Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Theria	ANCESTRAL SPECIES	22	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Primates	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Simiiformes	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Catarrhini	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Hominidae	ANCESTRAL SPECIES	22	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Human	MODERN SPECIES	6	DPP8 (ENSG00000074603) #7	HACD3 (ENSG00000074696) #8	INTS14 (ENSG00000138614) #9	SLC24A1 (ENSG00000074621) #10	DENND4A (ENSG00000174485) #11	RAB11A (ENSG00000103769) #12	MEGF11 (ENSG00000157890) #13	DIS3L (ENSG00000166938) #14	TIPIN (ENSG00000075131) #15	MAP2K1 (ENSG00000169032) #16	SNAPC5 (ENSG00000174446) #17	RPL4 (ENSG00000174444) #18	ZWILCH (ENSG00000174442) #19	LCTL (ENSG00000188501) #20	SMAD6 (ENSG00000137834) #21	SMAD3 (ENSG00000166949) #22	AAGAB (ENSG00000103591) #23	IQCH (ENSG00000103599) #24	C15orf61 (ENSG00000189227) #25	MAP2K5 (ENSG00000137764) #26	SKOR1 (ENSG00000188779) #27	PIAS1 (ENSG00000033800) #28	ENSG00000260007 #29	CALML4 (ENSG00000129007) #30	CLN6 (ENSG00000128973) #31	FEM1B (ENSG00000169018) #32	ITGA11 (ENSG00000137809) #33	CORO2B (ENSG00000103647) #34	ANP32A (ENSG00000140350) #35	SPESP1 (ENSG00000258484) #36	NOX5 (ENSG00000290203) #37
Pan	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00510000046986.m.a	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.b.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Bonobo	MODERN SPECIES	6	RAB11A (ENSPPAG00000030195) #12	MEGF11 (ENSPPAG00000043580) #13	DIS3L (ENSPPAG00000019888) #14	TIPIN (ENSPPAG00000033427) #15	ENSPPAG00000041842	ENSPPAG00000038145	MAP2K1 (ENSPPAG00000028577) #16	ENSPPAG00000033063	SNAPC5 (ENSPPAG00000041196) #17	ENSPPAG00000035309 ##18	ZWILCH (ENSPPAG00000033861) #19	LCTL (ENSPPAG00000040836) #20	SMAD6 (ENSPPAG00000027722) #21	ENSPPAG00000036915	ENSPPAG00000020485	SMAD3 (ENSPPAG00000033769) #22	AAGAB (ENSPPAG00000041055) #23	IQCH (ENSPPAG00000042974) #24	C15orf61 (ENSPPAG00000026999) #25	MAP2K5 (ENSPPAG00000036945) #26	ENSPPAG00000033373	ENSPPAG00000036055 #27	PIAS1 (ENSPPAG00000041443) #28	ENSPPAG00000033363 #30	CLN6 (ENSPPAG00000030498) #31	FEM1B (ENSPPAG00000030523) #32	ITGA11 (ENSPPAG00000030683) #33	CORO2B (ENSPPAG00000030458) #34	ENSPPAG00000034193 #35	ENSPPAG00000020890	SPESP1 (ENSPPAG00000040777) #36
Chimpanzee	MODERN SPECIES	6	DENND4A (ENSPTRG00000007186) #11	RAB11A (ENSPTRG00000044358) #12	MEGF11 (ENSPTRG00000007189) #13	DIS3L (ENSPTRG00000007191) #14	TIPIN (ENSPTRG00000007192) #15	ENSPTRG00000051889	MAP2K1 (ENSPTRG00000007193) #16	ENSPTRG00000049603	SNAPC5 (ENSPTRG00000007194) #17	RPL4 (ENSPTRG00000007195) ##18	ZWILCH (ENSPTRG00000007196) #19	LCTL (ENSPTRG00000007197) #20	SMAD6 (ENSPTRG00000007198) #21	ENSPTRG00000044014	ENSPTRG00000047146	SMAD3 (ENSPTRG00000007199) #22	AAGAB (ENSPTRG00000007202) #23	IQCH (ENSPTRG00000007205) #24	C15H15orf61 (ENSPTRG00000030250) #25	MAP2K5 (ENSPTRG00000007207) #26	ENSPTRG00000048990	SKOR1 (ENSPTRG00000007209) #27	PIAS1 (ENSPTRG00000007210) #28	CALML4 (ENSPTRG00000007211) #30	CLN6 (ENSPTRG00000007212) #31	FEM1B (ENSPTRG00000007214) #32	ITGA11 (ENSPTRG00000007215) #33	CORO2B (ENSPTRG00000007218) #34	ANP32A (ENSPTRG00000007219) #35	ENSPTRG00000050341	SPESP1 (ENSPTRG00000007221) #36
Gorilla	MODERN SPECIES	463																SMAD3 (ENSGGOG00000043207) #22
Orangutan	MODERN SPECIES	6	INTS14 (ENSPPYG00000006570) #9	SLC24A1 (ENSPPYG00000006571) #10	DENND4A (ENSPPYG00000006572) #11	RAB11A (ENSPPYG00000006573) #12	MEGF11 (ENSPPYG00000039385) #13	DIS3L (ENSPPYG00000006575) #14	TIPIN (ENSPPYG00000031745) #15	MAP2K1 (ENSPPYG00000006576) #16	ENSPPYG00000032290	SNAPC5 (ENSPPYG00000040277) #17	RPL4 (ENSPPYG00000006578) #18	ZWILCH (ENSPPYG00000006579) #19	LCTL (ENSPPYG00000006580) #20	ENSPPYG00000006581 #21	ENSPPYG00000006582	SMAD3 (ENSPPYG00000006583) #22	AAGAB (ENSPPYG00000006584) #23	IQCH (ENSPPYG00000006585) #24	C15orf61 (ENSPPYG00000006586) #25	MAP2K5 (ENSPPYG00000006587) #26	SKOR1 (ENSPPYG00000006588) #27	PIAS1 (ENSPPYG00000006589) #28	ENSPPYG00000006590 #30	CLN6 (ENSPPYG00000006591) #31	FEM1B (ENSPPYG00000032577) #32	ITGA11 (ENSPPYG00000006593) #33	CORO2B (ENSPPYG00000006594) #34	ENSPPYG00000006595 #35	SPESP1 (ENSPPYG00000029816) #36	NOX5 (ENSPPYG00000006596)	GLCE (ENSPPYG00000006598)
Gibbon	MODERN SPECIES	21	HACD3 (ENSNLEG00000012725) #8	INTS14 (ENSNLEG00000012745) #9	ENSNLEG00000012767 #10	DENND4A (ENSNLEG00000012772) #11	RAB11A (ENSNLEG00000012853) #12	MEGF11 (ENSNLEG00000012863) #13	DIS3L (ENSNLEG00000012891) #14	TIPIN (ENSNLEG00000012909) #15	MAP2K1 (ENSNLEG00000012913) #16	SNAPC5 (ENSNLEG00000033124) #17	ENSNLEG00000012938 ##18	ZWILCH (ENSNLEG00000012950) #19	LCTL (ENSNLEG00000012956) #20	SMAD6 (ENSNLEG00000032864) #21	ENSNLEG00000028836	SMAD3 (ENSNLEG00000012983) #22	AAGAB (ENSNLEG00000013006) #23	IQCH (ENSNLEG00000013025) #24	C15orf61 (ENSNLEG00000013065) #25	MAP2K5 (ENSNLEG00000013066) #26	ENSNLEG00000032785	SKOR1 (ENSNLEG00000013091) #27	ENSNLEG00000031759	PIAS1 (ENSNLEG00000013103) #28	ENSNLEG00000013164 #30	CLN6 (ENSNLEG00000013178) #31	FEM1B (ENSNLEG00000013213) #32	ITGA11 (ENSNLEG00000013220) #33	CORO2B (ENSNLEG00000013333) #34	ANP32A (ENSNLEG00000013347) #35	SPESP1 (ENSNLEG00000013404) #36
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36	ENSGT00940000162591
Vervet Monkey	MODERN SPECIES	18	INTS14 (ENSCSAG00000012981) #9	SLC24A1 (ENSCSAG00000013003) #10	DENND4A (ENSCSAG00000013032) #11	RAB11A (ENSCSAG00000013038) #12	MEGF11 (ENSCSAG00000013112) #13	DIS3L (ENSCSAG00000013140) #14	TIPIN (ENSCSAG00000013176) #15	MAP2K1 (ENSCSAG00000013191) #16	SNAPC5 (ENSCSAG00000013199) #17	ENSCSAG00000013205 ##18	ZWILCH (ENSCSAG00000013218) #19	LCTL (ENSCSAG00000013237) #20	SMAD6 (ENSCSAG00000013248) #21	ENSCSAG00000013271	ENSCSAG00000019736	SMAD3 (ENSCSAG00000013275) #22	AAGAB (ENSCSAG00000013281) #23	IQCH (ENSCSAG00000013352) #24	C15orf61 (ENSCSAG00000013380) #25	MAP2K5 (ENSCSAG00000013397) #26	SKOR1 (ENSCSAG00000013424) #27	PIAS1 (ENSCSAG00000013455) #28	CALML4 (ENSCSAG00000013468) #30	CLN6 (ENSCSAG00000013477) #31	ENSCSAG00000013485	ITGA11 (ENSCSAG00000013505) #33	CORO2B (ENSCSAG00000013518) #34	ANP32A (ENSCSAG00000013528) #35	SPESP1 (ENSCSAG00000013535) #36	NOX5 (ENSCSAG00000013567)	GLCE (ENSCSAG00000013585)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00910000147053
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00910000147053
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00910000147053
Drill	MODERN SPECIES	253	DENND4A (ENSMLEG00000041101) #11	RAB11A (ENSMLEG00000032505) #12	MEGF11 (ENSMLEG00000042443) #13	ENSMLEG00000039621	DIS3L (ENSMLEG00000034558) #14	TIPIN (ENSMLEG00000031419) #15	MAP2K1 (ENSMLEG00000034124) #16	SNAPC5 (ENSMLEG00000044262) #17	ENSMLEG00000043250 ##18	ZWILCH (ENSMLEG00000031789) #19	LCTL (ENSMLEG00000011538) #20	ENSMLEG00000036582	ENSMLEG00000039010	ENSMLEG00000033311	ENSMLEG00000039372	SMAD3 (ENSMLEG00000032633) #22	AAGAB (ENSMLEG00000042581) #23	IQCH (ENSMLEG00000008461) #24	C15orf61 (ENSMLEG00000044432) #25	MAP2K5 (ENSMLEG00000032952) #26	SKOR1 (ENSMLEG00000033424) #27	PIAS1 (ENSMLEG00000042488) #28	CALML4 (ENSMLEG00000034518) #30	CLN6 (ENSMLEG00000031755) #31	FEM1B (ENSMLEG00000031589) #32	ITGA11 (ENSMLEG00000034075) #33	CORO2B (ENSMLEG00000034024) #34	ANP32A (ENSMLEG00000028255) #35	SPESP1 (ENSMLEG00000035603) #36	NOX5 (ENSMLEG00000025119)	ENSMLEG00000026060
Sooty mangabey	MODERN SPECIES	336	SLC24A1 (ENSCATG00000034684) #10	DENND4A (ENSCATG00000030001) #11	RAB11A (ENSCATG00000034739) #12	MEGF11 (ENSCATG00000032543) #13	DIS3L (ENSCATG00000044661) #14	TIPIN (ENSCATG00000040328) #15	MAP2K1 (ENSCATG00000038127) #16	SNAPC5 (ENSCATG00000029571) #17	ENSCATG00000031544 ##18	ZWILCH (ENSCATG00000036836) #19	LCTL (ENSCATG00000033622) #20	ENSCATG00000019079	SMAD6 (ENSCATG00000002013) #21	ENSCATG00000035445	ENSCATG00000000879	SMAD3 (ENSCATG00000009733) #22	AAGAB (ENSCATG00000043588) #23	IQCH (ENSCATG00000042766) #24	C15orf61 (ENSCATG00000012736) #25	MAP2K5 (ENSCATG00000040709) #26	SKOR1 (ENSCATG00000011653) #27	PIAS1 (ENSCATG00000010291) #28	CALML4 (ENSCATG00000040034) #30	CLN6 (ENSCATG00000003907) #31	FEM1B (ENSCATG00000044684) #32	ITGA11 (ENSCATG00000030599) #33	CORO2B (ENSCATG00000040950) #34	ENSCATG00000024063	ANP32A (ENSCATG00000031468) #35	SPESP1 (ENSCATG00000044425) #36	NOX5 (ENSCATG00000036564)
Olive baboon	MODERN SPECIES	17	SLC24A1 (ENSPANG00000016700) #10	DENND4A (ENSPANG00000016685) #11	RAB11A (ENSPANG00000016687) #12	MEGF11 (ENSPANG00000016670) #13	ENSPANG00000024144	ENSPANG00000046531	DIS3L (ENSPANG00000016671) #14	TIPIN (ENSPANG00000016672) #15	MAP2K1 (ENSPANG00000016664) #16	SNAPC5 (ENSPANG00000016665) #17	ENSPANG00000016666 ##18	ZWILCH (ENSPANG00000016646) #19	LCTL (ENSPANG00000016647) #20	SMAD6 (ENSPANG00000016648) #21	ENSPANG00000016626	SMAD3 (ENSPANG00000016627) #22	AAGAB (ENSPANG00000016628) #23	IQCH (ENSPANG00000016625) #24	C15orf61 (ENSPANG00000016591) #25	MAP2K5 (ENSPANG00000016592) #26	SKOR1 (ENSPANG00000016593) #27	ENSPANG00000043681	PIAS1 (ENSPANG00000016583) #28	CALML4 (ENSPANG00000016584) #30	CLN6 (ENSPANG00000016585) #31	ENSPANG00000037059	FEM1B (ENSPANG00000016581) #32	ITGA11 (ENSPANG00000016582) #33	CORO2B (ENSPANG00000016540) #34	ENSPANG00000048171	ANP32A (ENSPANG00000016536) #35
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l	ENSGT00390000005362 #36	ENSGT00940000162591
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.a.a
Rhesus	MODERN SPECIES	17	INTS14 (ENSMMUG00000008095) #9	SLC24A1 (ENSMMUG00000022059) #10	DENND4A (ENSMMUG00000022056) #11	RAB11A (ENSMMUG00000008006) #12	MEGF11 (ENSMMUG00000008007) #13	DIS3L (ENSMMUG00000003693) #14	TIPIN (ENSMMUG00000003695) #15	MAP2K1 (ENSMMUG00000016840) #16	SNAPC5 (ENSMMUG00000060148) #17	RPL4 (ENSMMUG00000016844) ##18	ZWILCH (ENSMMUG00000029588) #19	LCTL (ENSMMUG00000017447) #20	ENSMMUG00000063378	SMAD6 (ENSMMUG00000019018) #21	ENSMMUG00000057696	SMAD3 (ENSMMUG00000015455) #22	ENSMMUG00000051534	AAGAB (ENSMMUG00000041415) #23	IQCH (ENSMMUG00000015458) #24	C7H15orf61 (ENSMMUG00000060549) #25	MAP2K5 (ENSMMUG00000014482) #26	SKOR1 (ENSMMUG00000014485) #27	PIAS1 (ENSMMUG00000011699) #28	CLN6 (ENSMMUG00000011703) #31	FEM1B (ENSMMUG00000008311) #32	ITGA11 (ENSMMUG00000004026) #33	CORO2B (ENSMMUG00000006356) #34	ANP32A (ENSMMUG00000022717) #35	ENSMMUG00000064021	SPESP1 (ENSMMUG00000063939) #36	NOX5 (ENSMMUG00000006230)
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000047947	ENSMFAG00000060677	ENSMFAG00000055472	RAB11A (ENSMFAG00000000699) #12	MEGF11 (ENSMFAG00000038247) #13	DIS3L (ENSMFAG00000035628) #14	TIPIN (ENSMFAG00000031924) #15	MAP2K1 (ENSMFAG00000036522) ##16	ENSMFAG00000063036	SNAPC5 (ENSMFAG00000046383) #17	RPL4 (ENSMFAG00000036412) ##18	ZWILCH (ENSMFAG00000036529) #19	LCTL (ENSMFAG00000000458) #20	ENSMFAG00000037066	ENSMFAG00000062655	SMAD3 (ENSMFAG00000001781) #22	AAGAB (ENSMFAG00000040550) #23	IQCH (ENSMFAG00000001124) #24	C15orf61 (ENSMFAG00000053739) #25	MAP2K5 (ENSMFAG00000030100) #26	SKOR1 (ENSMFAG00000001347) #27	PIAS1 (ENSMFAG00000038832) #28	CLN6 (ENSMFAG00000042975) #31	CALML4 (ENSMFAG00000036145) #30	FEM1B (ENSMFAG00000064469) #32	ITGA11 (ENSMFAG00000001090) #33	CORO2B (ENSMFAG00000030894) #34	ANP32A (ENSMFAG00000043083) #35	ENSMFAG00000050608	SPESP1 (ENSMFAG00000043000) #36	NOX5 (ENSMFAG00000000728)
Pig-tailed macaque	MODERN SPECIES	77	SLC24A1 (ENSMNEG00000041188) #10	DENND4A (ENSMNEG00000031159) #11	RAB11A (ENSMNEG00000043040) #12	MEGF11 (ENSMNEG00000028540) #13	DIS3L (ENSMNEG00000035066) #14	TIPIN (ENSMNEG00000031947) #15	MAP2K1 (ENSMNEG00000027299) #16	SNAPC5 (ENSMNEG00000032504) #17	ENSMNEG00000027886 ##18	ZWILCH (ENSMNEG00000034955) #19	LCTL (ENSMNEG00000002923) #20	ENSMNEG00000031888	SMAD6 (ENSMNEG00000034598) #21	ENSMNEG00000032567	ENSMNEG00000030486	SMAD3 (ENSMNEG00000033094) #22	AAGAB (ENSMNEG00000040056) #23	IQCH (ENSMNEG00000034386) #24	C15orf61 (ENSMNEG00000034192) #25	MAP2K5 (ENSMNEG00000043681) #26	SKOR1 (ENSMNEG00000032875) #27	PIAS1 (ENSMNEG00000030278) #28	CALML4 (ENSMNEG00000033193) #30	CLN6 (ENSMNEG00000034743) #31	FEM1B (ENSMNEG00000033491) #32	ITGA11 (ENSMNEG00000031314) #33	CORO2B (ENSMNEG00000028626) #34	ANP32A (ENSMNEG00000043179) #35	ENSMNEG00000038547	SPESP1 (ENSMNEG00000024286) #36	NOX5 (ENSMNEG00000032218)
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a #15	ENSGT00940000153487.b.b.i.a #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000005362 #36	ENSGT00940000162591
Golden snub-nosed monkey	MODERN SPECIES	1106		RAB11A (ENSRROG00000035305) #12	MEGF11 (ENSRROG00000025747) #13	DIS3L (ENSRROG00000038323) #14	TIPIN (ENSRROG00000004107) #15	MAP2K1 (ENSRROG00000034405) #16	SNAPC5 (ENSRROG00000042536) #17	ENSRROG00000036201 ##18	ZWILCH (ENSRROG00000042656) #19	LCTL (ENSRROG00000040652) #20	ENSRROG00000034499	ENSRROG00000009183	ENSRROG00000043245 #21	ENSRROG00000012076	ENSRROG00000003570	SMAD3 (ENSRROG00000024517) #22	AAGAB (ENSRROG00000042217) #23	IQCH (ENSRROG00000023549) #24	C15orf61 (ENSRROG00000026466) #25	MAP2K5 (ENSRROG00000043911) #26	ENSRROG00000000680	SKOR1 (ENSRROG00000040038) #27	PIAS1 (ENSRROG00000029180) #28	CALML4 (ENSRROG00000045323) #30	CLN6 (ENSRROG00000033033) #31	FEM1B (ENSRROG00000030899) #32	ITGA11 (ENSRROG00000032503) #33	CORO2B (ENSRROG00000043899) #34	ANP32A (ENSRROG00000029508) #35	ENSRROG00000028422	SPESP1 (ENSRROG00000031515) #36
Black snub-nosed monkey	MODERN SPECIES	1519	INTS14 (ENSRBIG00000037004) #9	SLC24A1 (ENSRBIG00000029938) #10	DENND4A (ENSRBIG00000043812) #11	RAB11A (ENSRBIG00000035649) #12	MEGF11 (ENSRBIG00000032238) #13	DIS3L (ENSRBIG00000029360) #14	TIPIN (ENSRBIG00000035207) #15	MAP2K1 (ENSRBIG00000031516) #16	SNAPC5 (ENSRBIG00000033556) #17	ENSRBIG00000043139 ##18	ZWILCH (ENSRBIG00000043121) #19	ENSRBIG00000038789	LCTL (ENSRBIG00000034724) #20	ENSRBIG00000044058	SMAD6 (ENSRBIG00000039005) #21	SMAD3 (ENSRBIG00000026650) #22	AAGAB (ENSRBIG00000027896) #23	IQCH (ENSRBIG00000037509) #24	C15orf61 (ENSRBIG00000041044) #25	MAP2K5 (ENSRBIG00000042741) #26	SKOR1 (ENSRBIG00000027225) #27	PIAS1 (ENSRBIG00000035465) #28	CALML4 (ENSRBIG00000022837) #30	CLN6 (ENSRBIG00000028123) #31	FEM1B (ENSRBIG00000029847) #32	ITGA11 (ENSRBIG00000032002) #33	CORO2B (ENSRBIG00000035447) #34	ANP32A (ENSRBIG00000032599) #35	SPESP1 (ENSRBIG00000038257) #36	NOX5 (ENSRBIG00000038740)	ENSRBIG00000044757
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.g.a.a #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000011417.l.b	ENSGT00390000005362 #36
Cebidae	ANCESTRAL SPECIES	29	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00940000170330	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.ub #35	ENSGT00390000005362 #36	ENSGT00390000006043
Marmoset	MODERN SPECIES	1	HACD3 (ENSCJAG00000007084) #8	INTS14 (ENSCJAG00000007118) #9	SLC24A1 (ENSCJAG00000007180) #10	DENND4A (ENSCJAG00000007209) #11	RAB11A (ENSCJAG00000042037) #12	ENSCJAG00000083582	MEGF11 (ENSCJAG00000007353) #13	DIS3L (ENSCJAG00000007411) #14	ENSCJAG00000085355	MAP2K1 (ENSCJAG00000007460) #16	SNAPC5 (ENSCJAG00000070895) #17	ENSCJAG00000007491 ##18	ZWILCH (ENSCJAG00000007524) #19	LCTL (ENSCJAG00000007558) #20	SMAD6 (ENSCJAG00000044644) #21	SMAD3 (ENSCJAG00000002088) #22	AAGAB (ENSCJAG00000002113) #23	IQCH (ENSCJAG00000002130) #24	ENSCJAG00000051609	ENSCJAG00000073121	C15orf61 (ENSCJAG00000054412) #25	MAP2K5 (ENSCJAG00000002156) #26	SKOR1 (ENSCJAG00000002196) #27	PIAS1 (ENSCJAG00000002224) #28	CALML4 (ENSCJAG00000002243) #30	ENSCJAG00000002250 #31	ENSCJAG00000074396	FEM1B (ENSCJAG00000002264) #32	ITGA11 (ENSCJAG00000002269) #33	CORO2B (ENSCJAG00000002319) #34	ENSCJAG00000086993
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a.a.a ##18	ENSGT00390000013696 #19	ENSGT00910000147890	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b.tb ##35	ENSGT01020000230346.C.c.b.a.b.a.b	ENSGT00390000005362 #36
Capuchin	MODERN SPECIES	248	TFAP2D (ENSCCAG00000027869)	DEFB110 (ENSCCAG00000030485)	DEFB113 (ENSCCAG00000014271)	DEFB114 (ENSCCAG00000027397)	CRISP1 (ENSCCAG00000024689)	PGK2 (ENSCCAG00000004646)	CRISP3 (ENSCCAG00000027207)	CRISP2 (ENSCCAG00000035454)	RHAG (ENSCCAG00000027136)	MAP2K1 (ENSCCAG00000024279) #16	SNAPC5 (ENSCCAG00000020529) #17	ENSCCAG00000022533 ##18	ZWILCH (ENSCCAG00000027333) #19	LCTL (ENSCCAG00000000633) #20	SMAD6 (ENSCCAG00000026913) #21	SMAD3 (ENSCCAG00000020767) #22	AAGAB (ENSCCAG00000024283) #23
Bolivian squirrel monkey	MODERN SPECIES	76									MAP2K1 (ENSSBOG00000023083) #16	SNAPC5 (ENSSBOG00000028815) #17	ENSSBOG00000015863 ##18	ZWILCH (ENSSBOG00000033149) #19	ENSSBOG00000031231	LCTL (ENSSBOG00000023227) #20	ENSSBOG00000022363 #21	SMAD3 (ENSSBOG00000020894) #22	AAGAB (ENSSBOG00000035741) #23	IQCH (ENSSBOG00000024935) #24	C15orf61 (ENSSBOG00000022188) #25	MAP2K5 (ENSSBOG00000028179) #26	SKOR1 (ENSSBOG00000031705) #27	ENSSBOG00000032111	PIAS1 (ENSSBOG00000030212) #28	CALML4 (ENSSBOG00000031073) #30	CLN6 (ENSSBOG00000035779) #31	FEM1B (ENSSBOG00000030419) #32	ITGA11 (ENSSBOG00000030635) #33	CORO2B (ENSSBOG00000019665) #34	ANP32A (ENSSBOG00000030699) #35	ENSSBOG00000020197	ENSSBOG00000025043
Mas night monkey	MODERN SPECIES	1197								DMAC1 (ENSANAG00000029014)	ENSANAG00000033377	KDM4C (ENSANAG00000024798)	GLDC (ENSANAG00000034753)	UHRF2 (ENSANAG00000025453)	ENSANAG00000028396	ENSANAG00000024963	SMAD6 (ENSANAG00000020717) #21	SMAD3 (ENSANAG00000001462) #22	ENSANAG00000031752	AAGAB (ENSANAG00000038049) #23	ENSANAG00000037777	IQCH (ENSANAG00000037205) #24	C15orf61 (ENSANAG00000019347) #25	ENSANAG00000033304	MAP2K5 (ENSANAG00000026610) #26	SKOR1 (ENSANAG00000026767) #27	PIAS1 (ENSANAG00000023771) #28	CALML4 (ENSANAG00000036088) #30	ENSANAG00000035306	ENSANAG00000022199	CLN6 (ENSANAG00000031462) #31	FEM1B (ENSANAG00000036003) #32	ITGA11 (ENSANAG00000024399) #33
Tarsier	MODERN SPECIES	1316																SMAD3 (ENSTSYG00000025697) #22	AAGAB (ENSTSYG00000010466) #23	IQCH (ENSTSYG00000010472) #24	CUNH15orf61 (ENSTSYG00000014554) #25	MAP2K5 (ENSTSYG00000013834) #26
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.cb.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Mouse lemur	MODERN SPECIES	22	ENSMICG00000034025	ENSMICG00000028970	ENSMICG00000044235	DENND4A (ENSMICG00000004000) #11	RAB11A (ENSMICG00000041504) #12	ENSMICG00000035335	MEGF11 (ENSMICG00000004354) #13	DIS3L (ENSMICG00000004374) #14	TIPIN (ENSMICG00000004386) #15	MAP2K1 (ENSMICG00000004393) #16	SNAPC5 (ENSMICG00000004401) #17	RPL4 (ENSMICG00000004419) #18	ZWILCH (ENSMICG00000004429) #19	LCTL (ENSMICG00000004455) #20	SMAD6 (ENSMICG00000035205) #21	SMAD3 (ENSMICG00000006119) #22	AAGAB (ENSMICG00000044554) #23	IQCH (ENSMICG00000006127) #24	ENSMICG00000041604	ENSMICG00000005597	BLOC1S6 (ENSMICG00000005595)	SLC30A4 (ENSMICG00000005588)	C15orf48 (ENSMICG00000033332)	SPATA5L1 (ENSMICG00000035916)	GATM (ENSMICG00000005565)	ENSMICG00000032669	SLC28A2 (ENSMICG00000009242)	SHF (ENSMICG00000033037)	DUOX1 (ENSMICG00000009207)	DUOXA1 (ENSMICG00000009195)	DUOXA2 (ENSMICG00000048012)
Lemuriformes_a	ANCESTRAL SPECIES	197																ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Coquerels sifaka	MODERN SPECIES	733																SMAD3 (ENSPCOG00000023000) #22	AAGAB (ENSPCOG00000016985) #23	IQCH (ENSPCOG00000021949) #24	C15orf61 (ENSPCOG00000018275) #25	MAP2K5 (ENSPCOG00000020293) #26	SKOR1 (ENSPCOG00000016399) #27
Greater bamboo lemur	MODERN SPECIES	313														SMAD6 (ENSPSMG00000000845) #21	ENSPSMG00000000854	SMAD3 (ENSPSMG00000001058) #22	AAGAB (ENSPSMG00000001327) #23	IQCH (ENSPSMG00000001397) #24	C15orf61 (ENSPSMG00000001411) #25	MAP2K5 (ENSPSMG00000001626) #26	SKOR1 (ENSPSMG00000001884) #27	ENSPSMG00000001902	PIAS1 (ENSPSMG00000001932) #28	CALML4 (ENSPSMG00000001943) #30	CLN6 (ENSPSMG00000002045) #31	FEM1B (ENSPSMG00000002150) #32	ITGA11 (ENSPSMG00000002246) #33	CORO2B (ENSPSMG00000002320) #34	ENSPSMG00000002406 #35	SPESP1 (ENSPSMG00000002424) #36	GLCE (ENSPSMG00000002447)
Bushbaby	MODERN SPECIES	126	SLC24A1 (ENSOGAG00000013674) #10	DENND4A (ENSOGAG00000013678) #11	RAB11A (ENSOGAG00000007642) #12	MEGF11 (ENSOGAG00000007644) #13	ENSOGAG00000034665	DIS3L (ENSOGAG00000024086) #14	ENSOGAG00000028488 #15	MAP2K1 (ENSOGAG00000015876) #16	SNAPC5 (ENSOGAG00000015881) #17	ENSOGAG00000015884 ##18	ZWILCH (ENSOGAG00000015886) #19	LCTL (ENSOGAG00000015893) #20	SMAD6 (ENSOGAG00000015387) #21	ENSOGAG00000034467	ENSOGAG00000029245	SMAD3 (ENSOGAG00000014217) #22	AAGAB (ENSOGAG00000014219) #23	IQCH (ENSOGAG00000014224) #24	ENSOGAG00000028206	C15orf61 (ENSOGAG00000027440) #25	MAP2K5 (ENSOGAG00000002480) #26	SKOR1 (ENSOGAG00000025983) #27	PIAS1 (ENSOGAG00000014134) #28	CALML4 (ENSOGAG00000014140) #30	CLN6 (ENSOGAG00000014142) #31	FEM1B (ENSOGAG00000014143) #32	ITGA11 (ENSOGAG00000014144) #33	CORO2B (ENSOGAG00000026008) #34	ENSOGAG00000003058 #35	GLCE (ENSOGAG00000029673)	PAQR5 (ENSOGAG00000012036)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Tree shrew	MODERN SPECIES	3464																SMAD3 (ENSTBEG00000003884) #22	AAGAB (ENSTBEG00000004459) #23	IQCH (ENSTBEG00000005168) #24
Glires	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00950000183167.a.b.a	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d.j	ENSGT00950000183129.b.b	ENSGT00940000154201.a.b
Rabbit	MODERN SPECIES	8	INTS14 (ENSOCUG00000007520) #9	ENSOCUG00000027844 #10	DENND4A (ENSOCUG00000007953) #11	RAB11A (ENSOCUG00000014755) #12	MEGF11 (ENSOCUG00000014760) #13	DIS3L (ENSOCUG00000002206) #14	TIPIN (ENSOCUG00000002212) #15	ENSOCUG00000023060	MAP2K1 (ENSOCUG00000008782) #16	SNAPC5 (ENSOCUG00000039231) #17	ENSOCUG00000008794 #18	ZWILCH (ENSOCUG00000008800) #19	LCTL (ENSOCUG00000021771) #20	ENSOCUG00000006134 #21	ENSOCUG00000014186	SMAD3 (ENSOCUG00000029601) #22	ENSOCUG00000039204	AAGAB (ENSOCUG00000006644) #23	IQCH (ENSOCUG00000006647) #24	MAP2K5 (ENSOCUG00000009024) #26	PIAS1 (ENSOCUG00000000618) #28	CLN6 (ENSOCUG00000017533) #31	FEM1B (ENSOCUG00000026586) #32	ITGA11 (ENSOCUG00000017726) #33	ENSOCUG00000036279	MYO9A (ENSOCUG00000017425)	SENP8 (ENSOCUG00000026054)	GRAMD2A (ENSOCUG00000006107)	ENSOCUG00000006119	PARP6 (ENSOCUG00000004374)	CELF6 (ENSOCUG00000021663)
Pika	MODERN SPECIES	1524														IQCH (ENSOPRG00000014936) #24	SMAD6 (ENSOPRG00000014974) #21	SMAD3 (ENSOPRG00000014996) #22	AAGAB (ENSOPRG00000015012) #23
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Kangaroo rat	MODERN SPECIES	330	Ints14 (ENSDORG00000009309) #9	Slc24a1 (ENSDORG00000007185) #10	Dennd4a (ENSDORG00000002146) #11	ENSDORG00000028034 #12	ENSDORG00000026125	Megf11 (ENSDORG00000001008) #13	Dis3l (ENSDORG00000014909) #14	Tipin (ENSDORG00000028988) #15	Map2k1 (ENSDORG00000001301) #16	Snapc5 (ENSDORG00000030051) #17	Rpl4 (ENSDORG00000016287) #18	Zwilch (ENSDORG00000016288) #19	Lctl (ENSDORG00000016291) #20	Smad6 (ENSDORG00000028234) #21	ENSDORG00000026894	Smad3 (ENSDORG00000029949) #22	ENSDORG00000026611 #23	Iqch (ENSDORG00000006468) #24	2300009A05Rik (ENSDORG00000028687) #25	Map2k5 (ENSDORG00000005673) #26	Skor1 (ENSDORG00000005677) #27
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.kb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Golden Hamster	MODERN SPECIES	672	Dpp8 (ENSMAUG00000020059) #7	Hacd3 (ENSMAUG00000004278) #8	Ints14 (ENSMAUG00000020937) #9	Slc24a1 (ENSMAUG00000012813) #10	Dennd4a (ENSMAUG00000018527) #11	Rab11a (ENSMAUG00000018551) #12	Megf11 (ENSMAUG00000003129) #13	Dis3l (ENSMAUG00000008265) #14	Tipin (ENSMAUG00000012421) #15	Map2k1 (ENSMAUG00000011379) #16	Snapc5 (ENSMAUG00000008645) #17	Rpl4 (ENSMAUG00000018867) #18	Zwilch (ENSMAUG00000021210) #19	Lctl (ENSMAUG00000009957) #20	Smad6 (ENSMAUG00000009859) #21	Smad3 (ENSMAUG00000022258) #22	Aagab (ENSMAUG00000005383) #23	Iqch (ENSMAUG00000004333) #24	Map2k5 (ENSMAUG00000015370) #26	Skor1 (ENSMAUG00000020780) #27	Pias1 (ENSMAUG00000000785) #28	Calml4 (ENSMAUG00000015006) #30	Cln6 (ENSMAUG00000009546) #31	Itga11 (ENSMAUG00000002222) #33	Coro2b (ENSMAUG00000009618) #34	Anp32a (ENSMAUG00000000632) #35	Spesp1 (ENSMAUG00000008837) #36	Glce (ENSMAUG00000013447)	Paqr5 (ENSMAUG00000009377)	Kif23 (ENSMAUG00000009848)	ENSMAUG00000007063
Chinese hamster chok1gshd	MODERN SPECIES	284	Igdcc3 (ENSCGRG00001015803)	Igdcc4 (ENSCGRG00001004819)	Dpp8 (ENSCGRG00001024771) #7	Hacd3 (ENSCGRG00001019214) #8	Ints14 (ENSCGRG00001022061) #9	Slc24a1 (ENSCGRG00001023812) #10	Dennd4a (ENSCGRG00001019979) #11	Rab11a (ENSCGRG00001023313) #12	Megf11 (ENSCGRG00001019210) #13	Dis3l (ENSCGRG00001017825) #14	Tipin (ENSCGRG00001018146) #15	Snapc5 (ENSCGRG00001013968) #17	Zwilch (ENSCGRG00001018206) #19	Lctl (ENSCGRG00001017716) #20	Smad6 (ENSCGRG00001002733) #21	Smad3 (ENSCGRG00001013999) #22	Aagab (ENSCGRG00001020082) #23	Iqch (ENSCGRG00001006084) #24	ENSCGRG00001000811	2300009A05Rik (ENSCGRG00001009275) #25	Map2k5 (ENSCGRG00001024707) #26	Skor1 (ENSCGRG00001000300) #27	Pias1 (ENSCGRG00001018818) #28	Calml4 (ENSCGRG00001023410) #30	Cln6 (ENSCGRG00001016348) #31	Fem1b (ENSCGRG00001018487) #32	Itga11 (ENSCGRG00001016586) #33	Coro2b (ENSCGRG00001025051) #34	ENSCGRG00001022637 #35	Spesp1 (ENSCGRG00001015906) #36	Glce (ENSCGRG00001019156)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Northern American deer mouse	MODERN SPECIES	20	Dpp8 (ENSPEMG00000024195) #7	Hacd3 (ENSPEMG00000008076) #8	Ints14 (ENSPEMG00000008550) #9	Slc24a1 (ENSPEMG00000022814) #10	Dennd4a (ENSPEMG00000022452) #11	ENSPEMG00000021125 #12	Megf11 (ENSPEMG00000017797) #13	Dis3l (ENSPEMG00000001213) #14	Tipin (ENSPEMG00000002370) #15	Map2k1 (ENSPEMG00000007282) #16	Snapc5 (ENSPEMG00000007852) #17	Rpl4 (ENSPEMG00000012064) #18	Zwilch (ENSPEMG00000014485) #19	Lctl (ENSPEMG00000016229) #20	Smad6 (ENSPEMG00000017040) #21	Smad3 (ENSPEMG00000028676) #22	Aagab (ENSPEMG00000018465) #23	ENSPEMG00000028831	Iqch (ENSPEMG00000005753) #24	2300009A05Rik (ENSPEMG00000009306) #25	Map2k5 (ENSPEMG00000010361) #26	Skor1 (ENSPEMG00000010499) #27	Pias1 (ENSPEMG00000012119) #28	Calml4 (ENSPEMG00000012833) #30	Cln6 (ENSPEMG00000030484) #31	ENSPEMG00000000682	Fem1b (ENSPEMG00000028410) #32	Itga11 (ENSPEMG00000014149) #33	Coro2b (ENSPEMG00000016326) #34	Anp32a (ENSPEMG00000017392) #35	ENSPEMG00000017757 #36
Prairie vole	MODERN SPECIES	13	Dpp8 (ENSMOCG00000018103) #7	Hacd3 (ENSMOCG00000004995) #8	Ints14 (ENSMOCG00000020364) #9	Slc24a1 (ENSMOCG00000002968) #10	Dennd4a (ENSMOCG00000008521) #11	Rab11a (ENSMOCG00000021138) #12	Megf11 (ENSMOCG00000003573) #13	Dis3l (ENSMOCG00000005278) #14	Tipin (ENSMOCG00000010343) #15	Map2k1 (ENSMOCG00000013072) #16	Snapc5 (ENSMOCG00000015348) #17	ENSMOCG00000021901 #18	Zwilch (ENSMOCG00000017159) #19	Lctl (ENSMOCG00000004744) #20	Smad6 (ENSMOCG00000014458) #21	Smad3 (ENSMOCG00000018490) #22	Aagab (ENSMOCG00000021340) #23	Iqch (ENSMOCG00000016873) #24	2300009A05Rik (ENSMOCG00000013991) #25	Map2k5 (ENSMOCG00000022058) #26	Skor1 (ENSMOCG00000018261) #27	ENSMOCG00000019235	Pias1 (ENSMOCG00000022074) #28	Calml4 (ENSMOCG00000018493) #30	Cln6 (ENSMOCG00000021992) #31	Fem1b (ENSMOCG00000005442) #32	Itga11 (ENSMOCG00000003119) #33	Coro2b (ENSMOCG00000011097) #34	ENSMOCG00000004428 #35	ENSMOCG00000014776 #35	Spesp1 (ENSMOCG00000016907) #36
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Mus	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Mus_B	ANCESTRAL SPECIES	3	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859.e.b #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Mus_C	ANCESTRAL SPECIES	8	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859.e.b #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
spretus	MODERN SPECIES	18	Hacd3 (MGP_SPRETEiJ_G0033489) #8	Ints14 (MGP_SPRETEiJ_G0033488) #9	Slc24a1 (MGP_SPRETEiJ_G0033487) #10	Dennd4a (MGP_SPRETEiJ_G0033486) #11	Rab11a (MGP_SPRETEiJ_G0033485) #12	Megf11 (MGP_SPRETEiJ_G0033484) #13	Dis3l (MGP_SPRETEiJ_G0033483) #14	Tipin (MGP_SPRETEiJ_G0033482) #15	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #16	Snapc5 (MGP_SPRETEiJ_G0033479) #17	Rpl4 (MGP_SPRETEiJ_G0033478) #18	Zwilch (MGP_SPRETEiJ_G0033477) #19	Lctl (MGP_SPRETEiJ_G0033476) #20	Smad6 (MGP_SPRETEiJ_G0033475) #21	Smad3 (MGP_SPRETEiJ_G0033474) #22	Aagab (MGP_SPRETEiJ_G0033473) #23	Iqch (MGP_SPRETEiJ_G0033472) #24	2300009A05Rik (MGP_SPRETEiJ_G0033471) #25	Map2k5 (MGP_SPRETEiJ_G0033470) #26	Skor1 (MGP_SPRETEiJ_G0033469) #27	Pias1 (MGP_SPRETEiJ_G0033468) #28	Calml4 (MGP_SPRETEiJ_G0033467) #30	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465) #31	Fem1b (MGP_SPRETEiJ_G0033464) #32	Itga11 (MGP_SPRETEiJ_G0033463) #33	Coro2b (MGP_SPRETEiJ_G0033462) #34	Anp32a (MGP_SPRETEiJ_G0033461) #35	Spesp1 (MGP_SPRETEiJ_G0033460) #36	Glce (MGP_SPRETEiJ_G0033459)
Steppe mouse	MODERN SPECIES	3365	Dennd4a (ENSMSIG00000004975) #11	Rab11a (ENSMSIG00000004938) #12	Megf11 (ENSMSIG00000004481) #13	Dis3l (ENSMSIG00000004353) #14	Tipin (ENSMSIG00000004296) #15	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #16	Snapc5 (ENSMSIG00000004231) #17	Rpl4 (ENSMSIG00000004124) #18	Zwilch (ENSMSIG00000003872) #19	Lctl (ENSMSIG00000003776) #20	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #21	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #22	Aagab (ENSMSIG00000003642) #23	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #24	2300009A05Rik (ENSMSIG00000002599) #25	Map2k5 (ENSMSIG00000002321) #26	Skor1 (ENSMSIG00000002179) #27	Pias1 (ENSMSIG00000002027) #28	ENSMSIG00000001996 #30	Cln6 (ENSMSIG00000001974) #31	Fem1b (ENSMSIG00000001951) #32	Itga11 (ENSMSIG00000001884) #33	Coro2b (ENSMSIG00000001799) #34	ENSMSIG00000001693 #35	Spesp1 (ENSMSIG00000001679) #36	Glce (ENSMSIG00000001614)
Mouse	MODERN SPECIES	18	Hacd3 (ENSMUSG00000033629) #8	Ints14 (ENSMUSG00000034263) #9	Slc24a1 (ENSMUSG00000034452) #10	Dennd4a (ENSMUSG00000053641) #11	Rab11a (ENSMUSG00000004771) #12	Megf11 (ENSMUSG00000036466) #13	Dis3l (ENSMUSG00000032396) #14	Tipin (ENSMUSG00000032397) #15	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #16	Snapc5 (ENSMUSG00000032398) #17	Rpl4 (ENSMUSG00000032399) #18	Zwilch (ENSMUSG00000032400) #19	Lctl (ENSMUSG00000032401) #20	Smad6 (ENSMUSG00000036867) #21	Smad3 (ENSMUSG00000032402) #22	Aagab (ENSMUSG00000037257) #23	Iqch (ENSMUSG00000037801) #24	2300009A05Rik (ENSMUSG00000032403) #25	Map2k5 (ENSMUSG00000058444) #26	Skor1 (ENSMUSG00000022245) #27	Pias1 (ENSMUSG00000032405) #28	Calml4 (ENSMUSG00000032246) #30	Cln6 (ENSMUSG00000032245) #31	Fem1b (ENSMUSG00000032244) #32	Itga11 (ENSMUSG00000032243) #33	Coro2b (ENSMUSG00000041729) #34	Anp32a (ENSMUSG00000032249) #35	Spesp1 (ENSMUSG00000046846) #36	Glce (ENSMUSG00000032252)	Paqr5 (ENSMUSG00000032278)
Ryukyu mouse	MODERN SPECIES	18	Hacd3 (MGP_CAROLIEiJ_G0032350) #8	Ints14 (MGP_CAROLIEiJ_G0032349) #9	Slc24a1 (MGP_CAROLIEiJ_G0032348) #10	Dennd4a (MGP_CAROLIEiJ_G0032347) #11	Rab11a (MGP_CAROLIEiJ_G0032346) #12	Megf11 (MGP_CAROLIEiJ_G0032345) #13	Dis3l (MGP_CAROLIEiJ_G0032344) #14	Tipin (MGP_CAROLIEiJ_G0032343) #15	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #16	Snapc5 (MGP_CAROLIEiJ_G0032340) #17	Rpl4 (MGP_CAROLIEiJ_G0032339) #18	Zwilch (MGP_CAROLIEiJ_G0032338) #19	Lctl (MGP_CAROLIEiJ_G0032337) #20	Smad6 (MGP_CAROLIEiJ_G0032336) #21	Smad3 (MGP_CAROLIEiJ_G0032335) #22	Aagab (MGP_CAROLIEiJ_G0032334) #23	Iqch (MGP_CAROLIEiJ_G0032333) #24	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #25	Map2k5 (MGP_CAROLIEiJ_G0032331) #26	Skor1 (MGP_CAROLIEiJ_G0032330) #27	Pias1 (MGP_CAROLIEiJ_G0032329) #28	Calml4 (MGP_CAROLIEiJ_G0032328) #30	Cln6 (MGP_CAROLIEiJ_G0032327) #31	Fem1b (MGP_CAROLIEiJ_G0032326) #32	Itga11 (MGP_CAROLIEiJ_G0032325) #33	Coro2b (MGP_CAROLIEiJ_G0032324) #34	Anp32a (MGP_CAROLIEiJ_G0032323) #35	Spesp1 (MGP_CAROLIEiJ_G0032322) #36	Glce (MGP_CAROLIEiJ_G0032321)	Paqr5 (MGP_CAROLIEiJ_G0032320)
Shrew mouse	MODERN SPECIES	1	Igdcc4 (MGP_PahariEiJ_G0015217)	Dpp8 (MGP_PahariEiJ_G0015216) #7	Hacd3 (MGP_PahariEiJ_G0015215) #8	Ints14 (MGP_PahariEiJ_G0015214) #9	Slc24a1 (MGP_PahariEiJ_G0015213) #10	Dennd4a (MGP_PahariEiJ_G0015212) #11	Rab11a (MGP_PahariEiJ_G0015211) #12	Megf11 (MGP_PahariEiJ_G0015210) #13	Dis3l (MGP_PahariEiJ_G0015209) #14	Tipin (MGP_PahariEiJ_G0015208) #15	Map2k1 (MGP_PahariEiJ_G0015207) #16	Snapc5 (MGP_PahariEiJ_G0015206) #17	Rpl4 (MGP_PahariEiJ_G0015205) #18	Zwilch (MGP_PahariEiJ_G0015204) #19	Smad6 (MGP_PahariEiJ_G0015202) #21	Smad3 (MGP_PahariEiJ_G0015201) #22	Aagab (MGP_PahariEiJ_G0015200) #23	Iqch (MGP_PahariEiJ_G0015199) #24	2300009A05Rik (MGP_PahariEiJ_G0015198) #25	Map2k5 (MGP_PahariEiJ_G0015197) #26	Skor1 (MGP_PahariEiJ_G0015196) #27	Pias1 (MGP_PahariEiJ_G0015195) #28	Calml4 (MGP_PahariEiJ_G0015194) #30	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192) #32	Itga11 (MGP_PahariEiJ_G0015191) #33	Coro2b (MGP_PahariEiJ_G0015190) #34	Anp32a (MGP_PahariEiJ_G0015189) #35	Spesp1 (MGP_PahariEiJ_G0015188) #36	Glce (MGP_PahariEiJ_G0015187)	Paqr5 (MGP_PahariEiJ_G0015186)
Rat	MODERN SPECIES	18	Dpp8 (ENSRNOG00000019105) #7	Hacd3 (ENSRNOG00000030232) #8	Ints14 (ENSRNOG00000012469) #9	Slc24a1 (ENSRNOG00000052051) #10	Dennd4a (ENSRNOG00000011739) #11	LOC120094392 (ENSRNOG00000071140)	Rab11a (ENSRNOG00000011302) #12	Megf11 (ENSRNOG00000010634) #13	Dis3l (ENSRNOG00000010537) #14	Tipin (ENSRNOG00000043068) #15	Map2k1 (ENSRNOG00000010176) #16	Rpl4 (ENSRNOG00000009378) #18	Zwilch (ENSRNOG00000009303) #19	Lctl (ENSRNOG00000009193) #20	Smad6 (ENSRNOG00000009173) #21	Smad3 (ENSRNOG00000008620) #22	Aagab (ENSRNOG00000008424) #23	Iqch (ENSRNOG00000008353) #24	C8h15orf61 (ENSRNOG00000008340) #25	AC132740.1 (ENSRNOG00000054780)	Map2k5 (ENSRNOG00000007926) #26	Skor1 (ENSRNOG00000013959) #27	Pias1 (ENSRNOG00000034272) #28	Calml4 (ENSRNOG00000038202) #30	Cln6 (ENSRNOG00000007164) #31	Fem1b (ENSRNOG00000007077) #32	Itga11 (ENSRNOG00000006723) #33	Coro2b (ENSRNOG00000015257) #34	Anp32a (ENSRNOG00000014846) #35	Spesp1 (ENSRNOG00000025359) #36	Glce (ENSRNOG00000025372)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Hacd3 (ENSNGAG00000016924) #8	Ints14 (ENSNGAG00000007105) #9	Slc24a1 (ENSNGAG00000010674) #10	ENSNGAG00000022619 #11	Rab11a (ENSNGAG00000013726) #12	Megf11 (ENSNGAG00000011352) #13	Dis3l (ENSNGAG00000017008) #14	Tipin (ENSNGAG00000018237) #15	Map2k1 (ENSNGAG00000006894) #16	Snapc5 (ENSNGAG00000006133) #17	ENSNGAG00000006653 #18	Zwilch (ENSNGAG00000016626) #19	Lctl (ENSNGAG00000012911) #20	Smad6 (ENSNGAG00000021223) #21	ENSNGAG00000022756	Smad3 (ENSNGAG00000023535) #22	ENSNGAG00000010708 #23	Iqch (ENSNGAG00000019505) #24	2300009A05Rik (ENSNGAG00000004715) #25	Map2k5 (ENSNGAG00000011076) #26	Skor1 (ENSNGAG00000020060) #27	Pias1 (ENSNGAG00000022735) #28	Calml4 (ENSNGAG00000016088) #30	Cln6 (ENSNGAG00000023832) #31	ENSNGAG00000021620 #32	Itga11 (ENSNGAG00000024101) #33	Coro2b (ENSNGAG00000024331) #34	ENSNGAG00000017524 #35	ENSNGAG00000005322 #35	Spesp1 (ENSNGAG00000012498) #36	Glce (ENSNGAG00000014759)
Lesser Egyptian jerboa	MODERN SPECIES	92	Hacd3 (ENSJJAG00000016608) #8	Ints14 (ENSJJAG00000005359) #9	Slc24a1 (ENSJJAG00000009344) #10	ENSJJAG00000012113 #11	ENSJJAG00000015445 #12	Megf11 (ENSJJAG00000023890) #13	ENSJJAG00000019234	Dis3l (ENSJJAG00000016147) #14	Tipin (ENSJJAG00000017947) #15	Map2k1 (ENSJJAG00000021452) #16	Snapc5 (ENSJJAG00000022013) #17	ENSJJAG00000013677 #18	Zwilch (ENSJJAG00000010189) #19	Lctl (ENSJJAG00000013579) #20	Smad6 (ENSJJAG00000019623) #21	Smad3 (ENSJJAG00000021414) #22	ENSJJAG00000018312 #23	Iqch (ENSJJAG00000024416) #24	2300009A05Rik (ENSJJAG00000019436) #25	Map2k5 (ENSJJAG00000024208) #26	Skor1 (ENSJJAG00000003624) #27	ENSJJAG00000019728 #28	Calml4 (ENSJJAG00000014113) #30	Cln6 (ENSJJAG00000024405) #31	Fem1b (ENSJJAG00000018686) #32	Itga11 (ENSJJAG00000007244) #33	Coro2b (ENSJJAG00000003058) #34	Anp32a (ENSJJAG00000019278) #35
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.vb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Naked mole-rat female	MODERN SPECIES	19	INTS14 (ENSHGLG00000010722) #9	SLC24A1 (ENSHGLG00000008872) #10	DENND4A (ENSHGLG00000009810) #11	ENSHGLG00000044288	RAB11A (ENSHGLG00000048551) #12	MEGF11 (ENSHGLG00000011012) #13	ENSHGLG00000007770 #14	ENSHGLG00000005971 #15	ENSHGLG00000048822	ENSHGLG00000010036 #16	ENSHGLG00000040904 #17	ENSHGLG00000008054 #18	ZWILCH (ENSHGLG00000016059) #19	LCTL (ENSHGLG00000015669) #20	SMAD6 (ENSHGLG00000008453) #21	SMAD3 (ENSHGLG00000048787) #22	AAGAB (ENSHGLG00000038898) #23	ENSHGLG00000026352 #24	C15orf61 (ENSHGLG00000038870) #25	MAP2K5 (ENSHGLG00000006627) #26	SKOR1 (ENSHGLG00000017297) #27	Pias1 (ENSHGLG00000019002) #28	Calml4 (ENSHGLG00000018794) #30	CLN6 (ENSHGLG00000017958) #31	FEM1B (ENSHGLG00000017948) #32	ITGA11 (ENSHGLG00000007233) #33	CORO2B (ENSHGLG00000015273) #34	ENSHGLG00000013229 #35	SPESP1 (ENSHGLG00000046924) #36	GLCE (ENSHGLG00000033764)	PAQR5 (ENSHGLG00000009727)
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.vb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Guinea pig	MODERN SPECIES		CIAO2A (ENSCPOG00000033175)	DAPK2 (ENSCPOG00000000890)	ENSCPOG00000030019	ENSCPOG00000007146	PTP4A1 (ENSCPOG00000032105)	LGSN (ENSCPOG00000008736)	KHDRBS2 (ENSCPOG00000025621)	PRIM2 (ENSCPOG00000003912)	ENSCPOG00000035048	RAB23 (ENSCPOG00000030218)	BAG2 (ENSCPOG00000040302)	ZNF451 (ENSCPOG00000002491)	BEND6 (ENSCPOG00000015453)	DST (ENSCPOG00000005092)	SMAD6 (ENSCPOG00000001535) #21	SMAD3 (ENSCPOG00000021314) #22	AAGAB (ENSCPOG00000000965) #23	C15orf61 (ENSCPOG00000022542) #25	MAP2K5 (ENSCPOG00000000970) #26	SKOR1 (ENSCPOG00000012665) #27	PIAS1 (ENSCPOG00000007278) #28	CALML4 (ENSCPOG00000033517) #30	CLN6 (ENSCPOG00000007282) #31	FEM1B (ENSCPOG00000031057) #32	ITGA11 (ENSCPOG00000012877) #33	CORO2B (ENSCPOG00000023117) #34	ENSCPOG00000008829 #35	GLCE (ENSCPOG00000020608)
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.vb #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00390000006043	ENSGT00940000158844
Degu	MODERN SPECIES	67	DPP8 (ENSODEG00000016356) #7	HACD3 (ENSODEG00000016975) #8	INTS14 (ENSODEG00000017006) #9	SLC24A1 (ENSODEG00000016047) #10	ENSODEG00000016544 #11	ENSODEG00000016435	ENSODEG00000016878 #12	MEGF11 (ENSODEG00000015967) #13	DIS3L (ENSODEG00000015811) #14	MAP2K1 (ENSODEG00000016739) #16	ENSODEG00000016495 #18	ZWILCH (ENSODEG00000016374) #19	LCTL (ENSODEG00000016271) #20	ENSODEG00000020317	SMAD6 (ENSODEG00000016272) #21	SMAD3 (ENSODEG00000015739) #22	ENSODEG00000015886 #23	ENSODEG00000020336	IQCH (ENSODEG00000016134) #24	C15orf61 (ENSODEG00000016721) #25	ENSODEG00000016511	MAP2K5 (ENSODEG00000015607) #26	SKOR1 (ENSODEG00000015903) #27	PIAS1 (ENSODEG00000016418) #28	CALML4 (ENSODEG00000015441) #30	CLN6 (ENSODEG00000015888) #31	ENSODEG00000016475 #32	ENSODEG00000020366	ITGA11 (ENSODEG00000015700) #33	CORO2B (ENSODEG00000016099) #34	ENSODEG00000016071 #35
Long-tailed chinchilla	MODERN SPECIES	157	DPP8 (ENSCLAG00000014937) #7	HACD3 (ENSCLAG00000010725) #8	INTS14 (ENSCLAG00000009395) #9	SLC24A1 (ENSCLAG00000013073) #10	DENND4A (ENSCLAG00000007003) #11	RAB11A (ENSCLAG00000007435) #12	MEGF11 (ENSCLAG00000013146) #13	DIS3L (ENSCLAG00000005741) #14	TIPIN (ENSCLAG00000004924) #15	MAP2K1 (ENSCLAG00000013042) #16	SNAPC5 (ENSCLAG00000011660) #17	RPL4 (ENSCLAG00000010827) #18	ZWILCH (ENSCLAG00000010124) #19	LCTL (ENSCLAG00000004564) #20	ENSCLAG00000005550 #21	SMAD3 (ENSCLAG00000005027) #22	AAGAB (ENSCLAG00000008364) #23	IQCH (ENSCLAG00000011031) #24	C15orf61 (ENSCLAG00000008894) #25	MAP2K5 (ENSCLAG00000005277) #26	SKOR1 (ENSCLAG00000007488) #27	PIAS1 (ENSCLAG00000008129) #28	CALML4 (ENSCLAG00000008707) #30	CLN6 (ENSCLAG00000007035) #31	FEM1B (ENSCLAG00000004834) #32	ITGA11 (ENSCLAG00000006568) #33	CORO2B (ENSCLAG00000006658) #34	ENSCLAG00000010256 #35	SPESP1 (ENSCLAG00000009992) #36	GLCE (ENSCLAG00000009057)	PAQR5 (ENSCLAG00000008730)
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Alpin marmot	MODERN SPECIES	7	SLC24A1 (ENSMMMG00000006817) #10	DENND4A (ENSMMMG00000006769) #11	ENSMMMG00000006762	RAB11A (ENSMMMG00000006747) #12	MEGF11 (ENSMMMG00000006311) #13	DIS3L (ENSMMMG00000006220) #14	TIPIN (ENSMMMG00000006196) #15	MAP2K1 (ENSMMMG00000006173) #16	SNAPC5 (ENSMMMG00000006163) #17	RPL4 (ENSMMMG00000006109) #18	ENSMMMG00000006104	ZWILCH (ENSMMMG00000006077) #19	LCTL (ENSMMMG00000006061) #20	SMAD6 (ENSMMMG00000006032) #21	ENSMMMG00000006027	SMAD3 (ENSMMMG00000005977) #22	AAGAB (ENSMMMG00000005970) #23	IQCH (ENSMMMG00000005869) #24	ENSMMMG00000005844	MAP2K5 (ENSMMMG00000005809) #26	SKOR1 (ENSMMMG00000005773) #27	PIAS1 (ENSMMMG00000005733) #28	CALML4 (ENSMMMG00000005699) #30	CLN6 (ENSMMMG00000005687) #31	ENSMMMG00000005671 #32	ITGA11 (ENSMMMG00000005622) #33	CORO2B (ENSMMMG00000005600) #34	ENSMMMG00000005555 #35	SPESP1 (ENSMMMG00000005545) #36	NOX5 (ENSMMMG00000005478)	GLCE (ENSMMMG00000005432)
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Arctic ground squirrel	MODERN SPECIES	397									MAP2K1 (ENSUPAG00010018149) #16	SNAPC5 (ENSUPAG00010018142) #17	RPL4 (ENSUPAG00010018119) #18	ZWILCH (ENSUPAG00010018079) #19	LCTL (ENSUPAG00010018063) #20	SMAD6 (ENSUPAG00010018050) #21	ENSUPAG00010018048	SMAD3 (ENSUPAG00010018010) #22	AAGAB (ENSUPAG00010018001) #23	IQCH (ENSUPAG00010017914) #24	C15orf61 (ENSUPAG00010017904) #25	MAP2K5 (ENSUPAG00010017819) #26	SKOR1 (ENSUPAG00010017792) #27	ENSUPAG00010017781	PIAS1 (ENSUPAG00010017772) #28	CALML4 (ENSUPAG00010017747) #30	CLN6 (ENSUPAG00010017740) #31	FEM1B (ENSUPAG00010017736) #32	ITGA11 (ENSUPAG00010017705) #33
Squirrel	MODERN SPECIES	71	ENSSTOG00000025872	HACD3 (ENSSTOG00000002211) #8	INTS14 (ENSSTOG00000002217) #9	SLC24A1 (ENSSTOG00000002228) #10	DENND4A (ENSSTOG00000026966) #11	RAB11A (ENSSTOG00000015255) #12	MEGF11 (ENSSTOG00000015258) #13	DIS3L (ENSSTOG00000009158) #14	TIPIN (ENSSTOG00000009182) #15	MAP2K1 (ENSSTOG00000009190) #16	SNAPC5 (ENSSTOG00000009201) #17	RPL4 (ENSSTOG00000009221) #18	ZWILCH (ENSSTOG00000009607) #19	LCTL (ENSSTOG00000028073) #20	SMAD6 (ENSSTOG00000000696) #21	SMAD3 (ENSSTOG00000010286) #22	AAGAB (ENSSTOG00000010291) #23	IQCH (ENSSTOG00000010299) #24	C15orf61 (ENSSTOG00000010312) #25	MAP2K5 (ENSSTOG00000010318) #26	SKOR1 (ENSSTOG00000002675) #27	PIAS1 (ENSSTOG00000015532) #28	CALML4 (ENSSTOG00000015539) #30	CLN6 (ENSSTOG00000015540) #31	FEM1B (ENSSTOG00000015544) #32	ITGA11 (ENSSTOG00000015545) #33	CORO2B (ENSSTOG00000015918) #34	ENSSTOG00000015929 #35	GLCE (ENSSTOG00000019509)	PAQR5 (ENSSTOG00000000507)	KIF23 (ENSSTOG00000022809)
Eurasian red squirrel	MODERN SPECIES	11	HACD3 (ENSSVLG00005023708) #8	INTS14 (ENSSVLG00005023820) #9	SLC24A1 (ENSSVLG00005023979) #10	DENND4A (ENSSVLG00005024160) #11	RAB11A (ENSSVLG00005024246) #12	MEGF11 (ENSSVLG00005024351) #13	DIS3L (ENSSVLG00005024622) #14	TIPIN (ENSSVLG00005024668) #15	MAP2K1 (ENSSVLG00005024707) #16	SNAPC5 (ENSSVLG00005024729) #17	ENSSVLG00005024744 #18	ZWILCH (ENSSVLG00005024833) #19	LCTL (ENSSVLG00005024912) #20	SMAD6 (ENSSVLG00005024946) #21	ENSSVLG00005024968	SMAD3 (ENSSVLG00005024991) #22	AAGAB (ENSSVLG00005025018) #23	IQCH (ENSSVLG00005025085) #24	C15orf61 (ENSSVLG00005006592) #25	MAP2K5 (ENSSVLG00005006656) #26	SKOR1 (ENSSVLG00005006917) #27	PIAS1 (ENSSVLG00005007019) #28	CALML4 (ENSSVLG00005007109) #30	CLN6 (ENSSVLG00005007215) #31	FEM1B (ENSSVLG00005007302) #32	ITGA11 (ENSSVLG00005007326) #33	CORO2B (ENSSVLG00005007364) #34	ENSSVLG00005007452 #35	ENSSVLG00005007513	SPESP1 (ENSSVLG00005007565) #36	NOX5 (ENSSVLG00005007597)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.db.a #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Equus	ANCESTRAL SPECIES	4	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.eb #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Horse	MODERN SPECIES		IGDCC4 (ENSECAG00000024668)	DPP8 (ENSECAG00000010846) #7	HACD3 (ENSECAG00000023082) #8	INTS14 (ENSECAG00000018884) #9	SLC24A1 (ENSECAG00000013327) #10	DENND4A (ENSECAG00000024306) #11	RAB11A (ENSECAG00000023865) #12	MEGF11 (ENSECAG00000000706) #13	DIS3L (ENSECAG00000007302) #14	TIPIN (ENSECAG00000004590) #15	MAP2K1 (ENSECAG00000010640) #16	RPL4 (ENSECAG00000023179) #18	ZWILCH (ENSECAG00000018367) #19	LCTL (ENSECAG00000014254) #20	SMAD6 (ENSECAG00000013706) #21	SMAD3 (ENSECAG00000020259) #22	ENSECAG00000047849 #24	AAGAB (ENSECAG00000013142) #23	IQCH (ENSECAG00000007674) #24	ENSECAG00000029823	MAP2K5 (ENSECAG00000022411) #26	SKOR1 (ENSECAG00000036584) #27	ENSECAG00000005747	PIAS1 (ENSECAG00000007993) #28	CALML4 (ENSECAG00000021844) #30	CLN6 (ENSECAG00000016991) #31	FEM1B (ENSECAG00000015587)	ITGA11 (ENSECAG00000023104) #33	CORO2B (ENSECAG00000014020) #34	ENSECAG00000002541 #35	SPESP1 (ENSECAG00000002377) #36
Donkey	MODERN SPECIES	11	DPP8 (ENSEASG00005006459) #7	HACD3 (ENSEASG00005006456) #8	INTS14 (ENSEASG00005006454) #9	SLC24A1 (ENSEASG00005006448) #10	DENND4A (ENSEASG00005006437) #11	RAB11A (ENSEASG00005006431) #12	MEGF11 (ENSEASG00005006429) #13	DIS3L (ENSEASG00005006407) #14	TIPIN (ENSEASG00005006396) #15	MAP2K1 (ENSEASG00005006387) #16	SNAPC5 (ENSEASG00005006384) #17	RPL4 (ENSEASG00005006373) #18	ZWILCH (ENSEASG00005006339) #19	LCTL (ENSEASG00005006319) #20	ENSEASG00005025450 #21	SMAD3 (ENSEASG00005006315) #22	AAGAB (ENSEASG00005006311) #23	IQCH (ENSEASG00005006301) #24	ENSEASG00005006297 #25	MAP2K5 (ENSEASG00005006290) #26	SKOR1 (ENSEASG00005006277) #27	ENSEASG00005006267	PIAS1 (ENSEASG00005006262) #28	CALML4 (ENSEASG00005033729) #30	CLN6 (ENSEASG00005034200) #31	FEM1B (ENSEASG00005006255) #32	ITGA11 (ENSEASG00005006251) #33	CORO2B (ENSEASG00005006245) #34	ENSEASG00005006243 #35	SPESP1 (ENSEASG00005028304) #36	NOX5 (ENSEASG00005006228)
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.db.a #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465.h #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Megabat	MODERN SPECIES	3284																SMAD3 (ENSPVAG00000002626) #22	AAGAB (ENSPVAG00000002627) #23	IQCH (ENSPVAG00000002628) #24
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.db.a #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147041	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465.h #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Greater horseshoe bat	MODERN SPECIES	24	HACD3 (ENSRFEG00010004527) #8	INTS14 (ENSRFEG00010004454) #9	SLC24A1 (ENSRFEG00010004368) #10	DENND4A (ENSRFEG00010004242) #11	ENSRFEG00010004168 #12	MEGF11 (ENSRFEG00010004126) #13	DIS3L (ENSRFEG00010004058) #14	TIPIN (ENSRFEG00010004026) #15	MAP2K1 (ENSRFEG00010004010) #16	SNAPC5 (ENSRFEG00010003999) #17	ENSRFEG00010003980 #18	ZWILCH (ENSRFEG00010003952) #19	LCTL (ENSRFEG00010003917) #20	ENSRFEG00010003900	SMAD6 (ENSRFEG00010003887) #21	SMAD3 (ENSRFEG00010003872) #22	AAGAB (ENSRFEG00010003850) #23	IQCH (ENSRFEG00010003782) #24	MAP2K5 (ENSRFEG00010003624) #26	SKOR1 (ENSRFEG00010003500) #27	ENSRFEG00010003474	ENSRFEG00010003431 #28	ENSRFEG00010003398 #30	CLN6 (ENSRFEG00010003356) #31	FEM1B (ENSRFEG00010003282) #32	ITGA11 (ENSRFEG00010003262) #33	CORO2B (ENSRFEG00010003225) #34	ENSRFEG00010003201 #35	SPESP1 (ENSRFEG00010003175) #36	ENSRFEG00010003165	GLCE (ENSRFEG00010003151)
Microbat	MODERN SPECIES	1275																SMAD3 (ENSMLUG00000002185) #22	AAGAB (ENSMLUG00000002191) #23	IQCH (ENSMLUG00000002192) #24	C15orf61 (ENSMLUG00000029534) #25	MAP2K5 (ENSMLUG00000002205) #26	PIAS1 (ENSMLUG00000010321) #28	CALML4 (ENSMLUG00000010350) #30	CLN6 (ENSMLUG00000008964) #31	FEM1B (ENSMLUG00000008987) #32	ITGA11 (ENSMLUG00000008993) #33
Carnivora	ANCESTRAL SPECIES		ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Canidae	ANCESTRAL SPECIES	15	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00950000185603	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218.m #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00940000153533.a.m.b.b
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.lc.a #18	ENSGT00390000013696 #19	ENSGT00950000185603	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218.m #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00940000153533.a.m.b.b
Dingo	MODERN SPECIES	205	DPP8 (ENSCAFG00020008685) #7	HACD3 (ENSCAFG00020008678) #8	INTS14 (ENSCAFG00020008669) #9	SLC24A1 (ENSCAFG00020008562) #10	DENND4A (ENSCAFG00020008501) #11	RAB11A (ENSCAFG00020008478) #12	MEGF11 (ENSCAFG00020008443) #13	DIS3L (ENSCAFG00020008413) #14	TIPIN (ENSCAFG00020008398) #15	MAP2K1 (ENSCAFG00020008392) #16	SNAPC5 (ENSCAFG00020008387) #17	ENSCAFG00020008355 #18	ZWILCH (ENSCAFG00020008215) #19	LCTL (ENSCAFG00020008195) #20	SMAD6 (ENSCAFG00020008193) #21	SMAD3 (ENSCAFG00020008177) #22	ENSCAFG00020008170 #23	IQCH (ENSCAFG00020008118) #24	C15orf61 (ENSCAFG00020008094) #25	MAP2K5 (ENSCAFG00020008071) #26	SKOR1 (ENSCAFG00020008049) #27	PIAS1 (ENSCAFG00020008026) #28	CALML4 (ENSCAFG00020008020) #30	CLN6 (ENSCAFG00020008011) #31	FEM1B (ENSCAFG00020008006) #32	ITGA11 (ENSCAFG00020007730) #33	CORO2B (ENSCAFG00020007691) #34	ENSCAFG00020007674	ENSCAFG00020007670 #35	SPESP1 (ENSCAFG00020007667) #36	NOX5 (ENSCAFG00020007565)
Dog	MODERN SPECIES	23	INTS14 (ENSCAFG00845026081) #9	SLC24A1 (ENSCAFG00845026323) #10	DENND4A (ENSCAFG00845026536) #11	RAB11A (ENSCAFG00845027320) #12	ENSCAFG00845014976 #13	DIS3L (ENSCAFG00845015076) #14	TIPIN (ENSCAFG00845015229) #15	ENSCAFG00845015268	MAP2K1 (ENSCAFG00845015371) #16	SNAPC5 (ENSCAFG00845015512) #17	RPL4 (ENSCAFG00845015609) #18	ZWILCH (ENSCAFG00845015845) #19	ENSCAFG00845016122	LCTL (ENSCAFG00845016168) #20	SMAD6 (ENSCAFG00845016415) #21	SMAD3 (ENSCAFG00845016639) #22	AAGAB (ENSCAFG00845016886) #23	IQCH (ENSCAFG00845017088) #24	C15orf61 (ENSCAFG00845017380) #25	MAP2K5 (ENSCAFG00845017514) #26	SKOR1 (ENSCAFG00845017976) #27	PIAS1 (ENSCAFG00845018319) #28	CALML4 (ENSCAFG00845018790) #30	CLN6 (ENSCAFG00845018935) #31	FEM1B (ENSCAFG00845019340) #32	ITGA11 (ENSCAFG00845019410) #33	CORO2B (ENSCAFG00845019590) #34	ANP32A (ENSCAFG00845019800) #35	SPESP1 (ENSCAFG00845019873) #36	NOX5 (ENSCAFG00845020023)	ENSCAFG00845020567
Red fox	MODERN SPECIES		SLC24A1 (ENSVVUG00000014313) #10	DENND4A (ENSVVUG00000014392) #11	RAB11A (ENSVVUG00000014435) #12	MEGF11 (ENSVVUG00000014448) #13	DIS3L (ENSVVUG00000014492) #14	TIPIN (ENSVVUG00000014501) #15	MAP2K1 (ENSVVUG00000014514) #16	SNAPC5 (ENSVVUG00000014527) #17	ENSVVUG00000014531 #18	ZWILCH (ENSVVUG00000014559) #19	ENSVVUG00000014578	LCTL (ENSVVUG00000014585) #20	ENSVVUG00000014612	ENSVVUG00000014615	SMAD6 (ENSVVUG00000014625) #21	SMAD3 (ENSVVUG00000014647) #22	AAGAB (ENSVVUG00000014658) #23	IQCH (ENSVVUG00000014665) #24	C15orf61 (ENSVVUG00000014693) #25	MAP2K5 (ENSVVUG00000014703) #26	ENSVVUG00000014708 #27	PIAS1 (ENSVVUG00000014713) #28	ENSVVUG00000014716 #30	CLN6 (ENSVVUG00000014717) #31	FEM1B (ENSVVUG00000014718) #32	ITGA11 (ENSVVUG00000014719) #33	CORO2B (ENSVVUG00000014724) #34	ANP32A (ENSVVUG00000014726) #35	SPESP1 (ENSVVUG00000014730) #36	NOX5 (ENSVVUG00000014734)	ENSVVUG00000014756
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Ursidae	ANCESTRAL SPECIES	21	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B.p #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Giant Panda	MODERN SPECIES	15	DPP8 (ENSAMEG00000002924) #7	HACD3 (ENSAMEG00000002983) #8	INTS14 (ENSAMEG00000003002) #9	SLC24A1 (ENSAMEG00000003029) #10	DENND4A (ENSAMEG00000003046) #11	RAB11A (ENSAMEG00000003119) #12	MEGF11 (ENSAMEG00000003131) #13	DIS3L (ENSAMEG00000003166) #14	TIPIN (ENSAMEG00000027725) #15	MAP2K1 (ENSAMEG00000003218) #16	SNAPC5 (ENSAMEG00000003249) #17	ENSAMEG00000029170 #18	ZWILCH (ENSAMEG00000003251) #19	LCTL (ENSAMEG00000003300) #20	SMAD6 (ENSAMEG00000029979) #21	SMAD3 (ENSAMEG00000003318) #22	AAGAB (ENSAMEG00000028433) #23	IQCH (ENSAMEG00000005044) #24	C15orf61 (ENSAMEG00000029099) #25	MAP2K5 (ENSAMEG00000005013) #26	SKOR1 (ENSAMEG00000004996) #27	PIAS1 (ENSAMEG00000014025) #28	CALML4 (ENSAMEG00000014054) #30	CLN6 (ENSAMEG00000014058) #31	FEM1B (ENSAMEG00000014073) #32	ITGA11 (ENSAMEG00000014076) #33	CORO2B (ENSAMEG00000014093) #34	ENSAMEG00000014117 #35	SPESP1 (ENSAMEG00000014134) #36	NOX5 (ENSAMEG00000014136)	ENSAMEG00000020008
Ursus	ANCESTRAL SPECIES	37	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B.p #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
American black bear	MODERN SPECIES	83															SMAD6 (ENSUAMG00000020556) #21	SMAD3 (ENSUAMG00000020554) #22	AAGAB (ENSUAMG00000020553) #23	IQCH (ENSUAMG00000020552) #24	C15orf61 (ENSUAMG00000020551) #25
Polar bear	MODERN SPECIES	320	IGDCC3 (ENSUMAG00000012461)	ENSUMAG00000012451	DPP8 (ENSUMAG00000012441) #7	HACD3 (ENSUMAG00000012379) #8	INTS14 (ENSUMAG00000012368) #9	SLC24A1 (ENSUMAG00000012325) #10	DENND4A (ENSUMAG00000012290) #11	RAB11A (ENSUMAG00000012273) #12	MEGF11 (ENSUMAG00000012242) #13	DIS3L (ENSUMAG00000012227) #14	TIPIN (ENSUMAG00000012215) #15	MAP2K1 (ENSUMAG00000012208) #16	RPL4 (ENSUMAG00000012178) #18	ZWILCH (ENSUMAG00000012145) #19	LCTL (ENSUMAG00000012072) #20	ENSUMAG00000012057 #22	AAGAB (ENSUMAG00000012048) #23	IQCH (ENSUMAG00000012020) #24	C15orf61 (ENSUMAG00000012016) #25	MAP2K5 (ENSUMAG00000011992) #26	ENSUMAG00000011983	PIAS1 (ENSUMAG00000011980) #28	CALML4 (ENSUMAG00000011979) #30	ENSUMAG00000011962 #31	FEM1B (ENSUMAG00000011958) #32	ITGA11 (ENSUMAG00000011792) #33	CORO2B (ENSUMAG00000011755) #34	ENSUMAG00000011740 #35	ENSUMAG00000011724	SPESP1 (ENSUMAG00000011718) #36	NOX5 (ENSUMAG00000011648)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
American mink	MODERN SPECIES	46	DPP8 (ENSNVIG00000017340) #7	HACD3 (ENSNVIG00000017259) #8	CO044 (ENSNVIG00000017199) #9	SLC24A1 (ENSNVIG00000017089) #10	DENND4A (ENSNVIG00000016862) #11	RAB11A (ENSNVIG00000016821) #12	MEGF11 (ENSNVIG00000016583) #13	DIS3L (ENSNVIG00000016535) #14	TIPIN (ENSNVIG00000016513) #15	MAP2K1 (ENSNVIG00000016498) #16	SNAPC5 (ENSNVIG00000016483) #17	RPL4 (ENSNVIG00000016412) #18	ZWILC (ENSNVIG00000016326) #19	LCTL (ENSNVIG00000016282) #20	SMAD6 (ENSNVIG00000016271) #21	SMAD3 (ENSNVIG00000016249) #22	AAGAB (ENSNVIG00000016212) #23	IQCH (ENSNVIG00000016136) #24	MP2K5 (ENSNVIG00000015958) #26	SKOR1 (ENSNVIG00000015923) #27	PIAS1 (ENSNVIG00000015868) #28	CALML4 (ENSNVIG00000015844) #30	CLN6 (ENSNVIG00000015741) #31	FEM1B (ENSNVIG00000015730) #32	ITGA11 (ENSNVIG00000015665) #33	ENSNVIG00000015659	CORO2B (ENSNVIG00000015623) #34	ENSNVIG00000015596 #35	ENSNVIG00000015562	SPESP1 (ENSNVIG00000015552) #36	NOX5 (ENSNVIG00000015522)
Ferret	MODERN SPECIES	228	HACD3 (ENSMPUG00000000475) #8	INTS14 (ENSMPUG00000000472) #9	SLC24A1 (ENSMPUG00000000468) #10	DENND4A (ENSMPUG00000000388) #11	RAB11A (ENSMPUG00000000387) #12	MEGF11 (ENSMPUG00000000383) #13	DIS3L (ENSMPUG00000000378) #14	TIPIN (ENSMPUG00000000365) #15	MAP2K1 (ENSMPUG00000000363) #16	SNAPC5 (ENSMPUG00000000356) #17	ENSMPUG00000000337 #18	ZWILCH (ENSMPUG00000000333) #19	LCTL (ENSMPUG00000000312) #20	ENSMPUG00000000309	SMAD6 (ENSMPUG00000000307) #21	SMAD3 (ENSMPUG00000000304) #22	AAGAB (ENSMPUG00000000292) #23	IQCH (ENSMPUG00000000289) #24	C15orf61 (ENSMPUG00000000287) #25	MAP2K5 (ENSMPUG00000000285) #26	SKOR1 (ENSMPUG00000000283) #27	PIAS1 (ENSMPUG00000000281) #28	CALML4 (ENSMPUG00000000270) #30	CLN6 (ENSMPUG00000000267) #31	FEM1B (ENSMPUG00000000266) #32	ITGA11 (ENSMPUG00000000221) #33	CORO2B (ENSMPUG00000000220) #34	ENSMPUG00000000218 #35	ENSMPUG00000000216	SPESP1 (ENSMPUG00000000214) #36	NOX5 (ENSMPUG00000000210)
Felidae	ANCESTRAL SPECIES	1	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Panthera	ANCESTRAL SPECIES	3	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00860000136046	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00910000146962	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
lion	MODERN SPECIES	6	HACD3 (ENSPLOG00000009943) #8	INTS14 (ENSPLOG00000009755) #9	SLC24A1 (ENSPLOG00000009464) #10	DENND4A (ENSPLOG00000008717) #11	RAB11A (ENSPLOG00000008488) #12	MEGF11 (ENSPLOG00000008100) #13	DIS3L (ENSPLOG00000007929) #14	TIPIN (ENSPLOG00000007894) #15	MAP2K1 (ENSPLOG00000007836) #16	SNAPC5 (ENSPLOG00000007792) #17	RPL4 (ENSPLOG00000007707) #18	ZWILCH (ENSPLOG00000007600) #19	LCTL (ENSPLOG00000007528) #20	SMAD6 (ENSPLOG00000007495) #21	ENSPLOG00000007093	SMAD3 (ENSPLOG00000007068) #22	AAGAB (ENSPLOG00000007046) #23	IQCH (ENSPLOG00000006897) #24	C15orf61 (ENSPLOG00000006817) #25	MAP2K5 (ENSPLOG00000006228) #26	SKOR1 (ENSPLOG00000005020) #27	PIAS1 (ENSPLOG00000004975) #28	CALML4 (ENSPLOG00000004955) #30	CLN6 (ENSPLOG00000004871) #31	FEM1B (ENSPLOG00000004841) #32	ITGA11 (ENSPLOG00000004793) #33	CORO2B (ENSPLOG00000004744) #34	ENSPLOG00000004724 #35	SPESP1 (ENSPLOG00000004706) #36	NOX5 (ENSPLOG00000004683)	GLCE (ENSPLOG00000004669)
leopard	MODERN SPECIES	7	ENSPPRG00000001945	HACD3 (ENSPPRG00000003107) #8	INTS14 (ENSPPRG00000003935) #9	SLC24A1 (ENSPPRG00000006682) #10	DENND4A (ENSPPRG00000009637) #11	RAB11A (ENSPPRG00000010471) #12	MEGF11 (ENSPPRG00000014069) #13	DIS3L (ENSPPRG00000019912) #14	TIPIN (ENSPPRG00000022554) #15	MAP2K1 (ENSPPRG00000022608) #16	SNAPC5 (ENSPPRG00000000465) #17	ENSPPRG00000000610 #18	ZWILCH (ENSPPRG00000001390) #19	LCTL (ENSPPRG00000002315) #20	SMAD6 (ENSPPRG00000002502) #21	SMAD3 (ENSPPRG00000003306) #22	AAGAB (ENSPPRG00000003564) #23	IQCH (ENSPPRG00000005647) #24	C15orf61 (ENSPPRG00000005929) #25	ENSPPRG00000005987	MAP2K5 (ENSPPRG00000006923) #26	SKOR1 (ENSPPRG00000007828) #27	PIAS1 (ENSPPRG00000008695) #28	CALML4 (ENSPPRG00000009014) #30	CLN6 (ENSPPRG00000011593) #31	FEM1B (ENSPPRG00000011995) #32	ITGA11 (ENSPPRG00000014106) #33	CORO2B (ENSPPRG00000015002) #34	ENSPPRG00000015452 #35	NOX5 (ENSPPRG00000020694)	GLCE (ENSPPRG00000021675)
Tiger	MODERN SPECIES	204	DPP8 (ENSPTIG00000008731) #7	ENSPTIG00000012013	HACD3 (ENSPTIG00000012698) #8	INTS14 (ENSPTIG00000014987) #9	SLC24A1 (ENSPTIG00000017335) #10	DENND4A (ENSPTIG00000018874) #11	RAB11A (ENSPTIG00000021637) #12	MEGF11 (ENSPTIG00000001273) #13	DIS3L (ENSPTIG00000009042) #14	ENSPTIG00000009826	MAP2K1 (ENSPTIG00000010070) #16	SNAPC5 (ENSPTIG00000010493) #17	ENSPTIG00000010784 #18	ZWILCH (ENSPTIG00000011456) #19	LCTL (ENSPTIG00000012036) #20	SMAD3 (ENSPTIG00000012606) #22	AAGAB (ENSPTIG00000013747) #23	IQCH (ENSPTIG00000014096) #24	ENSPTIG00000015816	MAP2K5 (ENSPTIG00000016073) #26	ENSPTIG00000017654	PIAS1 (ENSPTIG00000017759) #28	CALML4 (ENSPTIG00000018784) #30	CLN6 (ENSPTIG00000019082) #31	FEM1B (ENSPTIG00000019928) #32	ITGA11 (ENSPTIG00000020061) #33	CORO2B (ENSPTIG00000001549) #34	ENSPTIG00000006135 #35	NOX5 (ENSPTIG00000006417)	GLCE (ENSPTIG00000008506)	PAQR5 (ENSPTIG00000008616)
Cat	MODERN SPECIES	237	DPP8 (ENSFCAG00000025415) #7	HACD3 (ENSFCAG00000008691) #8	INTS14 (ENSFCAG00000008692) #9	SLC24A1 (ENSFCAG00000008693) #10	DENND4A (ENSFCAG00000008694) #11	RAB11A (ENSFCAG00000030174) #12	MEGF11 (ENSFCAG00000003091) #13	DIS3L (ENSFCAG00000029869) #14	TIPIN (ENSFCAG00000035191) #15	MAP2K1 (ENSFCAG00000028389) #16	SNAPC5 (ENSFCAG00000012291) #17	RPL4 (ENSFCAG00000012293) #18	ZWILCH (ENSFCAG00000012294) #19	LCTL (ENSFCAG00000012298) #20	SMAD6 (ENSFCAG00000012300) #21	SMAD3 (ENSFCAG00000027081) #22	AAGAB (ENSFCAG00000004418) #23	IQCH (ENSFCAG00000004419) #24	CB3H15orf61 (ENSFCAG00000040546) #25	MAP2K5 (ENSFCAG00000004420) #26	SKOR1 (ENSFCAG00000043709) #27	PIAS1 (ENSFCAG00000018490) #28	CALML4 (ENSFCAG00000006497) #30	CLN6 (ENSFCAG00000025647) #31	ENSFCAG00000049632	FEM1B (ENSFCAG00000045964) #32	ITGA11 (ENSFCAG00000006499) #33	CORO2B (ENSFCAG00000006500) #34	ENSFCAG00000034954 #35	SPESP1 (ENSFCAG00000048668) #36	NOX5 (ENSFCAG00000001372)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Suina	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Pig	MODERN SPECIES		HACD3 (ENSSSCG00000004935) #8	INTS14 (ENSSSCG00000004936) #9	SLC24A1 (ENSSSCG00000004937) #10	DENND4A (ENSSSCG00000004938) #11	RAB11A (ENSSSCG00000032312) #12	MEGF11 (ENSSSCG00000004939) #13	DIS3L (ENSSSCG00000004941) #14	TIPIN (ENSSSCG00000004942) #15	MAP2K1 (ENSSSCG00000004943) #16	SNAPC5 (ENSSSCG00000038941) #17	RPL4 (ENSSSCG00000004945) #18	ZWILCH (ENSSSCG00000004946) #19	ENSSSCG00000051767	LCTL (ENSSSCG00000004947) #20	SMAD6 (ENSSSCG00000004948) #21	SMAD3 (ENSSSCG00000004952) #22	AAGAB (ENSSSCG00000004951) #23	ENSSSCG00000057448 #24	ENSSSCG00000034963 #24	C15orf61 (ENSSSCG00000004954) #25	MAP2K5 (ENSSSCG00000004955) #26	SKOR1 (ENSSSCG00000004956) #27	PIAS1 (ENSSSCG00000004958) #28	CALML4 (ENSSSCG00000026517) #30	CLN6 (ENSSSCG00000004957) #31	FEM1B (ENSSSCG00000022419) #32	ITGA11 (ENSSSCG00000004961) #33	CORO2B (ENSSSCG00000004962) #34	ENSSSCG00000004963 #35	SPESP1 (ENSSSCG00000032244) #36	NOX5 (ENSSSCG00000004966)
Chacoan peccary	MODERN SPECIES	786	DPP8 (ENSCWAG00000018161) #7	HACD3 (ENSCWAG00000017975) #8	INTS14 (ENSCWAG00000017595) #9	SLC24A1 (ENSCWAG00000017106) #10	DENND4A (ENSCWAG00000016363) #11	RAB11A (ENSCWAG00000016259) #12	MEGF11 (ENSCWAG00000015726) #13	DIS3L (ENSCWAG00000015597) #14	TIPIN (ENSCWAG00000015560) #15	MAP2K1 (ENSCWAG00000015519) #16	SNAPC5 (ENSCWAG00000015485) #17	RPL4 (ENSCWAG00000015376) #18	ZWILCH (ENSCWAG00000015266) #19	LCTL (ENSCWAG00000015109) #20	SMAD6 (ENSCWAG00000015079) #21	SMAD3 (ENSCWAG00000015026) #22	AAGAB (ENSCWAG00000014993) #23	IQCH (ENSCWAG00000014432) #24	C15orf61 (ENSCWAG00000014382) #25	MAP2K5 (ENSCWAG00000013886) #26	SKOR1 (ENSCWAG00000013676) #27	PIAS1 (ENSCWAG00000013465) #28	CALML4 (ENSCWAG00000013422) #30	CLN6 (ENSCWAG00000013181) #31	FEM1B (ENSCWAG00000013140) #32	ITGA11 (ENSCWAG00000013057) #33	CORO2B (ENSCWAG00000012937) #34	ENSCWAG00000012876 #35	SPESP1 (ENSCWAG00000012853) #36	GLCE (ENSCWAG00000012796)	PAQR5 (ENSCWAG00000012711)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Camelidae	ANCESTRAL SPECIES	83	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31
Arabian camel	MODERN SPECIES	32	HACD3 (ENSCDRG00005001929) #8	INTS14 (ENSCDRG00005001994) #9	SLC24A1 (ENSCDRG00005002129) #10	DENND4A (ENSCDRG00005002286) #11	RAB11A (ENSCDRG00005002443) #12	MEGF11 (ENSCDRG00005002479) #13	DIS3L (ENSCDRG00005002526) #14	TIPIN (ENSCDRG00005002562) #15	MAP2K1 (ENSCDRG00005002580) #16	SNAPC5 (ENSCDRG00005002604) #17	ENSCDRG00005002627 #18	ZWILCH (ENSCDRG00005002673) #19	LCTL (ENSCDRG00005002712) #20	ENSCDRG00005002745	ENSCDRG00005002755 #21	SMAD3 (ENSCDRG00005002780) #22	AAGAB (ENSCDRG00005002843) #23	IQCH (ENSCDRG00005002929) #24	C15orf61 (ENSCDRG00005003109) #25	MAP2K5 (ENSCDRG00005003152) #26	PIAS1 (ENSCDRG00005003494) #28	ENSCDRG00005003580	CALML4 (ENSCDRG00005003629) #30	CLN6 (ENSCDRG00005003662) #31	ENSCDRG00005003720	ENSCDRG00005003749	RAB8B (ENSCDRG00005003808)	APH1B (ENSCDRG00005003835)	CA12 (ENSCDRG00005003913)	ENSCDRG00005004006	ENSCDRG00005006370
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Pecora	ANCESTRAL SPECIES	6	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Yarkand deer	MODERN SPECIES	3	SLC24A1 (ENSCHYG00000008613) #10	DENND4A (ENSCHYG00000008838) #11	ENSCHYG00000009117	ENSCHYG00000009145 #12	MEGF11 (ENSCHYG00000009296) #13	DIS3L (ENSCHYG00000010099) #14	TIPIN (ENSCHYG00000010297) #15	MAP2K1 (ENSCHYG00000010364) #16	ENSCHYG00000010432	SNAPC5 (ENSCHYG00000010450) #17	ENSCHYG00000010506 #18	ZWILCH (ENSCHYG00000010774) #19	LCTL (ENSCHYG00000011283) #20	ENSCHYG00000011323	SMAD6 (ENSCHYG00000011380) #21	SMAD3 (ENSCHYG00000011473) #22	AAGAB (ENSCHYG00000011610) #23	IQCH (ENSCHYG00000011825) #24	C15orf61 (ENSCHYG00000012160) #25	MAP2K5 (ENSCHYG00000012261) #26	SKOR1 (ENSCHYG00000013681) #27	PIAS1 (ENSCHYG00000013992) #28	CALML4 (ENSCHYG00000014198) #30	CLN6 (ENSCHYG00000014290) #31	FEM1B (ENSCHYG00000014524) #32	ITGA11 (ENSCHYG00000014651) #33	CORO2B (ENSCHYG00000016934) #34	ENSCHYG00000017234 #35	SPESP1 (ENSCHYG00000017531) #36	NOX5 (ENSCHYG00000017570)	ENSCHYG00000017784
Percora_a	ANCESTRAL SPECIES	8	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Bovidae	ANCESTRAL SPECIES	7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Bovinae	ANCESTRAL SPECIES	33	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.ib #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Bos	ANCESTRAL SPECIES	31	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.ib #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.e.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Bos_a	ANCESTRAL SPECIES	40							ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.e.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00960000188521	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591
Wild yak	MODERN SPECIES	552								DIS3L (ENSBMUG00000005883) #14	TIPIN (ENSBMUG00000005904) #15	MAP2K1 (ENSBMUG00000005924) #16	SNAPC5 (ENSBMUG00000005936) #17	ENSBMUG00000005950 #18	ZWILCH (ENSBMUG00000006013) #19	LCTL (ENSBMUG00000006040) #20	ENSBMUG00000006090 #21	SMAD3 (ENSBMUG00000006115) #22	AAGAB (ENSBMUG00000006202) #23	IQCH (ENSBMUG00000006265) #24	ENSBMUG00000006346	MAP2K5 (ENSBMUG00000006406) #26	SKOR1 (ENSBMUG00000006456) #27	PIAS1 (ENSBMUG00000006486) #28	CALML4 (ENSBMUG00000006499) #30	CLN6 (ENSBMUG00000006571) #31	FEM1B (ENSBMUG00000006589) #32	ITGA11 (ENSBMUG00000006621) #33	CORO2B (ENSBMUG00000006646) #34	ENSBMUG00000006692 #35
Domestic yak	MODERN SPECIES	2	HACD3 (ENSBGRG00000025307) #8	INTS14 (ENSBGRG00000025180) #9	SLC24A1 (ENSBGRG00000025095) #10	ENSBGRG00000025078	DENND4A (ENSBGRG00000024953) #11	ENSBGRG00000024884 #12	MEGF11 (ENSBGRG00000024819) #13	DIS3L (ENSBGRG00000024760) #14	TIPIN (ENSBGRG00000024730) #15	MAP2K1 (ENSBGRG00000024678) #16	SNAPC5 (ENSBGRG00000024649) #17	ENSBGRG00000024489 #18	ZWILCH (ENSBGRG00000024356) #19	LCTL (ENSBGRG00000024229) #20	SMAD6 (ENSBGRG00000024050) #21	SMAD3 (ENSBGRG00000023965) #22	AAGAB (ENSBGRG00000023783) #23	IQCH (ENSBGRG00000023490) #24	ENSBGRG00000023451 #25	ENSBGRG00000023428	MAP2K5 (ENSBGRG00000023013) #26	SKOR1 (ENSBGRG00000022855) #27	PIAS1 (ENSBGRG00000022493) #28	CALML4 (ENSBGRG00000022400) #30	CLN6 (ENSBGRG00000022143) #31	FEM1B (ENSBGRG00000022079) #32	ITGA11 (ENSBGRG00000021881) #33	CORO2B (ENSBGRG00000021747) #34	ENSBGRG00000021463 #35	ENSBGRG00000021382 #36	NOX5 (ENSBGRG00000021070)
Bos_b	ANCESTRAL SPECIES	28	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914.ib #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.e.a #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Cow	MODERN SPECIES	1	HACD3 (ENSBTAG00000015155) #8	INTS14 (ENSBTAG00000015158) #9	SLC24A1 (ENSBTAG00000025826) #10	DENND4A (ENSBTAG00000017095) #11	RAB11A (ENSBTAG00000018959) #12	MEGF11 (ENSBTAG00000034140) #13	DIS3L (ENSBTAG00000000371) #14	TIPIN (ENSBTAG00000000372) #15	MAP2K1 (ENSBTAG00000033983) #16	SNAPC5 (ENSBTAG00000005210) #17	RPL4 (ENSBTAG00000005211) #18	ZWILCH (ENSBTAG00000005213) #19	LCTL (ENSBTAG00000005214) #20	ENSBTAG00000050356	SMAD6 (ENSBTAG00000000625) #21	SMAD3 (ENSBTAG00000012599) #22	AAGAB (ENSBTAG00000040368) #23	IQCH (ENSBTAG00000013638) #24	C10H15orf61 (ENSBTAG00000045628) #25	MAP2K5 (ENSBTAG00000000218) #26	PIAS1 (ENSBTAG00000005564) #28	CALML4 (ENSBTAG00000025822) #30	CLN6 (ENSBTAG00000005565) #31	FEM1B (ENSBTAG00000008378) #32	ITGA11 (ENSBTAG00000008380) #33	CORO2B (ENSBTAG00000012681) #34	ANP32A (ENSBTAG00000012365) #35	SPESP1 (ENSBTAG00000005994) #36	NOX5 (ENSBTAG00000009030)	GLCE (ENSBTAG00000001405)	PAQR5 (ENSBTAG00000020352)
Hybrid Bos Indicus	MODERN SPECIES	1	DENND4A (ENSBIXG00005007862) #11	HACD3 (ENSBIXG00005029324) #8	INTS14 (ENSBIXG00005029402) #9	SLC24A1 (ENSBIXG00005029443) #10	ENSBIXG00005029457	RAB11A (ENSBIXG00005029469) #12	MEGF11 (ENSBIXG00005029582) #13	DIS3L (ENSBIXG00005029839) #14	TIPIN (ENSBIXG00005029852) #15	ENSBIXG00005029869 #16	SNAPC5 (ENSBIXG00005029881) #17	ENSBIXG00005029889 #18	ZWILCH (ENSBIXG00005029921) #19	LCTL (ENSBIXG00005029961) #20	SMAD6 (ENSBIXG00005030012) #21	SMAD3 (ENSBIXG00005030065) #22	AAGAB (ENSBIXG00005030085) #23	IQCH (ENSBIXG00005030120) #24	C15orf61 (ENSBIXG00005030179) #25	MAP2K5 (ENSBIXG00005030309) #26	SKOR1 (ENSBIXG00005030471) #27	PIAS1 (ENSBIXG00005030503) #28	CALML4 (ENSBIXG00005030510) #30	ENSBIXG00005030548 #31	FEM1B (ENSBIXG00005030567) #32	ITGA11 (ENSBIXG00005030585) #33	CORO2B (ENSBIXG00005030625) #34	ENSBIXG00005030667 #35	SPESP1 (ENSBIXG00005030688) #36	NOX5 (ENSBIXG00005030704)	GLCE (ENSBIXG00005030727)
American bison	MODERN SPECIES	2972	DPP8 (ENSBBBG00000001480) #7	HACD3 (ENSBBBG00000009384) #8	INTS14 (ENSBBBG00000001482) #9	SLC24A1 (ENSBBBG00000009385) #10	DENND4A (ENSBBBG00000009388) #11	ENSBBBG00000001484 #12	MEGF11 (ENSBBBG00000009393) #13	DIS3L (ENSBBBG00000001485) #14	ENSBBBG00000009401	MAP2K1 (ENSBBBG00000009402) #16	SNAPC5 (ENSBBBG00000009405) #17	RPL4 (ENSBBBG00000009410) #18	ZWILCH (ENSBBBG00000007486) #19	LCTL (ENSBBBG00000009415) #20	SMAD6 (ENSBBBG00000001493) #21	SMAD3 (ENSBBBG00000009419) #22	AAGAB (ENSBBBG00000009422) #23	IQCH (ENSBBBG00000009426) #24	C15orf61 (ENSBBBG00000009428) #25	MAP2K5 (ENSBBBG00000009430) #26	PIAS1 (ENSBBBG00000009435) #28	CALML4 (ENSBBBG00000009437) #30	CLN6 (ENSBBBG00000001505) #31	FEM1B (ENSBBBG00000009440) #32	ITGA11 (ENSBBBG00000009443) #33	CORO2B (ENSBBBG00000009445) #34	ENSBBBG00000009447 #35	SPESP1 (ENSBBBG00000001512) #36	NOX5 (ENSBBBG00000009452)	GLCE (ENSBBBG00000009453)	PAQR5 (ENSBBBG00000009457)
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.o #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Rambouillet Sheep	MODERN SPECIES	23	DPP8 (ENSOARG00020005690) #7	HACD3 (ENSOARG00020005830) #8	INTS14 (ENSOARG00020006021) #9	SLC24A1 (ENSOARG00020006188) #10	DENND4A (ENSOARG00020006221) #11	ENSOARG00020006812 #12	MEGF11 (ENSOARG00020006928) #13	DIS3L (ENSOARG00020007756) #14	TIPIN (ENSOARG00020007825) #15	MAP2K1 (ENSOARG00020007890) #16	SNAPC5 (ENSOARG00020007973) #17	RPL4 (ENSOARG00020008040) #18	ZWILCH (ENSOARG00020008203) #19	LCTL (ENSOARG00020008384) #20	SMAD6 (ENSOARG00020008552) #21	SMAD3 (ENSOARG00020008589) #22	ENSOARG00020008703 #23	IQCH (ENSOARG00020008820) #24	C15orf61 (ENSOARG00020009584) #25	MAP2K5 (ENSOARG00020009665) #26	SKOR1 (ENSOARG00020010969) #27	PIAS1 (ENSOARG00020011172) #28	CALML4 (ENSOARG00020011634) #30	CLN6 (ENSOARG00020011715) #31	FEM1B (ENSOARG00020011984) #32	ITGA11 (ENSOARG00020012015) #33	CORO2B (ENSOARG00020012576) #34	ENSOARG00020012822 #35	SPESP1 (ENSOARG00020012911) #36	NOX5 (ENSOARG00020012967)	GLCE (ENSOARG00020013246)
Goat	MODERN SPECIES	1	INTS14 (ENSCHIG00000012971) #9	SLC24A1 (ENSCHIG00000023644) #10	ENSCHIG00000015128	DENND4A (ENSCHIG00000024015) #11	ENSCHIG00000012183 #12	ENSCHIG00000006809	MEGF11 (ENSCHIG00000023140) #13	DIS3L (ENSCHIG00000009744) #14	ENSCHIG00000000481 #15	MAP2K1 (ENSCHIG00000021340) #16	SNAPC5 (ENSCHIG00000011315) #17	RPL4 (ENSCHIG00000012421) #18	ZWILCH (ENSCHIG00000015830) #19	LCTL (ENSCHIG00000017181) #20	SMAD6 (ENSCHIG00000012651) #21	SMAD3 (ENSCHIG00000013774) #22	ENSCHIG00000015028 #23	IQCH (ENSCHIG00000009034) #24	C15orf61 (ENSCHIG00000026630) #25	MAP2K5 (ENSCHIG00000022039) #26	SKOR1 (ENSCHIG00000017580) #27	ENSCHIG00000010951	ENSCHIG00000003884	PIAS1 (ENSCHIG00000014001) #28	CALML4 (ENSCHIG00000005207) #30	CLN6 (ENSCHIG00000024128) #31	FEM1B (ENSCHIG00000023393) #32	ITGA11 (ENSCHIG00000025296) #33	CORO2B (ENSCHIG00000023253) #34	ENSCHIG00000011806 #35	SPESP1 (ENSCHIG00000013213) #36
Siberian musk deer	MODERN SPECIES	70	HACD3 (ENSMMSG00000000485) #8	INTS14 (ENSMMSG00000000581) #9	SLC24A1 (ENSMMSG00000000735) #10	ENSMMSG00000000783	DENND4A (ENSMMSG00000000845) #11	ENSMMSG00000000971 #12	MEGF11 (ENSMMSG00000001023) #13	DIS3L (ENSMMSG00000001148) #14	TIPIN (ENSMMSG00000001178) #15	MAP2K1 (ENSMMSG00000001210) #16	SNAPC5 (ENSMMSG00000001249) #17	ENSMMSG00000001277 #18	ZWILCH (ENSMMSG00000001358) #19	LCTL (ENSMMSG00000001442) #20	SMAD6 (ENSMMSG00000001473) #21	SMAD3 (ENSMMSG00000001493) #22	AAGAB (ENSMMSG00000001517) #23	IQCH (ENSMMSG00000001575) #24	C15orf61 (ENSMMSG00000001796) #25	MAP2K5 (ENSMMSG00000001850) #26	SKOR1 (ENSMMSG00000002112) #27	PIAS1 (ENSMMSG00000002174) #28	CALML4 (ENSMMSG00000002206) #30	CLN6 (ENSMMSG00000002230) #31	FEM1B (ENSMMSG00000002327) #32	ITGA11 (ENSMMSG00000002350) #33	CORO2B (ENSMMSG00000002385) #34	ENSMMSG00000002437	ENSMMSG00000002461 #35	ENSMMSG00000002508	NOX5 (ENSMMSG00000002533)
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Odontoceti	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT01010000222830.d.a	ENSGT00390000006043
Monodontidae	ANCESTRAL SPECIES	27	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145.xc.b #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00910000147890	ENSGT00940000158146 #21	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT00940000158086	ENSGT00940000157725	ENSGT00860000136093.c	ENSGT00390000008748.b	ENSGT00940000164579.e.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a
Beluga whale	MODERN SPECIES	20	DENND4A (ENSDLEG00000009569) #11	RAB11A (ENSDLEG00000009643) #12	MEGF11 (ENSDLEG00000009720) #13	DIS3L (ENSDLEG00000009982) #14	TIPIN (ENSDLEG00000010313) #15	ENSDLEG00000010343	MAP2K1 (ENSDLEG00000010364) #16	SNAPC5 (ENSDLEG00000010421) #17	RPL4 (ENSDLEG00000010430) #18	ZWILCH (ENSDLEG00000010482) #19	LCTL (ENSDLEG00000010607) #20	ENSDLEG00000010647	ENSDLEG00000010657	SMAD6 (ENSDLEG00000010676) #21	ENSDLEG00000010689	SMAD3 (ENSDLEG00000010707) #22	AAGAB (ENSDLEG00000010803) #23	IQCH (ENSDLEG00000010864) #24	CUNH15orf61 (ENSDLEG00000010984) #25	MAP2K5 (ENSDLEG00000011046) #26	SKOR1 (ENSDLEG00000011320) #27	ENSDLEG00000011378	ENSDLEG00000011393	PIAS1 (ENSDLEG00000011410) #28	CALML4 (ENSDLEG00000011480) #30	CLN6 (ENSDLEG00000011495) #31	FEM1B (ENSDLEG00000011544) #32	ITGA11 (ENSDLEG00000000304) #33	CORO2B (ENSDLEG00000000393) #34	ANP32A (ENSDLEG00000000431) #35	SPESP1 (ENSDLEG00000000475) #36
Narwhal	MODERN SPECIES	308	SLC24A1 (ENSMMNG00015007028) #10	DENND4A (ENSMMNG00015007114) #11	RAB11A (ENSMMNG00015007170) #12	MEGF11 (ENSMMNG00015007280) #13	DIS3L (ENSMMNG00015007393) #14	TIPIN (ENSMMNG00015007474) #15	ENSMMNG00015007536	MAP2K1 (ENSMMNG00015007579) #16	SNAPC5 (ENSMMNG00015007601) #17	ENSMMNG00015007652 #18	ZWILCH (ENSMMNG00015007746) #19	LCTL (ENSMMNG00015007784) #20	ENSMMNG00015007816	SMAD6 (ENSMMNG00015007869) #21	ENSMMNG00015007889	SMAD3 (ENSMMNG00015007909) #22	AAGAB (ENSMMNG00015007942) #23	IQCH (ENSMMNG00015008052) #24	C15orf61 (ENSMMNG00015008139) #25	MAP2K5 (ENSMMNG00015008216) #26	SKOR1 (ENSMMNG00015008331) #27	ENSMMNG00015008358	PIAS1 (ENSMMNG00015008373) #28	CALML4 (ENSMMNG00015008408) #30	CLN6 (ENSMMNG00015008469) #31	FEM1B (ENSMMNG00015008513) #32	ITGA11 (ENSMMNG00015008533) #33	CORO2B (ENSMMNG00015008567) #34	ENSMMNG00015008598 #35	SPESP1 (ENSMMNG00015008626) #36	ENSMMNG00015008639
Vaquita	MODERN SPECIES	11	SLC24A1 (ENSPSNG00000002890) #10	DENND4A (ENSPSNG00000002770) #11	ENSPSNG00000002715	RAB11A (ENSPSNG00000002694) #12	MEGF11 (ENSPSNG00000002539) #13	ENSPSNG00000002464 #14	TIPIN (ENSPSNG00000002436) #15	MAP2K1 (ENSPSNG00000002407) #16	SNAPC5 (ENSPSNG00000002388) #17	ENSPSNG00000002352 #18	ZWILCH (ENSPSNG00000002336) #19	LCTL (ENSPSNG00000002318) #20	ENSPSNG00000002306	SMAD6 (ENSPSNG00000002293) #21	ENSPSNG00000002286	SMAD3 (ENSPSNG00000002263) #22	AAGAB (ENSPSNG00000002239) #23	IQCH (ENSPSNG00000002126) #24	C15orf61 (ENSPSNG00000002043) #25	MAP2K5 (ENSPSNG00000001943) #26	SKOR1 (ENSPSNG00000001839) #27	ENSPSNG00000001804	PIAS1 (ENSPSNG00000001758) #28	CALML4 (ENSPSNG00000001723) #30	CLN6 (ENSPSNG00000001671) #31	FEM1B (ENSPSNG00000001608) #32	ITGA11 (ENSPSNG00000001465) #33	CORO2B (ENSPSNG00000001338) #34	ENSPSNG00000001312 #35	SPESP1 (ENSPSNG00000001290) #36	ENSPSNG00000001278
Dolphin	MODERN SPECIES	1671																SMAD3 (ENSTTRG00000003030) #22	AAGAB (ENSTTRG00000003032) #23	IQCH (ENSTTRG00000003033) #24	C15orf61 (ENSTTRG00000003034) #25	MAP2K5 (ENSTTRG00000003035) #26	SKOR1 (ENSTTRG00000003036) #27
Sperm whale	MODERN SPECIES	2	INTS14 (ENSPCTG00005015317) #9	SLC24A1 (ENSPCTG00005015689) #10	DENND4A (ENSPCTG00005016168) #11	RAB11A (ENSPCTG00005016434) #12	MEGF11 (ENSPCTG00005016590) #13	DIS3L (ENSPCTG00005017408) #14	TIPIN (ENSPCTG00005017493) #15	MAP2K1 (ENSPCTG00005017538) #16	SNAPC5 (ENSPCTG00005017569) #17	ENSPCTG00005017611 #18	ZWILCH (ENSPCTG00005017727) #19	LCTL (ENSPCTG00005017782) #20	ENSPCTG00005018004	SMAD6 (ENSPCTG00005018032) #21	ENSPCTG00005018068	SMAD3 (ENSPCTG00005018084) #22	AAGAB (ENSPCTG00005018169) #23	IQCH (ENSPCTG00005018285) #24	C11H15orf61 (ENSPCTG00005018901) #25	MAP2K5 (ENSPCTG00005018992) #26	SKOR1 (ENSPCTG00005019628) #27	ENSPCTG00005019847	ENSPCTG00005019890	PIAS1 (ENSPCTG00005019931) #28	CALML4 (ENSPCTG00005019999) #30	CLN6 (ENSPCTG00005020048) #31	FEM1B (ENSPCTG00005020203) #32	ITGA11 (ENSPCTG00005020249) #33	SPESP1 (ENSPCTG00005020391) #36	GLCE (ENSPCTG00005020426)	PAQR5 (ENSPCTG00005020467)
Blue whale	MODERN SPECIES	11	HACD3 (ENSBMSG00010004707) #8	INTS14 (ENSBMSG00010004651) #9	SLC24A1 (ENSBMSG00010004497) #10	DENND4A (ENSBMSG00010004402) #11	RAB11A (ENSBMSG00010004363) #12	MEGF11 (ENSBMSG00010004218) #13	DIS3L (ENSBMSG00010004171) #14	ENSBMSG00010004151 #15	ENSBMSG00010004137	MAP2K1 (ENSBMSG00010004109) #16	ENSBMSG00010004081 #17	ENSBMSG00010004041 #18	ZWILCH (ENSBMSG00010004025) #19	LCTL (ENSBMSG00010003979) #20	SMAD6 (ENSBMSG00010003960) #21	SMAD3 (ENSBMSG00010003929) #22	AAGAB (ENSBMSG00010003912) #23	IQCH (ENSBMSG00010003720) #24	C15orf61 (ENSBMSG00010003681) #25	MAP2K5 (ENSBMSG00010003598) #26	SKOR1 (ENSBMSG00010003555) #27	PIAS1 (ENSBMSG00010003520) #28	CALML4 (ENSBMSG00010003507) #30	CLN6 (ENSBMSG00010003453) #31	FEM1B (ENSBMSG00010003441) #32	ITGA11 (ENSBMSG00010003422) #33	ENSBMSG00010003412	CORO2B (ENSBMSG00010003388) #34	ENSBMSG00010003371 #35	SPESP1 (ENSBMSG00010003359) #36	ENSBMSG00010003347
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00390000005362 #36	ENSGT00940000162591	ENSGT00390000006043
Xenarthra	ANCESTRAL SPECIES	973																ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908.i #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26
Armadillo	MODERN SPECIES	4622																SMAD3 (ENSDNOG00000044090) #22	AAGAB (ENSDNOG00000025858) #23	ENSDNOG00000031612 #24
Sloth	MODERN SPECIES	5512																SMAD3 (ENSCHOG00000001562) #22
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33
Elephant	MODERN SPECIES	466	IGDCC3 (ENSLAFG00000000244)	IGDCC4 (ENSLAFG00000022955)	DPP8 (ENSLAFG00000013000) #7	HACD3 (ENSLAFG00000010226) #8	INTS14 (ENSLAFG00000010235) #9	DENND4A (ENSLAFG00000010247) #11	RAB11A (ENSLAFG00000011418) #12	MEGF11 (ENSLAFG00000011424) #13	DIS3L (ENSLAFG00000006866) #14	TIPIN (ENSLAFG00000026016) #15	MAP2K1 (ENSLAFG00000006487) #16	SNAPC5 (ENSLAFG00000006491) #17	RPL4 (ENSLAFG00000006494) #18	LCTL (ENSLAFG00000012306) #20	SMAD6 (ENSLAFG00000013285) #21	SMAD3 (ENSLAFG00000021903) #22	AAGAB (ENSLAFG00000022590) #23	IQCH (ENSLAFG00000011381) #24	C15orf61 (ENSLAFG00000000737) #25	MAP2K5 (ENSLAFG00000001427) #26	SKOR1 (ENSLAFG00000018189) #27	ENSLAFG00000029244	PIAS1 (ENSLAFG00000018150) #28	CALML4 (ENSLAFG00000021943) #30	CLN6 (ENSLAFG00000029055) #31	FEM1B (ENSLAFG00000013998) #32	ITGA11 (ENSLAFG00000018505) #33
Hyrax	MODERN SPECIES	5063																SMAD3 (ENSPCAG00000008103) #22	AAGAB (ENSPCAG00000008177) #23	IQCH (ENSPCAG00000008236) #24
Tenrec	MODERN SPECIES	5988																SMAD3 (ENSETEG00000003356) #22	ENSETEG00000003361 #23
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
koala	MODERN SPECIES		DPP8 (ENSPCIG00000024105) #7	HACD3 (ENSPCIG00000008851) #8	INTS14 (ENSPCIG00000008852) #9	ENSPCIG00000008854 #10	DENND4A (ENSPCIG00000006919) #11	RAB11A (ENSPCIG00000006878) #12	MEGF11 (ENSPCIG00000006843) #13	DIS3L (ENSPCIG00000006827) #14	TIPIN (ENSPCIG00000006818) #15	MAP2K1 (ENSPCIG00000006816) #16	ENSPCIG00000006812 #17	RPL4 (ENSPCIG00000006799) #18	ZWILCH (ENSPCIG00000006798) #19	LCTL (ENSPCIG00000006796) #20	SMAD6 (ENSPCIG00000006792) #21	SMAD3 (ENSPCIG00000014066) #22	AAGAB (ENSPCIG00000014065) #23	IQCH (ENSPCIG00000023221) #24	C15orf61 (ENSPCIG00000023229) #25	MAP2K5 (ENSPCIG00000023233) #26	SKOR1 (ENSPCIG00000023240) #27	PIAS1 (ENSPCIG00000023245) #28	CALML4 (ENSPCIG00000023241) #30	CLN6 (ENSPCIG00000023237) #31	ENSPCIG00000023218	ITGA11 (ENSPCIG00000023209) #33	CORO2B (ENSPCIG00000023206) #34	ENSPCIG00000023204 #35	NOX5 (ENSPCIG00000013880)	GLCE (ENSPCIG00000013869)	PAQR5 (ENSPCIG00000013860)
Common wonbat	MODERN SPECIES	581	DPP8 (ENSVURG00010016847) #7	HACD3 (ENSVURG00010016877) #8	INTS14 (ENSVURG00010016912) #9	ENSVURG00010017031 #10	DENND4A (ENSVURG00010017069) #11	RAB11A (ENSVURG00010017156) #12	MEGF11 (ENSVURG00010017205) #13	DIS3L (ENSVURG00010017304) #14	TIPIN (ENSVURG00010017324) #15	MAP2K1 (ENSVURG00010017352) #16	SNAPC5 (ENSVURG00010017361) #17	RPL4 (ENSVURG00010017371) #18	ZWILCH (ENSVURG00010017403) #19	LCTL (ENSVURG00010017479) #20	SMAD6 (ENSVURG00010017499) #21	SMAD3 (ENSVURG00010017513) #22	AAGAB (ENSVURG00010017532) #23	IQCH (ENSVURG00010017554) #24	ENSVURG00010017577	C15orf61 (ENSVURG00010017585) #25	MAP2K5 (ENSVURG00010017619) #26	SKOR1 (ENSVURG00010017727) #27	PIAS1 (ENSVURG00010017756) #28	CALML4 (ENSVURG00010017772) #30	CLN6 (ENSVURG00010017776) #31	FEM1B (ENSVURG00010017788) #32	ITGA11 (ENSVURG00010017821) #33	CORO2B (ENSVURG00010018179) #34	ENSVURG00010018193 #35	NOX5 (ENSVURG00010018209)	GLCE (ENSVURG00010018222)
Wallaby	MODERN SPECIES	7451																SMAD3 (ENSMEUG00000016668) #22	ENSMEUG00000016678 #23	ENSMEUG00000016685 #24
Tasmanian devil	MODERN SPECIES	1	DPP8 (ENSSHAG00000012989) #7	HACD3 (ENSSHAG00000013349) #8	INTS14 (ENSSHAG00000013462) #9	SLC24A1 (ENSSHAG00000013623) #10	DENND4A (ENSSHAG00000002367) #11	RAB11A (ENSSHAG00000006622) #12	MEGF11 (ENSSHAG00000006869) #13	DIS3L (ENSSHAG00000010970) #14	TIPIN (ENSSHAG00000011237) #15	MAP2K1 (ENSSHAG00000029460) #16	SNAPC5 (ENSSHAG00000025154) #17	RPL4 (ENSSHAG00000002421) #18	ZWILCH (ENSSHAG00000002622) #19	LCTL (ENSSHAG00000003461) #20	SMAD6 (ENSSHAG00000007962) #21	SMAD3 (ENSSHAG00000023904) #22	AAGAB (ENSSHAG00000012729) #23	IQCH (ENSSHAG00000012985) #24	C15orf61 (ENSSHAG00000031222) #25	MAP2K5 (ENSSHAG00000014400) #26	SKOR1 (ENSSHAG00000027578) #27	PIAS1 (ENSSHAG00000022295) #28	CALML4 (ENSSHAG00000028912) #30	ENSSHAG00000003272 #31	FEM1B (ENSSHAG00000030104) #32	ITGA11 (ENSSHAG00000005006) #33	CORO2B (ENSSHAG00000009104) #34	ENSSHAG00000010906 #35	NOX5 (ENSSHAG00000012412)	GLCE (ENSSHAG00000023440)	ENSSHAG00000014510
Opossum	MODERN SPECIES		HACD3 (ENSMODG00000009893) #8	INTS14 (ENSMODG00000009876) #9	SLC24A1 (ENSMODG00000009861) #10	DENND4A (ENSMODG00000009838) #11	RAB11A (ENSMODG00000009810) #12	MEGF11 (ENSMODG00000009795) #13	DIS3L (ENSMODG00000009760) #14	TIPIN (ENSMODG00000009724) #15	ENSMODG00000039883	MAP2K1 (ENSMODG00000009715) #16	ENSMODG00000025470 #17	RPL4 (ENSMODG00000009657) #18	ZWILCH (ENSMODG00000009648) #19	LCTL (ENSMODG00000009632) #20	SMAD6 (ENSMODG00000009620) #21	SMAD3 (ENSMODG00000038564) #22	ENSMODG00000009585 #23	ENSMODG00000009566 #24	C15orf61 (ENSMODG00000036723) #25	MAP2K5 (ENSMODG00000009527) #26	SKOR1 (ENSMODG00000024583) #27	PIAS1 (ENSMODG00000009467) #28	CALML4 (ENSMODG00000009430) #30	CLN6 (ENSMODG00000009425) #31	FEM1B (ENSMODG00000051021) #32	ITGA11 (ENSMODG00000009413) #33	ENSMODG00000040904	CORO2B (ENSMODG00000009371) #34	ENSMODG00000009359 #35	NOX5 (ENSMODG00000009308)	GLCE (ENSMODG00000042930)
Platypus	MODERN SPECIES	16	DPP8 (ENSOANG00000008346) #7	ENSOANG00000046972 #8	INTS14 (ENSOANG00000001669) #9	ENSOANG00000043682 #10	DENND4A (ENSOANG00000044994) #11	RAB11A (ENSOANG00000038794) #12	MEGF11 (ENSOANG00000037204) #13	DIS3L (ENSOANG00000009753) #14	TIPIN (ENSOANG00000048848) #15	MAP2K1 (ENSOANG00000009750) #16	SNAPC5 (ENSOANG00000039654) #17	RPL4 (ENSOANG00000048650) #18	ZWILCH (ENSOANG00000004555) #19	LCTL (ENSOANG00000004554) #20	SMAD6 (ENSOANG00000042174) #21	SMAD3 (ENSOANG00000037003) #22	AAGAB (ENSOANG00000046695) #23	ENSOANG00000013556 #24	C15orf61 (ENSOANG00000042403) #25	MAP2K5 (ENSOANG00000013555) #26	SKOR1 (ENSOANG00000041839) #27	PIAS1 (ENSOANG00000013547) #28	CALML4 (ENSOANG00000036767) #30	CLN6 (ENSOANG00000044196) #31	ENSOANG00000013544	ITGA11 (ENSOANG00000013543) #33	CORO2B (ENSOANG00000013538) #34	ENSOANG00000048109 #35	ENSOANG00000013537 #36	NOX5 (ENSOANG00000012494)	GLCE (ENSOANG00000040386)
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
tuatara	DUPLICATION
tuatara	MODERN SPECIES	842		ENSSPUG00000013730 #11	ENSSPUG00000013724 #11	ENSSPUG00000013716 #11	ENSSPUG00000013706 #11	RAB11A (ENSSPUG00000013698) #12	MEGF11 (ENSSPUG00000013679) #13	DIS3L (ENSSPUG00000013652) #14	TIPIN (ENSSPUG00000013622) #15	MAP2K1 (ENSSPUG00000013607) #16	SNAPC5 (ENSSPUG00000013599) #17	RPL4 (ENSSPUG00000013570) #18	ENSSPUG00000013505 #19	LCTL (ENSSPUG00000013481) #20	SMAD6 (ENSSPUG00000013465) #21	SMAD3 (ENSSPUG00000013429) #22	AAGAB (ENSSPUG00000013388) #23	C15orf61 (ENSSPUG00000013351) #25	MAP2K5 (ENSSPUG00000013303) #26	PIAS1 (ENSSPUG00000013205) #28	CALML4 (ENSSPUG00000013190) #30	CLN6 (ENSSPUG00000013176) #31	ENSSPUG00000013166	ITGA11 (ENSSPUG00000013143) #33	CORO2B (ENSSPUG00000013122) #34	ENSSPUG00000013106 #35	NOX5 (ENSSPUG00000013079)	GLCE (ENSSPUG00000013062)	PAQR5 (ENSSPUG00000013045)	KIF23 (ENSSPUG00000012998)
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	662											SNRNP40 (ENSSPUG00000006897)	ZCCHC17 (ENSSPUG00000006912)	FABP3 (ENSSPUG00000006916)	ENSSPUG00000006942	SERINC2 (ENSSPUG00000006953)	ENSSPUG00000006973 #22
tuatara	MODERN SPECIES	1796	CTXND1 (ENSSPUG00000012478)	FAH (ENSSPUG00000012464)	ZFAND6 (ENSSPUG00000012449)	BCL2A1 (ENSSPUG00000012440)	MTHFS (ENSSPUG00000012416)	MINAR1 (ENSSPUG00000012401)	PEX11A (ENSSPUG00000012387)	ENSSPUG00000012381	ENSSPUG00000012366	ENSSPUG00000012309	ENSSPUG00000012264	RHCG (ENSSPUG00000012244)	POLG (ENSSPUG00000012224)	FANCI (ENSSPUG00000012182)	RLBP1 (ENSSPUG00000012149)	ENSSPUG00000012138 #22	ABHD2 (ENSSPUG00000012128)	MFGE8 (ENSSPUG00000012114)	HAPLN3 (ENSSPUG00000012102)	ACAN (ENSSPUG00000012070)	ISG20 (ENSSPUG00000012061)	ENSSPUG00000012053	ENSSPUG00000012045	ENSSPUG00000012030	MRPS11 (ENSSPUG00000012009)	ENSSPUG00000012000	ENSSPUG00000011993	NTRK3 (ENSSPUG00000011968)	AGBL1 (ENSSPUG00000011923)	KLHL25 (ENSSPUG00000011909)	ENSSPUG00000011799
tuatara	MODERN SPECIES	469															CREBBP (ENSSPUG00000016747)	ENSSPUG00000016737 #22	TRAP1 (ENSSPUG00000016721)	ENSSPUG00000016711	ENSSPUG00000016690
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Laterata	ANCESTRAL SPECIES	16	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000014144	HACD3 (ENSPMRG00000014152) #8	INTS14 (ENSPMRG00000014159) #9	DENND4A (ENSPMRG00000014169) #11	RAB11A (ENSPMRG00000014183) #12	MEGF11 (ENSPMRG00000014263) #13	ENSPMRG00000014534	ENSPMRG00000014537	DIS3L (ENSPMRG00000014540) #14	TIPIN (ENSPMRG00000014546) #15	MAP2K1 (ENSPMRG00000014555) #16	SNAPC5 (ENSPMRG00000014563) #17	RPL4 (ENSPMRG00000014570) #18	ZWILCH (ENSPMRG00000014603) #19	SMAD6 (ENSPMRG00000014612) #21	ENSPMRG00000014621 #22	AAGAB (ENSPMRG00000014629) #23	IQCH (ENSPMRG00000014635) #24	C15orf61 (ENSPMRG00000014653) #25	MAP2K5 (ENSPMRG00000014661) #26	SKOR1 (ENSPMRG00000014676) #27	PIAS1 (ENSPMRG00000014688) #28	CALML4 (ENSPMRG00000014698) #30	CLN6 (ENSPMRG00000014706) #31	ENSPMRG00000014712	ENSPMRG00000014717	ITGA11 (ENSPMRG00000014723) #33	CORO2B (ENSPMRG00000014736) #34	ENSPMRG00000014760 #35	NOX5 (ENSPMRG00000014775)	ALAD (ENSPMRG00000014792)
Common wall lizard	MODERN SPECIES	419	PCDH19 (ENSPMRG00000019237)	ENSPMRG00000019243	ENSPMRG00000019247	ENSPMRG00000019251	DIAPH2 (ENSPMRG00000019275)	ENSPMRG00000019335	ENSPMRG00000019341	ENSPMRG00000019352	ENSPMRG00000019359	KLHL4 (ENSPMRG00000019362)	STAG2 (ENSPMRG00000019375)	XIAP (ENSPMRG00000019403)	ENSPMRG00000019431	ENSPMRG00000019473	GRIA3 (ENSPMRG00000019489)	ENSPMRG00000019531 #22	ENSPMRG00000019537	ENSPMRG00000019540	ENSPMRG00000019543	ENSPMRG00000019550	CUL4B (ENSPMRG00000019560)	LAMP2 (ENSPMRG00000019585)	ENSPMRG00000019602	ATP1B4 (ENSPMRG00000019610)	ENSPMRG00000019622	ZBTB33 (ENSPMRG00000019633)	ENSPMRG00000019638	AKAP14 (ENSPMRG00000019648)	ENSPMRG00000019655	UPF3B (ENSPMRG00000019662)	ENSPMRG00000019674
Argentine black and white tegu	MODERN SPECIES	46	IGDCC3 (ENSSMRG00000021594)	IGDCC4 (ENSSMRG00000021593)	DPP8 (ENSSMRG00000021592) #7	HACD3 (ENSSMRG00000021591) #8	INTS14 (ENSSMRG00000021590) #9	DENND4A (ENSSMRG00000021589) #11	RAB11A (ENSSMRG00000021588) #12	MEGF11 (ENSSMRG00000021585) #13	DIS3L (ENSSMRG00000021584) #14	TIPIN (ENSSMRG00000021582) #15	MAP2K1 (ENSSMRG00000021581) #16	SNAPC5 (ENSSMRG00000021580) #17	RPL4 (ENSSMRG00000021574) #18	ZWILCH (ENSSMRG00000021573) #19	SMAD6 (ENSSMRG00000021572) #21	SMAD3 (ENSSMRG00000021571) #22	AAGAB (ENSSMRG00000021570) #23	IQCH (ENSSMRG00000021569) #24	C15orf61 (ENSSMRG00000021568) #25	MAP2K5 (ENSSMRG00000021567) #26	SKOR1 (ENSSMRG00000021566) #27	PIAS1 (ENSSMRG00000021565) #28	CALML4 (ENSSMRG00000021564) #30	CLN6 (ENSSMRG00000021563) #31	ENSSMRG00000021562	ITGA11 (ENSSMRG00000021561) #33	CORO2B (ENSSMRG00000021560) #34	ENSSMRG00000021559 #35	NOX5 (ENSSMRG00000021557)	GLCE (ENSSMRG00000021556)	PAQR5 (ENSSMRG00000021554)
Toxicofera	ANCESTRAL SPECIES	40	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Lizard	MODERN SPECIES	1079											ENSACAG00000005016	ENSACAG00000004994	RPL4 (ENSACAG00000009759) #18	ZWILCH (ENSACAG00000009844) #19	SMAD6 (ENSACAG00000009899) #21	SMAD3 (ENSACAG00000009914) #22	AAGAB (ENSACAG00000010006) #23	IQCH (ENSACAG00000010052) #24	C15orf61 (ENSACAG00000038258) #25	MAP2K5 (ENSACAG00000010072) #26	PIAS1 (ENSACAG00000010183) #28	CALML4 (ENSACAG00000010259) #30	CLN6 (ENSACAG00000010272) #31	FEM1B (ENSACAG00000001361) #32
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b.d #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Indian cobra	MODERN SPECIES	14	IGF1R (ENSNNAG00000004949)	SYNM (ENSNNAG00000007433)	DPP8 (ENSNNAG00000007591) #7	HACD3 (ENSNNAG00000009979) #8	INTS14 (ENSNNAG00000010021) #9	DENND4A (ENSNNAG00000010330) #11	RAB11A (ENSNNAG00000010435) #12	MEGF11 (ENSNNAG00000010468) #13	DIS3L (ENSNNAG00000010799) #14	TIPIN (ENSNNAG00000010924) #15	MAP2K1 (ENSNNAG00000010963) #16	SNAPC5 (ENSNNAG00000011012) #17	RPL4 (ENSNNAG00000011026) #18	ZWILCH (ENSNNAG00000011099) #19	SMAD6 (ENSNNAG00000011230) #21	SMAD3 (ENSNNAG00000011272) #22	AAGAB (ENSNNAG00000011287) #23	ENSNNAG00000011356	IQCH (ENSNNAG00000011412) #24	C15orf61 (ENSNNAG00000011603) #25	MAP2K5 (ENSNNAG00000011631) #26	SKOR1 (ENSNNAG00000011796) #27	PIAS1 (ENSNNAG00000012101) #28	CLN6 (ENSNNAG00000012206) #31	ENSNNAG00000012296	ITGA11 (ENSNNAG00000012334) #33	CORO2B (ENSNNAG00000012805) #34	ENSNNAG00000012830 #35	NOX5 (ENSNNAG00000012871)	GLCE (ENSNNAG00000012927)	ADAMTS7 (ENSNNAG00000012990)
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B.m #11	ENSGT00940000155836.B.n #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b.d #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000159819	ENSGT00390000017697.a
Blue-lipped sea krait	MODERN SPECIES	7285																SMAD3 (ENSLLTG00000004545) #22
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00940000160523	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT00940000155836.B.m #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b.d #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000164138	ENSGT00940000155465.c #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000159819	ENSGT00390000016791
Eastern brown snake	MODERN SPECIES	43	ARRDC4 (ENSPTXG00000015586)	IGF1R (ENSPTXG00000015585)	SYNM (ENSPTXG00000015583)	DPP8 (ENSPTXG00000015569) #7	HACD3 (ENSPTXG00000015568) #8	INTS14 (ENSPTXG00000015567) #9	DENND4A (ENSPTXG00000015565) #11	RAB11A (ENSPTXG00000015564) #12	MEGF11 (ENSPTXG00000015560) #13	DIS3L (ENSPTXG00000015557) #14	TIPIN (ENSPTXG00000015555) #15	MAP2K1 (ENSPTXG00000015554) #16	SNAPC5 (ENSPTXG00000015552) #17	RPL4 (ENSPTXG00000015545) #18	SMAD6 (ENSPTXG00000015543) #21	SMAD3 (ENSPTXG00000015540) #22	AAGAB (ENSPTXG00000015539) #23	IQCH (ENSPTXG00000015536) #24	C15orf61 (ENSPTXG00000015534) #25	MAP2K5 (ENSPTXG00000015531) #26	ENSPTXG00000015529	PIAS1 (ENSPTXG00000015528) #28	CALML4 (ENSPTXG00000015527) #30	CLN6 (ENSPTXG00000015526) #31	ENSPTXG00000015525	ITGA11 (ENSPTXG00000015524) #33	CORO2B (ENSPTXG00000015523) #34	ENSPTXG00000015522 #35	NOX5 (ENSPTXG00000015521)	GLCE (ENSPTXG00000015519)	ADAMTS7 (ENSPTXG00000015512)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	49	ARRDC4 (ENSNSUG00000002927)	IGF1R (ENSNSUG00000002935)	SYNM (ENSNSUG00000002939)	DPP8 (ENSNSUG00000002945) #7	HACD3 (ENSNSUG00000003778) #8	INTS14 (ENSNSUG00000003780) #9	ENSNSUG00000003906 #11	RAB11A (ENSNSUG00000003908) #12	MEGF11 (ENSNSUG00000003910) #13	ENSNSUG00000003922 #14	TIPIN (ENSNSUG00000003924) #15	MAP2K1 (ENSNSUG00000003931) #16	SNAPC5 (ENSNSUG00000003966) #17	ENSNSUG00000003967 #18	ZWILCH (ENSNSUG00000003975) #19	SMAD3 (ENSNSUG00000003978) #22	AAGAB (ENSNSUG00000003997) #23	C15orf61 (ENSNSUG00000004019) #25	MAP2K5 (ENSNSUG00000004022) #26
Mainland tiger snake	MODERN SPECIES	15	ELAC1 (ENSNSUG00000013099)	ME2 (ENSNSUG00000013096)	MAPK4 (ENSNSUG00000013095)	ENSNSUG00000013094	ENSNSUG00000013093	ENSNSUG00000013092	ENSNSUG00000013091	ENSNSUG00000013090	ACAA2 (ENSNSUG00000013087)	LIPG (ENSNSUG00000012949)	ENSNSUG00000012945	C18orf32 (ENSNSUG00000012944)	DYM (ENSNSUG00000012943)	SMAD7 (ENSNSUG00000012942)	CTIF (ENSNSUG00000012893)	ENSNSUG00000012891 #22
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00960000193170	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00950000186456	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043
Goode s thornscrub tortoise	MODERN SPECIES	1	HACD3 (ENSGEVG00005006129) #8	INTS14 (ENSGEVG00005006084) #9	SLC24A1 (ENSGEVG00005006015) #10	DENND4A (ENSGEVG00005005910) #11	RAB11A (ENSGEVG00005005859) #12	ENSGEVG00005005833	MEGF11 (ENSGEVG00005005633) #13	DIS3L (ENSGEVG00005005574) #14	TIPIN (ENSGEVG00005005547) #15	MAP2K1 (ENSGEVG00005005509) #16	SNAPC5 (ENSGEVG00005005478) #17	RPL4 (ENSGEVG00005005421) #18	ZWILCH (ENSGEVG00005005317) #19	LCTL (ENSGEVG00005005207) #20	SMAD6 (ENSGEVG00005005184) #21	SMAD3 (ENSGEVG00005005160) #22	AAGAB (ENSGEVG00005005135) #23	ENSGEVG00005005107	IQCH (ENSGEVG00005005068) #24	C15orf61 (ENSGEVG00005005051) #25	MAP2K5 (ENSGEVG00005004903) #26	SKOR1 (ENSGEVG00005004798) #27	PIAS1 (ENSGEVG00005004663) #28	CALML4 (ENSGEVG00005004576) #30	CLN6 (ENSGEVG00005004545) #31	FEM1B (ENSGEVG00005004527) #32	ITGA11 (ENSGEVG00005004365) #33	CORO2B (ENSGEVG00005004248) #34	ENSGEVG00005004193 #35	NOX5 (ENSGEVG00005004166)	GLCE (ENSGEVG00005004077)
Abingdon island giant tortoise	MODERN SPECIES	2468						ATXN1 (ENSCABG00000005586)	ENSCABG00000005592	RBM24 (ENSCABG00000005598)	CAP2 (ENSCABG00000005601)	FAM8A1 (ENSCABG00000005603)	NUP153 (ENSCABG00000005639)	ENSCABG00000006965	PAK1IP1 (ENSCABG00000006969)	TMEM14C (ENSCABG00000006974)	ENSCABG00000006977	SMAD3 (ENSCABG00000006979) #22	AAGAB (ENSCABG00000006983) #23	IQCH (ENSCABG00000006989) #24	C15orf61 (ENSCABG00000007006) #25	MAP2K5 (ENSCABG00000007008) #26	SKOR1 (ENSCABG00000007009) #27	PIAS1 (ENSCABG00000007017) #28	CALML4 (ENSCABG00000007026) #30	CLN6 (ENSCABG00000007043) #31	FEM1B (ENSCABG00000007048) #32	ITGA11 (ENSCABG00000007055) #33	CORO2B (ENSCABG00000007062) #34	ENSCABG00000007077 #35	NOX5 (ENSCABG00000007079)	GLCE (ENSCABG00000007080)	ENSCABG00000007082
Emydidae	ANCESTRAL SPECIES	21	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764.b #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
painted turtle	MODERN SPECIES	742															SMAD6 (ENSCPBG00000025564) #21	SMAD3 (ENSCPBG00000025562) #22	AAGAB (ENSCPBG00000025560) #23	IQCH (ENSCPBG00000025554) #24	C15orf61 (ENSCPBG00000025551) #25	MAP2K5 (ENSCPBG00000025545) #26	SKOR1 (ENSCPBG00000025542) #27	PIAS1 (ENSCPBG00000025540) #28	CALML4 (ENSCPBG00000025539) #30	CLN6 (ENSCPBG00000025538) #31	FEM1B (ENSCPBG00000025536) #32	ITGA11 (ENSCPBG00000025526) #33	CORO2B (ENSCPBG00000025523) #34	ENSCPBG00000025519 #35	NOX5 (ENSCPBG00000025517)	GLCE (ENSCPBG00000025514)	PAQR5 (ENSCPBG00000025513)
Three-toed box turtle	MODERN SPECIES	27	DPP8 (ENSTMTG00000007513) #7	HACD3 (ENSTMTG00000007567) #8	INTS14 (ENSTMTG00000007590) #9	SLC24A1 (ENSTMTG00000007638) #10	DENND4A (ENSTMTG00000007680) #11	RAB11A (ENSTMTG00000007735) #12	MEGF11 (ENSTMTG00000007756) #13	DIS3L (ENSTMTG00000007906) #14	ENSTMTG00000007940 #15	MAP2K1 (ENSTMTG00000007966) #16	ENSTMTG00000007987	ENSTMTG00000008003 #18	ZWILCH (ENSTMTG00000008057) #19	LCTL (ENSTMTG00000008371) #20	SMAD6 (ENSTMTG00000008403) #21	SMAD3 (ENSTMTG00000008413) #22	AAGAB (ENSTMTG00000008426) #23	IQCH (ENSTMTG00000008467) #24	ENSTMTG00000008700 #25	MAP2K5 (ENSTMTG00000008725) #26	SKOR1 (ENSTMTG00000008807) #27	PIAS1 (ENSTMTG00000008856) #28	CALML4 (ENSTMTG00000008891) #30	CLN6 (ENSTMTG00000008908) #31	FEM1B (ENSTMTG00000008924) #32	ITGA11 (ENSTMTG00000008937) #33	ENSTMTG00000009016 #34	ENSTMTG00000009040 #35	NOX5 (ENSTMTG00000009057)	GLCE (ENSTMTG00000009094)	PAQR5 (ENSTMTG00000009106)
Chinese turtle	MODERN SPECIES	1779																SMAD3 (ENSPSIG00000010579) #22	AAGAB (ENSPSIG00000011201) #23	IQCH (ENSPSIG00000011323) #24	MAP2K5 (ENSPSIG00000011712) #26	PIAS1 (ENSPSIG00000012489) #28	CALML4 (ENSPSIG00000012516) #30	CLN6 (ENSPSIG00000012575) #31	FEM1B (ENSPSIG00000012891) #32	ITGA11 (ENSPSIG00000012913) #33	CORO2B (ENSPSIG00000014178) #34	ENSPSIG00000014700 #35	NOX5 (ENSPSIG00000014865)	GLCE (ENSPSIG00000015287)	PAQR5 (ENSPSIG00000015595)	KIF23 (ENSPSIG00000015679)	ENSPSIG00000016179
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Australian saltwater crocodile	MODERN SPECIES	31	HACD3 (ENSCPRG00005000454) #8	INTS14 (ENSCPRG00005000472) #9	ENSCPRG00005000476 #10	ENSCPRG00005000484 #10	DENND4A (ENSCPRG00005000499) #11	RAB11A (ENSCPRG00005000532) #12	MEGF11 (ENSCPRG00005000552) #13	DIS3L (ENSCPRG00005000594) #14	TIPIN (ENSCPRG00005000607) #15	MAP2K1 (ENSCPRG00005000623) #16	SNAPC5 (ENSCPRG00005000626) #17	RPL4 (ENSCPRG00005000630) #18	ZWILCH (ENSCPRG00005000651) #19	LCTL (ENSCPRG00005000669) #20	SMAD6 (ENSCPRG00005000698) #21	SMAD3 (ENSCPRG00005000730) #22	AAGAB (ENSCPRG00005000756) #23	IQCH (ENSCPRG00005000770) #24	C15orf61 (ENSCPRG00005000791) #25	MAP2K5 (ENSCPRG00005000813) #26	PIAS1 (ENSCPRG00005000826) #28	CALML4 (ENSCPRG00005000835) #30	CLN6 (ENSCPRG00005000877) #31	ENSCPRG00005000881	ITGA11 (ENSCPRG00005000885) #33	CORO2B (ENSCPRG00005000933) #34	ENSCPRG00005000951 #35	ENSCPRG00005000961	NOX5 (ENSCPRG00005000970)	ENSCPRG00005000980	GLCE (ENSCPRG00005000985)
Aves	ANCESTRAL SPECIES	14	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
African ostrich	MODERN SPECIES	336												MAP2K1 (ENSSCUG00000002980) #16	ENSSCUG00000002979	RPL4 (ENSSCUG00000002974) #18	ZWILCH (ENSSCUG00000002970) #19	SMAD3 (ENSSCUG00000002964) #22	ENSSCUG00000002962 #23	IQCH (ENSSCUG00000002961) #24	ENSSCUG00000002960	ENSSCUG00000002959	MAP2K5 (ENSSCUG00000002958) #26	PIAS1 (ENSSCUG00000002957) #28	CALML4 (ENSSCUG00000002956) #30	CLN6 (ENSSCUG00000002955) #31	ENSSCUG00000002954	ITGA11 (ENSSCUG00000002951) #33	ENSSCUG00000002948 #35	GLCE (ENSSCUG00000002945)	ENSSCUG00000002943	ENSSCUG00000002941	KIF23 (ENSSCUG00000002925)
Neognathae	ANCESTRAL SPECIES	11	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Chicken	MODERN SPECIES	1	IGDCC4 (ENSGALG00010017782)	DPP8 (ENSGALG00010017805) #7	HACD3 (ENSGALG00010017811) #8	VWA9 (ENSGALG00010017815) #9	SLC24A1 (ENSGALG00010017819) #10	DENND4A (ENSGALG00010017830) #11	RAB11A (ENSGALG00010017870) #12	MEGF11 (ENSGALG00010017904) #13	DIS3L (ENSGALG00010017941) #14	TIPIN (ENSGALG00010017956) #15	MAP2K1 (ENSGALG00010018000) #16	SNAPC5 (ENSGALG00010018020) #17	RPL4 (ENSGALG00010018036) #18	ZWILCH (ENSGALG00010018042) #19	SMAD6 (ENSGALG00010018054) #21	SMAD3 (ENSGALG00010018099) #22	AAGAB (ENSGALG00010018150) #23	IQCH (ENSGALG00010018192) #24	C15orf61 (ENSGALG00010016968) #25	MAP2K5 (ENSGALG00010017039) #26	SKOR1 (ENSGALG00010017146) #27	PIAS1 (ENSGALG00010017264) #28	CALML4 (ENSGALG00010017314) #30	CLN6 (ENSGALG00010017327) #31	FEM1B (ENSGALG00010017354) #32	ENSGALG00010017382	ITGA11 (ENSGALG00010017403) #33	CORO2B (ENSGALG00010017482) #34	ANP32A (ENSGALG00010017558) #35	NOX5 (ENSGALG00010017588)	GLCE (ENSGALG00010016452)
Turkey	MODERN SPECIES	3	IGDCC4 (ENSMGAG00000009630)	DPP8 (ENSMGAG00000009649) #7	HACD3 (ENSMGAG00000009683) #8	INTS14 (ENSMGAG00000009693) #9	SLC24A1 (ENSMGAG00000009715) #10	DENND4A (ENSMGAG00000009728) #11	RAB11A (ENSMGAG00000009797) #12	MEGF11 (ENSMGAG00000009776) #13	DIS3L (ENSMGAG00000009805) #14	TIPIN (ENSMGAG00000009857) #15	MAP2K1 (ENSMGAG00000009864) #16	ENSMGAG00000019153	RPL4 (ENSMGAG00000009822) #18	ZWILCH (ENSMGAG00000009851) #19	SMAD6 (ENSMGAG00000009875) #21	SMAD3 (ENSMGAG00000009879) #22	AAGAB (ENSMGAG00000009906) #23	IQCH (ENSMGAG00000009928) #24	C15orf61 (ENSMGAG00000022676) #25	MAP2K5 (ENSMGAG00000009937) #26	PIAS1 (ENSMGAG00000009994) #28	CALML4 (ENSMGAG00000010048) #30	CLN6 (ENSMGAG00000010054) #31	ENSMGAG00000010069	ITGA11 (ENSMGAG00000010073) #33	CORO2B (ENSMGAG00000010149) #34	ENSMGAG00000010171 #35	NOX5 (ENSMGAG00000010183)	GLCE (ENSMGAG00000010210)	PAQR5 (ENSMGAG00000010133)	KIF23 (ENSMGAG00000010217)
Japanese quail	MODERN SPECIES	1	IGDCC4 (ENSCJPG00005020763)	DPP8 (ENSCJPG00005020764) #7	HACD3 (ENSCJPG00005020802) #8	INTS14 (ENSCJPG00005020803) #9	SLC24A1 (ENSCJPG00005020804) #10	DENND4A (ENSCJPG00005020807) #11	RAB11A (ENSCJPG00005020908) #12	MEGF11 (ENSCJPG00005020910) #13	DIS3L (ENSCJPG00005020941) #14	TIPIN (ENSCJPG00005020942) #15	MAP2K1 (ENSCJPG00005020944) #16	SNAPC5 (ENSCJPG00005020958) #17	RPL4 (ENSCJPG00005020961) #18	ZWILCH (ENSCJPG00005020968) #19	SMAD6 (ENSCJPG00005020969) #21	SMAD3 (ENSCJPG00005020970) #22	AAGAB (ENSCJPG00005020971) #23	IQCH (ENSCJPG00005020972) #24	C15orf61 (ENSCJPG00005020973) #25	MAP2K5 (ENSCJPG00005020975) #26	SKOR1 (ENSCJPG00005020991) #27	PIAS1 (ENSCJPG00005020993) #28	CALML4 (ENSCJPG00005020995) #30	CLN6 (ENSCJPG00005020996) #31	FEM1B (ENSCJPG00005020997) #32	ITGA11 (ENSCJPG00005020998) #33	CORO2B (ENSCJPG00005020999) #34	ENSCJPG00005021000 #35	GLCE (ENSCJPG00005021002)	PAQR5 (ENSCJPG00005021003)	KIF23 (ENSCJPG00005021004)
Anatidae	ANCESTRAL SPECIES	36	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689.c #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844	ENSGT00940000155837
Duck	MODERN SPECIES	2	DPP8 (ENSAPLG00000013345) #7	HACD3 (ENSAPLG00000013863) #8	INTS14 (ENSAPLG00000014064) #9	SLC24A1 (ENSAPLG00000014168) #10	DENND4A (ENSAPLG00000014243) #11	RAB11A (ENSAPLG00000014962) #12	MEGF11 (ENSAPLG00000015095) #13	DIS3L (ENSAPLG00000015294) #14	TIPIN (ENSAPLG00000015332) #15	MAP2K1 (ENSAPLG00000015480) #16	SNAPC5 (ENSAPLG00000001863) #17	RPL4 (ENSAPLG00000015853) #18	ZWILCH (ENSAPLG00000000968) #19	ENSAPLG00000028241 #20	SMAD6 (ENSAPLG00000000997) #21	SMAD3 (ENSAPLG00000007006) #22	AAGAB (ENSAPLG00000007346) #23	IQCH (ENSAPLG00000007592) #24	C15orf61 (ENSAPLG00000001076) #25	MAP2K5 (ENSAPLG00000007755) #26	ENSAPLG00000002495 #28	CALML4 (ENSAPLG00000003092) #30	CLN6 (ENSAPLG00000003181) #31	FEM1B (ENSAPLG00000003592) #32	ITGA11 (ENSAPLG00000003663) #33	ENSAPLG00000029500 #34	CORO2B (ENSAPLG00000027282) #34	ENSAPLG00000016831 #35	NOX5 (ENSAPLG00000005589)	GLCE (ENSAPLG00000005999)	ENSAPLG00000018841
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	52	HACD3 (ENSABRG00000008901) #8	INTS14 (ENSABRG00000008861) #9	SLC24A1 (ENSABRG00000008827) #10	DENND4A (ENSABRG00000008768) #11	RAB11A (ENSABRG00000008748) #12	MEGF11 (ENSABRG00000008723) #13	DIS3L (ENSABRG00000008682) #14	TIPIN (ENSABRG00000008669) #15	ENSABRG00000008668	MAP2K1 (ENSABRG00000008635) #16	SNAPC5 (ENSABRG00000008617) #17	RPL4 (ENSABRG00000008586) #18	ZWILCH (ENSABRG00000008567) #19	LCTL (ENSABRG00000008534) #20	SMAD6 (ENSABRG00000008516) #21	SMAD3 (ENSABRG00000008486) #22	AAGAB (ENSABRG00000008468) #23	IQCH (ENSABRG00000008459) #24	C15orf61 (ENSABRG00000008455) #25	MAP2K5 (ENSABRG00000008420) #26	PIAS1 (ENSABRG00000008359) #28	CALML4 (ENSABRG00000008336) #30	CLN6 (ENSABRG00000008307) #31	ENSABRG00000008298	ITGA11 (ENSABRG00000007970) #33	CORO2B (ENSABRG00000007931) #34	ENSABRG00000007925 #35	ENSABRG00000007920	NOX5 (ENSABRG00000007909)	GLCE (ENSABRG00000007906)	PAQR5 (ENSABRG00000007901)
Pink-footed goose	MODERN SPECIES	326															ZBTB7C (ENSABRG00000011627)	ENSABRG00000011637 #22	SMAD2 (ENSABRG00000011646) ##22	IER3IP1 (ENSABRG00000011660)	HDHD2 (ENSABRG00000011673)
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Great tit	MODERN SPECIES	1	DPP8 (ENSPMJG00000009912) #7	HACD3 (ENSPMJG00000009915) #8	INTS14 (ENSPMJG00000009916) #9	SLC24A1 (ENSPMJG00000009917) #10	DENND4A (ENSPMJG00000009918) #11	RAB11A (ENSPMJG00000009921) #12	MEGF11 (ENSPMJG00000009924) #13	DIS3L (ENSPMJG00000009931) #14	TIPIN (ENSPMJG00000009939) #15	MAP2K1 (ENSPMJG00000009964) #16	SNAPC5 (ENSPMJG00000009967) #17	RPL4 (ENSPMJG00000009971) #18	ZWILCH (ENSPMJG00000009977) #19	LCTL (ENSPMJG00000009979) #20	SMAD6 (ENSPMJG00000009983) #21	SMAD3 (ENSPMJG00000009991) #22	AAGAB (ENSPMJG00000009992) #23	IQCH (ENSPMJG00000009995) #24	C15orf61 (ENSPMJG00000009998) #25	MAP2K5 (ENSPMJG00000010012) #26	PIAS1 (ENSPMJG00000010016) #28	ENSPMJG00000010020 #30	FEM1B (ENSPMJG00000010022) #32	ITGA11 (ENSPMJG00000010024) #33	ENSPMJG00000010045 #34	ENSPMJG00000010057 #34	ENSPMJG00000010061 #35	NOX5 (ENSPMJG00000010066)	GLCE (ENSPMJG00000010071)	KIF23 (ENSPMJG00000010072)	TLE3 (ENSPMJG00000010074)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Flycatcher	MODERN SPECIES	1	FOXB1 (ENSFALG00000012555)	ANXA2 (ENSFALG00000028021)	ICE2 (ENSFALG00000012586)	ENSFALG00000026543	RORA (ENSFALG00000012589)	VPS13C (ENSFALG00000012641)	ENSFALG00000012743	TLN2 (ENSFALG00000012750)	TPM1 (ENSFALG00000026833)	LACTB (ENSFALG00000012785)	RPL4 (ENSFALG00000024664) #18	ZWILCH (ENSFALG00000012802) #19	LCTL (ENSFALG00000012819) #20	ENSFALG00000023761	SMAD6 (ENSFALG00000012842) #21	SMAD3 (ENSFALG00000028582) #22	AAGAB (ENSFALG00000028875) #23	IQCH (ENSFALG00000012896) #24	ENSFALG00000012905	MAP2K5 (ENSFALG00000028460) #26	PIAS1 (ENSFALG00000010137) #28	ENSFALG00000028365	CALML4 (ENSFALG00000010143) #30	CLN6 (ENSFALG00000023153) #31	FEM1B (ENSFALG00000010149) #32	ITGA11 (ENSFALG00000010154) #33	CORO2B (ENSFALG00000010159) #34	ENSFALG00000026588 #35	NOX5 (ENSFALG00000026351)	ENSFALG00000010185	PAQR5 (ENSFALG00000024286)
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT01060000252718	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240.oc #31	ENSGT00940000164138	ENSGT00400000022240.nc #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591
Medium ground finch	MODERN SPECIES	69	DPP8 (ENSGFOG00000010227) #7	HACD3 (ENSGFOG00000010246) #8	INTS14 (ENSGFOG00000010255) #9	SLC24A1 (ENSGFOG00000010269) #10	DENND4A (ENSGFOG00000010346) #11	RAB11A (ENSGFOG00000011557) #12	MEGF11 (ENSGFOG00000011585) #13	DIS3L (ENSGFOG00000011782) #14	TIPIN (ENSGFOG00000011794) #15	MAP2K1 (ENSGFOG00000011801) #16	ENSGFOG00000011806	RPL4 (ENSGFOG00000011811) #18	ZWILCH (ENSGFOG00000011836) #19	LCTL (ENSGFOG00000011846) #20	SMAD6 (ENSGFOG00000011856) #21	SMAD3 (ENSGFOG00000011865) #22	ENSGFOG00000011872 #23	ENSGFOG00000011876 #23	IQCH (ENSGFOG00000011884) #24	ENSGFOG00000011897 #25	MAP2K5 (ENSGFOG00000011911) #26	PIAS1 (ENSGFOG00000011939) #28	CALML4 (ENSGFOG00000011946) #30	CLN6 (ENSGFOG00000011952) #31	ENSGFOG00000011958	ITGA11 (ENSGFOG00000011965) #33	CORO2B (ENSGFOG00000011982) #34	ENSGFOG00000011990 #35	NOX5 (ENSGFOG00000011998)	GLCE (ENSGFOG00000012008)	ENSGFOG00000012011
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT01060000252718	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00960000188521	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240.nc #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043.e	ENSGT00990000212087
Common canary	MODERN SPECIES	12	INTS14 (ENSSCAG00000010200) #9	SLC24A1 (ENSSCAG00000010206) #10	DENND4A (ENSSCAG00000010214) #11	RAB11A (ENSSCAG00000010226) #12	MEGF11 (ENSSCAG00000010255) #13	DIS3L (ENSSCAG00000010324) #14	TIPIN (ENSSCAG00000010328) #15	MAP2K1 (ENSSCAG00000010333) #16	ENSSCAG00000010341	RPL4 (ENSSCAG00000010344) #18	ZWILCH (ENSSCAG00000010364) #19	LCTL (ENSSCAG00000010374) #20	ENSSCAG00000010394	ENSSCAG00000010404	SMAD6 (ENSSCAG00000010407) #21	SMAD3 (ENSSCAG00000010414) #22	AAGAB (ENSSCAG00000010418) #23	IQCH (ENSSCAG00000010432) #24	ENSSCAG00000010438	MAP2K5 (ENSSCAG00000010448) #26	PIAS1 (ENSSCAG00000010481) #28	CALML4 (ENSSCAG00000010490) #30	ENSSCAG00000010493 #31	ENSSCAG00000010498 #31	ENSSCAG00000010505	ITGA11 (ENSSCAG00000010528) #33	CORO2B (ENSSCAG00000010620) #34	ENSSCAG00000010637 #35	NOX5 (ENSSCAG00000010650)	GLCE (ENSSCAG00000010658)	ENSSCAG00000010664
Zebra finch	MODERN SPECIES	1	DPP8 (ENSTGUG00000009145) #7	HACD3 (ENSTGUG00000009174) #8	INTS14 (ENSTGUG00000009182) #9	SLC24A1 (ENSTGUG00000009206) #10	DENND4A (ENSTGUG00000009220) #11	RAB11A (ENSTGUG00000009279) #12	MEGF11 (ENSTGUG00000009293) #13	DIS3L (ENSTGUG00000009315) #14	TIPIN (ENSTGUG00000009358) #15	ENSTGUG00000019914	MAP2K1 (ENSTGUG00000009363) #16	RPL4 (ENSTGUG00000009403) #18	ZWILCH (ENSTGUG00000009439) #19	LCTL (ENSTGUG00000009457) #20	SMAD6 (ENSTGUG00000009467) #21	SMAD3 (ENSTGUG00000009470) #22	AAGAB (ENSTGUG00000009497) #23	IQCH (ENSTGUG00000009504) #24	ENSTGUG00000009527	MAP2K5 (ENSTGUG00000009531) #26	ENSTGUG00000025021 #27	ENSTGUG00000009553 #28	ENSTGUG00000029271 #30	ENSTGUG00000021449 #31	ENSTGUG00000024498 #32	ENSTGUG00000009614 #33	ENSTGUG00000020847 #34	ANP32A (ENSTGUG00000009670) #35	ENSTGUG00000026437	ENSTGUG00000019518	ENSTGUG00000024602
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Kakapo	MODERN SPECIES	1	HACD3 (ENSSHBG00005009669) #8	INTS14 (ENSSHBG00005009649) #9	SLC24A1 (ENSSHBG00005009620) #10	DENND4A (ENSSHBG00005009346) #11	RAB11A (ENSSHBG00005009201) #12	ENSSHBG00005009181 #13	ENSSHBG00005009158 #13	DIS3L (ENSSHBG00005009084) #14	TIPIN (ENSSHBG00005009068) #15	MAP2K1 (ENSSHBG00005009053) #16	SNAPC5 (ENSSHBG00005009047) #17	RPL4 (ENSSHBG00005009017) #18	ZWILCH (ENSSHBG00005008951) #19	LCTL (ENSSHBG00005008922) #20	SMAD6 (ENSSHBG00005000779) #21	SMAD3 (ENSSHBG00005000770) #22	AAGAB (ENSSHBG00005000737) #23	IQCH (ENSSHBG00005000728) #24	C15orf61 (ENSSHBG00005000716) #25	MAP2K5 (ENSSHBG00005000699) #26	SKOR1 (ENSSHBG00005011833) #27	PIAS1 (ENSSHBG00005011813) #28	CALML4 (ENSSHBG00005011797) #30	CLN6 (ENSSHBG00005011786) #31	FEM1B (ENSSHBG00005011772) #32	ITGA11 (ENSSHBG00005011743) #33	CORO2B (ENSSHBG00005011717) #34	ENSSHBG00005011703 #35	NOX5 (ENSSHBG00005011668)	GLCE (ENSSHBG00005011650)	PAQR5 (ENSSHBG00005011637)
Golden eagle	MODERN SPECIES	21	DPP8 (ENSACCG00020009512) #7	HACD3 (ENSACCG00020009900) #8	INTS14 (ENSACCG00020009917) #9	SLC24A1 (ENSACCG00020009936) #10	DENND4A (ENSACCG00020009959) #11	RAB11A (ENSACCG00020009992) #12	MEGF11 (ENSACCG00020010081) #13	DIS3L (ENSACCG00020010156) #14	TIPIN (ENSACCG00020010172) #15	MAP2K1 (ENSACCG00020010187) #16	SNAPC5 (ENSACCG00020010201) #17	RPL4 (ENSACCG00020000310) #18	ZWILCH (ENSACCG00020000434) #19	LCTL (ENSACCG00020000480) #20	SMAD6 (ENSACCG00020000507) #21	SMAD3 (ENSACCG00020000522) #22	AAGAB (ENSACCG00020000560) #23	C15orf61 (ENSACCG00020000661) #25	MAP2K5 (ENSACCG00020000704) #26	SKOR1 (ENSACCG00020000753) #27	PIAS1 (ENSACCG00020000781) #28	CALML4 (ENSACCG00020000839) #30	CLN6 (ENSACCG00020000865) #31	FEM1B (ENSACCG00020000880) #32	ITGA11 (ENSACCG00020001060) #33	CORO2B (ENSACCG00020001194) #34	ENSACCG00020001229 #35	NOX5 (ENSACCG00020001264)	GLCE (ENSACCG00020001293)	PAQR5 (ENSACCG00020001307)	KIF23 (ENSACCG00020001359)
Anura	ANCESTRAL SPECIES		ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #19	ENSGT00940000157369 #20	ENSGT00940000158146 #21	ENSGT00940000153499.b.b #22	ENSGT00390000007218 #23	ENSGT00390000008908 #24	ENSGT00390000015942 #25	ENSGT00940000157505 #26	ENSGT00940000158440 #27	ENSGT01030000234539.a.a.b.a.b #28	ENSGT00940000157859 #30	ENSGT00400000022240 #31	ENSGT00940000161115 #32	ENSGT00940000155465 #33	ENSGT00940000158689 #34	ENSGT00950000182907.a.b.b.b #35	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844
Frog	MODERN SPECIES	3	dpp8 (ENSXETG00000006646) #7	hacd3 (ENSXETG00000030041) #8	ints14 (ENSXETG00000006644) #9	slc24a1 (ENSXETG00000033301) #10	dennd4a (ENSXETG00000006641) #11	rab11a (ENSXETG00000006639) #12	megf11 (ENSXETG00000015852) #13	dis3l (ENSXETG00000015865) #14	tipin (ENSXETG00000024752) #15	map2k1 (ENSXETG00000015887) #16	snapc5 (ENSXETG00000015893)	rpl4 (ENSXETG00000015898) #18	zwilch (ENSXETG00000015894) #19	lctl (ENSXETG00000015904) #20	smad6 (ENSXETG00000015939) #21	smad3 (ENSXETG00000007804) #22	aagab (ENSXETG00000007805) #23	pnlip (ENSXETG00000007807) #24	c15orf61 (ENSXETG00000030493) #25	map2k5 (ENSXETG00000007809) #26	ENSXETG00000044421	skor1 (ENSXETG00000007811) #27	pias1 (ENSXETG00000007813) #28	calml4 (ENSXETG00000007814) #30	cln6 (ENSXETG00000029932) #31	ENSXETG00000044370	fem1b (ENSXETG00000007817)	itga11 (ENSXETG00000007816) #33	coro2b (ENSXETG00000025308) #34	anp32a (ENSXETG00000007821) #35	nox5 (ENSXETG00000007819)
Leishan spiny toad	MODERN SPECIES	6	SLC24A1 (ENSLLEG00000006354) #10	DENND4A (ENSLLEG00000006505) #11	RAB11A (ENSLLEG00000007065) #12	MEGF11 (ENSLLEG00000007218) #13	ENSLLEG00000007739	DIS3L (ENSLLEG00000007758) #14	TIPIN (ENSLLEG00000007891) #15	ENSLLEG00000007941 #16	SNAPC5 (ENSLLEG00000008005) #17	ENSLLEG00000008024	ENSLLEG00000008052 #18	ZWILCH (ENSLLEG00000008260) #19	LCTL (ENSLLEG00000008419) #20	ENSLLEG00000009059	SMAD6 (ENSLLEG00000009090) #21	SMAD3 (ENSLLEG00000009194) #22	AAGAB (ENSLLEG00000009905) #23	IQCH (ENSLLEG00000009988) #24	C15orf61 (ENSLLEG00000010164) #25	MAP2K5 (ENSLLEG00000010224) #26	SKOR1 (ENSLLEG00000010653) #27	ENSLLEG00000010729	PIAS1 (ENSLLEG00000010874) #28	CALML4 (ENSLLEG00000011194) #30	CLN6 (ENSLLEG00000011246) #31	FEM1B (ENSLLEG00000011357) #32	ITGA11 (ENSLLEG00000011407) #33	ENSLLEG00000011591	CORO2B (ENSLLEG00000011668) #34	ENSLLEG00000012168 #35	NOX5 (ENSLLEG00000012326)
Coelacanth	MODERN SPECIES	951															SMAD6 (ENSLACG00000005364) #21	SMAD3 (ENSLACG00000010552) #22	AAGAB (ENSLACG00000011060) #23	IQCH (ENSLACG00000011619) #24	C15orf61 (ENSLACG00000012466) #25	MAP2K5 (ENSLACG00000012658) #26	SKOR1 (ENSLACG00000014295) #27