #19	LCTL (ENSAPOG00000008616) #20	snapc5 (ENSAPOG00000008638) #17	smad6b (ENSAPOG00000008675) #21	smad3b (ENSAPOG00000008731) #22	aagab (ENSAPOG00000008748) #23	iqch (ENSAPOG00000008805) #25	zgc:162898 (ENSAPOG00000008823) #26	skor1b (ENSAPOG00000008831) #28	PIAS1 (ENSAPOG00000008862) #29	morf4l1 (ENSAPOG00000008936)	TLE3 (ENSAPOG00000009026)	kif23 (ENSAPOG00000009173)	ddb2 (ENSAPOG00000009264)	kbtbd4 (ENSAPOG00000009282)	rapsn (ENSAPOG00000009316)	ENSAPOG00000009326	ighmbp2 (ENSAPOG00000009399)	chid1 (ENSAPOG00000009458)	gatd1 (ENSAPOG00000009447)
Bicolor damselfish	MODERN SPECIES	317	arih1 (ENSSPAG00000018619)	ENSSPAG00000018683	ppcdc (ENSSPAG00000018714)	hacd3 (ENSSPAG00000018731) #8	ints14 (ENSSPAG00000018803) #9	SLC24A1 (ENSSPAG00000018853) #10	SLC24A1 (ENSSPAG00000018871) #10	ENSSPAG00000018896 ##11	ENSSPAG00000018936 ##13	map2k1 (ENSSPAG00000018984) #16	rpl4 (ENSSPAG00000019006) #18	zwilch (ENSSPAG00000019063) #19	LCTL (ENSSPAG00000019086) #20	snapc5 (ENSSPAG00000019113) #17	smad6b (ENSSPAG00000019122) #21	smad3b (ENSSPAG00000019142) #22	aagab (ENSSPAG00000019178) #23	iqch (ENSSPAG00000019195) #25	zgc:162898 (ENSSPAG00000019226) #26	skor1b (ENSSPAG00000019235) #28
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454.l	ENSGT00510000048454.k.a
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.a #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454.l	ENSGT00930000151035.a
Burton s mouthbrooder	MODERN SPECIES	368	arih1 (ENSHBUG00000013587)	ENSHBUG00000013489	ppcdc (ENSHBUG00000013452)	hacd3 (ENSHBUG00000013444) #8	ints14 (ENSHBUG00000013409) #9	SLC24A1 (ENSHBUG00000013345) #10	ENSHBUG00000013307 ##11	ENSHBUG00000013075 ##13	ENSHBUG00000012853	map2k1 (ENSHBUG00000012769) #16	rpl4 (ENSHBUG00000012721) #18	zwilch (ENSHBUG00000012704) #19	LCTL (ENSHBUG00000012695) #20	snapc5 (ENSHBUG00000012617) #17	smad6b (ENSHBUG00000012608) #21	ENSHBUG00000012576 #22
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.a #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454.l	ENSGT00930000151035.a
P. nyererei	MODERN SPECIES	330	hexa (ENSPNYG00000013367)	arih1 (ENSPNYG00000013404)	ENSPNYG00000013487	hacd3 (ENSPNYG00000013539) #8	ints14 (ENSPNYG00000013587) #9	SLC24A1 (ENSPNYG00000013638) #10	ENSPNYG00000013709 ##11	ENSPNYG00000013766 ##13	ENSPNYG00000013866	map2k1 (ENSPNYG00000014012) #16	rpl4 (ENSPNYG00000014038) #18	zwilch (ENSPNYG00000014254) #19	LCTL (ENSPNYG00000014382) #20	snapc5 (ENSPNYG00000014419) #17	smad6b (ENSPNYG00000014464) #21	smad3b (ENSPNYG00000014483) #22	aagab (ENSPNYG00000014514) #23	iqch (ENSPNYG00000014565) #25	zgc:162898 (ENSPNYG00000014663) #26	skor1b (ENSPNYG00000014672) #28	PIAS1 (ENSPNYG00000014701) #29	morf4l1 (ENSPNYG00000014764)	TLE3 (ENSPNYG00000014824)	kif23 (ENSPNYG00000014871)	ddb2 (ENSPNYG00000014944)	ENSPNYG00000014956	kbtbd4 (ENSPNYG00000014971)	rapsn (ENSPNYG00000014981)	ENSPNYG00000014991	ighmbp2 (ENSPNYG00000015003)	chid1 (ENSPNYG00000015021)
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.a #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454.k.b	ENSGT00510000048454.l
Zebra mbuna	MODERN SPECIES	1110	hexa (ENSMZEG00005022579)	arih1 (ENSMZEG00005022582)	ENSMZEG00005022585	ppcdc (ENSMZEG00005022599)	hacd3 (ENSMZEG00005022607) #8	ints14 (ENSMZEG00005022613) #9	SLC24A1 (ENSMZEG00005022618) #10	ENSMZEG00005022627 ##11	ENSMZEG00005022640 ##13	map2k1 (ENSMZEG00005022643) #16	rpl4 (ENSMZEG00005022644) #18	zwilch (ENSMZEG00005022662) #19	LCTL (ENSMZEG00005022665) #20	snapc5 (ENSMZEG00005022673) #17	smad6b (ENSMZEG00005022680) #21	smad3b (ENSMZEG00005022682) #22	aagab (ENSMZEG00005022686) #23	iqch (ENSMZEG00005022693) #25	zgc:162898 (ENSMZEG00005022698) #26	skor1b (ENSMZEG00005022702) #28	PIAS1 (ENSMZEG00005022706) #29	morf4l1 (ENSMZEG00005000059)	TLE3 (ENSMZEG00005000148)	kif23 (ENSMZEG00005000318)	ddb2 (ENSMZEG00005000480)	ENSMZEG00005000486	kbtbd4 (ENSMZEG00005000506)	rapsn (ENSMZEG00005000597)	ENSMZEG00005000614	ENSMZEG00005000628	ENSMZEG00005000649
Eastern happy	MODERN SPECIES	19	hexa (ENSACLG00000016825)	arih1 (ENSACLG00000016725)	ENSACLG00000016653	ppcdc (ENSACLG00000016456)	hacd3 (ENSACLG00000016337) #8	ints14 (ENSACLG00000016244) #9	SLC24A1 (ENSACLG00000016209) #10	ENSACLG00000015789 ##11	ENSACLG00000015528 ##13	map2k1 (ENSACLG00000015490) #16	rpl4 (ENSACLG00000015376) #18	zwilch (ENSACLG00000015306) #19	LCTL (ENSACLG00000015185) #20	snapc5 (ENSACLG00000015178) #17	smad6b (ENSACLG00000015060) #21	smad3b (ENSACLG00000015005) #22	aagab (ENSACLG00000014966) #23	iqch (ENSACLG00000014950) #25	zgc:162898 (ENSACLG00000014936) #26	skor1b (ENSACLG00000014916) #28	PIAS1 (ENSACLG00000014895) #29	morf4l1 (ENSACLG00000014807)	TLE3 (ENSACLG00000014741)	kif23 (ENSACLG00000014717)	kif23 (ENSACLG00000014311)	ENSACLG00000014281	ddb2 (ENSACLG00000014238)	kbtbd4 (ENSACLG00000014220)	rapsn (ENSACLG00000014172)	ENSACLG00000014161	ENSACLG00000014155
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.a.b.b #22
Burton s mouthbrooder	MODERN SPECIES	588																smad3b (ENSHBUG00000017642) #22	aagab (ENSHBUG00000017658) #23	iqch (ENSHBUG00000017702) #25	zgc:162898 (ENSHBUG00000017718) #26	skor1b (ENSHBUG00000017726) #28	PIAS1 (ENSHBUG00000017743) #29	morf4l1 (ENSHBUG00000017810)	tle3a (ENSHBUG00000017866)	kif23 (ENSHBUG00000018203)	ddb2 (ENSHBUG00000018250)	ENSHBUG00000018262	kbtbd4 (ENSHBUG00000018269)	rapsn (ENSHBUG00000018276)	ENSHBUG00000018290	ENSHBUG00000018301	ighmbp2 (ENSHBUG00000018318)
Lyretail cichlid	MODERN SPECIES	305	arih1 (ENSNBRG00000016929)	ENSNBRG00000016913	ppcdc (ENSNBRG00000016756)	hacd3 (ENSNBRG00000016668) #8	ints14 (ENSNBRG00000016618) #9	SLC24A1 (ENSNBRG00000016597) #10	ENSNBRG00000016316 ##11	ENSNBRG00000016229	ENSNBRG00000016155 ##13	map2k1 (ENSNBRG00000016125) #16	rpl4 (ENSNBRG00000015986) #18	zwilch (ENSNBRG00000015874) #19	LCTL (ENSNBRG00000015831) #20	snapc5 (ENSNBRG00000015818) #17	smad6b (ENSNBRG00000015802) #21	smad3b (ENSNBRG00000015781) #22	aagab (ENSNBRG00000015745) #23	iqch (ENSNBRG00000015611) #25	zgc:162898 (ENSNBRG00000015586) #26	skor1b (ENSNBRG00000015564) #28	PIAS1 (ENSNBRG00000015347) #29	morf4l1 (ENSNBRG00000015273)	TLE3 (ENSNBRG00000015223)	kif23 (ENSNBRG00000015135)	ddb2 (ENSNBRG00000015103)	ENSNBRG00000015089	kbtbd4 (ENSNBRG00000014991)	rapsn (ENSNBRG00000014965)	ENSNBRG00000014952	ENSNBRG00000014940	ENSNBRG00000014925
Nile tilapia	MODERN SPECIES	19	ENSONIG00000038771	ppcdc (ENSONIG00000015408)	hacd3 (ENSONIG00000015409) #8	ints14 (ENSONIG00000015414) #9	ENSONIG00000042969 #10	SLC24A1 (ENSONIG00000015416) #10	ENSONIG00000015421 ##11	ENSONIG00000015428 ##13	ENSONIG00000034322	map2k1 (ENSONIG00000041722) #16	rpl4 (ENSONIG00000015438) #18	zwilch (ENSONIG00000015453) #19	LCTL (ENSONIG00000015457) #20	snapc5 (ENSONIG00000015460) #17	smad6 (ENSONIG00000027979) #21	smad3b (ENSONIG00000015464) #22	aagab (ENSONIG00000039374) #23	iqch (ENSONIG00000015469) #25	zgc:162898 (ENSONIG00000015471) #26	skor1b (ENSONIG00000041762) #28	PIAS1 (ENSONIG00000015473) #29	morf4l1 (ENSONIG00000015475)	TLE3 (ENSONIG00000015480)	ENSONIG00000039253	kif23 (ENSONIG00000040865)	kif23 (ENSONIG00000015489)	ddb2 (ENSONIG00000015496)	kbtbd4 (ENSONIG00000015498)	rapsn (ENSONIG00000015500)	ighmbp2 (ENSONIG00000015506)	chid1 (ENSONIG00000015510)
Midas cichlid	MODERN SPECIES	385	hexa (ENSACIG00000003137)	arih1 (ENSACIG00000003347)	ENSACIG00000003474	ppcdc (ENSACIG00000003479)	hacd3 (ENSACIG00000003504) #8	ints14 (ENSACIG00000003523) #9	SLC24A1 (ENSACIG00000003557) #10	ENSACIG00000003590 ##11	ENSACIG00000003648 ##13	map2k1 (ENSACIG00000003699) #16	rpl4 (ENSACIG00000003731) #18	zwilch (ENSACIG00000003822) #19	LCTL (ENSACIG00000003960) #20	snapc5 (ENSACIG00000004004) #17	smad6b (ENSACIG00000004032) #21	smad3b (ENSACIG00000004048) #22	aagab (ENSACIG00000004078) #23	iqch (ENSACIG00000004210) #25	zgc:162898 (ENSACIG00000004275) #26	skor1b (ENSACIG00000004288) #28	PIAS1 (ENSACIG00000004315) #29	morf4l1 (ENSACIG00000004474)	TLE3 (ENSACIG00000004505)	kif23 (ENSACIG00000004552)	ddb2 (ENSACIG00000004603)	kbtbd4 (ENSACIG00000004631)	rapsn (ENSACIG00000004645)	ENSACIG00000004657	ENSACIG00000004665	ighmbp2 (ENSACIG00000004670)	chid1 (ENSACIG00000004701)
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Mangrove rivulus	MODERN SPECIES	6	arih1 (ENSKMAG00000019124)	ENSKMAG00000019164	ppcdc (ENSKMAG00000019178)	hacd3 (ENSKMAG00000019204) #8	ints14 (ENSKMAG00000019255) #9	ENSKMAG00000019281 #10	SLC24A1 (ENSKMAG00000019301) #10	ENSKMAG00000019332 ##11	ENSKMAG00000019409 ##13	map2k1 (ENSKMAG00000019462) #16	rpl4 (ENSKMAG00000019520) #18	zwilch (ENSKMAG00000019558) #19	LCTL (ENSKMAG00000019610) #20	snapc5 (ENSKMAG00000019691) #17	smad6b (ENSKMAG00000019704) #21	smad3b (ENSKMAG00000019721) #22	aagab (ENSKMAG00000019751) #23	iqch (ENSKMAG00000019782) #25	zgc:162898 (ENSKMAG00000019840) #26	skor1b (ENSKMAG00000019852) #28	PIAS1 (ENSKMAG00000019888) #29	morf4l1 (ENSKMAG00000019932)	TLE3 (ENSKMAG00000019987)	kif23 (ENSKMAG00000020065)	ddb2 (ENSKMAG00000020178)	ENSKMAG00000020196	kbtbd4 (ENSKMAG00000020215)	rapsn (ENSKMAG00000020239)	ENSKMAG00000020264	ighmbp2 (ENSKMAG00000020284)	chid1 (ENSKMAG00000020332)
Turquoise killifish	MODERN SPECIES	1622	MEGF11 (ENSNFUG00015008461) ##13	MAP2K1 (ENSNFUG00015008325) #16	rpl4 (ENSNFUG00015008298) #18	ZWILCH (ENSNFUG00015008272) #19	LCTL (ENSNFUG00015008241) #20	snapc5 (ENSNFUG00015008236) #17	ENSNFUG00015008234	ENSNFUG00015008231	smad6b (ENSNFUG00015008229) #21	AAGAB (ENSNFUG00015008222) #23	iqch (ENSNFUG00015008218) #25	zgc:162898 (ENSNFUG00015008213) #26	skor1b (ENSNFUG00015008209) #28	PIAS1 (ENSNFUG00015008137) #29	morf4l1 (ENSNFUG00015008050)	smad3b (ENSNFUG00015007897) #22	TLE3 (ENSNFUG00015007251)	kif23 (ENSNFUG00015006836)	ddb2 (ENSNFUG00015006812)	ENSNFUG00015006807	KBTBD4 (ENSNFUG00015006805)	rapsn (ENSNFUG00015006800)	ENSNFUG00015006797	ighmbp2 (ENSNFUG00015006609)	chid1 (ENSNFUG00015006583)	PDDC1 (ENSNFUG00015006573)	cd151 (ENSNFUG00015006568)	cracr2b (ENSNFUG00015006558)	TMEM138 (ENSNFUG00015006556)	tmem258 (ENSNFUG00015006554)	MYRF (ENSNFUG00015006540)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
NAME_4	ANCESTRAL SPECIES	114															ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Mummichog	MODERN SPECIES	282															smad6b (ENSFHEG00000021787) #21	smad3b (ENSFHEG00000021766) #22	aagab (ENSFHEG00000021730) #23	iqch (ENSFHEG00000021713) #25	zgc:162898 (ENSFHEG00000021645) #26	skor1b (ENSFHEG00000021633) #28	ENSFHEG00000021615 #29	morf4l1 (ENSFHEG00000021591)	TLE3 (ENSFHEG00000021536)	kif23 (ENSFHEG00000021477)	ddb2 (ENSFHEG00000021285)	ENSFHEG00000021282	kbtbd4 (ENSFHEG00000021264)	ENSFHEG00000021254	rapsn (ENSFHEG00000021237)	ENSFHEG00000021215	ighmbp2 (ENSFHEG00000021211)
Sheepshead minnow	MODERN SPECIES	1118															smad6b (ENSCVAG00000007818) #21	smad3b (ENSCVAG00000007804) #22	aagab (ENSCVAG00000007763) #23	ENSCVAG00000007712	zgc:162898 (ENSCVAG00000007700) #26	skor1b (ENSCVAG00000007694) #28	PIAS1 (ENSCVAG00000007674) #29	morf4l1 (ENSCVAG00000007618)
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
NAME_6	ANCESTRAL SPECIES	38	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Amazon molly	MODERN SPECIES	332	arih1 (ENSPFOG00000006732)	ENSPFOG00000006845	ppcdc (ENSPFOG00000006856)	hacd3 (ENSPFOG00000006915) #8	ints14 (ENSPFOG00000006991) #9	ENSPFOG00000023612 #10	SLC24A1 (ENSPFOG00000007134) #10	ENSPFOG00000007336 ##11	ENSPFOG00000007620 ##13	map2k1 (ENSPFOG00000008205) #16	rpl4 (ENSPFOG00000008365) #18	zwilch (ENSPFOG00000008447) #19	LCTL (ENSPFOG00000008595) #20	snapc5 (ENSPFOG00000021667) #17	smad6b (ENSPFOG00000008775) #21	smad3b (ENSPFOG00000008802) #22	aagab (ENSPFOG00000008893) #23	iqch (ENSPFOG00000008947) #25	zgc:162898 (ENSPFOG00000009031) #26	skor1b (ENSPFOG00000009041) #28	PIAS1 (ENSPFOG00000009110) #29	morf4l1 (ENSPFOG00000009311)	TLE3 (ENSPFOG00000009535)	kif23 (ENSPFOG00000009992)	ddb2 (ENSPFOG00000010390)	kbtbd4 (ENSPFOG00000010466)	rapsn (ENSPFOG00000010493)	ENSPFOG00000010570	ighmbp2 (ENSPFOG00000010607)	chid1 (ENSPFOG00000010791)	gatd1 (ENSPFOG00000010873)
Sailfin molly	MODERN SPECIES	1411																smad3b (ENSPLAG00000007952) #22	aagab (ENSPLAG00000007922) #23	iqch (ENSPLAG00000007903) #25	zgc:162898 (ENSPLAG00000007775) #26	skor1b (ENSPLAG00000007766) #28	PIAS1 (ENSPLAG00000007727) #29	morf4l1 (ENSPLAG00000007668)
Guppy	MODERN SPECIES	458	hexa (ENSPREG00000009965)	arih1 (ENSPREG00000010115)	ENSPREG00000010149	ppcdc (ENSPREG00000010163)	hacd3 (ENSPREG00000010177) #8	ints14 (ENSPREG00000010197) #9	ENSPREG00000010239 #10	ENSPREG00000010304 ##11	ENSPREG00000010362 ##13	map2k1 (ENSPREG00000010418) #16	rpl4 (ENSPREG00000010449) #18	zwilch (ENSPREG00000010534) #19	LCTL (ENSPREG00000010570) #20	snapc5 (ENSPREG00000010651) #17	smad6b (ENSPREG00000010660) #21	smad3b (ENSPREG00000010683) #22	aagab (ENSPREG00000010705) #23	iqch (ENSPREG00000010718) #25	zgc:162898 (ENSPREG00000010732) #26	skor1b (ENSPREG00000010750) #28	PIAS1 (ENSPREG00000010768) #29	morf4l1 (ENSPREG00000010818)	TLE3 (ENSPREG00000010877)	kif23 (ENSPREG00000010939)	ddb2 (ENSPREG00000011139)	ENSPREG00000011171	kbtbd4 (ENSPREG00000011179)	rapsn (ENSPREG00000011191)	ENSPREG00000011207	ighmbp2 (ENSPREG00000011223)	chid1 (ENSPREG00000011264)
Platyfish	MODERN SPECIES	11	arih1 (ENSXMAG00000015819)	ENSXMAG00000022800	ppcdc (ENSXMAG00000015812)	hacd3 (ENSXMAG00000015797) #8	ints14 (ENSXMAG00000015780) #9	ENSXMAG00000015778 #10	SLC24A1 (ENSXMAG00000015769) #10	ENSXMAG00000003464 ##11	ENSXMAG00000003498 ##13	map2k1 (ENSXMAG00000003499) #16	rpl4 (ENSXMAG00000029529) #18	zwilch (ENSXMAG00000003532) #19	LCTL (ENSXMAG00000003540) #20	snapc5 (ENSXMAG00000003549) #17	smad6b (ENSXMAG00000003550) #21	smad3b (ENSXMAG00000003553) #22	aagab (ENSXMAG00000003564) #23	iqch (ENSXMAG00000003568) #25	zgc:162898 (ENSXMAG00000022123) #26	skor1b (ENSXMAG00000003579) #28	PIAS1 (ENSXMAG00000003583) #29	morf4l1 (ENSXMAG00000003604)	TLE3 (ENSXMAG00000003621)	kif23 (ENSXMAG00000003667)	ddb2 (ENSXMAG00000003694)	ENSXMAG00000023989	kbtbd4 (ENSXMAG00000003696)	ENSXMAG00000000599	ENSXMAG00000026603	ighmbp2 (ENSXMAG00000003705)	chid1 (ENSXMAG00000003714)
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	15	ano10a (ENSOMEG00000020591)	cnot10 (ENSOMEG00000020550)	ADCY3 (ENSOMEG00000020521)	zufsp (ENSOMEG00000020495)	WDR26 (ENSOMEG00000020409)	ENSOMEG00000020379	ENSOMEG00000020330	ENSOMEG00000020303	rnf19a (ENSOMEG00000020280)	pabpc1a (ENSOMEG00000020219)	ENSOMEG00000020153	ZNF706 (ENSOMEG00000020130)	ENSOMEG00000000761	ncalda (ENSOMEG00000020074)	smad6b (ENSOMEG00000020048) #21	smad3b (ENSOMEG00000020016) #22	aagab (ENSOMEG00000019971) #23	iqch (ENSOMEG00000019948) #25	zgc:162898 (ENSOMEG00000019899) #26	skor1b (ENSOMEG00000019886) #28	PIAS1 (ENSOMEG00000019860) #29	morf4l1 (ENSOMEG00000019799)	TLE3 (ENSOMEG00000019731)	kif23 (ENSOMEG00000019673)	ddb2 (ENSOMEG00000019402)	ENSOMEG00000019359	kbtbd4 (ENSOMEG00000019350)	rapsn (ENSOMEG00000019340)	ENSOMEG00000019319	ighmbp2 (ENSOMEG00000019296)	chid1 (ENSOMEG00000019221)
Indian medaka	MODERN SPECIES	427																ENSOMEG00000018338 #22
Javanese ricefish	MODERN SPECIES	20	nr2e3 (ENSOJAG00000017186)	hexa (ENSOJAG00000015950)	arih1 (ENSOJAG00000015474)	ENSOJAG00000015447	ppcdc (ENSOJAG00000015440)	hacd3 (ENSOJAG00000015219) #8	ints14 (ENSOJAG00000014921) #9	ENSOJAG00000014816 #10	SLC24A1 (ENSOJAG00000014806) #10	ENSOJAG00000014599 ##11	ENSOJAG00000013786 ##13	map2k1 (ENSOJAG00000013527) #16	rpl4 (ENSOJAG00000013399) #18	zwilch (ENSOJAG00000013246) #19	smad6b (ENSOJAG00000013057) #21	smad3b (ENSOJAG00000012829) #22	aagab (ENSOJAG00000012590) #23	iqch (ENSOJAG00000012524) #25	zgc:162898 (ENSOJAG00000012513) #26	skor1b (ENSOJAG00000012503) #28	PIAS1 (ENSOJAG00000012338) #29	morf4l1 (ENSOJAG00000012268)	TLE3 (ENSOJAG00000011183)	kif23 (ENSOJAG00000008816)	ddb2 (ENSOJAG00000008503)	ENSOJAG00000008474	kbtbd4 (ENSOJAG00000008453)	rapsn (ENSOJAG00000008442)	ENSOJAG00000008433	ighmbp2 (ENSOJAG00000008377)	chid1 (ENSOJAG00000007755)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT01030000234532.B.e.b.f.d #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000007094	ppcdc (ENSORLG00000007090)	hacd3 (ENSORLG00000007078) #8	ints14 (ENSORLG00000007056) #9	ENSORLG00000028299 #10	ENSORLG00000026631	SLC24A1 (ENSORLG00000007029) #10	ENSORLG00000007022 ##11	ENSORLG00000006997 ##13	map2k1 (ENSORLG00000006926) #16	rpl4 (ENSORLG00000006882) #18	zwilch (ENSORLG00000006863) #19	LCTL (ENSORLG00000006840) #20	ENSORLG00000025403	smad6b (ENSORLG00000006825) #21	smad3b (ENSORLG00000006803) #22	aagab (ENSORLG00000006754) #23	zgc:162898 (ENSORLG00000006741) #26	skor1b (ENSORLG00000006736) #28	PIAS1 (ENSORLG00000006728) #29	morf4l1 (ENSORLG00000025632)	TLE3 (ENSORLG00000006700)	kif23 (ENSORLG00000006689)	ddb2 (ENSORLG00000006657)	ENSORLG00000029307	kbtbd4 (ENSORLG00000006648)	rapsn (ENSORLG00000006635)	ENSORLG00000006610	ighmbp2 (ENSORLG00000006561)	chid1 (ENSORLG00000006537)	gatd1 (ENSORLG00000006504)
Chinese medaka	MODERN SPECIES	673																smad3b (ENSOSIG00000020261) #22
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	40	arih1 (ENSLBEG00000016202)	ENSLBEG00000016174	ppcdc (ENSLBEG00000016135)	hacd3 (ENSLBEG00000016087) #8	ints14 (ENSLBEG00000016057) #9	SLC24A1 (ENSLBEG00000016038) #10	SLC24A1 (ENSLBEG00000016014) #10	ENSLBEG00000015940 ##11	ENSLBEG00000015733 ##13	map2k1 (ENSLBEG00000015601) #16	rpl4 (ENSLBEG00000015490) #18	zwilch (ENSLBEG00000015453) #19	LCTL (ENSLBEG00000015396) #20	snapc5 (ENSLBEG00000015381) #17	smad6b (ENSLBEG00000015360) #21	smad3b (ENSLBEG00000015322) #22	aagab (ENSLBEG00000015299) #23	iqch (ENSLBEG00000015224) #25	zgc:162898 (ENSLBEG00000015192) #26	skor1b (ENSLBEG00000015181) #28	PIAS1 (ENSLBEG00000015142) #29	morf4l1 (ENSLBEG00000015124)	TLE3 (ENSLBEG00000015053)	kif23 (ENSLBEG00000014888)	ddb2 (ENSLBEG00000014759)	ENSLBEG00000014710	kbtbd4 (ENSLBEG00000014698)	rapsn (ENSLBEG00000014666)	ENSLBEG00000014647	ighmbp2 (ENSLBEG00000014501)	chid1 (ENSLBEG00000014374)
Ballan wrasse	MODERN SPECIES	1729																smad3b (ENSLBEG00000017843) #22	ENSLBEG00000017827 #23
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
European seabass	MODERN SPECIES	19	arih1 (ENSDLAG00005026838)	ENSDLAG00005033300	ENSDLAG00005004072	ints14 (ENSDLAG00005004123) #9	hacd3 (ENSDLAG00005004092) #8	ENSDLAG00005004229 #10	ENSDLAG00005004243 #10	ENSDLAG00005004333 ##11	ENSDLAG00005004815 ##13	map2k1 (ENSDLAG00005005002) #16	rpl4 (ENSDLAG00005005228) #18	zwilch (ENSDLAG00005005332) #19	LCTL (ENSDLAG00005005497) #20	snapc5 (ENSDLAG00005005541) #17	smad6b (ENSDLAG00005033513) #21	smad3b (ENSDLAG00005005574) #22	aagab (ENSDLAG00005005902) #23	zgc:162898 (ENSDLAG00005031120) #26	skor1b (ENSDLAG00005005972) #28	PIAS1 (ENSDLAG00005006027) #29	ENSDLAG00005006449	morf4l1 (ENSDLAG00005006479)	ENSDLAG00005006914	ddb2 (ENSDLAG00005010094)	kif23 (ENSDLAG00005007984)	ENSDLAG00005010122	kbtbd4 (ENSDLAG00005026445)	ENSDLAG00005031626	ighmbp2 (ENSDLAG00005010154)	chid1 (ENSDLAG00005010232)	gatd1 (ENSDLAG00005010725)
Large yellow croaker	MODERN SPECIES	492	arih1 (ENSLCRG00005010040)	ENSLCRG00005010032	ppcdc (ENSLCRG00005010030)	hacd3 (ENSLCRG00005009991) #8	ints14 (ENSLCRG00005009985) #9	SLC24A1 (ENSLCRG00005009983) #10	SLC24A1 (ENSLCRG00005009980) #10	ENSLCRG00005009722 ##11	ENSLCRG00005009493 ##13	map2k1 (ENSLCRG00005009481) #16	rpl4 (ENSLCRG00005008994) #18	zwilch (ENSLCRG00005008990) #19	LCTL (ENSLCRG00005008987) #20	snapc5 (ENSLCRG00005008983) #17	smad6b (ENSLCRG00005008982) #21	smad3b (ENSLCRG00005008972) #22	aagab (ENSLCRG00005008957) #23	iqch (ENSLCRG00005008950) #25	zgc:162898 (ENSLCRG00005008946) #26	skor1b (ENSLCRG00005008945) #28	ENSLCRG00005008944 #29	PIAS1 (ENSLCRG00005008812) #29	morf4l1 (ENSLCRG00005008690)	TLE3 (ENSLCRG00005007697)	kif23 (ENSLCRG00005007598)	ddb2 (ENSLCRG00005007589)	ENSLCRG00005007587	kbtbd4 (ENSLCRG00005007586)	rapsn (ENSLCRG00005007583)	ENSLCRG00005007582	ighmbp2 (ENSLCRG00005007561)
Gilthead seabream	MODERN SPECIES	22	arih1 (ENSSAUG00010009448)	ENSSAUG00010009484	ppcdc (ENSSAUG00010009485)	hacd3 (ENSSAUG00010009487) #8	ints14 (ENSSAUG00010009496) #9	SLC24A1 (ENSSAUG00010009505) #10	SLC24A1 (ENSSAUG00010009511) #10	ENSSAUG00010009514 ##11	ENSSAUG00010009554 ##13	map2k1 (ENSSAUG00010010913) #16	rpl4 (ENSSAUG00010011110) #18	zwilch (ENSSAUG00010011149) #19	LCTL (ENSSAUG00010011608) #20	snapc5 (ENSSAUG00010011612) #17	smad6b (ENSSAUG00010011616) #21	smad3b (ENSSAUG00010011625) #22	aagab (ENSSAUG00010011683) #23	iqch (ENSSAUG00010011685) #25	zgc:162898 (ENSSAUG00010011688) #26	skor1b (ENSSAUG00010011689) #28	PIAS1 (ENSSAUG00010011693) #29	kif23 (ENSSAUG00010011708)	morf4l1 (ENSSAUG00010011733)	TLE3 (ENSSAUG00010012732)	kif23 (ENSSAUG00010013254)	ddb2 (ENSSAUG00010014512)	ENSSAUG00010014514	kbtbd4 (ENSSAUG00010014515)	rapsn (ENSSAUG00010014517)	ighmbp2 (ENSSAUG00010014523)	chid1 (ENSSAUG00010014549)
Perciformes	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047
Lumpfish	MODERN SPECIES	21	arih1 (ENSCLMG00005000474)	ENSCLMG00005000456	ppcdc (ENSCLMG00005000450)	hacd3 (ENSCLMG00005000359) #8	ints14 (ENSCLMG00005000331) #9	SLC24A1 (ENSCLMG00005000323) #10	ENSCLMG00005000266 ##11	ENSCLMG00005000242 ##13	map2k1 (ENSCLMG00005000174) #16	RPL4 (ENSCLMG00005019911) #18	rpl4 (ENSCLMG00005019898) #18	zwilch (ENSCLMG00005019897) #19	LCTL (ENSCLMG00005019896) #20	snapc5 (ENSCLMG00005019894) #17	smad6b (ENSCLMG00005019893) #21	smad3b (ENSCLMG00005019769) #22	aagab (ENSCLMG00005019765) #23	iqch (ENSCLMG00005019726) #25	zgc:162898 (ENSCLMG00005019722) #26	skor1b (ENSCLMG00005019721) #28	PIAS1 (ENSCLMG00005019623) #29	morf4l1 (ENSCLMG00005019604)	TLE3 (ENSCLMG00005019055)	kif23 (ENSCLMG00005018591)	ddb2 (ENSCLMG00005018579)	kbtbd4 (ENSCLMG00005018576)	rapsn (ENSCLMG00005018574)	ENSCLMG00005018573	ighmbp2 (ENSCLMG00005018566)	chid1 (ENSCLMG00005018557)	gatd1 (ENSCLMG00005018556)
Stickleback	MODERN SPECIES	14	nr2e3 (ENSGACG00000004739)	hexa (ENSGACG00000004744)	arih1 (ENSGACG00000004772)	ppcdc (ENSGACG00000004795)	hacd3 (ENSGACG00000004806) #8	ints14 (ENSGACG00000004827) #9	SLC24A1 (ENSGACG00000004859) #10	ENSGACG00000004867 ##11	ENSGACG00000004885 ##13	map2k1 (ENSGACG00000004903) #16	rpl4 (ENSGACG00000004968) #18	zwilch (ENSGACG00000005043) #19	LCTL (ENSGACG00000005057) #20	snapc5 (ENSGACG00000005078) #17	smad6b (ENSGACG00000005085) #21	smad3b (ENSGACG00000005092) #22	aagab (ENSGACG00000005119) #23	iqch (ENSGACG00000005158) #25	zgc:162898 (ENSGACG00000005167) #26	skor1b (ENSGACG00000005171) #28	PIAS1 (ENSGACG00000005176) #29	morf4l1 (ENSGACG00000005181)	TLE3 (ENSGACG00000005213)	kif23 (ENSGACG00000005226)	ddb2 (ENSGACG00000005252)	kbtbd4 (ENSGACG00000005255)	rapsn (ENSGACG00000005265)	ighmbp2 (ENSGACG00000005293)	chid1 (ENSGACG00000005331)	gatd1 (ENSGACG00000005355)	cd151 (ENSGACG00000005365)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Channel bull blenny	MODERN SPECIES	20	hexa (ENSCGOG00000008317)	arih1 (ENSCGOG00000010759)	ENSCGOG00000010801	ppcdc (ENSCGOG00000010802)	hacd3 (ENSCGOG00000010806) #8	ints14 (ENSCGOG00000010944) #9	SLC24A1 (ENSCGOG00000010978) #10	ENSCGOG00000011005 ##11	ENSCGOG00000012718 ##13	map2k1 (ENSCGOG00000012783) #16	rpl4 (ENSCGOG00000014628) #18	zwilch (ENSCGOG00000014660) #19	LCTL (ENSCGOG00000014696) #20	snapc5 (ENSCGOG00000014701) #17	smad6b (ENSCGOG00000014702) #21	smad3b (ENSCGOG00000014715) #22	aagab (ENSCGOG00000015616) #23	iqch (ENSCGOG00000015654) #25	zgc:162898 (ENSCGOG00000015744) #26	skor1b (ENSCGOG00000015746) #28	PIAS1 (ENSCGOG00000015764) #29	morf4l1 (ENSCGOG00000016522)	TLE3 (ENSCGOG00000017111)	kif23 (ENSCGOG00000017942)	ddb2 (ENSCGOG00000018311)	ENSCGOG00000018313	kbtbd4 (ENSCGOG00000018314)	rapsn (ENSCGOG00000018322)	ighmbp2 (ENSCGOG00000018334)	chid1 (ENSCGOG00000018514)	gatd1 (ENSCGOG00000018608)
Pike perch	MODERN SPECIES	6	hexa (ENSSLUG00000018512)	arih1 (ENSSLUG00000018735)	ENSSLUG00000018766	ppcdc (ENSSLUG00000018769)	hacd3 (ENSSLUG00000018784) #8	ints14 (ENSSLUG00000018842) #9	SLC24A1 (ENSSLUG00000018879) #10	ENSSLUG00000018947 ##11	ENSSLUG00000019161 ##13	map2k1 (ENSSLUG00000000165) #16	rpl4 (ENSSLUG00000000272) #18	zwilch (ENSSLUG00000000305) #19	LCTL (ENSSLUG00000000329) #20	snapc5 (ENSSLUG00000000334) #17	smad6b (ENSSLUG00000000337) #21	smad3b (ENSSLUG00000000353) #22	aagab (ENSSLUG00000000395) #23	iqch (ENSSLUG00000000409) #25	zgc:162898 (ENSSLUG00000000425) #26	skor1b (ENSSLUG00000000431) #28	PIAS1 (ENSSLUG00000000454) #29	morf4l1 (ENSSLUG00000000519)	TLE3 (ENSSLUG00000000698)	kif23 (ENSSLUG00000000973)	ddb2 (ENSSLUG00000001144)	ENSSLUG00000001150	kbtbd4 (ENSSLUG00000001154)	rapsn (ENSSLUG00000001159)	ENSSLUG00000001166	ighmbp2 (ENSSLUG00000001171)	chid1 (ENSSLUG00000001180)
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT01030000234614.C	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b.p #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.e.a	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785.c	ENSGT00510000048454	ENSGT00940000160974.b.c	ENSGT00390000017767.a.b	ENSGT00390000010968.a
Fugu	MODERN SPECIES	21	stoml1 (ENSTRUG00000019856)	arih1 (ENSTRUG00000013998)	ENSTRUG00000022549	ppcdc (ENSTRUG00000014075)	hacd3 (ENSTRUG00000031290) #8	ints14 (ENSTRUG00000014091) #9	SLC24A1 (ENSTRUG00000014175) #10	ENSTRUG00000014237 ##11	ENSTRUG00000014394 ##13	map2k1 (ENSTRUG00000014529) #16	rpl4 (ENSTRUG00000014667) #18	zwilch (ENSTRUG00000021693) #19	LCTL (ENSTRUG00000014732) #20	snapc5 (ENSTRUG00000020463) #17	smad6b (ENSTRUG00000021541) #21	smad3b (ENSTRUG00000014802) #22	aagab (ENSTRUG00000014949) #23	zgc:162898 (ENSTRUG00000020437) #26	skor1b (ENSTRUG00000014982) #28	morf4l1 (ENSTRUG00000015077)	TLE3 (ENSTRUG00000015125)	kif23 (ENSTRUG00000015223)	ddb2 (ENSTRUG00000015270)	ENSTRUG00000023761	kbtbd4 (ENSTRUG00000023881)	rapsn (ENSTRUG00000015311)	ENSTRUG00000015338	drd4a (ENSTRUG00000015396)	ENSTRUG00000025260	GRAMD4 (ENSTRUG00000015437)	ENSTRUG00000031619
Tetraodon	MODERN SPECIES	4	stra6 (ENSTNIG00000008417)	cyp11a1.1 (ENSTNIG00000008418)	stoml1 (ENSTNIG00000008419)	arih1 (ENSTNIG00000008420)	ppcdc (ENSTNIG00000008421)	hacd3 (ENSTNIG00000008422) #8	ints14 (ENSTNIG00000008423) #9	SLC24A1 (ENSTNIG00000008424) #10	ENSTNIG00000008425 ##11	ENSTNIG00000008426 ##13	map2k1 (ENSTNIG00000008427) #16	rpl4 (ENSTNIG00000008428) #18	zwilch (ENSTNIG00000008429) #19	LCTL (ENSTNIG00000008430) #20	smad6b (ENSTNIG00000008431) #21	smad3b (ENSTNIG00000008432) #22	aagab (ENSTNIG00000008433) #23	skor1b (ENSTNIG00000001504) #28	PIAS1 (ENSTNIG00000008434) #29	morf4l1 (ENSTNIG00000008435)	TLE3 (ENSTNIG00000008436)	kif23 (ENSTNIG00000008437)	ENSTNIG00000008438	drd4a (ENSTNIG00000008439)	GRAMD4 (ENSTNIG00000008440)	ENSTNIG00000000775	CERK (ENSTNIG00000008441)	ENSTNIG00000002358	MYO9A (ENSTNIG00000008442)	ENSTNIG00000001255	ENSTNIG00000000287
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Climbing perch	MODERN SPECIES	19	hexa (ENSATEG00000009154)	arih1 (ENSATEG00000009186)	ENSATEG00000009236	ppcdc (ENSATEG00000029359)	hacd3 (ENSATEG00000025872) #8	ints14 (ENSATEG00000009319) #9	SLC24A1 (ENSATEG00000009377) #10	ENSATEG00000009439 ##11	ENSATEG00000009531 ##13	map2k1 (ENSATEG00000009613) #16	rpl4 (ENSATEG00000009670) #18	zwilch (ENSATEG00000009702) #19	LCTL (ENSATEG00000009711) #20	snapc5 (ENSATEG00000009776) #17	smad6b (ENSATEG00000009784) #21	smad3b (ENSATEG00000009812) #22	aagab (ENSATEG00000009864) #23	iqch (ENSATEG00000009880) #25	C15orf61 (ENSATEG00000028998) #26	skor1b (ENSATEG00000009950) #28	PIAS1 (ENSATEG00000009975) #29	morf4l1 (ENSATEG00000009987)	ENSATEG00000010004	kif23 (ENSATEG00000010066)	ddb2 (ENSATEG00000010174)	ENSATEG00000010195	kbtbd4 (ENSATEG00000010209)	rapsn (ENSATEG00000010221)	ENSATEG00000026938	ighmbp2 (ENSATEG00000010246)	ENSATEG00000010296
Siamese fighting fish	MODERN SPECIES	17	hexa (ENSBSLG00000014091)	arih1 (ENSBSLG00000014624)	ENSBSLG00000014828	ppcdc (ENSBSLG00000014843)	hacd3 (ENSBSLG00000014925) #8	ints14 (ENSBSLG00000014980) #9	SLC24A1 (ENSBSLG00000015079) #10	ENSBSLG00000015093 ##11	ENSBSLG00000015132 ##13	map2k1 (ENSBSLG00000015609) #16	rpl4 (ENSBSLG00000016291) #18	zwilch (ENSBSLG00000016330) #19	LCTL (ENSBSLG00000016343) #20	snapc5 (ENSBSLG00000016407) #17	smad6b (ENSBSLG00000016413) #21	smad3b (ENSBSLG00000016420) #22	aagab (ENSBSLG00000016446) #23	iqch (ENSBSLG00000016456) #25	zgc:162898 (ENSBSLG00000016466) #26	skor1b (ENSBSLG00000016468) #28	PIAS1 (ENSBSLG00000016477) #29	morf4l1 (ENSBSLG00000016545)	TLE3 (ENSBSLG00000017067)	kif23 (ENSBSLG00000018655)	ddb2 (ENSBSLG00000019623)	ENSBSLG00000019633	kbtbd4 (ENSBSLG00000019638)	rapsn (ENSBSLG00000019644)	ENSBSLG00000019652	ighmbp2 (ENSBSLG00000019655)	chid1 (ENSBSLG00000019714)
Zig-zag eel	MODERN SPECIES	20	arih1 (ENSMAMG00000006559)	ENSMAMG00000006536	ppcdc (ENSMAMG00000006514)	hacd3 (ENSMAMG00000006428) #8	ints14 (ENSMAMG00000006472) #9	SLC24A1 (ENSMAMG00000006350) #10	ENSMAMG00000006239 ##11	ENSMAMG00000006178 ##13	map2k1 (ENSMAMG00000006146) #16	rpl4 (ENSMAMG00000006058) #18	zwilch (ENSMAMG00000006031) #19	LCTL (ENSMAMG00000006001) #20	snapc5 (ENSMAMG00000005992) #17	ENSMAMG00000024281	smad6b (ENSMAMG00000005972) #21	smad3b (ENSMAMG00000005952) #22	aagab (ENSMAMG00000005930) #23	iqch (ENSMAMG00000005883) #25	zgc:162898 (ENSMAMG00000005865) #26	skor1b (ENSMAMG00000005854) #28	PIAS1 (ENSMAMG00000005844) #29	ENSMAMG00000024365	morf4l1 (ENSMAMG00000005793)	ENSMAMG00000005747	kif23 (ENSMAMG00000005646)	ddb2 (ENSMAMG00000005596)	ENSMAMG00000024728	kbtbd4 (ENSMAMG00000027596)	rapsn (ENSMAMG00000005567)	ighmbp2 (ENSMAMG00000005532)	chid1 (ENSMAMG00000005523)
Carangaria	ANCESTRAL SPECIES	6	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT01030000234614.C	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Turbot	MODERN SPECIES	1	ENSSMAG00000015064	ppcdc (ENSSMAG00000015044)	hacd3 (ENSSMAG00000015006) #8	ints14 (ENSSMAG00000014965) #9	SLC24A1 (ENSSMAG00000014927) #10	SLC24A1 (ENSSMAG00000014916) #10	ENSSMAG00000014740 ##11	ENSSMAG00000014692 ##13	ENSSMAG00000028102	map2k1 (ENSSMAG00000014654) #16	rpl4 (ENSSMAG00000014547) #18	zwilch (ENSSMAG00000014527) #19	LCTL (ENSSMAG00000014482) #20	snapc5 (ENSSMAG00000014452) #17	smad6b (ENSSMAG00000014437) #21	smad3b (ENSSMAG00000014385) #22	aagab (ENSSMAG00000014364) #23	iqch (ENSSMAG00000014326) #25	zgc:162898 (ENSSMAG00000014311) #26	skor1b (ENSSMAG00000014267) #28	PIAS1 (ENSSMAG00000014246) #29	morf4l1 (ENSSMAG00000014185)	ENSSMAG00000013997	kif23 (ENSSMAG00000013831)	ddb2 (ENSSMAG00000013800)	ENSSMAG00000013793	kbtbd4 (ENSSMAG00000013783)	rapsn (ENSSMAG00000013780)	ENSSMAG00000013697	ighmbp2 (ENSSMAG00000013687)	chid1 (ENSSMAG00000013674)
Tongue sole	MODERN SPECIES	16	cyp11a1.1 (ENSCSEG00000006612)	stoml1 (ENSCSEG00000006621)	ARIH1 (ENSCSEG00000006629)	ENSCSEG00000006651	ppcdc (ENSCSEG00000006657)	ints14 (ENSCSEG00000006667) #9	SLC24A1 (ENSCSEG00000006709) #10	ENSCSEG00000006736 ##11	ENSCSEG00000006816 ##13	map2k1 (ENSCSEG00000006882) #16	rpl4 (ENSCSEG00000006912) #18	zwilch (ENSCSEG00000006998) #19	LCTL (ENSCSEG00000007031) #20	snapc5 (ENSCSEG00000007049) #17	smad6b (ENSCSEG00000007053) #21	smad3b (ENSCSEG00000007063) #22	TLE3 (ENSCSEG00000007088)	morf4l1 (ENSCSEG00000007129)	PIAS1 (ENSCSEG00000007150) #29	skor1b (ENSCSEG00000007194) #28	zgc:162898 (ENSCSEG00000007204) #26	iqch (ENSCSEG00000007210) #25	aagab (ENSCSEG00000007229) #23	ENSCSEG00000007234	kif23 (ENSCSEG00000007240)	ddb2 (ENSCSEG00000007319)	ENSCSEG00000007333	kbtbd4 (ENSCSEG00000007357)	rapsn (ENSCSEG00000007367)	ENSCSEG00000007385	ighmbp2 (ENSCSEG00000007513)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT00940000181062	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a
Seriola	ANCESTRAL SPECIES	5	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f.c #10	ENSGT00940000155836.A ##11	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT00940000181062	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069
Yellowtail amberjack	MODERN SPECIES	3044	arih1 (ENSSLDG00000023887)	ENSSLDG00000023878	ppcdc (ENSSLDG00000023867)	hacd3 (ENSSLDG00000023846) #8	ints14 (ENSSLDG00000023818) #9	ENSSLDG00000023813 #10	SLC24A1 (ENSSLDG00000023774) #10	ENSSLDG00000023736 ##11	ENSSLDG00000023706 ##13	map2k1 (ENSSLDG00000023678) #16	rpl4 (ENSSLDG00000023658) #18	zwilch (ENSSLDG00000023641) #19	LCTL (ENSSLDG00000023587) #20	snapc5 (ENSSLDG00000023570) #17	smad6b (ENSSLDG00000023557) #21	smad3b (ENSSLDG00000023534) #22	aagab (ENSSLDG00000023521) #23	iqch (ENSSLDG00000023494) #25	zgc:162898 (ENSSLDG00000023483) #26	skor1b (ENSSLDG00000023468) #28	PIAS1 (ENSSLDG00000023434) #29	morf4l1 (ENSSLDG00000023383)	ENSSLDG00000023373	TLE3 (ENSSLDG00000023328)	kif23 (ENSSLDG00000023233)	ddb2 (ENSSLDG00000023204)	kbtbd4 (ENSSLDG00000023182)	rapsn (ENSSLDG00000023154)	ighmbp2 (ENSSLDG00000023119)	chid1 (ENSSLDG00000023101)	gatd1 (ENSSLDG00000023050)
Greater amberjack	MODERN SPECIES	82	arih1 (ENSSDUG00000008436)	ENSSDUG00000008409	ppcdc (ENSSDUG00000008384)	hacd3 (ENSSDUG00000008342) #8	ints14 (ENSSDUG00000008301) #9	SLC24A1 (ENSSDUG00000008280) #10	SLC24A1 (ENSSDUG00000008265) #10	ENSSDUG00000008166 ##11	ENSSDUG00000008123 ##13	map2k1 (ENSSDUG00000008098) #16	RPL4 (ENSSDUG00000008061) #18	zwilch (ENSSDUG00000008041) #19	LCTL (ENSSDUG00000008008) #20	snapc5 (ENSSDUG00000008001) #17	smad6b (ENSSDUG00000007977) #21	smad3b (ENSSDUG00000007957) #22	aagab (ENSSDUG00000007934) #23	iqch (ENSSDUG00000007847) #25	zgc:162898 (ENSSDUG00000007821) #26	skor1b (ENSSDUG00000007810) #28	PIAS1 (ENSSDUG00000007716) #29	morf4l1 (ENSSDUG00000007640)	ENSSDUG00000007621	TLE3 (ENSSDUG00000007577)	kif23 (ENSSDUG00000007360)	ddb2 (ENSSDUG00000007314)	kbtbd4 (ENSSDUG00000007244)	rapsn (ENSSDUG00000007217)
Barramundi perch	MODERN SPECIES	17	arih1 (ENSLCAG00010011638)	ENSLCAG00010011674	ppcdc (ENSLCAG00010011677)	hacd3 (ENSLCAG00010011684) #8	ints14 (ENSLCAG00010011694) #9	SLC24A1 (ENSLCAG00010011706) #10	ENSLCAG00010011723 ##11	ENSLCAG00010011752	ENSLCAG00010011758 ##13	map2k1 (ENSLCAG00010011873) #16	rpl4 (ENSLCAG00010012306) #18	zwilch (ENSLCAG00010012324) #19	LCTL (ENSLCAG00010012337) #20	snapc5 (ENSLCAG00010012353) #17	smad6b (ENSLCAG00010012358) #21	smad3b (ENSLCAG00010012407) #22	aagab (ENSLCAG00010012566) #23	iqch (ENSLCAG00010012573) #25	zgc:162898 (ENSLCAG00010012578) #26	skor1b (ENSLCAG00010012584) #28	PIAS1 (ENSLCAG00010012593) #29	morf4l1 (ENSLCAG00010012622)	ENSLCAG00010012673	TLE3 (ENSLCAG00010012751)	kif23 (ENSLCAG00010013211)	ddb2 (ENSLCAG00010013840)	ENSLCAG00010013847	kbtbd4 (ENSLCAG00010013848)	rapsn (ENSLCAG00010013851)	ENSLCAG00010013858	ighmbp2 (ENSLCAG00010013871)
Tiger tail seahorse	MODERN SPECIES	249	stoml1 (ENSHCOG00000014203)	arih1 (ENSHCOG00000014228)	ENSHCOG00000014240	ppcdc (ENSHCOG00000014241)	hacd3 (ENSHCOG00000014277) #8	ints14 (ENSHCOG00000014315) #9	SLC24A1 (ENSHCOG00000014347) #10	ENSHCOG00000014412 ##11	ENSHCOG00000014452 ##13	map2k1 (ENSHCOG00000014666) #16	rpl4 (ENSHCOG00000014929) #18	zwilch (ENSHCOG00000014943) #19	LCTL (ENSHCOG00000014977) #20	snapc5 (ENSHCOG00000014982) #17	smad6b (ENSHCOG00000015011) #21	smad3b (ENSHCOG00000015055) #22	aagab (ENSHCOG00000015070) #23	zgc:162898 (ENSHCOG00000015085) #26	skor1b (ENSHCOG00000015092) #28	PIAS1 (ENSHCOG00000015129) #29	morf4l1 (ENSHCOG00000000418)	TLE3 (ENSHCOG00000015185)	kif23 (ENSHCOG00000015297)	ddb2 (ENSHCOG00000015319)	ENSHCOG00000015337
Pinecone sodierfish	MODERN SPECIES	20	hexa (ENSMMDG00005010279)	arih1 (ENSMMDG00005010264)	ENSMMDG00005010261	ppcdc (ENSMMDG00005010260)	hacd3 (ENSMMDG00005010257) #8	ints14 (ENSMMDG00005010242) #9	SLC24A1 (ENSMMDG00005010216) #10	ENSMMDG00005010200 ##11	ENSMMDG00005010191 ##13	map2k1 (ENSMMDG00005010104) #16	rpl4 (ENSMMDG00005009927) #18	zwilch (ENSMMDG00005009915) #19	LCTL (ENSMMDG00005009714) #20	snapc5 (ENSMMDG00005009708) #17	smad6b (ENSMMDG00005009705) #21	smad3b (ENSMMDG00005009590) #22	aagab (ENSMMDG00005009566) #23	iqch (ENSMMDG00005009565) #25	zgc:162898 (ENSMMDG00005009564) #26	skor1b (ENSMMDG00005009562) #28	PIAS1 (ENSMMDG00005009535) #29	morf4l1 (ENSMMDG00005009517)	TLE3 (ENSMMDG00005007447)	kif23 (ENSMMDG00005004943)	ddb2 (ENSMMDG00005004863)	ENSMMDG00005004856	kbtbd4 (ENSMMDG00005004850)	rapsn (ENSMMDG00005004846)	ighmbp2 (ENSMMDG00005004807)	chid1 (ENSMMDG00005004213)	gatd1 (ENSMMDG00005004177)
Cod	MODERN SPECIES	22	ENSGMOG00000036344	ppcdc (ENSGMOG00000008350)	hacd3 (ENSGMOG00000008351) #8	ints14 (ENSGMOG00000008352) #9	SLC24A1 (ENSGMOG00000024598) #10	ENSGMOG00000008354 ##11	ENSGMOG00000036396	ENSGMOG00000008355 #12	ENSGMOG00000008356 ##13	map2k1 (ENSGMOG00000008358) #16	rpl4 (ENSGMOG00000008359) #18	zwilch (ENSGMOG00000008360) #19	LCTL (ENSGMOG00000008361) #20	snapc5 (ENSGMOG00000036981) #17	smad6b (ENSGMOG00000008363) #21	smad3b (ENSGMOG00000029371) #22	aagab (ENSGMOG00000008365) #23	zgc:162898 (ENSGMOG00000008367) #26	skor1b (ENSGMOG00000033826) #28	PIAS1 (ENSGMOG00000008372) #29	morf4l1 (ENSGMOG00000008374)	kif23 (ENSGMOG00000017492)	ddb2 (ENSGMOG00000017517)	kbtbd4 (ENSGMOG00000017530)	rapsn (ENSGMOG00000017544)	ighmbp2 (ENSGMOG00000017553)	chid1 (ENSGMOG00000017597)	gatd1 (ENSGMOG00000017617)	cd151 (ENSGMOG00000017632)	cracr2b (ENSGMOG00000017652)	tmem138 (ENSGMOG00000032822)
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000155744.t.b	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.A ##11	ENSGT00940000154914.wb #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b.j #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047	ENSGT00940000157760.g.b	ENSGT00440000033504.A
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	271	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT00940000155836.A ##11	ENSGT00940000154914.wb #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b.j #21	ENSGT00940000153499.b.b.d.a.b.g #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00940000158440.g.b.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #29
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT00940000155836.A ##11	ENSGT00940000154914.wb.b #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145.q #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331.k.a #17	ENSGT00940000158146.b.j #21	ENSGT00940000153499.b.b.d.a.b.g #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00940000158440.g.b.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #29	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881	ENSGT00510000048454	ENSGT00940000157760.g.b	ENSGT00440000033504.A	ENSGT00390000018587.f.c	ENSGT00390000018587.f.d	ENSGT00390000010089	ENSGT00530000063626.a.g	ENSGT00940000160990.f	ENSGT00940000155040.a.d
Oncorhynchus	ANCESTRAL SPECIES	90	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT00940000155836.A ##11	ENSGT00940000154914.wb.b #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145.q #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331.k.a #17	ENSGT00940000158146.b.j #21	ENSGT00940000153499.b.b.d.a.b.g #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00940000158440.g.b.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #29	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881
Rainbow trout	MODERN SPECIES	22	stoml1 (ENSOMYG00000015767)	ENSOMYG00000058050	ppcdc (ENSOMYG00000023939)	ENSOMYG00000048541 #8	ints14 (ENSOMYG00000015775) #9	ENSOMYG00000051025 ##11	rab11a (ENSOMYG00000028574) #12	map2k1 (ENSOMYG00000070762) #16	rpl4 (ENSOMYG00000015672) #18	zwilch (ENSOMYG00000064330) #19	LCTL (ENSOMYG00000051376) #20	snapc5 (ENSOMYG00000026529) #17	smad6b (ENSOMYG00000035050) #21	ENSOMYG00000074334	ENSOMYG00000055253	smad3b (ENSOMYG00000040088) #22	ENSOMYG00000023824 #23	iqch (ENSOMYG00000073930) #25	skor1b (ENSOMYG00000015835) #28	ENSOMYG00000071075 #29	ENSOMYG00000054822	ENSOMYG00000064085	ENSOMYG00000049187	ENSOMYG00000052268	ENSOMYG00000076334	ENSOMYG00000037240	ENSOMYG00000057438	ENSOMYG00000015898	cracr2b (ENSOMYG00000065409)	tmem138 (ENSOMYG00000015851)	tmem258 (ENSOMYG00000015842)
Oncorhynchus_a	ANCESTRAL SPECIES	365																ENSGT00940000153499.b.b.d.a.b.g #22	ENSGT00390000007218 #23	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #29	ENSGT01030000234519.e.a.a.a.b.f.f
Chinook salmon	MODERN SPECIES	557															ENSOTSG00005017445	ENSOTSG00005017444 #22
Coho salmon	MODERN SPECIES	1	ENSOKIG00005015607	ENSOKIG00005015601	ENSOKIG00005015576	ENSOKIG00005015572	LRRC10B (ENSOKIG00005015566)	ENSOKIG00005012707	fads2 (ENSOKIG00005011983)	EPS8L2 (ENSOKIG00005011829)	TMEM80 (ENSOKIG00005011808)	ENSOKIG00005011798	tmem258 (ENSOKIG00005011783)	tmem138 (ENSOKIG00005024640)	ENSOKIG00005024630	ENSOKIG00005024624	ENSOKIG00005024593	SMAD3 (ENSOKIG00005024533) #22	aagab (ENSOKIG00005024492) #23	ENSOKIG00005024473	ENSOKIG00005024463	ENSOKIG00005024451	ENSOKIG00005024437	ENSOKIG00005024128 #29	ENSOKIG00005020649	ENSOKIG00005020544	ddb2 (ENSOKIG00005020530)	ENSOKIG00005020382	CD151 (ENSOKIG00005020322)	ENSOKIG00005020309	ENSOKIG00005020296	smad6b (ENSOKIG00005020286) #21	snapc5 (ENSOKIG00005020275) #17
Salmo	ANCESTRAL SPECIES	91	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT00940000155836.A ##11	ENSGT00940000154914.wb.b #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145.q #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00940000180676	ENSGT00940000158146.b.j #21	ENSGT00940000153499.b.b.d.a.b.g #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00940000158440.g.b.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #29	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881	ENSGT00510000048454	ENSGT00940000157760.g.b	ENSGT00440000033504.A	ENSGT00390000018587.f.c	ENSGT00390000010089	ENSGT00530000063626.a.g	ENSGT00940000160990.f	ENSGT00940000164030.j	ENSGT00940000157180.a.f
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000098010	ppcdc (ENSSSAG00000010656)	hacd3 (ENSSSAG00000009344) #8	ints14 (ENSSSAG00000106122) #9	ENSSSAG00000009435 ##11	rab11a (ENSSSAG00000083201) #12	ENSSSAG00000086055 ##13	map2k1 (ENSSSAG00000073424) #16	rpl4 (ENSSSAG00000008596) #18	zwilch (ENSSSAG00000008578) #19	LCTL (ENSSSAG00000073442) #20	snapc5 (ENSSSAG00000102443) #17	ENSSSAG00000073427	ENSSSAG00000117817	smad6 (ENSSSAG00000073418) #21	smad3b (ENSSSAG00000115090) #22	aagab (ENSSSAG00000082892) #23	iqch (ENSSSAG00000073414) #25	skor1b (ENSSSAG00000073404) #28	ENSSSAG00000073337 #29	ENSSSAG00000073314	ENSSSAG00000113149	ENSSSAG00000120598	ENSSSAG00000114635	ENSSSAG00000115130	ENSSSAG00000112218	ENSSSAG00000099032	ENSSSAG00000091330	ENSSSAG00000105869	ENSSSAG00000073286	cd151 (ENSSSAG00000111560)
River trout	MODERN SPECIES	33	ppcdc (ENSSTUG00000015044)	ENSSTUG00000015031	ENSSTUG00000015027	hacd3 (ENSSTUG00000014954) #8	ints14 (ENSSTUG00000014861) #9	ENSSTUG00000014342 ##11	RAB11B (ENSSTUG00000014285)	ENSSTUG00000014230 ##13	map2k1 (ENSSTUG00000014171) #16	rpl4 (ENSSTUG00000014130) #18	zwilch (ENSSTUG00000014067) #19	LCTL (ENSSTUG00000013900) #20	ENSSTUG00000013877	ENSSTUG00000013846	smad6b (ENSSTUG00000013843) #21	smad3b (ENSSTUG00000013733) #22	aagab (ENSSTUG00000013689) #23	iqch (ENSSTUG00000013633) #25	ENSSTUG00000009581	ddb2 (ENSSTUG00000009449)	ENSSTUG00000009248	ENSSTUG00000009190	ENSSTUG00000009180	ENSSTUG00000009161	ENSSTUG00000009155	ENSSTUG00000009141	ENSSTUG00000009072	ENSSTUG00000009031	ENSSTUG00000009017	ENSSTUG00000008959	ENSSTUG00000029350
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000155426	ENSGT00940000166194.a.a	ENSGT00940000166194.a.b	ENSGT00390000006196.k.b	ENSGT00390000006196.l	ENSGT00940000154860.a.a.d	ENSGT00940000157405.c.b	ENSGT00390000001680	ENSGT00940000155379.g.a	ENSGT00940000154234.a.d	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.h.a #22	ENSGT00940000153499.b.b.d.a.a #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a	ENSGT00950000182965.a.b.b.b	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d	ENSGT00940000155837.p.c.a	ENSGT00940000158844	ENSGT00390000006043	ENSGT00950000182907.a.b.b.b #36
Huchen	MODERN SPECIES	5853																ENSHHUG00000037049 #22
Salmoninae_a	ANCESTRAL SPECIES	566															ENSGT00940000158146.a.d #21	ENSGT00940000153499.b.b.d.a.b.h.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.a.b.h.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.a.b.h.a #22
Chinook salmon	MODERN SPECIES	157																ENSOTSG00005033086 #22
Salmo	ANCESTRAL SPECIES	524															ENSGT00940000158146.a.d #21	ENSGT00940000153499.b.b.d.a.b.h.a #22
River trout	MODERN SPECIES	209															smad6a (ENSSTUG00000030138) #21	ENSSTUG00000030116 #22	ENSSTUG00000030100 #29	ENSSTUG00000030087	skor1a (ENSSTUG00000030043) #28	ENSSTUG00000030019	MAP2K5 (ENSSTUG00000029973) #27
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.a.b.h.b #22
Huchen	MODERN SPECIES	4566																ENSHHUG00000040765 #22
Northern pike	MODERN SPECIES	18	gatd1 (ENSELUG00000023513)	cd151 (ENSELUG00000023563)	cracr2b (ENSELUG00000023578)	tmem138 (ENSELUG00000023617)	tmem258 (ENSELUG00000028457)	MYRF (ENSELUG00000023732)	TMEM80 (ENSELUG00000023746)	EPS8L2 (ENSELUG00000023804)	fads2 (ENSELUG00000023847)	LRRC10B (ENSELUG00000023860)	SYT7 (ENSELUG00000023938)	ENSELUG00000023968	ENSELUG00000024009	PNPLA2 (ENSELUG00000024038)	ENSELUG00000034022	smad3b (ENSELUG00000024171) #22	aagab (ENSELUG00000024235) #23	iqch (ENSELUG00000024287) #25	zgc:162898 (ENSELUG00000025422) #26	skor1b (ENSELUG00000024340) #28	PIAS1 (ENSELUG00000024418) #29	morf4l1 (ENSELUG00000024423)	ENSELUG00000024434	ENSELUG00000024480	ENSELUG00000024486	ENSELUG00000024494	ENSELUG00000024546	ENSELUG00000030325	smad6b (ENSELUG00000024569) #21	ENSELUG00000002781	ENSELUG00000032451
Otomorpha	ANCESTRAL SPECIES		ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454	ENSGT00930000151035.a
Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.i #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000155837	ENSGT00940000158844.l	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.i #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000155837	ENSGT00940000158844.l	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775
Channel catfish	MODERN SPECIES	23	arih1 (ENSIPUG00000020676)	c4h15orf39 (ENSIPUG00000021229)	ppcdc (ENSIPUG00000021242)	hacd3 (ENSIPUG00000021269) #8	vwa9 (ENSIPUG00000021289) #9	slc24a1 (ENSIPUG00000021316) #10	dennd4a (ENSIPUG00000021338) #11	Rab11a (ENSIPUG00000021401) #12	megf11 (ENSIPUG00000021414) ##13	map2k1 (ENSIPUG00000021471) #16	rpl4-b (ENSIPUG00000021502) #18	zwilch (ENSIPUG00000021572) #19	LCTL (ENSIPUG00000021616) #20	snapc5 (ENSIPUG00000021633) #17	SMAD6 (ENSIPUG00000021637) #21	smad3b (ENSIPUG00000021649) #22	AAGAB (ENSIPUG00000021694) #23	iqch (ENSIPUG00000021716) #25	c4h15orf61 (ENSIPUG00000021762) #26	skor1b (ENSIPUG00000022829) #28	PIAS1 (ENSIPUG00000022852) #29	morf4l1 (ENSIPUG00000022885)	ENSIPUG00000022933	gro2 (ENSIPUG00000022942)	kif23 (ENSIPUG00000022986)	paqr5a (ENSIPUG00000023028)	KBTBD4 (ENSIPUG00000023030)	rapsn (ENSIPUG00000023032)	ighmbp2 (ENSIPUG00000023036)	agk (ENSIPUG00000023045)	kiaa1147 (ENSIPUG00000023061)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.i #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000155837	ENSGT00940000158844.l	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775
Characoidei	ANCESTRAL SPECIES	30	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.i #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475.t	ENSGT01030000235447	ENSGT00940000157475.s.b	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000155837	ENSGT00940000158844.l	ENSGT00510000047881	ENSGT00990000203778
Red-bellied piranha	MODERN SPECIES		arih1 (ENSPNAG00000015135)	ENSPNAG00000015080	ppcdc (ENSPNAG00000015060)	hacd3 (ENSPNAG00000015056) #8	ints14 (ENSPNAG00000015024) #9	SLC24A1 (ENSPNAG00000003338) #10	dennd4a (ENSPNAG00000014917) #11	rab11a (ENSPNAG00000014863) #12	ENSPNAG00000014837 ##13	map2k1 (ENSPNAG00000014728) #16	rpl4 (ENSPNAG00000014698) #18	zwilch (ENSPNAG00000014620) #19	LCTL (ENSPNAG00000003168) #20	snapc5 (ENSPNAG00000014521) #17	smad6b (ENSPNAG00000014508) #21	smad3b (ENSPNAG00000003144) #22	aagab (ENSPNAG00000014473) #23	iqch (ENSPNAG00000014434) #25	zgc:162898 (ENSPNAG00000003117) #26	skor1b (ENSPNAG00000014398) #28	PIAS1 (ENSPNAG00000014367) #29	ENSPNAG00000014295	morf4l1 (ENSPNAG00000014280)	ENSPNAG00000014247	tle3a (ENSPNAG00000003051)	kif23 (ENSPNAG00000014143)	paqr5a (ENSPNAG00000014000)	ddb2 (ENSPNAG00000013976)	ENSPNAG00000013945	kbtbd4 (ENSPNAG00000002995)	rapsn (ENSPNAG00000005844)
Mexicana tetra	MODERN SPECIES	9	ENSAMXG00000003257	ppcdc (ENSAMXG00000038023)	hacd3 (ENSAMXG00000036622) #8	ints14 (ENSAMXG00000003207) #9	SLC24A1 (ENSAMXG00000003180) #10	dennd4a (ENSAMXG00000003173) #11	rab11a (ENSAMXG00000003155) #12	ENSAMXG00000003031 ##13	map2k1 (ENSAMXG00000003000) #16	rpl4 (ENSAMXG00000029678) #18	zwilch (ENSAMXG00000042209) #19	LCTL (ENSAMXG00000002915) #20	snapc5 (ENSAMXG00000035746) #17	ENSAMXG00000042016	smad6b (ENSAMXG00000002889) #21	smad3b (ENSAMXG00000002880) #22	aagab (ENSAMXG00000034247) #23	iqch (ENSAMXG00000002847) #25	zgc:162898 (ENSAMXG00000002824) #26	ENSAMXG00000039689	skor1b (ENSAMXG00000002804) #28	PIAS1 (ENSAMXG00000002784) #29	morf4l1 (ENSAMXG00000002753)	ENSAMXG00000040454	ENSAMXG00000035462	tle3a (ENSAMXG00000000547)	kif23 (ENSAMXG00000000541)	paqr5a (ENSAMXG00000034830)	ddb2 (ENSAMXG00000000525)	ENSAMXG00000033486	kbtbd4 (ENSAMXG00000029227)
Electric eel	MODERN SPECIES	418															smad6b (ENSEEEG00000009587) #21	smad3b (ENSEEEG00000009600) #22	aagab (ENSEEEG00000009726) #23	iqch (ENSEEEG00000009734) #25	zgc:162898 (ENSEEEG00000009736) #26	skor1b (ENSEEEG00000009737) #28	PIAS1 (ENSEEEG00000009745) #29	morf4l1 (ENSEEEG00000009806)	ENSEEEG00000010279	TLE3 (ENSEEEG00000010301)	ENSEEEG00000010685	kif23 (ENSEEEG00000010714)	paqr5a (ENSEEEG00000011027)	ddb2 (ENSEEEG00000011028)	kbtbd4 (ENSEEEG00000011030)	rapsn (ENSEEEG00000011031)
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.A.b ##13	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369.a #20	ENSGT00390000010331 #17	ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.a.b.i #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.b #29	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000155837	ENSGT00940000158844.l	ENSGT00510000047881	ENSGT00940000158775	ENSGT00390000016785
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	74	ENSGT00940000155744.g.b	ENSGT00940000169185.b	ENSGT00440000038107.p	ENSGT00530000062962.b.a.f.b #8	ENSGT00390000009486.f #9	ENSGT01030000234532.B.e.b.f.a #10	ENSGT00940000155836.B.d #11	ENSGT00940000154914.ub #12	ENSGT00940000155333.A.b.a ##13	ENSGT00940000153487.b.b.t #16	ENSGT00390000018145.e #18	ENSGT00390000013696 #19	ENSGT00940000157369.a.d #20	ENSGT00390000010331.m #17	ENSGT00940000158146.b.e #21	ENSGT00940000153499.b.b.d.a.b.i.a #22	ENSGT00390000007218.r #23	ENSGT00390000008908.b #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b.b #28	ENSGT01030000234539.a.a.b.a.b.b.a #29	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000235447	ENSGT00940000157475.s.b.b	ENSGT01030000234519.e.b.j.b.a.b
Goldfish	MODERN SPECIES	9	arih1 (ENSCARG00000011916)	ENSCARG00000011988	ppcdc (ENSCARG00000011991)	hacd3 (ENSCARG00000012002) #8	ints14 (ENSCARG00000012147) #9	SLC24A1 (ENSCARG00000012194) #10	dennd4a (ENSCARG00000012263) #11	rab11a (ENSCARG00000013410) #12	ENSCARG00000013448 ##13	map2k1 (ENSCARG00000013618) #16	rpl4 (ENSCARG00000013743) #18	zwilch (ENSCARG00000013771) #19	LCTL (ENSCARG00000013798) #20	snapc5 (ENSCARG00000013818) #17	smad6b (ENSCARG00000013826) #21	smad3b (ENSCARG00000013852) #22	aagab (ENSCARG00000013875) #23	iqch (ENSCARG00000013907) #25	zgc:162898 (ENSCARG00000013951) #26	skor1b (ENSCARG00000013956) #28	PIAS1 (ENSCARG00000013991) #29	ENSCARG00000014119	morf4l1 (ENSCARG00000014135)	ENSCARG00000014215	tle3a (ENSCARG00000014265)	ENSCARG00000015092	kif23 (ENSCARG00000015149)	paqr5a (ENSCARG00000016813)	ddb2 (ENSCARG00000016846)	kbtbd4 (ENSCARG00000016868)	rapsn (ENSCARG00000016874)
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00940000155744.g.b	ENSGT00940000169185.b	ENSGT00440000038107.p	ENSGT00530000062962.b.a.f.b #8	ENSGT00390000009486.f #9	ENSGT01030000234532.B.e.b.f.a #10	ENSGT00940000155836.B.d #11	ENSGT00940000154914.ub #12	ENSGT00940000155333.A.b.a ##13	ENSGT00940000153487.b.b.t #16	ENSGT00390000018145.e #18	ENSGT00390000013696.e #19	ENSGT00940000157369.a.d #20	ENSGT00390000010331.m #17	ENSGT00940000158146.b.e #21	ENSGT00940000153499.b.b.d.a.b.i.a #22	ENSGT00390000007218.r #23	ENSGT00390000008908.b #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b.b #28	ENSGT01030000234539.a.a.b.a.b.b.a #29	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000235447.a	ENSGT00940000157475.s.b.b	ENSGT01030000234519.e.b.j.b.a.b	ENSGT00940000155837.q	ENSGT00510000047881.e	ENSGT00940000158775.i	ENSGT00390000016785.f	ENSGT00930000151035.a.a	ENSGT00940000154961.p
Common carp reference	MODERN SPECIES	19	arih1 (ENSCCRG00000005206)	ENSCCRG00000071734	ppcdc (ENSCCRG00000072999)	hacd3 (ENSCCRG00000047136) #8	ints14 (ENSCCRG00000017792) #9	SLC24A1 (ENSCCRG00000009282) #10	ENSCCRG00000072431	dennd4a (ENSCCRG00000009528) #11	rab11a (ENSCCRG00000009402) #12	ENSCCRG00000073950 ##13	map2k1 (ENSCCRG00000077344) #16	zwilch (ENSCCRG00000034439) #19	LCTL (ENSCCRG00000017070) #20	snapc5 (ENSCCRG00000078719) #17	smad6b (ENSCCRG00000017061) #21	smad3b (ENSCCRG00000067387) #22	aagab (ENSCCRG00000016912) #23	iqch (ENSCCRG00000077345) #25	skor1b (ENSCCRG00000014176) #28	PIAS1 (ENSCCRG00000030976) #29	morf4l1 (ENSCCRG00000043359)	ENSCCRG00000076672	tle3a (ENSCCRG00000030091)	kif23 (ENSCCRG00000015859)	ddb2 (ENSCCRG00000061260)	kbtbd4 (ENSCCRG00000057703)	rapsn (ENSCCRG00000018870)	ENSCCRG00000019411	ighmbp2 (ENSCCRG00000068382)	agk (ENSCCRG00000019050)	dennd11 (ENSCCRG00000018949)
Golden-line barbel	MODERN SPECIES	224			ppcdc (ENSSGRG00000053835)	hacd3 (ENSSGRG00000053825) #8	ints14 (ENSSGRG00000053784) #9	SLC24A1 (ENSSGRG00000053777) #10	dennd4a (ENSSGRG00000053530) #11	rab11a (ENSSGRG00000053474) #12	ENSSGRG00000053461 ##13	map2k1 (ENSSGRG00000053371) #16	rpl4 (ENSSGRG00000053329) #18	zwilch (ENSSGRG00000053327) #19	LCTL (ENSSGRG00000053324) #20	snapc5 (ENSSGRG00000053323) #17	smad6b (ENSSGRG00000053322) #21	ENSSGRG00000053321 #22	aagab (ENSSGRG00000053318) #23	iqch (ENSSGRG00000053315) #25	zgc:162898 (ENSSGRG00000053314) #26	ENSSGRG00000053214 #29	ENSSGRG00000053206	morf4l1 (ENSSGRG00000053205)	ENSSGRG00000053204	tle3a (ENSSGRG00000051652)	ENSSGRG00000051635	kif23 (ENSSGRG00000051628)	ddb2 (ENSSGRG00000051625)	kbtbd4 (ENSSGRG00000051617)	rapsn (ENSSGRG00000051616)	ENSSGRG00000051614	agk (ENSSGRG00000051590)
Cyprininae	ANCESTRAL SPECIES	123	ENSGT00390000015052.b	ENSGT00940000155744.g.a	ENSGT00940000169185.a	ENSGT00440000038107.o	ENSGT00530000062962.b.a.f.a #8	ENSGT00390000009486.e #9	ENSGT01030000234532.B.e.b.f.b #10	ENSGT00940000155836.B.c #11	ENSGT00940000154914.tb #12	ENSGT00940000155333.A.b.b ##13	ENSGT00940000153487.b.b.s #16	ENSGT00390000018145.f #18	ENSGT00940000157369.a.c #20	ENSGT00390000010331.n #17	ENSGT00940000158146.b.f #21	ENSGT00940000153499.b.b.d.a.b.i.b #22	ENSGT00390000007218.q #23	ENSGT00390000008908.a #25
Goldfish	MODERN SPECIES	37	arl2bp (ENSCARG00000064261)	arih1 (ENSCARG00000063977)	ENSCARG00000063954	ppcdc (ENSCARG00000063932)	hacd3 (ENSCARG00000063827) #8	ints14 (ENSCARG00000063746) #9	SLC24A1 (ENSCARG00000063727) #10	dennd4a (ENSCARG00000062471) #11	rab11a (ENSCARG00000062368) #12	ENSCARG00000058612 ##13	map2k1 (ENSCARG00000057706) #16	rpl4 (ENSCARG00000057625) #18	LCTL (ENSCARG00000057492) #20	snapc5 (ENSCARG00000057463) #17	smad6b (ENSCARG00000057432) #21	smad3b (ENSCARG00000057166) #22	aagab (ENSCARG00000057137) #23	ENSCARG00000057132	skor1b (ENSCARG00000057106) #28	ENSCARG00000057077 #29	ENSCARG00000057062	ric8b (ENSCARG00000057023)	rfx4 (ENSCARG00000056887)	mlycd (ENSCARG00000056868)	clns1a (ENSCARG00000056853)	aqp11 (ENSCARG00000056843)	pak1 (ENSCARG00000056359)	GDPD4 (ENSCARG00000056300)	ENSCARG00000056175	ompa (ENSCARG00000056164)	capn5a (ENSCARG00000055845)
Cyprininae_a	ANCESTRAL SPECIES	131	ENSGT00940000155744.g.a	ENSGT00940000169185.a	ENSGT00440000038107.o	ENSGT00530000062962.b.a.f.a #8	ENSGT00390000009486.e #9	ENSGT01030000234532.B.e.b.f.b #10	ENSGT00940000155836.B.c #11	ENSGT00940000154914.tb #12	ENSGT00940000155333.A.b.b ##13	ENSGT00940000153487.b.b.s #16	ENSGT00390000018145.f #18	ENSGT00390000013696.f #19	ENSGT00940000157369.a.c #20	ENSGT00390000010331.n #17	ENSGT00940000158146.b.f #21	ENSGT00940000153499.b.b.d.a.b.i.b #22	ENSGT00390000007218.q #23	ENSGT00390000008908.a #25
Common carp reference	MODERN SPECIES	9	arl2bp (ENSCCRG00000005183)	arih1 (ENSCCRG00000025952)	ENSCCRG00000081007	ppcdc (ENSCCRG00000018299)	hacd3 (ENSCCRG00000017852) #8	ints14 (ENSCCRG00000047151) #9	SLC24A1 (ENSCCRG00000066083) #10	dennd4a (ENSCCRG00000020231) #11	rab11a (ENSCCRG00000059058) #12	ENSCCRG00000009371 ##13	map2k1 (ENSCCRG00000035016) #16	rpl4 (ENSCCRG00000034465) #18	LCTL (ENSCCRG00000034940) #20	snapc5 (ENSCCRG00000076911) #17	smad6b (ENSCCRG00000028531) #21	smad3b (ENSCCRG00000014185) #22	aagab (ENSCCRG00000014234) #23	iqch (ENSCCRG00000014287) #25	ENSCCRG00000064665	skor1b (ENSCCRG00000043233) #28	PIAS1 (ENSCCRG00000043261) #29	ENSCCRG00000031056	morf4l1 (ENSCCRG00000031057)	ENSCCRG00000064433	ENSCCRG00000043403	tle3a (ENSCCRG00000029847)	kif23 (ENSCCRG00000004087)	ddb2 (ENSCCRG00000018879)	kbtbd4 (ENSCCRG00000019417)	rapsn (ENSCCRG00000019414)	ighmbp2 (ENSCCRG00000018868)
Golden-line barbel	MODERN SPECIES	54	arih1 (ENSSGRG00000029910)	ENSSGRG00000029906	ppcdc (ENSSGRG00000029905)	hacd3 (ENSSGRG00000029894) #8	ints14 (ENSSGRG00000029760) #9	SLC24A1 (ENSSGRG00000029751) #10	dennd4a (ENSSGRG00000028490) #11	rab11a (ENSSGRG00000028469) #12	ENSSGRG00000028343 ##13	map2k1 (ENSSGRG00000026412) #16	rpl4 (ENSSGRG00000026237) #18	zwilch (ENSSGRG00000026228) #19	LCTL (ENSSGRG00000026226) #20	snapc5 (ENSSGRG00000026223) #17	smad6b (ENSSGRG00000026221) #21	smad3b (ENSSGRG00000025385) #22	aagab (ENSSGRG00000025352) #23	iqch (ENSSGRG00000025341) #25	zgc:162898 (ENSSGRG00000025335) #26	skor1b (ENSSGRG00000025333) #28	ENSSGRG00000025332 #29	PIAS1 (ENSSGRG00000025330) #29	morf4l1 (ENSSGRG00000025132)	ENSSGRG00000025130	tle3a (ENSSGRG00000022755)	kif23 (ENSSGRG00000021128)	ddb2 (ENSSGRG00000021066)	kbtbd4 (ENSSGRG00000021064)	rapsn (ENSSGRG00000021063)	agk (ENSSGRG00000021061)	ighmbp2 (ENSSGRG00000021054)
Zebrafish	MODERN SPECIES	9	ppcdc (ENSDARG00000033020)	hacd3 (ENSDARG00000016038) #8	ints14 (ENSDARG00000041429) #9	SLC24A1 (ENSDARG00000041431) #10	dennd4a (ENSDARG00000062721) #11	ENSDARG00000092535	ENSDARG00000069189	rab11a (ENSDARG00000041450) #12	ENSDARG00000062686 ##13	map2k1 (ENSDARG00000007825) #16	rpl4 (ENSDARG00000041182) #18	zwilch (ENSDARG00000057100) #19	LCTL (ENSDARG00000016337) #20	snapc5 (ENSDARG00000062476) #17	smad6b (ENSDARG00000031763) #21	smad3b (ENSDARG00000010207) #22	aagab (ENSDARG00000041170) #23	iqch (ENSDARG00000015476) #25	C18H15orf61 (ENSDARG00000111588) #26	skor1b (ENSDARG00000062448) #28	PIAS1 (ENSDARG00000062445) #29	ENSDARG00000069246	morf4l1 (ENSDARG00000041155)	ENSDARG00000069250	tle3a (ENSDARG00000002787)	kif23 (ENSDARG00000014943)	paqr5a (ENSDARG00000041145)	ddb2 (ENSDARG00000041140)	kbtbd4 (ENSDARG00000069271)	rapsn (ENSDARG00000041133)	ighmbp2 (ENSDARG00000069274)
Otophysi	ANCESTRAL SPECIES	150						ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.j #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a
Characiphysae	ANCESTRAL SPECIES	27	ENSGT00530000063023.A.a	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764.`b #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.j #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a
Channel catfish	MODERN SPECIES	19	dpy19l3 (ENSIPUG00000020870)	ZNF507 (ENSIPUG00000020853)	TSHZ3 (ENSIPUG00000020845)	znf536 (ENSIPUG00000020834)	nr1h3 (ENSIPUG00000019883)	ENSIPUG00000019875	madd (ENSIPUG00000019744)	Bbox1 (ENSIPUG00000019724)	fibin (ENSIPUG00000019720)	muc15 (ENSIPUG00000019713)	dis3l (ENSIPUG00000019669) #14	tipin (ENSIPUG00000019666) #15	crybgx (ENSIPUG00000019649)	LCTL (ENSIPUG00000019586) #20	smad6a (ENSIPUG00000019564) #21	SMAD3 (ENSIPUG00000019525) #22	map2k5 (ENSIPUG00000019485) #27	skor1a (ENSIPUG00000019469) #28	PIAS1 (ENSIPUG00000019429) #29	ENSIPUG00000019422	uaca (ENSIPUG00000019360)	tle3b (ENSIPUG00000019127)	paqr5b (ENSIPUG00000019056)	Glce (ENSIPUG00000019029)	anp32a (ENSIPUG00000019014) #36	coro2b (ENSIPUG00000018930) #35	itga11 (ENSIPUG00000018854) #34	mns1 (ENSIPUG00000018825)	tph1b (ENSIPUG00000018783)	Kcnc1 (ENSIPUG00000018769)	cd81a (ENSIPUG00000018729)
Characiphysae_b	ANCESTRAL SPECIES	28	ENSGT00530000063023.A.a	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764.`b #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.j #22	ENSGT00940000157505 #27	ENSGT00940000158440.h #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a
Characoidei	ANCESTRAL SPECIES	24	ENSGT00530000063023.A.a	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764.`b #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.j #22	ENSGT00940000157505 #27	ENSGT00940000158440.h #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a
Red-bellied piranha	MODERN SPECIES	92					ZNF536 (ENSPNAG00000014223)	nr1h3 (ENSPNAG00000014241)	MADD (ENSPNAG00000014316)	bbox1 (ENSPNAG00000014337)	fibinb (ENSPNAG00000014347)	ENSPNAG00000014354	dis3l (ENSPNAG00000014400) #14	tipin (ENSPNAG00000014414) #15	lctla (ENSPNAG00000003140) #20	crybgx (ENSPNAG00000014505)	smad6a (ENSPNAG00000014514) #21	smad3a (ENSPNAG00000014544) #22	map2k5 (ENSPNAG00000014566) #27	ENSPNAG00000014587 #28	PIAS1 (ENSPNAG00000003192) #29	ENSPNAG00000014629	UACA (ENSPNAG00000003210)	tle3b (ENSPNAG00000014802)	paqr5b (ENSPNAG00000003288)	glceb (ENSPNAG00000003298)	anp32a (ENSPNAG00000014867) #36	CORO2B (ENSPNAG00000014897) #35	itga11a (ENSPNAG00000003319) #34	mns1 (ENSPNAG00000003324)	tph1b (ENSPNAG00000014954)	kcnc1a (ENSPNAG00000014969)	cd81a (ENSPNAG00000015010)
Mexicana tetra	MODERN SPECIES	47	ZNF507 (ENSAMXG00000006289)	tshz3b (ENSAMXG00000006284)	ZNF536 (ENSAMXG00000006281)	ENSAMXG00000033278	nr1h3 (ENSAMXG00000006277)	MADD (ENSAMXG00000006269)	bbox1 (ENSAMXG00000006257)	fibinb (ENSAMXG00000025955)	ENSAMXG00000006252	dis3l (ENSAMXG00000006220) #14	tipin (ENSAMXG00000035999) #15	lctla (ENSAMXG00000006194) #20	crybgx (ENSAMXG00000006190)	ENSAMXG00000029211	smad6a (ENSAMXG00000006188) #21	smad3a (ENSAMXG00000006181) #22	map2k5 (ENSAMXG00000006170) #27	ENSAMXG00000006162 #28	PIAS1 (ENSAMXG00000006151) #29	ENSAMXG00000025954	UACA (ENSAMXG00000006145)
Electric eel	MODERN SPECIES	82	bbox1 (ENSEEEG00000021039)	MADD (ENSEEEG00000020444)	nr1h3 (ENSEEEG00000020215)	ZNF536 (ENSEEEG00000020210)	tshz3b (ENSEEEG00000020209)	ZNF507 (ENSEEEG00000020208)	DPY19L3 (ENSEEEG00000020207)	ENSEEEG00000020206	ENSEEEG00000020205	cpeb1b (ENSEEEG00000020204)	rbpms2b (ENSEEEG00000020201)	tipin (ENSEEEG00000020200) #15	lctla (ENSEEEG00000020199) #20	ENSEEEG00000020190	smad6a (ENSEEEG00000020182) #21	smad3a (ENSEEEG00000020177) #22	map2k5 (ENSEEEG00000020174) #27	skor1a (ENSEEEG00000020172) #28	PIAS1 (ENSEEEG00000020167) #29	ENSEEEG00000020166	UACA (ENSEEEG00000020165)
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000159190	ENSGT00940000160212	ENSGT01050000244970.b.j.a	ENSGT00390000018333	ENSGT00940000157859.a.a #30	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.a.b.j #22	ENSGT00940000157505.d #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b #36	ENSGT00940000158689 #35	ENSGT00940000155465.i #34	ENSGT00940000154757	ENSGT00940000163443.m.a	ENSGT00730000111210	ENSGT00950000182885.A.a.e
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	26	ENSGT00390000007623.c.f	ENSGT01030000235035.b	ENSGT00530000063106.B.c #14	ENSGT00390000005764.z #15	ENSGT00940000157369.b.b #20	ENSGT00940000165890.h	ENSGT00940000158146.a.a #21	ENSGT00940000153499.b.b.d.a.b.j.b #22	ENSGT00530000063582.b.k	ENSGT00390000007623.c.e	ENSGT01030000235035.a	ENSGT00530000063106.B.d #14	ENSGT00940000157369.b.a #20	ENSGT00940000165890.g	ENSGT00940000158146.a.b #21	ENSGT00940000153499.b.b.d.a.b.j.a #22	ENSGT00940000157505.d #27	ENSGT00940000158440.g.a.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.b #29	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a.c	ENSGT01030000234519.e.b.j.b.b.b	ENSGT00940000158844.k.b	ENSGT00390000006043.o.b	ENSGT00940000158440.g.a.b #28	ENSGT01030000234539.a.a.b.a.b.a.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a.d	ENSGT01030000234519.e.b.j.b.b.a	ENSGT00940000158844.k.a	ENSGT00390000006043.o.a
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT01050000244970.b.j.a.a	ENSGT00390000018333.h	ENSGT00940000157859.a.a.b #30	ENSGT00400000022240.lc.b #31	ENSGT00400000022240.lc.a.a.a #31	ENSGT00940000159068.d	ENSGT00940000156718.e	ENSGT00530000063582.b.k	ENSGT00390000007623.c.e	ENSGT01030000235035.a	ENSGT00390000005764.y.a #15	ENSGT00530000063106.B.d #14	ENSGT00940000157369.b.a #20	ENSGT00940000165890.g	ENSGT00940000158146.a.b #21	ENSGT00940000153499.b.b.d.a.b.j.a #22	ENSGT00940000157505.d #27	ENSGT00940000158440.g.a.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.b #29	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a.c	ENSGT01030000234519.e.b.j.b.b.b	ENSGT00940000158844.k.b	ENSGT00390000006043.o.b	ENSGT00950000182907.a.b.b.b.k #36	ENSGT00940000158689.eb.a #35	ENSGT00940000155465.i.b #34	ENSGT00940000163443.m.a.a.a	ENSGT00730000111210.e.b	ENSGT00950000182885.A.a.e.a	ENSGT00940000156912.c.a.f
Common carp reference	MODERN SPECIES	6	slc9a5 (ENSCCRG00000017800)	ENSCCRG00000053616	ENSCCRG00000079445	tex9 (ENSCCRG00000038240)	cln6a (ENSCCRG00000038243) #31	nr1h3 (ENSCCRG00000038214)	ENSCCRG00000017716	bbox1 (ENSCCRG00000019296)	fibinb (ENSCCRG00000060452)	ENSCCRG00000082862	tipin (ENSCCRG00000019302) #15	crybgx (ENSCCRG00000051990)	lctla (ENSCCRG00000050348) #20	smad6a (ENSCCRG00000051993) #21	ENSCCRG00000074909	smad3a (ENSCCRG00000064022) #22	map2k5 (ENSCCRG00000079416) #27	skor1a (ENSCCRG00000016747) #28	PIAS1 (ENSCCRG00000074323) #29	ENSCCRG00000012448	ENSCCRG00000013336	tle3b (ENSCCRG00000013442)	paqr5b (ENSCCRG00000015743)	glceb (ENSCCRG00000039429)	anp32a (ENSCCRG00000057989) #36	CORO2B (ENSCCRG00000035947) #35	itga11a (ENSCCRG00000042314) #34	ENSCCRG00000032576	mns1 (ENSCCRG00000043422)	tph1b (ENSCCRG00000073694)	kcnc1a (ENSCCRG00000062348)
Golden-line barbel	MODERN SPECIES	463	slc9a5 (ENSSGRG00000041874)	FHOD1 (ENSSGRG00000041694)	RFX7 (ENSSGRG00000041690)	tex9 (ENSSGRG00000041689)	calml4a (ENSSGRG00000041686) #30	cln6a (ENSSGRG00000041678) #31	nr1h3 (ENSSGRG00000041581)	MADD (ENSSGRG00000036092)	bbox1 (ENSSGRG00000035980)	fibinb (ENSSGRG00000035979)	ENSSGRG00000035978	dis3l (ENSSGRG00000035956) #14	lctla (ENSSGRG00000035931) #20	crybgx (ENSSGRG00000035930)	smad6a (ENSSGRG00000035929) #21	smad3a (ENSSGRG00000035769) #22	map2k5 (ENSSGRG00000035763) #27	skor1a (ENSSGRG00000035761) #28	PIAS1 (ENSSGRG00000035745) #29	ENSSGRG00000035743	UACA (ENSSGRG00000035741)	tle3b (ENSSGRG00000035215)	paqr5b (ENSSGRG00000035203)	glceb (ENSSGRG00000035201)	anp32a (ENSSGRG00000035200) #36	CORO2B (ENSSGRG00000035199) #35	itga11a (ENSSGRG00000035197) #34	ENSSGRG00000035195	mns1 (ENSSGRG00000035193)	tph1b (ENSSGRG00000035188)	kcnc1a (ENSSGRG00000035187)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3320																smad3a (ENSCARG00000051116) #22	map2k5 (ENSCARG00000050958) #27	skor1a (ENSCARG00000050923) #28
Goldfish	MODERN SPECIES	25	nrn1lb (ENSCARG00000033179)	ENSCARG00000033197	ccdc102a (ENSCARG00000033213)	DOK4 (ENSCARG00000033234)	adgrg1 (ENSCARG00000033254)	slc7a6 (ENSCARG00000033512)	slc7a6os (ENSCARG00000034612)	tmem9b (ENSCARG00000034625)	dennd2b (ENSCARG00000034680)	bbox1 (ENSCARG00000035601)	fibinb (ENSCARG00000035622)	ENSCARG00000035631	tipin (ENSCARG00000035645) #15	crybgx (ENSCARG00000035878)	smad6a (ENSCARG00000035887) #21	smad3a (ENSCARG00000035926) #22	ENSCARG00000036461	mns1 (ENSCARG00000036477)	ENSCARG00000036525	itga11a (ENSCARG00000036622) #34	CORO2B (ENSCARG00000036888) #35	anp32a (ENSCARG00000038207) #36	glceb (ENSCARG00000038379)	paqr5b (ENSCARG00000038406)	CORO2B (ENSCARG00000038715) #35	anp32a (ENSCARG00000040449) #36	UACA (ENSCARG00000040575)	PIAS1 (ENSCARG00000040731) #29	ENSCARG00000040854 #29	cldn15a (ENSCARG00000040864)	fis1 (ENSCARG00000040876)
Cyprininae	ANCESTRAL SPECIES	26	ENSGT00940000160212.eb	ENSGT01050000244970.b.j.a.b	ENSGT00390000018333.g	ENSGT00940000157859.a.a.a #30	ENSGT00400000022240.lc.a.b #31	ENSGT00940000159068.c	ENSGT00940000156718.f	ENSGT00530000063582.b.l	ENSGT00390000007623.c.f	ENSGT01030000235035.b	ENSGT00530000063106.B.c #14	ENSGT00390000005764.z #15	ENSGT00940000157369.b.b #20	ENSGT00940000165890.h	ENSGT00940000158146.a.a #21	ENSGT00940000153499.b.b.d.a.b.j.b #22	ENSGT00530000063582.b.k	ENSGT00390000007623.c.e	ENSGT01030000235035.a	ENSGT00530000063106.B.d #14	ENSGT00940000157369.b.a #20	ENSGT00940000165890.g	ENSGT00940000158146.a.b #21	ENSGT00940000153499.b.b.d.a.b.j.a #22	ENSGT00940000157505.d #27	ENSGT00940000158440.g.a.a #28	ENSGT01030000234539.a.a.b.a.b.a.a.b #29	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a.c	ENSGT01030000234519.e.b.j.b.b.b	ENSGT00940000158844.k.b
Goldfish	MODERN SPECIES	47	slc9a5 (ENSCARG00000022557)	FHOD1 (ENSCARG00000022177)	RFX7 (ENSCARG00000022134)	tex9 (ENSCARG00000067072)	calml4a (ENSCARG00000067058) #30	cln6a (ENSCARG00000067018) #31	nr1h3 (ENSCARG00000066920)	MADD (ENSCARG00000064670)	bbox1 (ENSCARG00000064590)	fibinb (ENSCARG00000064559)	ENSCARG00000064543	dis3l (ENSCARG00000064490) #14	lctla (ENSCARG00000064435) #20	crybgx (ENSCARG00000064411)	smad6a (ENSCARG00000064397) #21	smad3a (ENSCARG00000064036) #22	skor1a (ENSCARG00000064004) #28	PIAS1 (ENSCARG00000063946) #29	ENSCARG00000063913	UACA (ENSCARG00000063754)	tle3b (ENSCARG00000059297)	paqr5b (ENSCARG00000059047)	glceb (ENSCARG00000059036)	anp32a (ENSCARG00000058959) #36	CORO2B (ENSCARG00000058579) #35	itga11a (ENSCARG00000058212) #34	ENSCARG00000058026	mns1 (ENSCARG00000057934)	tph1b (ENSCARG00000057626)	kcnc1a (ENSCARG00000057523)	cd81a (ENSCARG00000057440)
Cyprininae_a	ANCESTRAL SPECIES	77	ENSGT00940000160212.eb	ENSGT01050000244970.b.j.a.b	ENSGT00390000018333.g	ENSGT00940000157859.a.a.a #30	ENSGT00400000022240.lc.a.b #31	ENSGT00940000159068.c	ENSGT00940000156718.f	ENSGT00530000063582.b.l	ENSGT00390000007623.c.f	ENSGT01030000235035.b	ENSGT00530000063106.B.c #14	ENSGT00390000005764.z #15	ENSGT00940000157369.b.b #20	ENSGT00940000165890.h	ENSGT00940000158146.a.a #21	ENSGT00940000153499.b.b.d.a.b.j.b #22	ENSGT00940000157505.c #27	ENSGT00940000158440.g.a.b #28	ENSGT01030000234539.a.a.b.a.b.a.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a.d	ENSGT01030000234519.e.b.j.b.b.a	ENSGT00940000158844.k.a	ENSGT00390000006043.o.a	ENSGT00950000182907.a.b.b.b.l #36	ENSGT00940000158689.eb.b #35	ENSGT00940000155465.i.a #34	ENSGT00730000111210.e.a.a.a	ENSGT00940000154757.tb.a	ENSGT00940000163443.m.a.a.b	ENSGT00730000111210.e.a.b
Common carp reference	MODERN SPECIES		slc9a5 (ENSCCRG00000018485)	ENSCCRG00000019313	ENSCCRG00000073027	tex9 (ENSCCRG00000019270)	cln6a (ENSCCRG00000019275) #31	nr1h3 (ENSCCRG00000038257)	ENSCCRG00000038221	bbox1 (ENSCCRG00000051928)	fibinb (ENSCCRG00000076312)	ENSCCRG00000051933	dis3l (ENSCCRG00000051944) #14	tipin (ENSCCRG00000051973) #15	lctla (ENSCCRG00000051980) #20	crybgx (ENSCCRG00000001610)	smad6a (ENSCCRG00000031892) #21	smad3a (ENSCCRG00000075589) #22	map2k5 (ENSCCRG00000000607) #27	skor1a (ENSCCRG00000000576) #28	PIAS1 (ENSCCRG00000070797) #29	ENSCCRG00000062231	ENSCCRG00000013370	tle3b (ENSCCRG00000030981)	paqr5b (ENSCCRG00000071186)	glceb (ENSCCRG00000046460)	anp32a (ENSCCRG00000070700) #36	CORO2B (ENSCCRG00000079311) #35	itga11a (ENSCCRG00000042656) #34	ENSCCRG00000060873	ENSCCRG00000065226	ENSCCRG00000042251	ENSCCRG00000019224
Golden-line barbel	MODERN SPECIES	874	FHOD1 (ENSSGRG00000012362)	RFX7 (ENSSGRG00000012361)	tex9 (ENSSGRG00000012360)	calml4a (ENSSGRG00000012358) #30	cln6a (ENSSGRG00000012357) #31	nr1h3 (ENSSGRG00000012280)	MADD (ENSSGRG00000004025)	bbox1 (ENSSGRG00000003510)	fibinb (ENSSGRG00000003506)	ENSSGRG00000003501	tipin (ENSSGRG00000003488) #15	dis3l (ENSSGRG00000003440) #14	lctla (ENSSGRG00000002952) #20	crybgx (ENSSGRG00000002921)	smad6a (ENSSGRG00000002916) #21	smad3a (ENSSGRG00000001460) #22	MAP2K5 (ENSSGRG00000001326) #27	skor1a (ENSSGRG00000001317) #28	PIAS1 (ENSSGRG00000001304) #29	ENSSGRG00000001293	UACA (ENSSGRG00000001249)
Zebrafish	MODERN SPECIES	22	calml4a (ENSDARG00000075800) #30	cln6a (ENSDARG00000077584) #31	ENSDARG00000077910	ENSDARG00000105574	nr1h3 (ENSDARG00000098439)	MADD (ENSDARG00000003495)	bbox1 (ENSDARG00000036135)	ENSDARG00000111781	fibinb (ENSDARG00000087196)	ENSDARG00000105641	dis3l (ENSDARG00000053200) #14	tipin (ENSDARG00000036136) #15	lctla (ENSDARG00000036139) #20	crybgx (ENSDARG00000036140)	smad6a (ENSDARG00000053209) #21	smad3a (ENSDARG00000036096) #22	map2k5 (ENSDARG00000011851) #27	skor1a (ENSDARG00000069030) #28	PIAS1 (ENSDARG00000036094) #29	ENSDARG00000069028	UACA (ENSDARG00000060238)	tle3b (ENSDARG00000069006)	paqr5b (ENSDARG00000052688)	glceb (ENSDARG00000068981)	anp32a (ENSDARG00000006487) #36	CORO2B (ENSDARG00000079440) #35	itga11a (ENSDARG00000036086) #34	ITLN1 (ENSDARG00000095082)	ENSDARG00000105568	itln2 (ENSDARG00000036084)	ENSDARG00000093796
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b.f #10	ENSGT01030000234532.B.e.b.e #10	ENSGT00940000155836.B #11	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b	ENSGT00940000159258.d	ENSGT00980000198641	ENSGT00940000155333.A.a ##13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.b #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b	ENSGT00940000158440.h #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Guppy	DUPLICATION
Guppy	MODERN SPECIES	394																ENSPREG00000007081 #22
Guppy	MODERN SPECIES	364																ENSPREG00000006628 #22
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Mummichog	MODERN SPECIES	2238														ENSFHEG00000005664	ENSFHEG00000005643	ENSFHEG00000005631 #22	ENSFHEG00000005614 #22	skor2 (ENSFHEG00000000144)	ier3ip1 (ENSFHEG00000005580)	hdhd2 (ENSFHEG00000005535)	katnal2 (ENSFHEG00000005508)	sigmar1 (ENSFHEG00000005490)	galt (ENSFHEG00000005443)	cntfr (ENSFHEG00000005356)	tmem267 (ENSFHEG00000005343)	ENSFHEG00000005336	si:busm1-57f23.1 (ENSFHEG00000000833)	rassf6 (ENSFHEG00000005305)	MUSK (ENSFHEG00000005264)	lpar1 (ENSFHEG00000005217)	ENSFHEG00000005179
Otomorpha	ANCESTRAL SPECIES	327						ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000157369.b #20	ENSGT00940000165890	ENSGT00940000158146.a #21	ENSGT00940000153499.b.b.d.b #22	ENSGT00940000157505 #27	ENSGT00940000158440.g.a #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234534.B.a.b.a.b	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043.o
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.d.b #22
Golden-line barbel	MODERN SPECIES	351	zfand5b (ENSSGRG00000048584)	erbin (ENSSGRG00000048362)	nln (ENSSGRG00000048263)	sgtb (ENSSGRG00000048242)	trappc13 (ENSSGRG00000047992)	pum3 (ENSSGRG00000047957)	ENSSGRG00000047953	vldlr (ENSSGRG00000046000)	ENSSGRG00000045986	ENSSGRG00000045985	spp1 (ENSSGRG00000045984)	ENSSGRG00000045982	CLDN23 (ENSSGRG00000045981)	cldn23.1 (ENSSGRG00000045980)	ENSSGRG00000045978	ENSSGRG00000045974 #22	dpt (ENSSGRG00000045971)	atp1b1a (ENSSGRG00000045970)	nme7 (ENSSGRG00000045902)	zgc:172121 (ENSSGRG00000045898)	TMEM131 (ENSSGRG00000045544)	actl6a (ENSSGRG00000045146)	mrpl47 (ENSSGRG00000045138)	usp13 (ENSSGRG00000045083)	PEX5L (ENSSGRG00000045080)
Goldfish	MODERN SPECIES	94															ENSCARG00000043539	ENSCARG00000043736 #22
Clupeiformes	ANCESTRAL SPECIES	358															ENSGT00940000158146.b #21	ENSGT00940000153499.b.b.d.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000158440.g.b #28	ENSGT01030000234539.a.a.b.a.b.a.a #29	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00940000158440.h #28	ENSGT01030000234539.a.a.b.a.b.a.b #29	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b	ENSGT01030000234519.e.b.i.a
Atlantic herring	MODERN SPECIES	19	ints14 (ENSCHAG00000003814) #9	SLC24A1 (ENSCHAG00000003677) #10	dennd4a (ENSCHAG00000003270) #11	rab11a (ENSCHAG00000002433) #12	ENSCHAG00000000584 ##13	map2k1 (ENSCHAG00000000220) #16	snapc5 (ENSCHAG00000000160) #17	LCTL (ENSCHAG00000000142) #20	zwilch (ENSCHAG00000000117) #19	rpl4 (ENSCHAG00000023757) #18	map2k1 (ENSCHAG00000023747) #16	smad6b (ENSCHAG00000023735) #21	ENSCHAG00000023728	smad6b (ENSCHAG00000023725) #21	ENSCHAG00000023724	SMAD3 (ENSCHAG00000023688) #22	aagab (ENSCHAG00000023674) #23	iqch (ENSCHAG00000023667) #25	zgc:162898 (ENSCHAG00000023666) #26	skor1b (ENSCHAG00000023652) #28	PIAS1 (ENSCHAG00000023617) #29	ENSCHAG00000023614	morf4l1 (ENSCHAG00000023342)	ENSCHAG00000023330	ENSCHAG00000023324	TLE3 (ENSCHAG00000022577)	vwf (ENSCHAG00000021723)	ENSCHAG00000020858	ENSCHAG00000020773	ENSCHAG00000020766	ENSCHAG00000020757
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	7	TUB (ENSDCDG00000035039)	rras2 (ENSDCDG00000035046)	copb1 (ENSDCDG00000035049)	ZNF821 (ENSDCDG00000035051)	ATXN1L (ENSDCDG00000035052)	nr1h3 (ENSDCDG00000035058)	MADD (ENSDCDG00000035262)	bbox1 (ENSDCDG00000035684)	fibinb (ENSDCDG00000035687)	ENSDCDG00000035691	dis3l (ENSDCDG00000035696) #14	tipin (ENSDCDG00000022673) #15	lctla (ENSDCDG00000022677) #20	crybgx (ENSDCDG00000022683)	smad6a (ENSDCDG00000022684) #21	SMAD3 (ENSDCDG00000022693) #22	map2k5 (ENSDCDG00000022906) #27	skor1a (ENSDCDG00000023245) #28	PIAS1 (ENSDCDG00000023259) #29	ENSDCDG00000023290	UACA (ENSDCDG00000023294)	tle3a (ENSDCDG00000023378)	paqr5b (ENSDCDG00000025967)	glceb (ENSDCDG00000025970)	CORO2B (ENSDCDG00000026021) #35	itga11a (ENSDCDG00000027395) #34	ENSDCDG00000027515	PCSK6 (ENSDCDG00000027564)	snrpa1 (ENSDCDG00000029782)	selenos (ENSDCDG00000029783)	chsy1 (ENSDCDG00000029786)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	250	ENSDCDG00000013794	miox (ENSDCDG00000013799)	c2cd5 (ENSDCDG00000013815)	tnni1c (ENSDCDG00000014094)	ENSDCDG00000008246	calub (ENSDCDG00000008275)	utp15 (ENSDCDG00000008300)	ENSDCDG00000008348	fkbp4 (ENSDCDG00000008364)	ddx11 (ENSDCDG00000008424)	wash1 (ENSDCDG00000008442)	ENSDCDG00000008487	IQSEC3 (ENSDCDG00000008496)	ENSDCDG00000008628	smad6b (ENSDCDG00000008732) #21	SMAD3 (ENSDCDG00000008756) #22	zgc:162898 (ENSDCDG00000008909) #26	ENSDCDG00000008917 #28	SMAD3 (ENSDCDG00000008938) #22	SMAD6 (ENSDCDG00000008951) #21	ENSDCDG00000009004 #28
Denticle herring	MODERN SPECIES	250														ENSDCDG00000009004 #28	SMAD6 (ENSDCDG00000008951) #21	SMAD3 (ENSDCDG00000008938) #22	ENSDCDG00000008917 #28	zgc:162898 (ENSDCDG00000008909) #26	SMAD3 (ENSDCDG00000008756) #22	smad6b (ENSDCDG00000008732) #21	ENSDCDG00000008628	IQSEC3 (ENSDCDG00000008496)	ENSDCDG00000008487	wash1 (ENSDCDG00000008442)	ddx11 (ENSDCDG00000008424)	fkbp4 (ENSDCDG00000008364)	ENSDCDG00000008348	utp15 (ENSDCDG00000008300)	calub (ENSDCDG00000008275)	ENSDCDG00000008246	tnni1c (ENSDCDG00000014094)
Elephant shark	MODERN SPECIES	1767																smad3b (ENSCMIG00000015015) #22	aagab (ENSCMIG00000015014) #23	ENSCMIG00000015006 #25	iqch (ENSCMIG00000015002) #25	zgc:162898 (ENSCMIG00000014997) #26	map2k5 (ENSCMIG00000014975) #27	ENSCMIG00000014971 #28	ENSCMIG00000014970 #28	PIAS1 (ENSCMIG00000014959) #29	calml4a (ENSCMIG00000014948) #30	cln6a (ENSCMIG00000014944) #31	ENSCMIG00000014942	ENSCMIG00000014940 #34	ITGA11 (ENSCMIG00000014936) #34	CORO2B (ENSCMIG00000014931) #35	anp32a (ENSCMIG00000014929) #36
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.a #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1422	ENSEBUG00000011798	rrad (ENSEBUG00000011084)	ENSEBUG00000010096	pomt2 (ENSEBUG00000003103)	ENSEBUG00000015354	ENSEBUG00000005814	ENSEBUG00000013982	ENSEBUG00000010819	ENSEBUG00000013754	ENSEBUG00000003957	polr3c (ENSEBUG00000015243)	flad1 (ENSEBUG00000003057)	ENSEBUG00000007836	DYM (ENSEBUG00000009896)	acat2 (ENSEBUG00000005716)	SMAD3 (ENSEBUG00000015275) #22	ENSEBUG00000005908	ENSEBUG00000000625	ENSEBUG00000007646	ENSEBUG00000000654	TMC3 (ENSEBUG00000004013)	ENSEBUG00000001321	zgc:86811 (ENSEBUG00000016184)	PARP16 (ENSEBUG00000001358)	ENSEBUG00000009648	ENSEBUG00000006219	ENSEBUG00000003390	ENSEBUG00000006498	ISYNA1 (ENSEBUG00000005416)	ENSEBUG00000000553	ENSEBUG00000002756
Hagfish	MODERN SPECIES	178																ENSEBUG00000005116 #22
Lamprey	MODERN SPECIES	1460																SMAD3 (ENSPMAG00000000489) #22	SLC27A5 (ENSPMAG00000000492)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153499.b.b.b #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	3715																ENSPMAG00000004234 #22
Lamprey	MODERN SPECIES	5186																SMAD3 (ENSPMAG00000005371) #22
Hagfish	MODERN SPECIES	325											ENSEBUG00000005987	rpl17 (ENSEBUG00000009479)	ENSEBUG00000006288	smad6b (ENSEBUG00000014023) #21	ENSEBUG00000012204	ENSEBUG00000007138 #22	ENSEBUG00000012467	ENSEBUG00000012273	ENSEBUG00000009144
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153499.b.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153499.b.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153499.b.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153499.b.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153499.b.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES	11	ENSGT00670000098179.d.a	ENSGT00670000098179.d.b	ENSGT00940000157438.c	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975	ENSGT00940000162544.c.a	ENSGT00940000167241	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Clupeocephala	ANCESTRAL SPECIES	54	ENSGT00940000156639.d	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975	ENSGT00940000162544.c.a	ENSGT00940000164512.d	ENSGT00940000162544.d	ENSGT00940000167241	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000175982	ENSGT01030000236317	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A
Otomorpha	ANCESTRAL SPECIES	28	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b	ENSGT00940000158634.b	ENSGT00940000156639.d	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.g	ENSGT00390000006975.h	ENSGT00940000162544.c.a	ENSGT00940000177756	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000175982	ENSGT01030000236317	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A
Otophysi	ANCESTRAL SPECIES	17	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b	ENSGT00940000158634.b	ENSGT00940000156639.d	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.g	ENSGT00390000006975.h	ENSGT00940000162544.c.a	ENSGT00940000177756	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000175982	ENSGT01030000236317	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A
Characiphysae	ANCESTRAL SPECIES	40	ENSGT00550000074816.B	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b	ENSGT00940000158634.b	ENSGT00940000156639.d	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.g.a	ENSGT00390000006975.h	ENSGT00940000162544.c.a	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Channel catfish	MODERN SPECIES	7	orai1 (ENSIPUG00000024755)	dgcr2 (ENSIPUG00000024759)	Dgcr14 (ENSIPUG00000024767)	dusp11 (ENSIPUG00000024772)	ENSIPUG00000024774	carm1l (ENSIPUG00000024779)	pum3 (ENSIPUG00000024801)	KCNV2 (ENSIPUG00000024805)	vldlr (ENSIPUG00000024806)	sh3bp2 (ENSIPUG00000024812)	ENSIPUG00000024814	cldn23.1 (ENSIPUG00000024815)	ENSIPUG00000024830	ENSIPUG00000024835	ENSIPUG00000024836	SMAD2 (ENSIPUG00000024838) ##22	skor2 (ENSIPUG00000024843)	ier3ip1 (ENSIPUG00000024846)	ENSIPUG00000024847	hdhd2 (ENSIPUG00000024849)	katnal2 (ENSIPUG00000024858)	sigmar1 (ENSIPUG00000024867)	galt (ENSIPUG00000024875)	cntfr (ENSIPUG00000024885)	IL11RA (ENSIPUG00000024886)	tmem267 (ENSIPUG00000024890)	si:busm1-57f23.1 (ENSIPUG00000024895)	rassf6 (ENSIPUG00000024892)	MUSK (ENSIPUG00000024897)	Lpar1 (ENSIPUG00000024901)	epha5 (ENSIPUG00000024902)
Characiphysae_b	ANCESTRAL SPECIES	36	ENSGT00550000074816.B	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b	ENSGT00940000158634.b	ENSGT00940000156639.d	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.g.a.b	ENSGT00390000006975.h	ENSGT00940000162544.c.a	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Electric eel	MODERN SPECIES	891													ENSEEEG00000018931	ENSEEEG00000018932	ENSEEEG00000018933	smad2 (ENSEEEG00000018934) ##22	skor2 (ENSEEEG00000018955)	ier3ip1 (ENSEEEG00000018957)	hdhd2 (ENSEEEG00000018959)	katnal2 (ENSEEEG00000018962)	sigmar1 (ENSEEEG00000018966)	galt (ENSEEEG00000018969)
Characoidei	ANCESTRAL SPECIES	29	ENSGT00940000156820.a.b	ENSGT00940000158634.b	ENSGT00940000156639.d	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.g.a.b	ENSGT00390000006975.h	ENSGT00940000162544.c.a	ENSGT00940000162544.d	ENSGT00940000177756	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Mexicana tetra	MODERN SPECIES	12	ENSAMXG00000020879	tjp2a (ENSAMXG00000020891)	pip5k1ba (ENSAMXG00000020897)	ENSAMXG00000020903	pum3 (ENSAMXG00000020911)	KCNV2 (ENSAMXG00000020918)	vldlr (ENSAMXG00000020944)	ENSAMXG00000020975	spp1 (ENSAMXG00000020994)	ENSAMXG00000041283	ENSAMXG00000041239	cldn23.1 (ENSAMXG00000035759)	ENSAMXG00000009947	ENSAMXG00000033990	ENSAMXG00000009925	smad2 (ENSAMXG00000033654) ##22	skor2 (ENSAMXG00000009891)	ier3ip1 (ENSAMXG00000036696)	hdhd2 (ENSAMXG00000033439)	katnal2 (ENSAMXG00000009836)	sigmar1 (ENSAMXG00000009814)	galt (ENSAMXG00000009803)	cntfr (ENSAMXG00000009796)	ENSAMXG00000009780	tmem267 (ENSAMXG00000029260)	si:busm1-57f23.1 (ENSAMXG00000029050)	rassf6 (ENSAMXG00000041828)	ENSAMXG00000033560	ENSAMXG00000034657	MUSK (ENSAMXG00000039697)	lpar1 (ENSAMXG00000040288)
Red-bellied piranha	MODERN SPECIES	66	pip5k1ba (ENSPNAG00000026470)	ENSPNAG00000026491	pum3 (ENSPNAG00000026524)	KCNV2 (ENSPNAG00000026542)	vldlr (ENSPNAG00000026791)	ENSPNAG00000026805	spp1 (ENSPNAG00000004966)	ENSPNAG00000026848	CLDN23 (ENSPNAG00000026880)	cldn23.1 (ENSPNAG00000026896)	ENSPNAG00000026976	ENSPNAG00000026996	ENSPNAG00000005608	ENSPNAG00000027049	ENSPNAG00000027063	smad2 (ENSPNAG00000027151) ##22	skor2 (ENSPNAG00000027179)	ier3ip1 (ENSPNAG00000027196)	hdhd2 (ENSPNAG00000027220)	katnal2 (ENSPNAG00000027423)	sigmar1 (ENSPNAG00000006669)	galt (ENSPNAG00000006377)	ENSPNAG00000005900	cntfr (ENSPNAG00000027556)	ENSPNAG00000027577	tmem267 (ENSPNAG00000027589)	si:busm1-57f23.1 (ENSPNAG00000006486)	rassf6 (ENSPNAG00000027662)	MUSK (ENSPNAG00000027797)	lpar1 (ENSPNAG00000027815)	ENSPNAG00000027941
Cyprinoidei	ANCESTRAL SPECIES	84	ENSGT00940000159526	ENSGT00950000183171.A.b.a.a	ENSGT00940000158321	ENSGT00390000015280	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00980000203321	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.g	ENSGT00390000006975.h	ENSGT00940000162544.c.a	ENSGT00940000177756	ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000175982	ENSGT01030000236317	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864.k.a	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	408									ENSGT00940000181051	ENSGT01030000235199.a	ENSGT00390000006975.g.c	ENSGT00940000153499.b.a.b ##22	ENSGT00940000160474.d.a.b	ENSGT00510000047648.a.d	ENSGT00940000175982	ENSGT00940000153499.b.a.a ##22	ENSGT00940000160474.d.a.a	ENSGT00510000047648.a.c	ENSGT00940000155805	ENSGT00940000157302.a	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864.k.a.a.a	ENSGT00940000165521.a.a.a	ENSGT00390000003050	ENSGT00390000009872.a	ENSGT00940000159886.d	ENSGT00940000158226.j.a	ENSGT01050000244941.A.l	ENSGT00940000163892.C.a.b.c	ENSGT00940000158571.g.a
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	ENSCARG00000032893	ENSCARG00000032873	DIRAS2 (ENSCARG00000032864)	syk (ENSCARG00000032674)	MAP3K1 (ENSCARG00000032440)	hmgcs1 (ENSCARG00000032343)	tln1 (ENSCARG00000031215)	tpm2 (ENSCARG00000030269)	zgc:114200 (ENSCARG00000030227)	ENSCARG00000030221	dcp2 (ENSCARG00000030205)	reep5 (ENSCARG00000030112)	chd1 (ENSCARG00000029856)	macir (ENSCARG00000029818)	ENSCARG00000029754	smad2 (ENSCARG00000029739) ##22	skor2 (ENSCARG00000029735)	ier3ip1 (ENSCARG00000029723)	hdhd2 (ENSCARG00000029712)	katnal2 (ENSCARG00000029666)	ENSCARG00000029635	il21 (ENSCARG00000029620)	cntfr (ENSCARG00000029572)	ENSCARG00000029562	ENSCARG00000029554	chsy3 (ENSCARG00000029537)	hint1 (ENSCARG00000029519)	ubxn8 (ENSCARG00000029505)	ppp2cb (ENSCARG00000029483)	ENSCARG00000029463	PURG (ENSCARG00000029447)
Goldfish	MODERN SPECIES	1	ENSCARG00000042747	smc5 (ENSCARG00000042929)	zfand5b (ENSCARG00000043222)	erbin (ENSCARG00000043536)	nln (ENSCARG00000047008)	ENSCARG00000049759	sgtb (ENSCARG00000049770)	trappc13 (ENSCARG00000049796)	KCNV2 (ENSCARG00000049834)	vldlr (ENSCARG00000050170)	ENSCARG00000060919	spp1 (ENSCARG00000060951)	ENSCARG00000001774	CLDN23 (ENSCARG00000001780)	cldn23.1 (ENSCARG00000001786)	smad2 (ENSCARG00000001810) ##22	vldlr (ENSCARG00000002339)	KCNV2 (ENSCARG00000007471)	trappc13 (ENSCARG00000007490)	sgtb (ENSCARG00000007579)	nln (ENSCARG00000007652)	erbin (ENSCARG00000009068)	zfand5b (ENSCARG00000010542)	smc5 (ENSCARG00000010569)	ENSCARG00000010754	ENSCARG00000010765	ENSCARG00000010850	tjp2a (ENSCARG00000010947)	trim23 (ENSCARG00000010986)	ppwd1 (ENSCARG00000011499)	ADAMTS6 (ENSCARG00000011545)
Goldfish	MODERN SPECIES	28	hsdl2 (ENSCARG00000019515)	ENSCARG00000019491	inip (ENSCARG00000019478)	lin54 (ENSCARG00000019087)	cops4 (ENSCARG00000018998)	plac8.2 (ENSCARG00000018977)	plac8.1 (ENSCARG00000018974)	srek1ip1 (ENSCARG00000018968)	ADAMTS6 (ENSCARG00000018819)	trim23 (ENSCARG00000018485)	ENSCARG00000018447	ENSCARG00000018442	CLDN23 (ENSCARG00000018434)	cldn23.1 (ENSCARG00000018429)	ENSCARG00000018303	smad2 (ENSCARG00000018258) ##22	skor2 (ENSCARG00000018248)	ier3ip1 (ENSCARG00000018240)	sigmar1 (ENSCARG00000018234)	ENSCARG00000018230	ENSCARG00000018228	cntfr (ENSCARG00000018219)	ENSCARG00000018202	tmem267 (ENSCARG00000018189)	si:busm1-57f23.1 (ENSCARG00000018187)	rassf6 (ENSCARG00000018156)	MUSK (ENSCARG00000017704)	lpar1 (ENSCARG00000017648)	ENSCARG00000017645	ENSCARG00000017638	ENSCARG00000015844
Cyprininae_a	ANCESTRAL SPECIES	189	ENSGT00940000158634.b.b	ENSGT00940000156820.a.b.b	ENSGT00940000162046.a	ENSGT00550000074816.B.c	ENSGT00940000164966.b.a.a	ENSGT00940000159526.j	ENSGT00950000183171.A.b.a.a.m	ENSGT00940000158321.a.a.a	ENSGT00390000015280.gb	ENSGT00390000015757.ab	ENSGT00940000157438.d	ENSGT00940000155460.d	ENSGT00980000203321	ENSGT00400000024390.a	ENSGT00940000162544.c.a.b	ENSGT00940000153499.b.a.a ##22	ENSGT00940000160474.c	ENSGT01030000236317
Common carp reference	MODERN SPECIES	24	ENSCCRG00000053907	ENSCCRG00000007066	tjp2a (ENSCCRG00000071555)	ENSCCRG00000043735	ENSCCRG00000047761	smc5 (ENSCCRG00000039596)	erbin (ENSCCRG00000038937)	nln (ENSCCRG00000004075)	sgtb (ENSCCRG00000057210)	trappc13 (ENSCCRG00000073745)	pum3 (ENSCCRG00000055726)	ENSCCRG00000060136	vldlr (ENSCCRG00000002363)	spp1 (ENSCCRG00000032025)	ENSCCRG00000061104	smad2 (ENSCCRG00000053483) ##22	skor2 (ENSCCRG00000057797)	ier3ip1 (ENSCCRG00000006551)	hdhd2 (ENSCCRG00000081536)	katnal2 (ENSCCRG00000034384)	sigmar1 (ENSCCRG00000034373)	galt (ENSCCRG00000056065)	ENSCCRG00000040304	ENSCCRG00000058891	ENSCCRG00000070953	ENSCCRG00000070926	ENSCCRG00000082486	si:busm1-57f23.1 (ENSCCRG00000070997)	ENSCCRG00000009062	lpar1 (ENSCCRG00000072551)	ENSCCRG00000077456
Golden-line barbel	MODERN SPECIES	653	erbin (ENSSGRG00000014627)	nln (ENSSGRG00000014764)	sgtb (ENSSGRG00000014834)	sgtb (ENSSGRG00000014836)	trappc13 (ENSSGRG00000014840)	pum3 (ENSSGRG00000014889)	KCNV2 (ENSSGRG00000014986)	vldlr (ENSSGRG00000015016)	ENSSGRG00000018278	spp1 (ENSSGRG00000018279)	ENSSGRG00000018282	ENSSGRG00000018283	CLDN23 (ENSSGRG00000018286)	cldn23.1 (ENSSGRG00000018287)	ENSSGRG00000018290	smad2 (ENSSGRG00000018296) ##22	skor2 (ENSSGRG00000018850)	ier3ip1 (ENSSGRG00000018851)	hdhd2 (ENSSGRG00000018852)	katnal2 (ENSSGRG00000018879)	sigmar1 (ENSSGRG00000018986)
Cyprininae	ANCESTRAL SPECIES	408													ENSGT00940000181051	ENSGT01030000235199.a	ENSGT00390000006975.g.c	ENSGT00940000153499.b.a.b ##22	ENSGT00940000160474.d.a.b	ENSGT00510000047648.a.d	ENSGT00940000175982	ENSGT00940000153499.b.a.a ##22	ENSGT00940000160474.d.a.a	ENSGT00510000047648.a.c	ENSGT00940000155805	ENSGT00940000157302.a	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864.k.a.a.a	ENSGT00940000165521.a.a.a	ENSGT00390000003050	ENSGT00390000009872.a	ENSGT00940000159886.d
Cyprininae_a	ANCESTRAL SPECIES	265	ENSGT00940000162046.b	ENSGT00940000156117.e.b	ENSGT00550000074816.B.d	ENSGT00940000164966.b.a.b	ENSGT00940000159526.i	ENSGT00950000183171.A.b.a.a.n	ENSGT00940000158321.a.a.b	ENSGT00390000015280.hb	ENSGT00390000015757.`b	ENSGT00940000155460.c	ENSGT00990000210561	ENSGT00390000002216.f	ENSGT00400000024390.b	ENSGT01030000235199.a	ENSGT00390000006975.g.c	ENSGT00940000153499.b.a.b ##22	ENSGT00940000160474.d.a.b	ENSGT00510000047648.a.d	ENSGT00940000175982	ENSGT00940000155805.j	ENSGT00940000160474.d.a.a	ENSGT00510000047648.a.c	ENSGT00940000155805.i	ENSGT00940000157302.b	ENSGT00390000012082.c	ENSGT00940000157302.a	ENSGT00390000012082.d	ENSGT00390000016188	ENSGT00940000158864.k.b	ENSGT00940000165521.a.a.b	ENSGT00940000158864.k.a.a.b
Common carp reference	MODERN SPECIES	32	ENSCCRG00000043490	zfand5b (ENSCCRG00000074330)	erbin (ENSCCRG00000043889)	nln (ENSCCRG00000004300)	sgtb (ENSCCRG00000004049)	trappc13 (ENSCCRG00000002947)	ENSCCRG00000022116	pum3 (ENSCCRG00000019861)	vldlr (ENSCCRG00000078135)	ENSCCRG00000019832	ENSCCRG00000082717	ENSCCRG00000078171	spp1 (ENSCCRG00000003345)	ENSCCRG00000070777	cldn23.1 (ENSCCRG00000000846)	smad2 (ENSCCRG00000000455) ##22	skor2 (ENSCCRG00000074056)	ier3ip1 (ENSCCRG00000064699)	ENSCCRG00000018995	hdhd2 (ENSCCRG00000009728)	ENSCCRG00000070108	sigmar1 (ENSCCRG00000009718)	ENSCCRG00000066843	ENSCCRG00000064114	cntfr (ENSCCRG00000009126)	tmem267 (ENSCCRG00000081019)	ENSCCRG00000009110	rassf6 (ENSCCRG00000009066)	ENSCCRG00000009094	lpar1 (ENSCCRG00000057505)	ENSCCRG00000014009
Zebrafish	MODERN SPECIES	1	pum3 (ENSDARG00000087779)	KCNV2 (ENSDARG00000076644)	vldlr (ENSDARG00000006257)	ENSDARG00000021982	ENSDARG00000113306	spp1 (ENSDARG00000044276)	scpp8 (ENSDARG00000093124)	ENSDARG00000092580	ENSDARG00000114063	CLDN23 (ENSDARG00000103703)	cldn23.1 (ENSDARG00000028096)	ENSDARG00000094850	ENSDARG00000094055	ENSDARG00000092525	ENSDARG00000095137	smad2 (ENSDARG00000006389) ##22	skor2 (ENSDARG00000063614)	ier3ip1 (ENSDARG00000039601)	hdhd2 (ENSDARG00000024728)	katnal2 (ENSDARG00000012275)	sigmar1 (ENSDARG00000011418)	galt (ENSDARG00000069543)	ENSDARG00000095502	cntfr (ENSDARG00000028661)	ENSDARG00000026736	tmem267 (ENSDARG00000000142)	si:busm1-57f23.1 (ENSDARG00000074425)	rassf6 (ENSDARG00000000804)	musk (ENSDARG00000098764)	lpar1 (ENSDARG00000099840)	ENSDARG00000104560
Clupeiformes	ANCESTRAL SPECIES	131																ENSGT00940000153499.b.a ##22	ENSGT00940000160474	ENSGT00510000047648.a	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
Denticle herring	MODERN SPECIES	13	pcna (ENSDCDG00000018200)	ENSDCDG00000018192	rassf2b (ENSDCDG00000018181)	ENSDCDG00000018179	prnpb (ENSDCDG00000018146)	ENSDCDG00000018116	LETM2 (ENSDCDG00000018106)	NSD3 (ENSDCDG00000017236)	plpp5 (ENSDCDG00000017205)	ENSDCDG00000017202	ENSDCDG00000017192	ENSDCDG00000017190	loxl2a (ENSDCDG00000016948)	ENSDCDG00000016933	ENSDCDG00000016929	smad2 (ENSDCDG00000016902) ##22	skor2 (ENSDCDG00000016900)	ier3ip1 (ENSDCDG00000016897)	hdhd2 (ENSDCDG00000016896)	katnal2 (ENSDCDG00000016887)	sigmar1 (ENSDCDG00000016882)	galt (ENSDCDG00000016876)	ENSDCDG00000016873	cntfr (ENSDCDG00000016870)	ENSDCDG00000016869	tmem267 (ENSDCDG00000016868)	si:busm1-57f23.1 (ENSDCDG00000016864)	rassf6 (ENSDCDG00000016858)	MUSK (ENSDCDG00000016840)	lpar1 (ENSDCDG00000016829)	ENSDCDG00000016320
Euteleosteomorpha	ANCESTRAL SPECIES	15	ENSGT00950000183078.b.b	ENSGT00870000136894	ENSGT00400000022306	ENSGT00940000160709	ENSGT00940000156599	ENSGT00550000074823.b.b	ENSGT01010000222287.B.a.a.a.b	ENSGT00950000183200.B	ENSGT00940000156161.B	ENSGT00390000015494	ENSGT00510000047107.B.d	ENSGT00940000157438.c	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00510000047648.b.a	ENSGT00390000013892	ENSGT00390000013037	ENSGT00940000160867	ENSGT00940000164390	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b	ENSGT01030000234535.E.c	ENSGT00940000156423.i	ENSGT00390000013339	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a
Acanthomorphata	ANCESTRAL SPECIES	46	ENSGT00950000183078.b.b	ENSGT00870000136894	ENSGT00400000022306	ENSGT00940000160709	ENSGT00940000156599	ENSGT00550000074823.b.b	ENSGT01010000222287.B.a.a.a.b	ENSGT00950000183200.B	ENSGT00940000156161.B	ENSGT00390000015494	ENSGT00510000047107.B.d	ENSGT00940000157438.c	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00510000047648.b.b.b	ENSGT00940000175330
Euacanthomorphacea	ANCESTRAL SPECIES	22	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT00390000004906.a.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT00390000004906.a.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895
Tiger tail seahorse	MODERN SPECIES	341	hk2 (ENSHCOG00000004285)	figla (ENSHCOG00000000115)	add2 (ENSHCOG00000004337)	snrnp27 (ENSHCOG00000004346)	MXD1 (ENSHCOG00000004368)	zgc:65851 (ENSHCOG00000005156)	cds2 (ENSHCOG00000005262)	arhgap25 (ENSHCOG00000005276)	bmp10 (ENSHCOG00000005298)	ENSHCOG00000005308	ERLIN2 (ENSHCOG00000005323)	znf703 (ENSHCOG00000005333)	ENSHCOG00000005356	rchy1 (ENSHCOG00000005380)	ENSHCOG00000005435	smad2 (ENSHCOG00000005469) ##22	IER3IP1 (ENSHCOG00000005478)	ENSHCOG00000005488	ENSHCOG00000005510	zbtb26 (ENSHCOG00000005521)	gucd1 (ENSHCOG00000005532)	ENSHCOG00000005545	adora2aa (ENSHCOG00000005571)	specc1la (ENSHCOG00000005604)	si:dkey-91m11.5 (ENSHCOG00000005647)	ift81 (ENSHCOG00000005677)	ENSHCOG00000005728	anapc7 (ENSHCOG00000005762)	ENSHCOG00000005765	ENSHCOG00000005783	pptc7a (ENSHCOG00000005805)
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00940000155668.i.b
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Carangaria	ANCESTRAL SPECIES	9	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00940000179994	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D.f	ENSGT00940000165298.a.b
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	398	hk2 (ENSCSEG00000009719)	ENSCSEG00000009776	add2 (ENSCSEG00000009848)	snrnp27 (ENSCSEG00000009873)	MXD1 (ENSCSEG00000009887)	zgc:65851 (ENSCSEG00000009895)	cds2 (ENSCSEG00000009902)	arhgap25 (ENSCSEG00000009923)	bmp10 (ENSCSEG00000009939)	ENSCSEG00000009944	ERLIN2 (ENSCSEG00000009950)	znf703 (ENSCSEG00000010000)	TIA1 (ENSCSEG00000010018)	rchy1 (ENSCSEG00000010033)	ENSCSEG00000010057	smad2 (ENSCSEG00000010075) ##22	ENSCSEG00000010086	ENSCSEG00000010097	ENSCSEG00000010103	zbtb26 (ENSCSEG00000010150)	gucd1 (ENSCSEG00000010153)	upb1 (ENSCSEG00000010170)	si:dkey-91m11.5 (ENSCSEG00000010207)	specc1la (ENSCSEG00000010230)	adora2aa (ENSCSEG00000010259)	ift81 (ENSCSEG00000010269)	PPP1CA (ENSCSEG00000010307)	ENSCSEG00000010324	anapc7 (ENSCSEG00000010399)	ENSCSEG00000010426	ENSCSEG00000010435
Tongue sole	MODERN SPECIES	397	ENSCSEG00000013867	RAB27B (ENSCSEG00000013912)	ENSCSEG00000014055	ENSCSEG00000014073	ENSCSEG00000014077	mier3b (ENSCSEG00000014083)	ENSCSEG00000014106	rab3c (ENSCSEG00000014112)	PDE4D (ENSCSEG00000014124)	ENSCSEG00000014137	ERLIN2 (ENSCSEG00000014144)	znf703 (ENSCSEG00000014156)	ENSCSEG00000014161	ENSCSEG00000014166	ENSCSEG00000014190	smad2 (ENSCSEG00000014228) ##22	ENSCSEG00000014409	ENSCSEG00000014410	smarcad1a (ENSCSEG00000014419)	ENSCSEG00000014459	grid2 (ENSCSEG00000014466)	ENSCSEG00000014483	ENSCSEG00000014489	ENSCSEG00000014501	ENSCSEG00000014508	ebf2 (ENSCSEG00000014512)	ANK1 (ENSCSEG00000014527)	ENSCSEG00000014589	ENSCSEG00000014602	spaw (ENSCSEG00000014635)	ENSCSEG00000014643
Turbot	MODERN SPECIES	21	hk2 (ENSSMAG00000020019)	figla (ENSSMAG00000020025)	add2 (ENSSMAG00000020030)	snrnp27 (ENSSMAG00000020051)	ENSSMAG00000020061	zgc:65851 (ENSSMAG00000020070)	cds2 (ENSSMAG00000020076)	ENSSMAG00000020091	bmp10 (ENSSMAG00000020110)	ENSSMAG00000020120	ENSSMAG00000022467	ENSSMAG00000020220	ENSSMAG00000020230	ENSSMAG00000000109	ENSSMAG00000000118	ENSSMAG00000000128 ##22	ENSSMAG00000000142	ENSSMAG00000000144	ENSSMAG00000000150	ENSSMAG00000000196	ENSSMAG00000000202	gucd1 (ENSSMAG00000000213)	upb1 (ENSSMAG00000000217)	ENSSMAG00000026273	adora2aa (ENSSMAG00000001184)	specc1la (ENSSMAG00000001150)	si:dkey-91m11.5 (ENSSMAG00000001077)	ENSSMAG00000037685	ENSSMAG00000001055	ENSSMAG00000001001	ENSSMAG00000000971
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Barramundi perch	MODERN SPECIES	95	hk2 (ENSLCAG00010016823)	figla (ENSLCAG00010016455)	add2 (ENSLCAG00010016404)	snrnp27 (ENSLCAG00010016371)	MXD1 (ENSLCAG00010016360)	zgc:65851 (ENSLCAG00010016356)	cds2 (ENSLCAG00010016059)	arhgap25 (ENSLCAG00010015961)	bmp10 (ENSLCAG00010015960)	ENSLCAG00010015957	ERLIN2 (ENSLCAG00010015624)	znf703 (ENSLCAG00010015566)	ENSLCAG00010015547	ENSLCAG00010015531	ENSLCAG00010015517	smad2 (ENSLCAG00010015487) ##22	IER3IP1 (ENSLCAG00010015476)	ENSLCAG00010015470	ENSLCAG00010015465	zbtb26 (ENSLCAG00010015462)	p2rx4b (ENSLCAG00010027958)	gucd1 (ENSLCAG00010027956)	upb1 (ENSLCAG00010027949)	adora2aa (ENSLCAG00010027946)	specc1la (ENSLCAG00010027943)	ENSLCAG00010027941	si:dkey-91m11.5 (ENSLCAG00010027879)	ift81 (ENSLCAG00010027815)	ENSLCAG00010027791	anapc7 (ENSLCAG00010027774)	ENSLCAG00010027772
Seriola	ANCESTRAL SPECIES	7	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Yellowtail amberjack	MODERN SPECIES	3287	hk2 (ENSSLDG00000014876)	figla (ENSSLDG00000014859)	add2 (ENSSLDG00000014818)	snrnp27 (ENSSLDG00000014795)	MXD1 (ENSSLDG00000014776)	zgc:65851 (ENSSLDG00000014769)	cds2 (ENSSLDG00000014746)	arhgap25 (ENSSLDG00000014727)	bmp10 (ENSSLDG00000014718)	ENSSLDG00000014710	ERLIN2 (ENSSLDG00000014675)	znf703 (ENSSLDG00000014662)	TIA1 (ENSSLDG00000014625)	ENSSLDG00000014582	ENSSLDG00000014500	smad2 (ENSSLDG00000014460) ##22	IER3IP1 (ENSSLDG00000014439)	ENSSLDG00000014429	ENSSLDG00000014406	zbtb26 (ENSSLDG00000014390)	p2rx4b (ENSSLDG00000014300)	gucd1 (ENSSLDG00000014263)	upb1 (ENSSLDG00000014229)	adora2aa (ENSSLDG00000014206)	specc1la (ENSSLDG00000014158)	si:dkey-91m11.5 (ENSSLDG00000014110)	ift81 (ENSSLDG00000014065)	ATP2A1 (ENSSLDG00000013988)	anapc7 (ENSSLDG00000013930)	ENSSLDG00000013909	ENSSLDG00000013897
Greater amberjack	MODERN SPECIES	6	hk2 (ENSSDUG00000003114)	figla (ENSSDUG00000003146)	add2 (ENSSDUG00000003212)	snrnp27 (ENSSDUG00000003229)	MXD1 (ENSSDUG00000003240)	zgc:65851 (ENSSDUG00000003252)	cds2 (ENSSDUG00000003275)	arhgap25 (ENSSDUG00000003317)	bmp10 (ENSSDUG00000003333)	ENSSDUG00000003356	ERLIN2 (ENSSDUG00000003402)	znf703 (ENSSDUG00000003434)	TIA1 (ENSSDUG00000003453)	ENSSDUG00000003508	ENSSDUG00000003580	smad2 (ENSSDUG00000003668) ##22	IER3IP1 (ENSSDUG00000003735)	ENSSDUG00000003748	ENSSDUG00000003754	zbtb26 (ENSSDUG00000003767)	p2rx4b (ENSSDUG00000003787)	gucd1 (ENSSDUG00000003890)	upb1 (ENSSDUG00000003906)	adora2aa (ENSSDUG00000003946)	specc1la (ENSSDUG00000003961)	ENSSDUG00000003998	si:dkey-91m11.5 (ENSSDUG00000004015)	ift81 (ENSSDUG00000004083)	ATP2A1 (ENSSDUG00000004172)	anapc7 (ENSSDUG00000004264)	ENSSDUG00000004303
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Zig-zag eel	MODERN SPECIES	23	figla (ENSMAMG00000020638)	add2 (ENSMAMG00000020629)	snrnp27 (ENSMAMG00000020624)	ENSMAMG00000020618	zgc:65851 (ENSMAMG00000020614)	cds2 (ENSMAMG00000020602)	ENSMAMG00000020599	bmp10 (ENSMAMG00000026256)	ENSMAMG00000025210	ENSMAMG00000020586	ENSMAMG00000020582	ENSMAMG00000020575	ENSMAMG00000020566	ENSMAMG00000020550	ENSMAMG00000020505	ENSMAMG00000020535 ##22	ENSMAMG00000020527	ENSMAMG00000020481	ENSMAMG00000024769	ENSMAMG00000020466	gucd1 (ENSMAMG00000020462)	upb1 (ENSMAMG00000020451)	adora2aa (ENSMAMG00000020444)	specc1la (ENSMAMG00000020436)	ENSMAMG00000020430	si:dkey-91m11.5 (ENSMAMG00000020415)	ENSMAMG00000020393	ENSMAMG00000020368	ENSMAMG00000020351	ENSMAMG00000020346	ENSMAMG00000020341
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Climbing perch	MODERN SPECIES	22	hk2 (ENSATEG00000014796)	figla (ENSATEG00000014775)	add2 (ENSATEG00000014740)	snrnp27 (ENSATEG00000014733)	ENSATEG00000028566	zgc:65851 (ENSATEG00000014687)	cds2 (ENSATEG00000014657)	ENSATEG00000014647	bmp10 (ENSATEG00000014644)	ENSATEG00000014641	ENSATEG00000014619	ENSATEG00000014611	ENSATEG00000014593	ENSATEG00000014578	ENSATEG00000014547	ENSATEG00000014510 ##22	ENSATEG00000027975	ENSATEG00000028793	ENSATEG00000014364	ENSATEG00000014361	ENSATEG00000014284	ENSATEG00000014181	gucd1 (ENSATEG00000014160)	upb1 (ENSATEG00000014114)	adora2aa (ENSATEG00000014104)	specc1la (ENSATEG00000014060)	ENSATEG00000014044	si:dkey-91m11.5 (ENSATEG00000013988)	ENSATEG00000013815	ENSATEG00000013767	ENSATEG00000013754
Siamese fighting fish	MODERN SPECIES	20	NPFFR1 (ENSBSLG00000015160)	hk2 (ENSBSLG00000011402)	figla (ENSBSLG00000011286)	add2 (ENSBSLG00000010766)	snrnp27 (ENSBSLG00000010236)	MXD1 (ENSBSLG00000010233)	zgc:65851 (ENSBSLG00000010227)	cds2 (ENSBSLG00000009967)	arhgap25 (ENSBSLG00000009911)	bmp10 (ENSBSLG00000009907)	ERLIN2 (ENSBSLG00000009075)	znf703 (ENSBSLG00000008915)	TIA1 (ENSBSLG00000008276)	ENSBSLG00000017288	ENSBSLG00000017049	smad2 (ENSBSLG00000016731) ##22	IER3IP1 (ENSBSLG00000016588)	ENSBSLG00000015861	ENSBSLG00000015820	zbtb26 (ENSBSLG00000015816)	p2rx4b (ENSBSLG00000015651)	gucd1 (ENSBSLG00000015621)	upb1 (ENSBSLG00000015584)	adora2aa (ENSBSLG00000015575)	specc1la (ENSBSLG00000015410)	ift81 (ENSBSLG00000014857)	ENSBSLG00000014780	anapc7 (ENSBSLG00000014734)	ENSBSLG00000014628	rad9b (ENSBSLG00000014620)	pptc7a (ENSBSLG00000014615)
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Ballan wrasse	MODERN SPECIES	87	figla (ENSLBEG00000027562)	add2 (ENSLBEG00000027578)	snrnp27 (ENSLBEG00000027603)	MXD1 (ENSLBEG00000000032)	zgc:65851 (ENSLBEG00000000038)	cds2 (ENSLBEG00000000041)	arhgap25 (ENSLBEG00000000055)	bmp10 (ENSLBEG00000000065)	ENSLBEG00000000080	ERLIN2 (ENSLBEG00000000087)	znf703 (ENSLBEG00000000104)	ENSLBEG00000000110	ENSLBEG00000000122	ENSLBEG00000000157	ENSLBEG00000000190	smad2 (ENSLBEG00000000249) ##22	IER3IP1 (ENSLBEG00000000278)	ENSLBEG00000000293	zbtb26 (ENSLBEG00000000418)	p2rx4b (ENSLBEG00000000446)	gucd1 (ENSLBEG00000000512)	upb1 (ENSLBEG00000000563)	adora2aa (ENSLBEG00000000613)	specc1la (ENSLBEG00000000644)	si:dkey-91m11.5 (ENSLBEG00000000698)	ift81 (ENSLBEG00000000788)	ENSLBEG00000000854	ENSLBEG00000000927	BICDL1 (ENSLBEG00000000956)	CIT (ENSLBEG00000001001)	mtmr3 (ENSLBEG00000001129)
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Perciformes	ANCESTRAL SPECIES	6	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	23	figla (ENSCGOG00000020299)	cds2 (ENSCGOG00000020025)	arhgap25 (ENSCGOG00000020011)	bmp10 (ENSCGOG00000019986)	ENSCGOG00000019985	ERLIN2 (ENSCGOG00000018995)	znf703 (ENSCGOG00000018971)	rchy1 (ENSCGOG00000018970)	ENSCGOG00000018969	ENSCGOG00000018967	smad2 (ENSCGOG00000018880) ##22	ENSCGOG00000018867	ENSCGOG00000018131	ENSCGOG00000018079	ENSCGOG00000018059	smad2 (ENSCGOG00000017950) ##22	ENSCGOG00000017941	ENSCGOG00000017940	ENSCGOG00000017939	ENSCGOG00000017934	zbtb26 (ENSCGOG00000017933)	ENSCGOG00000017931	zbtb26 (ENSCGOG00000017930)	zbtb26 (ENSCGOG00000017927)	ENSCGOG00000017900	zbtb26 (ENSCGOG00000017895)	p2rx4b (ENSCGOG00000017765)	gucd1 (ENSCGOG00000017761)	specc1la (ENSCGOG00000017753)	ENSCGOG00000017750	si:dkey-91m11.5 (ENSCGOG00000015636)
Channel bull blenny	MODERN SPECIES	23	ap3m2 (ENSCGOG00000022971)	slc27a2a (ENSCGOG00000022965)	tet3 (ENSCGOG00000022963)	NPFFR1 (ENSCGOG00000022958)	hk2 (ENSCGOG00000020474)	figla (ENSCGOG00000020299)	cds2 (ENSCGOG00000020025)	arhgap25 (ENSCGOG00000020011)	bmp10 (ENSCGOG00000019986)	ENSCGOG00000019985	ERLIN2 (ENSCGOG00000018995)	znf703 (ENSCGOG00000018971)	rchy1 (ENSCGOG00000018970)	ENSCGOG00000018969	ENSCGOG00000018967	smad2 (ENSCGOG00000018880) ##22	ENSCGOG00000018867	ENSCGOG00000018131	ENSCGOG00000018079	ENSCGOG00000018059	smad2 (ENSCGOG00000017950) ##22	ENSCGOG00000017941	ENSCGOG00000017940	ENSCGOG00000017939	ENSCGOG00000017934	zbtb26 (ENSCGOG00000017933)	ENSCGOG00000017931	zbtb26 (ENSCGOG00000017930)	zbtb26 (ENSCGOG00000017927)	ENSCGOG00000017900	zbtb26 (ENSCGOG00000017895)
Pike perch	MODERN SPECIES	16	hk2 (ENSSLUG00000017408)	figla (ENSSLUG00000017949)	add2 (ENSSLUG00000017985)	snrnp27 (ENSSLUG00000018084)	ENSSLUG00000018088	zgc:65851 (ENSSLUG00000018093)	cds2 (ENSSLUG00000018129)	ENSSLUG00000018640	bmp10 (ENSSLUG00000018654)	ENSSLUG00000018680	ERLIN2 (ENSSLUG00000018725)	znf703 (ENSSLUG00000019057)	TIA1 (ENSSLUG00000019077)	ENSSLUG00000019111	ENSSLUG00000019126	smad2 (ENSSLUG00000019315) ##22	ENSSLUG00000019330	ENSSLUG00000019335	zbtb26 (ENSSLUG00000019338)	p2rx4b (ENSSLUG00000019342)	gucd1 (ENSSLUG00000019351)	p2rx4b (ENSSLUG00000019367)	gucd1 (ENSSLUG00000019429)	upb1 (ENSSLUG00000019441)	ENSSLUG00000019464	mrps28 (ENSSLUG00000019467)	brd3b (ENSSLUG00000019473)	aplnra (ENSSLUG00000019480)	ENSSLUG00000019482	TBC1D10A (ENSSLUG00000019487)	sf3a1 (ENSSLUG00000019502)
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT01050000245010
Lumpfish	MODERN SPECIES	24	figla (ENSCLMG00005018482)	add2 (ENSCLMG00005018416)	snrnp27 (ENSCLMG00005018410)	ENSCLMG00005018409	zgc:65851 (ENSCLMG00005018327)	cds2 (ENSCLMG00005017925)	arhgap25 (ENSCLMG00005017919)	bmp10 (ENSCLMG00005017918)	ENSCLMG00005017904	ERLIN2 (ENSCLMG00005017886)	ENSCLMG00005017885	znf703 (ENSCLMG00005017884)	TIA1 (ENSCLMG00005017873)	ENSCLMG00005017872	ENSCLMG00005017866	smad2 (ENSCLMG00005017577) ##22	IER3IP1 (ENSCLMG00005017575)	ENSCLMG00005017574	ENSCLMG00005017573	zbtb26 (ENSCLMG00005017572)	gucd1 (ENSCLMG00005017571)	upb1 (ENSCLMG00005017551)	adora2aa (ENSCLMG00005017534)	specc1la (ENSCLMG00005017215)	ENSCLMG00005017210	si:dkey-91m11.5 (ENSCLMG00005013609)	ift81 (ENSCLMG00005013585)	ENSCLMG00005009304	anapc7 (ENSCLMG00005009289)	ENSCLMG00005009287	ENSCLMG00005009285
Stickleback	MODERN SPECIES	12	add2 (ENSGACG00000013189)	snrnp27 (ENSGACG00000013195)	MXD1 (ENSGACG00000013215)	zgc:65851 (ENSGACG00000013231)	cds2 (ENSGACG00000013234)	arhgap25 (ENSGACG00000013273)	bmp10 (ENSGACG00000013276)	ENSGACG00000013278	ENSGACG00000013280	ERLIN2 (ENSGACG00000013283)	znf703 (ENSGACG00000013291)	TIA1 (ENSGACG00000013294)	rchy1 (ENSGACG00000013302)	ENSGACG00000013314	ENSGACG00000013316	smad2 (ENSGACG00000013323) ##22	ENSGACG00000013334	ENSGACG00000013338	ENSGACG00000013341	specc1la (ENSGACG00000013410)	zbtb26 (ENSGACG00000013351)	p2rx4b (ENSGACG00000013355)	gucd1 (ENSGACG00000013382)	upb1 (ENSGACG00000013386)	adora2aa (ENSGACG00000013408)	si:dkey-91m11.5 (ENSGACG00000013417)	ift81 (ENSGACG00000013431)	ATP2A1 (ENSGACG00000013436)	anapc7 (ENSGACG00000013441)	ENSGACG00000013448	rad9b (ENSGACG00000013463)
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000179994	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D
European seabass	MODERN SPECIES	13	tet3 (ENSDLAG00005005747)	ENSDLAG00005005806	hk2 (ENSDLAG00005005866)	figla (ENSDLAG00005006251)	add2 (ENSDLAG00005006286)	zgc:65851 (ENSDLAG00005006470)	cds2 (ENSDLAG00005009665)	ENSDLAG00005006474	bmp10 (ENSDLAG00005030781)	ENSDLAG00005028068	ENSDLAG00005006526	ENSDLAG00005006774	ENSDLAG00005006784	ENSDLAG00005007097	ENSDLAG00005007213	ENSDLAG00005007410 ##22	ENSDLAG00005007539	ENSDLAG00005007547	ENSDLAG00005007553	ENSDLAG00005035126	ENSDLAG00005007587	upb1 (ENSDLAG00005007811)	ENSDLAG00005007874	ENSDLAG00005007919	si:dkey-91m11.5 (ENSDLAG00005008329)	ENSDLAG00005009302	ENSDLAG00005009315	ENSDLAG00005009435	ENSDLAG00005031210	ENSDLAG00005010657	rad9b (ENSDLAG00005033090)
Large yellow croaker	MODERN SPECIES	2	NPFFR1 (ENSLCRG00005023380)	hk2 (ENSLCRG00005023320)	figla (ENSLCRG00005023317)	add2 (ENSLCRG00005023298)	snrnp27 (ENSLCRG00005023297)	ENSLCRG00005023296	zgc:65851 (ENSLCRG00005023295)	cds2 (ENSLCRG00005023222)	arhgap25 (ENSLCRG00005023203)	bmp10 (ENSLCRG00005023201)	ERLIN2 (ENSLCRG00005023174)	znf703 (ENSLCRG00005023172)	TIA1 (ENSLCRG00005023090)	ENSLCRG00005023068	ENSLCRG00005023045	smad2 (ENSLCRG00005023035) ##22	IER3IP1 (ENSLCRG00005023032)	ENSLCRG00005023025	zbtb26 (ENSLCRG00005023022)	p2rx4b (ENSLCRG00005023018)	gucd1 (ENSLCRG00005023015)	upb1 (ENSLCRG00005023014)	ENSLCRG00005023012	adora2aa (ENSLCRG00005023011)	specc1la (ENSLCRG00005022996)	ENSLCRG00005022992	si:dkey-91m11.5 (ENSLCRG00005022371)	ift81 (ENSLCRG00005022274)	ENSLCRG00005021817	anapc7 (ENSLCRG00005021807)	ENSLCRG00005021803
Gilthead seabream	MODERN SPECIES	19	figla (ENSSAUG00010022186)	add2 (ENSSAUG00010022105)	DNAH2 (ENSSAUG00010022092)	snrnp27 (ENSSAUG00010022088)	MXD1 (ENSSAUG00010022086)	zgc:65851 (ENSSAUG00010022068)	cds2 (ENSSAUG00010022057)	arhgap25 (ENSSAUG00010022052)	bmp10 (ENSSAUG00010022051)	ENSSAUG00010022050	ERLIN2 (ENSSAUG00010022035)	znf703 (ENSSAUG00010022034)	ENSSAUG00010022027	ENSSAUG00010021829	ENSSAUG00010021790	smad2 (ENSSAUG00010021762) ##22	IER3IP1 (ENSSAUG00010021755)	ENSSAUG00010021754	ENSSAUG00010021749	zbtb26 (ENSSAUG00010021746)	p2rx4b (ENSSAUG00010021167)	gucd1 (ENSSAUG00010021159)	upb1 (ENSSAUG00010021158)	adora2aa (ENSSAUG00010021157)	specc1la (ENSSAUG00010021153)	ENSSAUG00010021145	si:dkey-91m11.5 (ENSSAUG00010018567)	ift81 (ENSSAUG00010018520)	ENSSAUG00010013429	DDHD2 (ENSSAUG00010013280)	ENSSAUG00010013276
Tetraodontidae	ANCESTRAL SPECIES	24	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999.m	ENSGT00940000155668.i.b	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT00390000005767.b
Fugu	MODERN SPECIES	13	hk2 (ENSTRUG00000014540)	figla (ENSTRUG00000014725)	add2 (ENSTRUG00000014733)	snrnp27 (ENSTRUG00000014833)	MXD1 (ENSTRUG00000027715)	zgc:65851 (ENSTRUG00000014904)	cds2 (ENSTRUG00000014941)	arhgap25 (ENSTRUG00000014999)	bmp10 (ENSTRUG00000020938)	ENSTRUG00000024141	ERLIN2 (ENSTRUG00000021046)	znf703 (ENSTRUG00000015121)	TIA1 (ENSTRUG00000015136)	rchy1 (ENSTRUG00000015210)	ENSTRUG00000020510	smad2 (ENSTRUG00000015216) ##22	ENSTRUG00000015252	ENSTRUG00000033477	ENSTRUG00000015259	zbtb26 (ENSTRUG00000024078)	p2rx4b (ENSTRUG00000015294)	gucd1 (ENSTRUG00000020017)	ADORA2A (ENSTRUG00000029459)	si:dkey-91m11.5 (ENSTRUG00000015467)	ift81 (ENSTRUG00000015580)	ENSTRUG00000015616	anapc7 (ENSTRUG00000015749)	ENSTRUG00000022600	rad9b (ENSTRUG00000021895)	pptc7a (ENSTRUG00000020310)	PPP1CA (ENSTRUG00000015811)
Tetraodon	MODERN SPECIES	3	NPFFR1 (ENSTNIG00000016771)	hk2 (ENSTNIG00000016772)	figla (ENSTNIG00000016773)	add2 (ENSTNIG00000016774)	snrnp27 (ENSTNIG00000016775)	MXD1 (ENSTNIG00000000414)	cds2 (ENSTNIG00000011427)	arhgap25 (ENSTNIG00000011428)	bmp10 (ENSTNIG00000011429)	ENSTNIG00000011430	ERLIN2 (ENSTNIG00000011431)	znf703 (ENSTNIG00000011432)	ENSTNIG00000011433	rchy1 (ENSTNIG00000011434)	ENSTNIG00000011435	smad2 (ENSTNIG00000011436) ##22	ENSTNIG00000011437	zbtb26 (ENSTNIG00000011438)	p2rx4b (ENSTNIG00000011439)	gucd1 (ENSTNIG00000011440)	upb1 (ENSTNIG00000011441)	adora2aa (ENSTNIG00000011442)	specc1la (ENSTNIG00000011443)	si:dkey-91m11.5 (ENSTNIG00000011444)	ift81 (ENSTNIG00000011445)	ENSTNIG00000011446	anapc7 (ENSTNIG00000011447)	ENSTNIG00000011448	ENSTNIG00000011449	pptc7a (ENSTNIG00000011450)	ENSTNIG00000011451
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Pomacentridae	ANCESTRAL SPECIES		ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00940000155668.i.b	ENSGT00950000182950.D
Amphiprion	ANCESTRAL SPECIES	18	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Orange clownfish	MODERN SPECIES	19	hk2 (ENSAPEG00000003103)	figla (ENSAPEG00000002822)	add2 (ENSAPEG00000002806)	snrnp27 (ENSAPEG00000002742)	MXD1 (ENSAPEG00000002731)	zgc:65851 (ENSAPEG00000002722)	cds2 (ENSAPEG00000002692)	arhgap25 (ENSAPEG00000002676)	bmp10 (ENSAPEG00000002643)	ENSAPEG00000002634	ERLIN2 (ENSAPEG00000002583)	znf703 (ENSAPEG00000002555)	ENSAPEG00000002524	ENSAPEG00000002468	ENSAPEG00000002416	smad2 (ENSAPEG00000002366) ##22	IER3IP1 (ENSAPEG00000002338)	ENSAPEG00000002324	ENSAPEG00000002311	zbtb26 (ENSAPEG00000002302)	p2rx4b (ENSAPEG00000002177)	gucd1 (ENSAPEG00000002110)	upb1 (ENSAPEG00000002088)	ENSAPEG00000002078	adora2aa (ENSAPEG00000002062)	specc1la (ENSAPEG00000002048)	si:dkey-91m11.5 (ENSAPEG00000001963)	ift81 (ENSAPEG00000001879)	ENSAPEG00000001821	anapc7 (ENSAPEG00000001774)	ENSAPEG00000001740
Clown anemonefish	MODERN SPECIES	2299												ENSAOCG00000011152	ENSAOCG00000011133	ENSAOCG00000011068	ENSAOCG00000011033	smad2 (ENSAOCG00000001841) ##22	IER3IP1 (ENSAOCG00000000685)	ENSAOCG00000010887	ENSAOCG00000010872	zbtb26 (ENSAOCG00000010836)	p2rx4b (ENSAOCG00000010827)
Spiny chromis	MODERN SPECIES	1233													ENSAPOG00000001876	ENSAPOG00000001850	ENSAPOG00000001829	smad2 (ENSAPOG00000001781) ##22	IER3IP1 (ENSAPOG00000001762)	ENSAPOG00000000031	ENSAPOG00000001744	ENSAPOG00000001723
Bicolor damselfish	MODERN SPECIES	721			add2 (ENSSPAG00000004761)	snrnp27 (ENSSPAG00000004717)	MXD1 (ENSSPAG00000004702)	zgc:65851 (ENSSPAG00000004690)	cds2 (ENSSPAG00000004640)	arhgap25 (ENSSPAG00000004619)	bmp10 (ENSSPAG00000004596)	ENSSPAG00000004587	ERLIN2 (ENSSPAG00000004575)	znf703 (ENSSPAG00000004567)	ENSSPAG00000004511	ENSSPAG00000004472	ENSSPAG00000004424	smad2 (ENSSPAG00000004370) ##22	IER3IP1 (ENSSPAG00000004320)	ENSSPAG00000004306	ENSSPAG00000004280
Cichlidae	ANCESTRAL SPECIES	29	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	26	ENSGT00950000182787.E.d.e.a.p	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	28	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Haplochromini	ANCESTRAL SPECIES	30	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892.d	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT01050000245010
Burton s mouthbrooder	MODERN SPECIES	561															ENSHBUG00000001753	smad2 (ENSHBUG00000001737) ##22	IER3IP1 (ENSHBUG00000001718)	ENSHBUG00000001712	ENSHBUG00000001706	zbtb26 (ENSHBUG00000001692)	p2rx4b (ENSHBUG00000001664)	gucd1 (ENSHBUG00000001617)	upb1 (ENSHBUG00000001606)	adora2aa (ENSHBUG00000001594)	specc1la (ENSHBUG00000000009)	si:dkey-91m11.5 (ENSHBUG00000001577)	ift81 (ENSHBUG00000001544)	ENSHBUG00000001521	anapc7 (ENSHBUG00000001499)	ENSHBUG00000001493	ENSHBUG00000001488
Haplochromini_A	ANCESTRAL SPECIES	32	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892.d	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT01050000245010
Haplochromini_B	ANCESTRAL SPECIES	44	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892.d	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT01050000245010
Eastern happy	MODERN SPECIES	3	snrnp27 (ENSACLG00000002859)	MXD1 (ENSACLG00000002845)	zgc:65851 (ENSACLG00000002813)	ENSACLG00000002803	cds2 (ENSACLG00000002693)	arhgap25 (ENSACLG00000002683)	bmp10 (ENSACLG00000002672)	ENSACLG00000002628	ENSACLG00000002614	ERLIN2 (ENSACLG00000002557)	ENSACLG00000002383	znf703 (ENSACLG00000002355)	ENSACLG00000002317	rchy1 (ENSACLG00000002264)	ENSACLG00000002164	smad2 (ENSACLG00000002104) ##22	IER3IP1 (ENSACLG00000001771)	ENSACLG00000001755	ENSACLG00000001711	zbtb26 (ENSACLG00000001703)	p2rx4b (ENSACLG00000001690)	gucd1 (ENSACLG00000001675)	upb1 (ENSACLG00000001633)	adora2aa (ENSACLG00000001615)	specc1la (ENSACLG00000001600)	si:dkey-91m11.5 (ENSACLG00000001482)	ift81 (ENSACLG00000001422)	ENSACLG00000001375	anapc7 (ENSACLG00000001331)	ENSACLG00000001288	ENSACLG00000001276
Zebra mbuna	MODERN SPECIES	1094	hk2 (ENSMZEG00005001539)	figla (ENSMZEG00005001561)	add2 (ENSMZEG00005001590)	snrnp27 (ENSMZEG00005001618)	MXD1 (ENSMZEG00005001624)	zgc:65851 (ENSMZEG00005001648)	cds2 (ENSMZEG00005001656)	arhgap25 (ENSMZEG00005001711)	bmp10 (ENSMZEG00005001718)	ENSMZEG00005001721	ERLIN2 (ENSMZEG00005001728)	znf703 (ENSMZEG00005001762)	ENSMZEG00005001792	rchy1 (ENSMZEG00005001846)	ENSMZEG00005001895	smad2 (ENSMZEG00005001954) ##22	IER3IP1 (ENSMZEG00005001988)	ENSMZEG00005002003	ENSMZEG00005002014	zbtb26 (ENSMZEG00005002025)	p2rx4b (ENSMZEG00005002040)	gucd1 (ENSMZEG00005002152)	upb1 (ENSMZEG00005002166)	adora2aa (ENSMZEG00005002189)	specc1la (ENSMZEG00005002203)	si:dkey-91m11.5 (ENSMZEG00005002251)	ift81 (ENSMZEG00005002321)	ENSMZEG00005002369	anapc7 (ENSMZEG00005002432)	ENSMZEG00005002462	ENSMZEG00005002502
P. nyererei	MODERN SPECIES	467	hk2 (ENSPNYG00000008779)	figla (ENSPNYG00000008754)	add2 (ENSPNYG00000008709)	snrnp27 (ENSPNYG00000008692)	MXD1 (ENSPNYG00000008669)	zgc:65851 (ENSPNYG00000008635)	cds2 (ENSPNYG00000008572)	arhgap25 (ENSPNYG00000008542)	bmp10 (ENSPNYG00000008532)	ENSPNYG00000008497	ERLIN2 (ENSPNYG00000008461)	znf703 (ENSPNYG00000008429)	ENSPNYG00000008384	rchy1 (ENSPNYG00000008332)	ENSPNYG00000008287	smad2 (ENSPNYG00000008249) ##22	IER3IP1 (ENSPNYG00000008229)	ENSPNYG00000008219	ENSPNYG00000008199	ENSPNYG00000008170	zbtb26 (ENSPNYG00000008162)	p2rx4b (ENSPNYG00000008055)	gucd1 (ENSPNYG00000008005)	upb1 (ENSPNYG00000007983)	adora2aa (ENSPNYG00000007971)	specc1la (ENSPNYG00000007952)	si:dkey-91m11.5 (ENSPNYG00000007888)	ift81 (ENSPNYG00000007840)	ENSPNYG00000007734	anapc7 (ENSPNYG00000007681)	ENSPNYG00000007659
Lyretail cichlid	MODERN SPECIES	340	figla (ENSNBRG00000009826)	add2 (ENSNBRG00000009846)	snrnp27 (ENSNBRG00000009891)	MXD1 (ENSNBRG00000009903)	ENSNBRG00000009918	zgc:65851 (ENSNBRG00000009929)	cds2 (ENSNBRG00000009944)	arhgap25 (ENSNBRG00000009978)	bmp10 (ENSNBRG00000010031)	ENSNBRG00000010066	ERLIN2 (ENSNBRG00000010124)	znf703 (ENSNBRG00000010152)	ENSNBRG00000010172	ENSNBRG00000010201	ENSNBRG00000010222	smad2 (ENSNBRG00000010263) ##22	IER3IP1 (ENSNBRG00000010285)	ENSNBRG00000010296	ENSNBRG00000010304	zbtb26 (ENSNBRG00000010364)	p2rx4b (ENSNBRG00000010380)	gucd1 (ENSNBRG00000010476)	upb1 (ENSNBRG00000010516)	ENSNBRG00000010541	adora2aa (ENSNBRG00000010557)	specc1la (ENSNBRG00000010612)	si:dkey-91m11.5 (ENSNBRG00000010650)	ENSNBRG00000010693	ift81 (ENSNBRG00000010706)	ENSNBRG00000010754	ENSNBRG00000010814
Nile tilapia	MODERN SPECIES	3	figla (ENSONIG00000015856)	add2 (ENSONIG00000015858)	snrnp27 (ENSONIG00000015869)	MXD1 (ENSONIG00000015871)	zgc:65851 (ENSONIG00000015873)	ENSONIG00000036935	cds2 (ENSONIG00000015879)	arhgap25 (ENSONIG00000015885)	bmp10 (ENSONIG00000036354)	ENSONIG00000015888	ERLIN2 (ENSONIG00000015889)	znf703 (ENSONIG00000041135)	ENSONIG00000015897	rchy1 (ENSONIG00000015900)	ENSONIG00000015906	smad2 (ENSONIG00000015908) ##22	IER3IP1 (ENSONIG00000037020)	ENSONIG00000039959	ENSONIG00000015911	zbtb26 (ENSONIG00000020657)	p2rx4b (ENSONIG00000015912)	gucd1 (ENSONIG00000037363)	upb1 (ENSONIG00000015923)	ENSONIG00000040802	adora2a (ENSONIG00000032812)	specc1la (ENSONIG00000015931)	si:dkey-91m11.5 (ENSONIG00000015935)	ift81 (ENSONIG00000015939)	ENSONIG00000015946	anapc7 (ENSONIG00000015954)	ENSONIG00000015958
Midas cichlid	MODERN SPECIES	345	hk2 (ENSACIG00000014732)	figla (ENSACIG00000014681)	add2 (ENSACIG00000014653)	snrnp27 (ENSACIG00000014580)	MXD1 (ENSACIG00000014558)	zgc:65851 (ENSACIG00000014550)	cds2 (ENSACIG00000014521)	arhgap25 (ENSACIG00000014462)	bmp10 (ENSACIG00000014450)	ENSACIG00000014421	ERLIN2 (ENSACIG00000014403)	znf703 (ENSACIG00000014396)	ENSACIG00000014376	ENSACIG00000014359	ENSACIG00000014322	smad2 (ENSACIG00000014310) ##22	IER3IP1 (ENSACIG00000014275)	ogfod2 (ENSACIG00000014244)	SLC4A5 (ENSACIG00000014205)	ENSACIG00000014186	zgc:110329 (ENSACIG00000014163)	TACR1 (ENSACIG00000014147)
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT00390000005767.b
NAME_4	ANCESTRAL SPECIES	43	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT00390000005767.b	ENSGT00390000011937.g.b
Mummichog	MODERN SPECIES	236	ENSFHEG00000006426	hk2 (ENSFHEG00000006410)	figla (ENSFHEG00000006389)	add2 (ENSFHEG00000006376)	ERLIN2 (ENSFHEG00000006359)	ENSFHEG00000006318	arhgap25 (ENSFHEG00000006308)	cds2 (ENSFHEG00000006284)	zgc:65851 (ENSFHEG00000006242)	MXD1 (ENSFHEG00000006222)	snrnp27 (ENSFHEG00000006199)	znf703 (ENSFHEG00000006178)	ENSFHEG00000006161	ENSFHEG00000006102	ENSFHEG00000006054	smad2 (ENSFHEG00000006030) ##22	IER3IP1 (ENSFHEG00000005976)	ENSFHEG00000005960	zbtb26 (ENSFHEG00000005871)	p2rx4b (ENSFHEG00000005860)	gucd1 (ENSFHEG00000005758)	upb1 (ENSFHEG00000005749)	adora2aa (ENSFHEG00000005712)	specc1la (ENSFHEG00000005689)	si:dkey-91m11.5 (ENSFHEG00000005512)	ift81 (ENSFHEG00000005424)	ENSFHEG00000005386	anapc7 (ENSFHEG00000005286)	ENSFHEG00000005269	rad9b (ENSFHEG00000005243)	pptc7a (ENSFHEG00000005238)
Sheepshead minnow	MODERN SPECIES	918													TIA1 (ENSCVAG00000015489)	rchy1 (ENSCVAG00000015523)	ENSCVAG00000015535	smad2 (ENSCVAG00000015563) ##22	IER3IP1 (ENSCVAG00000015567)	ENSCVAG00000000967	zbtb26 (ENSCVAG00000015601)	p2rx4b (ENSCVAG00000015605)	gucd1 (ENSCVAG00000015610)	upb1 (ENSCVAG00000015647)	adora2aa (ENSCVAG00000015653)	specc1la (ENSCVAG00000015815)	si:dkey-91m11.5 (ENSCVAG00000015928)	ENSCVAG00000015949
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00950000182787.C.p	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT00390000005767.b
Poecilia	ANCESTRAL SPECIES	3	ENSGT00950000182787.E.d.e.a	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT00390000005767.b
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000153499.b.a.g ##22
Amazon molly	MODERN SPECIES	417	ENSPFOG00000003316	figla (ENSPFOG00000003349)	add2 (ENSPFOG00000003378)	ERLIN2 (ENSPFOG00000003812)	ENSPFOG00000004009	bmp10 (ENSPFOG00000004013)	ENSPFOG00000004027	cds2 (ENSPFOG00000004128)	zgc:65851 (ENSPFOG00000004325)	MXD1 (ENSPFOG00000004367)	snrnp27 (ENSPFOG00000004436)	znf703 (ENSPFOG00000004495)	ENSPFOG00000004539	ENSPFOG00000004656	ENSPFOG00000004773	smad2 (ENSPFOG00000004885) ##22
Sailfin molly	MODERN SPECIES	2988													TIA1 (ENSPLAG00000013231)	ENSPLAG00000000312	ENSPLAG00000013153	smad2 (ENSPLAG00000013136) ##22
NAME_6	ANCESTRAL SPECIES	113	ENSGT00950000182787.E.d.e.a	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00940000165184	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a.h ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b	ENSGT00390000005767.b
Amazon molly	MODERN SPECIES	559															ENSPFOG00000001278	smad2 (ENSPFOG00000001408) ##22	ENSPFOG00000001474	ENSPFOG00000001523	zbtb26 (ENSPFOG00000001590)	p2rx4b (ENSPFOG00000001730)	gucd1 (ENSPFOG00000002062)	upb1 (ENSPFOG00000002146)	adora2aa (ENSPFOG00000002320)	specc1la (ENSPFOG00000002329)	si:dkey-91m11.5 (ENSPFOG00000002503)	ift81 (ENSPFOG00000003076)	ATP2A1 (ENSPFOG00000003392)	anapc7 (ENSPFOG00000004609)	ENSPFOG00000004734	rad9b (ENSPFOG00000004776)	pptc7a (ENSPFOG00000004803)
Sailfin molly	MODERN SPECIES	1748															ENSPLAG00000008552	smad2 (ENSPLAG00000008534) ##22	ENSPLAG00000008489	ENSPLAG00000008476	ENSPLAG00000008461	zbtb26 (ENSPLAG00000008402)	p2rx4b (ENSPLAG00000008388)	gucd1 (ENSPLAG00000008265)	upb1 (ENSPLAG00000008256)	adora2aa (ENSPLAG00000008221)
Guppy	MODERN SPECIES	461	ENSPREG00000017715	figla (ENSPREG00000017683)	add2 (ENSPREG00000017646)	ERLIN2 (ENSPREG00000017620)	ENSPREG00000017612	bmp10 (ENSPREG00000017589)	ENSPREG00000017571	cds2 (ENSPREG00000017498)	zgc:65851 (ENSPREG00000017447)	MXD1 (ENSPREG00000017428)	ENSPREG00000017403	znf703 (ENSPREG00000017386)	ENSPREG00000017346	ENSPREG00000017308	ENSPREG00000017278	smad2 (ENSPREG00000017247) ##22	ENSPREG00000017231	ENSPREG00000017220	ENSPREG00000017197	ENSPREG00000017176	golph3a (ENSPREG00000017148)	ENSPREG00000017130	ENSPREG00000017103	isl1a (ENSPREG00000017077)	TOP3B (ENSPREG00000017020)	ENSPREG00000016987	ENSPREG00000016969	ENSPREG00000016907	niban2b (ENSPREG00000016862)	stxbp1b (ENSPREG00000016828)	WHRN (ENSPREG00000016804)
Platyfish	MODERN SPECIES	2	figla (ENSXMAG00000004676)	add2 (ENSXMAG00000004651)	ERLIN2 (ENSXMAG00000004633)	ENSXMAG00000004631	bmp10 (ENSXMAG00000028275)	ENSXMAG00000004613	cds2 (ENSXMAG00000004583)	zgc:65851 (ENSXMAG00000004574)	MXD1 (ENSXMAG00000029706)	snrnp27 (ENSXMAG00000027366)	znf703 (ENSXMAG00000004564)	ENSXMAG00000026211	ENSXMAG00000023528	rchy1 (ENSXMAG00000028824)	ENSXMAG00000004512	smad2 (ENSXMAG00000004505) ##22	IER3IP1 (ENSXMAG00000004503)	ENSXMAG00000029308	ENSXMAG00000004493	zbtb26 (ENSXMAG00000019575)	p2rx4b (ENSXMAG00000004452)	gucd1 (ENSXMAG00000004438)	upb1 (ENSXMAG00000004411)	adora2aa (ENSXMAG00000004409)	specc1la (ENSXMAG00000004383)	si:dkey-91m11.5 (ENSXMAG00000004350)	ift81 (ENSXMAG00000004329)	ATP2A1 (ENSXMAG00000004244)	anapc7 (ENSXMAG00000004226)	ENSXMAG00000021137	ENSXMAG00000004205
Aplocheiloidei	ANCESTRAL SPECIES	20	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT00940000178089	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Turquoise killifish	MODERN SPECIES	1627	ENSNFUG00015024267	figla (ENSNFUG00015024259)	ADD2 (ENSNFUG00015024247)	ERLIN2 (ENSNFUG00015024226)	ENSNFUG00015024221	bmp10 (ENSNFUG00015024219)	ARHGAP25 (ENSNFUG00015024216)	CDS2 (ENSNFUG00015024073)	Nfu_g_1_009071 (ENSNFUG00015024058)	MXD1 (ENSNFUG00015024056)	SNRNP27 (ENSNFUG00015024051)	ZNF703 (ENSNFUG00015024050)	ENSNFUG00015024031	rchy1 (ENSNFUG00015024027)	ENSNFUG00015024019	SMAD2 (ENSNFUG00015023992) ##22	IER3IP1 (ENSNFUG00015023990)	ENSNFUG00015023989	ENSNFUG00015023988	ENSNFUG00015023984	ZBTB26 (ENSNFUG00015023983)	p2rx4b (ENSNFUG00015023982)	GUCD1 (ENSNFUG00015023978)	MTMR3 (ENSNFUG00015023350)	CUX2 (ENSNFUG00015023283)	myl2b (ENSNFUG00015023269)	PPP1CA (ENSNFUG00015023258)	pptc7a (ENSNFUG00015023252)	ENSNFUG00015023249	ENSNFUG00015023243	ENSNFUG00015023241
Mangrove rivulus	MODERN SPECIES	30	hk2 (ENSKMAG00000008651)	figla (ENSKMAG00000008566)	add2 (ENSKMAG00000008526)	ERLIN2 (ENSKMAG00000008450)	ENSKMAG00000008432	bmp10 (ENSKMAG00000008412)	arhgap25 (ENSKMAG00000008391)	cds2 (ENSKMAG00000008314)	zgc:65851 (ENSKMAG00000008283)	ENSKMAG00000008253	snrnp27 (ENSKMAG00000008233)	znf703 (ENSKMAG00000008217)	TIA1 (ENSKMAG00000008202)	rchy1 (ENSKMAG00000008163)	ENSKMAG00000008095	smad2 (ENSKMAG00000008041) ##22	IER3IP1 (ENSKMAG00000008013)	si:ch73-130a3.4 (ENSKMAG00000007988)	ENSKMAG00000007964	zbtb26 (ENSKMAG00000007952)	p2rx4b (ENSKMAG00000007838)	gucd1 (ENSKMAG00000007796)	upb1 (ENSKMAG00000007759)	ENSKMAG00000007740	adora2aa (ENSKMAG00000007729)	specc1la (ENSKMAG00000007691)	si:dkey-91m11.5 (ENSKMAG00000007584)	ift81 (ENSKMAG00000007475)	ENSKMAG00000007392	anapc7 (ENSKMAG00000007339)	ENSKMAG00000007321
Oryzias	ANCESTRAL SPECIES	7	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT01000000218931	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00950000182787.C	ENSGT00440000033552	ENSGT00940000159299	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00390000014618.b.d	ENSGT00940000154962.A.a.a	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT01000000218931	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000155668.i.b	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Japanese Medaka HdrR	MODERN SPECIES	23	figla (ENSORLG00000015451)	add2 (ENSORLG00000030229)	snrnp27 (ENSORLG00000015459)	MXD1 (ENSORLG00000026050)	zgc:65851 (ENSORLG00000015480)	cds2 (ENSORLG00000015503)	arhgap25 (ENSORLG00000015524)	bmp10 (ENSORLG00000015531)	ENSORLG00000029762	ENSORLG00000015548	znf703 (ENSORLG00000015556)	ENSORLG00000027415	TIA1 (ENSORLG00000015642)	rchy1 (ENSORLG00000024685)	ENSORLG00000015660	smad2 (ENSORLG00000015683) ##22	IER3IP1 (ENSORLG00000024123)	ENSORLG00000025484	ENSORLG00000029859	zbtb26 (ENSORLG00000015695)	p2rx4b (ENSORLG00000015741)	gucd1 (ENSORLG00000015750)	upb1 (ENSORLG00000015770)	adora2aa (ENSORLG00000025983)	specc1la (ENSORLG00000015790)	ENSORLG00000015799	ift81 (ENSORLG00000015815)	ENSORLG00000015888	anapc7 (ENSORLG00000015911)	ENSORLG00000029278	rad9b (ENSORLG00000024841)
Chinese medaka	MODERN SPECIES	223													TIA1 (ENSOSIG00000023016)	rchy1 (ENSOSIG00000023001)	ENSOSIG00000022974	smad2 (ENSOSIG00000022965) ##22	IER3IP1 (ENSOSIG00000022957)	ENSOSIG00000022952	ENSOSIG00000022946	p2rx4b (ENSOSIG00000022841)	gucd1 (ENSOSIG00000022804)	adora2aa (ENSOSIG00000022795)	specc1la (ENSOSIG00000022774)	ENSOSIG00000022760	si:dkey-91m11.5 (ENSOSIG00000021051)	ift81 (ENSOSIG00000020667)	ENSOSIG00000019151	anapc7 (ENSOSIG00000019032)	ENSOSIG00000019018	ENSOSIG00000019013	rad9b (ENSOSIG00000019006)
Oryzias_b	ANCESTRAL SPECIES	61														ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.a	ENSGT00940000175330	ENSGT00390000013892	ENSGT00940000157920.a	ENSGT01020000230351.D.a.a.a	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT01000000218931	ENSGT00940000153491.b.a.l	ENSGT00390000000999	ENSGT00940000159895	ENSGT00950000182950.D	ENSGT00940000165298.a.b
Indian medaka	MODERN SPECIES	11	ENSOMEG00000020545	zgc:65851 (ENSOMEG00000020571)	cds2 (ENSOMEG00000020600)	arhgap25 (ENSOMEG00000020639)	bmp10 (ENSOMEG00000020667)	ENSOMEG00000020684	ERLIN2 (ENSOMEG00000020793)	znf703 (ENSOMEG00000020827)	TIA1 (ENSOMEG00000020931)	tmem175 (ENSOMEG00000020978)	ENSOMEG00000021032	ENSOMEG00000021057	ENSOMEG00000021093	rchy1 (ENSOMEG00000021136)	ENSOMEG00000021184	smad2 (ENSOMEG00000021264) ##22	IER3IP1 (ENSOMEG00000000664)	ENSOMEG00000021286	ENSOMEG00000021314	zbtb26 (ENSOMEG00000021329)	p2rx4b (ENSOMEG00000021354)	gucd1 (ENSOMEG00000021379)	upb1 (ENSOMEG00000021412)	adora2aa (ENSOMEG00000021428)	specc1la (ENSOMEG00000021510)	ENSOMEG00000021535	si:dkey-91m11.5 (ENSOMEG00000021614)	ift81 (ENSOMEG00000021713)	ATP2A1 (ENSOMEG00000021867)	anapc7 (ENSOMEG00000021932)	ENSOMEG00000021956
Javanese ricefish	MODERN SPECIES	23	nudt12 (ENSOJAG00000010912)	ENSOJAG00000010956	ENSOJAG00000010965	HIRA (ENSOJAG00000011013)	slc2a8 (ENSOJAG00000012106)	ENSOJAG00000012225	mymk (ENSOJAG00000012263)	ADAMTSL2 (ENSOJAG00000012310)	ENSOJAG00000012622	FAM163B (ENSOJAG00000012644)	ENSOJAG00000012657	ENSOJAG00000012683	ENSOJAG00000012698	ENSOJAG00000012748	ENSOJAG00000012765	smad2 (ENSOJAG00000013173) ##22	ENSOJAG00000013343	ENSOJAG00000013360	zbtb26 (ENSOJAG00000013391)	p2rx4b (ENSOJAG00000013396)	gucd1 (ENSOJAG00000013521)	upb1 (ENSOJAG00000013557)	adora2aa (ENSOJAG00000013663)	specc1la (ENSOJAG00000013685)	ENSOJAG00000013904	si:dkey-91m11.5 (ENSOJAG00000014051)	ENSOJAG00000016230	ift81 (ENSOJAG00000016262)	ENSOJAG00000016379	anapc7 (ENSOJAG00000017740)	ENSOJAG00000017768
Pinecone sodierfish	MODERN SPECIES	23	hk2 (ENSMMDG00005021996)	figla (ENSMMDG00005023421)	add2 (ENSMMDG00005023423)	snrnp27 (ENSMMDG00005023424)	MXD1 (ENSMMDG00005023425)	zgc:65851 (ENSMMDG00005023430)	cds2 (ENSMMDG00005023448)	arhgap25 (ENSMMDG00005023523)	bmp10 (ENSMMDG00005023527)	ENSMMDG00005023528	ERLIN2 (ENSMMDG00005023537)	znf703 (ENSMMDG00005023555)	ENSMMDG00005023559	ENSMMDG00005023568	ENSMMDG00005023571	smad2 (ENSMMDG00005023574) ##22	ENSMMDG00005023577	ENSMMDG00005000451	ENSMMDG00005000456	zbtb26 (ENSMMDG00005000459)	p2rx4b (ENSMMDG00005000502)	gucd1 (ENSMMDG00005000678)	upb1 (ENSMMDG00005000695)	ENSMMDG00005000717	adora2aa (ENSMMDG00005000720)	specc1la (ENSMMDG00005000733)	ENSMMDG00005000780	si:dkey-91m11.5 (ENSMMDG00005000871)	ift81 (ENSMMDG00005007342)	ENSMMDG00005007394	anapc7 (ENSMMDG00005011727)
Cod	MODERN SPECIES	19	pgam5 (ENSGMOG00000007688)	ANKLE2 (ENSGMOG00000007676)	golga3 (ENSGMOG00000007665)	chfr (ENSGMOG00000007630)	ENSGMOG00000034511	ENSGMOG00000007611	atad1a (ENSGMOG00000007603)	ENSGMOG00000035548	tnksb (ENSGMOG00000007567)	ENSGMOG00000007555	ENSGMOG00000016535	atp5meb (ENSGMOG00000030132)	kcnv2b (ENSGMOG00000029327)	ENSGMOG00000007494	ENSGMOG00000007450	ENSGMOG00000007444 ##22	ENSGMOG00000025457	limk2 (ENSGMOG00000026617)	si:ch211-225b11.1 (ENSGMOG00000000487)	wscd2 (ENSGMOG00000017841)	cmklr1 (ENSGMOG00000019857)	cmklr1 (ENSGMOG00000034344)	ficd (ENSGMOG00000017853)	sart3 (ENSGMOG00000017859)	ENSGMOG00000017905	ENSGMOG00000025849	ENSGMOG00000020422	ENSGMOG00000032177	VPS13A (ENSGMOG00000005126)	ENSGMOG00000005096	ENSGMOG00000005069
Protacanthopterygii	ANCESTRAL SPECIES	16	ENSGT00440000033805	ENSGT00940000157611	ENSGT00940000153636.b	ENSGT00940000155024.b	ENSGT00940000157366	ENSGT00940000160905	ENSGT00390000000860.b.a	ENSGT01090000260335	ENSGT01030000234528.B.a.b	ENSGT00950000182913.A.a.a	ENSGT00940000156168.A	ENSGT00940000154078.a.b	ENSGT00940000155674.nc	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00510000047648.b.b.a	ENSGT00390000013892	ENSGT00390000013037	ENSGT00940000160867	ENSGT00940000164390.f	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b	ENSGT01030000234535.E.c	ENSGT00940000156423.i	ENSGT00390000013339	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	350														ENSGT00390000008853.g	ENSGT00940000162544.c.b.d	ENSGT00940000153499.b.a.i ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00390000013037	ENSGT00940000160867.a	ENSGT00940000157449.b.f	ENSGT01030000234535.E.c.c	ENSGT00940000156423.i.a	ENSGT00390000013339.d	ENSGT00940000153372.A.e.a.b.a.l	ENSGT00940000155332.B.x.b	ENSGT00940000155332.B.x.a	ENSGT00940000158944	ENSGT00950000182938.b.b.b.b.b.b.h.a.a	ENSGT00940000156411.od.b.b	ENSGT00940000153771.B.w
Salmoninae_a	ANCESTRAL SPECIES	70	ENSGT00610000087464	ENSGT00390000017130.m.a	ENSGT00440000033805.ib	ENSGT00940000157611.h	ENSGT00940000153636.b.nb	ENSGT00940000157366.j	ENSGT01000000220326	ENSGT00390000000860.b.a.d	ENSGT00940000156168.A.b	ENSGT00940000154078.a.b.b	ENSGT00940000155674.nc.b	ENSGT00510000051272.c	ENSGT00660000097043	ENSGT00390000008853.g	ENSGT00940000162544.c.b.d	ENSGT00940000153499.b.a.i ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00390000013037	ENSGT00940000160867.a	ENSGT00940000157449.b.f	ENSGT01030000234535.E.c.c	ENSGT00940000156423.i.a	ENSGT00390000013339.d	ENSGT00940000153372.A.e.a.b.a.l	ENSGT00940000155332.B.x.b	ENSGT00940000155332.B.x.a	ENSGT00940000158944	ENSGT00950000182938.b.b.b.b.b.b.h.a.a	ENSGT00940000156411.od.b.b	ENSGT00940000153771.B.w
Salmo	ANCESTRAL SPECIES	58	ENSGT00940000164966.b.b.e.a	ENSGT00610000087464	ENSGT00390000017130.m.a	ENSGT00440000033805.ib	ENSGT00940000157611.h	ENSGT00940000153636.b.nb	ENSGT00940000157366.j	ENSGT01000000220326	ENSGT00390000000860.b.a.d	ENSGT00940000156168.A.b	ENSGT00940000154078.a.b.b	ENSGT00940000155674.nc.b	ENSGT00510000051272.c	ENSGT00390000008853.g	ENSGT00940000162544.c.b.d	ENSGT00940000153499.b.a.i ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00390000013037	ENSGT00940000160867.a	ENSGT00940000157449.b.f	ENSGT01030000234535.E.c.c	ENSGT00940000156423.i.a	ENSGT00390000013339.d	ENSGT00940000153372.A.e.a.b.a.l	ENSGT00940000155332.B.x.b	ENSGT00940000155332.B.x.a	ENSGT00940000158944	ENSGT00950000182938.b.b.b.b.b.b.h.a.a	ENSGT00940000156411.od.b.b	ENSGT00940000153771.B.w
River trout	MODERN SPECIES	39	si:ch211-214j8.12 (ENSSTUG00000002902)	gda (ENSSTUG00000002932)	zgc:101016 (ENSSTUG00000003263)	abhd17b (ENSSTUG00000003286)	cemip2 (ENSSTUG00000003322)	TRPM3 (ENSSTUG00000003741)	ENSSTUG00000005241	fam219ab (ENSSTUG00000005254)	ENSSTUG00000005323	ela3l (ENSSTUG00000005327)	LZTS1 (ENSSTUG00000005364)	PDE4D (ENSSTUG00000005450)	ENSSTUG00000007111	rchy1 (ENSSTUG00000007116)	ENSSTUG00000007126	smad2 (ENSSTUG00000007182) ##22	IER3IP1 (ENSSTUG00000007295)	ENSSTUG00000007302	ENSSTUG00000007314	tal2 (ENSSTUG00000007378)	RAB27B (ENSSTUG00000007381)	ST8SIA3 (ENSSTUG00000007395)	CCNG2 (ENSSTUG00000007404)	ENSSTUG00000007419	scarb2a (ENSSTUG00000007507)	ENSSTUG00000007923	emb (ENSSTUG00000008057)	cplx4a (ENSSTUG00000008061)	ENSSTUG00000008069	coq2 (ENSSTUG00000008104)	mboat4 (ENSSTUG00000008108)
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000072549	gda (ENSSSAG00000072587)	abhd17b (ENSSSAG00000086404)	zgc:101016 (ENSSSAG00000086115)	cemip2 (ENSSSAG00000072688)	TRPM3 (ENSSSAG00000074397)	ENSSSAG00000083207	fam219ab (ENSSSAG00000079390)	ela3l (ENSSSAG00000079409)	ENSSSAG00000079416	ENSSSAG00000079424	ENSSSAG00000070856	ENSSSAG00000100376	ENSSSAG00000079513	ENSSSAG00000079529	ENSSSAG00000079561 ##22	ENSSSAG00000079570	ENSSSAG00000079582	ENSSSAG00000099969	ENSSSAG00000079624	ENSSSAG00000102494	ENSSSAG00000079633	ENSSSAG00000108535	ENSSSAG00000079656	ENSSSAG00000079663	ENSSSAG00000079684	ENSSSAG00000079772	emb (ENSSSAG00000079771)	ENSSSAG00000081775	COQ2 (ENSSSAG00000079775)	ENSSSAG00000079778
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00440000033805.ib	ENSGT00940000157611.h	ENSGT00940000153636.b.nb	ENSGT00940000157366.j	ENSGT01000000220326	ENSGT00390000000860.b.a.d	ENSGT01090000260335.a	ENSGT01030000234528.B.a.b	ENSGT00940000156168.A.b	ENSGT00940000154078.a.b.b	ENSGT00940000155674.nc.b	ENSGT00510000051272.c	ENSGT00660000097043	ENSGT00390000008853.g	ENSGT00940000162544.c.b.d	ENSGT00940000153499.b.a.i ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00390000013037	ENSGT00940000160867.a	ENSGT00940000157449.b.f	ENSGT01030000234535.E.c.c	ENSGT00940000156423.i.a	ENSGT00390000013339.d	ENSGT00940000153372.A.e.a.b.a.l	ENSGT00940000155332.B.x.a	ENSGT00940000158944	ENSGT00950000182938.b.b.b.b.b.b.h.a.a	ENSGT00940000156411.od.b.b	ENSGT00940000153771.B.w	ENSGT01030000234564.a.a.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00440000033805.ib	ENSGT00940000157611.h	ENSGT00940000153636.b.nb	ENSGT00940000157366.j	ENSGT01000000220326	ENSGT00390000000860.b.a.d	ENSGT01090000260335.a	ENSGT01030000234528.B.a.b	ENSGT00940000156168.A.b	ENSGT00940000154078.a.b.b	ENSGT00940000155674.nc.b	ENSGT00510000051272.c	ENSGT00660000097043	ENSGT00390000008853.g	ENSGT00940000162544.c.b.d	ENSGT00940000153499.b.a.i ##22	ENSGT00510000047648.b.b.b	ENSGT00940000175330	ENSGT00390000013037	ENSGT00940000160867.a	ENSGT00940000157449.b.f	ENSGT01030000234535.E.c.c	ENSGT00940000156423.i.a	ENSGT00390000013339.d	ENSGT00940000153372.A.e.a.b.a.l	ENSGT00940000155332.B.x.a	ENSGT00940000158944	ENSGT00950000182938.b.b.b.b.b.b.h.a.a	ENSGT00940000156411.od.b.b	ENSGT00940000153771.B.w	ENSGT01030000234564.a.a.b.b
Coho salmon	MODERN SPECIES	28	abhd17b (ENSOKIG00005017154)	cemip2 (ENSOKIG00005016919)	ENSOKIG00005016877	TRPM3 (ENSOKIG00005015639)	ENSOKIG00005015532	fam219ab (ENSOKIG00005015415)	ENSOKIG00005015404	ela3l (ENSOKIG00005015394)	ENSOKIG00005015386	LZTS1 (ENSOKIG00005015374)	ENSOKIG00005015370	PDE4D (ENSOKIG00005013730)	ENSOKIG00005013618	RCHY1 (ENSOKIG00005013601)	ENSOKIG00005013343	smad2 (ENSOKIG00005013227) ##22	IER3IP1 (ENSOKIG00005050615)	ENSOKIG00005050609	tal2 (ENSOKIG00005050606)	RAB27B (ENSOKIG00005050600)	ST8SIA3 (ENSOKIG00005050594)	CCNG2 (ENSOKIG00005050583)	ENSOKIG00005050574	scarb2a (ENSOKIG00005050562)	ENSOKIG00005050552	emb (ENSOKIG00005050544)	CPLX4 (ENSOKIG00005050543)	ENSOKIG00005050542	ENSOKIG00005050541	coq2 (ENSOKIG00005050538)	mboat4 (ENSOKIG00005050535)
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005029877	ENSOTSG00005029875	si:ch211-79k12.1 (ENSOTSG00005029872)	TRPM3 (ENSOTSG00005012711)	ENSOTSG00005012655	fam219ab (ENSOTSG00005012510)	ENSOTSG00005012506	ela3l (ENSOTSG00005012504)	ENSOTSG00005012503	LZTS1 (ENSOTSG00005012500)	PDE4D (ENSOTSG00005012120)	ENSOTSG00005012110	ENSOTSG00005012109	rchy1 (ENSOTSG00005012108)	ENSOTSG00005012095	smad2 (ENSOTSG00005012044) ##22	IER3IP1 (ENSOTSG00005012040)	ENSOTSG00005012038	ENSOTSG00005012033	tal2 (ENSOTSG00005012029)	RAB27B (ENSOTSG00005012027)	ST8SIA3 (ENSOTSG00005012026)	CCNG2 (ENSOTSG00005012021)	ENSOTSG00005012013	scarb2a (ENSOTSG00005011991)	ENSOTSG00005011181	emb (ENSOTSG00005011174)	cplx4a (ENSOTSG00005011170)	ENSOTSG00005011168	coq2 (ENSOTSG00005011165)	mboat4 (ENSOTSG00005011163)
Rainbow trout	MODERN SPECIES	2	abhd17b (ENSOMYG00000025849)	cemip2 (ENSOMYG00000025941)	TRPM3 (ENSOMYG00000026506)	ENSOMYG00000028893	fam219ab (ENSOMYG00000028908)	ENSOMYG00000028914	ela3l (ENSOMYG00000028947)	ENSOMYG00000028958	ENSOMYG00000028972	ENSOMYG00000029436	ENSOMYG00000030231	ENSOMYG00000030240	ENSOMYG00000075707	ENSOMYG00000030274	ENSOMYG00000030423	ENSOMYG00000030549 ##22	ENSOMYG00000030620	ENSOMYG00000030627	ENSOMYG00000030682	ENSOMYG00000030729	ENSOMYG00000030740	ENSOMYG00000030742	ENSOMYG00000030752	ENSOMYG00000030787	ENSOMYG00000030833	ENSOMYG00000030873	ENSOMYG00000030968	ENSOMYG00000031024	ENSOMYG00000053124	ENSOMYG00000031030	ENSOMYG00000031060
Huchen	MODERN SPECIES	421														rchy1 (ENSHHUG00000000233)	ENSHHUG00000000220	smad2 (ENSHHUG00000000127) ##22	IER3IP1 (ENSHHUG00000000105)	ENSHHUG00000000085	ENSHHUG00000000075	ENSHHUG00000000019	tal2 (ENSHHUG00000026953)	RAB27B (ENSHHUG00000026950)	ST8SIA3 (ENSHHUG00000026949)	CCNG2 (ENSHHUG00000026925)	ENSHHUG00000026912	scarb2a (ENSHHUG00000026888)	ENSHHUG00000026882	ENSHHUG00000026839	ENSHHUG00000026820	emb (ENSHHUG00000026805)	cplx4a (ENSHHUG00000026797)
Salmoninae	ANCESTRAL SPECIES	122	ENSGT00390000017130.m.b	ENSGT00440000033805.jb	ENSGT00940000157611.g	ENSGT00940000153636.b.ob	ENSGT00940000157366.i	ENSGT00940000160905	ENSGT00390000000860.b.a.c	ENSGT00950000182913.A.a.a	ENSGT00940000156168.A.a	ENSGT00940000154078.a.b.a	ENSGT00940000155674.nc.a	ENSGT00510000051272.d	ENSGT00390000008853.h	ENSGT00940000165184	ENSGT00940000162544.c.b.c	ENSGT00940000153499.b.a.j ##22	ENSGT00510000047648.b.b.a	ENSGT00390000013892	ENSGT00940000160867.b	ENSGT00940000164390.f	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b.e	ENSGT01030000234535.E.c.d	ENSGT00940000156423.i.b	ENSGT00390000013339.c	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a.k	ENSGT00940000157870.a.b	ENSGT00400000024763.t	ENSGT00530000063548.A
Huchen	MODERN SPECIES	151													ENSHHUG00000046438	rchy1 (ENSHHUG00000046402)	ENSHHUG00000046373	smad2 (ENSHHUG00000046304) ##22	IER3IP1 (ENSHHUG00000046298)	ENSHHUG00000046275	tal2 (ENSHHUG00000046270)	ENSHHUG00000046253	poli (ENSHHUG00000046243)	RAB27B (ENSHHUG00000046236)	ST8SIA3 (ENSHHUG00000046205)	CCNG2 (ENSHHUG00000046183)	ENSHHUG00000046162	zgc:158260 (ENSHHUG00000046154)	scarb2a (ENSHHUG00000046147)	PPEF2 (ENSHHUG00000046141)	ENSHHUG00000046139	ENSHHUG00000046137	ENSHHUG00000046131
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000157611.g	ENSGT00940000153636.b.ob	ENSGT00940000155024.b.a	ENSGT00940000157366.i	ENSGT00940000160905	ENSGT00390000000860.b.a.c	ENSGT01090000260335.b	ENSGT00950000182913.A.a.a	ENSGT00940000156168.A.a	ENSGT00940000154078.a.b.a	ENSGT00940000155674.nc.a	ENSGT00510000051272.d	ENSGT00390000008853.h	ENSGT00940000165184	ENSGT00940000162544.c.b.c	ENSGT00940000153499.b.a.j ##22	ENSGT00510000047648.b.b.a	ENSGT00390000013892	ENSGT00940000160867.b	ENSGT00940000164390.f	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b.e	ENSGT01030000234535.E.c.d	ENSGT00940000156423.i.b	ENSGT00390000013339.c	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a.k	ENSGT00940000157870.a.b	ENSGT00390000014810.b	ENSGT00940000155332.B.w
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000157611.g	ENSGT00940000153636.b.ob	ENSGT00940000157366.i	ENSGT00940000160905	ENSGT00390000000860.b.a.c	ENSGT01090000260335.b	ENSGT00950000182913.A.a.a	ENSGT00940000156168.A.a	ENSGT00940000154078.a.b.a	ENSGT00940000155674.nc.a	ENSGT00510000051272.d	ENSGT00390000008853.h	ENSGT00940000162544.c.b.c	ENSGT00940000153499.b.a.j ##22	ENSGT00510000047648.b.b.a	ENSGT00390000013892	ENSGT00940000160867.b	ENSGT00940000164390.f	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b.e	ENSGT01030000234535.E.c.d	ENSGT00940000156423.i.b	ENSGT00390000013339.c	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a.k	ENSGT00940000157870.a.b	ENSGT00400000024763.t	ENSGT00530000063548.A
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000054272	ENSOMYG00000048303	ENSOMYG00000072465	ENSOMYG00000077324	ENSOMYG00000028855	ENSOMYG00000067471	bco2l (ENSOMYG00000028942)	ENSOMYG00000029070	ENSOMYG00000054203	ENSOMYG00000029113	ENSOMYG00000029429	ENSOMYG00000073650	ENSOMYG00000029627	rchy1 (ENSOMYG00000029708)	ENSOMYG00000001415	ENSOMYG00000001654 ##22	yee9 (ENSOMYG00000001741)	ENSOMYG00000002000	ENSOMYG00000002040	tal2 (ENSOMYG00000002042)	ENSOMYG00000002139	ENSOMYG00000002179	ENSOMYG00000002096	ENSOMYG00000002202	ENSOMYG00000002210	ENSOMYG00000002319	ENSOMYG00000002372	zgc:158260 (ENSOMYG00000002441)	ENSOMYG00000002540	ENSOMYG00000002571	ENSOMYG00000002600
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000157611.g	ENSGT00940000153636.b.ob	ENSGT00940000157366.i	ENSGT00940000160905	ENSGT00390000000860.b.a.c	ENSGT01090000260335.b	ENSGT00950000182913.A.a.a	ENSGT00940000156168.A.a	ENSGT00940000154078.a.b.a	ENSGT00940000155674.nc.a	ENSGT00510000051272.d	ENSGT00390000008853.h	ENSGT00940000162544.c.b.c	ENSGT00940000153499.b.a.j ##22	ENSGT00510000047648.b.b.a	ENSGT00390000013892	ENSGT00940000160867.b	ENSGT00940000164390.f	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b.e	ENSGT01030000234535.E.c.d	ENSGT00940000156423.i.b	ENSGT00390000013339.c	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a.k	ENSGT00940000157870.a.b	ENSGT00400000024763.t	ENSGT00530000063548.A
Coho salmon	MODERN SPECIES	22	abhd17b (ENSOKIG00005007244)	cemip2 (ENSOKIG00005007326)	TRPM3 (ENSOKIG00005009060)	klf9 (ENSOKIG00005016675)	fam219ab (ENSOKIG00005016685)	ENSOKIG00005016711	ENSOKIG00005016715	bco2l (ENSOKIG00005016739)	ENSOKIG00005017118	ENSOKIG00005017125	LZTS1 (ENSOKIG00005017146)	PDE4D (ENSOKIG00005017188)	ENSOKIG00005017652	rchy1 (ENSOKIG00005017662)	ENSOKIG00005017721	ENSOKIG00005018000 ##22	IER3IP1 (ENSOKIG00005018072)	ENSOKIG00005018114	tal2 (ENSOKIG00005018288)	ENSOKIG00005018309	ENSOKIG00005018783	poli (ENSOKIG00005018897)	RAB27B (ENSOKIG00005018923)	ST8SIA3 (ENSOKIG00005018934)	CCNG2 (ENSOKIG00005018955)	ENSOKIG00005019001	zgc:158260 (ENSOKIG00005019036)	ENSOKIG00005019061	PPEF2 (ENSOKIG00005019133)	ENSOKIG00005019188	ENSOKIG00005019196
Chinook salmon	MODERN SPECIES	28	med27 (ENSOTSG00005011602)	NTNG2 (ENSOTSG00005011601)	endog (ENSOTSG00005011600)	DAB2IP (ENSOTSG00005011279)	phf19 (ENSOTSG00005011270)	traf1 (ENSOTSG00005011268)	FIBCD1 (ENSOTSG00005011267)	ENSOTSG00005011258	ENSOTSG00005011255	fnbp1a (ENSOTSG00005011138)	si:ch211-248e11.2 (ENSOTSG00005011133)	olfm1a (ENSOTSG00005011132)	ENSOTSG00005011129	ENSOTSG00005047527	ENSOTSG00005047517	smad2 (ENSOTSG00005047499) ##22	IER3IP1 (ENSOTSG00005047498)	ENSOTSG00005047497	ENSOTSG00005047494	UNC5C (ENSOTSG00005047466)	ENSOTSG00005047464	ENSOTSG00005047462	cemip2 (ENSOTSG00005047327)	abhd17b (ENSOTSG00005047302)	zgc:101016 (ENSOTSG00005047299)	gda (ENSOTSG00005047297)	zfand5a (ENSOTSG00005047295)	tmc2b (ENSOTSG00005047294)	cyp1d1 (ENSOTSG00005047075)	anxa1a (ENSOTSG00005047044)	anxa1a (ENSOTSG00005046981)
Salmo	ANCESTRAL SPECIES		ENSGT00940000164966.b.b.f	ENSGT00390000017130.m.b	ENSGT00440000033805.jb	ENSGT00940000157611.g	ENSGT00940000153636.b.ob	ENSGT00940000157366.i	ENSGT00940000160905	ENSGT00390000000860.b.a.c	ENSGT01090000260335.b	ENSGT00950000182913.A.a.a	ENSGT00940000156168.A.a	ENSGT00940000154078.a.b.a	ENSGT00940000155674.nc.a	ENSGT00940000165184	ENSGT00940000162544.c.b.c	ENSGT00940000153499.b.a.j ##22	ENSGT00510000047648.b.b.a	ENSGT00390000013892	ENSGT00940000160867.b	ENSGT00940000164390.f	ENSGT00940000167497	ENSGT00940000159487	ENSGT00940000157449.b.e	ENSGT01030000234535.E.c.d	ENSGT00940000156423.i.b	ENSGT00390000013339.c	ENSGT00940000165114	ENSGT00940000153372.A.e.a.b.a.k	ENSGT00940000157870.a.b	ENSGT00390000014810.b	ENSGT00940000155332.B.w
River trout	MODERN SPECIES	19	zgc:101016 (ENSSTUG00000015318)	abhd17b (ENSSTUG00000015303)	cemip2 (ENSSTUG00000014993)	TRPM3 (ENSSTUG00000013076)	klf9 (ENSSTUG00000013016)	fam219ab (ENSSTUG00000012949)	ENSSTUG00000012938	bco2l (ENSSTUG00000011925)	ENSSTUG00000011890	LZTS1 (ENSSTUG00000011885)	ENSSTUG00000011881	PDE4D (ENSSTUG00000009874)	ENSSTUG00000009825	ENSSTUG00000009811	ENSSTUG00000009654	smad2 (ENSSTUG00000009500) ##22	IER3IP1 (ENSSTUG00000009484)	ENSSTUG00000009377	tal2 (ENSSTUG00000009368)	ENSSTUG00000009350	zgc:152968 (ENSSTUG00000009285)	poli (ENSSTUG00000009268)	RAB27B (ENSSTUG00000009263)	ST8SIA3 (ENSSTUG00000009258)	CCNG2 (ENSSTUG00000009237)	ENSSTUG00000009176	zgc:158260 (ENSSTUG00000009165)	scarb2a (ENSSTUG00000009094)	ENSSTUG00000009055	PPEF2 (ENSSTUG00000008988)	ENSSTUG00000008966
Atlantic salmon	MODERN SPECIES	16	tmc2b (ENSSSAG00000105965)	zfand5a (ENSSSAG00000094432)	gda (ENSSSAG00000117724)	f108b (ENSSSAG00000119914)	cemip2 (ENSSSAG00000055378)	TRPM3 (ENSSSAG00000089500)	klf9 (ENSSSAG00000093699)	fam219ab (ENSSSAG00000118215)	bco2l (ENSSSAG00000094480)	ENSSSAG00000094643	ENSSSAG00000071234	ENSSSAG00000045663	ENSSSAG00000079436	ENSSSAG00000098785	ENSSSAG00000084927	ENSSSAG00000110600 ##22	ENSSSAG00000112176	ENSSSAG00000084824	ENSSSAG00000101807	ENSSSAG00000096108	ENSSSAG00000104094	ENSSSAG00000085119	ENSSSAG00000084528	ENSSSAG00000116898	ENSSSAG00000090198	ENSSSAG00000116609	ENSSSAG00000086171	zgc:158260 (ENSSSAG00000097891)	ENSSSAG00000070583	ENSSSAG00000077070	ENSSSAG00000070512
Northern pike	MODERN SPECIES	12	abhd17b (ENSELUG00000002227)	ENSELUG00000029793	cemip2 (ENSELUG00000002217)	TRPM3 (ENSELUG00000002191)	klf9 (ENSELUG00000027665)	fam219ab (ENSELUG00000002157)	ENSELUG00000002153	ela3l (ENSELUG00000002152)	bco2l (ENSELUG00000002146)	ENSELUG00000002140	LZTS1 (ENSELUG00000024570)	ENSELUG00000027995	PDE4D (ENSELUG00000002131)	rchy1 (ENSELUG00000024548)	ENSELUG00000024507	smad2 (ENSELUG00000024497) ##22	IER3IP1 (ENSELUG00000024444)	ENSELUG00000001029	ENSELUG00000024415	lipg (ENSELUG00000024403)	KCMF1 (ENSELUG00000024398)	slc20a2 (ENSELUG00000024379)	ENSELUG00000024322	mthfd2l (ENSELUG00000024298)	ENSELUG00000023908	ENSELUG00000028495	ENSELUG00000023827	ENSELUG00000023806	ENSELUG00000023759	ENSELUG00000030596	ENSELUG00000023654
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	100										ENSGT00500000044987	ENSGT00940000155855	ENSGT00390000015494	ENSGT00940000157438.c	ENSGT00390000008853	ENSGT00940000162544.c.b	ENSGT00940000153499.b.a.k ##22	ENSGT00390000003050.b	ENSGT00390000004807	ENSGT00940000158891	ENSGT00940000154388	ENSGT00510000046985	ENSGT00390000004928	ENSGT00940000159012	ENSGT00390000014879.c.a.a.b	ENSGT00940000154966	ENSGT00940000158670	ENSGT00390000005154	ENSGT00940000160372.a	ENSGT00940000160516.g	ENSGT00390000000113.A	ENSGT00390000014879.c.b
P. kingsleyae	MODERN SPECIES	31	nipbla (ENSPKIG00000016200)	slc1a3b (ENSPKIG00000016130)	spef2 (ENSPKIG00000016017)	lifra (ENSPKIG00000015938)	ENSPKIG00000015907	RICTOR (ENSPKIG00000015844)	ENSPKIG00000015811	zgc:153352 (ENSPKIG00000015775)	ENSPKIG00000015751	ENSPKIG00000015734	IDUA (ENSPKIG00000015667)	rbp4l (ENSPKIG00000015567)	kcnv2b (ENSPKIG00000015526)	rchy1 (ENSPKIG00000015487)	ENSPKIG00000015383	smad2 (ENSPKIG00000015327) ##22	tmem267 (ENSPKIG00000015300)	ENSPKIG00000015271	ENSPKIG00000015250	sxph (ENSPKIG00000015130)	snrpg (ENSPKIG00000015072)	plpbp (ENSPKIG00000015029)	tmed4 (ENSPKIG00000014993)	slc20a1a (ENSPKIG00000014957)	snrnp200 (ENSPKIG00000014762)	ciao1 (ENSPKIG00000014682)	tmem127 (ENSPKIG00000014662)	cryba4 (ENSPKIG00000014643)	crybb1 (ENSPKIG00000014631)	ENSPKIG00000014596	slc20a2 (ENSPKIG00000014553)
Asian bonytongue	MODERN SPECIES	8	GDNF (ENSSFOG00015020253)	nipbla (ENSSFOG00015019926)	SLC1A3 (ENSSFOG00015019824)	spef2 (ENSSFOG00015019714)	lifra (ENSSFOG00015019675)	ENSSFOG00015019630	RICTOR (ENSSFOG00015019570)	ENSSFOG00015019549	ENSSFOG00015019516	ENSSFOG00015019448	IDUA (ENSSFOG00015019424)	rbp4l (ENSSFOG00015019366)	kcnv2b (ENSSFOG00015019356)	rchy1 (ENSSFOG00015027824)	ENSSFOG00015019263	smad2 (ENSSFOG00015019219) ##22	TMEM267 (ENSSFOG00015026755)	ENSSFOG00015019195	ENSSFOG00015019187	sirt4 (ENSSFOG00015019179)	sxph (ENSSFOG00015019074)	snrpg (ENSSFOG00015019030)	PROSC (ENSSFOG00015018988)	tmed4 (ENSSFOG00015018960)	slc20a1a (ENSSFOG00015018927)	snrnp200 (ENSSFOG00015018826)	ciao1 (ENSSFOG00015018807)	tmem127 (ENSSFOG00015028690)	cryba4 (ENSSFOG00015031698)	crybb1 (ENSSFOG00015018758)	ENSSFOG00015018737
Osteoglossiformes	ANCESTRAL SPECIES	53	ENSGT00940000156471.a	ENSGT00390000005102	ENSGT00670000098179.d.a	ENSGT00670000098179.d.b	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT01030000235199	ENSGT00390000006975.i	ENSGT00940000162544.c.a	ENSGT00940000178030	ENSGT00940000167241	ENSGT00940000153499.b.a.l ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000165521.a	ENSGT00390000003050.a	ENSGT00390000009872	ENSGT00940000159886	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00940000163892.C.a.b	ENSGT00940000158571
P. kingsleyae	MODERN SPECIES	9	ENSPKIG00000022185	pum3 (ENSPKIG00000022249)	KCNV2 (ENSPKIG00000022294)	vldlr (ENSPKIG00000022341)	SH3BP2 (ENSPKIG00000022417)	ENSPKIG00000022451	ENSPKIG00000022469	ENSPKIG00000022483	ENSPKIG00000022534	ENSPKIG00000022590	ENSPKIG00000022596	ENSPKIG00000022611	ENSPKIG00000022640	ENSPKIG00000022689	ENSPKIG00000022711	smad2 (ENSPKIG00000022774) ##22	skor2 (ENSPKIG00000022834)	ier3ip1 (ENSPKIG00000022861)	hdhd2 (ENSPKIG00000022879)	katnal2 (ENSPKIG00000022906)	sigmar1 (ENSPKIG00000022940)	galt (ENSPKIG00000022988)	cntfr (ENSPKIG00000023063)	ENSPKIG00000023113	ENSPKIG00000023130	si:busm1-57f23.1 (ENSPKIG00000023163)	rassf6 (ENSPKIG00000023173)	MUSK (ENSPKIG00000023201)	lpar1 (ENSPKIG00000023252)	ENSPKIG00000023258	ENSPKIG00000023272
Asian bonytongue	MODERN SPECIES	21	PDE6B (ENSSFOG00015018946)	atp5mea (ENSSFOG00015032769)	hspb9l (ENSSFOG00015018907)	ENSSFOG00015024946	ENSSFOG00015027919	ENSSFOG00015018872	pum3 (ENSSFOG00015018778)	KCNV2 (ENSSFOG00015018759)	vldlr (ENSSFOG00015018725)	ENSSFOG00015018674	spp1 (ENSSFOG00015018649)	ENSSFOG00015029427	cldn23.1 (ENSSFOG00015018631)	ENSSFOG00015018321	ENSSFOG00015026623	smad2 (ENSSFOG00015018212) ##22	skor2 (ENSSFOG00015018183)	ier3ip1 (ENSSFOG00015018167)	hdhd2 (ENSSFOG00015018148)	katnal2 (ENSSFOG00015027723)	sigmar1 (ENSSFOG00015018122)	galt (ENSSFOG00015018081)	cntfr (ENSSFOG00015018038)	ENSSFOG00015018015	tmem267 (ENSSFOG00015017982)	si:busm1-57f23.1 (ENSSFOG00015028130)	rassf6 (ENSSFOG00015017954)	MUSK (ENSSFOG00015017924)	lpar1 (ENSSFOG00015017919)	ENSSFOG00015017889	GRIN3A (ENSSFOG00015017869)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153499.a ##22
Gnathostomata	ANCESTRAL SPECIES	134	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT01100000266768	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010	ENSGT00940000170114	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22
Euteleostomi	ANCESTRAL SPECIES	56	ENSGT00940000166139	ENSGT00940000164634	ENSGT01100000266768	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00940000170114	ENSGT00950000183010.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Sarcopterygii	ANCESTRAL SPECIES	68	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00940000170114	ENSGT00950000183010.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a
Amniota	ANCESTRAL SPECIES	4	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E
Sauria	ANCESTRAL SPECIES	5	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
tuatara	DUPLICATION
tuatara	MODERN SPECIES	631												SMAD7 (ENSSPUG00000015295)	CTIF (ENSSPUG00000014734)	ENSSPUG00000014650	ZBTB7C (ENSSPUG00000014644)	ENSSPUG00000014624 ##22	HDHD2 (ENSSPUG00000014604)	KATNAL2 (ENSSPUG00000014578)	PIAS2 (ENSSPUG00000014552) ##29	ENSSPUG00000014537
tuatara	MODERN SPECIES	1783				EPB41L3 (ENSSPUG00000010118)	ZBTB14 (ENSSPUG00000010087)	ENSSPUG00000010077	AKAIN1 (ENSSPUG00000010070)	DLGAP1 (ENSSPUG00000009962)	ENSSPUG00000009921	ENSSPUG00000009914	ENSSPUG00000009881	MYOM1 (ENSSPUG00000009777)	LPIN2 (ENSSPUG00000009736)	EMILIN2 (ENSSPUG00000009472)	SMCHD1 (ENSSPUG00000009345)	ENSSPUG00000009317 ##22	NDC80 (ENSSPUG00000009282)	METTL4 (ENSSPUG00000009271)
Episquamata	ANCESTRAL SPECIES	6	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788
Toxicofera	ANCESTRAL SPECIES	18	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT01030000234969	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788
Elapidae	ANCESTRAL SPECIES	19	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850.i	ENSGT01030000234969	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788
Elapidae_a	ANCESTRAL SPECIES	24	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850.i	ENSGT01030000234969	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29
Acanthophiinae	ANCESTRAL SPECIES	24	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850.i	ENSGT01030000234969	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29
Eastern brown snake	MODERN SPECIES	2	ELAC1 (ENSPTXG00000017822)	ME2 (ENSPTXG00000017821)	MAPK4 (ENSPTXG00000017820)	ENSPTXG00000017819	ENSPTXG00000017818	ENSPTXG00000017817	MYO5B (ENSPTXG00000006873)	ACAA2 (ENSPTXG00000006871)	LIPG (ENSPTXG00000006699)	ENSPTXG00000006694	C18orf32 (ENSPTXG00000006692)	DYM (ENSPTXG00000006583)	SMAD7 (ENSPTXG00000006582)	CTIF (ENSPTXG00000006581)	ZBTB7C (ENSPTXG00000006580)	SMAD2 (ENSPTXG00000006579) ##22	SKOR2 (ENSPTXG00000006578)	IER3IP1 (ENSPTXG00000006577)	HDHD2 (ENSPTXG00000006576)	KATNAL2 (ENSPTXG00000006575)	PIAS2 (ENSPTXG00000006574) ##29	ENSPTXG00000006543
Blue-lipped sea krait	MODERN SPECIES	10267																SMAD2 (ENSLLTG00000014752) ##22
Indian cobra	MODERN SPECIES	1	ELAC1 (ENSNNAG00000013355)	ME2 (ENSNNAG00000013386)	MAPK4 (ENSNNAG00000013604)	ENSNNAG00000013618	ENSNNAG00000013628	ENSNNAG00000013638	MYO5B (ENSNNAG00000013682)	ACAA2 (ENSNNAG00000013909)	LIPG (ENSNNAG00000013974)	ENSNNAG00000014239	C18orf32 (ENSNNAG00000014266)	DYM (ENSNNAG00000014278)	SMAD7 (ENSNNAG00000014299)	CTIF (ENSNNAG00000014324)	ZBTB7C (ENSNNAG00000014457)	SMAD2 (ENSNNAG00000014472) ##22	ENSNNAG00000014533	IER3IP1 (ENSNNAG00000014563)	ENSNNAG00000014575	KATNAL2 (ENSNNAG00000014598)	PIAS2 (ENSNNAG00000014631) ##29	ENSNNAG00000014747	ST8SIA5 (ENSNNAG00000014880)	LOXHD1 (ENSNNAG00000014987)	RNF165 (ENSNNAG00000015582)	ENSNNAG00000015609	C18orf25 (ENSNNAG00000015617)	ENSNNAG00000015653	ATP5F1A (ENSNNAG00000015663)	PSTPIP2 (ENSNNAG00000015692)	ENSNNAG00000015772
Lizard	MODERN SPECIES	1							ACAA2 (ENSACAG00000017990)	LIPG (ENSACAG00000017995)	ENSACAG00000017998	C18orf32 (ENSACAG00000028947)	DYM (ENSACAG00000018002)	ENSACAG00000045249	SMAD7 (ENSACAG00000040103)	CTIF (ENSACAG00000018006)	ZBTB7C (ENSACAG00000018007)	SMAD2 (ENSACAG00000018008) ##22	GPBP1 (ENSACAG00000014605)	MIER3 (ENSACAG00000028478)	SETD9 (ENSACAG00000014688)	MAP3K1 (ENSACAG00000014703)	ANKRD55 (ENSACAG00000014766)	IL6ST (ENSACAG00000014810)	IL31RA (ENSACAG00000014938)	DDX4 (ENSACAG00000014951)	SLC38A9 (ENSACAG00000015025)	PLPP1 (ENSACAG00000015109)	MTREX (ENSACAG00000015200)	DHX29 (ENSACAG00000015328)	CCNO (ENSACAG00000015399)	MCIDAS (ENSACAG00000015405)	CDC20B (ENSACAG00000015417)
Laterata	ANCESTRAL SPECIES	8	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Argentine black and white tegu	MODERN SPECIES	34	ME2 (ENSSMRG00000016542)	MAPK4 (ENSSMRG00000016550)	ENSSMRG00000016552	ENSSMRG00000016555	ENSSMRG00000016557	MYO5B (ENSSMRG00000016569)	ACAA2 (ENSSMRG00000016578)	LIPG (ENSSMRG00000016580)	RPL17 (ENSSMRG00000016581)	C18orf32 (ENSSMRG00000016584)	DYM (ENSSMRG00000016587)	SMAD7 (ENSSMRG00000016590)	CTIF (ENSSMRG00000016591)	ENSSMRG00000016592	ZBTB7C (ENSSMRG00000016594)	SMAD2 (ENSSMRG00000016595) ##22	SKOR2 (ENSSMRG00000000124)	IER3IP1 (ENSSMRG00000000137)	HDHD2 (ENSSMRG00000000191)	KATNAL2 (ENSSMRG00000000219)	PIAS2 (ENSSMRG00000000256) ##29	ENSSMRG00000000298	ST8SIA5 (ENSSMRG00000000377)	LOXHD1 (ENSSMRG00000000443)	RNF165 (ENSSMRG00000000637)	C18orf25 (ENSSMRG00000000659)	HAUS1 (ENSSMRG00000000673)	ATP5F1A (ENSSMRG00000000705)	PSTPIP2 (ENSSMRG00000000716)	EPG5 (ENSSMRG00000000761)	ENSSMRG00000000808
Common wall lizard	MODERN SPECIES	2	MAPK4 (ENSPMRG00000010141)	ENSPMRG00000010136	ENSPMRG00000010134	ENSPMRG00000010128	ENSPMRG00000010121	MYO5B (ENSPMRG00000009756)	ACAA2 (ENSPMRG00000009605)	LIPG (ENSPMRG00000009592)	ENSPMRG00000009575	C18orf32 (ENSPMRG00000009571)	DYM (ENSPMRG00000009531)	SMAD7 (ENSPMRG00000009512)	CTIF (ENSPMRG00000009496)	ZBTB7C (ENSPMRG00000009478)	ENSPMRG00000009469	SMAD2 (ENSPMRG00000009455) ##22	SKOR2 (ENSPMRG00000009448)	HDHD2 (ENSPMRG00000009442)	KATNAL2 (ENSPMRG00000015210)	PIAS2 (ENSPMRG00000015190) ##29	ENSPMRG00000015174	ST8SIA5 (ENSPMRG00000015167)	LOXHD1 (ENSPMRG00000015049)	RNF165 (ENSPMRG00000015013)	ENSPMRG00000015011	C18orf25 (ENSPMRG00000015004)	ENSPMRG00000015002	ATP5F1A (ENSPMRG00000014993)	PSTPIP2 (ENSPMRG00000014981)	EPG5 (ENSPMRG00000014633)	ENSPMRG00000014575
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Archosauria	ANCESTRAL SPECIES	1	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Aves	ANCESTRAL SPECIES	4	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Neognathae	DUPLICATION
Neognathae	ANCESTRAL SPECIES	245																ENSGT00940000153499.a.c ##22	ENSGT01030000236530
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000153499.a.c ##22
Anatidae	ANCESTRAL SPECIES	55	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT01030000234969	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.c ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Duck	MODERN SPECIES	4281	ME2 (ENSAPLG00000004164)	MAPK4 (ENSAPLG00000004651)	ENSAPLG00000004736	ENSAPLG00000004971	ENSAPLG00000005297	MYO5B (ENSAPLG00000005427)	ACAA2 (ENSAPLG00000006058)	LIPG (ENSAPLG00000008809)	ENSAPLG00000008451	C18orf32 (ENSAPLG00000017090)	DYM (ENSAPLG00000007759)	ENSAPLG00000022343	SMAD7 (ENSAPLG00000001268)	CTIF (ENSAPLG00000014486)	ZBTB7C (ENSAPLG00000016660)	SMAD2 (ENSAPLG00000004964) ##22	SKOR2 (ENSAPLG00000022487)	IER3IP1 (ENSAPLG00000018295)	HDHD2 (ENSAPLG00000004974)	KATNAL2 (ENSAPLG00000005005)	PIAS2 (ENSAPLG00000005190) ##29	ENSAPLG00000022068	ST8SIA5 (ENSAPLG00000011069)	LOXHD1 (ENSAPLG00000010718)	ENSAPLG00000018736	RNF165 (ENSAPLG00000006619)	C18orf25 (ENSAPLG00000017723)	HAUS1 (ENSAPLG00000011232)	ATP5F1A (ENSAPLG00000011512)	PSTPIP2 (ENSAPLG00000011930)	EPG5 (ENSAPLG00000011964)
Pink-footed goose	MODERN SPECIES	326														ZBTB7C (ENSABRG00000011627)	ENSABRG00000011637 #22	SMAD2 (ENSABRG00000011646) ##22	IER3IP1 (ENSABRG00000011660)	HDHD2 (ENSABRG00000011673)
Neognathae_b	ANCESTRAL SPECIES	200																ENSGT00940000153499.a.c ##22	ENSGT01030000236530
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000153499.a.c ##22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000153499.a.c ##22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000153499.a.c ##22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000153499.a.c ##22
Common canary	MODERN SPECIES	137															ENSSCAG00000015845	ENSSCAG00000015838 ##22
Medium ground finch	MODERN SPECIES	410																ENSGFOG00000006182 ##22
Neognathae_c	ANCESTRAL SPECIES	102															ENSGT00940000159814.a	ENSGT00940000153499.a.c ##22	ENSGT01030000236530
Golden eagle	MODERN SPECIES	91	ENSACCG00020009582	ME2 (ENSACCG00020009563)	MAPK4 (ENSACCG00020009547)	ENSACCG00020009534	ENSACCG00020009516	ENSACCG00020009495	MYO5B (ENSACCG00020016656)	ACAA2 (ENSACCG00020016573)	LIPG (ENSACCG00020016557)	RPL17 (ENSACCG00020016537)	C18orf32 (ENSACCG00020016535)	DYM (ENSACCG00020016531)	SMAD7 (ENSACCG00020016530)	CTIF (ENSACCG00020016528)	ZBTB7C (ENSACCG00020016526)	SMAD2 (ENSACCG00020016518) ##22	SKOR2 (ENSACCG00020016513)	IER3IP1 (ENSACCG00020016510)	HDHD2 (ENSACCG00020016506)	KATNAL2 (ENSACCG00020016503)	PIAS2 (ENSACCG00020016500) ##29	ENSACCG00020016495	ST8SIA5 (ENSACCG00020016492)	LOXHD1 (ENSACCG00020016482)	RNF165 (ENSACCG00020016454)	ENSACCG00020016448	C18orf25 (ENSACCG00020016442)	HAUS1 (ENSACCG00020016407)	ATP5F1A (ENSACCG00020016399)	PSTPIP2 (ENSACCG00020016388)	EPG5 (ENSACCG00020016353)
Kakapo	MODERN SPECIES	4	ENSSHBG00005001061	ENSSHBG00005001062	ENSSHBG00005001063	ENSSHBG00005001064	ENSSHBG00005001065	ENSSHBG00005001066	ENSSHBG00005001067	ENSSHBG00005001070	ENSSHBG00005001075	ENSSHBG00005001076	ENSSHBG00005001078	ENSSHBG00005001079	ENSSHBG00005001080	ENSSHBG00005001081	ENSSHBG00005001082	ENSSHBG00005001084 ##22	ENSSHBG00005001085	ENSSHBG00005001087	ENSSHBG00005001088	ENSSHBG00005001089	ENSSHBG00005001090	ENSSHBG00005001092	ENSSHBG00005001094	ENSSHBG00005001095	ENSSHBG00005001096	ENSSHBG00005009606	ENSSHBG00005009625	ENSSHBG00005009703	ENSSHBG00005009914	ENSSHBG00005009925	ENSSHBG00005009934
Neognathae	ANCESTRAL SPECIES	12	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.c.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.c.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00940000159146	ENSGT00940000157435	ENSGT00950000183134.c.b.v	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.c.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00730000111224	ENSGT00950000183134.c.b.v	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.c.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Passeroidea	ANCESTRAL SPECIES	27	ENSGT00940000157435	ENSGT00950000183134.c.b.v	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.c.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Zebra finch	MODERN SPECIES	104	ENSTGUG00000015982	RPL17 (ENSTGUG00000000044)	LIPG (ENSTGUG00000000061)	ACAA2 (ENSTGUG00000000058)	MYO5B (ENSTGUG00000000053)	ENSTGUG00000018125	ENSTGUG00000000072	ENSTGUG00000000071	ENSTGUG00000028962	RPL17 (ENSTGUG00000028072)	ENSTGUG00000000043	DYM (ENSTGUG00000000035)	SMAD7 (ENSTGUG00000000034)	CTIF (ENSTGUG00000000030)	ZBTB7C (ENSTGUG00000000028)	SMAD2 (ENSTGUG00000000016) ##22	ENSTGUG00000014263	IER3IP1 (ENSTGUG00000028694)	HDHD2 (ENSTGUG00000028684)	KATNAL2 (ENSTGUG00000000013)	PIAS2 (ENSTGUG00000000006) ##29
Common canary	MODERN SPECIES	32				ENSSCAG00000014403	ENSSCAG00000014408	ENSSCAG00000014412	MYO5B (ENSSCAG00000015157)	ACAA2 (ENSSCAG00000016211)	LIPG (ENSSCAG00000016215)	ENSSCAG00000016220	ENSSCAG00000016226	DYM (ENSSCAG00000016230)	SMAD7 (ENSSCAG00000016234)	ENSSCAG00000016237	ZBTB7C (ENSSCAG00000016243)	ENSSCAG00000016249 ##22	IER3IP1 (ENSSCAG00000016254)	HDHD2 (ENSSCAG00000016258)	KATNAL2 (ENSSCAG00000016261)	ENSSCAG00000016263 ##29	ST8SIA5 (ENSSCAG00000016270)	LOXHD1 (ENSSCAG00000016279)	RNF165 (ENSSCAG00000016296)	ENSSCAG00000016301	HAUS1 (ENSSCAG00000016303)	ENSSCAG00000016307	PSTPIP2 (ENSSCAG00000016312)	EPG5 (ENSSCAG00000016319)	ENSSCAG00000016324	ENSSCAG00000016329	ENSSCAG00000016338
Medium ground finch	MODERN SPECIES	68		ELAC1 (ENSGFOG00000013181)	ME2 (ENSGFOG00000013178)	ENSGFOG00000013172	ENSGFOG00000013168	ENSGFOG00000013164	MYO5B (ENSGFOG00000013103)	ACAA2 (ENSGFOG00000013087)	LIPG (ENSGFOG00000013083)	ENSGFOG00000013078	ENSGFOG00000013074	DYM (ENSGFOG00000013055)	SMAD7 (ENSGFOG00000013050)	CTIF (ENSGFOG00000013039)	ZBTB7C (ENSGFOG00000013033)	ENSGFOG00000013025 ##22	IER3IP1 (ENSGFOG00000013022)	HDHD2 (ENSGFOG00000013020)	KATNAL2 (ENSGFOG00000013015)	ENSGFOG00000013009 ##29	ST8SIA5 (ENSGFOG00000013005)	LOXHD1 (ENSGFOG00000012988)	RNF165 (ENSGFOG00000012981)	ENSGFOG00000012977	ENSGFOG00000012973	HAUS1 (ENSGFOG00000012970)	ENSGFOG00000012961	PSTPIP2 (ENSGFOG00000012952)	EPG5 (ENSGFOG00000012823)	ENSGFOG00000012800	ENSGFOG00000012786
Flycatcher	MODERN SPECIES	561			ENSFALG00000024246	ENSFALG00000002576	ENSFALG00000009012	MYO5B (ENSFALG00000008996)	ACAA2 (ENSFALG00000008979)	LIPG (ENSFALG00000008973)	ENSFALG00000008965	C18orf32 (ENSFALG00000008961)	DYM (ENSFALG00000008953)	SMAD7 (ENSFALG00000008945)	CTIF (ENSFALG00000024197)	ENSFALG00000028976	ZBTB7C (ENSFALG00000008940)	SMAD2 (ENSFALG00000008934) ##22	IER3IP1 (ENSFALG00000026006)	HDHD2 (ENSFALG00000008930)	KATNAL2 (ENSFALG00000008928)	PIAS2 (ENSFALG00000008918) ##29	ST8SIA5 (ENSFALG00000008899)	LOXHD1 (ENSFALG00000008897)	RNF165 (ENSFALG00000023345)	C18orf25 (ENSFALG00000008886)	HAUS1 (ENSFALG00000008884)	ATP5F1A (ENSFALG00000008875)	EPG5 (ENSFALG00000008862)	ENSFALG00000008861	ENSFALG00000024024	ENSFALG00000008859	SETBP1 (ENSFALG00000008857)
Great tit	MODERN SPECIES	642	ELAC1 (ENSPMJG00000002077)	ME2 (ENSPMJG00000002100)	MAPK4 (ENSPMJG00000002569)	ENSPMJG00000002575	ENSPMJG00000002577	ENSPMJG00000002582	MYO5B (ENSPMJG00000002662)	ACAA2 (ENSPMJG00000002693)	LIPG (ENSPMJG00000002703)	ENSPMJG00000002708	C18orf32 (ENSPMJG00000002712)	DYM (ENSPMJG00000002819)	SMAD7 (ENSPMJG00000002909)	CTIF (ENSPMJG00000002914)	ZBTB7C (ENSPMJG00000002973)	SMAD2 (ENSPMJG00000002989) ##22	SKOR2 (ENSPMJG00000003106)	IER3IP1 (ENSPMJG00000003108)	HDHD2 (ENSPMJG00000003109)	KATNAL2 (ENSPMJG00000003284)	PIAS2 (ENSPMJG00000003313) ##29	ST8SIA5 (ENSPMJG00000003351)	ENSPMJG00000003355	LOXHD1 (ENSPMJG00000003381)	RNF165 (ENSPMJG00000003419)	C18orf25 (ENSPMJG00000003436)	HAUS1 (ENSPMJG00000003444)	ATP5F1A (ENSPMJG00000003455)	PSTPIP2 (ENSPMJG00000004774)	EPG5 (ENSPMJG00000004806)	ENSPMJG00000004850
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b.g	ENSGT00940000159814.b	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.d	ENSGT00390000006029	ENSGT00550000074846.db	ENSGT00390000016167.c.b	ENSGT00940000167769	ENSGT00940000158788	ENSGT00390000007354
Kakapo	MODERN SPECIES	19	ENSSHBG00005011666	ELAC1 (ENSSHBG00005011655)	ME2 (ENSSHBG00005011635)	MAPK4 (ENSSHBG00005011621)	ENSSHBG00005011601	ENSSHBG00005011586	MYO5B (ENSSHBG00005011309)	ACAA2 (ENSSHBG00005011224)	LIPG (ENSSHBG00005011192)	ENSSHBG00005011099	C18orf32 (ENSSHBG00005011080)	DYM (ENSSHBG00005011046)	SMAD7 (ENSSHBG00005011025)	ENSSHBG00005011002	ZBTB7C (ENSSHBG00005010973)	ENSSHBG00005010919 ##22	ENSSHBG00005010880	IER3IP1 (ENSSHBG00005010867)	HDHD2 (ENSSHBG00005010840)	KATNAL2 (ENSSHBG00005010077)	ENSSHBG00005009962 ##29	ENSSHBG00005009938	ST8SIA5 (ENSSHBG00005009922)	LOXHD1 (ENSSHBG00005008933)	RNF165 (ENSSHBG00005008844)	ENSSHBG00005008835	ENSSHBG00005008832	ENSSHBG00005008822	PSTPIP2 (ENSSHBG00005008805)	ENSSHBG00005008791	EPG5 (ENSSHBG00005008678)
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Phasianidae	DUPLICATION
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000153499.a.d.a.a ##22
Japanese quail	MODERN SPECIES	699	MALT1 (ENSCJPG00005004888)	ZNF532 (ENSCJPG00005004899)	SEC11C (ENSCJPG00005004904)	GRP (ENSCJPG00005004907)	RAX (ENSCJPG00005004909)	CPLX4 (ENSCJPG00005004910)	LMAN1 (ENSCJPG00005004911)	ACAA2 (ENSCJPG00005004912)	LIPG (ENSCJPG00005004913)	ENSCJPG00005004917	C18orf32 (ENSCJPG00005004922)	DYM (ENSCJPG00005004924)	SMAD7 (ENSCJPG00005004928)	CTIF (ENSCJPG00005004929)	ZBTB7C (ENSCJPG00005004933)	SMAD2 (ENSCJPG00005004935) ##22	SKOR2 (ENSCJPG00005004937)	IER3IP1 (ENSCJPG00005004943)	HDHD2 (ENSCJPG00005004947)	KATNAL2 (ENSCJPG00005004948)	PIAS2 (ENSCJPG00005004954) ##29	ST8SIA5 (ENSCJPG00005005152)	LOXHD1 (ENSCJPG00005005160)	RNF165 (ENSCJPG00005005197)	C18orf25 (ENSCJPG00005005205)	HAUS1 (ENSCJPG00005005206)	ATP5F1A (ENSCJPG00005005208)	PSTPIP2 (ENSCJPG00005005209)	EPG5 (ENSCJPG00005005256)	ENSCJPG00005005293	ENSCJPG00005005294
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000153499.a.d.a.a ##22
Chicken	MODERN SPECIES	130	ENSGALG00010012721	ENSGALG00010012733	ENSGALG00010012737	ENSGALG00010012741	ENSGALG00010012748	SPIN1L (ENSGALG00010012781)	ENSGALG00010012804	ENSGALG00010012827	ENSGALG00010012836	ENSGALG00010012843	ENSGALG00010012860	ENSGALG00010012884	ENSGALG00010012888	ENSGALG00010012897	ENSGALG00010012906	ENSGALG00010012927 ##22	ENSGALG00010012972	ENSGALG00010013079	ENSGALG00010013134	ENSGALG00010013143	ENSGALG00010013148	ENSGALG00010013154	ENSGALG00010013185	ENSGALG00010013202	ENSGALG00010013208	ENSGALG00010013058	ENSGALG00010013069	ENSGALG00010013248	ENSGALG00010013319	ENSGALG00010013341	ENSGALG00010013347
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00390000018044.b.a	ENSGT00940000154437.ad.b	ENSGT00390000015600.c.b	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.k	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d.a.b ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00390000018044.b.a	ENSGT00940000154437.ad.b	ENSGT00390000015600.c.b	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.k	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d.a.b ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.a	ENSGT00390000006029	ENSGT00550000074846.eb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.d
Chicken	MODERN SPECIES	131	PCASP1 (ENSGALG00010010352)	ENSGALG00010010368	SEC11C (ENSGALG00010010382)	GRP (ENSGALG00010010395)	RAX (ENSGALG00010010409)	CPLX4 (ENSGALG00010010415)	LMAN1L (ENSGALG00010010445)	ACAA2 (ENSGALG00010010463)	LIPG (ENSGALG00010009013)	RPL17 (ENSGALG00010011192)	ENSGALG00010011203	DYM (ENSGALG00010010922)	SMAD7 (ENSGALG00010009910)	CTIF (ENSGALG00010010007)	ZBTB7C (ENSGALG00010010049)	SMAD2 (ENSGALG00010010623) ##22	SKOR2 (ENSGALG00010011268)	IER3IP1 (ENSGALG00010011367)	HDHD2 (ENSGALG00010012845)	KATNAL2 (ENSGALG00010011422)	PIAS2 (ENSGALG00010009774) ##29	ST8SIA5 (ENSGALG00010009858)	LOXHD1 (ENSGALG00010012046)	RNF165 (ENSGALG00010012051)	CZH18ORF25 (ENSGALG00010012067)	HAUS1 (ENSGALG00010012082)	ATP5F1AZ (ENSGALG00010012088)	PSTPIP2 (ENSGALG00010012108)	EPG5 (ENSGALG00010012119)	ENSGALG00010012126	ENSGALG00010012131
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000153499.a.d.b ##22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000153499.a.d.b ##22
Turkey	MODERN SPECIES	1299	ENSMGAG00000018982	ENSMGAG00000019892	ENSMGAG00000003266	ENSMGAG00000001102	ENSMGAG00000001140	NEDD4L (ENSMGAG00000000935)	ENSMGAG00000021263	ALPK2 (ENSMGAG00000018725)	ENSMGAG00000001342	MALT1 (ENSMGAG00000001082)	ENSMGAG00000001162	SEC11C (ENSMGAG00000001165)	ENSMGAG00000022342	CTIF (ENSMGAG00000021290)	ZBTB7C (ENSMGAG00000001366)	SMAD2 (ENSMGAG00000001351) ##22	IER3IP1 (ENSMGAG00000020998)	HDHD2 (ENSMGAG00000004803)	KATNAL2 (ENSMGAG00000004476)	ENSMGAG00000001384 ##29	ST8SIA5 (ENSMGAG00000016483)	LOXHD1 (ENSMGAG00000016776)	RNF165 (ENSMGAG00000001405)	C18orf25 (ENSMGAG00000021854)	HAUS1 (ENSMGAG00000001559)	ENSMGAG00000009963	PSTPIP2 (ENSMGAG00000001515)	EPG5 (ENSMGAG00000001532)	ENSMGAG00000001401	ENSMGAG00000009233	ENSMGAG00000009227
African ostrich	MODERN SPECIES	306	ME2 (ENSSCUG00000001529)	MAPK4 (ENSSCUG00000001532)	ENSSCUG00000001533	ENSSCUG00000001536	ENSSCUG00000001539	MYO5B (ENSSCUG00000001541)	ACAA2 (ENSSCUG00000001545)	LIPG (ENSSCUG00000001552)	ENSSCUG00000001555	C18orf32 (ENSSCUG00000001562)	DYM (ENSSCUG00000001566)	ENSSCUG00000001573	SMAD7 (ENSSCUG00000001575)	CTIF (ENSSCUG00000001577)	ZBTB7C (ENSSCUG00000001580)	SMAD2 (ENSSCUG00000001582) ##22	IER3IP1 (ENSSCUG00000001587)	HDHD2 (ENSSCUG00000001588)	KATNAL2 (ENSSCUG00000001589)	PIAS2 (ENSSCUG00000001592) ##29	ENSSCUG00000001625	ST8SIA5 (ENSSCUG00000001666)	LOXHD1 (ENSSCUG00000001676)	RNF165 (ENSSCUG00000001684)	C18orf25 (ENSSCUG00000001690)	HAUS1 (ENSSCUG00000001700)	ATP5F1A (ENSSCUG00000001706)	PSTPIP2 (ENSSCUG00000001712)	EPG5 (ENSSCUG00000001722)	ENSSCUG00000001740	ENSSCUG00000001742
Australian saltwater crocodile	MODERN SPECIES	29	CCDC68 (ENSCPRG00005014153)	RAB27B (ENSCPRG00005014155)	ELAC1 (ENSCPRG00005014160)	ME2 (ENSCPRG00005014168)	ENSCPRG00005014216	ENSCPRG00005014610	ENSCPRG00005014614	ACAA2 (ENSCPRG00005014619)	LIPG (ENSCPRG00005014622)	ENSCPRG00005014628	C18orf32 (ENSCPRG00005014637)	DYM (ENSCPRG00005014651)	SMAD7 (ENSCPRG00005014735)	CTIF (ENSCPRG00005014748)	ZBTB7C (ENSCPRG00005014760)	SMAD2 (ENSCPRG00005014766) ##22	IER3IP1 (ENSCPRG00005014776)	HDHD2 (ENSCPRG00005014780)	KATNAL2 (ENSCPRG00005014784)	PIAS2 (ENSCPRG00005014791) ##29	ENSCPRG00005014797	ENSCPRG00005014800	ST8SIA5 (ENSCPRG00005014802)	LOXHD1 (ENSCPRG00005014818)	RNF165 (ENSCPRG00005014878)	C18orf25 (ENSCPRG00005014887)	HAUS1 (ENSCPRG00005014890)	ATP5F1A (ENSCPRG00005014898)	PSTPIP2 (ENSCPRG00005014911)	EPG5 (ENSCPRG00005014928)	ENSCPRG00005014943
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.n	ENSGT00390000018729.a.d
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.n	ENSGT00390000018729.a.d
Emydidae	ANCESTRAL SPECIES	7	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.n	ENSGT00390000018729.a.d
Three-toed box turtle	MODERN SPECIES	29	MAPK4 (ENSTMTG00000001722)	ENSTMTG00000001717	ENSTMTG00000001712	ENSTMTG00000001700	ENSTMTG00000001691	MYO5B (ENSTMTG00000001656)	ACAA2 (ENSTMTG00000001632)	LIPG (ENSTMTG00000001568)	ENSTMTG00000001521	C18orf32 (ENSTMTG00000001516)	DYM (ENSTMTG00000001505)	ENSTMTG00000001494	SMAD7 (ENSTMTG00000001490)	CTIF (ENSTMTG00000001480)	ZBTB7C (ENSTMTG00000001470)	SMAD2 (ENSTMTG00000001451) ##22	SKOR2 (ENSTMTG00000001437)	IER3IP1 (ENSTMTG00000001428)	HDHD2 (ENSTMTG00000001421)	KATNAL2 (ENSTMTG00000001412)	PIAS2 (ENSTMTG00000001368) ##29	ENSTMTG00000001347	ST8SIA5 (ENSTMTG00000001323)	LOXHD1 (ENSTMTG00000001168)	RNF165 (ENSTMTG00000001099)	ENSTMTG00000001086	C18orf25 (ENSTMTG00000001078)	ENSTMTG00000001068	HAUS1 (ENSTMTG00000001059)	ATP5F1A (ENSTMTG00000001043)	PSTPIP2 (ENSTMTG00000001028)
painted turtle	MODERN SPECIES	15	ELAC1 (ENSCPBG00000025613)	ME2 (ENSCPBG00000025614)	MAPK4 (ENSCPBG00000025615)	ENSCPBG00000025618	ENSCPBG00000025620	ENSCPBG00000025621	MYO5B (ENSCPBG00000025623)	ACAA2 (ENSCPBG00000025630)	LIPG (ENSCPBG00000025633)	ENSCPBG00000025638	C18orf32 (ENSCPBG00000025643)	DYM (ENSCPBG00000025646)	SMAD7 (ENSCPBG00000025649)	CTIF (ENSCPBG00000025654)	ZBTB7C (ENSCPBG00000025669)	SMAD2 (ENSCPBG00000025672) ##22	SKOR2 (ENSCPBG00000025680)	IER3IP1 (ENSCPBG00000025681)	HDHD2 (ENSCPBG00000025683)	KATNAL2 (ENSCPBG00000025685)	PIAS2 (ENSCPBG00000025688) ##29	ENSCPBG00000025689	ST8SIA5 (ENSCPBG00000025690)	LOXHD1 (ENSCPBG00000025693)	RNF165 (ENSCPBG00000025704)	C18orf25 (ENSCPBG00000025709)	HAUS1 (ENSCPBG00000025713)	ATP5F1A (ENSCPBG00000025716)	PSTPIP2 (ENSCPBG00000025723)	EPG5 (ENSCPBG00000025732)	ENSCPBG00000025735
Testudinidae	ANCESTRAL SPECIES	30	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT01030000234969	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.n	ENSGT00390000018729.a.d
Abingdon island giant tortoise	MODERN SPECIES	2042															ZBTB7C (ENSCABG00000020683)	SMAD2 (ENSCABG00000020680) ##22	IER3IP1 (ENSCABG00000020676)	HDHD2 (ENSCABG00000020673)	KATNAL2 (ENSCABG00000020670)	PIAS2 (ENSCABG00000020669) ##29	ENSCABG00000020668	ST8SIA5 (ENSCABG00000020667)
Goode s thornscrub tortoise	MODERN SPECIES	20	MAPK4 (ENSGEVG00005019610)	ENSGEVG00005019617	ENSGEVG00005019631	ENSGEVG00005019638	MYO5B (ENSGEVG00005019665)	ACAA2 (ENSGEVG00005019715)	LIPG (ENSGEVG00005019740)	ENSGEVG00005019793	C18orf32 (ENSGEVG00005019829)	DYM (ENSGEVG00005019836)	SMAD7 (ENSGEVG00005019841)	CTIF (ENSGEVG00005019849)	ENSGEVG00005019871	ZBTB7C (ENSGEVG00005019877)	ENSGEVG00005019880	SMAD2 (ENSGEVG00005019888) ##22	SKOR2 (ENSGEVG00005019904)	IER3IP1 (ENSGEVG00005019910)	HDHD2 (ENSGEVG00005019914)	KATNAL2 (ENSGEVG00005019929)	PIAS2 (ENSGEVG00005019940) ##29	ENSGEVG00005019963	ST8SIA5 (ENSGEVG00005020035)	LOXHD1 (ENSGEVG00005020075)	ENSGEVG00005020105	C18orf25 (ENSGEVG00005020108)	HAUS1 (ENSGEVG00005020111)	ENSGEVG00005020123	ATP5F1A (ENSGEVG00005020124)	PSTPIP2 (ENSGEVG00005020128)	EPG5 (ENSGEVG00005020148)
Chinese turtle	MODERN SPECIES	2138	ENSPSIG00000016894	ENSPSIG00000017234	ENSPSIG00000017286	MYO5B (ENSPSIG00000005153)	ACAA2 (ENSPSIG00000005335)	LIPG (ENSPSIG00000005431)	ENSPSIG00000005516	C18orf32 (ENSPSIG00000005560)	DYM (ENSPSIG00000005625)	SMAD7 (ENSPSIG00000006254)	CTIF (ENSPSIG00000006508)	ENSPSIG00000006516	ENSPSIG00000006540	ENSPSIG00000000589	ZBTB7C (ENSPSIG00000006571)	SMAD2 (ENSPSIG00000006646) ##22	HDHD2 (ENSPSIG00000007538)	KATNAL2 (ENSPSIG00000007746)	PIAS2 (ENSPSIG00000007898) ##29	ST8SIA5 (ENSPSIG00000007901)	ENSPSIG00000008936	RNF165 (ENSPSIG00000008948)	C18orf25 (ENSPSIG00000009048)	HAUS1 (ENSPSIG00000009054)	ATP5F1A (ENSPSIG00000009091)	PSTPIP2 (ENSPSIG00000009919)	EPG5 (ENSPSIG00000010110)	ENSPSIG00000011149	ENSPSIG00000011549	ENSPSIG00000012220	SETBP1 (ENSPSIG00000012250)
Mammalia	ANCESTRAL SPECIES	10	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E
Theria	ANCESTRAL SPECIES	11	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT01030000234969	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.e	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.a
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.e	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.a
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.b	ENSGT00950000183010.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.e	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.a
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.e	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E	ENSGT00390000018729.a.a
koala	MODERN SPECIES	22									LIPG (ENSPCIG00000028229)	ENSPCIG00000028230	C18orf32 (ENSPCIG00000032291)	DYM (ENSPCIG00000031532)	SMAD7 (ENSPCIG00000019168)	CTIF (ENSPCIG00000026247)	ZBTB7C (ENSPCIG00000015685)	SMAD2 (ENSPCIG00000015690) ##22	SKOR2 (ENSPCIG00000006700)	IER3IP1 (ENSPCIG00000033187)	HDHD2 (ENSPCIG00000006706)	KATNAL2 (ENSPCIG00000006712)	PIAS2 (ENSPCIG00000006717) ##29	ENSPCIG00000006722	ENSPCIG00000006735	RNF165 (ENSPCIG00000006802)	C18orf25 (ENSPCIG00000006809)	HAUS1 (ENSPCIG00000006819)	ENSPCIG00000006824	ENSPCIG00000006831	PSTPIP2 (ENSPCIG00000026564)	EPG5 (ENSPCIG00000019029)	ENSPCIG00000019325
Common wonbat	MODERN SPECIES	1028	ELAC1 (ENSVURG00010001144)	ME2 (ENSVURG00010001127)	MRO (ENSVURG00010001023)	MAPK4 (ENSVURG00010001000)	ENSVURG00010000853	ENSVURG00010000841	ENSVURG00010000828	MYO5B (ENSVURG00010000687)	ACAA2 (ENSVURG00010000570)	LIPG (ENSVURG00010000510)	C18orf32 (ENSVURG00010000458)	DYM (ENSVURG00010000407)	SMAD7 (ENSVURG00010000339)	CTIF (ENSVURG00010000308)	ZBTB7C (ENSVURG00010000266)	SMAD2 (ENSVURG00010000218) ##22	SKOR2 (ENSVURG00010000155)	IER3IP1 (ENSVURG00010000126)	HDHD2 (ENSVURG00010000102)	KATNAL2 (ENSVURG00010022300)	PIAS2 (ENSVURG00010022283) ##29	ST8SIA5 (ENSVURG00010022274)	ENSVURG00010022268	ENSVURG00010022265	RNF165 (ENSVURG00010022261)	C18orf25 (ENSVURG00010022255)	HAUS1 (ENSVURG00010022251)	ENSVURG00010022245	PSTPIP2 (ENSVURG00010022237)	EPG5 (ENSVURG00010022212)	ENSVURG00010022201
Wallaby	MODERN SPECIES	8379																SMAD2 (ENSMEUG00000008831) ##22
Tasmanian devil	MODERN SPECIES		ME2 (ENSSHAG00000014027)	ENSSHAG00000008004	ENSSHAG00000013029	ENSSHAG00000010788	ENSSHAG00000026350	ENSSHAG00000010062	ENSSHAG00000003364	ACAA2 (ENSSHAG00000001241)	LIPG (ENSSHAG00000004911)	ENSSHAG00000003060	ENSSHAG00000030929	DYM (ENSSHAG00000001181)	SMAD7 (ENSSHAG00000017444)	CTIF (ENSSHAG00000027815)	ZBTB7C (ENSSHAG00000024277)	SMAD2 (ENSSHAG00000012837) ##22	ENSSHAG00000012107	SKOR2 (ENSSHAG00000025447)	HDHD2 (ENSSHAG00000024217)	KATNAL2 (ENSSHAG00000003042)	PIAS2 (ENSSHAG00000005954) ##29	ST8SIA5 (ENSSHAG00000021657)	ENSSHAG00000017868	RNF165 (ENSSHAG00000017805)	C18orf25 (ENSSHAG00000017414)	HAUS1 (ENSSHAG00000030289)	ENSSHAG00000017177	PSTPIP2 (ENSSHAG00000017036)	EPG5 (ENSSHAG00000016721)	ENSSHAG00000016659	SLC14A1 (ENSSHAG00000032087)
Opossum	MODERN SPECIES	2	ENSMODG00000003773	ENSMODG00000043831	MYO5B (ENSMODG00000003753)	ACAA2 (ENSMODG00000003595)	ENSMODG00000039010	LIPG (ENSMODG00000003564)	ENSMODG00000003534	C18orf32 (ENSMODG00000003518)	ENSMODG00000050373	DYM (ENSMODG00000003506)	SMAD7 (ENSMODG00000039523)	CTIF (ENSMODG00000003464)	ENSMODG00000046916	ZBTB7C (ENSMODG00000003412)	ENSMODG00000042470	SMAD2 (ENSMODG00000003393) ##22	SKOR2 (ENSMODG00000003381)	IER3IP1 (ENSMODG00000037588)	HDHD2 (ENSMODG00000044379)	KATNAL2 (ENSMODG00000003358)	ENSMODG00000003324 ##29	ENSMODG00000048012	ST8SIA5 (ENSMODG00000003305)	LOXHD1 (ENSMODG00000003285)	RNF165 (ENSMODG00000003260)	ENSMODG00000043074	C18orf25 (ENSMODG00000003250)	HAUS1 (ENSMODG00000003208)	ATP5F1A (ENSMODG00000003241)	PSTPIP2 (ENSMODG00000003193)	ENSMODG00000025419
Eutheria	ANCESTRAL SPECIES	20	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000153499.a ##22
Armadillo	MODERN SPECIES	2302	BAIAP2L2 (ENSDNOG00000024549)	ENSDNOG00000049001	PICK1 (ENSDNOG00000044540)	SOX10 (ENSDNOG00000044459)	POLR2F (ENSDNOG00000005884)	C22orf23 (ENSDNOG00000042358)	MICALL1 (ENSDNOG00000008467)	EIF3L (ENSDNOG00000047382)	ENSDNOG00000034176	ENSDNOG00000015624	SMAD7 (ENSDNOG00000047206)	CTIF (ENSDNOG00000037310)	ZBTB7C (ENSDNOG00000045505)	ENSDNOG00000037675	ENSDNOG00000045395	SMAD2 (ENSDNOG00000009315) ##22
Sloth	MODERN SPECIES	6240																SMAD2 (ENSCHOG00000011289) ##22
Afrotheria	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	6756																ENSETEG00000017446 ##22	ENSETEG00000017442
Tenrec	MODERN SPECIES	6839																ENSETEG00000003612 ##22
Afrotheria_a	ANCESTRAL SPECIES	22	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000164047.c.b	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Elephant	MODERN SPECIES	375	MAPK4 (ENSLAFG00000013022)	ENSLAFG00000026060	SKA1 (ENSLAFG00000005238)	CXXC1 (ENSLAFG00000030706)	MBD1 (ENSLAFG00000031328)	ENSLAFG00000015611	MYO5B (ENSLAFG00000015591)	ACAA2 (ENSLAFG00000022796)	LIPG (ENSLAFG00000003595)	RPL17 (ENSLAFG00000005569)	C18orf32 (ENSLAFG00000021351)	DYM (ENSLAFG00000017747)	SMAD7 (ENSLAFG00000008013)	CTIF (ENSLAFG00000016335)	ZBTB7C (ENSLAFG00000003436)	SMAD2 (ENSLAFG00000000143) ##22	SKOR2 (ENSLAFG00000020778)	HDHD2 (ENSLAFG00000004419)	KATNAL2 (ENSLAFG00000004417)	PIAS2 (ENSLAFG00000018135) ##29	ST8SIA5 (ENSLAFG00000010716)	LOXHD1 (ENSLAFG00000008500)	ENSLAFG00000030824	ENSLAFG00000008497	C18orf25 (ENSLAFG00000013703)	ENSLAFG00000010897	ENSLAFG00000031983	ATP5F1A (ENSLAFG00000014779)	ENSLAFG00000002465	EPG5 (ENSLAFG00000002464)	SLC14A1 (ENSLAFG00000009224)
Hyrax	MODERN SPECIES	5775																SMAD2 (ENSPCAG00000012688) ##22
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Tree shrew	MODERN SPECIES	4030															ZBTB7C (ENSTBEG00000016322)	SMAD2 (ENSTBEG00000016121) ##22
Glires	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Lagomorpha	ANCESTRAL SPECIES	29	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000265446	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b.k	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Rabbit	MODERN SPECIES	20	CXXC1 (ENSOCUG00000025756)	MBD1 (ENSOCUG00000006554)	ENSOCUG00000017123	ENSOCUG00000037569	MYO5B (ENSOCUG00000009547)	ACAA2 (ENSOCUG00000016540)	LIPG (ENSOCUG00000013471)	ENSOCUG00000012485	ENSOCUG00000027094	ENSOCUG00000038051	DYM (ENSOCUG00000015851)	SMAD7 (ENSOCUG00000024309)	CTIF (ENSOCUG00000024842)	ENSOCUG00000026631	ZBTB7C (ENSOCUG00000022348)	SMAD2 (ENSOCUG00000011290) ##22	ENSOCUG00000027573	IER3IP1 (ENSOCUG00000012555)	HDHD2 (ENSOCUG00000006979)	ENSOCUG00000035984	ENSOCUG00000006940	KATNAL2 (ENSOCUG00000006971)	PIAS2 (ENSOCUG00000006900) ##29	ENSOCUG00000033989	RNF165 (ENSOCUG00000011801)	C18orf25 (ENSOCUG00000009573)	HAUS1 (ENSOCUG00000017483)	ENSOCUG00000003967	PSTPIP2 (ENSOCUG00000000324)	EPG5 (ENSOCUG00000003950)	SIGLEC15 (ENSOCUG00000023340)
Pika	MODERN SPECIES	3593																ENSOPRG00000014054 ##22
Rodentia	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.z	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	4	MRO (ENSSVLG00005022669)	MAPK4 (ENSSVLG00005022625)	SKA1 (ENSSVLG00005022508)	CXXC1 (ENSSVLG00005021998)	ENSSVLG00005021347	CFAP53 (ENSSVLG00005021141)	MYO5B (ENSSVLG00005020740)	ACAA2 (ENSSVLG00005020577)	LIPG (ENSSVLG00005020493)	ENSSVLG00005020364	ENSSVLG00005020326	DYM (ENSSVLG00005019977)	SMAD7 (ENSSVLG00005019787)	CTIF (ENSSVLG00005019619)	ZBTB7C (ENSSVLG00005019433)	ENSSVLG00005019379 ##22	SKOR2 (ENSSVLG00005019180)	ENSSVLG00005019150	HDHD2 (ENSSVLG00005019073)	ENSSVLG00005019019	KATNAL2 (ENSSVLG00005018737)	ENSSVLG00005018588 ##29	ST8SIA5 (ENSSVLG00005018346)	LOXHD1 (ENSSVLG00005016724)	RNF165 (ENSSVLG00005016476)	C18orf25 (ENSSVLG00005016394)	HAUS1 (ENSSVLG00005016339)	ATP5F1A (ENSSVLG00005016277)	ENSSVLG00005016239	PSTPIP2 (ENSSVLG00005016011)	EPG5 (ENSSVLG00005015968)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005015636	ENSSVLG00005015890	CABP5 (ENSSVLG00005015933)	ENSSVLG00005016000	ELSPBP1 (ENSSVLG00005016038)	BSPH1 (ENSSVLG00005016144)	ENSSVLG00005016193	PLA2G4C (ENSSVLG00005016365)	LIG1 (ENSSVLG00005016507)	ZSWIM9 (ENSSVLG00005016795)	ENSSVLG00005016818	ENSSVLG00005016867	ENSSVLG00005016918	ENSSVLG00005016954	ENSSVLG00005016972	ENSSVLG00005017037 ##22	ENSSVLG00005017076	ENSSVLG00005017091	ENSSVLG00005017112	ENSSVLG00005017163	EMP3 (ENSSVLG00005017530)	TMEM143 (ENSSVLG00005017613)	SYNGR4 (ENSSVLG00005017908)	ENSSVLG00005017961	GRIN2D (ENSSVLG00005018033)	GRWD1 (ENSSVLG00005018183)	KCNJ14 (ENSSVLG00005018257)	CYTH2 (ENSSVLG00005018286)	LMTK3 (ENSSVLG00005018367)	SULT2B1 (ENSSVLG00005018677)	FAM83E (ENSSVLG00005018800)
Marmotini	ANCESTRAL SPECIES	31	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT01030000236530	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.z	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Alpin marmot	MODERN SPECIES	10	MRO (ENSMMMG00000005705)	MAPK4 (ENSMMMG00000005718)	SKA1 (ENSMMMG00000005747)	CXXC1 (ENSMMMG00000005766)	MBD1 (ENSMMMG00000005802)	CFAP53 (ENSMMMG00000005890)	MYO5B (ENSMMMG00000005915)	ACAA2 (ENSMMMG00000006091)	LIPG (ENSMMMG00000006111)	ENSMMMG00000006135	C18orf32 (ENSMMMG00000006157)	DYM (ENSMMMG00000006170)	SMAD7 (ENSMMMG00000006202)	CTIF (ENSMMMG00000006232)	ZBTB7C (ENSMMMG00000006278)	SMAD2 (ENSMMMG00000006290) ##22	ENSMMMG00000006338	HDHD2 (ENSMMMG00000006342)	KATNAL2 (ENSMMMG00000006351)	PIAS2 (ENSMMMG00000006515) ##29	ST8SIA5 (ENSMMMG00000006633)	LOXHD1 (ENSMMMG00000006669)	RNF165 (ENSMMMG00000006757)	C18orf25 (ENSMMMG00000006777)	HAUS1 (ENSMMMG00000006810)	ATP5F1A (ENSMMMG00000006823)	PSTPIP2 (ENSMMMG00000006839)	EPG5 (ENSMMMG00000006854)	SIGLEC15 (ENSMMMG00000006905)	SLC14A1 (ENSMMMG00000006914)	SLC14A2 (ENSMMMG00000006939)
Marmotini_b	ANCESTRAL SPECIES	80	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22
Arctic ground squirrel	MODERN SPECIES	126	MAPK4 (ENSUPAG00010015372)	SKA1 (ENSUPAG00010015379)	CXXC1 (ENSUPAG00010015403)	MBD1 (ENSUPAG00010015449)	CFAP53 (ENSUPAG00010015532)	MYO5B (ENSUPAG00010015539)	ACAA2 (ENSUPAG00010015705)	LIPG (ENSUPAG00010015731)	ENSUPAG00010015756	C18orf32 (ENSUPAG00010015774)	DYM (ENSUPAG00010015792)	ENSUPAG00010015826	SMAD7 (ENSUPAG00010015842)	CTIF (ENSUPAG00010015848)	ZBTB7C (ENSUPAG00010015885)	SMAD2 (ENSUPAG00010015902) ##22
Squirrel	MODERN SPECIES	97	MAPK4 (ENSSTOG00000022822)	SKA1 (ENSSTOG00000003367)	CXXC1 (ENSSTOG00000029092)	MBD1 (ENSSTOG00000007780)	CFAP53 (ENSSTOG00000007769)	MYO5B (ENSSTOG00000019663)	ACAA2 (ENSSTOG00000020792)	LIPG (ENSSTOG00000016012)	ENSSTOG00000005193	C18orf32 (ENSSTOG00000024071)	DYM (ENSSTOG00000021838)	SMAD7 (ENSSTOG00000020985)	CTIF (ENSSTOG00000001967)	ZBTB7C (ENSSTOG00000011681)	ENSSTOG00000030530	SMAD2 (ENSSTOG00000003788) ##22
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029.q	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029.q	ENSGT00390000006029.p	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Guinea pig	MODERN SPECIES	14	MRO (ENSCPOG00000005618)	MAPK4 (ENSCPOG00000010565)	SKA1 (ENSCPOG00000013281)	CXXC1 (ENSCPOG00000020250)	MBD1 (ENSCPOG00000001671)	CFAP53 (ENSCPOG00000001668)	MYO5B (ENSCPOG00000014213)	ACAA2 (ENSCPOG00000004734)	LIPG (ENSCPOG00000008890)	ENSCPOG00000019337	C18orf32 (ENSCPOG00000034745)	DYM (ENSCPOG00000013484)	SMAD7 (ENSCPOG00000030295)	CTIF (ENSCPOG00000001049)	ZBTB7C (ENSCPOG00000040464)	SMAD2 (ENSCPOG00000013398) ##22	SKOR2 (ENSCPOG00000021920)	IER3IP1 (ENSCPOG00000040200)	HDHD2 (ENSCPOG00000030325)	KATNAL2 (ENSCPOG00000008150)	ENSCPOG00000003067 ##29	ST8SIA5 (ENSCPOG00000030161)	LOXHD1 (ENSCPOG00000009824)	RNF165 (ENSCPOG00000009298)	HAUS1 (ENSCPOG00000012723)	ATP5F1A (ENSCPOG00000012719)	PSTPIP2 (ENSCPOG00000004876)	EPG5 (ENSCPOG00000012114)	SLC14A1 (ENSCPOG00000007979)	ENSCPOG00000007976	SETBP1 (ENSCPOG00000011164)
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029.q	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Degu	MODERN SPECIES	44	ENSODEG00000018376	LIPG (ENSODEG00000018437)	ENSODEG00000018445	ENSODEG00000018444	ENSODEG00000018441	ENSODEG00000018384	C18orf32 (ENSODEG00000018385)	ENSODEG00000020491	ENSODEG00000018460	ENSODEG00000018365	ENSODEG00000018393	DYM (ENSODEG00000018486)	SMAD7 (ENSODEG00000018424)	CTIF (ENSODEG00000018390)	ZBTB7C (ENSODEG00000018417)	SMAD2 (ENSODEG00000018373) ##22	ENSODEG00000018377	ENSODEG00000018340	ENSODEG00000018367	SKOR2 (ENSODEG00000018363)	IER3IP1 (ENSODEG00000018375)	HDHD2 (ENSODEG00000018388)	KATNAL2 (ENSODEG00000018481)	ENSODEG00000018457	ENSODEG00000020536	ENSODEG00000018432 ##29	ST8SIA5 (ENSODEG00000018352)	ENSODEG00000020498	LOXHD1 (ENSODEG00000018482)	RNF165 (ENSODEG00000018412)	C18orf25 (ENSODEG00000018458)
Long-tailed chinchilla	MODERN SPECIES	109	CXXC1 (ENSCLAG00000010473)	MBD1 (ENSCLAG00000007457)	ENSCLAG00000008426	MYO5B (ENSCLAG00000013994)	ACAA2 (ENSCLAG00000008998)	ENSCLAG00000008597	ENSCLAG00000007196	LIPG (ENSCLAG00000011863)	ENSCLAG00000010369	ENSCLAG00000008914	C18orf32 (ENSCLAG00000008711)	DYM (ENSCLAG00000008080)	SMAD7 (ENSCLAG00000007063)	CTIF (ENSCLAG00000008174)	ZBTB7C (ENSCLAG00000012082)	SMAD2 (ENSCLAG00000011258) ##22	SKOR2 (ENSCLAG00000012544)	IER3IP1 (ENSCLAG00000007652)	HDHD2 (ENSCLAG00000006391)	KATNAL2 (ENSCLAG00000013657)	ENSCLAG00000011621 ##29	ST8SIA5 (ENSCLAG00000012639)	LOXHD1 (ENSCLAG00000011718)	RNF165 (ENSCLAG00000009534)	C18orf25 (ENSCLAG00000008611)	HAUS1 (ENSCLAG00000012155)	ATP5F1A (ENSCLAG00000014431)	ENSCLAG00000015055	PSTPIP2 (ENSCLAG00000011006)	EPG5 (ENSCLAG00000009230)	SIGLEC15 (ENSCLAG00000007394)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000045151	ENSHGLG00000048044	ENSHGLG00000037393	ENSHGLG00000008021	ENSHGLG00000038847	ENSHGLG00000006292	LIPG (ENSHGLG00000010224)	ENSHGLG00000047452	ENSHGLG00000036153	ENSHGLG00000009081	ENSHGLG00000015030	ENSHGLG00000040505	ENSHGLG00000048272	ENSHGLG00000042101	ENSHGLG00000031912	SMAD2 (ENSHGLG00000008711) ##22	SKOR2 (ENSHGLG00000035792)	ENSHGLG00000048898	HDHD2 (ENSHGLG00000010130)	ENSHGLG00000034217	ENSHGLG00000040167	PIAS2 (ENSHGLG00000015588) ##29	ST8SIA5 (ENSHGLG00000040367)	ENSHGLG00000006211	RNF165 (ENSHGLG00000035767)	C18orf25 (ENSHGLG00000041108)	ENSHGLG00000036445	ENSHGLG00000036850	ENSHGLG00000009522	PSTPIP2 (ENSHGLG00000005740)	SLC14A1 (ENSHGLG00000007316)
Naked mole-rat female	MODERN SPECIES	2	SPG20 (ENSHGLG00000003791)	CCDC169 (ENSHGLG00000032864)	ENSHGLG00000010793	ENSHGLG00000003703	ENSHGLG00000037090	ENSHGLG00000003756	MAB21L1 (ENSHGLG00000035394)	ENSHGLG00000004608	ENSHGLG00000013996	ENSHGLG00000021428	ENSHGLG00000019417	ENSHGLG00000021355	ENSHGLG00000032772	ENSHGLG00000018786	KL (ENSHGLG00000005334)	ENSHGLG00000006974 ##22	PDS5B (ENSHGLG00000006670)	ENSHGLG00000018160	ENSHGLG00000039341	N4BP2L1 (ENSHGLG00000006971)	BRCA2 (ENSHGLG00000008590)	ZAR1L (ENSHGLG00000006253)	ENSHGLG00000041019	ENSHGLG00000009415	ENSHGLG00000036768	ENSHGLG00000009276	ENSHGLG00000002160	ENSHGLG00000006352	ENSHGLG00000018220	ENSHGLG00000047678	ENSHGLG00000013471
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Kangaroo rat	MODERN SPECIES	362	Mro (ENSDORG00000004230)	ENSDORG00000028529	ENSDORG00000013704	Cxxc1 (ENSDORG00000000890)	Mbd1 (ENSDORG00000013917)	ENSDORG00000013915	Myo5b (ENSDORG00000013047)	Acaa2 (ENSDORG00000012365)	Lipg (ENSDORG00000015147)	ENSDORG00000026216	BC031181 (ENSDORG00000000327)	Dym (ENSDORG00000029874)	Smad7 (ENSDORG00000001837)	Ctif (ENSDORG00000003221)	Zbtb7c (ENSDORG00000002188)	Smad2 (ENSDORG00000013015) ##22	Skor2 (ENSDORG00000012420)	ENSDORG00000027748	Hdhd2 (ENSDORG00000012417)	Katnal2 (ENSDORG00000005500)
Myomorpha	ANCESTRAL SPECIES	35	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000023145	ENSJJAG00000012661	Acaa2 (ENSJJAG00000023029)	Lipg (ENSJJAG00000021249)	ENSJJAG00000017312	BC031181 (ENSJJAG00000013965)	Dym (ENSJJAG00000000543)	ENSJJAG00000011899	ENSJJAG00000014372	ENSJJAG00000011224	Smad7 (ENSJJAG00000017342)	Ctif (ENSJJAG00000013706)	ENSJJAG00000000639	Zbtb7c (ENSJJAG00000005484)	ENSJJAG00000000783	Smad2 (ENSJJAG00000021902) ##22	Skor2 (ENSJJAG00000013235)	ENSJJAG00000009768	Hdhd2 (ENSJJAG00000020515)	Katnal2 (ENSJJAG00000013360)	ENSJJAG00000021561 ##29	St8sia5 (ENSJJAG00000023613)	Loxhd1 (ENSJJAG00000012049)	Rnf165 (ENSJJAG00000014596)	8030462N17Rik (ENSJJAG00000015948)	ENSJJAG00000014908	ENSJJAG00000022136	Pstpip2 (ENSJJAG00000011600)	Epg5 (ENSJJAG00000008036)	Siglec15 (ENSJJAG00000011775)	Slc14a1 (ENSJJAG00000009670)
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1888											Dym (ENSNGAG00000020852)	ENSNGAG00000001549	Smad7 (ENSNGAG00000004962)	Ctif (ENSNGAG00000011452)	Zbtb7c (ENSNGAG00000012022)	Smad2 (ENSNGAG00000013343) ##22	Skor2 (ENSNGAG00000018430)	ENSNGAG00000020722	Hdhd2 (ENSNGAG00000000250)	Katnal2 (ENSNGAG00000010954)	Pias2 (ENSNGAG00000010511) ##29	St8sia5 (ENSNGAG00000017269)	Loxhd1 (ENSNGAG00000020158)	Rnf165 (ENSNGAG00000012965)	8030462N17Rik (ENSNGAG00000014428)	Haus1 (ENSNGAG00000001553)	Atp5a1 (ENSNGAG00000009807)	Pstpip2 (ENSNGAG00000018122)	Epg5 (ENSNGAG00000005612)	Siglec15 (ENSNGAG00000013867)	Slc14a1 (ENSNGAG00000014056)
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.u	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a.e
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.u	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a.e
Northern American deer mouse	MODERN SPECIES	10	Mapk4 (ENSPEMG00000023783)	Ska1 (ENSPEMG00000021084)	Cxxc1 (ENSPEMG00000022532)	Mbd1 (ENSPEMG00000022630)	Cfap53 (ENSPEMG00000024092)	Myo5b (ENSPEMG00000020539)	Acaa2 (ENSPEMG00000022034)	ENSPEMG00000025726	ENSPEMG00000028900	Lipg (ENSPEMG00000021868)	Rpl17 (ENSPEMG00000001520)	Dym (ENSPEMG00000020826)	Smad7 (ENSPEMG00000021331)	Ctif (ENSPEMG00000022746)	Zbtb7c (ENSPEMG00000020629)	Smad2 (ENSPEMG00000020383) ##22	Skor2 (ENSPEMG00000022190)	ENSPEMG00000026193	Hdhd2 (ENSPEMG00000020912)	Katnal2 (ENSPEMG00000021096)	Pias2 (ENSPEMG00000022220) ##29	St8sia5 (ENSPEMG00000022119)	Loxhd1 (ENSPEMG00000022919)	ENSPEMG00000029031	8030462N17Rik (ENSPEMG00000010341)	Haus1 (ENSPEMG00000021388)	Atp5a1 (ENSPEMG00000022004)	Pstpip2 (ENSPEMG00000022379)	Epg5 (ENSPEMG00000022153)	Siglec15 (ENSPEMG00000024146)	ENSPEMG00000028869
Prairie vole	MODERN SPECIES	5	Mro (ENSMOCG00000001134)	Mapk4 (ENSMOCG00000017622)	Ska1 (ENSMOCG00000000860)	Cxxc1 (ENSMOCG00000018819)	ENSMOCG00000011976	ENSMOCG00000008152	Myo5b (ENSMOCG00000022368)	Acaa2 (ENSMOCG00000004236)	Lipg (ENSMOCG00000020738)	Rpl17 (ENSMOCG00000012741)	BC031181 (ENSMOCG00000012446)	Dym (ENSMOCG00000022593)	Smad7 (ENSMOCG00000001269)	Ctif (ENSMOCG00000020507)	Zbtb7c (ENSMOCG00000017640)	Smad2 (ENSMOCG00000017648) ##22	Skor2 (ENSMOCG00000018264)	ENSMOCG00000009073	Hdhd2 (ENSMOCG00000008063)	Katnal2 (ENSMOCG00000011716)	Pias2 (ENSMOCG00000015605) ##29	St8sia5 (ENSMOCG00000011361)	Loxhd1 (ENSMOCG00000016732)	ENSMOCG00000019837	8030462N17Rik (ENSMOCG00000000844)	Haus1 (ENSMOCG00000011366)	Atp5a1 (ENSMOCG00000009175)	Pstpip2 (ENSMOCG00000006361)	Epg5 (ENSMOCG00000015567)	Siglec15 (ENSMOCG00000007709)	ENSMOCG00000002421
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.u	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a.e
Chinese hamster chok1gshd	MODERN SPECIES	314															Zbtb7c (ENSCGRG00001005320)	Smad2 (ENSCGRG00001006348) ##22	Skor2 (ENSCGRG00001007925)	Hdhd2 (ENSCGRG00001009445)	Katnal2 (ENSCGRG00001010923)	Pias2 (ENSCGRG00001023617) ##29	St8sia5 (ENSCGRG00001004611)	Loxhd1 (ENSCGRG00001009440)	Rnf165 (ENSCGRG00001011050)	8030462N17Rik (ENSCGRG00001011465)	Haus1 (ENSCGRG00001012089)	Atp5a1 (ENSCGRG00001012335)	Pstpip2 (ENSCGRG00001012933)	Epg5 (ENSCGRG00001013764)	Siglec15 (ENSCGRG00001014278)	ENSCGRG00001014534	Slc14a1 (ENSCGRG00001014682)
Golden Hamster	MODERN SPECIES	680	Mapk4 (ENSMAUG00000017116)	Ska1 (ENSMAUG00000003566)	Cxxc1 (ENSMAUG00000015537)	ENSMAUG00000021798	ENSMAUG00000010397	Myo5b (ENSMAUG00000000930)	Acaa2 (ENSMAUG00000018671)	Lipg (ENSMAUG00000000351)	Rpl17 (ENSMAUG00000015927)	BC031181 (ENSMAUG00000019483)	Dym (ENSMAUG00000017721)	ENSMAUG00000020878	Smad7 (ENSMAUG00000020326)	Ctif (ENSMAUG00000000656)	Zbtb7c (ENSMAUG00000000374)	Smad2 (ENSMAUG00000006737) ##22	Skor2 (ENSMAUG00000016006)	ENSMAUG00000012040	Hdhd2 (ENSMAUG00000019526)	Katnal2 (ENSMAUG00000019836)	Pias2 (ENSMAUG00000014565) ##29	St8sia5 (ENSMAUG00000011966)	Loxhd1 (ENSMAUG00000010353)	Rnf165 (ENSMAUG00000017550)	8030462N17Rik (ENSMAUG00000006561)	Haus1 (ENSMAUG00000009723)	Atp5f1a (ENSMAUG00000019838)	Pstpip2 (ENSMAUG00000014774)	Epg5 (ENSMAUG00000019707)	Siglec15 (ENSMAUG00000000352)	Slc14a1 (ENSMAUG00000014121)
Murinae	ANCESTRAL SPECIES	17	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Mus	ANCESTRAL SPECIES	19	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Mus_A	ANCESTRAL SPECIES	19	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Mus_B	ANCESTRAL SPECIES	19	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Mus_C	ANCESTRAL SPECIES	16	ENSGT00940000159850	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
spretus	MODERN SPECIES	9	Mro (MGP_SPRETEiJ_G0023308)	Mapk4 (MGP_SPRETEiJ_G0023309)	MGP_SPRETEiJ_G0023310	Ska1 (MGP_SPRETEiJ_G0023311)	Cxxc1 (MGP_SPRETEiJ_G0023312)	Cfap53 (MGP_SPRETEiJ_G0023313)	Myo5b (MGP_SPRETEiJ_G0023314)	Acaa2 (MGP_SPRETEiJ_G0023315)	Lipg (MGP_SPRETEiJ_G0023316)	MGP_SPRETEiJ_G0023317	BC031181 (MGP_SPRETEiJ_G0023318)	Dym (MGP_SPRETEiJ_G0023319)	Smad7 (MGP_SPRETEiJ_G0023320)	Ctif (MGP_SPRETEiJ_G0023321)	Zbtb7c (MGP_SPRETEiJ_G0023322)	Smad2 (MGP_SPRETEiJ_G0023323) ##22	Skor2 (MGP_SPRETEiJ_G0023324)	MGP_SPRETEiJ_G0023325	Hdhd2 (MGP_SPRETEiJ_G0023326)	Katnal2 (MGP_SPRETEiJ_G0023327)	Pias2 (MGP_SPRETEiJ_G0023328) ##29	MGP_SPRETEiJ_G0023329	St8sia5 (MGP_SPRETEiJ_G0023330)	Loxhd1 (MGP_SPRETEiJ_G0023331)	8030462N17Rik (MGP_SPRETEiJ_G0023333)	Haus1 (MGP_SPRETEiJ_G0023334)	Atp5a1 (MGP_SPRETEiJ_G0023335)	Pstpip2 (MGP_SPRETEiJ_G0023336)	Epg5 (MGP_SPRETEiJ_G0023337)	Siglec15 (MGP_SPRETEiJ_G0023338)	Slc14a1 (MGP_SPRETEiJ_G0023339)
Steppe mouse	MODERN SPECIES	3130					ENSMSIG00000019349	Lipg (ENSMSIG00000019321)	Rpl17 (ENSMSIG00000019275)	BC031181 (ENSMSIG00000019259)	ENSMSIG00000019247	Dym (ENSMSIG00000019180)	Smad7 (ENSMSIG00000019123)	ENSMSIG00000019110	Ctif (ENSMSIG00000019005)	Zbtb7c (ENSMSIG00000018967)	ENSMSIG00000018946	Smad2 (ENSMSIG00000018887) ##22	Skor2 (ENSMSIG00000018834)	ENSMSIG00000018819	Hdhd2 (ENSMSIG00000018790)	Katnal2 (ENSMSIG00000018633)	ENSMSIG00000018626 ##29
Mouse	MODERN SPECIES	9	Mro (ENSMUSG00000064036)	Mapk4 (ENSMUSG00000024558)	Ska1 (ENSMUSG00000036223)	Cxxc1 (ENSMUSG00000024560)	Mbd1 (ENSMUSG00000024561)	Cfap53 (ENSMUSG00000035394)	Myo5b (ENSMUSG00000025885)	Acaa2 (ENSMUSG00000036880)	Lipg (ENSMUSG00000053846)	Rpl17 (ENSMUSG00000062328)	BC031181 (ENSMUSG00000036299)	Dym (ENSMUSG00000035765)	Smad7 (ENSMUSG00000025880)	Ctif (ENSMUSG00000052928)	Zbtb7c (ENSMUSG00000044646)	Smad2 (ENSMUSG00000024563) ##22	Skor2 (ENSMUSG00000091519)	Ier3ip1 (ENSMUSG00000090000)	Hdhd2 (ENSMUSG00000025421)	Katnal2 (ENSMUSG00000025420)	Pias2 (ENSMUSG00000025423) ##29	St8sia5 (ENSMUSG00000025425)	Loxhd1 (ENSMUSG00000032818)	Rnf165 (ENSMUSG00000025427)	8030462N17Rik (ENSMUSG00000047466)	Haus1 (ENSMUSG00000041840)	Atp5a1 (ENSMUSG00000025428)	Pstpip2 (ENSMUSG00000025429)	Epg5 (ENSMUSG00000039840)	Siglec15 (ENSMUSG00000091055)	Slc14a1 (ENSMUSG00000059336)
Ryukyu mouse	MODERN SPECIES	9	Mro (MGP_CAROLIEiJ_G0022395)	Mapk4 (MGP_CAROLIEiJ_G0022396)	MGP_CAROLIEiJ_G0022397	Ska1 (MGP_CAROLIEiJ_G0022398)	Cxxc1 (MGP_CAROLIEiJ_G0022399)	Cfap53 (MGP_CAROLIEiJ_G0022400)	Myo5b (MGP_CAROLIEiJ_G0022401)	Acaa2 (MGP_CAROLIEiJ_G0022402)	Lipg (MGP_CAROLIEiJ_G0022403)	Rpl17 (MGP_CAROLIEiJ_G0022404)	BC031181 (MGP_CAROLIEiJ_G0022405)	Dym (MGP_CAROLIEiJ_G0022406)	Smad7 (MGP_CAROLIEiJ_G0022407)	Ctif (MGP_CAROLIEiJ_G0022408)	Zbtb7c (MGP_CAROLIEiJ_G0022409)	Smad2 (MGP_CAROLIEiJ_G0022410) ##22	Skor2 (MGP_CAROLIEiJ_G0022411)	MGP_CAROLIEiJ_G0022412	Hdhd2 (MGP_CAROLIEiJ_G0022413)	Katnal2 (MGP_CAROLIEiJ_G0022414)	Pias2 (MGP_CAROLIEiJ_G0022415) ##29	MGP_CAROLIEiJ_G0022416	St8sia5 (MGP_CAROLIEiJ_G0022417)	Loxhd1 (MGP_CAROLIEiJ_G0022418)	Rnf165 (MGP_CAROLIEiJ_G0022419)	8030462N17Rik (MGP_CAROLIEiJ_G0022420)	Haus1 (MGP_CAROLIEiJ_G0022421)	Atp5a1 (MGP_CAROLIEiJ_G0022422)	Pstpip2 (MGP_CAROLIEiJ_G0022423)	MGP_CAROLIEiJ_G0022424	Siglec15 (MGP_CAROLIEiJ_G0022425)
Shrew mouse	MODERN SPECIES	6	Mapk4 (MGP_PahariEiJ_G0019124)	MGP_PahariEiJ_G0019125	Ska1 (MGP_PahariEiJ_G0019126)	Cxxc1 (MGP_PahariEiJ_G0019127)	MGP_PahariEiJ_G0019128	Cfap53 (MGP_PahariEiJ_G0019129)	Myo5b (MGP_PahariEiJ_G0019130)	Acaa2 (MGP_PahariEiJ_G0019131)	Lipg (MGP_PahariEiJ_G0019132)	Rpl17 (MGP_PahariEiJ_G0019133)	BC031181 (MGP_PahariEiJ_G0019134)	Dym (MGP_PahariEiJ_G0019135)	Smad7 (MGP_PahariEiJ_G0019136)	Ctif (MGP_PahariEiJ_G0019137)	Zbtb7c (MGP_PahariEiJ_G0019138)	Smad2 (MGP_PahariEiJ_G0019139) ##22	Skor2 (MGP_PahariEiJ_G0019140)	MGP_PahariEiJ_G0019141	Hdhd2 (MGP_PahariEiJ_G0019142)	Katnal2 (MGP_PahariEiJ_G0019143)	Pias2 (MGP_PahariEiJ_G0019144) ##29	MGP_PahariEiJ_G0019145	St8sia5 (MGP_PahariEiJ_G0019146)	MGP_PahariEiJ_G0019147	Rnf165 (MGP_PahariEiJ_G0019148)	8030462N17Rik (MGP_PahariEiJ_G0019149)	Haus1 (MGP_PahariEiJ_G0019150)	Atp5a1 (MGP_PahariEiJ_G0019151)	Pstpip2 (MGP_PahariEiJ_G0019152)	Epg5 (MGP_PahariEiJ_G0019153)	Siglec15 (MGP_PahariEiJ_G0019154)
Rat	MODERN SPECIES	9	Mapk4 (ENSRNOG00000015401)	Ska1 (ENSRNOG00000015275)	Cxxc1 (ENSRNOG00000014614)	Cfap53 (ENSRNOG00000014585)	Mbd1 (ENSRNOG00000024104)	Myo5b (ENSRNOG00000014104)	Acaa2 (ENSRNOG00000013766)	Lipg (ENSRNOG00000018694)	Slc25a6 (ENSRNOG00000042387)	Rpl17 (ENSRNOG00000018680)	Dym (ENSRNOG00000018425)	Smad7 (ENSRNOG00000018359)	Ctif (ENSRNOG00000018342)	ENSRNOG00000067472	Zbtb7c (ENSRNOG00000047924)	Smad2 (ENSRNOG00000018140) ##22	Skor2 (ENSRNOG00000018006)	Ier3ip1 (ENSRNOG00000043171)	Katnal2 (ENSRNOG00000017788)	Pias2 (ENSRNOG00000017493) ##29	St8sia5 (ENSRNOG00000022691)	Loxhd1 (ENSRNOG00000017410)	Rnf165 (ENSRNOG00000048824)	RGD1308601 (ENSRNOG00000017215)	ENSRNOG00000063575	Haus1 (ENSRNOG00000017067)	Atp5f1a (ENSRNOG00000017032)	Pstpip2 (ENSRNOG00000016987)	Epg5 (ENSRNOG00000052894)	Siglec15 (ENSRNOG00000033588)	Slc14a1 (ENSRNOG00000016753)
Primates	ANCESTRAL SPECIES	24	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Lemuriformes	ANCESTRAL SPECIES	25	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.e	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Mouse lemur	MODERN SPECIES	10	MRO (ENSMICG00000008008)	MAPK4 (ENSMICG00000015044)	SKA1 (ENSMICG00000006429)	CXXC1 (ENSMICG00000006424)	MBD1 (ENSMICG00000006414)	CFAP53 (ENSMICG00000006410)	MYO5B (ENSMICG00000005287)	ACAA2 (ENSMICG00000005278)	LIPG (ENSMICG00000017104)	ENSMICG00000017102	C18orf32 (ENSMICG00000042525)	DYM (ENSMICG00000017535)	SMAD7 (ENSMICG00000034183)	CTIF (ENSMICG00000010167)	ZBTB7C (ENSMICG00000038331)	SMAD2 (ENSMICG00000007882) ##22	SKOR2 (ENSMICG00000031129)	IER3IP1 (ENSMICG00000043887)	HDHD2 (ENSMICG00000042121)	KATNAL2 (ENSMICG00000007857)	PIAS2 (ENSMICG00000013229) ##29	ST8SIA5 (ENSMICG00000013224)	ENSMICG00000017500	LOXHD1 (ENSMICG00000001316)	RNF165 (ENSMICG00000011741)	C18orf25 (ENSMICG00000004834)	HAUS1 (ENSMICG00000017501)	ENSMICG00000028901	PSTPIP2 (ENSMICG00000017499)	EPG5 (ENSMICG00000017498)	SIGLEC15 (ENSMICG00000017497)
Lemuriformes_a	ANCESTRAL SPECIES	62	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.e	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Greater bamboo lemur	MODERN SPECIES	606	MRO (ENSPSMG00000019937)	MAPK4 (ENSPSMG00000019888)	SKA1 (ENSPSMG00000019864)	CXXC1 (ENSPSMG00000019839)	MBD1 (ENSPSMG00000019377)	CFAP53 (ENSPSMG00000019120)	MYO5B (ENSPSMG00000019098)	ACAA2 (ENSPSMG00000018945)	LIPG (ENSPSMG00000018901)	ENSPSMG00000018857	ENSPSMG00000018846	DYM (ENSPSMG00000018799)	SMAD7 (ENSPSMG00000018729)	CTIF (ENSPSMG00000018691)	ZBTB7C (ENSPSMG00000018657)	SMAD2 (ENSPSMG00000018402) ##22	SKOR2 (ENSPSMG00000018268)	ENSPSMG00000018261	HDHD2 (ENSPSMG00000018254)	ENSPSMG00000018244	KATNAL2 (ENSPSMG00000018239)	PIAS2 (ENSPSMG00000018197) ##29	ST8SIA5 (ENSPSMG00000018127)
Coquerels sifaka	MODERN SPECIES	262								ACAA2 (ENSPCOG00000021233)	LIPG (ENSPCOG00000017489)	ENSPCOG00000024759	C18orf32 (ENSPCOG00000028796)	DYM (ENSPCOG00000010198)	SMAD7 (ENSPCOG00000003237)	CTIF (ENSPCOG00000013391)	ZBTB7C (ENSPCOG00000019918)	SMAD2 (ENSPCOG00000000934) ##22	SKOR2 (ENSPCOG00000016973)	IER3IP1 (ENSPCOG00000000443)	HDHD2 (ENSPCOG00000024401)	KATNAL2 (ENSPCOG00000013440)	PIAS2 (ENSPCOG00000028397) ##29	ST8SIA5 (ENSPCOG00000021186)	LOXHD1 (ENSPCOG00000027350)	RNF165 (ENSPCOG00000017842)	C18orf25 (ENSPCOG00000026561)	HAUS1 (ENSPCOG00000024124)	ATP5F1A (ENSPCOG00000017027)	PSTPIP2 (ENSPCOG00000021273)	EPG5 (ENSPCOG00000026516)	SIGLEC15 (ENSPCOG00000026160)	SLC14A1 (ENSPCOG00000027560)
Bushbaby	MODERN SPECIES	127	ME2 (ENSOGAG00000010482)	MRO (ENSOGAG00000016668)	MAPK4 (ENSOGAG00000016663)	SKA1 (ENSOGAG00000016657)	CXXC1 (ENSOGAG00000033715)	MBD1 (ENSOGAG00000003784)	ENSOGAG00000003781	MYO5B (ENSOGAG00000016529)	ACAA2 (ENSOGAG00000016527)	LIPG (ENSOGAG00000016524)	ENSOGAG00000029213	DYM (ENSOGAG00000013935)	SMAD7 (ENSOGAG00000013932)	CTIF (ENSOGAG00000013927)	ZBTB7C (ENSOGAG00000000444)	SMAD2 (ENSOGAG00000000443) ##22	SKOR2 (ENSOGAG00000032696)	IER3IP1 (ENSOGAG00000016626)	HDHD2 (ENSOGAG00000016619)	KATNAL2 (ENSOGAG00000016612)	PIAS2 (ENSOGAG00000012636) ##29	ST8SIA5 (ENSOGAG00000012633)	LOXHD1 (ENSOGAG00000012621)	RNF165 (ENSOGAG00000025147)	C18orf25 (ENSOGAG00000005093)	HAUS1 (ENSOGAG00000005096)	ENSOGAG00000026684	PSTPIP2 (ENSOGAG00000007141)	ENSOGAG00000029113	SIGLEC15 (ENSOGAG00000024686)	SLC14A1 (ENSOGAG00000016407)
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Tarsier	MODERN SPECIES	3291																SMAD2 (ENSTSYG00000005303) ##22
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.c	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029.a	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Cebidae	ANCESTRAL SPECIES	28	ENSGT00390000011654.c	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741.ab	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741.`b.a	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029.a	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Marmoset	MODERN SPECIES	4	CFAP53 (ENSCJAG00000004928)	MYO5B (ENSCJAG00000004857)	ACAA2 (ENSCJAG00000004820)	ENSCJAG00000073947	ENSCJAG00000078071	LIPG (ENSCJAG00000004803)	ENSCJAG00000004779	ENSCJAG00000076436	DYM (ENSCJAG00000004754)	ENSCJAG00000060917	ENSCJAG00000067581	SMAD7 (ENSCJAG00000039611)	CTIF (ENSCJAG00000004729)	ZBTB7C (ENSCJAG00000004704)	ENSCJAG00000081448	SMAD2 (ENSCJAG00000004630) ##22	ENSCJAG00000071063	SKOR2 (ENSCJAG00000048253)	IER3IP1 (ENSCJAG00000072341)	HDHD2 (ENSCJAG00000004578)	ENSCJAG00000060346	KATNAL2 (ENSCJAG00000008107)	PIAS2 (ENSCJAG00000008199) ##29	ST8SIA5 (ENSCJAG00000081047)	LOXHD1 (ENSCJAG00000008221)	RNF165 (ENSCJAG00000073766)	ENSCJAG00000075854	C18orf25 (ENSCJAG00000008285)	ENSCJAG00000079309	HAUS1 (ENSCJAG00000008303)	ENSCJAG00000008319
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00390000011654.c	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741.ab	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741.`b.a	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00940000154677.g.a.d	ENSGT00390000016167.g	ENSGT00390000006029.a	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Bolivian squirrel monkey	MODERN SPECIES	58	MRO (ENSSBOG00000029231)	MAPK4 (ENSSBOG00000034699)	ENSSBOG00000029260	CXXC1 (ENSSBOG00000020380)	MBD1 (ENSSBOG00000027169)	MYO5B (ENSSBOG00000024887)	ACAA2 (ENSSBOG00000029056)	ENSSBOG00000034832	LIPG (ENSSBOG00000017170)	ENSSBOG00000026485	C18orf32 (ENSSBOG00000027273)	DYM (ENSSBOG00000031374)	SMAD7 (ENSSBOG00000028839)	CTIF (ENSSBOG00000028468)	ZBTB7C (ENSSBOG00000027938)	SMAD2 (ENSSBOG00000036148) ##22	ENSSBOG00000019181	ENSSBOG00000019888	IER3IP1 (ENSSBOG00000028824)	HDHD2 (ENSSBOG00000023121)	KATNAL2 (ENSSBOG00000024912)	ENSSBOG00000029772
Capuchin	MODERN SPECIES	60	SKA1 (ENSCCAG00000011220)	CXXC1 (ENSCCAG00000013415)	MBD1 (ENSCCAG00000034600)	CFAP53 (ENSCCAG00000037510)	MYO5B (ENSCCAG00000027793)	ACAA2 (ENSCCAG00000026857)	ENSCCAG00000001466	LIPG (ENSCCAG00000023643)	RPL17 (ENSCCAG00000024026)	ENSCCAG00000023815	DYM (ENSCCAG00000032314)	ENSCCAG00000037376	SMAD7 (ENSCCAG00000033513)	CTIF (ENSCCAG00000022758)	ZBTB7C (ENSCCAG00000034868)	SMAD2 (ENSCCAG00000036243) ##22	ENSCCAG00000037809	SKOR2 (ENSCCAG00000021025)	IER3IP1 (ENSCCAG00000036067)	HDHD2 (ENSCCAG00000022419)	KATNAL2 (ENSCCAG00000027056)	ENSCCAG00000033839	PIAS2 (ENSCCAG00000022843) ##29	ST8SIA5 (ENSCCAG00000023326)	LOXHD1 (ENSCCAG00000024237)	RNF165 (ENSCCAG00000015794)	ENSCCAG00000028369	C18orf25 (ENSCCAG00000013731)	HAUS1 (ENSCCAG00000026991)	ATP5F1A (ENSCCAG00000035404)	PSTPIP2 (ENSCCAG00000026201)
Mas night monkey	MODERN SPECIES	426		MAPK4 (ENSANAG00000030817)	ENSANAG00000027371	CXXC1 (ENSANAG00000026512)	MBD1 (ENSANAG00000036253)	CFAP53 (ENSANAG00000038121)	MYO5B (ENSANAG00000027712)	ACAA2 (ENSANAG00000033683)	LIPG (ENSANAG00000020805)	ENSANAG00000038237	ENSANAG00000032933	DYM (ENSANAG00000029190)	SMAD7 (ENSANAG00000028079)	CTIF (ENSANAG00000024925)	ZBTB7C (ENSANAG00000033116)	SMAD2 (ENSANAG00000031458) ##22	ENSANAG00000030706	SKOR2 (ENSANAG00000030804)	IER3IP1 (ENSANAG00000023921)	ENSANAG00000023759	HDHD2 (ENSANAG00000036024)	KATNAL2 (ENSANAG00000030359)	ENSANAG00000027601	PIAS2 (ENSANAG00000036127) ##29	ST8SIA5 (ENSANAG00000020554)	LOXHD1 (ENSANAG00000026289)	RNF165 (ENSANAG00000032671)	C18orf25 (ENSANAG00000015359)	ENSANAG00000034812	ATP5F1A (ENSANAG00000020684)	ENSANAG00000036960
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788	ENSGT00390000007354
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D.k	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT00390000002428.a.g.b.a.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788
Hominidae	ANCESTRAL SPECIES	24	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D.k	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT00390000002428.a.g.b.a.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b.gb	ENSGT01030000234626.D.k	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT00390000002428.a.g.b.a.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b.gb	ENSGT01030000234626.D.k	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT00390000002428.a.g.b.a.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788
Pan	ANCESTRAL SPECIES	24	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b.gb	ENSGT01030000234626.D.k	ENSGT00940000159394	ENSGT00390000013264.c.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00910000148711	ENSGT00390000016823.q	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT00390000002428.a.g.b.a.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i
Chimpanzee	MODERN SPECIES	9	CXXC1 (ENSPTRG00000010022)	MBD1 (ENSPTRG00000010021)	CFAP53 (ENSPTRG00000010020)	MYO5B (ENSPTRG00000010019)	ACAA2 (ENSPTRG00000010016)	LIPG (ENSPTRG00000010015)	ENSPTRG00000043609	RPL17 (ENSPTRG00000010012)	C18H18orf32 (ENSPTRG00000033700)	DYM (ENSPTRG00000010011)	SMAD7 (ENSPTRG00000010010)	CTIF (ENSPTRG00000010009)	ENSPTRG00000045008	ENSPTRG00000050449	ZBTB7C (ENSPTRG00000010006)	SMAD2 (ENSPTRG00000043695) ##22	ENSPTRG00000051707	ENSPTRG00000049336	ENSPTRG00000051288	SKOR2 (ENSPTRG00000033850)	IER3IP1 (ENSPTRG00000010002)	HDHD2 (ENSPTRG00000010001)	ELOA2 (ENSPTRG00000029302)	ENSPTRG00000041809	KATNAL2 (ENSPTRG00000009999)	PIAS2 (ENSPTRG00000009998) ##29	ST8SIA5 (ENSPTRG00000009997)	LOXHD1 (ENSPTRG00000009995)	RNF165 (ENSPTRG00000009994)	C18orf25 (ENSPTRG00000009993)	HAUS1 (ENSPTRG00000009992)
Bonobo	MODERN SPECIES	9	CXXC1 (ENSPPAG00000028863)	MBD1 (ENSPPAG00000038886)	CFAP53 (ENSPPAG00000035491)	MYO5B (ENSPPAG00000042788)	ACAA2 (ENSPPAG00000039219)	LIPG (ENSPPAG00000034597)	ENSPPAG00000032490	ENSPPAG00000028848	C18orf32 (ENSPPAG00000027512)	DYM (ENSPPAG00000033907)	ENSPPAG00000031318	CTIF (ENSPPAG00000023554)	ENSPPAG00000041550	ENSPPAG00000033132	ZBTB7C (ENSPPAG00000039903)	SMAD2 (ENSPPAG00000035419) ##22	ENSPPAG00000032994	ENSPPAG00000030667	IER3IP1 (ENSPPAG00000029166)	HDHD2 (ENSPPAG00000028597)	ENSPPAG00000028060	ENSPPAG00000027606	KATNAL2 (ENSPPAG00000019290)	PIAS2 (ENSPPAG00000035511) ##29	ST8SIA5 (ENSPPAG00000032695)	LOXHD1 (ENSPPAG00000023447)	RNF165 (ENSPPAG00000035141)	C18orf25 (ENSPPAG00000034677)	HAUS1 (ENSPPAG00000034062)	ATP5F1A (ENSPPAG00000030055)	ENSPPAG00000028807
Human	MODERN SPECIES	9	MAPK4 (ENSG00000141639)	SKA1 (ENSG00000154839)	CXXC1 (ENSG00000154832)	MBD1 (ENSG00000141644)	CFAP53 (ENSG00000172361)	MYO5B (ENSG00000167306)	ACAA2 (ENSG00000167315)	LIPG (ENSG00000101670)	RPL17 (ENSG00000265681)	RPL17-C18orf32 (ENSG00000215472)	C18orf32 (ENSG00000177576)	DYM (ENSG00000141627)	SMAD7 (ENSG00000101665)	CTIF (ENSG00000134030)	ZBTB7C (ENSG00000184828)	SMAD2 (ENSG00000175387) ##22	SKOR2 (ENSG00000215474)	IER3IP1 (ENSG00000134049)	HDHD2 (ENSG00000167220)	ELOA2 (ENSG00000206181)	KATNAL2 (ENSG00000167216)	PIAS2 (ENSG00000078043) ##29	ST8SIA5 (ENSG00000101638)	LOXHD1 (ENSG00000167210)	RNF165 (ENSG00000141622)	C18orf25 (ENSG00000152242)	HAUS1 (ENSG00000152240)	ATP5F1A (ENSG00000152234)	PSTPIP2 (ENSG00000152229)	SIGLEC15 (ENSG00000197046)	EPG5 (ENSG00000152223)
Gorilla	MODERN SPECIES	9	MAPK4 (ENSGGOG00000010469)	SKA1 (ENSGGOG00000016643)	CXXC1 (ENSGGOG00000016976)	MBD1 (ENSGGOG00000016966)	MYO5B (ENSGGOG00000008585)	ACAA2 (ENSGGOG00000012552)	LIPG (ENSGGOG00000000595)	RPL17 (ENSGGOG00000026697)	ENSGGOG00000027474	DYM (ENSGGOG00000028457)	ENSGGOG00000010554	CTIF (ENSGGOG00000015204)	ENSGGOG00000037898	ENSGGOG00000022625	ZBTB7C (ENSGGOG00000008438)	SMAD2 (ENSGGOG00000004706) ##22	ENSGGOG00000037285	SKOR2 (ENSGGOG00000006679)	ENSGGOG00000022397	IER3IP1 (ENSGGOG00000027939)	HDHD2 (ENSGGOG00000016414)	ENSGGOG00000010534	ENSGGOG00000044154	ENSGGOG00000041035	ENSGGOG00000040155	KATNAL2 (ENSGGOG00000006796)	PIAS2 (ENSGGOG00000025821) ##29	ST8SIA5 (ENSGGOG00000013794)	LOXHD1 (ENSGGOG00000005588)	RNF165 (ENSGGOG00000005584)	HAUS1 (ENSGGOG00000010098)
Orangutan	MODERN SPECIES	9	ENSPPYG00000041514	MAPK4 (ENSPPYG00000009161)	SKA1 (ENSPPYG00000009159)	CXXC1 (ENSPPYG00000031882)	MBD1 (ENSPPYG00000009158)	CFAP53 (ENSPPYG00000009157)	MYO5B (ENSPPYG00000009155)	ACAA2 (ENSPPYG00000009154)	LIPG (ENSPPYG00000009153)	ENSPPYG00000009151	C18orf32 (ENSPPYG00000033389)	DYM (ENSPPYG00000009149)	SMAD7 (ENSPPYG00000009148)	CTIF (ENSPPYG00000009147)	ZBTB7C (ENSPPYG00000009145)	SMAD2 (ENSPPYG00000009144) ##22	ENSPPYG00000037397	ENSPPYG00000030833	SKOR2 (ENSPPYG00000009142)	IER3IP1 (ENSPPYG00000009140)	HDHD2 (ENSPPYG00000009139)	ENSPPYG00000009137	KATNAL2 (ENSPPYG00000009138)	PIAS2 (ENSPPYG00000009136) ##29	ST8SIA5 (ENSPPYG00000009135)	LOXHD1 (ENSPPYG00000009134)	RNF165 (ENSPPYG00000009133)	C18H18orf25 (ENSPPYG00000009132)	HAUS1 (ENSPPYG00000009131)	ATP5F1A (ENSPPYG00000009130)	PSTPIP2 (ENSPPYG00000009129)
Gibbon	MODERN SPECIES	19	ENSNLEG00000011661	CFAP53 (ENSNLEG00000011645)	MYO5B (ENSNLEG00000011609)	ACAA2 (ENSNLEG00000011576)	LIPG (ENSNLEG00000011556)	ENSNLEG00000034341	ENSNLEG00000029836	C18orf32 (ENSNLEG00000011553)	ENSNLEG00000011539	ENSNLEG00000032202	SMAD7 (ENSNLEG00000034951)	CTIF (ENSNLEG00000011503)	ENSNLEG00000030200	ENSNLEG00000011500	ZBTB7C (ENSNLEG00000011492)	SMAD2 (ENSNLEG00000011463) ##22	ENSNLEG00000011462	ENSNLEG00000029516	ENSNLEG00000029297	IER3IP1 (ENSNLEG00000011450)	ENSNLEG00000029962	HDHD2 (ENSNLEG00000036069)	KATNAL2 (ENSNLEG00000011402)	ELOA2 (ENSNLEG00000011422)	ENSNLEG00000026544	ENSNLEG00000034552	ENSNLEG00000031576	ENSNLEG00000032966	PIAS2 (ENSNLEG00000011351) ##29	ST8SIA5 (ENSNLEG00000011343)	LOXHD1 (ENSNLEG00000011276)
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788	ENSGT00390000007354
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153499.a ##22
Black snub-nosed monkey	MODERN SPECIES	1933																SMAD2 (ENSRBIG00000029958) ##22
Golden snub-nosed monkey	MODERN SPECIES	3205																SMAD2 (ENSRROG00000035568) ##22
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788	ENSGT00390000007354
Vervet Monkey	MODERN SPECIES	9	MAPK4 (ENSCSAG00000018078)	ENSCSAG00000018568	SKA1 (ENSCSAG00000018076)	CXXC1 (ENSCSAG00000018072)	MBD1 (ENSCSAG00000018070)	CFAP53 (ENSCSAG00000018065)	MYO5B (ENSCSAG00000018060)	ACAA2 (ENSCSAG00000018054)	LIPG (ENSCSAG00000018043)	C18orf32 (ENSCSAG00000018029)	DYM (ENSCSAG00000018028)	ENSCSAG00000018569	SMAD7 (ENSCSAG00000018024)	CTIF (ENSCSAG00000018021)	ZBTB7C (ENSCSAG00000018018)	SMAD2 (ENSCSAG00000018016) ##22	SKOR2 (ENSCSAG00000018012)	IER3IP1 (ENSCSAG00000018009)	HDHD2 (ENSCSAG00000018007)	KATNAL2 (ENSCSAG00000018001)	ELOA2 (ENSCSAG00000018570)	PIAS2 (ENSCSAG00000017995) ##29	ST8SIA5 (ENSCSAG00000017993)	LOXHD1 (ENSCSAG00000017984)	RNF165 (ENSCSAG00000017974)	C18orf25 (ENSCSAG00000017972)	HAUS1 (ENSCSAG00000017970)	ATP5F1A (ENSCSAG00000017968)	PSTPIP2 (ENSCSAG00000017965)	EPG5 (ENSCSAG00000017960)	SIGLEC15 (ENSCSAG00000017954)
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788	ENSGT00390000007354
Macaca	ANCESTRAL SPECIES	22	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00440000033919.b	ENSGT00940000158788	ENSGT00390000007354
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00940000155478.r	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.b.a.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.a.b.b	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00940000158788	ENSGT00390000007354
Rhesus	MODERN SPECIES	9	CXXC1 (ENSMMUG00000009051)	MBD1 (ENSMMUG00000009050)	ENSMMUG00000064957	ENSMMUG00000052620	MYO5B (ENSMMUG00000003041)	ENSMMUG00000064909	ACAA2 (ENSMMUG00000003040)	LIPG (ENSMMUG00000019054)	ENSMMUG00000038584	ENSMMUG00000064858	RPL17 (ENSMMUG00000018837)	DYM (ENSMMUG00000001760)	SMAD7 (ENSMMUG00000056276)	CTIF (ENSMMUG00000020898)	ZBTB7C (ENSMMUG00000015704)	SMAD2 (ENSMMUG00000007816) ##22	ENSMMUG00000050569	SKOR2 (ENSMMUG00000048459)	IER3IP1 (ENSMMUG00000059289)	HDHD2 (ENSMMUG00000010999)	KATNAL2 (ENSMMUG00000015952)	ELOA2 (ENSMMUG00000044172)	PIAS2 (ENSMMUG00000004498) ##29	ENSMMUG00000050406	ST8SIA5 (ENSMMUG00000002742)	LOXHD1 (ENSMMUG00000017246)	RNF165 (ENSMMUG00000017243)	C18H18orf25 (ENSMMUG00000011473)	ENSMMUG00000056307	HAUS1 (ENSMMUG00000003124)	ATP5F1A (ENSMMUG00000003570)
Crab-eating macaque	MODERN SPECIES	9	ENSMFAG00000052720	LIPG (ENSMFAG00000038227)	ENSMFAG00000036042	ENSMFAG00000057888	RPL17 (ENSMFAG00000042744)	C18orf32 (ENSMFAG00000030546)	DYM (ENSMFAG00000031987)	ENSMFAG00000065559	ENSMFAG00000064429	SMAD7 (ENSMFAG00000042998)	ENSMFAG00000061902	CTIF (ENSMFAG00000037903)	ENSMFAG00000052298	ENSMFAG00000058784	ZBTB7C (ENSMFAG00000031667)	SMAD2 (ENSMFAG00000045652) ##22	ENSMFAG00000063952	IER3IP1 (ENSMFAG00000060309)	HDHD2 (ENSMFAG00000012951)	KATNAL2 (ENSMFAG00000029779)	ENSMFAG00000031677	ENSMFAG00000031695	PIAS2 (ENSMFAG00000031982) ##29	ENSMFAG00000050857	ST8SIA5 (ENSMFAG00000035970)	LOXHD1 (ENSMFAG00000037181)	RNF165 (ENSMFAG00000000616)	C18orf25 (ENSMFAG00000042249)	ENSMFAG00000052445	HAUS1 (ENSMFAG00000043557)	ENSMFAG00000049075
Pig-tailed macaque	MODERN SPECIES	155	SKA1 (ENSMNEG00000029687)	CXXC1 (ENSMNEG00000028715)	MBD1 (ENSMNEG00000038822)	CFAP53 (ENSMNEG00000015915)	MYO5B (ENSMNEG00000033529)	ACAA2 (ENSMNEG00000037789)	LIPG (ENSMNEG00000043610)	ENSMNEG00000035945	C18orf32 (ENSMNEG00000037414)	DYM (ENSMNEG00000030545)	SMAD7 (ENSMNEG00000039694)	CTIF (ENSMNEG00000039395)	ENSMNEG00000045230	ENSMNEG00000034460	ZBTB7C (ENSMNEG00000031886)	SMAD2 (ENSMNEG00000037330) ##22	ENSMNEG00000038031	IER3IP1 (ENSMNEG00000030543)	ENSMNEG00000038574	KATNAL2 (ENSMNEG00000029817)	ENSMNEG00000040070
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Cercopithecinae_d	ANCESTRAL SPECIES	40	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167.g	ENSGT00390000006029	ENSGT00550000074846.i	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Sooty mangabey	MODERN SPECIES	190	MBD1 (ENSCATG00000029959)	CFAP53 (ENSCATG00000026928)	MYO5B (ENSCATG00000038137)	ACAA2 (ENSCATG00000031450)	LIPG (ENSCATG00000033603)	ENSCATG00000043658	ENSCATG00000037257	ENSCATG00000018328	DYM (ENSCATG00000031272)	ENSCATG00000037245	SMAD7 (ENSCATG00000037681)	CTIF (ENSCATG00000038134)	ENSCATG00000045052	ENSCATG00000005038	ZBTB7C (ENSCATG00000044413)	SMAD2 (ENSCATG00000003842) ##22	SKOR2 (ENSCATG00000035815)	IER3IP1 (ENSCATG00000035811)	HDHD2 (ENSCATG00000035277)	KATNAL2 (ENSCATG00000037094)	ELOA2 (ENSCATG00000032113)	PIAS2 (ENSCATG00000034031) ##29	ST8SIA5 (ENSCATG00000030338)	LOXHD1 (ENSCATG00000036618)	RNF165 (ENSCATG00000037696)	C18orf25 (ENSCATG00000039068)	HAUS1 (ENSCATG00000025348)	ATP5F1A (ENSCATG00000025898)	PSTPIP2 (ENSCATG00000033892)	EPG5 (ENSCATG00000038496)	SIGLEC15 (ENSCATG00000043629)
Drill	MODERN SPECIES	1607	SKA1 (ENSMLEG00000030498)	CXXC1 (ENSMLEG00000032181)	MBD1 (ENSMLEG00000043121)	CFAP53 (ENSMLEG00000010151)	MYO5B (ENSMLEG00000030497)	ACAA2 (ENSMLEG00000035935)	LIPG (ENSMLEG00000028146)	RPL17 (ENSMLEG00000041470)	C18orf32 (ENSMLEG00000042407)	DYM (ENSMLEG00000036447)	ENSMLEG00000038861	CTIF (ENSMLEG00000041132)	ENSMLEG00000037738	ENSMLEG00000038973	ZBTB7C (ENSMLEG00000034896)	SMAD2 (ENSMLEG00000037596) ##22	ENSMLEG00000040989
Olive baboon	MODERN SPECIES	10	MRO (ENSPANG00000011894)	MAPK4 (ENSPANG00000009483)	SKA1 (ENSPANG00000030336)	CXXC1 (ENSPANG00000009435)	MBD1 (ENSPANG00000010867)	MYO5B (ENSPANG00000022089)	ACAA2 (ENSPANG00000002878)	LIPG (ENSPANG00000024235)	ENSPANG00000031295	C18orf32 (ENSPANG00000040941)	ENSPANG00000037588	ENSPANG00000046129	SMAD7 (ENSPANG00000025519)	CTIF (ENSPANG00000017087)	ZBTB7C (ENSPANG00000016942)	SMAD2 (ENSPANG00000025520) ##22	SKOR2 (ENSPANG00000017535)	IER3IP1 (ENSPANG00000041314)	HDHD2 (ENSPANG00000010312)	ELOA2 (ENSPANG00000049945)	KATNAL2 (ENSPANG00000017088)	PIAS2 (ENSPANG00000016213) ##29	ST8SIA5 (ENSPANG00000024947)	LOXHD1 (ENSPANG00000025288)	RNF165 (ENSPANG00000025287)	C18orf25 (ENSPANG00000006488)	HAUS1 (ENSPANG00000029808)	ATP5F1A (ENSPANG00000007341)	PSTPIP2 (ENSPANG00000019094)	EPG5 (ENSPANG00000009665)	SIGLEC15 (ENSPANG00000013868)
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Suina	ANCESTRAL SPECIES	12	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	123					ACAA2 (ENSCWAG00000018572)	ENSCWAG00000018602	LIPG (ENSCWAG00000018628)	ENSCWAG00000018703	C18orf32 (ENSCWAG00000007861)	DYM (ENSCWAG00000007926)	ENSCWAG00000008076	ENSCWAG00000008125	SMAD7 (ENSCWAG00000008146)	CTIF (ENSCWAG00000008248)	ZBTB7C (ENSCWAG00000008442)	ENSCWAG00000008490 ##22
Chacoan peccary	MODERN SPECIES	91																ENSCWAG00000020821 ##22	ENSCWAG00000020804	CMKLR2 (ENSCWAG00000020796)	EEF1B2 (ENSCWAG00000020782)	NDUFS1 (ENSCWAG00000020647)	ENSCWAG00000020619	INO80D (ENSCWAG00000020612)	NRP2 (ENSCWAG00000020581)	PARD3B (ENSCWAG00000020460)	ICOS (ENSCWAG00000020408)	CTLA4 (ENSCWAG00000020380)	CD28 (ENSCWAG00000020352)	RAPH1 (ENSCWAG00000018090)	ABI2 (ENSCWAG00000017671)	CYP20A1 (ENSCWAG00000017608)	NBEAL1 (ENSCWAG00000017563)
Pig	MODERN SPECIES		MBD1 (ENSSSCG00000004516)	CFAP53 (ENSSSCG00000055973)	ENSSSCG00000041158	ENSSSCG00000061513	ENSSSCG00000045942	ENSSSCG00000049462	MYO5B (ENSSSCG00000004511)	ACAA2 (ENSSSCG00000004510)	LIPG (ENSSSCG00000004509)	ENSSSCG00000035007	C18orf32 (ENSSSCG00000034415)	DYM (ENSSSCG00000004508)	SMAD7 (ENSSSCG00000004507)	CTIF (ENSSSCG00000004506)	ZBTB7C (ENSSSCG00000028076)	SMAD2 (ENSSSCG00000004505) ##22	SKOR2 (ENSSSCG00000005767)	ENSSSCG00000039669	IER3IP1 (ENSSSCG00000060420)	HDHD2 (ENSSSCG00000005771)	KATNAL2 (ENSSSCG00000022643)	PIAS2 (ENSSSCG00000034730) ##29	ST8SIA5 (ENSSSCG00000032053)	LOXHD1 (ENSSSCG00000004503)	RNF165 (ENSSSCG00000004502)	C18orf25 (ENSSSCG00000004500)	HAUS1 (ENSSSCG00000004498)	ATP5F1A (ENSSSCG00000004499)	PSTPIP2 (ENSSSCG00000060601)	EPG5 (ENSSSCG00000021072)	SIGLEC15 (ENSSSCG00000004493)
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Camelidae	ANCESTRAL SPECIES	53	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b ##29	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a	ENSGT00390000018729.a.b
Arabian camel	MODERN SPECIES	23	SKA1 (ENSCDRG00005009696)	CXXC1 (ENSCDRG00005009892)	MBD1 (ENSCDRG00005010072)	CFAP53 (ENSCDRG00005010332)	MYO5B (ENSCDRG00005010461)	ACAA2 (ENSCDRG00005010799)	ENSCDRG00005010930	LIPG (ENSCDRG00005010970)	RPL17 (ENSCDRG00005011453)	C18orf32 (ENSCDRG00005011639)	DYM (ENSCDRG00005011719)	ENSCDRG00005012031	ENSCDRG00005012050	CTIF (ENSCDRG00005012119)	ZBTB7C (ENSCDRG00005012395)	SMAD2 (ENSCDRG00005012465) ##22	IER3IP1 (ENSCDRG00005012846)	HDHD2 (ENSCDRG00005012918)	KATNAL2 (ENSCDRG00005012992)	ENSCDRG00005013155	PIAS2 (ENSCDRG00005013189) ##29	LOXHD1 (ENSCDRG00005013391)	ENSCDRG00005014972	ENSCDRG00005015011	C18orf25 (ENSCDRG00005015062)	HAUS1 (ENSCDRG00005015141)	ATP5F1A (ENSCDRG00005015287)	PSTPIP2 (ENSCDRG00005015365)	EPG5 (ENSCDRG00005015455)	SIGLEC15 (ENSCDRG00005015557)	SLC14A1 (ENSCDRG00005015615)
Alpaca	MODERN SPECIES	2113																SMAD2 (ENSVPAG00000007781) ##22
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Cetacea	ANCESTRAL SPECIES	11	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.i	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Dolphin	MODERN SPECIES	4256																SMAD2 (ENSTTRG00000002628) ##22
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.i	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00390000011654.i	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000169764	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00390000008808.k.a.a	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Narwhal	MODERN SPECIES	295	ME2 (ENSMMNG00015000602)	MRO (ENSMMNG00015000680)	ENSMMNG00015000706	ENSMMNG00015000736	ACAA2 (ENSMMNG00015000776)	ENSMMNG00015000802	LIPG (ENSMMNG00015000826)	ENSMMNG00015000862	ENSMMNG00015000947	DYM (ENSMMNG00015001014)	ENSMMNG00015001110	SMAD7 (ENSMMNG00015001136)	ENSMMNG00015001156	CTIF (ENSMMNG00015001193)	ZBTB7C (ENSMMNG00015001274)	SMAD2 (ENSMMNG00015001331) ##22	SKOR2 (ENSMMNG00015001428)	ENSMMNG00015001451	HDHD2 (ENSMMNG00015001468)	KATNAL2 (ENSMMNG00015001513)	ENSMMNG00015001565	PIAS2 (ENSMMNG00015001607) ##29	ST8SIA5 (ENSMMNG00015001685)	LOXHD1 (ENSMMNG00015002006)	RNF165 (ENSMMNG00015002686)	C18orf25 (ENSMMNG00015002704)	HAUS1 (ENSMMNG00015002726)	ATP5F1A (ENSMMNG00015002755)	PSTPIP2 (ENSMMNG00015002786)	EPG5 (ENSMMNG00015002843)	SIGLEC15 (ENSMMNG00015002905)
Beluga whale	MODERN SPECIES	25	ENSDLEG00000004437	CXXC1 (ENSDLEG00000004445)	MBD1 (ENSDLEG00000004462)	CFAP53 (ENSDLEG00000004488)	MYO5B (ENSDLEG00000004517)	ACAA2 (ENSDLEG00000004552)	ENSDLEG00000004561	LIPG (ENSDLEG00000004571)	ENSDLEG00000004581	CUNH18orf32 (ENSDLEG00000004598)	DYM (ENSDLEG00000004613)	SMAD7 (ENSDLEG00000004642)	ENSDLEG00000004646	CTIF (ENSDLEG00000004651)	ZBTB7C (ENSDLEG00000006486)	SMAD2 (ENSDLEG00000006490) ##22
Vaquita	MODERN SPECIES	5	SKA1 (ENSPSNG00000008361)	CXXC1 (ENSPSNG00000008435)	MBD1 (ENSPSNG00000008606)	CFAP53 (ENSPSNG00000008868)	MYO5B (ENSPSNG00000008965)	ENSPSNG00000009066	ACAA2 (ENSPSNG00000009112)	LIPG (ENSPSNG00000009216)	ENSPSNG00000009327	ENSPSNG00000009445	DYM (ENSPSNG00000009515)	ENSPSNG00000009632	ENSPSNG00000009707	CTIF (ENSPSNG00000009732)	ZBTB7C (ENSPSNG00000009825)	SMAD2 (ENSPSNG00000009901) ##22	SKOR2 (ENSPSNG00000010229)	IER3IP1 (ENSPSNG00000010315)	HDHD2 (ENSPSNG00000010382)	KATNAL2 (ENSPSNG00000010440)	ENSPSNG00000010683	PIAS2 (ENSPSNG00000010743) ##29	ST8SIA5 (ENSPSNG00000010902)	LOXHD1 (ENSPSNG00000011419)	RNF165 (ENSPSNG00000013772)	C18orf25 (ENSPSNG00000013977)	HAUS1 (ENSPSNG00000014089)	ATP5F1A (ENSPSNG00000014199)	PSTPIP2 (ENSPSNG00000014312)	EPG5 (ENSPSNG00000014417)	SIGLEC15 (ENSPSNG00000014516)
Sperm whale	MODERN SPECIES	10	MRO (ENSPCTG00005013153)	ENSPCTG00005013095	SKA1 (ENSPCTG00005012981)	CXXC1 (ENSPCTG00005012649)	MBD1 (ENSPCTG00005012098)	CFAP53 (ENSPCTG00005012030)	ENSPCTG00005010783	ENSPCTG00005010644	ACAA2 (ENSPCTG00005010500)	LIPG (ENSPCTG00005010413)	ENSPCTG00005010250	ENSPCTG00005010201	DYM (ENSPCTG00005009929)	CTIF (ENSPCTG00005009802)	ZBTB7C (ENSPCTG00005009728)	SMAD2 (ENSPCTG00005009494) ##22	SKOR2 (ENSPCTG00005009374)	IER3IP1 (ENSPCTG00005009339)	HDHD2 (ENSPCTG00005009305)	KATNAL2 (ENSPCTG00005009038)	ENSPCTG00005008984	PIAS2 (ENSPCTG00005008808) ##29	ENSPCTG00005008636	ST8SIA5 (ENSPCTG00005008579)	ENSPCTG00005008447	RNF165 (ENSPCTG00005008364)	C19H18orf25 (ENSPCTG00005008306)	HAUS1 (ENSPCTG00005008172)	ATP5F1A (ENSPCTG00005008127)	PSTPIP2 (ENSPCTG00005008088)	EPG5 (ENSPCTG00005008044)
Blue whale	MODERN SPECIES	5	ENSBMSG00010009805	ENSBMSG00010009796	SKA1 (ENSBMSG00010009775)	CXXC1 (ENSBMSG00010009732)	MBD1 (ENSBMSG00010009608)	CFAP53 (ENSBMSG00010009568)	MYO5B (ENSBMSG00010009537)	ACAA2 (ENSBMSG00010021576)	LIPG (ENSBMSG00010021562)	ENSBMSG00010021535	C18orf32 (ENSBMSG00010021530)	DYM (ENSBMSG00010021517)	SMAD7 (ENSBMSG00010021494)	CTIF (ENSBMSG00010021461)	ZBTB7C (ENSBMSG00010021442)	SMAD2 (ENSBMSG00010021413) ##22	SKOR2 (ENSBMSG00010021387)	ENSBMSG00010021377	IER3IP1 (ENSBMSG00010021374)	HDHD2 (ENSBMSG00010021363)	ENSBMSG00010021354	KATNAL2 (ENSBMSG00010021337)	ENSBMSG00010021325	PIAS2 (ENSBMSG00010021288) ##29	ST8SIA5 (ENSBMSG00010021215)	LOXHD1 (ENSBMSG00010020792)	RNF165 (ENSBMSG00010020628)	C18orf25 (ENSBMSG00010020596)	HAUS1 (ENSBMSG00010020557)	ATP5F1A (ENSBMSG00010020528)	ENSBMSG00010020513
Pecora	ANCESTRAL SPECIES	26	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Yarkand deer	MODERN SPECIES	19	MAPK4 (ENSCHYG00000026191)	SKA1 (ENSCHYG00000026215)	CXXC1 (ENSCHYG00000026245)	ENSCHYG00000026350	MYO5B (ENSCHYG00000026574)	ACAA2 (ENSCHYG00000026661)	LIPG (ENSCHYG00000026718)	ENSCHYG00000026734	C18orf32 (ENSCHYG00000026758)	DYM (ENSCHYG00000026793)	SMAD7 (ENSCHYG00000026860)	CTIF (ENSCHYG00000026870)	ENSCHYG00000026884	ZBTB7C (ENSCHYG00000009960)	ENSCHYG00000010021	SMAD2 (ENSCHYG00000010054) ##22	ENSCHYG00000010193	ENSCHYG00000010350	HDHD2 (ENSCHYG00000010250)	KATNAL2 (ENSCHYG00000010401)	PIAS2 (ENSCHYG00000010761) ##29	ENSCHYG00000010966	ST8SIA5 (ENSCHYG00000011028)	LOXHD1 (ENSCHYG00000011324)	ENSCHYG00000013406	ENSCHYG00000013803	HAUS1 (ENSCHYG00000013860)	ATP5F1A (ENSCHYG00000014052)	PSTPIP2 (ENSCHYG00000014255)	ENSCHYG00000014621	EPG5 (ENSCHYG00000014653)
Percora_a	ANCESTRAL SPECIES	28	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	132	ENSMMSG00000005937	SKA1 (ENSMMSG00000005964)	CXXC1 (ENSMMSG00000006036)	MBD1 (ENSMMSG00000006100)	CFAP53 (ENSMMSG00000006206)	MYO5B (ENSMMSG00000006238)	ENSMMSG00000006303	ACAA2 (ENSMMSG00000006348)	LIPG (ENSMMSG00000006397)	ENSMMSG00000006453	C18orf32 (ENSMMSG00000006526)	DYM (ENSMMSG00000006548)	SMAD7 (ENSMMSG00000006627)	CTIF (ENSMMSG00000006694)	ZBTB7C (ENSMMSG00000006737)	ENSMMSG00000006765 ##22	SKOR2 (ENSMMSG00000006829)	IER3IP1 (ENSMMSG00000006915)	HDHD2 (ENSMMSG00000006946)	KATNAL2 (ENSMMSG00000006988)	ENSMMSG00000007106	PIAS2 (ENSMMSG00000007137) ##29	ST8SIA5 (ENSMMSG00000007341)	LOXHD1 (ENSMMSG00000007604)	RNF165 (ENSMMSG00000011227)	C18orf25 (ENSMMSG00000011290)	HAUS1 (ENSMMSG00000011347)	ATP5F1A (ENSMMSG00000011430)	ENSMMSG00000011466	PSTPIP2 (ENSMMSG00000011495)	EPG5 (ENSMMSG00000011583)
Siberian musk deer	MODERN SPECIES	1271	METTL14 (ENSMMSG00000024284)	SEC24D (ENSMMSG00000024289)	SYNPO2 (ENSMMSG00000017112)	MYOZ2 (ENSMMSG00000017140)	USP53 (ENSMMSG00000017172)	ENSMMSG00000017213	FABP2 (ENSMMSG00000017233)	PDE5A (ENSMMSG00000017279)	ENSMMSG00000017396	MAD2L1 (ENSMMSG00000017450)	ENSMMSG00000017498	NDNF (ENSMMSG00000017569)	TNIP3 (ENSMMSG00000017595)	QRFPR (ENSMMSG00000017721)	ANXA5 (ENSMMSG00000017820)	ENSMMSG00000018019 ##22	SMIM43 (ENSMMSG00000018134)	EXOSC9 (ENSMMSG00000018147)	CCNA2 (ENSMMSG00000018221)	BBS7 (ENSMMSG00000018260)	ENSMMSG00000018339	NPY1R (ENSMMSG00000018359)	NPY5R (ENSMMSG00000018382)	TKTL2 (ENSMMSG00000018406)	TMA16 (ENSMMSG00000018436)	MARCHF1 (ENSMMSG00000018482)	ENSMMSG00000018599
Bovidae	ANCESTRAL SPECIES	28	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab	ENSGT00940000158788	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000161642.b	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.m ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab.a	ENSGT00940000158788	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354
Rambouillet Sheep	MODERN SPECIES	15	ME2 (ENSOARG00020015563)	MRO (ENSOARG00020015446)	MAPK4 (ENSOARG00020015369)	SKA1 (ENSOARG00020015277)	ENSOARG00020013652	MYO5B (ENSOARG00020012171)	ACAA2 (ENSOARG00020011796)	LIPG (ENSOARG00020011622)	RPL17 (ENSOARG00020011339)	C18orf32 (ENSOARG00020011289)	ENSOARG00020011257	DYM (ENSOARG00020011069)	SMAD7 (ENSOARG00020010974)	CTIF (ENSOARG00020010822)	ZBTB7C (ENSOARG00020010706)	SMAD2 (ENSOARG00020010458) ##22	SKOR2 (ENSOARG00020010308)	IER3IP1 (ENSOARG00020010237)	HDHD2 (ENSOARG00020010165)	ENSOARG00020010055	KATNAL2 (ENSOARG00020009912)	PIAS2 (ENSOARG00020009642) ##29	ST8SIA5 (ENSOARG00020009312)	LOXHD1 (ENSOARG00020006581)	RNF165 (ENSOARG00020006346)	C18orf25 (ENSOARG00020025062)	HAUS1 (ENSOARG00020025030)	ATP5F1A (ENSOARG00020025008)	PSTPIP2 (ENSOARG00020024936)	ENSOARG00020024920	EPG5 (ENSOARG00020024844)
Goat	MODERN SPECIES	16	SKA1 (ENSCHIG00000014694)	CXXC1 (ENSCHIG00000014305)	MBD1 (ENSCHIG00000021134)	CFAP53 (ENSCHIG00000001175)	MYO5B (ENSCHIG00000016585)	ACAA2 (ENSCHIG00000024466)	ENSCHIG00000003894	LIPG (ENSCHIG00000015994)	ENSCHIG00000011677	C18orf32 (ENSCHIG00000021354)	ENSCHIG00000004940	DYM (ENSCHIG00000001838)	SMAD7 (ENSCHIG00000019461)	CTIF (ENSCHIG00000014455)	ZBTB7C (ENSCHIG00000001635)	SMAD2 (ENSCHIG00000020206) ##22	SKOR2 (ENSCHIG00000011642)	IER3IP1 (ENSCHIG00000020552)	HDHD2 (ENSCHIG00000015973)	KATNAL2 (ENSCHIG00000021217)	ENSCHIG00000014561 ##29	ST8SIA5 (ENSCHIG00000021775)	LOXHD1 (ENSCHIG00000019780)	RNF165 (ENSCHIG00000009622)	C18orf25 (ENSCHIG00000014294)	HAUS1 (ENSCHIG00000027208)	ENSCHIG00000014708	PSTPIP2 (ENSCHIG00000019291)	EPG5 (ENSCHIG00000003358)	SIGLEC15 (ENSCHIG00000008764)	SLC14A1 (ENSCHIG00000006085)
Bovinae	ANCESTRAL SPECIES	28	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab	ENSGT00940000158788	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354	ENSGT01080000257333.E.o.a
American bison	MODERN SPECIES	3076											DYM (ENSBBBG00000010404)	SMAD7 (ENSBBBG00000010410)	CTIF (ENSBBBG00000010421)	ENSBBBG00000010424	ZBTB7C (ENSBBBG00000010443)	SMAD2 (ENSBBBG00000010465) ##22	SKOR2 (ENSBBBG00000010476)	IER3IP1 (ENSBBBG00000010485)	HDHD2 (ENSBBBG00000010488)	KATNAL2 (ENSBBBG00000010508)	PIAS2 (ENSBBBG00000010545) ##29
Bos	ANCESTRAL SPECIES	29	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.j	ENSGT00950000183010.a.b.a.b.a	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab	ENSGT00940000158788	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Bos_a	ANCESTRAL SPECIES	28	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.j	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab	ENSGT00940000158788	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354	ENSGT01080000257333.E.o.a
Wild yak	MODERN SPECIES	1283															ZBTB7C (ENSBMUG00000007371)	SMAD2 (ENSBMUG00000007345) ##22
Domestic yak	MODERN SPECIES	13	MAPK4 (ENSBGRG00000024208)	SKA1 (ENSBGRG00000024086)	CXXC1 (ENSBGRG00000023942)	MBD1 (ENSBGRG00000023527)	ENSBGRG00000023396	ENSBGRG00000023371	ACAA2 (ENSBGRG00000023212)	LIPG (ENSBGRG00000023098)	ENSBGRG00000022965	ENSBGRG00000022927	DYM (ENSBGRG00000022704)	SMAD7 (ENSBGRG00000022643)	ENSBGRG00000022591	CTIF (ENSBGRG00000022473)	ZBTB7C (ENSBGRG00000022372)	SMAD2 (ENSBGRG00000022238) ##22	ENSBGRG00000022203	IER3IP1 (ENSBGRG00000022154)	HDHD2 (ENSBGRG00000022037)	KATNAL2 (ENSBGRG00000021942)	ENSBGRG00000021911	PIAS2 (ENSBGRG00000021507) ##29	ST8SIA5 (ENSBGRG00000021274)	LOXHD1 (ENSBGRG00000019547)	RNF165 (ENSBGRG00000019400)	C18orf25 (ENSBGRG00000019304)	HAUS1 (ENSBGRG00000019042)	ATP5F1A (ENSBGRG00000018791)	PSTPIP2 (ENSBGRG00000018564)	EPG5 (ENSBGRG00000018124)	SIGLEC15 (ENSBGRG00000018017)
Bos_b	ANCESTRAL SPECIES	34	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.a	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.ab	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a	ENSGT00390000018729.a.a
Cow	MODERN SPECIES	16	ME2 (ENSBTAG00000016269)	MRO (ENSBTAG00000047635)	MAPK4 (ENSBTAG00000009907)	SKA1 (ENSBTAG00000018216)	CXXC1 (ENSBTAG00000021884)	MBD1 (ENSBTAG00000003801)	MYO5B (ENSBTAG00000019455)	ACAA2 (ENSBTAG00000002863)	LIPG (ENSBTAG00000048916)	RPL17 (ENSBTAG00000022902)	C24H18orf32 (ENSBTAG00000021334)	DYM (ENSBTAG00000000024)	SMAD7 (ENSBTAG00000012441)	CTIF (ENSBTAG00000018901)	ZBTB7C (ENSBTAG00000013306)	SMAD2 (ENSBTAG00000039916) ##22	SKOR2 (ENSBTAG00000032962)	IER3IP1 (ENSBTAG00000032961)	HDHD2 (ENSBTAG00000011893)	KATNAL2 (ENSBTAG00000019331)	ENSBTAG00000047547	PIAS2 (ENSBTAG00000007833) ##29	ST8SIA5 (ENSBTAG00000001770)	LOXHD1 (ENSBTAG00000015210)	ENSBTAG00000048422	RNF165 (ENSBTAG00000001128)	C24H18orf25 (ENSBTAG00000032964)	HAUS1 (ENSBTAG00000002512)	ATP5F1A (ENSBTAG00000002507)	PSTPIP2 (ENSBTAG00000002624)	EPG5 (ENSBTAG00000012067)
Hybrid Bos Indicus	MODERN SPECIES	16	ME2 (ENSBIXG00005025823)	MRO (ENSBIXG00005025968)	MAPK4 (ENSBIXG00005025994)	SKA1 (ENSBIXG00005004443)	CXXC1 (ENSBIXG00005026115)	ENSBIXG00005026615	MYO5B (ENSBIXG00005026770)	ACAA2 (ENSBIXG00005026872)	LIPG (ENSBIXG00005004622)	ENSBIXG00005007771	ENSBIXG00005027155	DYM (ENSBIXG00005027220)	SMAD7 (ENSBIXG00005004711)	CTIF (ENSBIXG00005007777)	ZBTB7C (ENSBIXG00005027504)	SMAD2 (ENSBIXG00005027591) ##22	SKOR2 (ENSBIXG00005004756)	IER3IP1 (ENSBIXG00005027693)	ENSBIXG00005027700	HDHD2 (ENSBIXG00005027742)	KATNAL2 (ENSBIXG00005004778)	ENSBIXG00005006537	PIAS2 (ENSBIXG00005027955) ##29	ST8SIA5 (ENSBIXG00005028065)	LOXHD1 (ENSBIXG00005028849)	ENSBIXG00005005062	RNF165 (ENSBIXG00005002180)	C18orf25 (ENSBIXG00005002109)	ENSBIXG00005005126	ATP5F1A (ENSBIXG00005002010)	PSTPIP2 (ENSBIXG00005029098)
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00950000183010.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b
Microbat	MODERN SPECIES	953	ME2 (ENSMLUG00000013932)	MRO (ENSMLUG00000014572)	MAPK4 (ENSMLUG00000014569)	SKA1 (ENSMLUG00000013388)	CXXC1 (ENSMLUG00000025328)	MBD1 (ENSMLUG00000008286)	ENSMLUG00000016723	MYO5B (ENSMLUG00000016701)	ACAA2 (ENSMLUG00000022960)	LIPG (ENSMLUG00000004113)	ENSMLUG00000029264	DYM (ENSMLUG00000003419)	SMAD7 (ENSMLUG00000016080)	CTIF (ENSMLUG00000003025)	ZBTB7C (ENSMLUG00000030000)	SMAD2 (ENSMLUG00000008857) ##22	ENSMLUG00000028440	ENSMLUG00000028696	HDHD2 (ENSMLUG00000004087)	KATNAL2 (ENSMLUG00000004078)	ENSMLUG00000008902 ##29	ST8SIA5 (ENSMLUG00000008890)	LOXHD1 (ENSMLUG00000008832)	RNF165 (ENSMLUG00000008813)	C18orf25 (ENSMLUG00000008806)	HAUS1 (ENSMLUG00000009879)	ATP5F1A (ENSMLUG00000009856)	PSTPIP2 (ENSMLUG00000009831)	EPG5 (ENSMLUG00000009791)	SIGLEC15 (ENSMLUG00000004894)	SLC14A1 (ENSMLUG00000004885)
Greater horseshoe bat	MODERN SPECIES	10	ME2 (ENSRFEG00010016375)	MRO (ENSRFEG00010016266)	MAPK4 (ENSRFEG00010016193)	SKA1 (ENSRFEG00010015982)	CXXC1 (ENSRFEG00010015320)	MBD1 (ENSRFEG00010015077)	CFAP53 (ENSRFEG00010015022)	MYO5B (ENSRFEG00010014892)	ACAA2 (ENSRFEG00010014660)	LIPG (ENSRFEG00010014542)	C18orf32 (ENSRFEG00010014487)	DYM (ENSRFEG00010014390)	SMAD7 (ENSRFEG00010014226)	CTIF (ENSRFEG00010014128)	ZBTB7C (ENSRFEG00010014086)	SMAD2 (ENSRFEG00010013927) ##22	SKOR2 (ENSRFEG00010013793)	IER3IP1 (ENSRFEG00010013708)	HDHD2 (ENSRFEG00010013605)	ENSRFEG00010013519	KATNAL2 (ENSRFEG00010013030)	PIAS2 (ENSRFEG00010012942) ##29	ENSRFEG00010012921	ST8SIA5 (ENSRFEG00010012732)	LOXHD1 (ENSRFEG00010010653)	RNF165 (ENSRFEG00010010311)	C18orf25 (ENSRFEG00010010226)	HAUS1 (ENSRFEG00010010163)	ATP5F1A (ENSRFEG00010010087)	PSTPIP2 (ENSRFEG00010010012)	EPG5 (ENSRFEG00010009969)
Megabat	MODERN SPECIES	2438															ZBTB7C (ENSPVAG00000007762)	SMAD2 (ENSPVAG00000007760) ##22
Equus	ANCESTRAL SPECIES	36	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Donkey	MODERN SPECIES	27	ME2 (ENSEASG00005003813)	MRO (ENSEASG00005003818)	MAPK4 (ENSEASG00005003821)	SKA1 (ENSEASG00005033486)	CXXC1 (ENSEASG00005003826)	ENSEASG00005003857	MYO5B (ENSEASG00005004025)	ACAA2 (ENSEASG00005005395)	LIPG (ENSEASG00005005399)	ENSEASG00005025626	ENSEASG00005031152	DYM (ENSEASG00005015845)	SMAD7 (ENSEASG00005016092)	CTIF (ENSEASG00005016094)	ZBTB7C (ENSEASG00005016097)	SMAD2 (ENSEASG00005016099) ##22	SKOR2 (ENSEASG00005016101)	IER3IP1 (ENSEASG00005037358)	HDHD2 (ENSEASG00005016104)	ENSEASG00005028481	KATNAL2 (ENSEASG00005016106)	ENSEASG00005016132	PIAS2 (ENSEASG00005016126) ##29	ST8SIA5 (ENSEASG00005016136)	LOXHD1 (ENSEASG00005016151)	RNF165 (ENSEASG00005016163)	C18orf25 (ENSEASG00005016164)	HAUS1 (ENSEASG00005016165)	ATP5F1A (ENSEASG00005016183)	PSTPIP2 (ENSEASG00005016428)	SIGLEC15 (ENSEASG00005034343)
Horse	MODERN SPECIES	29	MAPK4 (ENSECAG00000023749)	SKA1 (ENSECAG00000023484)	CXXC1 (ENSECAG00000017698)	MBD1 (ENSECAG00000011497)	CFAP53 (ENSECAG00000053670)	MYO5B (ENSECAG00000022515)	ACAA2 (ENSECAG00000019394)	ENSECAG00000059774	LIPG (ENSECAG00000015140)	ENSECAG00000011547	C18orf32 (ENSECAG00000046374)	DYM (ENSECAG00000001651)	SMAD7 (ENSECAG00000020583)	CTIF (ENSECAG00000020473)	ZBTB7C (ENSECAG00000020456)	SMAD2 (ENSECAG00000015132) ##22	SKOR2 (ENSECAG00000040113)	IER3IP1 (ENSECAG00000026829)	HDHD2 (ENSECAG00000012664)	ENSECAG00000010000	KATNAL2 (ENSECAG00000010207)	PIAS2 (ENSECAG00000002816) ##29	ST8SIA5 (ENSECAG00000023864)	LOXHD1 (ENSECAG00000022216)	RNF165 (ENSECAG00000021547)	ENSECAG00000031869	C18orf25 (ENSECAG00000020333)	HAUS1 (ENSECAG00000016553)	ATP5F1A (ENSECAG00000021561)	PSTPIP2 (ENSECAG00000019025)	EPG5 (ENSECAG00000002267)
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b
Felidae	ANCESTRAL SPECIES	24	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b	ENSGT00390000018729.a.a
Panthera	ANCESTRAL SPECIES	24	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.b	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000153201.j.n	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b	ENSGT00390000018729.a.a
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.b	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000153201.j.n	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b	ENSGT00390000018729.a.a
leopard	MODERN SPECIES	43	MAPK4 (ENSPPRG00000003118)	SKA1 (ENSPPRG00000002324)	CXXC1 (ENSPPRG00000001170)	MBD1 (ENSPPRG00000021387)	CFAP53 (ENSPPRG00000012971)	MYO5B (ENSPPRG00000012444)	ACAA2 (ENSPPRG00000009885)	LIPG (ENSPPRG00000009382)	ENSPPRG00000006166	ENSPPRG00000004942	DYM (ENSPPRG00000004872)	ENSPPRG00000003458	SMAD7 (ENSPPRG00000002686)	CTIF (ENSPPRG00000002265)	ZBTB7C (ENSPPRG00000001432)	SMAD2 (ENSPPRG00000000616) ##22	ENSPPRG00000000048	IER3IP1 (ENSPPRG00000022716)	HDHD2 (ENSPPRG00000022964)	KATNAL2 (ENSPPRG00000023079)	PIAS2 (ENSPPRG00000023399) ##29	ST8SIA5 (ENSPPRG00000018954)	LOXHD1 (ENSPPRG00000016773)	RNF165 (ENSPPRG00000006559)	C18orf25 (ENSPPRG00000005801)	HAUS1 (ENSPPRG00000004691)	ATP5F1A (ENSPPRG00000004018)	PSTPIP2 (ENSPPRG00000002553)	EPG5 (ENSPPRG00000000539)	SIGLEC15 (ENSPPRG00000000322)	SLC14A1 (ENSPPRG00000022676)
lion	MODERN SPECIES	12	ENSPLOG00000012947	SKA1 (ENSPLOG00000013016)	CXXC1 (ENSPLOG00000013121)	MBD1 (ENSPLOG00000013232)	CFAP53 (ENSPLOG00000013386)	MYO5B (ENSPLOG00000013501)	ACAA2 (ENSPLOG00000013846)	LIPG (ENSPLOG00000014024)	ENSPLOG00000014279	ENSPLOG00000014438	DYM (ENSPLOG00000014488)	ENSPLOG00000014599	SMAD7 (ENSPLOG00000014649)	CTIF (ENSPLOG00000014765)	ZBTB7C (ENSPLOG00000014833)	SMAD2 (ENSPLOG00000014910) ##22	SKOR2 (ENSPLOG00000015171)	IER3IP1 (ENSPLOG00000015259)	HDHD2 (ENSPLOG00000015310)	KATNAL2 (ENSPLOG00000015369)	PIAS2 (ENSPLOG00000015647) ##29	ST8SIA5 (ENSPLOG00000015755)	LOXHD1 (ENSPLOG00000016139)	RNF165 (ENSPLOG00000017833)	C18orf25 (ENSPLOG00000017933)	HAUS1 (ENSPLOG00000017982)	ATP5F1A (ENSPLOG00000018053)	PSTPIP2 (ENSPLOG00000018143)	EPG5 (ENSPLOG00000018247)	SIGLEC15 (ENSPLOG00000018426)	SLC14A1 (ENSPLOG00000018513)
Tiger	MODERN SPECIES	143	ENSPTIG00000015504	SKA1 (ENSPTIG00000015731)	CXXC1 (ENSPTIG00000017258)	MBD1 (ENSPTIG00000021231)	CFAP53 (ENSPTIG00000018895)	MYO5B (ENSPTIG00000019987)	ACAA2 (ENSPTIG00000021827)	LIPG (ENSPTIG00000000449)	ENSPTIG00000007691	C18orf32 (ENSPTIG00000009698)	DYM (ENSPTIG00000011072)	ENSPTIG00000012715	ENSPTIG00000013182	CTIF (ENSPTIG00000013761)	ENSPTIG00000014786	SMAD2 (ENSPTIG00000015931) ##22	ENSPTIG00000019038	IER3IP1 (ENSPTIG00000019219)	HDHD2 (ENSPTIG00000019534)	KATNAL2 (ENSPTIG00000019828)	PIAS2 (ENSPTIG00000020076) ##29	ST8SIA5 (ENSPTIG00000021493)	LOXHD1 (ENSPTIG00000003929)	ENSPTIG00000018660	C18orf25 (ENSPTIG00000018925)	HAUS1 (ENSPTIG00000020327)	ATP5F1A (ENSPTIG00000020666)	PSTPIP2 (ENSPTIG00000021622)	EPG5 (ENSPTIG00000021849)	SLC14A1 (ENSPTIG00000021937)	ENSPTIG00000004707
Cat	MODERN SPECIES	243	ELAC1 (ENSFCAG00000039876)	ME2 (ENSFCAG00000005659)	MRO (ENSFCAG00000030720)	MAPK4 (ENSFCAG00000012154)	SKA1 (ENSFCAG00000023341)	CXXC1 (ENSFCAG00000006135)	MBD1 (ENSFCAG00000015730)	MYO5B (ENSFCAG00000009880)	LIPG (ENSFCAG00000012354)	RPL17 (ENSFCAG00000011342)	ENSFCAG00000022684	DYM (ENSFCAG00000012954)	SMAD7 (ENSFCAG00000042475)	CTIF (ENSFCAG00000000664)	ZBTB7C (ENSFCAG00000030658)	SMAD2 (ENSFCAG00000013266) ##22	SKOR2 (ENSFCAG00000045761)	IER3IP1 (ENSFCAG00000032516)	HDHD2 (ENSFCAG00000002788)	KATNAL2 (ENSFCAG00000018778)	PIAS2 (ENSFCAG00000002787) ##29	ST8SIA5 (ENSFCAG00000002786)	LOXHD1 (ENSFCAG00000002785)	RNF165 (ENSFCAG00000002784)	CD3H18orf25 (ENSFCAG00000030676)	HAUS1 (ENSFCAG00000003729)	ATP5F1A (ENSFCAG00000025952)	PSTPIP2 (ENSFCAG00000029753)	EPG5 (ENSFCAG00000010674)	SIGLEC15 (ENSFCAG00000031358)	SLC14A1 (ENSFCAG00000025903)
Caniformia	ANCESTRAL SPECIES	9	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846.bb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846.bb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b
Ursidae	ANCESTRAL SPECIES	23	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT01030000240358	ENSGT00390000006029	ENSGT00550000074846.bb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT00940000167582
Ursus	ANCESTRAL SPECIES	25	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.d	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.bb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT00390000018729.a.a	ENSGT00390000018729.a.b	ENSGT00940000158784
American black bear	MODERN SPECIES	84															ZBTB7C (ENSUAMG00000020557)	SMAD2 (ENSUAMG00000020558) ##22	IER3IP1 (ENSUAMG00000020560)	ENSUAMG00000020561
Polar bear	MODERN SPECIES	96	ME2 (ENSUMAG00000003096)	MRO (ENSUMAG00000003055)	MAPK4 (ENSUMAG00000003042)	SKA1 (ENSUMAG00000003034)	CXXC1 (ENSUMAG00000003014)	MBD1 (ENSUMAG00000002947)	MYO5B (ENSUMAG00000002812)	ACAA2 (ENSUMAG00000002792)	LIPG (ENSUMAG00000002779)	ENSUMAG00000002766	C18orf32 (ENSUMAG00000002755)	DYM (ENSUMAG00000002750)	ENSUMAG00000002746	CTIF (ENSUMAG00000002735)	ZBTB7C (ENSUMAG00000002721)	SMAD2 (ENSUMAG00000002720) ##22	IER3IP1 (ENSUMAG00000002717)	HDHD2 (ENSUMAG00000002716)	KATNAL2 (ENSUMAG00000002674)	PIAS2 (ENSUMAG00000002661) ##29	ST8SIA5 (ENSUMAG00000002618)	LOXHD1 (ENSUMAG00000002413)	RNF165 (ENSUMAG00000002386)	C18orf25 (ENSUMAG00000002382)	HAUS1 (ENSUMAG00000002378)	ATP5F1A (ENSUMAG00000002375)	PSTPIP2 (ENSUMAG00000002367)	EPG5 (ENSUMAG00000002362)	SLC14A1 (ENSUMAG00000002359)	ENSUMAG00000002312	SETBP1 (ENSUMAG00000002294)
Giant Panda	MODERN SPECIES	5	ME2 (ENSAMEG00000002933)	MRO (ENSAMEG00000002971)	MAPK4 (ENSAMEG00000026715)	SKA1 (ENSAMEG00000000280)	CXXC1 (ENSAMEG00000000259)	MBD1 (ENSAMEG00000000238)	MYO5B (ENSAMEG00000009253)	ACAA2 (ENSAMEG00000009411)	LIPG (ENSAMEG00000009434)	RPL17 (ENSAMEG00000009498)	ENSAMEG00000027976	DYM (ENSAMEG00000006724)	SMAD7 (ENSAMEG00000031009)	CTIF (ENSAMEG00000029852)	ZBTB7C (ENSAMEG00000012857)	SMAD2 (ENSAMEG00000012816) ##22	ENSAMEG00000012815	IER3IP1 (ENSAMEG00000023574)	HDHD2 (ENSAMEG00000012799)	KATNAL2 (ENSAMEG00000012794)	PIAS2 (ENSAMEG00000012748) ##29	LOXHD1 (ENSAMEG00000012676)	RNF165 (ENSAMEG00000012667)	C18orf25 (ENSAMEG00000012662)	ENSAMEG00000025621	HAUS1 (ENSAMEG00000012644)	ATP5F1A (ENSAMEG00000012614)	PSTPIP2 (ENSAMEG00000012579)	EPG5 (ENSAMEG00000012534)	ENSAMEG00000027408	SLC14A1 (ENSAMEG00000012521)
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.bb.b	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b	ENSGT00390000018729.a.a
American mink	MODERN SPECIES	1	MAPK4 (ENSNVIG00000002506)	SKA1 (ENSNVIG00000002493)	CXXC1 (ENSNVIG00000002380)	MBD1 (ENSNVIG00000001896)	ENSNVIG00000001883	CFAP53 (ENSNVIG00000001864)	MYO5B (ENSNVIG00000001798)	ACAA2 (ENSNVIG00000001712)	LIPG (ENSNVIG00000001676)	RPL17 (ENSNVIG00000001575)	CR032 (ENSNVIG00000001568)	DYM (ENSNVIG00000001500)	SMAD7 (ENSNVIG00000001490)	CTIF (ENSNVIG00000001442)	ZBTB7C (ENSNVIG00000001419)	SMAD2 (ENSNVIG00000001323) ##22	SKOR2 (ENSNVIG00000001287)	IER3IP1 (ENSNVIG00000001270)	HDHD2 (ENSNVIG00000001251)	KATNAL2 (ENSNVIG00000001211)	PIAS2 (ENSNVIG00000001141) ##29	B7Z1K9 (ENSNVIG00000001042)	LOXHD1 (ENSNVIG00000000795)	RNF165 (ENSNVIG00000000779)	CR025 (ENSNVIG00000000751)	HAUS1 (ENSNVIG00000000735)	ATP5F1A (ENSNVIG00000000707)	PSTPIP2 (ENSNVIG00000000692)	EPG5 (ENSNVIG00000000422)	SIGLEC15 (ENSNVIG00000000415)	UT1 (ENSNVIG00000000284)
Ferret	MODERN SPECIES	195							MYO5B (ENSMPUG00000000748)	ACAA2 (ENSMPUG00000000749)	LIPG (ENSMPUG00000000750)	ENSMPUG00000000801	ENSMPUG00000000819	DYM (ENSMPUG00000000838)	SMAD7 (ENSMPUG00000000842)	CTIF (ENSMPUG00000000844)	ZBTB7C (ENSMPUG00000000848)	SMAD2 (ENSMPUG00000000850) ##22	ENSMPUG00000000851	HDHD2 (ENSMPUG00000000855)	KATNAL2 (ENSMPUG00000000857)	PIAS2 (ENSMPUG00000000861) ##29	ST8SIA5 (ENSMPUG00000000867)	LOXHD1 (ENSMPUG00000000881)	RNF165 (ENSMPUG00000000899)	C18orf25 (ENSMPUG00000000916)	HAUS1 (ENSMPUG00000000919)	ENSMPUG00000000923	PSTPIP2 (ENSMPUG00000000965)	EPG5 (ENSMPUG00000000970)	SIGLEC15 (ENSMPUG00000000985)	SLC14A1 (ENSMPUG00000000989)	ENSMPUG00000001002
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000154879	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896.a.a	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.bb.b.a	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b	ENSGT00390000018729.a.a
Red fox	MODERN SPECIES	23	ILF2 (ENSVVUG00000028258)	SNAPIN (ENSVVUG00000028257)	CHTOP (ENSVVUG00000028256)	S100A1 (ENSVVUG00000028255)	S100A13 (ENSVVUG00000028253)	S100A14 (ENSVVUG00000028252)	S100A16 (ENSVVUG00000028251)	S100A2 (ENSVVUG00000028250)	S100A3 (ENSVVUG00000028247)	S100A4 (ENSVVUG00000028246)	S100A5 (ENSVVUG00000028245)	ENSVVUG00000028244	S100A8 (ENSVVUG00000028243)	S100A12 (ENSVVUG00000028241)	S100A9 (ENSVVUG00000028236)	SMAD2 (ENSVVUG00000028225) ##22	ENSVVUG00000028208	IER3IP1 (ENSVVUG00000028197)	HDHD2 (ENSVVUG00000028191)	KATNAL2 (ENSVVUG00000028183)	PIAS2 (ENSVVUG00000028165) ##29	ST8SIA5 (ENSVVUG00000028155)	LOXHD1 (ENSVVUG00000028114)	RNF165 (ENSVVUG00000028094)	CUNH18orf25 (ENSVVUG00000028091)	HAUS1 (ENSVVUG00000028089)	ENSVVUG00000028013	PSTPIP2 (ENSVVUG00000027962)	EPG5 (ENSVVUG00000027828)	SLC14A1 (ENSVVUG00000027806)	SLC14A2 (ENSVVUG00000027800)
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000154879	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896.a.a	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00390000006029	ENSGT00550000074846.bb.b.a	ENSGT00940000158788	ENSGT00390000007354	ENSGT01080000257333.E.o.a.b	ENSGT00390000018729.a.a
Dog	MODERN SPECIES	35	SLC27A3 (ENSCAFG00845001620)	INTS3 (ENSCAFG00845001651)	ILF2 (ENSCAFG00845001704)	ENSCAFG00845001748	CHTOP (ENSCAFG00845001816)	S100A1 (ENSCAFG00845001897)	S100A13 (ENSCAFG00845001940)	S100A14 (ENSCAFG00845001986)	S100A16 (ENSCAFG00845002007)	S100A2 (ENSCAFG00845002036)	S100A4 (ENSCAFG00845002094)	S100A5 (ENSCAFG00845002122)	S100A8 (ENSCAFG00845002217)	S100A8 (ENSCAFG00845002254)	S100A9 (ENSCAFG00845002276)	SMAD2 (ENSCAFG00845002338) ##22	SKOR2 (ENSCAFG00845002418)	IER3IP1 (ENSCAFG00845002460)	HDHD2 (ENSCAFG00845002479)	KATNAL2 (ENSCAFG00845002494)	PIAS2 (ENSCAFG00845002646) ##29	ST8SIA5 (ENSCAFG00845002742)	ENSCAFG00845002851	C7H18orf25 (ENSCAFG00845003098)	C7H18orf25 (ENSCAFG00845003164)	HAUS1 (ENSCAFG00845003245)	ATP5F1A (ENSCAFG00845003277)	PSTPIP2 (ENSCAFG00845003305)	EPG5 (ENSCAFG00845003404)	SIGLEC15 (ENSCAFG00845003447)	SLC14A1 (ENSCAFG00845003486)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	271	ILF2 (ENSCAFG00020010294)	ENSCAFG00020010315	CHTOP (ENSCAFG00020010322)	S100A1 (ENSCAFG00020010337)	ENSCAFG00020010343	S100A14 (ENSCAFG00020010345)	S100A16 (ENSCAFG00020010346)	S100A2 (ENSCAFG00020010348)	S100A3 (ENSCAFG00020010349)	ENSCAFG00020010352	S100A5 (ENSCAFG00020010354)	ENSCAFG00020010358	S100A8 (ENSCAFG00020010359)	S100A12 (ENSCAFG00020010365)	ENSCAFG00020010368	ENSCAFG00020010374 ##22	ENSCAFG00020010376 ##22	SKOR2 (ENSCAFG00020010387)	ENSCAFG00020010389	HDHD2 (ENSCAFG00020010391)	KATNAL2 (ENSCAFG00020010403)	PIAS2 (ENSCAFG00020010501) ##29	ST8SIA5 (ENSCAFG00020010505)	LOXHD1 (ENSCAFG00020010557)	RNF165 (ENSCAFG00020010709)	C18orf25 (ENSCAFG00020010717)	HAUS1 (ENSCAFG00020010719)	ENSCAFG00020010725	PSTPIP2 (ENSCAFG00020010751)	EPG5 (ENSCAFG00020010774)	SIGLEC15 (ENSCAFG00020010814)
Dingo	MODERN SPECIES	271	ENSCAFG00020010315	CHTOP (ENSCAFG00020010322)	S100A1 (ENSCAFG00020010337)	ENSCAFG00020010343	S100A14 (ENSCAFG00020010345)	S100A16 (ENSCAFG00020010346)	S100A2 (ENSCAFG00020010348)	S100A3 (ENSCAFG00020010349)	ENSCAFG00020010352	S100A5 (ENSCAFG00020010354)	ENSCAFG00020010358	S100A8 (ENSCAFG00020010359)	S100A12 (ENSCAFG00020010365)	ENSCAFG00020010368	ENSCAFG00020010374 ##22	ENSCAFG00020010376 ##22	SKOR2 (ENSCAFG00020010387)	ENSCAFG00020010389	HDHD2 (ENSCAFG00020010391)	KATNAL2 (ENSCAFG00020010403)	PIAS2 (ENSCAFG00020010501) ##29	ST8SIA5 (ENSCAFG00020010505)	LOXHD1 (ENSCAFG00020010557)	RNF165 (ENSCAFG00020010709)	C18orf25 (ENSCAFG00020010717)	HAUS1 (ENSCAFG00020010719)	ENSCAFG00020010725	PSTPIP2 (ENSCAFG00020010751)	EPG5 (ENSCAFG00020010774)	SIGLEC15 (ENSCAFG00020010814)	SLC14A1 (ENSCAFG00020010836)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153499.a ##22
Hedgehog	MODERN SPECIES	8024																SMAD2 (ENSEEUG00000007736) ##22
Common shrew	MODERN SPECIES	5482																SMAD2 (ENSSARG00000003487) ##22
Platypus	MODERN SPECIES	14	ELAC1 (ENSOANG00000008118)	ME2 (ENSOANG00000008119)	ENSOANG00000008122	ENSOANG00000045887	ENSOANG00000008124	ENSOANG00000008125	ENSOANG00000008126	MYO5B (ENSOANG00000008127)	ACAA2 (ENSOANG00000002559)	LIPG (ENSOANG00000001131)	ENSOANG00000002910	DYM (ENSOANG00000007612)	ENSOANG00000007611	CTIF (ENSOANG00000001337)	ZBTB7C (ENSOANG00000005929)	SMAD2 (ENSOANG00000001971) ##22	SKOR2 (ENSOANG00000038832)	IER3IP1 (ENSOANG00000045983)	ENSOANG00000042577	HDHD2 (ENSOANG00000012019)	KATNAL2 (ENSOANG00000012018)	PIAS2 (ENSOANG00000012017) ##29	ST8SIA5 (ENSOANG00000014835)	LOXHD1 (ENSOANG00000014833)	RNF165 (ENSOANG00000014831)	C18orf25 (ENSOANG00000004994)	ENSOANG00000048405	UBAP2 (ENSOANG00000010219)	UBE2R2 (ENSOANG00000036151)	NOL6 (ENSOANG00000010217)	AQP3 (ENSOANG00000014661)
Anura	ANCESTRAL SPECIES	158							ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b ##29	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997	ENSGT00390000016167	ENSGT00940000161143	ENSGT00390000006029	ENSGT00550000074846	ENSGT00940000158788	ENSGT00390000007354
Frog	MODERN SPECIES		elac1 (ENSXETG00000027126)	smad4 (ENSXETG00000022355)	lipg (ENSXETG00000022391)	ENSXETG00000048479	acaa2 (ENSXETG00000020333)	myo5b (ENSXETG00000020323)	ENSXETG00000047825	ENSXETG00000047713	tor4a (ENSXETG00000020322)	ctif (ENSXETG00000026836)	smad7 (ENSXETG00000020317)	dym (ENSXETG00000020310)	c18orf32 (ENSXETG00000026840)	rpl17 (ENSXETG00000020308)	zbtb7c (ENSXETG00000035017)	smad2 (ENSXETG00000020292) ##22	ENSXETG00000045677	ENSXETG00000038874	ier3ip1 (ENSXETG00000046485)	hdhd2 (ENSXETG00000020183)	katnal2 (ENSXETG00000033325)	pias2 (ENSXETG00000021519) ##29	eef2.2 (ENSXETG00000021508)	epg5 (ENSXETG00000032699)	ENSXETG00000049379	PSTPIP2 (ENSXETG00000033294)	atp5f1a (ENSXETG00000002315)	haus1 (ENSXETG00000021500)	fdx2 (ENSXETG00000021499)	c18orf25 (ENSXETG00000021498)	rnf165 (ENSXETG00000036743)
Leishan spiny toad	MODERN SPECIES		ACAA2 (ENSLLEG00000000011)	LIPG (ENSLLEG00000004433)	ENSLLEG00000004416	ENSLLEG00000004390	C18orf32 (ENSLLEG00000004379)	ENSLLEG00000004377	ENSLLEG00000004373	ENSLLEG00000004369	DYM (ENSLLEG00000004334)	ENSLLEG00000004313	ENSLLEG00000004310	ENSLLEG00000004306	ENSLLEG00000004298	CTIF (ENSLLEG00000004281)	ZBTB7C (ENSLLEG00000004273)	SMAD2 (ENSLLEG00000004265) ##22	SKOR2 (ENSLLEG00000004251)	IER3IP1 (ENSLLEG00000004247)	HDHD2 (ENSLLEG00000004239)	KATNAL2 (ENSLLEG00000004217)	PIAS2 (ENSLLEG00000004193) ##29	ENSLLEG00000004182	ENSLLEG00000004153	ENSLLEG00000004148	ENSLLEG00000004145	ST8SIA5 (ENSLLEG00000004139)	LOXHD1 (ENSLLEG00000004123)	RNF165 (ENSLLEG00000004111)	C18orf25 (ENSLLEG00000004107)	FDX2 (ENSLLEG00000004099)	HAUS1 (ENSLLEG00000004094)
Coelacanth	MODERN SPECIES	1335															ZBTB7C (ENSLACG00000005229)	SMAD2 (ENSLACG00000007380) ##22
Actinopterygii	ANCESTRAL SPECIES	178									ENSGT00950000183010.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000160904	ENSGT00390000003050	ENSGT00940000157400	ENSGT00960000187050	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT01030000234518.B.a.a
Neopterygii	ANCESTRAL SPECIES	174											ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00390000002216	ENSGT00400000024390	ENSGT00940000153499.a ##22	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000012082	ENSGT00390000016188	ENSGT00940000158864	ENSGT00940000160904	ENSGT00390000003050	ENSGT01030000234528.B.a.b	ENSGT00390000002865	ENSGT01100000263557.A.b.a.b.b	ENSGT00910000144278	ENSGT01030000234614.A	ENSGT00940000159834
Spotted gar	MODERN SPECIES	658	pum3 (ENSLOCG00000012529)	kcnv2b (ENSLOCG00000012521)	vldlr (ENSLOCG00000012505)	ENSLOCG00000012502	spp1 (ENSLOCG00000012495)	rchy1 (ENSLOCG00000012485)	ENSLOCG00000012480	ENSLOCG00000012476	ENSLOCG00000012470	ENSLOCG00000012458	ENSLOCG00000012446	ENSLOCG00000012442	cldn23.1 (ENSLOCG00000017550)	ENSLOCG00000012428	ENSLOCG00000012421	SMAD2 (ENSLOCG00000012409) ##22	skor2 (ENSLOCG00000012403)	hdhd2 (ENSLOCG00000012392)	katnal2 (ENSLOCG00000012385)	sigmar1 (ENSLOCG00000012381)	galt (ENSLOCG00000012369)	cntfr (ENSLOCG00000012362)	IL11RA (ENSLOCG00000012354)	tmem267 (ENSLOCG00000012351)	ENSLOCG00000012345	ADAMTS12 (ENSLOCG00000012331)	RXFP3 (ENSLOCG00000017549)	slc45a2 (ENSLOCG00000012323)	amacr (ENSLOCG00000012318)	rai14 (ENSLOCG00000012300)	fgf10b (ENSLOCG00000012296)
Reedfish	MODERN SPECIES	15	hpse (ENSECRG00000008394)	HELQ (ENSECRG00000008340)	mrps18c (ENSECRG00000008321)	ENSECRG00000008308	abraxas1 (ENSECRG00000008293)	GPAT3 (ENSECRG00000008282)	cycsb (ENSECRG00000008271)	nkx6.1 (ENSECRG00000008236)	rpl17 (ENSECRG00000008193)	C18orf32 (ENSECRG00000008179)	DYM (ENSECRG00000008045)	smad7 (ENSECRG00000008025)	CTIF (ENSECRG00000008014)	ENSECRG00000008006	ZBTB7C (ENSECRG00000007988)	SMAD2 (ENSECRG00000007967) ##22	skor2 (ENSECRG00000007957)	ier3ip1 (ENSECRG00000007948)	hdhd2 (ENSECRG00000007937)	katnal2 (ENSECRG00000007921)	sigmar1 (ENSECRG00000007911)	galt (ENSECRG00000007892)	ENSECRG00000007879	cntfr (ENSECRG00000007868)	IL11RA (ENSECRG00000007857)	tmem267 (ENSECRG00000007850)	rai14 (ENSECRG00000007831)	NPY5R (ENSECRG00000007816)	tma16 (ENSECRG00000007806)	ENSECRG00000007781	MARCHF1 (ENSECRG00000007762)
Elephant shark	MODERN SPECIES	1657	me2 (ENSCMIG00000013701)	ENSCMIG00000013781	ENSCMIG00000013802	ENSCMIG00000013806	myo5b (ENSCMIG00000013834)	acaa2 (ENSCMIG00000013926)	ENSCMIG00000013935	ENSCMIG00000013938	rpl17 (ENSCMIG00000013948)	ENSCMIG00000013965	DYM (ENSCMIG00000013971)	smad7 (ENSCMIG00000014000)	CTIF (ENSCMIG00000014002)	ENSCMIG00000014004	ZBTB7C (ENSCMIG00000014005)	SMAD2 (ENSCMIG00000014014) ##22
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153499.c #22
Ciona intestinalis	MODERN SPECIES	3	ENSCING00000011300	ENSCING00000020992	ENSCING00000023507	ENSCING00000023448	ENSCING00000018419	ENSCING00000024723	ENSCING00000023422	ENSCING00000003599	ENSCING00000003627	ENSCING00000003612	ENSCING00000003610	ENSCING00000017900	foxk (ENSCING00000006184)	ENSCING00000021186	ENSCING00000021668	ENSCING00000006188 #22	ENSCING00000006186	ENSCING00000018080	ENSCING00000016355	ENSCING00000025079	ENSCING00000018242	ENSCING00000006204	ENSCING00000006206	ENSCING00000011306	ENSCING00000023998	ENSCING00000011307	ENSCING00000022084	ENSCING00000007241	ENSCING00000006215	ENSCING00000006211	ENSCING00000006209
Ciona savignyi	MODERN SPECIES	253	ENSCSAVG00000005861	ENSCSAVG00000005853	ENSCSAVG00000005845	ENSCSAVG00000005837	ENSCSAVG00000005836	ENSCSAVG00000005831	ENSCSAVG00000005824	ENSCSAVG00000005818	ENSCSAVG00000005815	ENSCSAVG00000005791	ENSCSAVG00000005607	ENSCSAVG00000005600	ENSCSAVG00000005435	ENSCSAVG00000004941	ENSCSAVG00000004938	ENSCSAVG00000004749 #22	ENSCSAVG00000004744	ENSCSAVG00000004742	ENSCSAVG00000004739	ENSCSAVG00000004737	ENSCSAVG00000004732	ENSCSAVG00000004729	ENSCSAVG00000004725	ENSCSAVG00000004695	ENSCSAVG00000004681	ENSCSAVG00000004640	ENSCSAVG00000004185
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153499.d #22
Ciona savignyi	MODERN SPECIES	74	ENSCSAVG00000005389	ENSCSAVG00000005388	ENSCSAVG00000005384	ENSCSAVG00000005383	ENSCSAVG00000005379	ENSCSAVG00000005374	ENSCSAVG00000005243	ENSCSAVG00000005198	ENSCSAVG00000005189	ENSCSAVG00000005063	ENSCSAVG00000005058	ENSCSAVG00000005056	ENSCSAVG00000005002	ENSCSAVG00000004998	ENSCSAVG00000004987	ENSCSAVG00000004817 #22	ENSCSAVG00000004811	ENSCSAVG00000004807	ENSCSAVG00000004804	ENSCSAVG00000004803	ENSCSAVG00000004800	ENSCSAVG00000004797	ENSCSAVG00000004796	ENSCSAVG00000004731	ENSCSAVG00000004728	ENSCSAVG00000004721	ENSCSAVG00000004717	ENSCSAVG00000004701	ENSCSAVG00000004688	ENSCSAVG00000004685	ENSCSAVG00000004667