Gnathostomata	ANCESTRAL SPECIES	1184																ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23
Euteleostomi	ANCESTRAL SPECIES	163														ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000173220	ENSGT00390000012605	ENSGT00940000158312	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00530000063870.b	ENSGT00530000063870.a.b
Sarcopterygii	ANCESTRAL SPECIES	248													ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396
Tetrapoda	ANCESTRAL SPECIES	53	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396
Amniota	ANCESTRAL SPECIES	11	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT01010000222629	ENSGT00930000151045
Mammalia	ANCESTRAL SPECIES	43	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.h	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a
Theria	ANCESTRAL SPECIES	10	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a
Eutheria	ANCESTRAL SPECIES	23	ENSGT00940000163349	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a	ENSGT00940000153095.g.b.a.a.b
Primates	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Haplorrhini	ANCESTRAL SPECIES	24	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Simiiformes	ANCESTRAL SPECIES	19	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Hominidae	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.b.a	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b
Orangutan	MODERN SPECIES	7	TPSD1 (ENSPPYG00000006943) #7	ENSPPYG00000035138 #8	TSR3 (ENSPPYG00000034811) #9	GNPTG (ENSPPYG00000006949) #10	UNKL (ENSPPYG00000006950) #11	UQCC4 (ENSPPYG00000006951) #12	PERCC1 (ENSPPYG00000006952) #13	CCDC154 (ENSPPYG00000006953) #14	CLCN7 (ENSPPYG00000006954) #15	PTX4 (ENSPPYG00000035702) #16	TELO2 (ENSPPYG00000006955) #17	IFT140 (ENSPPYG00000006956) #18	TMEM204 (ENSPPYG00000006957) #19	CRAMP1 (ENSPPYG00000006958) #20	JPT2 (ENSPPYG00000006959) #21	MAPK8IP3 (ENSPPYG00000006960) #22	NME3 (ENSPPYG00000032952) #23	MRPS34 (ENSPPYG00000006962) #24	EME2 (ENSPPYG00000035411) #25	SPSB3 (ENSPPYG00000006963) #26	ENSPPYG00000006964 #27	IGFALS (ENSPPYG00000006965) #28	HAGH (ENSPPYG00000006966) #29	FAHD1 (ENSPPYG00000037970) #30	ENSPPYG00000006968 #31	HS3ST6 (ENSPPYG00000006971) #32	MSRB1 (ENSPPYG00000041142) #33	ENSPPYG00000029764 #34	NDUFB10 (ENSPPYG00000006974) #35	ENSPPYG00000030067 #36	TBL3 (ENSPPYG00000006977) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	24	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Gorilla	MODERN SPECIES	7	BAIAP3 (ENSGGOG00000011646)	TSR3 (ENSGGOG00000011679) #9	GNPTG (ENSGGOG00000016320) #10	ENSGGOG00000040860	UNKL (ENSGGOG00000014915) #11	UQCC4 (ENSGGOG00000036674) #12	PERCC1 (ENSGGOG00000014929) #13	CCDC154 (ENSGGOG00000014932) #14	ENSGGOG00000014942 #15	PTX4 (ENSGGOG00000005872) #16	TELO2 (ENSGGOG00000005878) #17	IFT140 (ENSGGOG00000005889) #18	TMEM204 (ENSGGOG00000005903) #19	CRAMP1 (ENSGGOG00000006181) #20	JPT2 (ENSGGOG00000006200) #21	MAPK8IP3 (ENSGGOG00000006208) #22	NME3 (ENSGGOG00000006229) #23	MRPS34 (ENSGGOG00000006234) #24	EME2 (ENSGGOG00000006238) #25	SPSB3 (ENSGGOG00000006245) #26	NUBP2 (ENSGGOG00000006254) #27	IGFALS (ENSGGOG00000006268) #28	HAGH (ENSGGOG00000012252) #29	FAHD1 (ENSGGOG00000024697) #30	ENSGGOG00000012261 #31	HS3ST6 (ENSGGOG00000009361) #32	ENSGGOG00000022794 #33	RPL3L (ENSGGOG00000009364) #34	NDUFB10 (ENSGGOG00000009367) #35	RPS2 (ENSGGOG00000009371)	TBL3 (ENSGGOG00000009378) #37
Homo/Pan group	ANCESTRAL SPECIES	23	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Human	MODERN SPECIES	7	UBE2I (ENSG00000103275) #8	BAIAP3 (ENSG00000007516)	TSR3 (ENSG00000007520) #9	GNPTG (ENSG00000090581) #10	UNKL (ENSG00000059145) #11	UQCC4 (ENSG00000174109) #12	PERCC1 (ENSG00000284395) #13	CCDC154 (ENSG00000197599) #14	CLCN7 (ENSG00000103249) #15	PTX4 (ENSG00000251692) #16	TELO2 (ENSG00000100726) #17	IFT140 (ENSG00000187535) #18	TMEM204 (ENSG00000131634) #19	CRAMP1 (ENSG00000007545) #20	JPT2 (ENSG00000206053) #21	MAPK8IP3 (ENSG00000138834) #22	NME3 (ENSG00000103024) #23	MRPS34 (ENSG00000074071) #24	EME2 (ENSG00000197774) #25	SPSB3 (ENSG00000162032) #26	NUBP2 (ENSG00000095906) #27	IGFALS (ENSG00000099769) #28	HAGH (ENSG00000063854) #29	FAHD1 (ENSG00000180185) #30	MEIOB (ENSG00000162039) #31	ENSG00000289722 #31	HS3ST6 (ENSG00000162040) #32	MSRB1 (ENSG00000198736) #33	RPL3L (ENSG00000140986) #34	NDUFB10 (ENSG00000140990) #35	RPS2 (ENSG00000140988)
Pan	ANCESTRAL SPECIES	28	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00530000063647.A.a
Bonobo	MODERN SPECIES	7	BAIAP3 (ENSPPAG00000029908)	ENSPPAG00000032379 #9	GNPTG (ENSPPAG00000040528) #10	ENSPPAG00000032844	UNKL (ENSPPAG00000043365) #11	UQCC4 (ENSPPAG00000035290) #12	PERCC1 (ENSPPAG00000011265) #13	CCDC154 (ENSPPAG00000039800) #14	CLCN7 (ENSPPAG00000035677) #15	PTX4 (ENSPPAG00000012282) #16	TELO2 (ENSPPAG00000031847) #17	IFT140 (ENSPPAG00000041233) #18	TMEM204 (ENSPPAG00000033773) #19	CRAMP1 (ENSPPAG00000036103) #20	JPT2 (ENSPPAG00000034952) #21	MAPK8IP3 (ENSPPAG00000034790) #22	NME3 (ENSPPAG00000030073) #23	MRPS34 (ENSPPAG00000033749) #24	EME2 (ENSPPAG00000035754) #25	SPSB3 (ENSPPAG00000023101) #26	ENSPPAG00000029613 #27	IGFALS (ENSPPAG00000025910) #28	ENSPPAG00000032337 #31	HS3ST6 (ENSPPAG00000029952) #32	ENSPPAG00000031640 #33	RPL3L (ENSPPAG00000039317) #34	NDUFB10 (ENSPPAG00000040038) #35	ENSPPAG00000028366	RNF151 (ENSPPAG00000035993)	TBL3 (ENSPPAG00000041939) #37	ENSPPAG00000030899
Chimpanzee	MODERN SPECIES	7	BAIAP3 (ENSPTRG00000007588)	TSR3 (ENSPTRG00000007589) #9	GNPTG (ENSPTRG00000007590) #10	ENSPTRG00000049802	UNKL (ENSPTRG00000007591) #11	UQCC4 (ENSPTRG00000007592) #12	PERCC1 (ENSPTRG00000052156) #13	CCDC154 (ENSPTRG00000023886) #14	CLCN7 (ENSPTRG00000007594) #15	PTX4 (ENSPTRG00000007595) #16	TELO2 (ENSPTRG00000007596) #17	IFT140 (ENSPTRG00000007600) #18	TMEM204 (ENSPTRG00000031314) #19	CRAMP1 (ENSPTRG00000007602) #20	JPT2 (ENSPTRG00000034459) #21	MAPK8IP3 (ENSPTRG00000007603) #22	NME3 (ENSPTRG00000007605) #23	MRPS34 (ENSPTRG00000007606) #24	EME2 (ENSPTRG00000007607) #25	SPSB3 (ENSPTRG00000007608) #26	NUBP2 (ENSPTRG00000007609) #27	IGFALS (ENSPTRG00000007610) #28	HAGH (ENSPTRG00000007611) #29	FAHD1 (ENSPTRG00000046890) #30	MEIOB (ENSPTRG00000007612) #31	MSRB1 (ENSPTRG00000024355) #33	RPL3L (ENSPTRG00000007617) #34	NDUFB10 (ENSPTRG00000007618) #35	ENSPTRG00000052871	RNF151 (ENSPTRG00000007620)	TBL3 (ENSPTRG00000007621) #37
Gibbon	MODERN SPECIES	8	UBE2I (ENSNLEG00000008525) #8	BAIAP3 (ENSNLEG00000008558)	ENSNLEG00000029520 #9	ENSNLEG00000008616 #10	UNKL (ENSNLEG00000008624) #11	UQCC4 (ENSNLEG00000034051) #12	ENSNLEG00000030883 #13	CCDC154 (ENSNLEG00000008642) #14	ENSNLEG00000008654 #15	ENSNLEG00000028593 #16	TELO2 (ENSNLEG00000008667) #17	TMEM204 (ENSNLEG00000008742) #19	IFT140 (ENSNLEG00000008705) #18	CRAMP1 (ENSNLEG00000008491) #20	ENSNLEG00000029033	MAPK8IP3 (ENSNLEG00000026706) #22	NME3 (ENSNLEG00000008754) #23	MRPS34 (ENSNLEG00000008766) #24	EME2 (ENSNLEG00000008769) #25	SPSB3 (ENSNLEG00000031220) #26	NUBP2 (ENSNLEG00000008782) #27	ENSNLEG00000030061	ENSNLEG00000008791 #29	FAHD1 (ENSNLEG00000008809) #30	ENSNLEG00000008811 #31	ENSNLEG00000008834 #33	RPL3L (ENSNLEG00000008850) #34	NDUFB10 (ENSNLEG00000008867) #35	RPS2 (ENSNLEG00000008877)	RNF151 (ENSNLEG00000008887)	TBL3 (ENSNLEG00000008889) #37
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Olive baboon	MODERN SPECIES	9	ENSPANG00000017869	ENSPANG00000017868	UBE2I (ENSPANG00000030254) #8	TSR3 (ENSPANG00000006419) #9	GNPTG (ENSPANG00000016391) #10	UNKL (ENSPANG00000015754) #11	UQCC4 (ENSPANG00000021088) #12	CCDC154 (ENSPANG00000019550) #14	CLCN7 (ENSPANG00000019552) #15	PTX4 (ENSPANG00000021087) #16	TELO2 (ENSPANG00000026315) #17	TMEM204 (ENSPANG00000018087) #19	IFT140 (ENSPANG00000018206) #18	CRAMP1 (ENSPANG00000017496) #20	JPT2 (ENSPANG00000016521) #21	MAPK8IP3 (ENSPANG00000018354) #22	NME3 (ENSPANG00000017598) #23	MRPS34 (ENSPANG00000020905) #24	EME2 (ENSPANG00000015752) #25	SPSB3 (ENSPANG00000018349) #26	NUBP2 (ENSPANG00000017597) #27	IGFALS (ENSPANG00000005022) #28	HAGH (ENSPANG00000000459) #29	FAHD1 (ENSPANG00000015411) #30	ENSPANG00000034551 #31	HS3ST6 (ENSPANG00000007025) #32	ENSPANG00000029688 #33	RPL3L (ENSPANG00000011106) #34	NDUFB10 (ENSPANG00000008274) #35	RPS2 (ENSPANG00000021004)	RNF151 (ENSPANG00000019234)
Cercopithecinae_d	ANCESTRAL SPECIES	65	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.b.a	ENSGT00530000063647.A.a
Sooty mangabey	MODERN SPECIES	104	UBE2I (ENSCATG00000038133) #8	BAIAP3 (ENSCATG00000044317)	TSR3 (ENSCATG00000002510) #9	GNPTG (ENSCATG00000040204) #10	UNKL (ENSCATG00000033183) #11	UQCC4 (ENSCATG00000017665) #12	PERCC1 (ENSCATG00000014112) #13	CCDC154 (ENSCATG00000039677) #14	CLCN7 (ENSCATG00000013101) #15	PTX4 (ENSCATG00000041551) #16	TELO2 (ENSCATG00000031718) #17	TMEM204 (ENSCATG00000041448) #19	IFT140 (ENSCATG00000035856) #18	CRAMP1 (ENSCATG00000039680) #20	JPT2 (ENSCATG00000039325) #21	MAPK8IP3 (ENSCATG00000037988) #22	NME3 (ENSCATG00000031446) #23	MRPS34 (ENSCATG00000017392) #24	EME2 (ENSCATG00000034726) #25	SPSB3 (ENSCATG00000014492) #26	NUBP2 (ENSCATG00000032660) #27	IGFALS (ENSCATG00000038603) #28	HAGH (ENSCATG00000031808) #29	FAHD1 (ENSCATG00000024626) #30	ENSCATG00000013960 #31	HS3ST6 (ENSCATG00000044878) #32	ENSCATG00000045189 #33	RPL3L (ENSCATG00000043808) #34	NDUFB10 (ENSCATG00000020227) #35	ENSCATG00000040770	RNF151 (ENSCATG00000029626)
Drill	MODERN SPECIES	1516	TPSD1 (ENSMLEG00000040956) #7	UBE2I (ENSMLEG00000037403) #8	BAIAP3 (ENSMLEG00000043092)	TSR3 (ENSMLEG00000030991) #9	GNPTG (ENSMLEG00000035838) #10	UNKL (ENSMLEG00000037946) #11	UQCC4 (ENSMLEG00000035865) #12	CCDC154 (ENSMLEG00000005828) #14	CLCN7 (ENSMLEG00000027830) #15	PTX4 (ENSMLEG00000042635) #16	TELO2 (ENSMLEG00000035497) #17	IFT140 (ENSMLEG00000035964) #18	TMEM204 (ENSMLEG00000040932) #19	CRAMP1 (ENSMLEG00000040080) #20	JPT2 (ENSMLEG00000030463) #21	MAPK8IP3 (ENSMLEG00000034940) #22	ENSMLEG00000038547 #23	MRPS34 (ENSMLEG00000028354) #24	EME2 (ENSMLEG00000044276) #25	SPSB3 (ENSMLEG00000032836) #26	NUBP2 (ENSMLEG00000028983) #27	IGFALS (ENSMLEG00000040910) #28	HAGH (ENSMLEG00000042252) #29	FAHD1 (ENSMLEG00000026819) #30	ENSMLEG00000035652 #31	HS3ST6 (ENSMLEG00000026210) #32	ENSMLEG00000043698 #33	RPL3L (ENSMLEG00000032414) #34	NDUFB10 (ENSMLEG00000021536) #35	ENSMLEG00000038670	ENSMLEG00000030812
Macaca	ANCESTRAL SPECIES	8	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Pig-tailed macaque	MODERN SPECIES	124	UBE2I (ENSMNEG00000041643) #8	BAIAP3 (ENSMNEG00000028463)	TSR3 (ENSMNEG00000038392) #9	GNPTG (ENSMNEG00000038413) #10	UNKL (ENSMNEG00000036131) #11	UQCC4 (ENSMNEG00000032053) #12	PERCC1 (ENSMNEG00000002629) #13	CCDC154 (ENSMNEG00000041464) #14	CLCN7 (ENSMNEG00000032889) #15	PTX4 (ENSMNEG00000003932) #16	TELO2 (ENSMNEG00000030153) #17	TMEM204 (ENSMNEG00000029407) #19	IFT140 (ENSMNEG00000001208) #18	CRAMP1 (ENSMNEG00000032283) #20	JPT2 (ENSMNEG00000034006) #21	MAPK8IP3 (ENSMNEG00000034470) #22	NME3 (ENSMNEG00000016858) #23	MRPS34 (ENSMNEG00000040928) #24	EME2 (ENSMNEG00000028998) #25	SPSB3 (ENSMNEG00000043847) #26	NUBP2 (ENSMNEG00000042575) #27	IGFALS (ENSMNEG00000032413) #28	HAGH (ENSMNEG00000044613) #29	FAHD1 (ENSMNEG00000042967) #30	ENSMNEG00000004327 #31	HS3ST6 (ENSMNEG00000040903) #32	ENSMNEG00000041015 #33	RPL3L (ENSMNEG00000029185) #34	NDUFB10 (ENSMNEG00000004959) #35	ENSMNEG00000031742	RNF151 (ENSMNEG00000029972)
Macaca_a	ANCESTRAL SPECIES	25	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.b.a.a.a.a.b.b.b.a	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Crab-eating macaque	MODERN SPECIES	12	BAIAP3 (ENSMFAG00000001912)	TSR3 (ENSMFAG00000031171) #9	GNPTG (ENSMFAG00000031980) #10	ENSMFAG00000064676 #11	ENSMFAG00000059912 #12	CLCN7 (ENSMFAG00000031886) #15	CCDC154 (ENSMFAG00000000761) #14	PTX4 (ENSMFAG00000031460) #16	ENSMFAG00000058884	TELO2 (ENSMFAG00000037116) #17	IFT140 (ENSMFAG00000038575) #18	TMEM204 (ENSMFAG00000032333) #19	CRAMP1 (ENSMFAG00000002985) #20	JPT2 (ENSMFAG00000033861) #21	ENSMFAG00000060156	MAPK8IP3 (ENSMFAG00000037276) #22	MRPS34 (ENSMFAG00000046146) #24	EME2 (ENSMFAG00000026250) #25	NUBP2 (ENSMFAG00000037059) #27	SPSB3 (ENSMFAG00000031888) #26	IGFALS (ENSMFAG00000042039) #28	HAGH (ENSMFAG00000004030) #29	FAHD1 (ENSMFAG00000037024) #30	ENSMFAG00000000726 #31	ENSMFAG00000054955	HS3ST6 (ENSMFAG00000054823) #32	RPL3L (ENSMFAG00000039775) #34	NDUFB10 (ENSMFAG00000000484) #35	ENSMFAG00000002939	RNF151 (ENSMFAG00000035160)	TBL3 (ENSMFAG00000030302) #37
Rhesus	MODERN SPECIES	12	UBE2I (ENSMMUG00000044277) #8	TSR3 (ENSMMUG00000006428) #9	GNPTG (ENSMMUG00000012439) #10	UNKL (ENSMMUG00000012440) #11	ENSMMUG00000061546	CLCN7 (ENSMMUG00000021518) #15	CCDC154 (ENSMMUG00000021102) #14	PTX4 (ENSMMUG00000062229) #16	ENSMMUG00000050070	TELO2 (ENSMMUG00000008119) #17	IFT140 (ENSMMUG00000000044) #18	TMEM204 (ENSMMUG00000062198) #19	CRAMP1 (ENSMMUG00000000978) #20	ENSMMUG00000059063	JPT2 (ENSMMUG00000000979) #21	MAPK8IP3 (ENSMMUG00000017496) #22	NME3 (ENSMMUG00000003857) #23	MRPS34 (ENSMMUG00000018594) #24	EME2 (ENSMMUG00000060835) #25	SPSB3 (ENSMMUG00000060350) #26	NUBP2 (ENSMMUG00000018597) #27	IGFALS (ENSMMUG00000018598) #28	HAGH (ENSMMUG00000000737) #29	FAHD1 (ENSMMUG00000000738) #30	MEIOB (ENSMMUG00000000739) #31	ENSMMUG00000055452	HS3ST6 (ENSMMUG00000063633) #32	MSRB1 (ENSMMUG00000007936) #33	RPL3L (ENSMMUG00000007937) #34	NDUFB10 (ENSMMUG00000057370) #35	RPS2 (ENSMMUG00000029267)
Vervet Monkey	MODERN SPECIES	24	ENSCSAG00000011780	UBE2I (ENSCSAG00000011775) #8	BAIAP3 (ENSCSAG00000011761)	TSR3 (ENSCSAG00000011742) #9	GNPTG (ENSCSAG00000011737) #10	UNKL (ENSCSAG00000011709) #11	UQCC4 (ENSCSAG00000011651) #12	CCDC154 (ENSCSAG00000011633) #14	CLCN7 (ENSCSAG00000011607) #15	PTX4 (ENSCSAG00000011586) #16	TELO2 (ENSCSAG00000011579) #17	IFT140 (ENSCSAG00000011558) #18	TMEM204 (ENSCSAG00000011531) #19	CRAMP1 (ENSCSAG00000011519) #20	JPT2 (ENSCSAG00000011502) #21	MAPK8IP3 (ENSCSAG00000011484) #22	NME3 (ENSCSAG00000011458) #23	MRPS34 (ENSCSAG00000011443) #24	EME2 (ENSCSAG00000011426) #25	SPSB3 (ENSCSAG00000011396) #26	NUBP2 (ENSCSAG00000011369) #27	IGFALS (ENSCSAG00000011362) #28	HAGH (ENSCSAG00000011337) #29	FAHD1 (ENSCSAG00000018842) #30	ENSCSAG00000011268 #31	HS3ST6 (ENSCSAG00000011240) #32	RPL3L (ENSCSAG00000011232) #34	NDUFB10 (ENSCSAG00000011226) #35	RPS2 (ENSCSAG00000011216)	RNF151 (ENSCSAG00000011197)	TBL3 (ENSCSAG00000011191) #37
Rhinopithecus	ANCESTRAL SPECIES	14	ENSGT00940000165532 #7	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Black snub-nosed monkey	MODERN SPECIES	1929	ENSRBIG00000044236	UBE2I (ENSRBIG00000013186) #8	BAIAP3 (ENSRBIG00000031600)	TSR3 (ENSRBIG00000043958) #9	GNPTG (ENSRBIG00000034109) #10	UNKL (ENSRBIG00000040235) #11	UQCC4 (ENSRBIG00000038097) #12	CCDC154 (ENSRBIG00000040319) #14	CLCN7 (ENSRBIG00000039539) #15	PTX4 (ENSRBIG00000027792) #16	TELO2 (ENSRBIG00000038822) #17	IFT140 (ENSRBIG00000040322) #18	TMEM204 (ENSRBIG00000033674) #19	CRAMP1 (ENSRBIG00000031863) #20	JPT2 (ENSRBIG00000041459) #21	MAPK8IP3 (ENSRBIG00000044410) #22	NME3 (ENSRBIG00000031631) #23	MRPS34 (ENSRBIG00000030707) #24	EME2 (ENSRBIG00000032429) #25	SPSB3 (ENSRBIG00000039428) #26	NUBP2 (ENSRBIG00000031416) #27	IGFALS (ENSRBIG00000037270) #28	HAGH (ENSRBIG00000034228) #29	ENSRBIG00000030178 #31	HS3ST6 (ENSRBIG00000044265) #32	ENSRBIG00000044576 #33	RPL3L (ENSRBIG00000028920) #34	NDUFB10 (ENSRBIG00000044605) #35	RPS2 (ENSRBIG00000036242)	RNF151 (ENSRBIG00000030571)	TBL3 (ENSRBIG00000032982) #37
Golden snub-nosed monkey	MODERN SPECIES	2643	TPSD1 (ENSRROG00000043542) #7	UBE2I (ENSRROG00000044039) #8	BAIAP3 (ENSRROG00000031004)	TSR3 (ENSRROG00000042532) #9	GNPTG (ENSRROG00000035086) #10	UNKL (ENSRROG00000029341) #11	UQCC4 (ENSRROG00000041801) #12	CCDC154 (ENSRROG00000044225) #14	CLCN7 (ENSRROG00000041929) #15	PTX4 (ENSRROG00000043040) #16	TELO2 (ENSRROG00000028637) #17	IFT140 (ENSRROG00000015287) #18	TMEM204 (ENSRROG00000043665) #19	CRAMP1 (ENSRROG00000043453) #20	JPT2 (ENSRROG00000025417) #21	MAPK8IP3 (ENSRROG00000045499) #22	ENSRROG00000035949 #23	MRPS34 (ENSRROG00000028689) #24	EME2 (ENSRROG00000043980) #25	SPSB3 (ENSRROG00000044609) #26	NUBP2 (ENSRROG00000045209) #27	IGFALS (ENSRROG00000042451) #28	HAGH (ENSRROG00000032851) #29	FAHD1 (ENSRROG00000033003) #30	ENSRROG00000023184 #31	HS3ST6 (ENSRROG00000045261) #32	MSRB1 (ENSRROG00000017890) #33	RPL3L (ENSRROG00000033620) #34	NDUFB10 (ENSRROG00000005315) #35	RPS2 (ENSRROG00000035267)	RNF151 (ENSRROG00000035586)
Platyrrhini	ANCESTRAL SPECIES	32	ENSGT00550000075088.a.a.j.b.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000162015	ENSGT00940000160374	ENSGT00940000155267.c	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a
Cebidae	ANCESTRAL SPECIES	16	ENSGT00550000075088.a.a.j.b.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000162015	ENSGT00940000160374	ENSGT00940000155267.c	ENSGT00390000012605	ENSGT00550000074873.d	ENSGT00410000025739.c.a
Cebidae_a	ANCESTRAL SPECIES	15	ENSGT00940000158868	ENSGT00550000075088.a.a.j.b.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000162015	ENSGT00940000160374	ENSGT00940000155267.c	ENSGT00390000012605	ENSGT00550000074873.d	ENSGT00410000025739.c.a
Bolivian squirrel monkey	MODERN SPECIES	71	ENSSBOG00000009155	ENSSBOG00000028070 #8	BAIAP3 (ENSSBOG00000018805)	TSR3 (ENSSBOG00000020595) #9	GNPTG (ENSSBOG00000023025) #10	UNKL (ENSSBOG00000031173) #11	UQCC4 (ENSSBOG00000018977) #12	CCDC154 (ENSSBOG00000033270) #14	CLCN7 (ENSSBOG00000021371) #15	PTX4 (ENSSBOG00000024401) #16	TELO2 (ENSSBOG00000031314) #17	IFT140 (ENSSBOG00000021449) #18	TMEM204 (ENSSBOG00000023717) #19	CRAMP1 (ENSSBOG00000032950) #20	JPT2 (ENSSBOG00000021481) #21	MAPK8IP3 (ENSSBOG00000032195) #22	NME3 (ENSSBOG00000035930) #23	MRPS34 (ENSSBOG00000022248) #24	EME2 (ENSSBOG00000031994) #25	SPSB3 (ENSSBOG00000031939) #26	NUBP2 (ENSSBOG00000000048) #27	IGFALS (ENSSBOG00000033879) #28	HAGH (ENSSBOG00000027026) #29	FAHD1 (ENSSBOG00000033711) #30	ENSSBOG00000012975 #31	PRSS27 (ENSSBOG00000026534)	KCTD5 (ENSSBOG00000032146)	PDPK1 (ENSSBOG00000024665)	AMDHD2 (ENSSBOG00000022867)	ENSSBOG00000035802	TBC1D24 (ENSSBOG00000029183)
Capuchin	MODERN SPECIES	444	ENSCCAG00000036726	ENSCCAG00000009138 #8	BAIAP3 (ENSCCAG00000014999)	TSR3 (ENSCCAG00000034922) #9	GNPTG (ENSCCAG00000033363) #10	UNKL (ENSCCAG00000022808) #11	C16orf91 (ENSCCAG00000036104) #12	CCDC154 (ENSCCAG00000036580) #14	CLCN7 (ENSCCAG00000020383) #15	PTX4 (ENSCCAG00000014809) #16	TELO2 (ENSCCAG00000023349) #17	IFT140 (ENSCCAG00000019829) #18	TMEM204 (ENSCCAG00000022468) #19	CRAMP1 (ENSCCAG00000022072) #20	JPT2 (ENSCCAG00000025880) #21	MAPK8IP3 (ENSCCAG00000026687) #22	NME3 (ENSCCAG00000035080) #23	MRPS34 (ENSCCAG00000021752) #24	EME2 (ENSCCAG00000027956) #25	SPSB3 (ENSCCAG00000028227) #26	NUBP2 (ENSCCAG00000024752) #27	IGFALS (ENSCCAG00000024463) #28	HAGH (ENSCCAG00000024223) #29	FAHD1 (ENSCCAG00000027433) #30	MEIOB (ENSCCAG00000025134) #31	PRSS27 (ENSCCAG00000033088)	KCTD5 (ENSCCAG00000029747)	PDPK1 (ENSCCAG00000037062)	ENSCCAG00000025791	AMDHD2 (ENSCCAG00000025467)	ATP6V0C (ENSCCAG00000035848)
Marmoset	MODERN SPECIES	3	UBE2I (ENSCJAG00000043035) #8	BAIAP3 (ENSCJAG00000013194)	TSR3 (ENSCJAG00000013185) #9	GNPTG (ENSCJAG00000013166) #10	UNKL (ENSCJAG00000013151) #11	UQCC4 (ENSCJAG00000014406) #12	PERCC1 (ENSCJAG00000038190) #13	CCDC154 (ENSCJAG00000014379) #14	CLCN7 (ENSCJAG00000014423) #15	PTX4 (ENSCJAG00000014497) #16	TELO2 (ENSCJAG00000014499) #17	IFT140 (ENSCJAG00000014532) #18	TMEM204 (ENSCJAG00000014588) #19	CRAMP1 (ENSCJAG00000014596) #20	ENSCJAG00000014626 #21	MAPK8IP3 (ENSCJAG00000053951) #22	NME3 (ENSCJAG00000014687) #23	MRPS34 (ENSCJAG00000014694) #24	HAGH (ENSCJAG00000014745) #29	FAHD1 (ENSCJAG00000014764) #30	ENSCJAG00000014767 #31	PRSS27 (ENSCJAG00000074570)	KCTD5 (ENSCJAG00000042757)	PDPK1 (ENSCJAG00000014801)	AMDHD2 (ENSCJAG00000014876)	ATP6V0C (ENSCJAG00000045810)	TBC1D24 (ENSCJAG00000014910)	NTN3 (ENSCJAG00000014914)	TEDC2 (ENSCJAG00000084462)	CCNF (ENSCJAG00000014784)	ABCA3 (ENSCJAG00000014934)
Mas night monkey	MODERN SPECIES	1162	BAIAP3 (ENSANAG00000026454)	TSR3 (ENSANAG00000023143) #9	GNPTG (ENSANAG00000021857) #10	UNKL (ENSANAG00000021942) #11	UQCC4 (ENSANAG00000021620) #12	CCDC154 (ENSANAG00000020546) #14	CLCN7 (ENSANAG00000037591) #15	PTX4 (ENSANAG00000035628) #16	TELO2 (ENSANAG00000035480) #17	TMEM204 (ENSANAG00000034748) #19	IFT140 (ENSANAG00000033226) #18	CRAMP1 (ENSANAG00000027271) #20	JPT2 (ENSANAG00000026079) #21	NME3 (ENSANAG00000023706) #23	MRPS34 (ENSANAG00000021904) #24	MAPK8IP3 (ENSANAG00000035325) #22	SPSB3 (ENSANAG00000028700) #26	NUBP2 (ENSANAG00000026789) #27	IGFALS (ENSANAG00000026151) #28	ENSANAG00000019351 #30	HAGH (ENSANAG00000020735) #29	ENSANAG00000034768 #30	ENSANAG00000033819 #31	PRSS27 (ENSANAG00000032865)	KCTD5 (ENSANAG00000031560)	ENSANAG00000020510	AMDHD2 (ENSANAG00000031967)	ENSANAG00000030338	TBC1D24 (ENSANAG00000028671)	NTN3 (ENSANAG00000028509)	TEDC2 (ENSANAG00000027439)
Tarsier	MODERN SPECIES	6596	ENSTSYG00000034985	UBE2I (ENSTSYG00000028221) #8	BAIAP3 (ENSTSYG00000029544)	TSR3 (ENSTSYG00000026081) #9	ENSTSYG00000026873	UNKL (ENSTSYG00000033619) #11	CUNH16orf91 (ENSTSYG00000030140) #12	CCDC154 (ENSTSYG00000036155) #14	CLCN7 (ENSTSYG00000033315) #15	PTX4 (ENSTSYG00000033919) #16	TELO2 (ENSTSYG00000014612) #17	IFT140 (ENSTSYG00000006588) #18	TMEM204 (ENSTSYG00000006646) #19	CRAMP1 (ENSTSYG00000002901) #20	JPT2 (ENSTSYG00000002923) #21	MAPK8IP3 (ENSTSYG00000025647) #22	MRPS34 (ENSTSYG00000031660) #24	EME2 (ENSTSYG00000030413) #25	SPSB3 (ENSTSYG00000033584) #26	NUBP2 (ENSTSYG00000033549) #27	IGFALS (ENSTSYG00000034727) #28	HAGH (ENSTSYG00000006985) #29	FAHD1 (ENSTSYG00000007002) #30	ENSTSYG00000007030 #31	HS3ST6 (ENSTSYG00000026580) #32	MSRB1 (ENSTSYG00000031778) #33
Strepsirrhini	ANCESTRAL SPECIES	24	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Lemuriformes	ANCESTRAL SPECIES	27	ENSGT00550000075088.a.a.k.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Lemuriformes_a	ANCESTRAL SPECIES	23	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000169717	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652.i #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00530000063647.A.a
Coquerels sifaka	MODERN SPECIES	384	BAIAP3 (ENSPCOG00000021367)	TSR3 (ENSPCOG00000027967) #9	GNPTG (ENSPCOG00000015436) #10	ENSPCOG00000005384	UNKL (ENSPCOG00000017889) #11	UQCC4 (ENSPCOG00000017870) #12	PERCC1 (ENSPCOG00000019562) #13	CCDC154 (ENSPCOG00000027402) #14	CLCN7 (ENSPCOG00000023505) #15	PTX4 (ENSPCOG00000025173) #16	TELO2 (ENSPCOG00000022795) #17	IFT140 (ENSPCOG00000023133) #18	TMEM204 (ENSPCOG00000027514) #19	CRAMP1 (ENSPCOG00000004847) #20	ENSPCOG00000028105 #21	MAPK8IP3 (ENSPCOG00000021523) #22	NME3 (ENSPCOG00000019193) #23	MRPS34 (ENSPCOG00000026798) #24	EME2 (ENSPCOG00000021099) #25	SPSB3 (ENSPCOG00000015385) #26	NUBP2 (ENSPCOG00000018600) #27	IGFALS (ENSPCOG00000012687) #28	HAGH (ENSPCOG00000026794) #29	FAHD1 (ENSPCOG00000007621) #30	ENSPCOG00000002540 #31	HS3ST6 (ENSPCOG00000027953) #32	MSRB1 (ENSPCOG00000027095) #33	RPL3L (ENSPCOG00000014695) #34	NDUFB10 (ENSPCOG00000022126) #35	ENSPCOG00000028664	RNF151 (ENSPCOG00000015191)
Greater bamboo lemur	MODERN SPECIES	390	ENSPSMG00000024893	UBE2I (ENSPSMG00000024884) #8	ENSPSMG00000024876	TSR3 (ENSPSMG00000024865) #9	ENSPSMG00000024860	UNKL (ENSPSMG00000024857) #11	UQCC4 (ENSPSMG00000024850) #12	CCDC154 (ENSPSMG00000024847) #14	CLCN7 (ENSPSMG00000024837) #15	PTX4 (ENSPSMG00000024796) #16	TELO2 (ENSPSMG00000024784) #17	TMEM204 (ENSPSMG00000024736) #19	IFT140 (ENSPSMG00000024730) #18	CRAMP1 (ENSPSMG00000024711) #20	JPT2 (ENSPSMG00000024685) #21	MAPK8IP3 (ENSPSMG00000024595) #22	NME3 (ENSPSMG00000024387) #23	MRPS34 (ENSPSMG00000024379) #24	EME2 (ENSPSMG00000024369) #25	SPSB3 (ENSPSMG00000024361) #26	NUBP2 (ENSPSMG00000024328) #27	IGFALS (ENSPSMG00000024321) #28	ENSPSMG00000024318	HAGH (ENSPSMG00000024311) #29	FAHD1 (ENSPSMG00000024285) #30	ENSPSMG00000024276 #31	ENSPSMG00000024257	HS3ST6 (ENSPSMG00000024249) #32	MSRB1 (ENSPSMG00000024244) #33	RPL3L (ENSPSMG00000024237) #34	NDUFB10 (ENSPSMG00000024222) #35
Mouse lemur	MODERN SPECIES	8	ENSMICG00000004987	UBE2I (ENSMICG00000030413) #8	BAIAP3 (ENSMICG00000031314)	TSR3 (ENSMICG00000045072) #9	GNPTG (ENSMICG00000047931) #10	UNKL (ENSMICG00000007141) #11	UQCC4 (ENSMICG00000047600) #12	CCDC154 (ENSMICG00000013192) #14	CLCN7 (ENSMICG00000013205) #15	PTX4 (ENSMICG00000000217) #16	TELO2 (ENSMICG00000000220) #17	IFT140 (ENSMICG00000014051) #18	TMEM204 (ENSMICG00000042845) #19	CRAMP1 (ENSMICG00000014094) #20	JPT2 (ENSMICG00000026714) #21	MAPK8IP3 (ENSMICG00000002091) #22	NME3 (ENSMICG00000030545) #23	MRPS34 (ENSMICG00000031095) #24	SPSB3 (ENSMICG00000002122) #26	NUBP2 (ENSMICG00000002126) #27	IGFALS (ENSMICG00000002129) #28	HAGH (ENSMICG00000002132) #29	FAHD1 (ENSMICG00000002137) #30	ENSMICG00000011322 #31	ENSMICG00000037918	HS3ST6 (ENSMICG00000011342) #32	MSRB1 (ENSMICG00000011349) #33	RPL3L (ENSMICG00000012746) #34	NDUFB10 (ENSMICG00000027466) #35	ENSMICG00000012765	RNF151 (ENSMICG00000012775)
Bushbaby	MODERN SPECIES	159	ENSOGAG00000012923	ENSOGAG00000032629	UBE2I (ENSOGAG00000001428) #8	TSR3 (ENSOGAG00000001433) #9	GNPTG (ENSOGAG00000001435) #10	UNKL (ENSOGAG00000027777) #11	UQCC4 (ENSOGAG00000029437) #12	CCDC154 (ENSOGAG00000001438) #14	CLCN7 (ENSOGAG00000004362) #15	PTX4 (ENSOGAG00000032762) #16	TELO2 (ENSOGAG00000004371) #17	IFT140 (ENSOGAG00000001245) #18	JPT2 (ENSOGAG00000012638) #21	TMEM204 (ENSOGAG00000001249) #19	CRAMP1 (ENSOGAG00000001253) #20	MAPK8IP3 (ENSOGAG00000012639) #22	NME3 (ENSOGAG00000026071) #23	MRPS34 (ENSOGAG00000012647) #24	EME2 (ENSOGAG00000012649) #25	SPSB3 (ENSOGAG00000027372) #26	NUBP2 (ENSOGAG00000012655) #27	IGFALS (ENSOGAG00000012659) #28	HAGH (ENSOGAG00000012660) #29	FAHD1 (ENSOGAG00000012662) #30	HS3ST6 (ENSOGAG00000010083) #32	RPL3L (ENSOGAG00000010087) #34	NDUFB10 (ENSOGAG00000010094) #35	RPS2 (ENSOGAG00000010098)	TBL3 (ENSOGAG00000010104) #37	NOXO1 (ENSOGAG00000010110)	GFER (ENSOGAG00000016907)
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Tree shrew	MODERN SPECIES	5307																ENSTBEG00000002064 #22	JPT2 (ENSTBEG00000004148) #21
Glires	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Rodentia	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Rodentia_B	ANCESTRAL SPECIES	15	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	333	ENSDORG00000014822	Prss29 (ENSDORG00000029349)	Ube2i (ENSDORG00000023979) #8	Baiap3 (ENSDORG00000008452)	ENSDORG00000008458 #9	Gnptg (ENSDORG00000015662) #10	Unkl (ENSDORG00000015663) #11	Ccdc154 (ENSDORG00000009310) #14	Clcn7 (ENSDORG00000009312) #15	Ptx4 (ENSDORG00000000363) #16	Telo2 (ENSDORG00000004164) #17	Tmem204 (ENSDORG00000028876) #19	Ift140 (ENSDORG00000004166) #18	Cramp1 (ENSDORG00000013715) #20	Jpt2 (ENSDORG00000025742) #21	ENSDORG00000026402 #22	ENSDORG00000009659 #22	ENSDORG00000027160 #25	Spsb3 (ENSDORG00000009668) #26	Nubp2 (ENSDORG00000009670) #27	Igfals (ENSDORG00000009672) #28	Hagh (ENSDORG00000009673) #29	Meiob (ENSDORG00000012742) #31	Hs3st6 (ENSDORG00000023206) #32	Msrb1 (ENSDORG00000025189) #33	Rpl3l (ENSDORG00000007373) #34	Ndufb10 (ENSDORG00000007374) #35	ENSDORG00000007375	ENSDORG00000007376	Tbl3 (ENSDORG00000007377) #37	Noxo1 (ENSDORG00000007379)
Kangaroo rat	MODERN SPECIES	333	Prss29 (ENSDORG00000029349)	Ube2i (ENSDORG00000023979) #8	Baiap3 (ENSDORG00000008452)	ENSDORG00000008458 #9	Gnptg (ENSDORG00000015662) #10	Unkl (ENSDORG00000015663) #11	Ccdc154 (ENSDORG00000009310) #14	Clcn7 (ENSDORG00000009312) #15	Ptx4 (ENSDORG00000000363) #16	Telo2 (ENSDORG00000004164) #17	Tmem204 (ENSDORG00000028876) #19	Ift140 (ENSDORG00000004166) #18	Cramp1 (ENSDORG00000013715) #20	Jpt2 (ENSDORG00000025742) #21	ENSDORG00000026402 #22	ENSDORG00000009659 #22	ENSDORG00000027160 #25	Spsb3 (ENSDORG00000009668) #26	Nubp2 (ENSDORG00000009670) #27	Igfals (ENSDORG00000009672) #28	Hagh (ENSDORG00000009673) #29	Meiob (ENSDORG00000012742) #31	Hs3st6 (ENSDORG00000023206) #32	Msrb1 (ENSDORG00000025189) #33	Rpl3l (ENSDORG00000007373) #34	Ndufb10 (ENSDORG00000007374) #35	ENSDORG00000007375	ENSDORG00000007376	Tbl3 (ENSDORG00000007377) #37	Noxo1 (ENSDORG00000007379)	Gfer (ENSDORG00000025553)
Myomorpha	ANCESTRAL SPECIES	17	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Muroidea	ANCESTRAL SPECIES	10	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b.b	ENSGT00530000063647.A.a
Cricetidae	ANCESTRAL SPECIES		ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b.b	ENSGT00530000063647.A.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.b	ENSGT00530000063647.A.a
Chinese hamster chok1gshd	MODERN SPECIES	229	ENSCGRG00001021777 #8	Baiap3 (ENSCGRG00001011930)	Tsr3 (ENSCGRG00001021799) #9	Gnptg (ENSCGRG00001018591) #10	Unkl (ENSCGRG00001014153) #11	Uqcc4 (ENSCGRG00001011218) #12	ENSCGRG00001008639	Ccdc154 (ENSCGRG00001021301) #14	Clcn7 (ENSCGRG00001022791) #15	Ptx4 (ENSCGRG00001018707) #16	Telo2 (ENSCGRG00001024725) #17	Tmem204 (ENSCGRG00001023413) #19	Ift140 (ENSCGRG00001020155) #18	Cramp1 (ENSCGRG00001024738) #20	Jpt2 (ENSCGRG00001023398) #21	Mapk8ip3 (ENSCGRG00001009625) #22	Nme3 (ENSCGRG00001024438) #23	Mrps34 (ENSCGRG00001023318) #24	Eme2 (ENSCGRG00001014405) #25	Spsb3 (ENSCGRG00001017880) #26	Nubp2 (ENSCGRG00001024233) #27	Igfals (ENSCGRG00001023230) #28	Hagh (ENSCGRG00001014522) #29	Fahd1 (ENSCGRG00001013933) #30	Meiob (ENSCGRG00001024640) #31	Hs3st6 (ENSCGRG00001024254) #32	Msrb1 (ENSCGRG00001023043) #33	Rpl3l (ENSCGRG00001016900) #34	Ndufb10 (ENSCGRG00001013121) #35	Rps2 (ENSCGRG00001023670)	Rnf151 (ENSCGRG00001023396)
Golden Hamster	MODERN SPECIES	733	Ube2i (ENSMAUG00000019217) #8	Baiap3 (ENSMAUG00000009623)	Tsr3 (ENSMAUG00000019859) #9	Gnptg (ENSMAUG00000011816) #10	Unkl (ENSMAUG00000016281) #11	Uqcc4 (ENSMAUG00000002041) #12	Ccdc154 (ENSMAUG00000021304) #14	Clcn7 (ENSMAUG00000021954) #15	Ptx4 (ENSMAUG00000017221) #16	ENSMAUG00000022008 #18	Tmem204 (ENSMAUG00000008010) #19	ENSMAUG00000022190 #18	Cramp1 (ENSMAUG00000019364) #20	Jpt2 (ENSMAUG00000005592) #21	ENSMAUG00000007417	Mapk8ip3 (ENSMAUG00000010859) #22	Nme3 (ENSMAUG00000008485) #23	Mrps34 (ENSMAUG00000015906) #24	Eme2 (ENSMAUG00000008967) #25	Spsb3 (ENSMAUG00000011949) #26	Nubp2 (ENSMAUG00000006099) #27	Igfals (ENSMAUG00000021813) #28	Hagh (ENSMAUG00000012144) #29	Fahd1 (ENSMAUG00000008227) #30	Meiob (ENSMAUG00000021803) #31	Hs3st6 (ENSMAUG00000018680) #32	Msrb1 (ENSMAUG00000019299) #33	Rpl3l (ENSMAUG00000008094) #34	Ndufb10 (ENSMAUG00000007967) #35	Rnf151 (ENSMAUG00000004941)	Tbl3 (ENSMAUG00000008718) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b.b	ENSGT00530000063647.A.a
Northern American deer mouse	MODERN SPECIES	21	Baiap3 (ENSPEMG00000017470)	Tsr3 (ENSPEMG00000005763) #9	ENSPEMG00000031212	ENSPEMG00000028821	Unkl (ENSPEMG00000008937) #11	Uqcc4 (ENSPEMG00000025335) #12	Percc1 (ENSPEMG00000028044) #13	Ccdc154 (ENSPEMG00000006684) #14	Clcn7 (ENSPEMG00000016398) #15	Ptx4 (ENSPEMG00000012407) #16	Telo2 (ENSPEMG00000017007) #17	Ift140 (ENSPEMG00000014706) #18	Tmem204 (ENSPEMG00000027984) #19	Cramp1 (ENSPEMG00000007023) #20	Jpt2 (ENSPEMG00000017546) #21	Mapk8ip3 (ENSPEMG00000011936) #22	Nme3 (ENSPEMG00000018639) #23	Mrps34 (ENSPEMG00000005957) #24	Eme2 (ENSPEMG00000001093) #25	Spsb3 (ENSPEMG00000016895) #26	Nubp2 (ENSPEMG00000010441) #27	Igfals (ENSPEMG00000008578) #28	Hagh (ENSPEMG00000010566) #29	ENSPEMG00000013732 #30	ENSPEMG00000025128 #31	Slit3 (ENSPEMG00000018195)	Pank3 (ENSPEMG00000024678)	Fbll1 (ENSPEMG00000020325)	Rars (ENSPEMG00000020288)	Wwc1 (ENSPEMG00000011501)	Tenm2 (ENSPEMG00000018309)
Prairie vole	MODERN SPECIES	15	ENSMOCG00000003971 #8	Baiap3 (ENSMOCG00000013309)	Tsr3 (ENSMOCG00000020216) #9	Gnptg (ENSMOCG00000003323) #10	Unkl (ENSMOCG00000011424) #11	Uqcc4 (ENSMOCG00000014311) #12	Ccdc154 (ENSMOCG00000008134) #14	Clcn7 (ENSMOCG00000012551) #15	Ptx4 (ENSMOCG00000016016) #16	Telo2 (ENSMOCG00000022271) #17	ENSMOCG00000014894 #18	Tmem204 (ENSMOCG00000010004) #19	ENSMOCG00000011625 #18	Cramp1 (ENSMOCG00000015569) #20	Jpt2 (ENSMOCG00000022903) #21	Mapk8ip3 (ENSMOCG00000018334) #22	ENSMOCG00000003271 #23	Mrps34 (ENSMOCG00000004274) #24	Eme2 (ENSMOCG00000019621) #25	Spsb3 (ENSMOCG00000000734) #26	Nubp2 (ENSMOCG00000003091) #27	Igfals (ENSMOCG00000013702) #28	Hagh (ENSMOCG00000020674) #29	Fahd1 (ENSMOCG00000001032) #30	Meiob (ENSMOCG00000020796) #31	Hs3st6 (ENSMOCG00000022877) #32	Msrb1 (ENSMOCG00000013864) #33	Rpl3l (ENSMOCG00000020012) #34	Ndufb10 (ENSMOCG00000011750) #35	ENSMOCG00000014200	Rnf151 (ENSMOCG00000021816)
Murinae	ANCESTRAL SPECIES	7	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00940000153095.g.b.a.a.b.a.b.b
Mus	ANCESTRAL SPECIES	21	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652.r #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00390000014665.b #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652.r #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Mus_C	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665.b #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652.q.b #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
spretus	MODERN SPECIES	8	Tsr3 (MGP_SPRETEiJ_G0022139) #9	Gnptg (MGP_SPRETEiJ_G0022138) #10	MGP_SPRETEiJ_G0022137 #11	Unkl (MGP_SPRETEiJ_G0022136) #11	Uqcc4 (MGP_SPRETEiJ_G0022135) #12	Ccdc154 (MGP_SPRETEiJ_G0022134) #14	Clcn7 (MGP_SPRETEiJ_G0022133) #15	Ptx4 (MGP_SPRETEiJ_G0022132) #16	Telo2 (MGP_SPRETEiJ_G0022131) #17	Tmem204 (MGP_SPRETEiJ_G0022130) #19	Ift140 (MGP_SPRETEiJ_G0022129) #18	Cramp1 (MGP_SPRETEiJ_G0022128) #20	Jpt2 (MGP_SPRETEiJ_G0022127) #21	Nme3 (MGP_SPRETEiJ_G0022126) #23	Mrps34 (MGP_SPRETEiJ_G0022125) #24	Mapk8ip3 (MGP_SPRETEiJ_G0022124) #22	MGP_SPRETEiJ_G0022123	Spsb3 (MGP_SPRETEiJ_G0022122) #26	Nubp2 (MGP_SPRETEiJ_G0022121) #27	Igfals (MGP_SPRETEiJ_G0022120) #28	MGP_SPRETEiJ_G0022119 #36	Ndufb10 (MGP_SPRETEiJ_G0022118) #35	MGP_SPRETEiJ_G0022117 #34	Fahd1 (MGP_SPRETEiJ_G0022116) #30	Hagh (MGP_SPRETEiJ_G0022115) #29	Meiob (MGP_SPRETEiJ_G0022114) #31	Hs3st6 (MGP_SPRETEiJ_G0022113) #32	Msrb1 (MGP_SPRETEiJ_G0022112) #33	Rnf151 (MGP_SPRETEiJ_G0022111)	Tbl3 (MGP_SPRETEiJ_G0022110) #37	Noxo1 (MGP_SPRETEiJ_G0022109)
Steppe mouse	MODERN SPECIES	3126	Ube2i (ENSMSIG00000012009) #8	Baiap3 (ENSMSIG00000011451)	ENSMSIG00000011425 #9	Gnptg (ENSMSIG00000011397) #10	ENSMSIG00000011382	Unkl (ENSMSIG00000011290) #11	ENSMSIG00000011275 #12	Ccdc154 (ENSMSIG00000011172) #14	Clcn7 (ENSMSIG00000011010) #15	Ptx4 (ENSMSIG00000010971) #16	Telo2 (ENSMSIG00000010889) #17	Tmem204 (ENSMSIG00000010873) #19	Ift140 (ENSMSIG00000010724) #18	Cramp1 (ENSMSIG00000010664) #20	ENSMSIG00000010638 #21	Mapk8ip3 (ENSMSIG00000008777) #22	Nme3 (ENSMSIG00000008746) #23	Mrps34 (ENSMSIG00000008733) #24	Eme2 (ENSMSIG00000008685) #25	ENSMSIG00000008500 #26	Nubp2 (ENSMSIG00000008482) #27	Igfals (ENSMSIG00000008467) #28	Hagh (ENSMSIG00000008421) #29	Fahd1 (ENSMSIG00000008407) #30	Meiob (ENSMSIG00000008345) #31	Hs3st6 (ENSMSIG00000008324) #32	Msrb1 (ENSMSIG00000008280) #33	Rpl3l (ENSMSIG00000008247) #34	Ndufb10 (ENSMSIG00000008241) #35	Rps2 (ENSMSIG00000008161)	Rnf151 (ENSMSIG00000008128)
Mouse	MODERN SPECIES	8	Tsr3 (ENSMUSG00000015126) #9	Gnptg (ENSMUSG00000035521) #10	Unkl (ENSMUSG00000015127) #11	Uqcc4 (ENSMUSG00000067722) #12	Percc1 (ENSMUSG00000114245) #13	Ccdc154 (ENSMUSG00000059562) #14	Clcn7 (ENSMUSG00000036636) #15	Ptx4 (ENSMUSG00000044172) #16	Telo2 (ENSMUSG00000024170) #17	Tmem204 (ENSMUSG00000024168) #19	Ift140 (ENSMUSG00000024169) #18	Cramp1 (ENSMUSG00000038002) #20	Jpt2 (ENSMUSG00000024165) #21	Nme3 (ENSMUSG00000073435) #23	Mrps34 (ENSMUSG00000038880) #24	Mapk8ip3 (ENSMUSG00000024163) #22	Eme2 (ENSMUSG00000073436) #25	Spsb3 (ENSMUSG00000024160) #26	Nubp2 (ENSMUSG00000039183) #27	Igfals (ENSMUSG00000046070) #28	Fahd1 (ENSMUSG00000045316) #30	Hagh (ENSMUSG00000024158) #29	Meiob (ENSMUSG00000024155) #31	Hs3st6 (ENSMUSG00000039628) #32	Msrb1 (ENSMUSG00000075705) #33	Rpl3l (ENSMUSG00000002500) #34	Ndufb10 (ENSMUSG00000040048) #35	Rps2 (ENSMUSG00000044533)	Rnf151 (ENSMUSG00000008482)	Tbl3 (ENSMUSG00000040688) #37	Noxo1 (ENSMUSG00000019320)
Ryukyu mouse	MODERN SPECIES	8	Tsr3 (MGP_CAROLIEiJ_G0021228) #9	Gnptg (MGP_CAROLIEiJ_G0021227) #10	MGP_CAROLIEiJ_G0021226 #11	Unkl (MGP_CAROLIEiJ_G0021225) #11	Uqcc4 (MGP_CAROLIEiJ_G0021224) #12	Ccdc154 (MGP_CAROLIEiJ_G0021223) #14	Clcn7 (MGP_CAROLIEiJ_G0021222) #15	Ptx4 (MGP_CAROLIEiJ_G0021221) #16	Telo2 (MGP_CAROLIEiJ_G0021220) #17	Tmem204 (MGP_CAROLIEiJ_G0021219) #19	Ift140 (MGP_CAROLIEiJ_G0021218) #18	Cramp1 (MGP_CAROLIEiJ_G0021217) #20	MGP_CAROLIEiJ_G0021216 #21	Nme3 (MGP_CAROLIEiJ_G0021215) #23	Mrps34 (MGP_CAROLIEiJ_G0021214) #24	Mapk8ip3 (MGP_CAROLIEiJ_G0021213) #22	Eme2 (MGP_CAROLIEiJ_G0021212) #25	MGP_CAROLIEiJ_G0021211 #26	Nubp2 (MGP_CAROLIEiJ_G0021210) #27	Igfals (MGP_CAROLIEiJ_G0021209) #28	Fahd1 (MGP_CAROLIEiJ_G0021208) #30	Hagh (MGP_CAROLIEiJ_G0021207) #29	Meiob (MGP_CAROLIEiJ_G0021206) #31	Hs3st6 (MGP_CAROLIEiJ_G0021205) #32	Msrb1 (MGP_CAROLIEiJ_G0021204) #33	Rpl3l (MGP_CAROLIEiJ_G0021203) #34	Ndufb10 (MGP_CAROLIEiJ_G0021202) #35	MGP_CAROLIEiJ_G0021201	Rnf151 (MGP_CAROLIEiJ_G0021200)	Tbl3 (MGP_CAROLIEiJ_G0021199) #37	Noxo1 (MGP_CAROLIEiJ_G0021198)
Shrew mouse	MODERN SPECIES	13	Gnptg (MGP_PahariEiJ_G0023545) #10	MGP_PahariEiJ_G0023544 #11	Unkl (MGP_PahariEiJ_G0023543) #11	Uqcc4 (MGP_PahariEiJ_G0023542) #12	Ccdc154 (MGP_PahariEiJ_G0023541) #14	Clcn7 (MGP_PahariEiJ_G0023540) #15	Ptx4 (MGP_PahariEiJ_G0023539) #16	Telo2 (MGP_PahariEiJ_G0023538) #17	Tmem204 (MGP_PahariEiJ_G0023537) #19	Ift140 (MGP_PahariEiJ_G0023536) #18	Cramp1 (MGP_PahariEiJ_G0023535) #20	MGP_PahariEiJ_G0023534 #21	MGP_PahariEiJ_G0023533 #21	Nme3 (MGP_PahariEiJ_G0023532) #23	Mrps34 (MGP_PahariEiJ_G0023531) #24	Mapk8ip3 (MGP_PahariEiJ_G0023530) #22	Eme2 (MGP_PahariEiJ_G0023529) #25	MGP_PahariEiJ_G0023528 #26	Nubp2 (MGP_PahariEiJ_G0023527) #27	Igfals (MGP_PahariEiJ_G0023526) #28	Fahd1 (MGP_PahariEiJ_G0023525) #30	Hagh (MGP_PahariEiJ_G0023524) #29	Meiob (MGP_PahariEiJ_G0023523) #31	Hs3st6 (MGP_PahariEiJ_G0023522) #32	Msrb1 (MGP_PahariEiJ_G0023521) #33	Rpl3l (MGP_PahariEiJ_G0023520) #34	Ndufb10 (MGP_PahariEiJ_G0023519) #35	MGP_PahariEiJ_G0023518	Rnf151 (MGP_PahariEiJ_G0023517)	Tbl3 (MGP_PahariEiJ_G0023516) #37	Noxo1 (MGP_PahariEiJ_G0023515)
Rat	MODERN SPECIES	1	Baiap3 (ENSRNOG00000017893)	Tsr3 (ENSRNOG00000017858) #9	Gnptg (ENSRNOG00000024455) #10	Unkl (ENSRNOG00000054605) #11	Uqcc4 (ENSRNOG00000029415) #12	Snrpc-ps3 (ENSRNOG00000017586)	Percc1 (ENSRNOG00000065484) #13	Ccdc154 (ENSRNOG00000030541) #14	Clcn7 (ENSRNOG00000016976) #15	Ptx4 (ENSRNOG00000060934) #16	Telo2 (ENSRNOG00000016774) #17	Tmem204 (ENSRNOG00000016494) #19	Ift140 (ENSRNOG00000016545) #18	Cramp1 (ENSRNOG00000024635) #20	Jpt2 (ENSRNOG00000024661) #21	Mapk8ip3 (ENSRNOG00000033568) #22	Nme3 (ENSRNOG00000015749) #23	Mrps34 (ENSRNOG00000015479) #24	Eme2 (ENSRNOG00000024867) #25	Spsb3 (ENSRNOG00000015300) #26	Nubp2 (ENSRNOG00000015090) #27	Igfals (ENSRNOG00000015061) #28	Hagh (ENSRNOG00000014743) #29	Fahd1 (ENSRNOG00000014727) #30	Meiob (ENSRNOG00000014711) #31	Hs3st6 (ENSRNOG00000014672) #32	Msrb1 (ENSRNOG00000055314) #33	Rpl3l (ENSRNOG00000014641) #34	Ndufb10 (ENSRNOG00000014568) #35	Rps2 (ENSRNOG00000014179)	Rnf151 (ENSRNOG00000014127)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1760	Prss29 (ENSNGAG00000019360)	Prss34 (ENSNGAG00000013475)	ENSNGAG00000019007 #8	Baiap3 (ENSNGAG00000024206)	Tsr3 (ENSNGAG00000003886) #9	Gnptg (ENSNGAG00000010304) #10	Unkl (ENSNGAG00000002821) #11	Uqcc4 (ENSNGAG00000024109) #12	Clcn7 (ENSNGAG00000022952) #15	Telo2 (ENSNGAG00000020065) #17	ENSNGAG00000010476 #18	Tmem204 (ENSNGAG00000016981) #19	ENSNGAG00000019576 #18	Cramp1 (ENSNGAG00000012239) #20	Jpt2 (ENSNGAG00000021166) #21	Mapk8ip3 (ENSNGAG00000021573) #22	Nme3 (ENSNGAG00000022562) #23	Mrps34 (ENSNGAG00000023629) #24	Spsb3 (ENSNGAG00000023785) #26	Nubp2 (ENSNGAG00000001165) #27	Igfals (ENSNGAG00000014838) #28	Hagh (ENSNGAG00000024100) #29	Fahd1 (ENSNGAG00000013637) #30	Meiob (ENSNGAG00000006985) #31	Hs3st6 (ENSNGAG00000011421) #32	Msrb1 (ENSNGAG00000015847) #33	Rpl3l (ENSNGAG00000023163) #34	Ndufb10 (ENSNGAG00000015798) #35	ENSNGAG00000013739	Tbl3 (ENSNGAG00000002428) #37	Rnf151 (ENSNGAG00000003547)
Lesser Egyptian jerboa	MODERN SPECIES	47	Prss28 (ENSJJAG00000008115)	ENSJJAG00000019500 #8	Baiap3 (ENSJJAG00000014083)	Tsr3 (ENSJJAG00000017912) #9	Gnptg (ENSJJAG00000015582) #10	Unkl (ENSJJAG00000011047) #11	Uqcc4 (ENSJJAG00000004240) #12	Ccdc154 (ENSJJAG00000000910) #14	Clcn7 (ENSJJAG00000022469) #15	Ptx4 (ENSJJAG00000023455) #16	Telo2 (ENSJJAG00000019914) #17	Ift140 (ENSJJAG00000015483) #18	Tmem204 (ENSJJAG00000016676) #19	Cramp1 (ENSJJAG00000019556) #20	ENSJJAG00000022922 #21	Mapk8ip3 (ENSJJAG00000012043) #22	Nme3 (ENSJJAG00000014938) #23	Mrps34 (ENSJJAG00000016768) #24	Eme2 (ENSJJAG00000022042) #25	Spsb3 (ENSJJAG00000005206) #26	Nubp2 (ENSJJAG00000010092) #27	Igfals (ENSJJAG00000014391) #28	ENSJJAG00000018924 #29	Fahd1 (ENSJJAG00000012552) #30	Meiob (ENSJJAG00000020956) #31	Hs3st6 (ENSJJAG00000018711) #32	Msrb1 (ENSJJAG00000023868) #33	Rpl3l (ENSJJAG00000011979) #34	ENSJJAG00000011730 #35	ENSJJAG00000011197	Rnf151 (ENSJJAG00000006822)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.n #35	ENSGT00940000153095.g.b.a.b.h	ENSGT00390000006348.m #35
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.n #35	ENSGT00940000153095.g.b.a.b.h	ENSGT00530000063647.A.a
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.n #35	ENSGT00940000153095.g.b.a.b.h	ENSGT00530000063647.A.a
Long-tailed chinchilla	MODERN SPECIES	149	ENSCLAG00000015166	UBE2I (ENSCLAG00000015675) #8	BAIAP3 (ENSCLAG00000014438)	TSR3 (ENSCLAG00000013022) #9	GNPTG (ENSCLAG00000012982) #10	UNKL (ENSCLAG00000015420) #11	UQCC4 (ENSCLAG00000016079) #12	CCDC154 (ENSCLAG00000013674) #14	CLCN7 (ENSCLAG00000014385) #15	PTX4 (ENSCLAG00000015124) #16	TELO2 (ENSCLAG00000012862) #17	TMEM204 (ENSCLAG00000015782) #19	IFT140 (ENSCLAG00000013535) #18	CRAMP1 (ENSCLAG00000013881) #20	JPT2 (ENSCLAG00000014793) #21	MAPK8IP3 (ENSCLAG00000014643) #22	NME3 (ENSCLAG00000015018) #23	MRPS34 (ENSCLAG00000015224) #24	EME2 (ENSCLAG00000015876) #25	SPSB3 (ENSCLAG00000013801) #26	NUBP2 (ENSCLAG00000015595) #27	IGFALS (ENSCLAG00000014739) #28	HAGH (ENSCLAG00000013689) #29	ENSCLAG00000012822 #31	HS3ST6 (ENSCLAG00000011879) #32	MSRB1 (ENSCLAG00000016348) #33	RPL3L (ENSCLAG00000015614) #34	ENSCLAG00000016182	NDUFB10 (ENSCLAG00000013856) #35	ENSCLAG00000016080	RNF151 (ENSCLAG00000014779)
Degu	MODERN SPECIES	62	ENSODEG00000016190 #8	BAIAP3 (ENSODEG00000015393)	TSR3 (ENSODEG00000014546) #9	GNPTG (ENSODEG00000015470) #10	UNKL (ENSODEG00000017747) #11	UQCC4 (ENSODEG00000014612) #12	ENSODEG00000020180	CCDC154 (ENSODEG00000015378) #14	CLCN7 (ENSODEG00000014485) #15	PTX4 (ENSODEG00000014551) #16	TELO2 (ENSODEG00000014830) #17	TMEM204 (ENSODEG00000015065) #19	IFT140 (ENSODEG00000015652) #18	CRAMP1 (ENSODEG00000014456) #20	JPT2 (ENSODEG00000016076) #21	MAPK8IP3 (ENSODEG00000016004) #22	NME3 (ENSODEG00000015019) #23	MRPS34 (ENSODEG00000015453) #24	EME2 (ENSODEG00000015003) #25	SPSB3 (ENSODEG00000014798) #26	NUBP2 (ENSODEG00000014655) #27	IGFALS (ENSODEG00000014585) #28	HAGH (ENSODEG00000014503) #29	FAHD1 (ENSODEG00000020210) #30	ENSODEG00000013846 #31	ENSODEG00000020141	HS3ST6 (ENSODEG00000013773) #32	ENSODEG00000014218 #33	RPL3L (ENSODEG00000015166) #34	ENSODEG00000013906	RNF151 (ENSODEG00000014607)
Guinea pig	MODERN SPECIES	4	ENSCPOG00000014280	UBE2I (ENSCPOG00000035983) #8	BAIAP3 (ENSCPOG00000010436)	TSR3 (ENSCPOG00000010452) #9	GNPTG (ENSCPOG00000014046) #10	UNKL (ENSCPOG00000011846) #11	UQCC4 (ENSCPOG00000031653) #12	CCDC154 (ENSCPOG00000012968) #14	CLCN7 (ENSCPOG00000012975) #15	PTX4 (ENSCPOG00000007357) #16	TELO2 (ENSCPOG00000003304) #17	IFT140 (ENSCPOG00000003314) #18	TMEM204 (ENSCPOG00000030328) #19	CRAMP1 (ENSCPOG00000005336) #20	JPT2 (ENSCPOG00000032923) #21	MAPK8IP3 (ENSCPOG00000005354) #22	NME3 (ENSCPOG00000035161) #23	MRPS34 (ENSCPOG00000005379) #24	EME2 (ENSCPOG00000032066) #25	SPSB3 (ENSCPOG00000026170) #26	NUBP2 (ENSCPOG00000008071) #27	IGFALS (ENSCPOG00000033322) #28	HAGH (ENSCPOG00000024438) #29	ENSCPOG00000001543 #31	HS3ST6 (ENSCPOG00000014346) #32	MSRB1 (ENSCPOG00000011627) #33	RPL3L (ENSCPOG00000011631) #34	NDUFB10 (ENSCPOG00000038375) #35	ENSCPOG00000011651	RNF151 (ENSCPOG00000011654)	TBL3 (ENSCPOG00000005998) #37
Naked mole-rat female	MODERN SPECIES	15	CDC45 (ENSHGLG00000015159)	ENSHGLG00000014850	C22orf39 (ENSHGLG00000035091)	MRPL40 (ENSHGLG00000039126)	ENSHGLG00000010841	ENSHGLG00000013734	ENSHGLG00000009422	ENSHGLG00000047283	ENSHGLG00000037724	ENSHGLG00000002228 #16	ENSHGLG00000047108 #17	IFT140 (ENSHGLG00000002078) #18	TMEM204 (ENSHGLG00000032434) #19	CRAMP1 (ENSHGLG00000001969) #20	JPT2 (ENSHGLG00000046712) #21	MAPK8IP3 (ENSHGLG00000001589) #22	NME3 (ENSHGLG00000001237) #23	MRPS34 (ENSHGLG00000001213) #24	EME2 (ENSHGLG00000038718) #25	SPSB3 (ENSHGLG00000001146) #26	NUBP2 (ENSHGLG00000004842) #27	IGFALS (ENSHGLG00000004496) #28	HAGH (ENSHGLG00000003923) #29	FAHD1 (ENSHGLG00000041252) #30	ENSHGLG00000003597 #31	HS3ST6 (ENSHGLG00000039701) #32	RPL3L (ENSHGLG00000003329) #34	ENSHGLG00000003234 #35	ENSHGLG00000002542	ENSHGLG00000002492	TBL3 (ENSHGLG00000002431) #37
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Marmotini	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a.m.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00550000075088.a.a.m.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Squirrel	MODERN SPECIES	294	Ube2i (ENSSTOG00000010233) #8	BAIAP3 (ENSSTOG00000015767)	TSR3 (ENSSTOG00000015781) #9	GNPTG (ENSSTOG00000019834) #10	UNKL (ENSSTOG00000003487) #11	UQCC4 (ENSSTOG00000003515) #12	CCDC154 (ENSSTOG00000003540) #14	CLCN7 (ENSSTOG00000023676) #15	PTX4 (ENSSTOG00000003603) #16	TELO2 (ENSSTOG00000003610) #17	TMEM204 (ENSSTOG00000021652) #19	IFT140 (ENSSTOG00000003636) #18	CRAMP1 (ENSSTOG00000003675) #20	ENSSTOG00000025346	JPT2 (ENSSTOG00000003729) #21	MAPK8IP3 (ENSSTOG00000003734) #22	NME3 (ENSSTOG00000028986) #23	MRPS34 (ENSSTOG00000021586) #24	EME2 (ENSSTOG00000000961) #25	SPSB3 (ENSSTOG00000021171) #26	NUBP2 (ENSSTOG00000026670) #27	IGFALS (ENSSTOG00000027057) #28	HAGH (ENSSTOG00000009109) #29	ENSSTOG00000020433 #31	HS3ST6 (ENSSTOG00000012919) #32	MSRB1 (ENSSTOG00000034478) #33	RPL3L (ENSSTOG00000012921) #34	NDUFB10 (ENSSTOG00000012938) #35	ENSSTOG00000012944	ENSSTOG00000023350	TBL3 (ENSSTOG00000012964) #37
Arctic ground squirrel	MODERN SPECIES	37	ENSUPAG00010014457 #8	ENSUPAG00010014489	TSR3 (ENSUPAG00010014534) #9	GNPTG (ENSUPAG00010014541) #10	UNKL (ENSUPAG00010014554) #11	UQCC4 (ENSUPAG00010014604) #12	PERCC1 (ENSUPAG00010014611) #13	CCDC154 (ENSUPAG00010014614) #14	CLCN7 (ENSUPAG00010014777) #15	ENSUPAG00010014893	TELO2 (ENSUPAG00010014896) #17	IFT140 (ENSUPAG00010014979) #18	TMEM204 (ENSUPAG00010015069) #19	CRAMP1 (ENSUPAG00010015084) #20	JPT2 (ENSUPAG00010015162) #21	MAPK8IP3 (ENSUPAG00010015185) #22	NME3 (ENSUPAG00010016324) #23	ENSUPAG00010016348 #24	EME2 (ENSUPAG00010016365) #25	SPSB3 (ENSUPAG00010016383) #26	NUBP2 (ENSUPAG00010016409) #27	ENSUPAG00010016447 #28	HAGH (ENSUPAG00010016451) #29	FAHD1 (ENSUPAG00010016476) #30	ENSUPAG00010016481 #31	HS3ST6 (ENSUPAG00010016522) #32	MSRB1 (ENSUPAG00010016532) #33	RPL3L (ENSUPAG00010016544) #34	NDUFB10 (ENSUPAG00010016562) #35	RPS2 (ENSUPAG00010016573)	RNF151 (ENSUPAG00010016927)
Alpin marmot	MODERN SPECIES	28	ENSMMMG00000015935 #8	ENSMMMG00000015930	ENSMMMG00000015922	TSR3 (ENSMMMG00000015912) #9	UNKL (ENSMMMG00000015853) #11	UQCC4 (ENSMMMG00000015846) #12	PERCC1 (ENSMMMG00000015837) #13	CCDC154 (ENSMMMG00000015727) #14	CLCN7 (ENSMMMG00000015689) #15	PTX4 (ENSMMMG00000015680) #16	TELO2 (ENSMMMG00000015629) #17	TMEM204 (ENSMMMG00000015619) #19	IFT140 (ENSMMMG00000015580) #18	CRAMP1 (ENSMMMG00000015511) #20	JPT2 (ENSMMMG00000015507) #21	MAPK8IP3 (ENSMMMG00000011208) #22	MRPS34 (ENSMMMG00000011168) #24	EME2 (ENSMMMG00000011151) #25	SPSB3 (ENSMMMG00000011143) #26	NUBP2 (ENSMMMG00000011128) #27	IGFALS (ENSMMMG00000011124) #28	HAGH (ENSMMMG00000011110) #29	FAHD1 (ENSMMMG00000011106) #30	ENSMMMG00000011082 #31	HS3ST6 (ENSMMMG00000011071) #32	MSRB1 (ENSMMMG00000011047) #33	RPL3L (ENSMMMG00000011010) #34	NDUFB10 (ENSMMMG00000010988) #35	RPS2 (ENSMMMG00000010948)	RNF151 (ENSMMMG00000010935)	NOXO1 (ENSMMMG00000010886)
Eurasian red squirrel	MODERN SPECIES	9	UBE2I (ENSSVLG00005024408) #8	TSR3 (ENSSVLG00005024904) #9	GNPTG (ENSSVLG00005024947) #10	ENSSVLG00005024973	UNKL (ENSSVLG00005017152) #11	UQCC4 (ENSSVLG00005017225) #12	PERCC1 (ENSSVLG00005017276) #13	CCDC154 (ENSSVLG00005017302) #14	CLCN7 (ENSSVLG00005017491) #15	PTX4 (ENSSVLG00005017820) #16	TELO2 (ENSSVLG00005017874) #17	IFT140 (ENSSVLG00005017909) #18	TMEM204 (ENSSVLG00005017964) #19	CRAMP1 (ENSSVLG00005018001) #20	JPT2 (ENSSVLG00005018232) #21	MAPK8IP3 (ENSSVLG00005018319) #22	NME3 (ENSSVLG00005018434) #23	MRPS34 (ENSSVLG00005018518) #24	EME2 (ENSSVLG00005018557) #25	NUBP2 (ENSSVLG00005018731) #27	IGFALS (ENSSVLG00005018848) #28	HAGH (ENSSVLG00005018908) #29	ENSSVLG00005019134 #30	ENSSVLG00005019191 #31	HS3ST6 (ENSSVLG00005019256) #32	MSRB1 (ENSSVLG00005019321) #33	RPL3L (ENSSVLG00005019463) #34	NDUFB10 (ENSSVLG00005019544) #35	ENSSVLG00005019653	RNF151 (ENSSVLG00005019772)	NOXO1 (ENSSVLG00005020093)
Lagomorpha	ANCESTRAL SPECIES	288										ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23
Pika	MODERN SPECIES	5282											ENSOPRG00000001256 #17	IFT140 (ENSOPRG00000001292) #18	TMEM204 (ENSOPRG00000001339) #19	CRAMP1 (ENSOPRG00000001343) #20	JPT2 (ENSOPRG00000001384) #21	MAPK8IP3 (ENSOPRG00000001394) #22	NME3 (ENSOPRG00000001474) #23
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Camelidae	ANCESTRAL SPECIES	33	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Arabian camel	MODERN SPECIES	41	UBE2I (ENSCDRG00005015631) #8	BAIAP3 (ENSCDRG00005008932)	TSR3 (ENSCDRG00005009515) #9	GNPTG (ENSCDRG00005009569) #10	UNKL (ENSCDRG00005009857) #11	UQCC4 (ENSCDRG00005009947) #12	PERCC1 (ENSCDRG00005009982) #13	CCDC154 (ENSCDRG00005010003) #14	CLCN7 (ENSCDRG00005010187) #15	PTX4 (ENSCDRG00005010607) #16	TELO2 (ENSCDRG00005010691) #17	IFT140 (ENSCDRG00005010873) #18	TMEM204 (ENSCDRG00005011342) #19	CRAMP1 (ENSCDRG00005011383) #20	JPT2 (ENSCDRG00005011470) #21	MAPK8IP3 (ENSCDRG00005011576) #22	NME3 (ENSCDRG00005011755) #23	MRPS34 (ENSCDRG00005011817) #24	EME2 (ENSCDRG00005011861) #25	SPSB3 (ENSCDRG00005011937) #26	NUBP2 (ENSCDRG00005012000) #27	IGFALS (ENSCDRG00005012131) #28	HAGH (ENSCDRG00005012164) #29	FAHD1 (ENSCDRG00005012307) #30	ENSCDRG00005012343 #31	HS3ST6 (ENSCDRG00005012599) #32	MSRB1 (ENSCDRG00005012709) #33	RPL3L (ENSCDRG00005012772) #34	NDUFB10 (ENSCDRG00005012823) #35	RPS2 (ENSCDRG00005012917)	RNF151 (ENSCDRG00005013092)
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Pecora	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b	ENSGT00940000153095.g.b.a.a.b
Percora_a	ANCESTRAL SPECIES	9	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00940000153095.g.b.a.a.b
Siberian musk deer	MODERN SPECIES		BAIAP3 (ENSMMSG00000002183)	TSR3 (ENSMMSG00000002150) #9	GNPTG (ENSMMSG00000002130) #10	UNKL (ENSMMSG00000002072) #11	ENSMMSG00000002044 #12	PERCC1 (ENSMMSG00000002030) #13	CCDC154 (ENSMMSG00000002000) #14	CLCN7 (ENSMMSG00000001887) #15	PTX4 (ENSMMSG00000001845) #16	TELO2 (ENSMMSG00000001817) #17	TMEM204 (ENSMMSG00000001793) #19	IFT140 (ENSMMSG00000001736) #18	CRAMP1 (ENSMMSG00000001672) #20	JPT2 (ENSMMSG00000001637) #21	ENSMMSG00000001612	MAPK8IP3 (ENSMMSG00000001572) #22	NME3 (ENSMMSG00000001535) #23	ENSMMSG00000001526 #24	EME2 (ENSMMSG00000001510) #25	SPSB3 (ENSMMSG00000001495) #26	NUBP2 (ENSMMSG00000001476) #27	IGFALS (ENSMMSG00000001466) #28	HAGH (ENSMMSG00000001440) #29	FAHD1 (ENSMMSG00000001429) #30	ENSMMSG00000001365 #31	HS3ST6 (ENSMMSG00000001346) #32	MSRB1 (ENSMMSG00000001336) #33	RPL3L (ENSMMSG00000001316) #34	NDUFB10 (ENSMMSG00000001294) #35	ENSMMSG00000001250	RNF151 (ENSMMSG00000001215)
Bovidae	ANCESTRAL SPECIES	11	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b	ENSGT00940000153095.g.b.a.a.b
Caprinae	ANCESTRAL SPECIES	7	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Goat	MODERN SPECIES	17	ENSCHIG00000013659	UBE2I (ENSCHIG00000017670) #8	BAIAP3 (ENSCHIG00000015762)	TSR3 (ENSCHIG00000016515) #9	GNPTG (ENSCHIG00000012080) #10	UNKL (ENSCHIG00000025940) #11	UQCC4 (ENSCHIG00000017912) #12	CCDC154 (ENSCHIG00000013668) #14	CLCN7 (ENSCHIG00000016124) #15	PTX4 (ENSCHIG00000010150) #16	TELO2 (ENSCHIG00000012866) #17	IFT140 (ENSCHIG00000017137) #18	TMEM204 (ENSCHIG00000008739) #19	CRAMP1 (ENSCHIG00000001484) #20	JPT2 (ENSCHIG00000009778) #21	MAPK8IP3 (ENSCHIG00000020649) #22	NME3 (ENSCHIG00000020916) #23	MRPS34 (ENSCHIG00000026940) #24	SPSB3 (ENSCHIG00000024292) #26	NUBP2 (ENSCHIG00000024194) #27	IGFALS (ENSCHIG00000005524) #28	HAGH (ENSCHIG00000022722) #29	FAHD1 (ENSCHIG00000007917) #30	ENSCHIG00000013357 #31	HS3ST6 (ENSCHIG00000019888) #32	RPL3L (ENSCHIG00000020352) #34	MSRB1 (ENSCHIG00000018373) #33	NDUFB10 (ENSCHIG00000017852) #35	ENSCHIG00000022194	RNF151 (ENSCHIG00000015860)	TBL3 (ENSCHIG00000007747) #37
Rambouillet Sheep	MODERN SPECIES	16	UBE2I (ENSOARG00020026231) #8	BAIAP3 (ENSOARG00020026237)	TSR3 (ENSOARG00020026242) #9	ENSOARG00020026244	UNKL (ENSOARG00020026245) #11	UQCC4 (ENSOARG00020026247) #12	PERCC1 (ENSOARG00020026249) #13	CCDC154 (ENSOARG00020026252) #14	CLCN7 (ENSOARG00020026257) #15	PTX4 (ENSOARG00020026260) #16	TELO2 (ENSOARG00020026262) #17	IFT140 (ENSOARG00020026264) #18	TMEM204 (ENSOARG00020026266) #19	CRAMP1 (ENSOARG00020026270) #20	JPT2 (ENSOARG00020026280) #21	MAPK8IP3 (ENSOARG00020026283) #22	NME3 (ENSOARG00020026291) #23	MRPS34 (ENSOARG00020026293) #24	EME2 (ENSOARG00020026295) #25	SPSB3 (ENSOARG00020026298) #26	NUBP2 (ENSOARG00020026299) #27	IGFALS (ENSOARG00020026302) #28	HAGH (ENSOARG00020026306) #29	FAHD1 (ENSOARG00020026309) #30	ENSOARG00020026311 #31	HS3ST6 (ENSOARG00020026315) #32	MSRB1 (ENSOARG00020026316) #33	RPL3L (ENSOARG00020026318) #34	NDUFB10 (ENSOARG00020026321) #35	ENSOARG00020026326	RNF151 (ENSOARG00020026336)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b.e	ENSGT00940000153095.g.b.a.a.b
Bos	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b.e	ENSGT00940000153095.g.b.a.a.b
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000158868.g.b	ENSGT00550000075088.a.a.ob.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Cow	MODERN SPECIES	17	ENSBTAG00000046965	UBE2I (ENSBTAG00000038866)	BAIAP3 (ENSBTAG00000014100)	TSR3 (ENSBTAG00000014101) #9	ENSBTAG00000051573	UNKL (ENSBTAG00000014126) #11	UQCC4 (ENSBTAG00000033395) #12	CCDC154 (ENSBTAG00000000568) #14	CLCN7 (ENSBTAG00000015889) #15	PTX4 (ENSBTAG00000005148) #16	TELO2 (ENSBTAG00000019086) #17	IFT140 (ENSBTAG00000007245) #18	TMEM204 (ENSBTAG00000007246) #19	CRAMP1 (ENSBTAG00000002202) #20	JPT2 (ENSBTAG00000002209) #21	MAPK8IP3 (ENSBTAG00000002211) #22	ENSBTAG00000052060	NME3 (ENSBTAG00000016552) #23	MRPS34 (ENSBTAG00000026415) #24	EME2 (ENSBTAG00000016553) #25	SPSB3 (ENSBTAG00000016558) #26	NUBP2 (ENSBTAG00000016561) #27	IGFALS (ENSBTAG00000033299) #28	HAGH (ENSBTAG00000019998) #29	FAHD1 (ENSBTAG00000033015) #30	MEIOB (ENSBTAG00000020001) #31	HS3ST6 (ENSBTAG00000019249) #32	MSRB1 (ENSBTAG00000049306) #33	RPL3L (ENSBTAG00000009533) #34	NDUFB10 (ENSBTAG00000009534) #35	RPS2 (ENSBTAG00000009535)
Hybrid Bos Indicus	MODERN SPECIES	17	ENSBIXG00005002428 #8	BAIAP3 (ENSBIXG00005006545)	TSR3 (ENSBIXG00005002420) #9	UNKL (ENSBIXG00005028682) #11	UQCC4 (ENSBIXG00005028709) #12	CCDC154 (ENSBIXG00005004984) #14	CLCN7 (ENSBIXG00005028927) #15	PTX4 (ENSBIXG00005002161) #16	TELO2 (ENSBIXG00005005091) #17	TMEM204 (ENSBIXG00005002103) #19	IFT140 (ENSBIXG00005002075) #18	CRAMP1 (ENSBIXG00005029023) #20	ENSBIXG00005029033	JPT2 (ENSBIXG00005005130) #21	ENSBIXG00005029057	MAPK8IP3 (ENSBIXG00005029132) #22	NME3 (ENSBIXG00005005200) #23	ENSBIXG00005001802 #24	SPSB3 (ENSBIXG00005001778) #26	EME2 (ENSBIXG00005029199) #25	IGFALS (ENSBIXG00005001646) #28	HAGH (ENSBIXG00005029215) #29	FAHD1 (ENSBIXG00005029225) #30	ENSBIXG00005005270 #31	HS3ST6 (ENSBIXG00005005277) #32	MSRB1 (ENSBIXG00005030323) #33	RPL3L (ENSBIXG00005030313) #34	NDUFB10 (ENSBIXG00005030305) #35	ENSBIXG00005030271	RNF151 (ENSBIXG00005030248)	NOXO1 (ENSBIXG00005030231)
Bos_a	ANCESTRAL SPECIES	13	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b.e	ENSGT00530000063647.A.a
Domestic yak	MODERN SPECIES	18	BAIAP3 (ENSBGRG00000026523)	TSR3 (ENSBGRG00000026507) #9	ENSBGRG00000026483 #10	ENSBGRG00000026477	UNKL (ENSBGRG00000026455) #11	UQCC4 (ENSBGRG00000026446) #12	PERCC1 (ENSBGRG00000026443) #13	CCDC154 (ENSBGRG00000026436) #14	CLCN7 (ENSBGRG00000026391) #15	PTX4 (ENSBGRG00000026360) #16	TELO2 (ENSBGRG00000026295) #17	TMEM204 (ENSBGRG00000026263) #19	ENSBGRG00000026261 #18	CRAMP1 (ENSBGRG00000026195) #20	JPT2 (ENSBGRG00000026177) #21	ENSBGRG00000026167 #22	NME3 (ENSBGRG00000026159) #23	MRPS34 (ENSBGRG00000026152) #24	EME2 (ENSBGRG00000026143) #25	SPSB3 (ENSBGRG00000026135) #26	NUBP2 (ENSBGRG00000026125) #27	IGFALS (ENSBGRG00000026120) #28	HAGH (ENSBGRG00000026102) #29	FAHD1 (ENSBGRG00000026099) #30	ENSBGRG00000026058 #31	HS3ST6 (ENSBGRG00000026037) #32	MSRB1 (ENSBGRG00000026025) #33	RPL3L (ENSBGRG00000026001) #34	NDUFB10 (ENSBGRG00000025973) #35	ENSBGRG00000025950	RNF151 (ENSBGRG00000025932)
Wild yak	MODERN SPECIES	26	ENSBMUG00000022756 #8	BAIAP3 (ENSBMUG00000022642)	TSR3 (ENSBMUG00000022273) #9	ENSBMUG00000022218	UNKL (ENSBMUG00000022212) #11	UQCC4 (ENSBMUG00000022202) #12	CCDC154 (ENSBMUG00000022178) #14	CLCN7 (ENSBMUG00000022135) #15	ENSBMUG00000022093	ENSBMUG00000022086	TELO2 (ENSBMUG00000022079) #17	TMEM204 (ENSBMUG00000022060) #19	IFT140 (ENSBMUG00000022034) #18	CRAMP1 (ENSBMUG00000021918) #20	JPT2 (ENSBMUG00000021647) #21	MAPK8IP3 (ENSBMUG00000020161) #22	ENSBMUG00000018193 #23	MRPS34 (ENSBMUG00000018185) #24	EME2 (ENSBMUG00000018170) #25	SPSB3 (ENSBMUG00000018145) #26	NUBP2 (ENSBMUG00000018133) #27	IGFALS (ENSBMUG00000018107) #28	HAGH (ENSBMUG00000018096) #29	FAHD1 (ENSBMUG00000018088) #30	ENSBMUG00000018062 #31	HS3ST6 (ENSBMUG00000018022) #32	MSRB1 (ENSBMUG00000018003) #33	RPL3L (ENSBMUG00000017984) #34	NDUFB10 (ENSBMUG00000017948) #35	ENSBMUG00000017908	RNF151 (ENSBMUG00000017871)
American bison	MODERN SPECIES	2098											TELO2 (ENSBBBG00000007334) #17	ENSBBBG00000022511 #18	TMEM204 (ENSBBBG00000022464) #19	CRAMP1 (ENSBBBG00000022440) #20	JPT2 (ENSBBBG00000022366) #21	ENSBBBG00000022347 #22	ENSBBBG00000005890 #23	MRPS34 (ENSBBBG00000005888) #24
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1	TSR3 (ENSCHYG00000000981) #9	GNPTG (ENSCHYG00000000992) #10	UNKL (ENSCHYG00000001093) #11	UQCC4 (ENSCHYG00000001141) #12	PERCC1 (ENSCHYG00000001151) #13	CCDC154 (ENSCHYG00000001172) #14	CLCN7 (ENSCHYG00000001248) #15	PTX4 (ENSCHYG00000001547) #16	TELO2 (ENSCHYG00000001588) #17	ENSCHYG00000001722 #18	ENSCHYG00000001737 #19	ENSCHYG00000001757 #18	CRAMP1 (ENSCHYG00000001817) #20	ENSCHYG00000001980 #21	ENSCHYG00000002004 #22	ENSCHYG00000002013 #22	NME3 (ENSCHYG00000002029) #23	MRPS34 (ENSCHYG00000002055) #24	ENSCHYG00000002065 #25	ENSCHYG00000002081 #26	NUBP2 (ENSCHYG00000002104) #27	IGFALS (ENSCHYG00000002142) #28	HAGH (ENSCHYG00000002161) #29	FAHD1 (ENSCHYG00000002322) #30	ENSCHYG00000002342 #31	HS3ST6 (ENSCHYG00000002357) #32	MSRB1 (ENSCHYG00000002367) #33	RPL3L (ENSCHYG00000002392) #34	NDUFB10 (ENSCHYG00000002424) #35	ENSCHYG00000002454	RNF151 (ENSCHYG00000002494)
Yarkand deer	MODERN SPECIES	1	BAIAP3 (ENSCHYG00000000754)	TSR3 (ENSCHYG00000000981) #9	GNPTG (ENSCHYG00000000992) #10	UNKL (ENSCHYG00000001093) #11	UQCC4 (ENSCHYG00000001141) #12	PERCC1 (ENSCHYG00000001151) #13	CCDC154 (ENSCHYG00000001172) #14	CLCN7 (ENSCHYG00000001248) #15	PTX4 (ENSCHYG00000001547) #16	TELO2 (ENSCHYG00000001588) #17	ENSCHYG00000001722 #18	ENSCHYG00000001737 #19	ENSCHYG00000001757 #18	CRAMP1 (ENSCHYG00000001817) #20	ENSCHYG00000001980 #21	ENSCHYG00000002004 #22	ENSCHYG00000002013 #22	NME3 (ENSCHYG00000002029) #23	MRPS34 (ENSCHYG00000002055) #24	ENSCHYG00000002065 #25	ENSCHYG00000002081 #26	NUBP2 (ENSCHYG00000002104) #27	IGFALS (ENSCHYG00000002142) #28	HAGH (ENSCHYG00000002161) #29	FAHD1 (ENSCHYG00000002322) #30	ENSCHYG00000002342 #31	HS3ST6 (ENSCHYG00000002357) #32	MSRB1 (ENSCHYG00000002367) #33	RPL3L (ENSCHYG00000002392) #34	NDUFB10 (ENSCHYG00000002424) #35	ENSCHYG00000002454
Cetacea	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	6	ENSBMSG00010022153	ENSBMSG00010022163	UBE2I (ENSBMSG00010009619) #8	BAIAP3 (ENSBMSG00010009701)	TSR3 (ENSBMSG00010010039) #9	GNPTG (ENSBMSG00010010050) #10	UNKL (ENSBMSG00010010085) #11	UQCC4 (ENSBMSG00010010125) #12	PERCC1 (ENSBMSG00010010139) #13	CLCN7 (ENSBMSG00010010255) #15	TELO2 (ENSBMSG00010010337) #17	IFT140 (ENSBMSG00010010364) #18	TMEM204 (ENSBMSG00010010376) #19	CRAMP1 (ENSBMSG00010010410) #20	JPT2 (ENSBMSG00010010484) #21	ENSBMSG00010010504 #22	NME3 (ENSBMSG00010010525) #23	MRPS34 (ENSBMSG00010010537) #24	SPSB3 (ENSBMSG00010010546) #26	NUBP2 (ENSBMSG00010010561) #27	IGFALS (ENSBMSG00010010573) #28	HAGH (ENSBMSG00010010591) #29	FAHD1 (ENSBMSG00010010608) #30	ENSBMSG00010010669 #31	HS3ST6 (ENSBMSG00010010685) #32	MSRB1 (ENSBMSG00010010701) #33	RPL3L (ENSBMSG00010010716) #34	NDUFB10 (ENSBMSG00010010734) #35	ENSBMSG00010010763	RNF151 (ENSBMSG00010010820)	TBL3 (ENSBMSG00010010856) #37
Blue whale	MODERN SPECIES	13	ENSBMSG00010014343	TEX15 (ENSBMSG00010014389)	PURG (ENSBMSG00010014438)	WRN (ENSBMSG00010014474)	NRG1 (ENSBMSG00010014675)	ENSBMSG00010015301	ENSBMSG00010015316	FUT10 (ENSBMSG00010015342)	MAK16 (ENSBMSG00010015377)	TTI2 (ENSBMSG00010015408)	ENSBMSG00010015446	DUSP26 (ENSBMSG00010015488)	ENSBMSG00010015521	UNC5D (ENSBMSG00010015617)	ENSBMSG00010015995	ENSBMSG00010016002 #22	ENSBMSG00010016024	KCNU1 (ENSBMSG00010016059)	ENSBMSG00010016178	ENSBMSG00010016207	ZNF703 (ENSBMSG00010016237)	ERLIN2 (ENSBMSG00010016263)	PLPBP (ENSBMSG00010016317)	ADGRA2 (ENSBMSG00010016355)	BRF2 (ENSBMSG00010016388)	ENSBMSG00010016415	GOT1L1 (ENSBMSG00010016452)	ADRB3 (ENSBMSG00010016494)	EIF4EBP1 (ENSBMSG00010016512)	ENSBMSG00010016541	ENSBMSG00010016606
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a
Dolphin	MODERN SPECIES	2804													ENSTTRG00000011369	CRAMP1 (ENSTTRG00000011376) #20	HN1L (ENSTTRG00000011377) #21	MAPK8IP3 (ENSTTRG00000011379) #22	NME3 (ENSTTRG00000011380) #23	MRPS34 (ENSTTRG00000011381) #24	EME2 (ENSTTRG00000011382) #25	SPSB3 (ENSTTRG00000011383) #26	NUBP2 (ENSTTRG00000011384) #27	IGFALS (ENSTTRG00000011385) #28	HAGH (ENSTTRG00000011386) #29	FAHD1 (ENSTTRG00000011387) #30	ENSTTRG00000011388 #31	HS3ST6 (ENSTTRG00000011389) #32	ENSTTRG00000011390 #33	RPL3L (ENSTTRG00000011391) #34	NDUFB10 (ENSTTRG00000011392) #35	RPS2 (ENSTTRG00000011393)	RNF151 (ENSTTRG00000011394)
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Vaquita	MODERN SPECIES	6	ENSPSNG00000007742	UBE2I (ENSPSNG00000007796) #8	BAIAP3 (ENSPSNG00000007889)	TSR3 (ENSPSNG00000008704) #9	GNPTG (ENSPSNG00000008733) #10	UNKL (ENSPSNG00000008782) #11	UQCC4 (ENSPSNG00000008842) #12	PERCC1 (ENSPSNG00000008871) #13	CLCN7 (ENSPSNG00000009258) #15	ENSPSNG00000009353	TELO2 (ENSPSNG00000009395) #17	IFT140 (ENSPSNG00000009483) #18	TMEM204 (ENSPSNG00000009646) #19	CRAMP1 (ENSPSNG00000009750) #20	JPT2 (ENSPSNG00000010117) #21	MAPK8IP3 (ENSPSNG00000010221) #22	NME3 (ENSPSNG00000010342) #23	MRPS34 (ENSPSNG00000010465) #24	SPSB3 (ENSPSNG00000010505) #26	NUBP2 (ENSPSNG00000010556) #27	IGFALS (ENSPSNG00000010635) #28	HAGH (ENSPSNG00000010692) #29	FAHD1 (ENSPSNG00000010819) #30	ENSPSNG00000010896 #31	HS3ST6 (ENSPSNG00000011004) #32	MSRB1 (ENSPSNG00000011031) #33	RPL3L (ENSPSNG00000011070) #34	NDUFB10 (ENSPSNG00000011191) #35	RPS2 (ENSPSNG00000011290)	RNF151 (ENSPSNG00000011420)	TBL3 (ENSPSNG00000011502) #37
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Narwhal	MODERN SPECIES	299	UBE2I (ENSMMNG00015002771) #8	BAIAP3 (ENSMMNG00015002823)	TSR3 (ENSMMNG00015002901) #9	GNPTG (ENSMMNG00015002928) #10	UNKL (ENSMMNG00015002979) #11	UQCC4 (ENSMMNG00015003011) #12	PERCC1 (ENSMMNG00015003027) #13	CCDC154 (ENSMMNG00015003052) #14	CLCN7 (ENSMMNG00015003119) #15	PTX4 (ENSMMNG00015003188) #16	TELO2 (ENSMMNG00015003226) #17	IFT140 (ENSMMNG00015003282) #18	TMEM204 (ENSMMNG00015003375) #19	CRAMP1 (ENSMMNG00015003411) #20	JPT2 (ENSMMNG00015003456) #21	ENSMMNG00015003486 #22	NME3 (ENSMMNG00015003514) #23	MRPS34 (ENSMMNG00015003531) #24	ENSMMNG00015003543	SPSB3 (ENSMMNG00015003567) #26	NUBP2 (ENSMMNG00015003598) #27	IGFALS (ENSMMNG00015003621) #28	HAGH (ENSMMNG00015003649) #29	FAHD1 (ENSMMNG00015003677) #30	ENSMMNG00015003718 #31	HS3ST6 (ENSMMNG00015003744) #32	MSRB1 (ENSMMNG00015003761) #33	RPL3L (ENSMMNG00015003791) #34	NDUFB10 (ENSMMNG00015003819) #35	ENSMMNG00015003862	RNF151 (ENSMMNG00015003919)
Beluga whale	MODERN SPECIES	48	ENSDLEG00000007070	UBE2I (ENSDLEG00000007079) #8	BAIAP3 (ENSDLEG00000007093)	TSR3 (ENSDLEG00000007161) #9	GNPTG (ENSDLEG00000007174) #10	UNKL (ENSDLEG00000007219) #11	CUNH16orf91 (ENSDLEG00000007246) #12	PERCC1 (ENSDLEG00000007267) #13	CLCN7 (ENSDLEG00000007278) #15	PTX4 (ENSDLEG00000007294) #16	TELO2 (ENSDLEG00000007302) #17	IFT140 (ENSDLEG00000007323) #18	TMEM204 (ENSDLEG00000007342) #19	CRAMP1 (ENSDLEG00000007347) #20	JPT2 (ENSDLEG00000007393) #21	MAPK8IP3 (ENSDLEG00000007432) #22	NME3 (ENSDLEG00000007506) #23	MRPS34 (ENSDLEG00000007513) #24	SPSB3 (ENSDLEG00000007517) #26	ENSDLEG00000007525 #27	IGFALS (ENSDLEG00000007530) #28	HAGH (ENSDLEG00000007559) #29	FAHD1 (ENSDLEG00000007618) #30	MEIOB (ENSDLEG00000007627) #31	HS3ST6 (ENSDLEG00000007636) #32	MSRB1 (ENSDLEG00000007639) #33	RPL3L (ENSDLEG00000007645) #34	NDUFB10 (ENSDLEG00000007659) #35	RPS2 (ENSDLEG00000007664)	ENSDLEG00000007673	TBL3 (ENSDLEG00000007683) #37
Suina	ANCESTRAL SPECIES	28	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A.eb #18	ENSGT00390000015528 #19	ENSGT00940000153417.A.db #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Pig	MODERN SPECIES	11	BAIAP3 (ENSSSCG00000008029)	TSR3 (ENSSSCG00000008030) #9	ENSSSCG00000063096	GNPTG (ENSSSCG00000008031) #10	UNKL (ENSSSCG00000022963) #11	UQCC4 (ENSSSCG00000038882) #12	PERCC1 (ENSSSCG00000048138) #13	CCDC154 (ENSSSCG00000028139) #14	CLCN7 (ENSSSCG00000008024) #15	PTX4 (ENSSSCG00000037262) #16	TELO2 (ENSSSCG00000008022) #17	TMEM204 (ENSSSCG00000008021) #19	IFT140 (ENSSSCG00000008020) #18	CRAMP1 (ENSSSCG00000008026) #20	JPT2 (ENSSSCG00000008019) #21	MAPK8IP3 (ENSSSCG00000008018) #22	NME3 (ENSSSCG00000008017) #23	MRPS34 (ENSSSCG00000008016) #24	EME2 (ENSSSCG00000021467) #25	SPSB3 (ENSSSCG00000039024) #26	NUBP2 (ENSSSCG00000008014) #27	IGFALS (ENSSSCG00000008013) #28	FAHD1 (ENSSSCG00000039715) #30	ENSSSCG00000008012 #29	ENSSSCG00000025711 #31	HS3ST6 (ENSSSCG00000031216) #32	MSRB1 (ENSSSCG00000032932) #33	RPL3L (ENSSSCG00000032657) #34	NDUFB10 (ENSSSCG00000030328) #35	ENSSSCG00000033697	RNF151 (ENSSSCG00000034728)
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	848																ENSCWAG00000010875 #22	NME3 (ENSCWAG00000010828) #23	MRPS34 (ENSCWAG00000010813) #24	EME2 (ENSCWAG00000010752) #25	SPSB3 (ENSCWAG00000010677) #26	NUBP2 (ENSCWAG00000010505) #27	IGFALS (ENSCWAG00000010469) #28	HAGH (ENSCWAG00000010381) #29	FAHD1 (ENSCWAG00000010358) #30	ENSCWAG00000010137 #31	HS3ST6 (ENSCWAG00000010100) #32	MSRB1 (ENSCWAG00000010076) #33	RPL3L (ENSCWAG00000009981) #34	NDUFB10 (ENSCWAG00000009923) #35	ENSCWAG00000009812	RNF151 (ENSCWAG00000009774)
Chacoan peccary	MODERN SPECIES	847												TMEM204 (ENSCWAG00000021617) #19	ENSCWAG00000021584 #18	CRAMP1 (ENSCWAG00000021570) #20	JPT2 (ENSCWAG00000021561) #21	ENSCWAG00000021556 #22
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Carnivora	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Caniformia	ANCESTRAL SPECIES	8	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Ursidae	ANCESTRAL SPECIES	3	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.f #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Ursus	ANCESTRAL SPECIES	9	ENSGT01100000263714	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.f #35	ENSGT00940000153095.g.b.a.a.a.b.b	ENSGT00530000063647.A.a
American black bear	MODERN SPECIES	20	ENSUAMG00000013123	ENSUAMG00000013236 #8	UBE2I (ENSUAMG00000013240) #8	TSR3 (ENSUAMG00000013272) #9	GNPTG (ENSUAMG00000013274) #10	ENSUAMG00000013279 #11	UQCC4 (ENSUAMG00000013285) #12	CCDC154 (ENSUAMG00000013288) #14	CLCN7 (ENSUAMG00000013295) #15	PTX4 (ENSUAMG00000013300) #16	TELO2 (ENSUAMG00000013302) #17	IFT140 (ENSUAMG00000013306) #18	TMEM204 (ENSUAMG00000013309) #19	CRAMP1 (ENSUAMG00000013313) #20	JPT2 (ENSUAMG00000013315) #21	MAPK8IP3 (ENSUAMG00000013316) #22	NME3 (ENSUAMG00000013321) #23	MRPS34 (ENSUAMG00000013323) #24	EME2 (ENSUAMG00000013324) #25	SPSB3 (ENSUAMG00000013326) #26	NUBP2 (ENSUAMG00000013327) #27	IGFALS (ENSUAMG00000013329) #28	HAGH (ENSUAMG00000013330) #29	FAHD1 (ENSUAMG00000013331) #30
Polar bear	MODERN SPECIES	200	ENSUMAG00000021203	ENSUMAG00000021206	ENSUMAG00000021227	ENSUMAG00000021302 #8	ENSUMAG00000021305 #8	GNPTG (ENSUMAG00000021320) #10	ENSUMAG00000021347 #9	ENSUMAG00000021354 #12	CLCN7 (ENSUMAG00000021373) #15	PTX4 (ENSUMAG00000021453) #16	TELO2 (ENSUMAG00000021492) #17	IFT140 (ENSUMAG00000021605) #18	TMEM204 (ENSUMAG00000021614) #19	CRAMP1 (ENSUMAG00000021635) #20	JPT2 (ENSUMAG00000021688) #21	MAPK8IP3 (ENSUMAG00000021776) #22	SPSB3 (ENSUMAG00000022049) #26	NUBP2 (ENSUMAG00000022054) #27	HAGH (ENSUMAG00000022061) #29	FAHD1 (ENSUMAG00000022065) #30	ENSUMAG00000022070 #31	ENSUMAG00000022090 #33	RPL3L (ENSUMAG00000022104) #34	NDUFB10 (ENSUMAG00000022118) #35	RPS2 (ENSUMAG00000022123)	RNF151 (ENSUMAG00000022133)	TBL3 (ENSUMAG00000022149) #37	NOXO1 (ENSUMAG00000022239)	GFER (ENSUMAG00000022251)	ZNF598 (ENSUMAG00000022253)	ENSUMAG00000022255
Giant Panda	MODERN SPECIES	1	ENSAMEG00000007659	ENSAMEG00000031028	ENSAMEG00000007708	UBE2I (ENSAMEG00000007721) #8	BAIAP3 (ENSAMEG00000007748)	ENSAMEG00000007859 #9	ENSAMEG00000030878	ENSAMEG00000007981 #12	CCDC154 (ENSAMEG00000007986) #14	CLCN7 (ENSAMEG00000007997) #15	TELO2 (ENSAMEG00000008092) #17	ENSAMEG00000008206 #19	IFT140 (ENSAMEG00000008128) #18	CRAMP1 (ENSAMEG00000008213) #20	JPT2 (ENSAMEG00000008232) #21	MAPK8IP3 (ENSAMEG00000008238) #22	ENSAMEG00000024318 #23	MRPS34 (ENSAMEG00000031331) #24	EME2 (ENSAMEG00000008393) #25	SPSB3 (ENSAMEG00000008400) #26	NUBP2 (ENSAMEG00000008409) #27	IGFALS (ENSAMEG00000008445) #28	FAHD1 (ENSAMEG00000018730) #30	ENSAMEG00000008475 #31	ENSAMEG00000025433 #32	MSRB1 (ENSAMEG00000008487) #33	RPL3L (ENSAMEG00000008489) #34	NDUFB10 (ENSAMEG00000008522) #35	RPS2 (ENSAMEG00000007366)	RNF151 (ENSAMEG00000017653)	TBL3 (ENSAMEG00000017654) #37
Mustelinae	ANCESTRAL SPECIES	15	ENSGT00940000162207	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Ferret	MODERN SPECIES	189	ENSMPUG00000015766	ENSMPUG00000015765	UBE2I (ENSMPUG00000015763) #8	BAIAP3 (ENSMPUG00000015667)	TSR3 (ENSMPUG00000015659) #9	GNPTG (ENSMPUG00000015655) #10	UNKL (ENSMPUG00000015653) #11	UQCC4 (ENSMPUG00000015644) #12	CCDC154 (ENSMPUG00000015637) #14	CLCN7 (ENSMPUG00000015633) #15	TELO2 (ENSMPUG00000015631) #17	TMEM204 (ENSMPUG00000015628) #19	IFT140 (ENSMPUG00000015620) #18	ENSMPUG00000020062	CRAMP1 (ENSMPUG00000015618) #20	MAPK8IP3 (ENSMPUG00000015614) #22	MRPS34 (ENSMPUG00000015607) #24	EME2 (ENSMPUG00000015605) #25	SPSB3 (ENSMPUG00000015597) #26	NUBP2 (ENSMPUG00000015596) #27	IGFALS (ENSMPUG00000015594) #28	HAGH (ENSMPUG00000015572) #29	FAHD1 (ENSMPUG00000020061) #30	ENSMPUG00000015569 #31	HS3ST6 (ENSMPUG00000015567) #32	RPL3L (ENSMPUG00000015565) #34	NDUFB10 (ENSMPUG00000015557) #35	RPS2 (ENSMPUG00000015547)	RNF151 (ENSMPUG00000015546)	TBL3 (ENSMPUG00000015545) #37	NOXO1 (ENSMPUG00000015539)
American mink	MODERN SPECIES	111	ENSNVIG00000018382	UBE2I (ENSNVIG00000018606) #8	BAIAP3 (ENSNVIG00000018645)	TSR3 (ENSNVIG00000018868) #9	GNPTG (ENSNVIG00000018874) #10	UNKL (ENSNVIG00000018903) #11	UQCC4 (ENSNVIG00000018965) #12	CCDC154 (ENSNVIG00000018991) #14	CLCN7 (ENSNVIG00000019024) #15	PTX4 (ENSNVIG00000019142) #16	TELO2 (ENSNVIG00000019150) #17	IFT140 (ENSNVIG00000019190) #18	TM204 (ENSNVIG00000019228) #19	CRAMP1 (ENSNVIG00000019268) #20	JPT2 (ENSNVIG00000019338) #21	MAPK8IP3 (ENSNVIG00000019434) #22	ENSNVIG00000021975 #23	MRPS34 (ENSNVIG00000021989) #24	EME2 (ENSNVIG00000022005) #25	SPSB3 (ENSNVIG00000022024) #26	NUBP2 (ENSNVIG00000022036) #27	IGFALS (ENSNVIG00000022037) #28	ENSNVIG00000022054 #29	FAHD1 (ENSNVIG00000022077) #30	C9J0S1 (ENSNVIG00000022084) #31	HS3ST6 (ENSNVIG00000022091) #32	MSRB1 (ENSNVIG00000022096) #33	RPL3L (ENSNVIG00000022110) #34	ENSNVIG00000022130 #35	ENSNVIG00000022145	RNF151 (ENSNVIG00000022168)
Canidae	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a.db.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00550000075088.a.a.db.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Dingo	MODERN SPECIES	172	ENSCAFG00020001407	ENSCAFG00020001370 #8	BAIAP3 (ENSCAFG00020001352)	TSR3 (ENSCAFG00020001344) #9	GNPTG (ENSCAFG00020001337) #10	UNKL (ENSCAFG00020001284) #11	UQCC4 (ENSCAFG00020001278) #12	CCDC154 (ENSCAFG00020001227) #14	CLCN7 (ENSCAFG00020001216) #15	PTX4 (ENSCAFG00020001191) #16	TELO2 (ENSCAFG00020001179) #17	TMEM204 (ENSCAFG00020001166) #19	IFT140 (ENSCAFG00020001129) #18	CRAMP1 (ENSCAFG00020000788) #20	JPT2 (ENSCAFG00020000738) #21	MAPK8IP3 (ENSCAFG00020000709) #22	MRPS34 (ENSCAFG00020000675) #24	EME2 (ENSCAFG00020000621) #25	SPSB3 (ENSCAFG00020000616) #26	NUBP2 (ENSCAFG00020000610) #27	IGFALS (ENSCAFG00020000602) #28	HAGH (ENSCAFG00020000595) #29	FAHD1 (ENSCAFG00020000583) #30	ENSCAFG00020000382 #31	HS3ST6 (ENSCAFG00020000329) #32	MSRB1 (ENSCAFG00020000325) #33	RPL3L (ENSCAFG00020000233) #34	ENSCAFG00020000199 #35	ENSCAFG00020026327	RNF151 (ENSCAFG00020026323)	TBL3 (ENSCAFG00020026321) #37
Dog	MODERN SPECIES	34	ENSCAFG00845022862	ENSCAFG00845022755	ENSCAFG00845022697	UNKL (ENSCAFG00845022286) #11	C6H16orf91 (ENSCAFG00845022262) #12	ENSCAFG00845022174 #9	PERCC1 (ENSCAFG00845022143) #13	CCDC154 (ENSCAFG00845022050) #14	CLCN7 (ENSCAFG00845021512) #15	PTX4 (ENSCAFG00845021394) #16	TELO2 (ENSCAFG00845021282) #17	ENSCAFG00845021199 #19	IFT140 (ENSCAFG00845021074) #18	CRAMP1 (ENSCAFG00845020921) #20	JPT2 (ENSCAFG00845020882) #21	MAPK8IP3 (ENSCAFG00845019811) #22	MRPS34 (ENSCAFG00845019497) #24	ENSCAFG00845019435 #25	SPSB3 (ENSCAFG00845019224) #26	NUBP2 (ENSCAFG00845019149) #27	IGFALS (ENSCAFG00845019117) #28	FAHD1 (ENSCAFG00845019076) #30	HAGH (ENSCAFG00845018825) #29	ENSCAFG00845018651 #31	HS3ST6 (ENSCAFG00845018590) #32	MSRB1 (ENSCAFG00845018543) #33	RPL3L (ENSCAFG00845018359) #34	ENSCAFG00845018221	NDUFB10 (ENSCAFG00845018108) #35	RNF151 (ENSCAFG00845018062)	TBL3 (ENSCAFG00845017737) #37
Red fox	MODERN SPECIES	200	ENSVVUG00000011326	ENSVVUG00000011324	ENSVVUG00000011321	ENSVVUG00000011291 #8	BAIAP3 (ENSVVUG00000011214)	GNPTG (ENSVVUG00000011194) #10	UNKL (ENSVVUG00000011182) #11	TSR3 (ENSVVUG00000011174) #9	CCDC154 (ENSVVUG00000011157) #14	CLCN7 (ENSVVUG00000011067) #15	PTX4 (ENSVVUG00000011033) #16	TELO2 (ENSVVUG00000011008) #17	TMEM204 (ENSVVUG00000010997) #19	IFT140 (ENSVVUG00000010908) #18	JPT2 (ENSVVUG00000010820) #20	MAPK8IP3 (ENSVVUG00000010026) #22	MRPS34 (ENSVVUG00000010000) #24	SPSB3 (ENSVVUG00000009994) #26	NUBP2 (ENSVVUG00000009958) #27	IGFALS (ENSVVUG00000009953) #28	HAGH (ENSVVUG00000009937) #29	FAHD1 (ENSVVUG00000009934) #30	MEIOB (ENSVVUG00000009837) #31	HS3ST6 (ENSVVUG00000009829) #32	MSRB1 (ENSVVUG00000009825) #33	RPL3L (ENSVVUG00000009805) #34	NDUFB10 (ENSVVUG00000009798) #35	ENSVVUG00000009633	RNF151 (ENSVVUG00000009605)	TBL3 (ENSVVUG00000009589) #37	ENSVVUG00000009559
Felidae	ANCESTRAL SPECIES	25	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.m #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.a #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Cat	MODERN SPECIES	247	UBE2I (ENSFCAG00000027291) #8	TSR3 (ENSFCAG00000029607) #9	GNPTG (ENSFCAG00000010641) #10	ENSFCAG00000049219	UNKL (ENSFCAG00000010643) #11	UQCC4 (ENSFCAG00000040994) #12	PERCC1 (ENSFCAG00000043313) #13	CCDC154 (ENSFCAG00000010649) #14	CLCN7 (ENSFCAG00000010650) #15	PTX4 (ENSFCAG00000043223) #16	TELO2 (ENSFCAG00000010652) #17	TMEM204 (ENSFCAG00000033771) #19	IFT140 (ENSFCAG00000010653) #18	CRAMP1 (ENSFCAG00000011852) #20	JPT2 (ENSFCAG00000034589) #21	MAPK8IP3 (ENSFCAG00000011724) #22	NME3 (ENSFCAG00000046405) #23	MRPS34 (ENSFCAG00000022788) #24	EME2 (ENSFCAG00000011728) #25	SPSB3 (ENSFCAG00000011730) #26	NUBP2 (ENSFCAG00000024659) #27	IGFALS (ENSFCAG00000040872) #28	HAGH (ENSFCAG00000011731) #29	FAHD1 (ENSFCAG00000031483) #30	MEIOB (ENSFCAG00000011733) #31	HS3ST6 (ENSFCAG00000038639) #32	MSRB1 (ENSFCAG00000039302) #33	RPL3L (ENSFCAG00000011737) #34	NDUFB10 (ENSFCAG00000011738) #35	RPS2 (ENSFCAG00000029191)	RNF151 (ENSFCAG00000011739)
Panthera	ANCESTRAL SPECIES	29	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.m #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.a #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Panthera_a	ANCESTRAL SPECIES	31	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.m #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.a #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
lion	MODERN SPECIES	16	BAIAP3 (ENSPLOG00000016379)	TSR3 (ENSPLOG00000018457) #9	GNPTG (ENSPLOG00000018526) #10	ENSPLOG00000018640 #11	ENSPLOG00000018710 #11	UQCC4 (ENSPLOG00000011247) #12	PERCC1 (ENSPLOG00000011277) #13	CCDC154 (ENSPLOG00000011307) #14	CLCN7 (ENSPLOG00000011352) #15	PTX4 (ENSPLOG00000011504) #16	TELO2 (ENSPLOG00000011575) #17	IFT140 (ENSPLOG00000011769) #18	TMEM204 (ENSPLOG00000011810) #19	CRAMP1 (ENSPLOG00000011890) #20	JPT2 (ENSPLOG00000012622) #21	MAPK8IP3 (ENSPLOG00000012791) #22	NME3 (ENSPLOG00000013752) #23	MRPS34 (ENSPLOG00000013830) #24	EME2 (ENSPLOG00000013867) #25	SPSB3 (ENSPLOG00000013972) #26	NUBP2 (ENSPLOG00000014050) #27	IGFALS (ENSPLOG00000014256) #28	HAGH (ENSPLOG00000014311) #29	FAHD1 (ENSPLOG00000014422) #30	ENSPLOG00000014482 #31	HS3ST6 (ENSPLOG00000014723) #32	MSRB1 (ENSPLOG00000014740) #33	RPL3L (ENSPLOG00000014800) #34	NDUFB10 (ENSPLOG00000014912) #35	RPS2 (ENSPLOG00000015051)	RNF151 (ENSPLOG00000015190)
leopard	MODERN SPECIES	53	BAIAP3 (ENSPPRG00000010898)	TSR3 (ENSPPRG00000023265) #9	ENSPPRG00000022569	GNPTG (ENSPPRG00000022265) #10	UNKL (ENSPPRG00000018472) #11	UQCC4 (ENSPPRG00000013700) #12	PERCC1 (ENSPPRG00000013524) #13	CCDC154 (ENSPPRG00000013178) #14	CLCN7 (ENSPPRG00000012073) #15	PTX4 (ENSPPRG00000009473) #16	TELO2 (ENSPPRG00000006967) #17	IFT140 (ENSPPRG00000005374) #18	TMEM204 (ENSPPRG00000004432) #19	CRAMP1 (ENSPPRG00000003952) #20	JPT2 (ENSPPRG00000001951) #21	MAPK8IP3 (ENSPPRG00000001108) #22	ENSPPRG00000021662 #23	MRPS34 (ENSPPRG00000021470) #24	EME2 (ENSPPRG00000020258) #25	SPSB3 (ENSPPRG00000018726) #26	NUBP2 (ENSPPRG00000017030) #27	IGFALS (ENSPPRG00000013707) #28	HAGH (ENSPPRG00000012875) #29	FAHD1 (ENSPPRG00000012078) #30	ENSPPRG00000011909 #31	HS3ST6 (ENSPPRG00000010023) #32	ENSPPRG00000009865 #33	ENSPPRG00000006325 #33	RPL3L (ENSPPRG00000005785) #34	ENSPPRG00000004667 #35	RPS2 (ENSPPRG00000004155)
Tiger	MODERN SPECIES	590					ENSPTIG00000021566	ENSPTIG00000021646	UBE2I (ENSPTIG00000021666) #8	TSR3 (ENSPTIG00000000359) #9	UNKL (ENSPTIG00000000863) #11	CLCN7 (ENSPTIG00000005037) #15	PTX4 (ENSPTIG00000005448) #16	TELO2 (ENSPTIG00000005753) #17	IFT140 (ENSPTIG00000005835) #18	TMEM204 (ENSPTIG00000006591) #19	JPT2 (ENSPTIG00000007704) #21	MAPK8IP3 (ENSPTIG00000007779) #22	EME2 (ENSPTIG00000008505) #25	NUBP2 (ENSPTIG00000008814) #27	HAGH (ENSPTIG00000008853) #29	FAHD1 (ENSPTIG00000009011) #30	ENSPTIG00000009036 #31	HS3ST6 (ENSPTIG00000009671) #32	MSRB1 (ENSPTIG00000009446) #33	RPL3L (ENSPTIG00000009722) #34	NDUFB10 (ENSPTIG00000009910) #35	ENSPTIG00000010284	ENSPTIG00000010338	TBL3 (ENSPTIG00000010377) #37	ENSPTIG00000010738	GFER (ENSPTIG00000011023)	NHERF2 (ENSPTIG00000011167)
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Equus	ANCESTRAL SPECIES	32	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Donkey	DUPLICATION
Donkey	DUPLICATION
Donkey	MODERN SPECIES	5	TSR3 (ENSEASG00005000250) #9	ENSEASG00005000258 #10	UNKL (ENSEASG00005000274) #11	ENSEASG00005034982 #12	PERCC1 (ENSEASG00005027506) #13	CCDC154 (ENSEASG00005000415) #14	CLCN7 (ENSEASG00005000520) #15	PTX4 (ENSEASG00005036837) #16	TELO2 (ENSEASG00005000596) #17	IFT140 (ENSEASG00005001221) #18	TMEM204 (ENSEASG00005001516) #19	CRAMP1 (ENSEASG00005001568) #20	JPT2 (ENSEASG00005025904) #21	ENSEASG00005038396 #22	ENSEASG00005034484 #22	ENSEASG00005001955 #22	NME3 (ENSEASG00005035536) #23	ENSEASG00005025961 #24	ENSEASG00005025437 #25	SPSB3 (ENSEASG00005026398) #26	NUBP2 (ENSEASG00005035230) #27	IGFALS (ENSEASG00005004586) #28	HAGH (ENSEASG00005004592) #29	FAHD1 (ENSEASG00005030060) #30	ENSEASG00005004600 #31	ENSEASG00005015561	HS3ST6 (ENSEASG00005004607) #32	RPL3L (ENSEASG00005009140) #34	ENSEASG00005033190	NDUFB10 (ENSEASG00005028164) #35	RPS2 (ENSEASG00005004630)
Donkey	MODERN SPECIES	5	UBE2I (ENSEASG00005000142) #8	ENSEASG00005000233	TSR3 (ENSEASG00005000250) #9	ENSEASG00005000258 #10	UNKL (ENSEASG00005000274) #11	ENSEASG00005034982 #12	PERCC1 (ENSEASG00005027506) #13	CCDC154 (ENSEASG00005000415) #14	CLCN7 (ENSEASG00005000520) #15	PTX4 (ENSEASG00005036837) #16	TELO2 (ENSEASG00005000596) #17	IFT140 (ENSEASG00005001221) #18	TMEM204 (ENSEASG00005001516) #19	CRAMP1 (ENSEASG00005001568) #20	JPT2 (ENSEASG00005025904) #21	ENSEASG00005038396 #22	ENSEASG00005034484 #22	ENSEASG00005001955 #22	NME3 (ENSEASG00005035536) #23	ENSEASG00005025961 #24	ENSEASG00005025437 #25	SPSB3 (ENSEASG00005026398) #26	NUBP2 (ENSEASG00005035230) #27	IGFALS (ENSEASG00005004586) #28	HAGH (ENSEASG00005004592) #29	FAHD1 (ENSEASG00005030060) #30	ENSEASG00005004600 #31	ENSEASG00005015561	HS3ST6 (ENSEASG00005004607) #32	RPL3L (ENSEASG00005009140) #34	ENSEASG00005033190
Donkey	MODERN SPECIES	5	ENSEASG00005000233	TSR3 (ENSEASG00005000250) #9	ENSEASG00005000258 #10	UNKL (ENSEASG00005000274) #11	ENSEASG00005034982 #12	PERCC1 (ENSEASG00005027506) #13	CCDC154 (ENSEASG00005000415) #14	CLCN7 (ENSEASG00005000520) #15	PTX4 (ENSEASG00005036837) #16	TELO2 (ENSEASG00005000596) #17	IFT140 (ENSEASG00005001221) #18	TMEM204 (ENSEASG00005001516) #19	CRAMP1 (ENSEASG00005001568) #20	JPT2 (ENSEASG00005025904) #21	ENSEASG00005038396 #22	ENSEASG00005034484 #22	ENSEASG00005001955 #22	NME3 (ENSEASG00005035536) #23	ENSEASG00005025961 #24	ENSEASG00005025437 #25	SPSB3 (ENSEASG00005026398) #26	NUBP2 (ENSEASG00005035230) #27	IGFALS (ENSEASG00005004586) #28	HAGH (ENSEASG00005004592) #29	FAHD1 (ENSEASG00005030060) #30	ENSEASG00005004600 #31	ENSEASG00005015561	HS3ST6 (ENSEASG00005004607) #32	RPL3L (ENSEASG00005009140) #34	ENSEASG00005033190	NDUFB10 (ENSEASG00005028164) #35
Horse	MODERN SPECIES	4	UBE2I (ENSECAG00000015831) #8	BAIAP3 (ENSECAG00000014225)	TSR3 (ENSECAG00000013501) #9	GNPTG (ENSECAG00000011390) #10	UNKL (ENSECAG00000010641) #11	ENSECAG00000054454 #12	PERCC1 (ENSECAG00000043201) #13	CCDC154 (ENSECAG00000009445) #14	CLCN7 (ENSECAG00000023236) #15	PTX4 (ENSECAG00000023063) #16	TELO2 (ENSECAG00000017413) #17	TMEM204 (ENSECAG00000015576) #19	IFT140 (ENSECAG00000009031) #18	CRAMP1 (ENSECAG00000023299) #20	JPT2 (ENSECAG00000026941) #21	MAPK8IP3 (ENSECAG00000016379) #22	NME3 (ENSECAG00000038477) #23	MRPS34 (ENSECAG00000016370) #24	EME2 (ENSECAG00000016045) #25	SPSB3 (ENSECAG00000013413) #26	NUBP2 (ENSECAG00000012545) #27	IGFALS (ENSECAG00000039211) #28	HAGH (ENSECAG00000005471) #29	FAHD1 (ENSECAG00000004353) #30	ENSECAG00000057961	MEIOB (ENSECAG00000001005) #31	HS3ST6 (ENSECAG00000000862) #32	RPL3L (ENSECAG00000020632) #34	NDUFB10 (ENSECAG00000020610) #35	RPS2 (ENSECAG00000009065)	RNF151 (ENSECAG00000008953)
Chiroptera	ANCESTRAL SPECIES	12	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Microchiroptera	ANCESTRAL SPECIES	17	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Greater horseshoe bat	MODERN SPECIES	47	ENSRFEG00010019105	UBE2I (ENSRFEG00010019169) #8	BAIAP3 (ENSRFEG00010019213)	TSR3 (ENSRFEG00010019277) #9	GNPTG (ENSRFEG00010019317) #10	UNKL (ENSRFEG00010019360) #11	UQCC4 (ENSRFEG00010019421) #12	CCDC154 (ENSRFEG00010019563) #14	CLCN7 (ENSRFEG00010019806) #15	PTX4 (ENSRFEG00010019992) #16	TELO2 (ENSRFEG00010020015) #17	IFT140 (ENSRFEG00010020088) #18	TMEM204 (ENSRFEG00010020163) #19	CRAMP1 (ENSRFEG00010020192) #20	JPT2 (ENSRFEG00010020239) #21	MAPK8IP3 (ENSRFEG00010020345) #22	MRPS34 (ENSRFEG00010020489) #24	EME2 (ENSRFEG00010020532) #25	SPSB3 (ENSRFEG00010020550) #26	NUBP2 (ENSRFEG00010020577) #27	IGFALS (ENSRFEG00010020626) #28	HAGH (ENSRFEG00010020660) #29	FAHD1 (ENSRFEG00010020709) #30	ENSRFEG00010020743 #31	HS3ST6 (ENSRFEG00010020816) #32	MSRB1 (ENSRFEG00010020839) #33	RPL3L (ENSRFEG00010020862) #34	NDUFB10 (ENSRFEG00010020889) #35	RPS2 (ENSRFEG00010020920)	RNF151 (ENSRFEG00010020958)	ENSRFEG00010020973
Microbat	MODERN SPECIES	1269								CCDC154 (ENSMLUG00000011607) #14	CLCN7 (ENSMLUG00000011575) #15	PTX4 (ENSMLUG00000011561) #16	TELO2 (ENSMLUG00000011527) #17	IFT140 (ENSMLUG00000009987) #18	TMEM204 (ENSMLUG00000010040) #19	CRAMP1 (ENSMLUG00000000709) #20	JPT2 (ENSMLUG00000000730) #21	MAPK8IP3 (ENSMLUG00000000736) #22	NME3 (ENSMLUG00000000754) #23	MRPS34 (ENSMLUG00000028772) #24	EME2 (ENSMLUG00000000758) #25	SPSB3 (ENSMLUG00000028814) #26	NUBP2 (ENSMLUG00000000768) #27	IGFALS (ENSMLUG00000000776) #28	HAGH (ENSMLUG00000000782) #29	FAHD1 (ENSMLUG00000000789) #30	ENSMLUG00000000791 #31	HS3ST6 (ENSMLUG00000011625) #32	MSRB1 (ENSMLUG00000011634) #33	RPL3L (ENSMLUG00000011638) #34	ENSMLUG00000011655 #35	ENSMLUG00000011660	RNF151 (ENSMLUG00000011679)
Megabat	MODERN SPECIES	3528		BAIAP3 (ENSPVAG00000016645)	TSR3 (ENSPVAG00000016647) #9	GNPTG (ENSPVAG00000016648) #10	ENSPVAG00000016649 #11	ENSPVAG00000016651 #12	CCDC154 (ENSPVAG00000016655) #14	CLCN7 (ENSPVAG00000016657) #15	PTX4 (ENSPVAG00000016660) #16	TELO2 (ENSPVAG00000016661) #17	IFT140 (ENSPVAG00000016662) #18	TMEM204 (ENSPVAG00000016663) #19	ENSPVAG00000016665	CRAMP1 (ENSPVAG00000016669) #20	JPT2 (ENSPVAG00000016673) #21	MAPK8IP3 (ENSPVAG00000016674) #22	NME3 (ENSPVAG00000016681) #23	MRPS34 (ENSPVAG00000016682) #24	EME2 (ENSPVAG00000016683) #25	SPSB3 (ENSPVAG00000016687) #26	NUBP2 (ENSPVAG00000016689) #27	HAGH (ENSPVAG00000016691) #29	ENSPVAG00000016695 #31	HS3ST6 (ENSPVAG00000016696) #32	ENSPVAG00000016697 #33	RPL3L (ENSPVAG00000016699) #34	NDUFB10 (ENSPVAG00000016701) #35	RPS2 (ENSPVAG00000016704)	RNF151 (ENSPVAG00000016706)	TBL3 (ENSPVAG00000016710) #37	NOXO1 (ENSPVAG00000016714)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a #22
Common shrew	MODERN SPECIES	2773																ENSSARG00000004604 #22
Atlantogenata	ANCESTRAL SPECIES	32	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a	ENSGT00530000063647.A.a
Afrotheria	ANCESTRAL SPECIES	30			ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a	ENSGT00530000063647.A.a
Afrotheria_a	ANCESTRAL SPECIES	29			ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a	ENSGT00530000063647.A.a
Elephant	MODERN SPECIES	442	ENSLAFG00000031398	UBE2I (ENSLAFG00000018318) #8	BAIAP3 (ENSLAFG00000007230)	TSR3 (ENSLAFG00000026304) #9	GNPTG (ENSLAFG00000010446) #10	UNKL (ENSLAFG00000018262) #11	UQCC4 (ENSLAFG00000026451) #12	ENSLAFG00000004047 #14	CLCN7 (ENSLAFG00000003618) #15	PTX4 (ENSLAFG00000012669) #16	TELO2 (ENSLAFG00000003284) #17	TMEM204 (ENSLAFG00000017196) #19	ENSLAFG00000003286 #18	CRAMP1 (ENSLAFG00000020604) #20	JPT2 (ENSLAFG00000016324) #21	MAPK8IP3 (ENSLAFG00000028194) #22	MRPS34 (ENSLAFG00000022475) #24	ENSLAFG00000023334	SPSB3 (ENSLAFG00000028630) #26	HAGH (ENSLAFG00000032140) #29	FAHD1 (ENSLAFG00000008141) #30	ENSLAFG00000008142 #31	HS3ST6 (ENSLAFG00000001051) #32	ENSLAFG00000016584 #18	RPL3L (ENSLAFG00000016587) #34	NDUFB10 (ENSLAFG00000021643) #35	ENSLAFG00000004696	RNF151 (ENSLAFG00000030860)	TBL3 (ENSLAFG00000004699) #37	ENSLAFG00000004707	GFER (ENSLAFG00000028685)
Hyrax	MODERN SPECIES	2904																MAPK8IP3 (ENSPCAG00000006898) #22	NME3 (ENSPCAG00000007031) #23	MRPS34 (ENSPCAG00000007060) #24	ENSPCAG00000007088 #25	SPSB3 (ENSPCAG00000007138) #26	NUBP2 (ENSPCAG00000007200) #27	IGFALS (ENSPCAG00000007244) #28
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a	ENSGT00530000063647.A.a
Opossum	MODERN SPECIES	5	UBE2I (ENSMODG00000016199) #8	BAIAP3 (ENSMODG00000016195)	TSR3 (ENSMODG00000016193) #9	GNPTG (ENSMODG00000016192) #10	UNKL (ENSMODG00000016188) #11	ENSMODG00000016185 #12	ENSMODG00000016183 #14	CLCN7 (ENSMODG00000016179) #15	ENSMODG00000016175 #16	ENSMODG00000016174	TELO2 (ENSMODG00000016164) #17	IFT140 (ENSMODG00000016160) #18	TMEM204 (ENSMODG00000016163) #19	CRAMP1 (ENSMODG00000016154) #20	JPT2 (ENSMODG00000016153) #21	MAPK8IP3 (ENSMODG00000016149) #22	ENSMODG00000016134 #23	SPSB3 (ENSMODG00000016123) #26	NUBP2 (ENSMODG00000016119) #27	IGFALS (ENSMODG00000016108) #28	ENSMODG00000016115 #29	FAHD1 (ENSMODG00000016110) #30	ENSMODG00000016106 #31	HS3ST6 (ENSMODG00000016042) #32	RPL3L (ENSMODG00000016100) #34	NDUFB10 (ENSMODG00000016095) #35	ENSMODG00000016077	RNF151 (ENSMODG00000016093)	TBL3 (ENSMODG00000016091) #37	ENSMODG00000049873	ENSMODG00000016066
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00940000158868	ENSGT00550000075088.a.a.rb.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a	ENSGT00530000063647.A.a
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00940000158868	ENSGT00550000075088.a.a.rb.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a	ENSGT00530000063647.A.a
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00940000162162.b.a.a.b.a	ENSGT00550000075088.a.a.rb.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a.c	ENSGT00530000063647.A.a
Common wonbat	MODERN SPECIES	1009	ENSVURG00010011524	ENSVURG00010011474	UBE2I (ENSVURG00010011439) #8	BAIAP3 (ENSVURG00010011383)	TSR3 (ENSVURG00010011369) #9	GNPTG (ENSVURG00010011357) #10	UNKL (ENSVURG00010011333) #11	ENSVURG00010011316 #12	ENSVURG00010011295	CLCN7 (ENSVURG00010011261) #15	PTX4 (ENSVURG00010011243) #16	TELO2 (ENSVURG00010011232) #17	TMEM204 (ENSVURG00010011226) #19	IFT140 (ENSVURG00010011205) #18	CRAMP1 (ENSVURG00010011179) #20	MAPK8IP3 (ENSVURG00010011078) #22	NME3 (ENSVURG00010011044) #23	MRPS34 (ENSVURG00010011039) #24	SPSB3 (ENSVURG00010011033) #26	NUBP2 (ENSVURG00010011022) #27	IGFALS (ENSVURG00010011011) #28	FAHD1 (ENSVURG00010011002) #30	HAGH (ENSVURG00010010956) #29	ENSVURG00010010911 #31	ENSVURG00010010904 #32	MSRB1 (ENSVURG00010010897) #33	RPL3L (ENSVURG00010010888) #34	NDUFB10 (ENSVURG00010010878) #35	ENSVURG00010010866	RNF151 (ENSVURG00010010857)	TBL3 (ENSVURG00010010842) #37
koala	MODERN SPECIES	116	ENSPCIG00000015617	UBE2I (ENSPCIG00000015620) #8	BAIAP3 (ENSPCIG00000015622)	TSR3 (ENSPCIG00000015629) #9	GNPTG (ENSPCIG00000015631) #10	UNKL (ENSPCIG00000015633) #11	ENSPCIG00000015640 #12	ENSPCIG00000031234 #14	CLCN7 (ENSPCIG00000015643) #15	PTX4 (ENSPCIG00000017260) #16	TELO2 (ENSPCIG00000017263) #17	ENSPCIG00000017270 #18	TMEM204 (ENSPCIG00000017273) #19	CRAMP1 (ENSPCIG00000017274) #20	JPT2 (ENSPCIG00000017275) #21	MAPK8IP3 (ENSPCIG00000017276) #22	NME3 (ENSPCIG00000017277) #23	MRPS34 (ENSPCIG00000017278) #24	SPSB3 (ENSPCIG00000017279) #26	NUBP2 (ENSPCIG00000017280) #27	IGFALS (ENSPCIG00000017281) #28	HAGH (ENSPCIG00000017282) #29	FAHD1 (ENSPCIG00000017360) #30	ENSPCIG00000017363 #31	HS3ST6 (ENSPCIG00000017369) #32	MSRB1 (ENSPCIG00000030855) #33	RPL3L (ENSPCIG00000021801) #34	NDUFB10 (ENSPCIG00000021802) #35	ENSPCIG00000021804	RNF151 (ENSPCIG00000021808)	TBL3 (ENSPCIG00000021811) #37
Wallaby	MODERN SPECIES	4648																MAPK8IP3 (ENSMEUG00000012149) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000032100	ENSSHAG00000007034 #8	BAIAP3 (ENSSHAG00000007915)	TSR3 (ENSSHAG00000029432) #9	UNKL (ENSSHAG00000008411) #11	GNPTG (ENSSHAG00000008285) #10	PERCC1 (ENSSHAG00000009782) #13	ENSSHAG00000009800 #14	CLCN7 (ENSSHAG00000009987) #15	ENSSHAG00000023530	TELO2 (ENSSHAG00000010585) #17	IFT140 (ENSSHAG00000010791) #18	TMEM204 (ENSSHAG00000010939) #19	CRAMP1 (ENSSHAG00000012114) #20	JPT2 (ENSSHAG00000012700) #21	MAPK8IP3 (ENSSHAG00000012766) #22	NME3 (ENSSHAG00000023742) #23	MRPS34 (ENSSHAG00000022861) #24	SPSB3 (ENSSHAG00000013377) #26	NUBP2 (ENSSHAG00000013485) #27	IGFALS (ENSSHAG00000013535) #28	HAGH (ENSSHAG00000023063) #29	FAHD1 (ENSSHAG00000013683) #30	ENSSHAG00000013736 #31	HS3ST6 (ENSSHAG00000009243) #32	MSRB1 (ENSSHAG00000029584) #33	RPL3L (ENSSHAG00000021316) #34	NDUFB10 (ENSSHAG00000015191) #35	RPS2 (ENSSHAG00000015213)	RNF151 (ENSSHAG00000015257)	TBL3 (ENSSHAG00000015266) #37
Platypus	MODERN SPECIES	13	POLR3K (ENSOANG00000039734)	ENSOANG00000040472	PDPK1 (ENSOANG00000002330)	KCTD5 (ENSOANG00000040492)	UBE2I (ENSOANG00000038123) #8	BAIAP3 (ENSOANG00000020781)	ENSOANG00000013594 #9	ENSOANG00000048960	ENSOANG00000038628 #13	CLCN7 (ENSOANG00000002751) #15	TELO2 (ENSOANG00000001243) #17	IFT140 (ENSOANG00000001815) #18	TMEM204 (ENSOANG00000013655) #19	CRAMP1 (ENSOANG00000002915) #20	JPT2 (ENSOANG00000044642) #21	MAPK8IP3 (ENSOANG00000011871) #22	ENSOANG00000044345 #23	MRPS34 (ENSOANG00000050507) #24	SPSB3 (ENSOANG00000015654) #26	NUBP2 (ENSOANG00000046631) #27	IGFALS (ENSOANG00000028313) #28	HAGH (ENSOANG00000002919) #29	ENSOANG00000002921 #31	HS3ST6 (ENSOANG00000002922) #32	MSRB1 (ENSOANG00000001860) #33	RPL3L (ENSOANG00000001892) #34	RPS2 (ENSOANG00000039911)	ENSOANG00000040650 #35	TBL3 (ENSOANG00000009819) #37	ENSOANG00000050062	ENSOANG00000049373
Sauria	ANCESTRAL SPECIES	12	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT01010000222629	ENSGT00930000151045
Lepidosauria	ANCESTRAL SPECIES	77	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28
Episquamata	ANCESTRAL SPECIES	8	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT01030000234862	ENSGT00940000162720.a.a
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00940000162720.a.a	ENSGT00390000001488
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488	ENSGT00390000016730
Elapidae_a	ANCESTRAL SPECIES	21	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.l #22	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488	ENSGT00390000016730
Acanthophiinae	ANCESTRAL SPECIES	28	ENSGT00960000188184	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a.o	ENSGT00940000153882.a.b.b.a.p	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488	ENSGT00390000016730
Mainland tiger snake	MODERN SPECIES	176				TBC1D24 (ENSNSUG00000001147)	ATP6V0C (ENSNSUG00000001151)	AMDHD2 (ENSNSUG00000001153)	ENSNSUG00000001156	RNPS1 (ENSNSUG00000001161)	TELO2 (ENSNSUG00000001164) #17	IFT140 (ENSNSUG00000001169) #18	TMEM204 (ENSNSUG00000001170) #19	ENSNSUG00000001173 #18	CRAMP1 (ENSNSUG00000001174) #20	JPT2 (ENSNSUG00000001178) #21	ENSNSUG00000001180	MAPK8IP3 (ENSNSUG00000001197) #22	NME3 (ENSNSUG00000001215) #23	ERCC4 (ENSNSUG00000001217)	ENSNSUG00000001231	ENSNSUG00000001245	IGFALS (ENSNSUG00000001248) #28	NUBP2 (ENSNSUG00000001249) #27	SPSB3 (ENSNSUG00000001251) #26	EME2 (ENSNSUG00000001254) #25	MRPS34 (ENSNSUG00000001257) #24	SHISA9 (ENSNSUG00000001260)	ENSNSUG00000001262	SNX29 (ENSNSUG00000001265)	GSPT1 (ENSNSUG00000001336)	ENSNSUG00000003122	TMC5 (ENSNSUG00000003130)
Eastern brown snake	MODERN SPECIES	24	ENSPTXG00000004316	ENSPTXG00000004319	ENSPTXG00000004321	ENSPTXG00000004323	TBC1D24 (ENSPTXG00000004324)	ATP6V0C (ENSPTXG00000004325)	AMDHD2 (ENSPTXG00000004326)	ENSPTXG00000004328	RNPS1 (ENSPTXG00000004330)	TELO2 (ENSPTXG00000004333) #17	IFT140 (ENSPTXG00000004335) #18	TMEM204 (ENSPTXG00000004353) #19	CRAMP1 (ENSPTXG00000004356) #20	JPT2 (ENSPTXG00000004357) #21	ENSPTXG00000004358	ENSPTXG00000004362 #22	NME3 (ENSPTXG00000004421) #23	ERCC4 (ENSPTXG00000004424)	MRTFB (ENSPTXG00000004426)	IGFALS (ENSPTXG00000004428) #28	NUBP2 (ENSPTXG00000004430) #27	SPSB3 (ENSPTXG00000004433) #26	MRPS34 (ENSPTXG00000004435) #24	SHISA9 (ENSPTXG00000004438)	ENSPTXG00000004439	SNX29 (ENSPTXG00000004440)	GSPT1 (ENSPTXG00000004443)	RSL1D1 (ENSPTXG00000004445)	RRN3 (ENSPTXG00000004447)	NTAN1 (ENSPTXG00000004461)	ENSPTXG00000004463
Indian cobra	MODERN SPECIES	15	ENSNNAG00000010511	ENSNNAG00000010530	ENSNNAG00000010560	TBC1D24 (ENSNNAG00000010569)	ATP6V0C (ENSNNAG00000010675)	AMDHD2 (ENSNNAG00000010690)	ENSNNAG00000010703	ENSNNAG00000010733	RNPS1 (ENSNNAG00000010787)	TELO2 (ENSNNAG00000010841) #17	IFT140 (ENSNNAG00000010928) #18	TMEM204 (ENSNNAG00000011111) #19	CRAMP1 (ENSNNAG00000011152) #20	JPT2 (ENSNNAG00000011619) #21	ENSNNAG00000011647	MAPK8IP3 (ENSNNAG00000011680) #22	NME3 (ENSNNAG00000011850) #23	ENSNNAG00000011861	ERCC4 (ENSNNAG00000011878)	MRTFB (ENSNNAG00000012023)	IGFALS (ENSNNAG00000012067) #28	NUBP2 (ENSNNAG00000012080) #27	SPSB3 (ENSNNAG00000012100) #26	EME2 (ENSNNAG00000012123) #25	MRPS34 (ENSNNAG00000012152) #24	ENSNNAG00000012174	SHISA9 (ENSNNAG00000012209)	ENSNNAG00000012224	SNX29 (ENSNNAG00000012251)	GSPT1 (ENSNNAG00000012371)	RSL1D1 (ENSNNAG00000012403)
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.k.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.k.b #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.k.b #22
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	802																ENSPTXG00000016922 #22
Eastern brown snake	MODERN SPECIES	801																ENSPTXG00000016919 #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.l #22
Elapidae_a	ANCESTRAL SPECIES	21	ENSGT00960000188184	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.l #22	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488
Blue-lipped sea krait	MODERN SPECIES	3332													CRAMP1 (ENSLLTG00000007316) #20	JPT2 (ENSLLTG00000007294) #21	ENSLLTG00000007226	MAPK8IP3 (ENSLLTG00000007027) #22	NME3 (ENSLLTG00000006995) #23	ERCC4 (ENSLLTG00000006975)	MRTFB (ENSLLTG00000006882)	IGFALS (ENSLLTG00000006861) #28	NUBP2 (ENSLLTG00000006828) #27	SPSB3 (ENSLLTG00000006770) #26	EME2 (ENSLLTG00000006705) #25	MRPS34 (ENSLLTG00000006676) #24
Lizard	MODERN SPECIES	1255									ENSACAG00000004088	TELO2 (ENSACAG00000014677) #17	IFT140 (ENSACAG00000014726) #18	TMEM204 (ENSACAG00000014846) #19	ENSACAG00000039350 #18	CRAMP1 (ENSACAG00000003178) #20	JPT2 (ENSACAG00000003214) #21	MAPK8IP3 (ENSACAG00000003246) #22	NME3 (ENSACAG00000041297) #23	ENSACAG00000003574	ENSACAG00000003638	ENSACAG00000003699 #28
Laterata	ANCESTRAL SPECIES	23	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b.g	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT01030000234862	ENSGT00940000162720.a.a
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000015006	ENSPMRG00000015010	NTN3 (ENSPMRG00000015014)	TBC1D24 (ENSPMRG00000015023)	ATP6V0C (ENSPMRG00000015036)	AMDHD2 (ENSPMRG00000015040)	ENSPMRG00000015048	ENSPMRG00000015055	RNPS1 (ENSPMRG00000015064)	TELO2 (ENSPMRG00000015079) #17	IFT140 (ENSPMRG00000015105) #18	TMEM204 (ENSPMRG00000015121) #19	CRAMP1 (ENSPMRG00000015163) #20	JPT2 (ENSPMRG00000015358) #21	ENSPMRG00000015373	MAPK8IP3 (ENSPMRG00000015527) #22	ENSPMRG00000016617	NME3 (ENSPMRG00000016619) #23	ERCC4 (ENSPMRG00000016623)	ENSPMRG00000016629	ENSPMRG00000016631	ENSPMRG00000016634	MRTFB (ENSPMRG00000016639)	IGFALS (ENSPMRG00000016645) #28	ENSPMRG00000016651 #27	SPSB3 (ENSPMRG00000016657) #26	EME2 (ENSPMRG00000016661) #25	ENSPMRG00000016664	MRPS34 (ENSPMRG00000016667) #24	ENSPMRG00000016670	SHISA9 (ENSPMRG00000016675)
Argentine black and white tegu	MODERN SPECIES	50	ENSSMRG00000016713	ENSSMRG00000016714	NTN3 (ENSSMRG00000016718)	TBC1D24 (ENSSMRG00000016720)	ATP6V0C (ENSSMRG00000016724)	AMDHD2 (ENSSMRG00000016727)	ENSSMRG00000016733	ENSSMRG00000016735	RNPS1 (ENSSMRG00000016741)	TELO2 (ENSSMRG00000016744) #17	IFT140 (ENSSMRG00000016747) #18	TMEM204 (ENSSMRG00000016754) #19	CRAMP1 (ENSSMRG00000016756) #20	JPT2 (ENSSMRG00000016763) #21	ENSSMRG00000016765	MAPK8IP3 (ENSSMRG00000016766) #22	GNPTG (ENSSMRG00000016775) #10	TSR3 (ENSSMRG00000016777) #9	UBE2I (ENSSMRG00000016779) #8	KCTD5 (ENSSMRG00000016781)	PDPK1 (ENSSMRG00000016783)	KDM8 (ENSSMRG00000016784)	NSMCE1 (ENSSMRG00000016785)	ENSSMRG00000016787	IL21R (ENSSMRG00000016788)	HS3ST4 (ENSSMRG00000016793)	HS3ST2 (ENSSMRG00000016795)	USP31 (ENSSMRG00000016799)	SCNN1G (ENSSMRG00000016803)	SCNN1B (ENSSMRG00000016804)	COG7 (ENSSMRG00000016808)
tuatara	MODERN SPECIES	1175	TBC1D24 (ENSSPUG00000016696)	ATP6V0C (ENSSPUG00000016692)	AMDHD2 (ENSSPUG00000016652)	ENSSPUG00000016639	ENSSPUG00000016626	ENSSPUG00000016611	ENSSPUG00000016600	RNPS1 (ENSSPUG00000016588)	ENSSPUG00000016573 #17	ENSSPUG00000016517 #17	TMEM204 (ENSSPUG00000016481) #19	IFT140 (ENSSPUG00000016458) #18	CRAMP1 (ENSSPUG00000016386) #20	JPT2 (ENSSPUG00000016353) #21	ENSSPUG00000016324	MAPK8IP3 (ENSSPUG00000014659) #22	NME3 (ENSSPUG00000014344) #23	MRPS34 (ENSSPUG00000014340) #24	EME2 (ENSSPUG00000014330) #25	SPSB3 (ENSSPUG00000014318) #26	NUBP2 (ENSSPUG00000014309) #27
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT01010000222629	ENSGT00930000151045
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00940000158575	ENSGT00390000017366	ENSGT00940000153246.a.a.a	ENSGT00940000160967	ENSGT00940000162846	ENSGT00510000048454
Emydidae	ANCESTRAL SPECIES	38	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00940000158575	ENSGT00390000017366	ENSGT00940000153246.a.a.a	ENSGT00940000160967	ENSGT00940000162846	ENSGT00510000048454
Three-toed box turtle	MODERN SPECIES	27	ENSTMTG00000002613	ENSTMTG00000002619	NTN3 (ENSTMTG00000002631)	TBC1D24 (ENSTMTG00000002655)	ATP6V0C (ENSTMTG00000002661)	AMDHD2 (ENSTMTG00000002663)	ENSTMTG00000002669	ENSTMTG00000002673	RNPS1 (ENSTMTG00000002680)	TELO2 (ENSTMTG00000002686) #17	IFT140 (ENSTMTG00000002716) #18	TMEM204 (ENSTMTG00000002748) #19	CRAMP1 (ENSTMTG00000002756) #20	JPT2 (ENSTMTG00000002778) #21	ENSTMTG00000002786	MAPK8IP3 (ENSTMTG00000002806) #22	SPSB3 (ENSTMTG00000002888) #26	NME3 (ENSTMTG00000002896) #23	MRPS34 (ENSTMTG00000002908) #24	NUBP2 (ENSTMTG00000002910) #27	IGFALS (ENSTMTG00000002917) #28	ANTKMT (ENSTMTG00000002922)	METRN (ENSTMTG00000002928)	FBXL16 (ENSTMTG00000002936)	CYP11A1 (ENSTMTG00000002950)	CCDC33 (ENSTMTG00000002982)	STRA6 (ENSTMTG00000003033)	ENSTMTG00000003144	ISLR2 (ENSTMTG00000003169)	PML (ENSTMTG00000003177)	STOML1 (ENSTMTG00000003203)
painted turtle	MODERN SPECIES	878	RGS11 (ENSCPBG00000005138)	FAM234A (ENSCPBG00000005124)	LUC7L (ENSCPBG00000005122)	ENSCPBG00000000632 #15	ENSCPBG00000000406	ENSCPBG00000000339	ENSCPBG00000000249	RNPS1 (ENSCPBG00000000214)	TELO2 (ENSCPBG00000000179) #17	TMEM204 (ENSCPBG00000000159) #19	ENSCPBG00000000145	IFT140 (ENSCPBG00000023388) #18	CRAMP1 (ENSCPBG00000023356) #20	JPT2 (ENSCPBG00000023354) #21	ENSCPBG00000023351	MAPK8IP3 (ENSCPBG00000023332) #22	NME3 (ENSCPBG00000023273) #23	MRPS34 (ENSCPBG00000023270) #24	SPSB3 (ENSCPBG00000023269) #26	NUBP2 (ENSCPBG00000023268) #27	IGFALS (ENSCPBG00000023267) #28
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00960000188184	ENSGT00390000011149	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00940000158575	ENSGT00390000017366	ENSGT00940000153246.a.a.a	ENSGT00940000160967	ENSGT00940000162846	ENSGT00510000048454	ENSGT01030000234614.C
Goode s thornscrub tortoise	MODERN SPECIES	150	ENSGEVG00005020573	NTN3 (ENSGEVG00005020542)	TBC1D24 (ENSGEVG00005020527)	ATP6V0C (ENSGEVG00005020520)	AMDHD2 (ENSGEVG00005020506)	ENSGEVG00005020500	ENSGEVG00005020496	ENSGEVG00005020489	RNPS1 (ENSGEVG00005020485)	TELO2 (ENSGEVG00005020464) #17	IFT140 (ENSGEVG00005020453) #18	TMEM204 (ENSGEVG00005020450) #19	ENSGEVG00005020445 #18	CRAMP1 (ENSGEVG00005020435) #20	JPT2 (ENSGEVG00005020431) #21	MAPK8IP3 (ENSGEVG00005020417) #22	NME3 (ENSGEVG00005020412) #23	MRPS34 (ENSGEVG00005020405) #24	SPSB3 (ENSGEVG00005020402) #26	NUBP2 (ENSGEVG00005020396) #27	IGFALS (ENSGEVG00005020390) #28	ANTKMT (ENSGEVG00005020386)	METRN (ENSGEVG00005020381)	FBXL16 (ENSGEVG00005020374)	CYP11A1 (ENSGEVG00005020330)	CCDC33 (ENSGEVG00005020305)	STRA6 (ENSGEVG00005020279)	ENSGEVG00005020269	ENSGEVG00005020263	PML (ENSGEVG00005020254)	STOML1 (ENSGEVG00005020246)
Abingdon island giant tortoise	MODERN SPECIES	809																MAPK8IP3 (ENSCABG00000016476) #22	NME3 (ENSCABG00000016475) #23	MRPS34 (ENSCABG00000016473) #24
Chinese turtle	MODERN SPECIES	1603										TELO2 (ENSPSIG00000007202) #17	IFT140 (ENSPSIG00000007362) #18	TMEM204 (ENSPSIG00000003226) #19	CRAMP1 (ENSPSIG00000003236) #20	JPT2 (ENSPSIG00000003315) #21	ENSPSIG00000003332	MAPK8IP3 (ENSPSIG00000003350) #22	NME3 (ENSPSIG00000003462) #23	MRPS34 (ENSPSIG00000003471) #24	EME2 (ENSPSIG00000003484) #25	SPSB3 (ENSPSIG00000003496) #26	NUBP2 (ENSPSIG00000003507) #27	IGFALS (ENSPSIG00000001836) #28	CCDC78 (ENSPSIG00000003517)	ANTKMT (ENSPSIG00000003522)	METRN (ENSPSIG00000003527)	ENSPSIG00000001839	FBXL16 (ENSPSIG00000003546)
Archosauria	ANCESTRAL SPECIES	8	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT00930000151045	ENSGT01010000222629
Aves	ANCESTRAL SPECIES	11	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b
Neognathae	ANCESTRAL SPECIES	10	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT00960000188470
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Great tit	MODERN SPECIES	5	ENSPMJG00000008261	ENSPMJG00000008260	ENSPMJG00000008254	ENSPMJG00000008237	ENSPMJG00000008236	NTN3 (ENSPMJG00000008235)	TBC1D24 (ENSPMJG00000008229)	ATP6V0C (ENSPMJG00000008221)	AMDHD2 (ENSPMJG00000008220)	ENSPMJG00000008219	RNPS1 (ENSPMJG00000008216)	TELO2 (ENSPMJG00000008213) #17	TMEM204 (ENSPMJG00000008210) #19	IFT140 (ENSPMJG00000008203) #18	CRAMP1 (ENSPMJG00000008175) #20	MAPK8IP3 (ENSPMJG00000008136) #22	MRPS34 (ENSPMJG00000008135) #24	GLYR1 (ENSPMJG00000008130)	ROGDI (ENSPMJG00000008129)
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Flycatcher	MODERN SPECIES	5	ENSFALG00000028375	ENSFALG00000004787	ENSFALG00000025136	ENSFALG00000004795	ENSFALG00000004810	NTN3 (ENSFALG00000004832)	ENSFALG00000004844	AMDHD2 (ENSFALG00000004861)	ENSFALG00000004864	ENSFALG00000004868	ENSFALG00000004882 #17	TMEM204 (ENSFALG00000027604) #19	IFT140 (ENSFALG00000004934) #18	CRAMP1 (ENSFALG00000004993) #20	JPT2 (ENSFALG00000028396) #21	MAPK8IP3 (ENSFALG00000005043) #22	ENSFALG00000005108	ENSFALG00000005124
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Common canary	MODERN SPECIES	96									ENSSCAG00000002678	RNPS1 (ENSSCAG00000002683)	TELO2 (ENSSCAG00000002690) #17	IFT140 (ENSSCAG00000002717) #18	TMEM204 (ENSSCAG00000002765) #19	CRAMP1 (ENSSCAG00000002771) #20	JPT2 (ENSSCAG00000002787) #21	MAPK8IP3 (ENSSCAG00000002813) #22	MRPS34 (ENSSCAG00000002847) #24	GLYR1 (ENSSCAG00000002855)	ROGDI (ENSSCAG00000002865)	ENSSCAG00000002872
Zebra finch	MODERN SPECIES	5	ABCA3 (ENSTGUG00000003346)	ENSTGUG00000003328	CCNF (ENSTGUG00000003290)	ENSTGUG00000025542	ENSTGUG00000003287	ENSTGUG00000003275	NTN3 (ENSTGUG00000003265)	TBC1D24 (ENSTGUG00000003258)	ATP6V0C (ENSTGUG00000003256)	AMDHD2 (ENSTGUG00000003247)	RNPS1 (ENSTGUG00000003237)	TMEM204 (ENSTGUG00000003224) #17	IFT140 (ENSTGUG00000003195) #18	CRAMP1 (ENSTGUG00000003176) #20	JPT2 (ENSTGUG00000019130) #21	MAPK8IP3 (ENSTGUG00000003150) #22	MRPS34 (ENSTGUG00000003148) #24	GLYR1 (ENSTGUG00000003134)
Medium ground finch	MODERN SPECIES	86	ENSGFOG00000009381	ENSGFOG00000009372	ENSGFOG00000009347	ENSGFOG00000009342	ENSGFOG00000009338	TBC1D24 (ENSGFOG00000009326)	ATP6V0C (ENSGFOG00000009319)	AMDHD2 (ENSGFOG00000009304)	ENSGFOG00000009299	RNPS1 (ENSGFOG00000009288)	TELO2 (ENSGFOG00000009235) #17	TMEM204 (ENSGFOG00000014703) #19	IFT140 (ENSGFOG00000014700) #18	CRAMP1 (ENSGFOG00000014696) #20	JPT2 (ENSGFOG00000014694) #21	MAPK8IP3 (ENSGFOG00000014687) #22	MRPS34 (ENSGFOG00000014684) #24	ROGDI (ENSGFOG00000014682)
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT00960000188470	ENSGT01050000244841.A.b.a.b.b
Kakapo	MODERN SPECIES	21	ENSSHBG00005003019	ENSSHBG00005002999	ENSSHBG00005002981	ENSSHBG00005002966	ENSSHBG00005002948	TBC1D24 (ENSSHBG00005002922)	ATP6V0C (ENSSHBG00005002891)	AMDHD2 (ENSSHBG00005002855)	ENSSHBG00005002834	RNPS1 (ENSSHBG00005002789)	TELO2 (ENSSHBG00005002465) #17	TMEM204 (ENSSHBG00005002323) #19	IFT140 (ENSSHBG00005002216) #18	CRAMP1 (ENSSHBG00005001854) #20	JPT2 (ENSSHBG00005001530) #21	MAPK8IP3 (ENSSHBG00005001493) #22	MRPS34 (ENSSHBG00005001465) #24	GLYR1 (ENSSHBG00005000522)	ROGDI (ENSSHBG00005016437)	ENSSHBG00005016435	ENSSHBG00005016434	RAG1 (ENSSHBG00005016430)	ENSSHBG00005016423	ENSSHBG00005016420	LRRC4C (ENSSHBG00005016412)	ANO1 (ENSSHBG00005016323)	FGF3 (ENSSHBG00005016296)	FGF4 (ENSSHBG00005016290)	FGF19 (ENSSHBG00005016282)	LTO1 (ENSSHBG00005016276)	CCND1 (ENSSHBG00005016264)
Golden eagle	MODERN SPECIES	17	ENSACCG00020012557	ENSACCG00020012582	NTN3 (ENSACCG00020012598)	TBC1D24 (ENSACCG00020012625)	ATP6V0C (ENSACCG00020012647)	AMDHD2 (ENSACCG00020012667)	ENSACCG00020012693	ENSACCG00020012723	RNPS1 (ENSACCG00020012750)	TELO2 (ENSACCG00020012870) #17	IFT140 (ENSACCG00020012976) #18	TMEM204 (ENSACCG00020013019) #19	CRAMP1 (ENSACCG00020013142) #20	JPT2 (ENSACCG00020013182) #21	ENSACCG00020013199	MAPK8IP3 (ENSACCG00020013368) #22	MRPS34 (ENSACCG00020013505) #24	GLYR1 (ENSACCG00020013541)	ROGDI (ENSACCG00020013589)	ENSACCG00020013617	ENSACCG00020013633
Galloanserae	ANCESTRAL SPECIES	80																ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00390000006698 #17	ENSGT00390000017704	ENSGT00730000111029	ENSGT00530000066748	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00390000011149	ENSGT00960000188184	ENSGT00810000125541	ENSGT00940000158111	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b	ENSGT00940000157930.f.b.a	ENSGT00940000161148	ENSGT00940000160939	ENSGT00940000159473	ENSGT00950000182961.b	ENSGT00390000007907	ENSGT01070000257283	ENSGT00500000044955	ENSGT00390000011343	ENSGT00390000002365.o	ENSGT00940000157930.f.a
Japanese quail	MODERN SPECIES	5	TMEM204 (ENSCJPG00005018338) #19	TELO2 (ENSCJPG00005018346) #17	ENSCJPG00005018447	RNPS1 (ENSCJPG00005018448)	ENSCJPG00005018449	AMDHD2 (ENSCJPG00005018450)	ATP6V0C (ENSCJPG00005018451)	TBC1D24 (ENSCJPG00005018452)	NTN3 (ENSCJPG00005018454)	ENSCJPG00005018455	ENSCJPG00005018456	ENSCJPG00005018457	ENSCJPG00005018458	CCNF (ENSCJPG00005018459)	ENSCJPG00005018460	MAPK8IP3 (ENSCJPG00005018461) #22	MRPS34 (ENSCJPG00005018493) #24	GLYR1 (ENSCJPG00005018494)	ROGDI (ENSCJPG00005018495)	ENSCJPG00005018496	ENSCJPG00005018497	ACSM5 (ENSCJPG00005018499)	PDILT (ENSCJPG00005018501)	GPR139 (ENSCJPG00005018502)	GPRC5B (ENSCJPG00005018503)	ENSCJPG00005018505	VPS35L (ENSCJPG00005018507)	THUMPD1 (ENSCJPG00005018770)	ACSM3 (ENSCJPG00005018771)	ENSCJPG00005018772	ENSCJPG00005018773
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00940000153417.A #18	ENSGT00390000006698 #17	ENSGT00730000111029	ENSGT00530000066748	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00390000011149	ENSGT00960000188184	ENSGT00810000125541	ENSGT00940000158111	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b	ENSGT00940000157930.f.b.a	ENSGT00940000161148	ENSGT00940000160939	ENSGT00940000159473	ENSGT00950000182961.b	ENSGT00390000007907	ENSGT01070000257283	ENSGT00500000044955	ENSGT00390000011343	ENSGT00390000002365.o	ENSGT00940000157930.f.a
Turkey	DUPLICATION
Turkey	MODERN SPECIES	7	TBC1D24 (ENSMGAG00000009991)	ATP6V0C (ENSMGAG00000019830)	AMDHD2 (ENSMGAG00000010012)	ENSMGAG00000010019	ENSMGAG00000010029	ENSMGAG00000010042	ENSMGAG00000017654	TELO2 (ENSMGAG00000010047) #17	IFT140 (ENSMGAG00000010061) #18	TMEM204 (ENSMGAG00000010086) #19	CRAMP1 (ENSMGAG00000010243) #20	JPT2 (ENSMGAG00000010245) #21	ENSMGAG00000009945	ENSMGAG00000010151	ENSMGAG00000022690 #22	ENSMGAG00000010156 #22	ENSMGAG00000010241 #24	ENSMGAG00000010221	ENSMGAG00000010244	ENSMGAG00000010252	ENSMGAG00000016838	ACSM5 (ENSMGAG00000010256)	ENSMGAG00000022371	ENSMGAG00000021402	ENSMGAG00000021101	GPR139 (ENSMGAG00000015619)	ACSM3 (ENSMGAG00000010342)	ENSMGAG00000020747	ENSMGAG00000010365	REXO5 (ENSMGAG00000010369)	DCUN1D3 (ENSMGAG00000010392)
Turkey	MODERN SPECIES	7	NTN3 (ENSMGAG00000009973)	TBC1D24 (ENSMGAG00000009991)	ATP6V0C (ENSMGAG00000019830)	AMDHD2 (ENSMGAG00000010012)	ENSMGAG00000010019	ENSMGAG00000010029	ENSMGAG00000010042	ENSMGAG00000017654	TELO2 (ENSMGAG00000010047) #17	IFT140 (ENSMGAG00000010061) #18	TMEM204 (ENSMGAG00000010086) #19	CRAMP1 (ENSMGAG00000010243) #20	JPT2 (ENSMGAG00000010245) #21	ENSMGAG00000009945	ENSMGAG00000010151	ENSMGAG00000022690 #22	ENSMGAG00000010156 #22	ENSMGAG00000010241 #24	ENSMGAG00000010221	ENSMGAG00000010244	ENSMGAG00000010252	ENSMGAG00000016838	ACSM5 (ENSMGAG00000010256)	ENSMGAG00000022371	ENSMGAG00000021402	ENSMGAG00000021101	GPR139 (ENSMGAG00000015619)	ACSM3 (ENSMGAG00000010342)	ENSMGAG00000020747	ENSMGAG00000010365	REXO5 (ENSMGAG00000010369)
Chicken	MODERN SPECIES	5	NTN3 (ENSGALG00010017519)	ENSGALG00010017523	NOG2 (ENSGALG00010019318)	ENSGALG00010017565	ENSGALG00010017585	ENSGALG00010017590	CCNF (ENSGALG00010017595)	ENSGALG00010017601	ENSGALG00010017607	ENSGALG00010017611	ENSGALG00010017614	ENSGALG00010017617	ENSGALG00010017623	ENSGALG00010017630	ENSGALG00010017637	MAPK8IP3 (ENSGALG00010016474) #22	MRPS34 (ENSGALG00010016527) #24	GLYR1 (ENSGALG00010019586)	ROGDI (ENSGALG00010016559)	MCHR2 (ENSGALG00010016380)	ENSGALG00010016390	ACSM5 (ENSGALG00010016399)	PDILT (ENSGALG00010016406)	GPR139 (ENSGALG00010016434)	GPRC5B (ENSGALG00010017641)	ENSGALG00010017649	ENSGALG00010017653	ENSGALG00010017655	VPS35L (ENSGALG00010017700)	THUMPD1 (ENSGALG00010017957)	ACSM3 (ENSGALG00010017967)
Anatidae	ANCESTRAL SPECIES	7	ENSGT00940000155366.a	ENSGT00390000001653	ENSGT00940000161164	ENSGT00390000013826	ENSGT00390000013271	ENSGT00940000166211	ENSGT00390000004428.b	ENSGT00950000183193.A.c.a ##27	ENSGT00950000182894.A.b.a	ENSGT00950000182696.A.b	ENSGT00940000156222.b	ENSGT01040000240668	ENSGT00390000002886.b.a	ENSGT00940000156053	ENSGT00940000155366.b.b	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b	ENSGT00940000160685	ENSGT00390000011615.B	ENSGT00510000048539	ENSGT00550000074885	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00390000007652 #21	ENSGT00390000003337 #20	ENSGT00390000015528 #19	ENSGT00940000153417.A #18
Pink-footed goose	MODERN SPECIES	119												GRIN2A (ENSABRG00000007877)	ENSABRG00000007837	HAPSTR1 (ENSABRG00000007822)	USP7 (ENSABRG00000007793)	MAPK8IP3 (ENSABRG00000000441) #22	MRPS34 (ENSABRG00000000111) #24	GLYR1 (ENSABRG00000000094)	ROGDI (ENSABRG00000000090)	ENSABRG00000021307	ENSABRG00000021306	RBFOX1 (ENSABRG00000021282)	ENSABRG00000021273
Duck	MODERN SPECIES	6	ENSAPLG00000018580	CLEC16A (ENSAPLG00000002585)	DEXI (ENSAPLG00000002608)	ENSAPLG00000028876	TVP23A (ENSAPLG00000003074)	NUBP1 (ENSAPLG00000003389) ##27	TEKT5 (ENSAPLG00000003701)	ENSAPLG00000017858	EMP2 (ENSAPLG00000003965)	GRIN2A (ENSAPLG00000004053)	ENSAPLG00000028640	ENSAPLG00000015623	HAPSTR1 (ENSAPLG00000015595)	ENSAPLG00000025761	USP7 (ENSAPLG00000015128)	MAPK8IP3 (ENSAPLG00000014189) #22	MRPS34 (ENSAPLG00000017503) #24	GLYR1 (ENSAPLG00000013726)	ROGDI (ENSAPLG00000013380)	ENSAPLG00000013376	ENSAPLG00000019242	ENSAPLG00000026197	RBFOX1 (ENSAPLG00000013263)	ENSAPLG00000030838	ENSAPLG00000024865	TMEM114 (ENSAPLG00000013247)	ABAT (ENSAPLG00000012308)	TMEM186 (ENSAPLG00000011977)	PMM2 (ENSAPLG00000012003)	CARHSP1 (ENSAPLG00000026317)	JPT2 (ENSAPLG00000011858) #21
African ostrich	MODERN SPECIES	516	ENSSCUG00000006575	ENSSCUG00000006576	TBC1D24 (ENSSCUG00000006580)	ATP6V0C (ENSSCUG00000006586)	AMDHD2 (ENSSCUG00000006589)	ENSSCUG00000006592	ENSSCUG00000006608	RNPS1 (ENSSCUG00000006615)	TELO2 (ENSSCUG00000006622) #17	IFT140 (ENSSCUG00000006631) #18	TMEM204 (ENSSCUG00000006638) #19	CRAMP1 (ENSSCUG00000006643) #20	JPT2 (ENSSCUG00000006649) #21	ENSSCUG00000006651	ENSSCUG00000006652	MAPK8IP3 (ENSSCUG00000006682) #22	GLYR1 (ENSSCUG00000006761)	ROGDI (ENSSCUG00000006773)	ENSSCUG00000006774
Australian saltwater crocodile	MODERN SPECIES	42	NTN3 (ENSCPRG00005000848)	TBC1D24 (ENSCPRG00005000819)	ATP6V0C (ENSCPRG00005000800)	AMDHD2 (ENSCPRG00005000778)	ENSCPRG00005000774	ENSCPRG00005000767	ENSCPRG00005000750	RNPS1 (ENSCPRG00005000740)	ENSCPRG00005000734	TELO2 (ENSCPRG00005000645) #17	TMEM204 (ENSCPRG00005000627) #19	IFT140 (ENSCPRG00005000596) #18	CRAMP1 (ENSCPRG00005000537) #20	JPT2 (ENSCPRG00005000524) #21	ENSCPRG00005000516	MAPK8IP3 (ENSCPRG00005000441) #22	NME3 (ENSCPRG00005000423) #23	MRPS34 (ENSCPRG00005000417) #24	EME2 (ENSCPRG00005000409) #25	SPSB3 (ENSCPRG00005000400) #26	NUBP2 (ENSCPRG00005000391) #27	IGFALS (ENSCPRG00005000385) #28	CCDC78 (ENSCPRG00005000374)	ANTKMT (ENSCPRG00005000349)	METRN (ENSCPRG00005000318)	ENSCPRG00005000302	WDR24 (ENSCPRG00005000295)	JMJD8 (ENSCPRG00005000254)	STUB1 (ENSCPRG00005000243)	ENSCPRG00005000232	RHOT2 (ENSCPRG00005000198)
Anura	ANCESTRAL SPECIES	138	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27
Frog	MODERN SPECIES	9	c8orf33 (ENSXETG00000024441)	amdhd2 (ENSXETG00000020279)	tbc1d24.1 (ENSXETG00000020284)	ntn3 (ENSXETG00000020288)	ENSXETG00000048065	nog2 (ENSXETG00000020301)	ankfn1l (ENSXETG00000020302)	ENSXETG00000046637	tedc2 (ENSXETG00000032467)	ENSXETG00000044134	ENSXETG00000033514	ENSXETG00000037929	ENSXETG00000039949	ccnf (ENSXETG00000012459)	XB5829846 [provisional:mfsd1] (ENSXETG00000012456)	mapk8ip3 (ENSXETG00000034183) #22	rab40c (ENSXETG00000042241)	ubfd1 (ENSXETG00000031242)	ears2 (ENSXETG00000012433)	cog7 (ENSXETG00000012431)	scnn1b (ENSXETG00000027567)	scnn1g (ENSXETG00000012423)	usp31 (ENSXETG00000012419)	hs3st2 (ENSXETG00000049108)	ENSXETG00000047187	ENSXETG00000040015	gcnt7 (ENSXETG00000004372)	ENSXETG00000049189	ENSXETG00000037485	ENSXETG00000031754	ENSXETG00000004380
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000029861	RNPS1 (ENSLLEG00000029820)	ENSLLEG00000029800	TELO2 (ENSLLEG00000029748) #17	TMEM204 (ENSLLEG00000029727) #19	IFT140 (ENSLLEG00000029565) #18	CRAMP1 (ENSLLEG00000029510) #20	JPT2 (ENSLLEG00000029452) #21	ENSLLEG00000029330	ENSLLEG00000029277	ENSLLEG00000029146	ENSLLEG00000029014	ENSLLEG00000028930	ENSLLEG00000028893	ENSLLEG00000028848	MAPK8IP3 (ENSLLEG00000028772) #22	ENSLLEG00000028752	ENSLLEG00000028738	NME3 (ENSLLEG00000028485) #23	MRPS34 (ENSLLEG00000028429) #24	EME2 (ENSLLEG00000028385) #25	SPSB3 (ENSLLEG00000028340) #26	NUBP2 (ENSLLEG00000028212) #27	ENSLLEG00000028180	ENSLLEG00000028144	ENSLLEG00000028128	ENSLLEG00000028105	NAA60 (ENSLLEG00000028078)	INTS15 (ENSLLEG00000028034)	ENSLLEG00000028001	ENSLLEG00000027947
Coelacanth	MODERN SPECIES	635								ENSLACG00000002113	ENSLACG00000002471	CRAMP1 (ENSLACG00000003318) #20	ENSLACG00000005881 #21	ENSLACG00000007743	TEKT4 (ENSLACG00000008090)	ENSLACG00000010954	ENSLACG00000011235	MAPK8IP3 (ENSLACG00000011576) #22	NME3 (ENSLACG00000013034) #23	MRPS34 (ENSLACG00000013170) #24	EME2 (ENSLACG00000013390) #25	SPSB3 (ENSLACG00000013551) #26	NUBP2 (ENSLACG00000013716) #27	IGFALS (ENSLACG00000013872) #28	ENSLACG00000014290	ANTKMT (ENSLACG00000014511)	METRN (ENSLACG00000014741)	FBXL16 (ENSLACG00000015299)	WDR24 (ENSLACG00000015889)	ENSLACG00000015997
Actinopterygii	ANCESTRAL SPECIES	398													ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27
Neopterygii	ANCESTRAL SPECIES	170	ENSGT00940000165566	ENSGT00390000017379	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27
Osteoglossocephalai	ANCESTRAL SPECIES	154								ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153470.a.b.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00940000158312.e	ENSGT00940000153820.b.b	ENSGT00950000182933.B.a.a	ENSGT00930000151045.e	ENSGT00990000204060
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	466															ENSGT00940000160875.j	ENSGT00940000153496.a.a.o #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00390000012605	ENSGT00940000158312.f	ENSGT00390000015438
P. kingsleyae	MODERN SPECIES	58	emc10 (ENSPKIG00000021320)	zgc:195001 (ENSPKIG00000021356)	ENSPKIG00000021374	tbc1d17 (ENSPKIG00000021386)	nucb1 (ENSPKIG00000021431)	ccndx (ENSPKIG00000021467)	PPFIA3 (ENSPKIG00000021520)	ENSPKIG00000021620	ENSPKIG00000021645	ENSPKIG00000021662	hsd17b14 (ENSPKIG00000021694)	bcat2 (ENSPKIG00000021768)	baxa (ENSPKIG00000021806)	MAP2K3 (ENSPKIG00000021907)	tmem11 (ENSPKIG00000021987)	mapk8ip3 (ENSPKIG00000022083) #22	ENSPKIG00000022289	nme3 (ENSPKIG00000022312) #23	mrps34 (ENSPKIG00000022331) #24	atp6v0ca (ENSPKIG00000022347)	amdhd2 (ENSPKIG00000022364)	JMJD8 (ENSPKIG00000022394)	antkmt (ENSPKIG00000022501)	IFT140 (ENSPKIG00000022432) #18	xpo6 (ENSPKIG00000022550)	ENSPKIG00000022631	litaf (ENSPKIG00000022648)	snn (ENSPKIG00000022664)	zc3h7a (ENSPKIG00000022694)	pla2g10 (ENSPKIG00000022770)	parn (ENSPKIG00000022807)
Asian bonytongue	MODERN SPECIES	23	ENSSFOG00015008664	hspbp1 (ENSSFOG00015008614)	tmem86b (ENSSFOG00015008581)	aspdh (ENSSFOG00015008539)	gys1 (ENSSFOG00015008475)	pold1 (ENSSFOG00015008405)	zgc:55558 (ENSSFOG00015008376)	SLC17A7 (ENSSFOG00015008330)	ENSSFOG00015008308	ENSSFOG00015008283	eps8l1a (ENSSFOG00015008258)	dcun1d3 (ENSSFOG00015008246)	ENSSFOG00015025480	ENSSFOG00015008171	MAP2K3 (ENSSFOG00015008110)	mapk8ip3 (ENSSFOG00015008039) #22	nme3 (ENSSFOG00015007974) #23	mrps34 (ENSSFOG00015027593) #24	ATP6V0C (ENSSFOG00015031277)	zgc:100868 (ENSSFOG00015007389)	zgc:100868 (ENSSFOG00015006793)	fus (ENSSFOG00015030804)	vkorc1 (ENSSFOG00015024706)	mapk7 (ENSSFOG00015006670)	kat8 (ENSSFOG00015006636)	rnf25 (ENSSFOG00015026146)	ENSSFOG00015006414	thoc6 (ENSSFOG00015006385)	srrm2 (ENSSFOG00015027130)	ENSSFOG00015006326	ENSSFOG00015006309
Osteoglossiformes	ANCESTRAL SPECIES	87	ENSGT00530000063694.a.h	ENSGT00940000164148.a.b	ENSGT00390000004566.c	ENSGT00940000154944.bb	ENSGT00390000006695	ENSGT00940000154959	ENSGT00940000155286	ENSGT01030000234586.A.a.b	ENSGT00940000160875.i	ENSGT00390000014840.a	ENSGT00390000006617.a	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.p #22	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153470.a.b.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00940000158312.e	ENSGT00940000153820.b.b	ENSGT00950000182933.B.a.a	ENSGT00930000151045.e	ENSGT00990000204060	ENSGT01100000263515.a.b.a.b.a.h ##16
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015016936	cox6b1 (ENSSFOG00015016958)	KATNIP (ENSSFOG00015030287)	DCUN1D3 (ENSSFOG00015029071)	lyrm1 (ENSSFOG00015028653)	DNAH3 (ENSSFOG00015017037)	MPRIP (ENSSFOG00015017185)	KCNJ18 (ENSSFOG00015017347)	MAP2K3 (ENSSFOG00015017361)	natd1 (ENSSFOG00015017400)	tmem11 (ENSSFOG00015031133)	dhrs7b (ENSSFOG00015017425)	CRAMP1 (ENSSFOG00015017473) #20	jpt2 (ENSSFOG00015017678) #21	ENSSFOG00015017686	mapk8ip3 (ENSSFOG00015017726) #22	spsb3a (ENSSFOG00015026406) #26	nubp2 (ENSSFOG00015017820) #27	atp6v0ca (ENSSFOG00015025963)	TBC1D24 (ENSSFOG00015017859)	ENSSFOG00015017874	ntn2 (ENSSFOG00015017974)	nog2 (ENSSFOG00015018190)	ENSSFOG00015018202	CAPN15 (ENSSFOG00015018233)	MSS51 (ENSSFOG00015018291)	ENSSFOG00015018324	ENSSFOG00015018333	STUB1 (ENSSFOG00015032771)	ENSSFOG00015018358	crp2 (ENSSFOG00015018373) ##16
P. kingsleyae	MODERN SPECIES	170	cox6b1 (ENSPKIG00000009630)	ENSPKIG00000009614	ENSPKIG00000009584	DCUN1D3 (ENSPKIG00000009560)	lyrm1 (ENSPKIG00000009541)	DNAH3 (ENSPKIG00000009442)	MPRIP (ENSPKIG00000009138)	KCNJ18 (ENSPKIG00000008945)	MAP2K3 (ENSPKIG00000008897)	natd1 (ENSPKIG00000008830)	tmem11 (ENSPKIG00000008790)	dhrs7b (ENSPKIG00000008762)	CRAMP1 (ENSPKIG00000008706) #20	jpt2 (ENSPKIG00000008686) #21	ENSPKIG00000008645	mapk8ip3 (ENSPKIG00000008596) #22	EME2 (ENSPKIG00000008539) #25	spsb3a (ENSPKIG00000008502) #26	nubp2 (ENSPKIG00000008473) #27	ATP6V0C (ENSPKIG00000008460)	TBC1D24 (ENSPKIG00000008441)	ENSPKIG00000008390	ntn2 (ENSPKIG00000008341)	nog2 (ENSPKIG00000008324)	ENSPKIG00000008143	CAPN15 (ENSPKIG00000008024)	MSS51 (ENSPKIG00000007982)	ENSPKIG00000007954	STUB1 (ENSPKIG00000007913)	crp2 (ENSPKIG00000007863) ##16	ENSPKIG00000007838
Clupeocephala	ANCESTRAL SPECIES	327											ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00390000012605	ENSGT00940000158312.f	ENSGT00390000015438	ENSGT00390000014771.b.a	ENSGT00390000002810	ENSGT00940000160286
Euteleosteomorpha	ANCESTRAL SPECIES	320											ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a
Acanthomorphata	ANCESTRAL SPECIES	266									ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Seriola	ANCESTRAL SPECIES	57	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Greater amberjack	MODERN SPECIES	89	ENSSDUG00000017208	slc17a7a (ENSSDUG00000017180)	zgc:55558 (ENSSDUG00000017164)	pold1 (ENSSDUG00000017052)	gys1 (ENSSDUG00000017012)	aspdh (ENSSDUG00000016990)	tmem86b (ENSSDUG00000016980)	hspbp1 (ENSSDUG00000016953)	tufm (ENSSDUG00000016896)	ENSSDUG00000016846	ENSSDUG00000016831	tmem11 (ENSSDUG00000016822)	dhrs7b (ENSSDUG00000016792)	CRAMP1 (ENSSDUG00000016689) #20	jpt2 (ENSSDUG00000016654) #21	mapk8ip3 (ENSSDUG00000016594) #22	nme3 (ENSSDUG00000016556) #23	mrps34 (ENSSDUG00000016535) #24	spsb3a (ENSSDUG00000016524) #26	ENSSDUG00000016521	ENSSDUG00000016513	ATP6V0C (ENSSDUG00000016511)	ypel3 (ENSSDUG00000016503)	gdpd3a (ENSSDUG00000016491)	mapk3 (ENSSDUG00000016464)	nudt9 (ENSSDUG00000016449)	ENSSDUG00000016411	rabep2 (ENSSDUG00000016382)	atp2a1 (ENSSDUG00000016334)	NHERF1 (ENSSDUG00000016320)	ENSSDUG00000016304
Yellowtail amberjack	MODERN SPECIES	1990		slc17a7a (ENSSLDG00000006721)	zgc:55558 (ENSSLDG00000006706)	pold1 (ENSSLDG00000006630)	gys1 (ENSSLDG00000006575)	aspdh (ENSSLDG00000006551)	tmem86b (ENSSLDG00000006544)	hspbp1 (ENSSLDG00000006530)	tufm (ENSSLDG00000006494)	ENSSLDG00000006475	natd1 (ENSSLDG00000006460)	tmem11 (ENSSLDG00000006454)	dhrs7b (ENSSLDG00000006425)	CRAMP1 (ENSSLDG00000006361) #20	jpt2 (ENSSLDG00000006338) #21	mapk8ip3 (ENSSLDG00000006106) #22	nme3 (ENSSLDG00000006069) #23
Barramundi perch	MODERN SPECIES	41	nme4 (ENSLCAG00010019128)	eps8l1a (ENSLCAG00010019136)	ENSLCAG00010019140	slc17a7a (ENSLCAG00010019196)	zgc:55558 (ENSLCAG00010019375)	pold1 (ENSLCAG00010000286)	gys1 (ENSLCAG00010000455)	hspbp1 (ENSLCAG00010000553)	tmem86b (ENSLCAG00010000571)	tufm (ENSLCAG00010000578)	KCNJ18 (ENSLCAG00010000586)	natd1 (ENSLCAG00010000613)	tmem11 (ENSLCAG00010000622)	dhrs7b (ENSLCAG00010000630)	jpt2 (ENSLCAG00010000641) #21	mapk8ip3 (ENSLCAG00010000759) #22	nme3 (ENSLCAG00010000887) #23	mrps34 (ENSLCAG00010000891) #24	spsb3a (ENSLCAG00010000900) #26	ATP6V0C (ENSLCAG00010000917)	ypel3 (ENSLCAG00010000937)	gdpd3a (ENSLCAG00010000941)	mapk3 (ENSLCAG00010000951)	nudt9 (ENSLCAG00010001013)	ENSLCAG00010001016	rabep2 (ENSLCAG00010001019)	atp2a1 (ENSLCAG00010001191)	NHERF1 (ENSLCAG00010001599)	ENSLCAG00010001604	xylt2 (ENSLCAG00010001610)	ENSLCAG00010001622
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Turbot	MODERN SPECIES	10	slc17a7a (ENSSMAG00000010243)	zgc:55558 (ENSSMAG00000010231)	pold1 (ENSSMAG00000010177)	gys1 (ENSSMAG00000010135)	aspdh (ENSSMAG00000010102)	tmem86b (ENSSMAG00000023587)	ENSSMAG00000010092	ENSSMAG00000010053	KCNJ18 (ENSSMAG00000010049)	ENSSMAG00000024760	ENSSMAG00000027605	tmem11 (ENSSMAG00000034921)	ENSSMAG00000009989	ENSSMAG00000009909 #20	jpt2 (ENSSMAG00000032371) #21	mapk8ip3 (ENSSMAG00000009876) #22	nme3 (ENSSMAG00000009839) #23	mrps34 (ENSSMAG00000009866) #24	spsb3a (ENSSMAG00000033531) #26	ENSSMAG00000009799	ypel3 (ENSSMAG00000009762)	gdpd3a (ENSSMAG00000009758)	mapk3 (ENSSMAG00000009704)	nudt9 (ENSSMAG00000009681)	ENSSMAG00000009651	ENSSMAG00000009586	ENSSMAG00000009500	ENSSMAG00000009491	ENSSMAG00000028106	xylt2 (ENSSMAG00000009415)	ENSSMAG00000009402
Tongue sole	MODERN SPECIES	8	ENSCSEG00000013715	slc17a7a (ENSCSEG00000013728)	zgc:55558 (ENSCSEG00000013739)	pold1 (ENSCSEG00000013752)	gys1 (ENSCSEG00000013807)	aspdh (ENSCSEG00000013820)	tmem86b (ENSCSEG00000013827)	hspbp1 (ENSCSEG00000013837)	tufm (ENSCSEG00000013841)	ENSCSEG00000013868	natd1 (ENSCSEG00000013872)	tmem11 (ENSCSEG00000013880)	dhrs7b (ENSCSEG00000013883)	CRAMP1 (ENSCSEG00000013899) #20	jpt2 (ENSCSEG00000013950) #21	mapk8ip3 (ENSCSEG00000013970) #22	ENSCSEG00000014034	GDE1 (ENSCSEG00000014036)	DNAAF5 (ENSCSEG00000014045)	prkar1b (ENSCSEG00000014062)	pdgfab (ENSCSEG00000014076)	ENSCSEG00000014093	sun1b (ENSCSEG00000014129)	ENSCSEG00000014179	gprc5ba (ENSCSEG00000014184)	proza (ENSCSEG00000014186)	GPR139 (ENSCSEG00000014194)	ENSCSEG00000014201	ENSCSEG00000014209	kdelr2a (ENSCSEG00000014214)	mfsd13al (ENSCSEG00000014223)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000001617	slc17a7a (ENSMAMG00000001662)	zgc:55558 (ENSMAMG00000025989)	pold1 (ENSMAMG00000001747)	gys1 (ENSMAMG00000001811)	aspdh (ENSMAMG00000001860)	tmem86b (ENSMAMG00000001891)	ENSMAMG00000001916	ENSMAMG00000002053	KCNJ18 (ENSMAMG00000002065)	ENSMAMG00000028516	TMEM11 (ENSMAMG00000002076)	ENSMAMG00000002088	ENSMAMG00000002123 #20	jpt2 (ENSMAMG00000027505) #21	mapk8ip3 (ENSMAMG00000002307) #22	nme3 (ENSMAMG00000028290) #23	mrps34 (ENSMAMG00000002399) #24	spsb3a (ENSMAMG00000002407) #26	ENSMAMG00000025593	ypel3 (ENSMAMG00000002454)	gdpd3a (ENSMAMG00000002464)	mapk3 (ENSMAMG00000002487)	nudt9 (ENSMAMG00000002516)	ENSMAMG00000002536	rabep2 (ENSMAMG00000002587)	atp2a1 (ENSMAMG00000002646)	ENSMAMG00000002829	ENSMAMG00000002846	xylt2 (ENSMAMG00000002887)	ENSMAMG00000002935
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00390000015495	ENSGT00940000163663.A.a	ENSGT00730000111100.a.a	ENSGT00940000156643	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.c.b	ENSGT00940000155335.s.b	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000002982	ENSBSLG00000002987	ENSBSLG00000003572	desi1a (ENSBSLG00000003614)	flii (ENSBSLG00000003729)	LLGL1 (ENSBSLG00000003840)	ENSBSLG00000004007	drg2 (ENSBSLG00000004069)	gfer (ENSBSLG00000004128)	syngr3a (ENSBSLG00000004131)	znf598 (ENSBSLG00000004139)	tmem11 (ENSBSLG00000004163)	dhrs7b (ENSBSLG00000004172)	CRAMP1 (ENSBSLG00000004194) #20	jpt2 (ENSBSLG00000004263) #21	mapk8ip3 (ENSBSLG00000004279) #22	nme3 (ENSBSLG00000004506) #23	mrps34 (ENSBSLG00000004531) #24	spsb3a (ENSBSLG00000004535) #26	ATP6V0C (ENSBSLG00000004541)	ypel3 (ENSBSLG00000004544)	gdpd3a (ENSBSLG00000004547)	mapk3 (ENSBSLG00000004559)	nudt9 (ENSBSLG00000004681)	ENSBSLG00000004683	rabep2 (ENSBSLG00000004686)	atp2a1 (ENSBSLG00000004692)	ENSBSLG00000004705	ENSBSLG00000004709	xylt2 (ENSBSLG00000004710)	ENSBSLG00000004711
Climbing perch	MODERN SPECIES	21	ENSATEG00000029203	ENSATEG00000030048	ENSATEG00000005806	ENSATEG00000005774	FLII (ENSATEG00000005618)	LLGL1 (ENSATEG00000005486)	MYO15A (ENSATEG00000027952)	drg2 (ENSATEG00000005398)	gfer (ENSATEG00000005389)	syngr3a (ENSATEG00000028278)	znf598 (ENSATEG00000005281)	ENSATEG00000005275	ENSATEG00000005251	ENSATEG00000005090 #20	jpt2 (ENSATEG00000029497) #21	mapk8ip3 (ENSATEG00000004980) #22	nme3 (ENSATEG00000026316) #23	mrps34 (ENSATEG00000004971) #24	spsb3a (ENSATEG00000029439) #26	ENSATEG00000004909	ypel3 (ENSATEG00000004884)	gdpd3a (ENSATEG00000004874)	mapk3 (ENSATEG00000004831)	nudt9 (ENSATEG00000004815)	ENSATEG00000004775	ENSATEG00000004673	ENSATEG00000004550	ENSATEG00000004530	ENSATEG00000004481	xylt2 (ENSATEG00000004417)	ENSATEG00000004407
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Tetraodontidae	ANCESTRAL SPECIES	8													ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a	ENSGT00940000157800
Fugu	MODERN SPECIES	17	LLGL1 (ENSTRUG00000017766)	ENSTRUG00000031144	ENSTRUG00000029118	ENSTRUG00000028068	drg2 (ENSTRUG00000001503)	gfer (ENSTRUG00000001812)	syngr3a (ENSTRUG00000001846)	znf598 (ENSTRUG00000002074)	slc25a17 (ENSTRUG00000002474)	ENSTRUG00000027419	rpusd1 (ENSTRUG00000003041)	ENSTRUG00000019795	dhrs7b (ENSTRUG00000020892)	CRAMP1 (ENSTRUG00000003674) #20	jpt2 (ENSTRUG00000003866) #21	mapk8ip3 (ENSTRUG00000004041) #22	nme3 (ENSTRUG00000023495) #23	mrps34 (ENSTRUG00000005029) #24	spsb3a (ENSTRUG00000005089) #26	ATP6V0C (ENSTRUG00000014516)	ypel3 (ENSTRUG00000024120)	gdpd3a (ENSTRUG00000005467)	mapk3 (ENSTRUG00000005697)	nudt9 (ENSTRUG00000006123)	ENSTRUG00000020291	rabep2 (ENSTRUG00000019792)	atp2a1 (ENSTRUG00000006271)	NHERF1 (ENSTRUG00000007970)	xylt2 (ENSTRUG00000008009)	ENSTRUG00000019981	RECQL5 (ENSTRUG00000008246)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000011502	ENSTNIG00000011503	desi1a (ENSTNIG00000011504)	flii (ENSTNIG00000011505)	LLGL1 (ENSTNIG00000011506)	MYO15A (ENSTNIG00000011507)	drg2 (ENSTNIG00000002655)	gfer (ENSTNIG00000002656)	syngr3a (ENSTNIG00000002657)	znf598 (ENSTNIG00000002658)	slc25a17 (ENSTNIG00000002659)	rpusd1 (ENSTNIG00000002660)	dhrs7b (ENSTNIG00000002661)	CRAMP1 (ENSTNIG00000002662) #20	jpt2 (ENSTNIG00000005456) #21	mapk8ip3 (ENSTNIG00000011577) #22	nme3 (ENSTNIG00000011578) #23	mrps34 (ENSTNIG00000011579) #24	spsb3a (ENSTNIG00000011580) #26	ATP6V0C (ENSTNIG00000011581)	ypel3 (ENSTNIG00000002428)	gdpd3a (ENSTNIG00000011582)	mapk3 (ENSTNIG00000011583)	nudt9 (ENSTNIG00000011584)	rabep2 (ENSTNIG00000011585)	atp2a1 (ENSTNIG00000011586)	NHERF1 (ENSTNIG00000011587)	ENSTNIG00000011588	ENSTNIG00000011589	xylt2 (ENSTNIG00000011590)	ENSTNIG00000011591
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Ballan wrasse	MODERN SPECIES	483	pold1 (ENSLBEG00000023381)	SLC17A7 (ENSLBEG00000023479)	zgc:55558 (ENSLBEG00000023534)	gys1 (ENSLBEG00000023578)	aspdh (ENSLBEG00000023642)	tmem86b (ENSLBEG00000023679)	hspbp1 (ENSLBEG00000023696)	tufm (ENSLBEG00000023735)	ENSLBEG00000023771	ENSLBEG00000023789	ENSLBEG00000023816	tmem11 (ENSLBEG00000023827)	dhrs7b (ENSLBEG00000023840)	CRAMP1 (ENSLBEG00000023879) #20	jpt2 (ENSLBEG00000023929) #21	mapk8ip3 (ENSLBEG00000024197) #22	nme3 (ENSLBEG00000024609) #23	mrps34 (ENSLBEG00000024632) #24	spsb3a (ENSLBEG00000024655) #26	ATP6V0C (ENSLBEG00000024682)	ypel3 (ENSLBEG00000024696)	gdpd3a (ENSLBEG00000024734)	mapk3 (ENSLBEG00000024780)	nudt9 (ENSLBEG00000024813)	ENSLBEG00000024828	rabep2 (ENSLBEG00000024873)	atp2a1 (ENSLBEG00000024948)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	35	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
European seabass	MODERN SPECIES	21	eps8l1a (ENSDLAG00005022929)	ENSDLAG00005022935	slc17a7a (ENSDLAG00005022968)	zgc:55558 (ENSDLAG00005030311)	pold1 (ENSDLAG00005023332)	gys1 (ENSDLAG00005023480)	ENSDLAG00005031127	tmem86b (ENSDLAG00005023510)	ENSDLAG00005023516	ENSDLAG00005033708	ENSDLAG00005026864	NATD1 (ENSDLAG00005035103)	TMEM11 (ENSDLAG00005029286)	ENSDLAG00005023548	ENSDLAG00005023553 #20	mapk8ip3 (ENSDLAG00005023641) #22	nme3 (ENSDLAG00005024910) #23	spsb3a (ENSDLAG00005024914) #26	ENSDLAG00005024922	ypel3 (ENSDLAG00005032337)	gdpd3a (ENSDLAG00005027202)	mapk3 (ENSDLAG00005024940)	nudt9 (ENSDLAG00005032301)	ENSDLAG00005025104	ENSDLAG00005025109	ENSDLAG00005025196	ENSDLAG00005032996	ENSDLAG00005029131	xylt2 (ENSDLAG00005025732)	ENSDLAG00005025748	cdr2l (ENSDLAG00005033786)
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005015865	slc17a7a (ENSLCRG00005014571)	zgc:55558 (ENSLCRG00005014562)	pold1 (ENSLCRG00005014529)	gys1 (ENSLCRG00005014485)	aspdh (ENSLCRG00005014482)	tmem86b (ENSLCRG00005014480)	hspbp1 (ENSLCRG00005014479)	tufm (ENSLCRG00005014430)	ENSLCRG00005014427	ENSLCRG00005014423	natd1 (ENSLCRG00005014421)	tmem11 (ENSLCRG00005014419)	dhrs7b (ENSLCRG00005014417)	CRAMP1 (ENSLCRG00005014413) #20	mapk8ip3 (ENSLCRG00005009280) #22	nme3 (ENSLCRG00005009225) #23	tspan4b (ENSLCRG00005009221)	ENSLCRG00005009218	ENSLCRG00005009207	jpt2 (ENSLCRG00005009205) #21	PRR12 (ENSLCRG00005009202)	prrg2 (ENSLCRG00005009199)	rras (ENSLCRG00005009191)	ENSLCRG00005009189	AP2A1 (ENSLCRG00005009075)	prmt1 (ENSLCRG00005008428)	rab18b (ENSLCRG00005008411)	ENSLCRG00005008407	ENSLCRG00005007492	ENSLCRG00005007486
Gilthead seabream	MODERN SPECIES	15	slc17a7a (ENSSAUG00010013485)	zgc:55558 (ENSSAUG00010013455)	pold1 (ENSSAUG00010012637)	gys1 (ENSSAUG00010012554)	aspdh (ENSSAUG00010012547)	tmem86b (ENSSAUG00010012546)	hspbp1 (ENSSAUG00010012543)	tufm (ENSSAUG00010012317)	KCNJ18 (ENSSAUG00010012314)	ENSSAUG00010012312	natd1 (ENSSAUG00010012309)	tmem11 (ENSSAUG00010012307)	dhrs7b (ENSSAUG00010012305)	CRAMP1 (ENSSAUG00010012296) #20	jpt2 (ENSSAUG00010012292) #21	mapk8ip3 (ENSSAUG00010005892) #22	nme3 (ENSSAUG00010005774) #23	mrps34 (ENSSAUG00010005772) #24	spsb3a (ENSSAUG00010005769) #26	ATP6V0C (ENSSAUG00010005767)	ypel3 (ENSSAUG00010005764)	gdpd3a (ENSSAUG00010005763)	mapk3 (ENSSAUG00010003878)	nudt9 (ENSSAUG00010003828)	ENSSAUG00010003812	rabep2 (ENSSAUG00010003807)	rabep2 (ENSSAUG00010003669)	atp2a1 (ENSSAUG00010002949)	NHERF1 (ENSSAUG00010002839)	ENSSAUG00010002818	xylt2 (ENSSAUG00010025955)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Pike perch	MODERN SPECIES	38	ENSSLUG00000009321	slc17a7a (ENSSLUG00000005346)	zgc:55558 (ENSSLUG00000004975)	pold1 (ENSSLUG00000004188)	gys1 (ENSSLUG00000004027)	aspdh (ENSSLUG00000003987)	tmem86b (ENSSLUG00000003983)	hspbp1 (ENSSLUG00000003980)	tufm (ENSSLUG00000003934)	KCNJ18 (ENSSLUG00000003921)	natd1 (ENSSLUG00000003902)	tmem11 (ENSSLUG00000003892)	dhrs7b (ENSSLUG00000003889)	CRAMP1 (ENSSLUG00000003881) #20	jpt2 (ENSSLUG00000003867) #21	mapk8ip3 (ENSSLUG00000003797) #22	nme3 (ENSSLUG00000003715) #23	mrps34 (ENSSLUG00000003705) #24	spsb3a (ENSSLUG00000003685) #26	ATP6V0C (ENSSLUG00000003659)	ENSSLUG00000003652	ypel3 (ENSSLUG00000003644)	gdpd3a (ENSSLUG00000003635)	mapk3 (ENSSLUG00000003484)	nudt9 (ENSSLUG00000003415)	ENSSLUG00000003385	rabep2 (ENSSLUG00000003315)	atp2a1 (ENSSLUG00000002201)	NHERF1 (ENSSLUG00000002056)	ENSSLUG00000002047	xylt2 (ENSSLUG00000001870)
Channel bull blenny	MODERN SPECIES	22	ENSCGOG00000005955	slc17a7a (ENSCGOG00000005971)	zgc:55558 (ENSCGOG00000006221)	pold1 (ENSCGOG00000006275)	gys1 (ENSCGOG00000006655)	aspdh (ENSCGOG00000008781)	tmem86b (ENSCGOG00000008795)	hspbp1 (ENSCGOG00000008801)	tufm (ENSCGOG00000008932)	ENSCGOG00000009170	natd1 (ENSCGOG00000009173)	tmem11 (ENSCGOG00000009177)	dhrs7b (ENSCGOG00000009179)	CRAMP1 (ENSCGOG00000009185) #20	jpt2 (ENSCGOG00000009198) #21	mapk8ip3 (ENSCGOG00000009319) #22	nme3 (ENSCGOG00000012868) #23	mrps34 (ENSCGOG00000012876) #24	spsb3a (ENSCGOG00000012893) #26	ATP6V0C (ENSCGOG00000012922)	ypel3 (ENSCGOG00000012998)	gdpd3a (ENSCGOG00000013024)	mapk3 (ENSCGOG00000013077)	nudt9 (ENSCGOG00000014380)	ENSCGOG00000014398	rabep2 (ENSCGOG00000014429)	atp2a1 (ENSCGOG00000014471)	NHERF1 (ENSCGOG00000014780)	ENSCGOG00000014820	xylt2 (ENSCGOG00000014843)	ENSCGOG00000015132
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Lumpfish	MODERN SPECIES	23	ENSCLMG00005008270	slc17a7a (ENSCLMG00005008266)	zgc:55558 (ENSCLMG00005008265)	pold1 (ENSCLMG00005007102)	gys1 (ENSCLMG00005007023)	aspdh (ENSCLMG00005007017)	tmem86b (ENSCLMG00005007016)	hspbp1 (ENSCLMG00005007013)	tufm (ENSCLMG00005006811)	ENSCLMG00005006803	natd1 (ENSCLMG00005006801)	tmem11 (ENSCLMG00005006784)	dhrs7b (ENSCLMG00005006783)	CRAMP1 (ENSCLMG00005006714) #20	jpt2 (ENSCLMG00005006712) #21	mapk8ip3 (ENSCLMG00005006709) #22	nme3 (ENSCLMG00005006608) #23	mrps34 (ENSCLMG00005006605) #24	spsb3a (ENSCLMG00005006602) #26	ATP6V0C (ENSCLMG00005006585)	ypel3 (ENSCLMG00005006583)	gdpd3a (ENSCLMG00005006581)	mapk3 (ENSCLMG00005005860)	nudt9 (ENSCLMG00005005844)	ENSCLMG00005005842	rabep2 (ENSCLMG00005005831)	atp2a1 (ENSCLMG00005005812)	NHERF1 (ENSCLMG00005005810)	ENSCLMG00005005809	ENSCLMG00005005807	xylt2 (ENSCLMG00005005805)
Stickleback	MODERN SPECIES	10	ENSGACG00000012881	slc17a7a (ENSGACG00000012885)	zgc:55558 (ENSGACG00000012896)	pold1 (ENSGACG00000012911)	gys1 (ENSGACG00000012936)	aspdh (ENSGACG00000012942)	tmem86b (ENSGACG00000012950)	hspbp1 (ENSGACG00000012953)	tufm (ENSGACG00000012961)	ENSGACG00000012980	natd1 (ENSGACG00000012984)	tmem11 (ENSGACG00000012988)	dhrs7b (ENSGACG00000012990)	CRAMP1 (ENSGACG00000012998) #20	jpt2 (ENSGACG00000013012) #21	mapk8ip3 (ENSGACG00000013019) #22	nme3 (ENSGACG00000013028) #23	mrps34 (ENSGACG00000013041) #24	ENSGACG00000013046	ENSGACG00000013048	HSPA2 (ENSGACG00000013051)	ENSGACG00000013052	ENSGACG00000013055	spsb3a (ENSGACG00000013059) #26	ATP6V0C (ENSGACG00000013063)	ypel3 (ENSGACG00000013080)	gdpd3a (ENSGACG00000013095)	mapk3 (ENSGACG00000013102)	nudt9 (ENSGACG00000013119)	ENSGACG00000013134	ENSGACG00000013138
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Oryzias	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT01020000230358.h.d.b.a.c.b.t.a.a.b.a.a.b	ENSGT01090000259993.B.c.b.a.a.a.a.a.b	ENSGT01020000230358.h.d.b.b.g.b.a.b.b.a.a	ENSGT01090000259993.B.c.b.a.a.a.a.a.a	ENSGT01020000230358.h.d.b.a.c.b.t.b	ENSGT01020000230358.h.d.b.b.g.b.a.b.b.a.b.a.b	ENSGT01100000263566.b.b.b.a.a.b.b.a.a.a.b.a.a.a.b	ENSGT01090000259993.C.a	ENSGT01090000259993.D.b.d	ENSGT00940000163849.i.a.a.a.b.s.b	ENSGT01100000263566.b.b.b.a.a.b.b.a.a.a.b.a.a.b.b	ENSGT01020000230358.h.d.b.a.c.b.t.a.a.b.b
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26
Javanese ricefish	MODERN SPECIES	22	eps8l1a (ENSOJAG00000008902)	ENSOJAG00000008488	slc17a7a (ENSOJAG00000007627)	zgc:55558 (ENSOJAG00000007499)	gys1 (ENSOJAG00000007074)	aspdh (ENSOJAG00000006993)	tmem86b (ENSOJAG00000006978)	hspbp1 (ENSOJAG00000006954)	tufm (ENSOJAG00000006746)	ENSOJAG00000006716	natd1 (ENSOJAG00000006702)	tmem11 (ENSOJAG00000006685)	dhrs7b (ENSOJAG00000006625)	CRAMP1 (ENSOJAG00000006411) #20	jpt2 (ENSOJAG00000006396) #21	mapk8ip3 (ENSOJAG00000006152) #22	nme3 (ENSOJAG00000006123) #23	mrps34 (ENSOJAG00000006105) #24	spsb3a (ENSOJAG00000006086) #26	ENSOJAG00000006044	ENSOJAG00000006018	ENSOJAG00000006005	ENSOJAG00000005980	ENSOJAG00000005959	ENSOJAG00000005929	ENSOJAG00000005917	ENSOJAG00000005896	ENSOJAG00000005880	ENSOJAG00000005868	ENSOJAG00000005847	ENSOJAG00000005838
Indian medaka	MODERN SPECIES	9	ENSOMEG00000016616	slc17a7a (ENSOMEG00000016669)	zgc:55558 (ENSOMEG00000016685)	pold1 (ENSOMEG00000016731)	gys1 (ENSOMEG00000016807)	aspdh (ENSOMEG00000016841)	hspbp1 (ENSOMEG00000016890)	tufm (ENSOMEG00000016958)	ENSOMEG00000016976	ENSOMEG00000000425	natd1 (ENSOMEG00000017025)	tmem11 (ENSOMEG00000017034)	dhrs7b (ENSOMEG00000017059)	CRAMP1 (ENSOMEG00000017162) #20	jpt2 (ENSOMEG00000017199) #21	mapk8ip3 (ENSOMEG00000017605) #22	nme3 (ENSOMEG00000017231) #23	mrps34 (ENSOMEG00000017698) #24	spsb3a (ENSOMEG00000017747) #26	ENSOMEG00000017771	ENSOMEG00000017793	ENSOMEG00000017805	ENSOMEG00000017812	ENSOMEG00000017819	ENSOMEG00000017831	ENSOMEG00000000440	ENSOMEG00000017848	ENSOMEG00000017855	ENSOMEG00000017860	ENSOMEG00000017865	ENSOMEG00000017873
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26
Japanese Medaka HdrR	MODERN SPECIES	22	slc17a7a (ENSORLG00000011296)	zgc:55558 (ENSORLG00000024443)	pold1 (ENSORLG00000011359)	gys1 (ENSORLG00000011434)	aspdh (ENSORLG00000011451)	tmem86b (ENSORLG00000011461)	hspbp1 (ENSORLG00000011480)	tufm (ENSORLG00000011497)	ENSORLG00000011503	ENSORLG00000023644	natd1 (ENSORLG00000022403)	tmem11 (ENSORLG00000011519)	dhrs7b (ENSORLG00000011564)	CRAMP1 (ENSORLG00000011587) #20	jpt2 (ENSORLG00000011625) #21	mapk8ip3 (ENSORLG00000011718) #22	nme3 (ENSORLG00000011728) #23	mrps34 (ENSORLG00000011731) #24	spsb3a (ENSORLG00000011746) #26	ENSORLG00000030329	ENSORLG00000024303	ENSORLG00000028651	ENSORLG00000029391	ENSORLG00000023671	ENSORLG00000011755	ENSORLG00000022719	ENSORLG00000026700	ENSORLG00000022902	ENSORLG00000028397	ENSORLG00000022945	ENSORLG00000023162
Chinese medaka	MODERN SPECIES	989	xpo6 (ENSOSIG00000005417)	nme4 (ENSOSIG00000005409)	eps8l1a (ENSOSIG00000005406)	ENSOSIG00000005401	slc17a7a (ENSOSIG00000005226)	zgc:55558 (ENSOSIG00000005221)	pold1 (ENSOSIG00000005194)	gys1 (ENSOSIG00000005081)	aspdh (ENSOSIG00000005069)	tmem86b (ENSOSIG00000005067)	KCNJ12 (ENSOSIG00000020976)	ENSOSIG00000020974	dhrs7b (ENSOSIG00000020973)	CRAMP1 (ENSOSIG00000020962) #20	jpt2 (ENSOSIG00000020957) #21	mapk8ip3 (ENSOSIG00000020930) #22	nme3 (ENSOSIG00000020889) #23	mrps34 (ENSOSIG00000020884) #24	spsb3a (ENSOSIG00000020875) #26	ENSOSIG00000020870	ENSOSIG00000020866	ENSOSIG00000020862	ENSOSIG00000020854
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
NAME_6	ANCESTRAL SPECIES	66	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Amazon molly	MODERN SPECIES	392	zgc:55558 (ENSPFOG00000008086)	pold1 (ENSPFOG00000007750)	gys1 (ENSPFOG00000007449)	aspdh (ENSPFOG00000007369)	tmem86b (ENSPFOG00000007347)	hspbp1 (ENSPFOG00000007285)	ENSPFOG00000021722	tufm (ENSPFOG00000007043)	ENSPFOG00000021736	ENSPFOG00000006994	natd1 (ENSPFOG00000006975)	tmem11 (ENSPFOG00000021915)	dhrs7b (ENSPFOG00000006930)	CRAMP1 (ENSPFOG00000006747) #20	jpt2 (ENSPFOG00000006687) #21	mapk8ip3 (ENSPFOG00000006351) #22	nme3 (ENSPFOG00000006239) #23	mrps34 (ENSPFOG00000006202) #24	spsb3a (ENSPFOG00000006149) #26
Sailfin molly	MODERN SPECIES	891										ENSPLAG00000018021	natd1 (ENSPLAG00000018045)	tmem11 (ENSPLAG00000018053)	dhrs7b (ENSPLAG00000018084)	CRAMP1 (ENSPLAG00000018143) #20	jpt2 (ENSPLAG00000018162) #21	mapk8ip3 (ENSPLAG00000018259) #22	mrps34 (ENSPLAG00000018270) #24	nme3 (ENSPLAG00000019539) #23	spsb3a (ENSPLAG00000019620) #26	ATP6V0C (ENSPLAG00000019629)	ypel3 (ENSPLAG00000019643)	gdpd3a (ENSPLAG00000019727)	mapk3 (ENSPLAG00000019751)	nudt9 (ENSPLAG00000019757)	ENSPLAG00000019794	rabep2 (ENSPLAG00000019838)	atp2a1 (ENSPLAG00000019897)	NHERF1 (ENSPLAG00000019907)	ENSPLAG00000019912	xylt2 (ENSPLAG00000000442)	ENSPLAG00000019956
Guppy	MODERN SPECIES	460	xylt1 (ENSPREG00000013730)	slc17a7a (ENSPREG00000013748)	zgc:55558 (ENSPREG00000013776)	pold1 (ENSPREG00000013794)	gys1 (ENSPREG00000013821)	aspdh (ENSPREG00000013833)	tmem86b (ENSPREG00000013874)	hspbp1 (ENSPREG00000013886)	tufm (ENSPREG00000013913)	ENSPREG00000013949	natd1 (ENSPREG00000013951)	tmem11 (ENSPREG00000013969)	dhrs7b (ENSPREG00000013978)	CRAMP1 (ENSPREG00000014002) #20	jpt2 (ENSPREG00000014084) #21	mapk8ip3 (ENSPREG00000014230) #22	nme3 (ENSPREG00000014544) #23	mrps34 (ENSPREG00000015105) #24	spsb3a (ENSPREG00000015146) #26	ATP6V0C (ENSPREG00000015166)	ypel3 (ENSPREG00000015178)	gdpd3a (ENSPREG00000015195)	mapk3 (ENSPREG00000015248)	nudt9 (ENSPREG00000015271)	ENSPREG00000015319	rabep2 (ENSPREG00000015356)	atp2a1 (ENSPREG00000015392)	NHERF1 (ENSPREG00000015509)	ENSPREG00000015539	xylt2 (ENSPREG00000015639)	ENSPREG00000015709
Platyfish	MODERN SPECIES	7	slc17a7a (ENSXMAG00000011681)	zgc:55558 (ENSXMAG00000011691)	pold1 (ENSXMAG00000011702)	gys1 (ENSXMAG00000011787)	aspdh (ENSXMAG00000011818)	tmem86b (ENSXMAG00000027194)	hspbp1 (ENSXMAG00000011831)	tufm (ENSXMAG00000011848)	ENSXMAG00000019673	ENSXMAG00000025944	natd1 (ENSXMAG00000028964)	tmem11 (ENSXMAG00000011861)	dhrs7b (ENSXMAG00000011863)	CRAMP1 (ENSXMAG00000011872) #20	jpt2 (ENSXMAG00000011884) #21	mapk8ip3 (ENSXMAG00000011891) #22	nme3 (ENSXMAG00000011927) #23	mrps34 (ENSXMAG00000011943) #24	spsb3a (ENSXMAG00000020991) #26	ATP6V0C (ENSXMAG00000023815)	ypel3 (ENSXMAG00000027984)	gdpd3a (ENSXMAG00000011975)	mapk3 (ENSXMAG00000024764)	nudt9 (ENSXMAG00000012034)	ENSXMAG00000021235	rabep2 (ENSXMAG00000012046)	atp2a1 (ENSXMAG00000012051)	NHERF1 (ENSXMAG00000012101)	ENSXMAG00000022771	xylt2 (ENSXMAG00000012122)	ENSXMAG00000012130
NAME_4	ANCESTRAL SPECIES	88	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Sheepshead minnow	MODERN SPECIES	1170												tmem11 (ENSCVAG00000016947)	dhrs7b (ENSCVAG00000016939)	CRAMP1 (ENSCVAG00000016910) #20	jpt2 (ENSCVAG00000016821) #21	mapk8ip3 (ENSCVAG00000016799) #22	nme3 (ENSCVAG00000016317) #23	mrps34 (ENSCVAG00000016300) #24	spsb3a (ENSCVAG00000016294) #26	ATP6V0C (ENSCVAG00000016273)	ypel3 (ENSCVAG00000000415)	gdpd3a (ENSCVAG00000016254)	mapk3 (ENSCVAG00000016168)	nudt9 (ENSCVAG00000015371)	ENSCVAG00000015346
Mummichog	MODERN SPECIES	2491	ENSFHEG00000021008	slc17a7a (ENSFHEG00000020886)	zgc:55558 (ENSFHEG00000020836)	pold1 (ENSFHEG00000020825)	gys1 (ENSFHEG00000020804)	aspdh (ENSFHEG00000020744)	tmem86b (ENSFHEG00000020697)	hspbp1 (ENSFHEG00000020670)	tufm (ENSFHEG00000020646)	ENSFHEG00000020609	ENSFHEG00000020598	natd1 (ENSFHEG00000020579)	dhrs7b (ENSFHEG00000020571)	CRAMP1 (ENSFHEG00000020520) #20	jpt2 (ENSFHEG00000020500) #21	mapk8ip3 (ENSFHEG00000020471) #22	nme3 (ENSFHEG00000019990) #23	mrps34 (ENSFHEG00000019970) #24	spsb3a (ENSFHEG00000019967) #26	ATP6V0C (ENSFHEG00000019941)	ypel3 (ENSFHEG00000019925)	gdpd3a (ENSFHEG00000019900)	mapk3 (ENSFHEG00000019871)	nudt9 (ENSFHEG00000019827)	ENSFHEG00000019820	rabep2 (ENSFHEG00000019761)	atp2a1 (ENSFHEG00000019714)	NHERF1 (ENSFHEG00000019549)	ENSFHEG00000019543	xylt2 (ENSFHEG00000019532)	ENSFHEG00000019494
Aplocheiloidei	ANCESTRAL SPECIES	53	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015002001	LGALS1 (ENSNFUG00015001997)	gys1 (ENSNFUG00015001951)	aspdh (ENSNFUG00015001913)	tmem86b (ENSNFUG00015001905)	HSPBP1 (ENSNFUG00015001893)	ENSNFUG00015001884	TUFM (ENSNFUG00015001810)	KCNJ12 (ENSNFUG00015001795)	ENSNFUG00015001772	tmem11 (ENSNFUG00015001747)	ENSNFUG00015001745	DHRS7B (ENSNFUG00015001741)	CRAMP1 (ENSNFUG00015001739) #20	HN1L (ENSNFUG00015001732) #21	mapk8ip3 (ENSNFUG00015001690) #22	NME3 (ENSNFUG00015001586) #23	MRPS34 (ENSNFUG00015001543) #24	SPSB3A (ENSNFUG00015001538) #26	ATP6V0C (ENSNFUG00015001526)	YPEL3 (ENSNFUG00015001516)	gdpd3a (ENSNFUG00015001469)	MAPK3 (ENSNFUG00015001405)	NUDT9 (ENSNFUG00015001381)	SI (ENSNFUG00015001351)	ENSNFUG00015001338	rabep2 (ENSNFUG00015001317)	atp2a1 (ENSNFUG00015000775)	NHERF1 (ENSNFUG00015000490)	CABZ01066957.1 (ENSNFUG00015000305)	XYLT2 (ENSNFUG00015000108)
Mangrove rivulus	MODERN SPECIES	108	slc17a7a (ENSKMAG00000010199)	zgc:55558 (ENSKMAG00000010093)	pold1 (ENSKMAG00000010007)	gys1 (ENSKMAG00000009934)	aspdh (ENSKMAG00000009888)	tmem86b (ENSKMAG00000009860)	hspbp1 (ENSKMAG00000009840)	tufm (ENSKMAG00000009794)	ENSKMAG00000009774	ENSKMAG00000009750	natd1 (ENSKMAG00000009735)	tmem11 (ENSKMAG00000009728)	dhrs7b (ENSKMAG00000009685)	CRAMP1 (ENSKMAG00000009624) #20	jpt2 (ENSKMAG00000009589) #21	mapk8ip3 (ENSKMAG00000009552) #22	nme3 (ENSKMAG00000009532) #23	mrps34 (ENSKMAG00000009519) #24	spsb3a (ENSKMAG00000009491) #26	ATP6V0C (ENSKMAG00000009477)	ypel3 (ENSKMAG00000009444)	gdpd3a (ENSKMAG00000009427)	mapk3 (ENSKMAG00000009381)	nudt9 (ENSKMAG00000009349)	ENSKMAG00000009327	rabep2 (ENSKMAG00000009303)	atp2a1 (ENSKMAG00000009150)	NHERF1 (ENSKMAG00000009111)	ENSKMAG00000009095	xylt2 (ENSKMAG00000009043)	ENSKMAG00000009013
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Nile tilapia	MODERN SPECIES	16	zgc:55558 (ENSONIG00000029959)	pold1 (ENSONIG00000019377)	gys1 (ENSONIG00000019382)	aspdh (ENSONIG00000019385)	tmem86b (ENSONIG00000040160)	tufm (ENSONIG00000019389)	hspbp1 (ENSONIG00000019386)	KCNJ18 (ENSONIG00000021193)	ENSONIG00000038992	ENSONIG00000023291	natd1 (ENSONIG00000029787)	tmem11 (ENSONIG00000033344)	dhrs7b (ENSONIG00000019392)	CRAMP1 (ENSONIG00000019393) #20	jpt2 (ENSONIG00000019396) #21	mapk8ip3 (ENSONIG00000019397) #22	nme3 (ENSONIG00000033641) #23	mrps34 (ENSONIG00000019400) #24	spsb3a (ENSONIG00000019402) #26	ATP6V0C (ENSONIG00000019404)	ypel3 (ENSONIG00000039300)	gdpd3a (ENSONIG00000019407)	mapk3 (ENSONIG00000019408)	nudt9 (ENSONIG00000019410)	ENSONIG00000019412	rabep2 (ENSONIG00000019414)	atp2a1 (ENSONIG00000019415)	NHERF1 (ENSONIG00000019417)	ENSONIG00000019418	xylt2 (ENSONIG00000019421)	ENSONIG00000019425
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	36	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Haplochromini	ANCESTRAL SPECIES	37	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Burton s mouthbrooder	MODERN SPECIES	565													dhrs7b (ENSHBUG00000021388)	CRAMP1 (ENSHBUG00000021335) #20	jpt2 (ENSHBUG00000021229) #21	mapk8ip3 (ENSHBUG00000021187) #22	nme3 (ENSHBUG00000020775) #23	mrps34 (ENSHBUG00000020755) #24	spsb3a (ENSHBUG00000020737) #26	ATP6V0C (ENSHBUG00000020715)	ypel3 (ENSHBUG00000020708)	gdpd3a (ENSHBUG00000020700)	mapk3 (ENSHBUG00000020688)	nudt9 (ENSHBUG00000020648)	ENSHBUG00000020638	rabep2 (ENSHBUG00000020603)	atp2a1 (ENSHBUG00000020557)	NHERF1 (ENSHBUG00000020464)	ENSHBUG00000020452	xylt2 (ENSHBUG00000020384)	ENSHBUG00000020342
Haplochromini_A	ANCESTRAL SPECIES	37	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Haplochromini_B	ANCESTRAL SPECIES	41	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Eastern happy	MODERN SPECIES	16	zgc:55558 (ENSACLG00000007314)	pold1 (ENSACLG00000007207)	gys1 (ENSACLG00000007332)	aspdh (ENSACLG00000007365)	tmem86b (ENSACLG00000007370)	hspbp1 (ENSACLG00000007380)	tufm (ENSACLG00000007403)	ENSACLG00000007411	ENSACLG00000007415	natd1 (ENSACLG00000007440)	tmem11 (ENSACLG00000007446)	ENSACLG00000007455	dhrs7b (ENSACLG00000007460)	CRAMP1 (ENSACLG00000007480) #20	jpt2 (ENSACLG00000007520) #21	mapk8ip3 (ENSACLG00000007535) #22	nme3 (ENSACLG00000007786) #23	mrps34 (ENSACLG00000007811) #24	spsb3a (ENSACLG00000007819) #26	ATP6V0C (ENSACLG00000007834)	ypel3 (ENSACLG00000007835)	gdpd3a (ENSACLG00000007846)	mapk3 (ENSACLG00000007887)	nudt9 (ENSACLG00000007902)	ENSACLG00000007907	rabep2 (ENSACLG00000007938)	atp2a1 (ENSACLG00000007975)	NHERF1 (ENSACLG00000008018)	ENSACLG00000008021	xylt2 (ENSACLG00000008030)	ENSACLG00000008042
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005009815	ENSMZEG00005009804	ENSMZEG00005009800	ENSMZEG00005009792	ENSMZEG00005009781	ENSMZEG00005009774	ENSMZEG00005009763	ENSMZEG00005009755	ENSMZEG00005009745	ENSMZEG00005009735	ENSMZEG00005009728	ENSMZEG00005009719	dhrs7b (ENSMZEG00005009693)	CRAMP1 (ENSMZEG00005009624) #20	jpt2 (ENSMZEG00005009602) #21	mapk8ip3 (ENSMZEG00005009202) #22	mrps34 (ENSMZEG00005009087) #24	spsb3a (ENSMZEG00005009070) #26	ATP6V0C (ENSMZEG00005009057)	ypel3 (ENSMZEG00005009048)	gdpd3a (ENSMZEG00005009007)	mapk3 (ENSMZEG00005008971)	nudt9 (ENSMZEG00005008961)	ENSMZEG00005008941	rabep2 (ENSMZEG00005008905)	atp2a1 (ENSMZEG00005008833)	NHERF1 (ENSMZEG00005008817)	ENSMZEG00005008794	xylt2 (ENSMZEG00005008761)	ENSMZEG00005008740	RECQL5 (ENSMZEG00005008718)
P. nyererei	MODERN SPECIES	556													dhrs7b (ENSPNYG00000016716)	CRAMP1 (ENSPNYG00000016751) #20	jpt2 (ENSPNYG00000016790) #21	mapk8ip3 (ENSPNYG00000016808) #22	nme3 (ENSPNYG00000016887) #23	mrps34 (ENSPNYG00000016920) #24	spsb3a (ENSPNYG00000016936) #26	ATP6V0C (ENSPNYG00000016960)	ypel3 (ENSPNYG00000016971)	gdpd3a (ENSPNYG00000016991)	mapk3 (ENSPNYG00000017030)	nudt9 (ENSPNYG00000017075)	ENSPNYG00000017099	rabep2 (ENSPNYG00000017160)	atp2a1 (ENSPNYG00000017239)	NHERF1 (ENSPNYG00000017295)	ENSPNYG00000017308	xylt2 (ENSPNYG00000017326)	ENSPNYG00000017361
Lyretail cichlid	MODERN SPECIES	493																mapk8ip3 (ENSNBRG00000002698) #22	nme3 (ENSNBRG00000002662) #23	mrps34 (ENSNBRG00000002645) #24	spsb3a (ENSNBRG00000002608) #26	ATP6V0C (ENSNBRG00000002597)	ypel3 (ENSNBRG00000002588)	gdpd3a (ENSNBRG00000002553)	rabep2 (ENSNBRG00000002478)	mapk3 (ENSNBRG00000002431)	nudt9 (ENSNBRG00000002323)	ENSNBRG00000002220	atp2a1 (ENSNBRG00000002110)	NHERF1 (ENSNBRG00000002084)	ENSNBRG00000002011	xylt2 (ENSNBRG00000001966)	ENSNBRG00000001920
Midas cichlid	MODERN SPECIES	1292	ENSACIG00000007954	slc17a7a (ENSACIG00000007925)	zgc:55558 (ENSACIG00000007608)	pold1 (ENSACIG00000007546)	gys1 (ENSACIG00000007513)	aspdh (ENSACIG00000007446)	tmem86b (ENSACIG00000007432)	hspbp1 (ENSACIG00000007409)	tufm (ENSACIG00000007388)	KCNJ18 (ENSACIG00000007381)	natd1 (ENSACIG00000007373)	tmem11 (ENSACIG00000007366)	dhrs7b (ENSACIG00000007351)	CRAMP1 (ENSACIG00000007303) #20	jpt2 (ENSACIG00000007288) #21	mapk8ip3 (ENSACIG00000007219) #22	nme3 (ENSACIG00000007201) #23	ENSACIG00000007185	mrps34 (ENSACIG00000007180) #24	spsb3a (ENSACIG00000007162) #26	ATP6V0C (ENSACIG00000007016)	ypel3 (ENSACIG00000006927)	gdpd3a (ENSACIG00000006901)	mapk3 (ENSACIG00000006876)	nudt9 (ENSACIG00000006759)	ENSACIG00000006696	rabep2 (ENSACIG00000006667)	atp2a1 (ENSACIG00000006617)	NHERF1 (ENSACIG00000006551)	ENSACIG00000006526	xylt2 (ENSACIG00000006491)
Pomacentridae	ANCESTRAL SPECIES	47	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Pomacentridae_A	ANCESTRAL SPECIES	54	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00530000063743.a	ENSGT00500000045140.a.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Amphiprion	ANCESTRAL SPECIES	69	ENSGT00940000159110.a	ENSGT00950000182857.a.b.eb	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452.i	ENSGT00390000007101.d.a.u	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00530000063743.a	ENSGT00500000045140.a.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Clown anemonefish	MODERN SPECIES	3666		ENSAOCG00000015152	zgc:55558 (ENSAOCG00000001915)	pold1 (ENSAOCG00000015084)	gys1 (ENSAOCG00000014981)	aspdh (ENSAOCG00000001036)	tmem86b (ENSAOCG00000002358)	hspbp1 (ENSAOCG00000001034)	tufm (ENSAOCG00000001032)	ENSAOCG00000001016	natd1 (ENSAOCG00000001014)	tmem11 (ENSAOCG00000014866)	dhrs7b (ENSAOCG00000014850)	CRAMP1 (ENSAOCG00000014823) #20	jpt2 (ENSAOCG00000014761) #21	mapk8ip3 (ENSAOCG00000014703) #22	nme3 (ENSAOCG00000014468) #23	mrps34 (ENSAOCG00000014456) #24	spsb3a (ENSAOCG00000014447) #26	ATP6V0C (ENSAOCG00000000936)	ypel3 (ENSAOCG00000014406)	gdpd3a (ENSAOCG00000014395)	mapk3 (ENSAOCG00000014369)	nudt9 (ENSAOCG00000014335)	rabep2 (ENSAOCG00000014319)	ENSAOCG00000014284	atp2a1 (ENSAOCG00000014250)	NHERF1 (ENSAOCG00000014141)	ENSAOCG00000014127	xylt2 (ENSAOCG00000014102)	ENSAOCG00000014074
Orange clownfish	MODERN SPECIES	5	slc17a7a (ENSAPEG00000016129)	ENSAPEG00000016022	zgc:55558 (ENSAPEG00000016011)	pold1 (ENSAPEG00000015926)	gys1 (ENSAPEG00000015845)	aspdh (ENSAPEG00000015804)	tmem86b (ENSAPEG00000015800)	hspbp1 (ENSAPEG00000015794)	tufm (ENSAPEG00000015751)	ENSAPEG00000015702	natd1 (ENSAPEG00000015685)	tmem11 (ENSAPEG00000015666)	dhrs7b (ENSAPEG00000015655)	CRAMP1 (ENSAPEG00000015527) #20	jpt2 (ENSAPEG00000015509) #21	mapk8ip3 (ENSAPEG00000015279) #22	nme3 (ENSAPEG00000015159) #23	mrps34 (ENSAPEG00000015149) #24	spsb3a (ENSAPEG00000015123) #26	ATP6V0C (ENSAPEG00000015108)	ypel3 (ENSAPEG00000015098)	gdpd3a (ENSAPEG00000015054)	mapk3 (ENSAPEG00000015004)	nudt9 (ENSAPEG00000014991)	rabep2 (ENSAPEG00000014940)	ENSAPEG00000014910	atp2a1 (ENSAPEG00000014827)	NHERF1 (ENSAPEG00000014808)	ENSAPEG00000014768	xylt2 (ENSAPEG00000014717)	ENSAPEG00000014692
Spiny chromis	MODERN SPECIES	778	ENSAPOG00000013028	slc17a7a (ENSAPOG00000013098)	zgc:55558 (ENSAPOG00000013106)	pold1 (ENSAPOG00000013225)	gys1 (ENSAPOG00000013295)	aspdh (ENSAPOG00000013320)	tmem86b (ENSAPOG00000000364)	hspbp1 (ENSAPOG00000013358)	tufm (ENSAPOG00000013385)	ENSAPOG00000013391	natd1 (ENSAPOG00000013417)	tmem11 (ENSAPOG00000013431)	dhrs7b (ENSAPOG00000013483)	CRAMP1 (ENSAPOG00000013559) #20	jpt2 (ENSAPOG00000013576) #21	mapk8ip3 (ENSAPOG00000000996) #22	nme3 (ENSAPOG00000013861) #23	mrps34 (ENSAPOG00000013871) #24	spsb3a (ENSAPOG00000013914) #26
Bicolor damselfish	MODERN SPECIES	279	ENSSPAG00000009612	slc17a7a (ENSSPAG00000009662)	zgc:55558 (ENSSPAG00000009689)	pold1 (ENSSPAG00000009720)	gys1 (ENSSPAG00000009815)	aspdh (ENSSPAG00000009868)	hspbp1 (ENSSPAG00000009901)	tmem86b (ENSSPAG00000009925)	tufm (ENSSPAG00000009936)	ENSSPAG00000009981	natd1 (ENSSPAG00000009988)	tmem11 (ENSSPAG00000009999)	dhrs7b (ENSSPAG00000010011)	CRAMP1 (ENSSPAG00000010052) #20	jpt2 (ENSSPAG00000010198) #21	mapk8ip3 (ENSSPAG00000010242) #22	nme3 (ENSSPAG00000010523) #23	mrps34 (ENSSPAG00000010529) #24	spsb3a (ENSSPAG00000010547) #26	ATP6V0C (ENSSPAG00000010562)	ypel3 (ENSSPAG00000010578)	gdpd3a (ENSSPAG00000010609)	mapk3 (ENSSPAG00000010656)	nudt9 (ENSSPAG00000010682)	ENSSPAG00000010697	rabep2 (ENSSPAG00000010734)	atp2a1 (ENSSPAG00000010793)	NHERF1 (ENSSPAG00000010949)	ENSSPAG00000010991	xylt2 (ENSSPAG00000011029)	ENSSPAG00000011077
Tiger tail seahorse	MODERN SPECIES	147	EP300 (ENSHCOG00000014245)	pold1 (ENSHCOG00000014290)	znhit1 (ENSHCOG00000014301)	gys1 (ENSHCOG00000014348)	aspdh (ENSHCOG00000014357)	tmem86b (ENSHCOG00000014359)	hspbp1 (ENSHCOG00000014379)	tufm (ENSHCOG00000014418)	ENSHCOG00000014453	ENSHCOG00000014468	natd1 (ENSHCOG00000014482)	tmem11 (ENSHCOG00000014500)	dhrs7b (ENSHCOG00000014515)	CRAMP1 (ENSHCOG00000014566) #20	jpt2 (ENSHCOG00000014579) #21	mapk8ip3 (ENSHCOG00000000406) #22	nme3 (ENSHCOG00000014644) #23	mrps34 (ENSHCOG00000014649) #24	spsb3a (ENSHCOG00000014663) #26	ATP6V0C (ENSHCOG00000014674)	ypel3 (ENSHCOG00000000409)	gdpd3a (ENSHCOG00000014735)	mapk3 (ENSHCOG00000014759)	nudt9 (ENSHCOG00000014765)	ENSHCOG00000014773	rabep2 (ENSHCOG00000014791)	atp2a1 (ENSHCOG00000014828)	NHERF1 (ENSHCOG00000014832)	ENSHCOG00000014859	xylt2 (ENSHCOG00000014899)	ENSHCOG00000014910
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005010854	slc17a7a (ENSMMDG00005010859)	zgc:55558 (ENSMMDG00005010862)	pold1 (ENSMMDG00005010865)	gys1 (ENSMMDG00005010887)	aspdh (ENSMMDG00005011110)	tmem86b (ENSMMDG00005011114)	hspbp1 (ENSMMDG00005011117)	tufm (ENSMMDG00005011123)	KCNJ18 (ENSMMDG00005011153)	natd1 (ENSMMDG00005011154)	tmem11 (ENSMMDG00005011157)	dhrs7b (ENSMMDG00005011160)	CRAMP1 (ENSMMDG00005011165) #20	jpt2 (ENSMMDG00005011178) #21	mapk8ip3 (ENSMMDG00005011182) #22	ENSMMDG00005011186	nme3 (ENSMMDG00005011187) #23	mrps34 (ENSMMDG00005011191) #24	spsb3a (ENSMMDG00005011193) #26	ATP6V0C (ENSMMDG00005011195)	ypel3 (ENSMMDG00005011198)	gdpd3a (ENSMMDG00005011203)	mapk3 (ENSMMDG00005011250)	nudt9 (ENSMMDG00005012631)	ENSMMDG00005012632	rabep2 (ENSMMDG00005012636)	atp2a1 (ENSMMDG00005012645)	NHERF1 (ENSMMDG00005012673)	ENSMMDG00005012719	xylt2 (ENSMMDG00005012720)
Cod	MODERN SPECIES	11	ENSGMOG00000002829	ENSGMOG00000032942	ENSGMOG00000032444	ENSGMOG00000023058	ENSGMOG00000022179	ENSGMOG00000023244	ENSGMOG00000033887	ENSGMOG00000037144	ENSGMOG00000027126	ENSGMOG00000003296	ENSGMOG00000003322	tmem11 (ENSGMOG00000003334)	ENSGMOG00000003340	ENSGMOG00000030019 #20	jpt2 (ENSGMOG00000036879) #21	mapk8ip3 (ENSGMOG00000003414) #22	nme3 (ENSGMOG00000003474) #23	mrps34 (ENSGMOG00000028328) #24	spsb3a (ENSGMOG00000017939) #26	ENSGMOG00000028725	ENSGMOG00000022455	ENSGMOG00000002179	ENSGMOG00000036855	ENSGMOG00000002235	ENSGMOG00000003492	ENSGMOG00000003514	ENSGMOG00000009830	ENSGMOG00000009835	cdr2l (ENSGMOG00000023890)	ENSGMOG00000025476	ENSGMOG00000029031
Protacanthopterygii	ANCESTRAL SPECIES	169											ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a.b	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b	ENSGT00940000160492	ENSGT00940000159252.b.b	ENSGT00940000164396
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	328											ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00550000074873.ob.a.b.a.b	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e
Salmoninae_a	ANCESTRAL SPECIES	141											ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000158268.b.b	ENSGT00940000160972.b	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000154700.e	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a	ENSGT00390000003337.e #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
River trout	MODERN SPECIES	25	rras (ENSSTUG00000023069)	ENSSTUG00000023056	AP2A1 (ENSSTUG00000022231)	prmt1 (ENSSTUG00000021688)	ENSSTUG00000021474	lin7b (ENSSTUG00000021278)	ENSSTUG00000021245	ENSSTUG00000021239	parp14rs1 (ENSSTUG00000021154)	ENSSTUG00000021144	dhrs7b (ENSSTUG00000021126)	tmem11 (ENSSTUG00000021114)	natd1 (ENSSTUG00000021110)	CRAMP1 (ENSSTUG00000021095) #20	jpt2 (ENSSTUG00000021077) #21	mapk8ip3 (ENSSTUG00000020567) #22	nme3 (ENSSTUG00000020510) #23	mrps34 (ENSSTUG00000020498) #24	spsb3a (ENSSTUG00000020487) #26	ATP6V0C (ENSSTUG00000020476)	nog2 (ENSSTUG00000020464)	amdhd2 (ENSSTUG00000020435)	GPRC5C (ENSSTUG00000020419)	ccdc137 (ENSSTUG00000020409)	nme4 (ENSSTUG00000020398)	xpo6 (ENSSTUG00000020221)	antkmt (ENSSTUG00000020193)	hirip3 (ENSSTUG00000020170)	kctd13 (ENSSTUG00000020152)	ENSSTUG00000020144	SEZ6L2 (ENSSTUG00000019961)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000065016	prmt1 (ENSSSAG00000000712)	ENSSSAG00000000496	ENSSSAG00000000534	ENSSSAG00000000406	ENSSSAG00000121130	ENSSSAG00000000320	ENSSSAG00000000286	dhrs7b (ENSSSAG00000000277)	ENSSSAG00000118877	ENSSSAG00000075095	ENSSSAG00000085847 #20	jpt2 (ENSSSAG00000002627) #21	ENSSSAG00000088647	ENSSSAG00000098109	mapk8ip3 (ENSSSAG00000002339) #22	nme3 (ENSSSAG00000002150) #23	mrps34 (ENSSSAG00000002136) #24	ENSSSAG00000096951	ENSSSAG00000100412	spsb3a (ENSSSAG00000002130) #26	ENSSSAG00000102967	ENSSSAG00000035106	ENSSSAG00000002113	ENSSSAG00000002099	ENSSSAG00000002078	ENSSSAG00000117067	ccdc137 (ENSSSAG00000002067)	nme4 (ENSSSAG00000002048)	ENSSSAG00000001798	fam173a (ENSSSAG00000001756)
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000158268.b.b	ENSGT00940000160972.b	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000154700.e	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	49	ENSGT00940000158268.b.b	ENSGT00940000160972.b	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000154700.e	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2924	ENSOTSG00005030118	znf219 (ENSOTSG00005030116)	ENSOTSG00005030115	ENSOTSG00005030114	ENSOTSG00005030113	lin7b (ENSOTSG00005029969)	ENSOTSG00005029967	ENSOTSG00005029966	ENSOTSG00005029965	parp14rs1 (ENSOTSG00005029961)	natd1 (ENSOTSG00005029958)	tmem11 (ENSOTSG00005029957)	dhrs7b (ENSOTSG00005029956)	CRAMP1 (ENSOTSG00005029955) #20	jpt2 (ENSOTSG00005029954) #21	mapk8ip3 (ENSOTSG00005029643) #22	nme3 (ENSOTSG00005029637) #23	mrps34 (ENSOTSG00005029636) #24	spsb3a (ENSOTSG00005029635) #26	ATP6V0C (ENSOTSG00005029627)	nog2 (ENSOTSG00005029626)	amdhd2 (ENSOTSG00005029597)	GPRC5C (ENSOTSG00005029595)	ccdc137 (ENSOTSG00005029593)	nme4 (ENSOTSG00005029591)	xpo6 (ENSOTSG00005028226)	antkmt (ENSOTSG00005028225)	hirip3 (ENSOTSG00005028224)	kctd13 (ENSOTSG00005028222)	SEZ6L2 (ENSOTSG00005028219)	ASPHD2 (ENSOTSG00005028215)
Chinook salmon	MODERN SPECIES	33	nlk1 (ENSOTSG00005032154)	TLCD3B (ENSOTSG00005032153)	mvp (ENSOTSG00005031551)	ENSOTSG00005031546	ENSOTSG00005031545	ENSOTSG00005031542	DOC2A (ENSOTSG00005031541)	ENSOTSG00005031538	ENSOTSG00005031537	parp14rs1 (ENSOTSG00005031534)	natd1 (ENSOTSG00005031531)	tmem11 (ENSOTSG00005031529)	dhrs7b (ENSOTSG00005031528)	CRAMP1 (ENSOTSG00005031526) #20	jpt2 (ENSOTSG00005031524) #21	mapk8ip3 (ENSOTSG00005030621) #22	nme3 (ENSOTSG00005030608) #23	mrps34 (ENSOTSG00005030606) #24	spsb3a (ENSOTSG00005030605) #26	ATP6V0C (ENSOTSG00005034295)	nog2 (ENSOTSG00005034294)	amdhd2 (ENSOTSG00005034259)	GPRC5C (ENSOTSG00005034251)	ccdc137 (ENSOTSG00005034247)	nme4 (ENSOTSG00005034244)	xpo6 (ENSOTSG00005033869)	antkmt (ENSOTSG00005033867)	hirip3 (ENSOTSG00005033866)	kctd13 (ENSOTSG00005033865)	SEZ6L2 (ENSOTSG00005033807)	ASPHD2 (ENSOTSG00005033795)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005031078	AP2A1 (ENSOKIG00005030654)	prmt1 (ENSOKIG00005027306)	ENSOKIG00005027124	ENSOKIG00005027113	ENSOKIG00005027084	lin7b (ENSOKIG00005026987)	ENSOKIG00005026943	ENSOKIG00005026931	parp14rs1 (ENSOKIG00005026786)	natd1 (ENSOKIG00005026764)	tmem11 (ENSOKIG00005026756)	dhrs7b (ENSOKIG00005026739)	CRAMP1 (ENSOKIG00005026710) #20	jpt2 (ENSOKIG00005026684) #21	mapk8ip3 (ENSOKIG00005026395) #22	nme3 (ENSOKIG00005026313) #23	mrps34 (ENSOKIG00005026293) #24	spsb3a (ENSOKIG00005026283) #26	ENSOKIG00005026273	ATP6V0C (ENSOKIG00005026233)	ENSOKIG00005026218	amdhd2 (ENSOKIG00005012381)	GPRC5C (ENSOKIG00005012368)	ccdc137 (ENSOKIG00005012364)	nme4 (ENSOKIG00005012349)	xpo6 (ENSOKIG00005011283)	antkmt (ENSOKIG00005011245)	hirip3 (ENSOKIG00005011236)	ENSOKIG00005011231	kctd13 (ENSOKIG00005011221)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000027569	ENSOMYG00000076201	ENSOMYG00000026079	prmt1 (ENSOMYG00000051801)	ENSOMYG00000023784	ENSOMYG00000023614	ENSOMYG00000023495	ENSOMYG00000053305	ENSOMYG00000023479	ENSOMYG00000023318	ENSOMYG00000023135	tmem11 (ENSOMYG00000060635)	ENSOMYG00000023118	ENSOMYG00000023101 #20	jpt2 (ENSOMYG00000023087) #21	mapk8ip3 (ENSOMYG00000019947) #22	nme3 (ENSOMYG00000019726) #23	mrps34 (ENSOMYG00000019712) #24	spsb3a (ENSOMYG00000019705) #26	ENSOMYG00000019687	ENSOMYG00000019676	ENSOMYG00000019633	ENSOMYG00000019555	ENSOMYG00000019548	nme4 (ENSOMYG00000019542)	ENSOMYG00000018956	antkmt (ENSOMYG00000018851)	hirip3 (ENSOMYG00000018846)	ENSOMYG00000018839	ENSOMYG00000052203	ENSOMYG00000018203
Huchen	MODERN SPECIES	807											natd1 (ENSHHUG00000046065)	tmem11 (ENSHHUG00000046061)	dhrs7b (ENSHHUG00000046054)	CRAMP1 (ENSHHUG00000046050) #20	jpt2 (ENSHHUG00000046044) #21	mapk8ip3 (ENSHHUG00000045754) #22	nme3 (ENSHHUG00000045743) #23	mrps34 (ENSHHUG00000045740) #24	spsb3a (ENSHHUG00000045739) #26	ATP6V0C (ENSHHUG00000045643)	nog2 (ENSHHUG00000045641)	amdhd2 (ENSHHUG00000045624)	GPRC5C (ENSHHUG00000045620)	ccdc137 (ENSHHUG00000045617)	nme4 (ENSHHUG00000045173)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	409	ENSGT01010000222360.D.a.h	ENSGT00390000015505	ENSGT00730000111459	ENSGT00950000183205.b.a.b.a.a.m	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	120	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b
Salmo	ANCESTRAL SPECIES	64	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.a
River trout	MODERN SPECIES	33	pax10 (ENSSTUG00000031563)	rcn3 (ENSSTUG00000031504)	ENSSTUG00000031441	PRR12 (ENSSTUG00000031372)	prrg2 (ENSSTUG00000031352)	ENSSTUG00000031349	rras (ENSSTUG00000031339)	ENSSTUG00000031326	AP2A1 (ENSSTUG00000030784)	prmt1 (ENSSTUG00000029625)	ENSSTUG00000029588	ENSSTUG00000029582	tmem11 (ENSSTUG00000029578)	CRAMP1 (ENSSTUG00000029545) #20	jpt2 (ENSSTUG00000029523) #21	mapk8ip3 (ENSSTUG00000029202) #22	spsb3a (ENSSTUG00000029182) #26	ATP6V0C (ENSSTUG00000029160)	ENSSTUG00000029153	xpo6 (ENSSTUG00000027955)	kctd13 (ENSSTUG00000027924)	SEZ6L2 (ENSSTUG00000027824)	ENSSTUG00000027813	ENSSTUG00000027796	ENSSTUG00000027742	dlx4a (ENSSTUG00000027729)	DLX3 (ENSSTUG00000027720)	PSMD11 (ENSSTUG00000027628)	cdk5r1a (ENSSTUG00000027621)	nsfa (ENSSTUG00000025460)	THRA (ENSSTUG00000025312)
Atlantic salmon	MODERN SPECIES	15	rcn3 (ENSSSAG00000072371)	ENSSSAG00000100366	ENSSSAG00000102493	ENSSSAG00000072339	prrg2 (ENSSSAG00000072333)	rras (ENSSSAG00000072324)	ENSSSAG00000072315	ENSSSAG00000001001	prmt1 (ENSSSAG00000061870)	ENSSSAG00000097370	ENSSSAG00000095953	ENSSSAG00000105245	tmem11 (ENSSSAG00000000270)	ENSSSAG00000061415 #20	jpt2 (ENSSSAG00000095240) #21	mapk8ip3 (ENSSSAG00000053437) #22	ENSSSAG00000114586 #26	ENSSSAG00000095306	ENSSSAG00000106267	ENSSSAG00000102969	ENSSSAG00000052647	ENSSSAG00000045889	ENSSSAG00000045730	HEBP2 (ENSSSAG00000045682)	ENSSSAG00000082098	ENSSSAG00000120584	ENSSSAG00000083996	ENSSSAG00000041588	ENSSSAG00000102800	ENSSSAG00000057762	ENSSSAG00000088009
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	409	ENSGT00390000015505	ENSGT00730000111459	ENSGT00950000183205.b.a.b.a.a.m	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	120	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.a
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000158837.g.b.b	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00940000160492.f	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.b	ENSGT00950000182818.A.o.a	ENSGT00940000164511.C.k.b.b	ENSGT00940000166981.e.a
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000069771	ENSOMYG00000062437	tmg2 (ENSOMYG00000046212)	rras (ENSOMYG00000050105)	ENSOMYG00000046218	ENSOMYG00000046268	prmt1 (ENSOMYG00000024072)	ENSOMYG00000046415	ENSOMYG00000071171	ENSOMYG00000074210	ENSOMYG00000046426	ENSOMYG00000046434	tmem11 (ENSOMYG00000046436)	ENSOMYG00000046444 #20	jpt2 (ENSOMYG00000046462) #21	mapk8ip3 (ENSOMYG00000046505) #22	ENSOMYG00000057237	ENSOMYG00000046560 #26	ENSOMYG00000046565	ENSOMYG00000046626	ENSOMYG00000046695	ENSOMYG00000046697	ENSOMYG00000046701	ENSOMYG00000046708	ENSOMYG00000051375	ENSOMYG00000053810	ENSOMYG00000063379	ENSOMYG00000046756	ENSOMYG00000046850	ENSOMYG00000053599	ENSOMYG00000046919
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000158837.g.b.b	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00940000160492.f	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.a	ENSGT00940000164511.C.k.b.b	ENSGT00940000160609.f.e	ENSGT00940000166981.e.a
Chinook salmon	MODERN SPECIES		tspan4b (ENSOTSG00005007721)	pax10 (ENSOTSG00005007722)	ENSOTSG00005007724	ENSOTSG00005007726	PRR12 (ENSOTSG00005007728)	prrg2 (ENSOTSG00005007797)	rras (ENSOTSG00005007799)	ENSOTSG00005007801	AP2A1 (ENSOTSG00005007807)	prmt1 (ENSOTSG00005008317)	ENSOTSG00005009346	ENSOTSG00005009356	ENSOTSG00005009357	tmem11 (ENSOTSG00005009371)	CRAMP1 (ENSOTSG00005009373) #20	mapk8ip3 (ENSOTSG00005009375) #22	spsb3a (ENSOTSG00005009412) #26	ATP6V0C (ENSOTSG00005009413)	SEZ6L2 (ENSOTSG00005009418)	ENSOTSG00005009594	dlx4a (ENSOTSG00005009595)	DLX3 (ENSOTSG00005009596)	PSMD11 (ENSOTSG00005009598)	cdk5r1a (ENSOTSG00005009599)	nsfa (ENSOTSG00005009601)	THRA (ENSOTSG00005009816)	dusp3b (ENSOTSG00005010730)	prl2 (ENSOTSG00005010731)	ENSOTSG00005010733	tnnt1 (ENSOTSG00005010747)	syt5a (ENSOTSG00005010748)
Coho salmon	MODERN SPECIES	1	ENSOKIG00005025977	PRR12 (ENSOKIG00005026008)	prrg2 (ENSOKIG00005026133)	ENSOKIG00005026144	rras (ENSOKIG00005026149)	ENSOKIG00005026159	AP2A1 (ENSOKIG00005026192)	prmt1 (ENSOKIG00005026770)	ENSOKIG00005029316	ENSOKIG00005029333	ENSOKIG00005029359	tmem11 (ENSOKIG00005029724)	CRAMP1 (ENSOKIG00005029739) #20	jpt2 (ENSOKIG00005029781) #21	ENSOKIG00005029815	mapk8ip3 (ENSOKIG00005029868) #22	SPSB3 (ENSOKIG00005030546) #26	SEZ6L2 (ENSOKIG00005030576)	ENSOKIG00005030686	ENSOKIG00005030742	DLX3 (ENSOKIG00005030773)	PSMD11 (ENSOKIG00005030783)	CDK5R1 (ENSOKIG00005030823)	NSF (ENSOKIG00005030932)	THRA (ENSOKIG00005032167)	dusp3b (ENSOKIG00005032411)	ENSOKIG00005032418	ENSOKIG00005032442	ENSOKIG00005032481	ENSOKIG00005032824	ENSOKIG00005032994
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Coho salmon	MODERN SPECIES	960																ENSOKIG00005041224 #22
Huchen	MODERN SPECIES	9661																ENSHHUG00000007319 #22
Northern pike	MODERN SPECIES	10	ENSELUG00000031333	lin7b (ENSELUG00000005462)	ENSELUG00000005563	ENSELUG00000027172	ENSELUG00000025046	ENSELUG00000034636	ENSELUG00000009811	ENSELUG00000026231	parp14rs1 (ENSELUG00000009798)	ENSELUG00000009784	natd1 (ENSELUG00000009743)	tmem11 (ENSELUG00000009727)	dhrs7b (ENSELUG00000009719)	CRAMP1 (ENSELUG00000009700) #20	jpt2 (ENSELUG00000009677) #21	mapk8ip3 (ENSELUG00000009632) #22	nme3 (ENSELUG00000009505) #23	mrps34 (ENSELUG00000009475) #24	spsb3a (ENSELUG00000009455) #26	ATP6V0C (ENSELUG00000009437)	ENSELUG00000022963	ENSELUG00000033910	nog2 (ENSELUG00000009426)	amdhd2 (ENSELUG00000009397)	ENSELUG00000025997	CAPN15 (ENSELUG00000009318)	GPRC5C (ENSELUG00000009299)	ccdc137 (ENSELUG00000009272)	ENSELUG00000009242	nme4 (ENSELUG00000029985)	xpo6 (ENSELUG00000009159)
Otomorpha	ANCESTRAL SPECIES	50	ENSGT01090000259987.b.b.a.a.a.a	ENSGT00940000156059	ENSGT00950000182984.b.a.a.c.a	ENSGT01050000244842.a.b.b.b	ENSGT00940000157020.g.a	ENSGT00940000157579.a	ENSGT00940000154578.A.c.b.d	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.f	ENSGT01050000245142	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b
Clupeiformes	ANCESTRAL SPECIES	74	ENSGT01090000259987.b.b.a.a.a.a	ENSGT00940000156059	ENSGT00950000182984.b.a.a.c.a	ENSGT01050000244842.a.b.b.b	ENSGT00940000157020.g.a	ENSGT00940000157579.a	ENSGT00940000154578.A.c.b.d	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.a.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00940000158125.b	ENSGT00940000163157.b
Atlantic herring	MODERN SPECIES		mettl2a (ENSCHAG00000010946)	tlk2 (ENSCHAG00000011228)	MRC2 (ENSCHAG00000012256)	rnd2 (ENSCHAG00000012824)	vat1 (ENSCHAG00000012854)	ENSCHAG00000012869	ENSCHAG00000012876	phb (ENSCHAG00000012888)	ZNF652 (ENSCHAG00000012922)	phospho1 (ENSCHAG00000012934)	natd1 (ENSCHAG00000012957)	tmem11 (ENSCHAG00000013010)	dhrs7b (ENSCHAG00000013031)	CRAMP1 (ENSCHAG00000013039) #20	jpt2 (ENSCHAG00000013475) #21	mapk8ip3 (ENSCHAG00000013540) #22	nme3 (ENSCHAG00000016140) #23	mrps34 (ENSCHAG00000016205) #24	spsb3a (ENSCHAG00000016213) #26	atp6v0ca (ENSCHAG00000016256)	lasp1 (ENSCHAG00000016331)	arl5c (ENSCHAG00000016343)	cacnb1 (ENSCHAG00000016427)	RPL19 (ENSCHAG00000016644)	ENSCHAG00000016658	GJC1 (ENSCHAG00000016671)	eftud2 (ENSCHAG00000016684)	gh1 (ENSCHAG00000016971)	ENSCHAG00000017265	SCN4A (ENSCHAG00000017312)	ENSCHAG00000018663
Denticle herring	MODERN SPECIES	17	gpd1a (ENSDCDG00000029865)	si:ch73-141c7.1 (ENSDCDG00000029871)	ENSDCDG00000029903	odad4 (ENSDCDG00000029908)	dnajc7 (ENSDCDG00000029925)	nkiras2 (ENSDCDG00000030166)	vat1 (ENSDCDG00000030171)	phb (ENSDCDG00000030174)	ZNF652 (ENSDCDG00000030177)	phospho1 (ENSDCDG00000030180)	natd1 (ENSDCDG00000030184)	tmem11 (ENSDCDG00000030186)	dhrs7b (ENSDCDG00000030190)	CRAMP1 (ENSDCDG00000030204) #20	jpt2 (ENSDCDG00000030271) #21	mapk8ip3 (ENSDCDG00000030384) #22	odad4 (ENSDCDG00000032542)	dnajc7 (ENSDCDG00000032545)	syt9b (ENSDCDG00000032546)	PPFIBP2 (ENSDCDG00000032571)	sb:cb470 (ENSDCDG00000032760)	cyb5r2 (ENSDCDG00000032761)	PLEKHA5 (ENSDCDG00000032778)	ENSDCDG00000032812	ENSDCDG00000032814	ENSDCDG00000032817	RELN (ENSDCDG00000032823)	LHFPL3 (ENSDCDG00000032833)	ENSDCDG00000032838	ENSDCDG00000032867	tp53i11b (ENSDCDG00000032869)
Otophysi	ANCESTRAL SPECIES	11								ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.f	ENSGT01050000245142	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b
Characiphysae	ANCESTRAL SPECIES	11	ENSGT00940000168169	ENSGT00390000012014.B	ENSGT00950000183184.b.b	ENSGT00940000160724	ENSGT00940000157015.j	ENSGT00940000160612	ENSGT00940000158410.g.a.a	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b.d	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.f	ENSGT01050000245142	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b
Channel catfish	MODERN SPECIES	11	cq072 (ENSIPUG00000024188)	TCAP (ENSIPUG00000024186)	Syngr1 (ENSIPUG00000024185)	FAM171A2 (ENSIPUG00000024184)	ITGA2B (ENSIPUG00000023401)	CRHR1 (ENSIPUG00000023385)	adcy10 (ENSIPUG00000023367)	phb (ENSIPUG00000023355)	Znf652 (ENSIPUG00000023347)	phospho1 (ENSIPUG00000023338)	natd1 (ENSIPUG00000023335)	tmem11 (ENSIPUG00000023333)	dhrs7b (ENSIPUG00000023327)	CRAMP1 (ENSIPUG00000023314) #20	jpt2 (ENSIPUG00000023303) #21	mapk8ip3 (ENSIPUG00000023279) #22	nme3 (ENSIPUG00000023274) #23	MRPS34 (ENSIPUG00000023268) #24	spsb3a (ENSIPUG00000023254) #26	atp6v0ca (ENSIPUG00000023248)	ENSIPUG00000023247	lasp1 (ENSIPUG00000023239)	arl5c (ENSIPUG00000023232)	cacnb1 (ENSIPUG00000023224)	ENSIPUG00000023221	rpl19 (ENSIPUG00000023215)	GJC1 (ENSIPUG00000023213)	Eftud2 (ENSIPUG00000023182)	ENSIPUG00000023179	ENSIPUG00000023169	ENSIPUG00000023168
Characiphysae_b	ANCESTRAL SPECIES	30	ENSGT00940000168169	ENSGT00390000012014.B	ENSGT00950000183184.b.b	ENSGT00940000160724	ENSGT00940000157015.j	ENSGT00940000160612	ENSGT00940000158410.g.a.a	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b.d	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00940000158125.b
Characoidei	ANCESTRAL SPECIES	25	ENSGT00940000168169	ENSGT00390000012014.B	ENSGT00950000183184.b.b	ENSGT00940000160724	ENSGT00940000157015.j	ENSGT00940000160612	ENSGT00940000158410.g.a.a	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b.d	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00940000158125.b
Red-bellied piranha	MODERN SPECIES	12	ENSPNAG00000013757	tcap (ENSPNAG00000013730)	syngr1a (ENSPNAG00000013720)	FAM171A2 (ENSPNAG00000002894)	itga2b (ENSPNAG00000002886)	ENSPNAG00000013507	CRHR1 (ENSPNAG00000012977)	phb (ENSPNAG00000012951)	ZNF652 (ENSPNAG00000012933)	phospho1 (ENSPNAG00000012917)	natd1 (ENSPNAG00000012898)	tmem11 (ENSPNAG00000012896)	dhrs7b (ENSPNAG00000012890)	CRAMP1 (ENSPNAG00000012883) #20	jpt2 (ENSPNAG00000012798) #21	mapk8ip3 (ENSPNAG00000002393) #22	nme3 (ENSPNAG00000012688) #23	mrps34 (ENSPNAG00000012661) #24	spsb3a (ENSPNAG00000012656) #26	atp6v0ca (ENSPNAG00000012641)	ENSPNAG00000012627	lasp1 (ENSPNAG00000012620)	arl5c (ENSPNAG00000002310)	cacnb1 (ENSPNAG00000012580)	rpl19 (ENSPNAG00000002294)	ENSPNAG00000012530	GJC1 (ENSPNAG00000012502)	eftud2 (ENSPNAG00000012490)	ENSPNAG00000002224	ENSPNAG00000012357	eps8l1a (ENSPNAG00000012317)
Mexicana tetra	MODERN SPECIES	11	ENSAMXG00000029723	fgf21 (ENSAMXG00000040056)	ENSAMXG00000014623	ENSAMXG00000039277	ENSAMXG00000036029	ENSAMXG00000041690	ENSAMXG00000039703	phb (ENSAMXG00000036224)	ZNF652 (ENSAMXG00000000691)	phospho1 (ENSAMXG00000025400)	natd1 (ENSAMXG00000043889)	tmem11 (ENSAMXG00000035004)	dhrs7b (ENSAMXG00000034515)	CRAMP1 (ENSAMXG00000000638) #20	jpt2 (ENSAMXG00000038798) #21	mapk8ip3 (ENSAMXG00000032278) #22	nme3 (ENSAMXG00000043728) #23	nme3 (ENSAMXG00000037698) #23	mrps34 (ENSAMXG00000000602) #24	spsb3a (ENSAMXG00000035409) #26	atp6v0ca (ENSAMXG00000032350)	lasp1 (ENSAMXG00000040421)	arl5c (ENSAMXG00000031771)	cacnb1 (ENSAMXG00000031925)	rpl19 (ENSAMXG00000043666)	ENSAMXG00000038712	GJC1 (ENSAMXG00000033049)	eftud2 (ENSAMXG00000000568)	ENSAMXG00000025399	ENSAMXG00000041549	eps8l1a (ENSAMXG00000000556)
Electric eel	MODERN SPECIES	225								phb (ENSEEEG00000015951)	ZNF652 (ENSEEEG00000015945)	phospho1 (ENSEEEG00000015942)	natd1 (ENSEEEG00000015941)	tmem11 (ENSEEEG00000015939)	dhrs7b (ENSEEEG00000015936)	CRAMP1 (ENSEEEG00000015931) #20	jpt2 (ENSEEEG00000015927) #21	mapk8ip3 (ENSEEEG00000015925) #22	nme3 (ENSEEEG00000015920) #23	mrps34 (ENSEEEG00000015917) #24	spsb3a (ENSEEEG00000015916) #26	atp6v0ca (ENSEEEG00000015890)	lasp1 (ENSEEEG00000015887)	arl5c (ENSEEEG00000015883)	cacnb1 (ENSEEEG00000015875)	ENSEEEG00000015873	ENSEEEG00000015872	GJC1 (ENSEEEG00000015871)	eftud2 (ENSEEEG00000015679)	ENSEEEG00000015665	ENSEEEG00000015664	ccdc43 (ENSEEEG00000015663)	ENSEEEG00000015662
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00530000064242.a	ENSGT00940000159141.j.a	ENSGT00940000154308.A.a.a.a	ENSGT00990000213837	ENSGT00940000161725.h	ENSGT00940000161103.a	ENSGT00390000008969	ENSGT00950000183070.a.b.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT01090000260189.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	24	ENSGT00390000007119.a	ENSGT00390000015229.cb	ENSGT00530000064242.a.d	ENSGT00940000159141.j.a.a	ENSGT00940000161103.a.d	ENSGT00390000008969.l	ENSGT00950000183070.a.b.b.b	ENSGT00940000157416.e	ENSGT00390000007741.a.p.d	ENSGT00390000014840.a.c.b	ENSGT00390000014840.a.c.a	ENSGT00390000006617.c.a	ENSGT00940000158171.g	ENSGT00390000003337.h #20	ENSGT00390000007652.f #21	ENSGT00940000153496.a.a.s #22	ENSGT00940000161283.h #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.f #26	ENSGT00550000074873.nb.b.b.b	ENSGT00940000154775.c.a.a.b.d	ENSGT00940000167269.d	ENSGT00950000182837.a.b.b.e	ENSGT00390000012628.k.e.b.b	ENSGT01030000234535.A.g.b	ENSGT01090000260005.a.a.a.b.a.a.b.b.d	ENSGT00940000155685.q	ENSGT01030000234586.A.a.a.b.i.a	ENSGT00940000155286.m.b.b	ENSGT01090000260189.b	ENSGT00940000158125.b.h
Goldfish	MODERN SPECIES	20	DOC2A (ENSCARG00000024127)	ENSCARG00000024472	ENSCARG00000024477	zgc:66474 (ENSCARG00000024483)	ENSCARG00000024488	ENSCARG00000024495	mvp (ENSCARG00000024519)	phb (ENSCARG00000024622)	ZNF652 (ENSCARG00000024640)	phospho1 (ENSCARG00000024658)	natd1 (ENSCARG00000024663)	tmem11 (ENSCARG00000024668)	dhrs7b (ENSCARG00000024675)	CRAMP1 (ENSCARG00000024690) #20	jpt2 (ENSCARG00000024924) #21	mapk8ip3 (ENSCARG00000025045) #22	nme3 (ENSCARG00000029401) #23	mrps34 (ENSCARG00000029434) #24	spsb3a (ENSCARG00000029446) #26	atp6v0ca (ENSCARG00000029480)	lasp1 (ENSCARG00000029508)	arl5c (ENSCARG00000029532)	cacnb1 (ENSCARG00000029661)	rpl19 (ENSCARG00000031862)	ENSCARG00000031871	GJC1 (ENSCARG00000031874)	ENSCARG00000031881	ENSCARG00000031890	eps8l1a (ENSCARG00000031906)	ENSCARG00000031960	slc17a7a (ENSCARG00000032023)
Cyprininae_a	ANCESTRAL SPECIES	12	ENSGT00940000159141.j.a.a	ENSGT00940000154308.A.a.a.a	ENSGT01100000263491.a.b.b.c.a.a.b	ENSGT00940000161103.a.d	ENSGT00390000008969.l	ENSGT00950000183070.a.b.b.b	ENSGT00940000157416.e	ENSGT00390000007741.a.p.d	ENSGT00390000014840.a.c.a	ENSGT00390000006617.c.a	ENSGT00390000014840.a.c.b	ENSGT00390000006617.d	ENSGT00940000158171.g	ENSGT00390000003337.h #20	ENSGT00390000007652.f #21	ENSGT00940000153496.a.a.s #22	ENSGT00940000161283.h #23	ENSGT01030000234629.E.a.b.e #26	ENSGT00550000074873.nb.b.b.a	ENSGT00940000154775.c.a.a.b.c	ENSGT00940000167269.c	ENSGT00950000182837.a.b.b.f	ENSGT00390000012628.k.e.b.a	ENSGT01030000234535.A.g.a	ENSGT01090000260005.a.a.a.b.a.a.b.b.c	ENSGT00940000155685.r	ENSGT01030000234586.A.a.a.b.j	ENSGT01030000234586.A.a.a.b.i.b	ENSGT00940000155286.m.b.a	ENSGT01090000260189.b	ENSGT00940000158125.b.g
Common carp reference	MODERN SPECIES	1	nupr1b (ENSCCRG00000024365)	ENSCCRG00000063618	ENSCCRG00000064469	zgc:66474 (ENSCCRG00000071865)	ENSCCRG00000035149	ENSCCRG00000035170	mvp (ENSCCRG00000035425)	phb (ENSCCRG00000075098)	ENSCCRG00000059749	phospho1 (ENSCCRG00000068879)	natd1 (ENSCCRG00000077389)	tmem11 (ENSCCRG00000080658)	dhrs7b (ENSCCRG00000027563)	ENSCCRG00000051559 #20	jpt2 (ENSCCRG00000035183) #21	mapk8ip3 (ENSCCRG00000034016) #22	nme3 (ENSCCRG00000070457) #23	spsb3a (ENSCCRG00000059803) #26	atp6v0ca (ENSCCRG00000075293)	lasp1 (ENSCCRG00000054083)	ENSCCRG00000034218	arl5c (ENSCCRG00000076388)	cacnb1 (ENSCCRG00000034220)	rpl19 (ENSCCRG00000034203)	ENSCCRG00000041024	ENSCCRG00000069271	eftud2 (ENSCCRG00000054480)	ENSCCRG00000066902	ENSCCRG00000070610	ENSCCRG00000000120	eps8l1a (ENSCCRG00000000171)
Golden-line barbel	MODERN SPECIES	26	spns1 (ENSSGRG00000031309)	sgf29 (ENSSGRG00000031354)	nupr1b (ENSSGRG00000031362)	DOC2A (ENSSGRG00000031364)	ENSSGRG00000031365	ENSSGRG00000031369	ENSSGRG00000031370	ENSSGRG00000031372	mvp (ENSSGRG00000031376)	ENSSGRG00000031424	ENSSGRG00000031425	natd1 (ENSSGRG00000031426)	tmem11 (ENSSGRG00000031427)	dhrs7b (ENSSGRG00000031428)	CRAMP1 (ENSSGRG00000031433) #20	mapk8ip3 (ENSSGRG00000031474) #22	nme3 (ENSSGRG00000033555) #23	spsb3a (ENSSGRG00000033558) #26	atp6v0ca (ENSSGRG00000033559)	lasp1 (ENSSGRG00000033562)	arl5c (ENSSGRG00000033563)	cacnb1 (ENSSGRG00000033576)	rpl19 (ENSSGRG00000033711)	ENSSGRG00000033888	ENSSGRG00000033890	GJC1 (ENSSGRG00000033891)	eftud2 (ENSSGRG00000033895)	ENSSGRG00000034578	ENSSGRG00000034579	eps8l1a (ENSSGRG00000034580)	ENSSGRG00000034589
Cyprininae	ANCESTRAL SPECIES	901												ENSGT00390000006617.c.b	ENSGT00940000158171.h	ENSGT00390000003337.g #20	ENSGT00390000007652.e #21	ENSGT00940000153496.a.a.t #22	ENSGT00940000161283.g #23
Goldfish	MODERN SPECIES	22	sgf29 (ENSCARG00000017126)	nupr1b (ENSCARG00000017117)	DOC2A (ENSCARG00000017058)	ENSCARG00000017027	ENSCARG00000017019	ENSCARG00000017008	mvp (ENSCARG00000016682)	phb (ENSCARG00000016637)	ENSCARG00000016623	phospho1 (ENSCARG00000016616)	natd1 (ENSCARG00000016601)	tmem11 (ENSCARG00000016591)	dhrs7b (ENSCARG00000016554)	CRAMP1 (ENSCARG00000016195) #20	jpt2 (ENSCARG00000016162) #21	mapk8ip3 (ENSCARG00000011560) #22	nme3 (ENSCARG00000011347) #23	spsb3a (ENSCARG00000011332) #26	atp6v0ca (ENSCARG00000011279)	lasp1 (ENSCARG00000011253)	arl5c (ENSCARG00000011235)	cacnb1 (ENSCARG00000008976)	rpl19 (ENSCARG00000008872)	ENSCARG00000008865	GJC1 (ENSCARG00000008859)	eftud2 (ENSCARG00000008689)	ENSCARG00000008676	ENSCARG00000008666	eps8l1a (ENSCARG00000008623)	slc17a7a (ENSCARG00000008524)	zgc:55558 (ENSCARG00000008505)
Cyprininae_a	ANCESTRAL SPECIES	113	ENSGT00390000015229.bb	ENSGT00530000064242.a.c	ENSGT00940000159141.j.a.b	ENSGT01100000263505.b.b.a.a.a.b	ENSGT00940000161725.h.a	ENSGT01100000263533.a	ENSGT00940000161103.a.c	ENSGT00390000008969.k	ENSGT00950000183070.a.b.b.a	ENSGT00940000157416.f	ENSGT00390000007741.a.p.c	ENSGT00390000006617.c.b	ENSGT00940000158171.h	ENSGT00390000003337.g #20	ENSGT00390000007652.e #21	ENSGT00940000153496.a.a.t #22	ENSGT00940000161283.g #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.f #26	ENSGT00550000074873.nb.b.a	ENSGT00940000154775.c.a.a.b.d	ENSGT00940000167269.d	ENSGT00950000182837.a.b.b.e	ENSGT00390000012628.k.e.b.b	ENSGT01030000234535.A.g.b	ENSGT01090000260005.a.a.a.b.a.a.b.b.d	ENSGT00940000155685.q	ENSGT01030000234586.A.a.a.b.i.a	ENSGT00940000155286.m.b.b	ENSGT00940000158125.b.h	ENSGT00940000163157.b.c
Common carp reference	MODERN SPECIES	3	nupr1b (ENSCCRG00000063606)	sgf29 (ENSCCRG00000074953)	ENSCCRG00000068744	ENSCCRG00000035159	ENSCCRG00000035137	ENSCCRG00000043521	mvp (ENSCCRG00000063252)	phb (ENSCCRG00000071295)	ENSCCRG00000027597	phospho1 (ENSCCRG00000072193)	natd1 (ENSCCRG00000064621)	tmem11 (ENSCCRG00000079334)	dhrs7b (ENSCCRG00000035210)	ENSCCRG00000035189 #20	jpt2 (ENSCCRG00000024677) #21	mapk8ip3 (ENSCCRG00000024729) #22	nme3 (ENSCCRG00000077594) #23	mrps34 (ENSCCRG00000067803) #24	spsb3a (ENSCCRG00000081756) #26	atp6v0ca (ENSCCRG00000034043)	lasp1 (ENSCCRG00000034071)	arl5c (ENSCCRG00000055814)	cacnb1 (ENSCCRG00000034181)	rpl19 (ENSCCRG00000060947)	ENSCCRG00000080364	ENSCCRG00000064650	eftud2 (ENSCCRG00000052325)	ENSCCRG00000034237	ENSCCRG00000049491	eps8l1a (ENSCCRG00000049480)	ENSCCRG00000049466
Golden-line barbel	MODERN SPECIES	450	ENSSGRG00000045177	DOC2A (ENSSGRG00000045179)	ENSSGRG00000045180	zgc:66474 (ENSSGRG00000045183)	ENSSGRG00000045185	ENSSGRG00000045186	mvp (ENSSGRG00000045187)	phb (ENSSGRG00000045225)	ENSSGRG00000045231	ENSSGRG00000045232	natd1 (ENSSGRG00000045234)	tmem11 (ENSSGRG00000045235)	dhrs7b (ENSSGRG00000045236)	CRAMP1 (ENSSGRG00000045237) #20	ENSSGRG00000045274	mapk8ip3 (ENSSGRG00000045285) #22	spsb3a (ENSSGRG00000046057) #26	atp6v0ca (ENSSGRG00000046060)	lasp1 (ENSSGRG00000046069)	arl5c (ENSSGRG00000046072)	cacnb1 (ENSSGRG00000046073)	ENSSGRG00000046075	acsl3b (ENSSGRG00000046095)	scg2b (ENSSGRG00000047251)	ap1s3b (ENSSGRG00000047252)	scg2b (ENSSGRG00000047254)	ENSSGRG00000047255	ENSSGRG00000047256
Zebrafish	MODERN SPECIES	18	nupr1b (ENSDARG00000094557)	DOC2A (ENSDARG00000078736)	ENSDARG00000092816	ENSDARG00000094328	zgc:66474 (ENSDARG00000026453)	zgc:66443 (ENSDARG00000057707)	mvp (ENSDARG00000021242)	phb (ENSDARG00000057414)	ZNF652 (ENSDARG00000062302)	phospho1 (ENSDARG00000008403)	natd1 (ENSDARG00000038281)	tmem11 (ENSDARG00000070866)	dhrs7b (ENSDARG00000075726)	CRAMP1 (ENSDARG00000079616) #20	jpt2 (ENSDARG00000034427) #21	mapk8ip3 (ENSDARG00000062531) #22	nme3 (ENSDARG00000100990) #23	mrps34 (ENSDARG00000057910) #24	spsb3a (ENSDARG00000077737) #26	atp6v0ca (ENSDARG00000057853)	ENSDARG00000097322	lasp1 (ENSDARG00000057867)	arl5c (ENSDARG00000035719)	cacnb1 (ENSDARG00000002167)	rpl19 (ENSDARG00000013307)	ENSDARG00000093569	ENSDARG00000021195	eftud2 (ENSDARG00000012261)	ENSDARG00000062618	ENSDARG00000073998	eps8l1a (ENSDARG00000057984)
Spotted gar	MODERN SPECIES	651	rasd1 (ENSLOCG00000001864)	MED9 (ENSLOCG00000001878)	NT5M (ENSLOCG00000001889)	COPS3 (ENSLOCG00000001909)	MPRIP (ENSLOCG00000001927)	ENSLOCG00000001973	usp22 (ENSLOCG00000001994)	KCNJ18 (ENSLOCG00000018090)	MAP2K3 (ENSLOCG00000002029)	natd1 (ENSLOCG00000002050)	tmem11 (ENSLOCG00000002065)	dhrs7b (ENSLOCG00000002078)	CRAMP1 (ENSLOCG00000002093) #20	jpt2 (ENSLOCG00000002135) #21	ENSLOCG00000002174	mapk8ip3 (ENSLOCG00000002193) #22	nme3 (ENSLOCG00000002228) #23	mrps34 (ENSLOCG00000002240) #24	EME2 (ENSLOCG00000002257) #25	spsb3a (ENSLOCG00000002279) #26	nubp2 (ENSLOCG00000002301) #27	ENSLOCG00000002318	ENSLOCG00000002334	ENSLOCG00000002363	coro7 (ENSLOCG00000002377)	vasna (ENSLOCG00000018091)	dnaja3b (ENSLOCG00000002434)	hmox2a (ENSLOCG00000002449)	CFAP70 (ENSLOCG00000002464)	ENSLOCG00000002506	ENSLOCG00000018092
Reedfish	MODERN SPECIES	2	rps15a (ENSECRG00000013979)	xylt1 (ENSECRG00000013951)	NOMO1 (ENSECRG00000013880)	TMC7 (ENSECRG00000013831)	TMC5 (ENSECRG00000013784)	mettl26 (ENSECRG00000013750)	WFIKKN1 (ENSECRG00000013716)	rab40c (ENSECRG00000013693)	ENSECRG00000013673	cyp2k19 (ENSECRG00000013656)	ndufb11 (ENSECRG00000013644)	CRAMP1 (ENSECRG00000013588) #20	ENSECRG00000013544	jpt2 (ENSECRG00000013500) #21	ENSECRG00000013462	mapk8ip3 (ENSECRG00000013413) #22	nme3 (ENSECRG00000013386) #23	telo2 (ENSECRG00000013350) #17	tmem204 (ENSECRG00000013331) #19	IFT140 (ENSECRG00000013300) #18	ENSECRG00000013257	ENSECRG00000013248	ENSECRG00000013234	ENSECRG00000013221	TSC2 (ENSECRG00000013024)	NTHL1 (ENSECRG00000012987)	NHERF2 (ENSECRG00000012973)	get4 (ENSECRG00000012932)	ENSECRG00000012910	sun1b (ENSECRG00000012868)	DNAAF5 (ENSECRG00000012779)
Elephant shark	MODERN SPECIES	1616									SYT6 (ENSCMIG00000008747)	ENSCMIG00000008754	DHRS4 (ENSCMIG00000008759)	KCNJ14 (ENSCMIG00000008766)	ENSCMIG00000008768	ENSCMIG00000008773 #21	ENSCMIG00000008779	mapk8ip3 (ENSCMIG00000008895) #22	NME3 (ENSCMIG00000009215) #23	rhbdl1 (ENSCMIG00000009217)	stub1 (ENSCMIG00000009221)	fbxl16 (ENSCMIG00000009223)	ENSCMIG00000009224	CRAMP1 (ENSCMIG00000009227) #20	wdr24 (ENSCMIG00000009228)	galr2b (ENSCMIG00000009231)	smim22 (ENSCMIG00000009233)	rogdi (ENSCMIG00000009239)	glyr1 (ENSCMIG00000009245)	UBN1 (ENSCMIG00000009254)	ppl (ENSCMIG00000009260)	ENSCMIG00000009261	ENSCMIG00000009263