Chordata	ANCESTRAL SPECIES																	ENSGT00940000153496 #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a #22
Gnathostomata	ANCESTRAL SPECIES	1184																ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23
Euteleostomi	ANCESTRAL SPECIES	163														ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000173220	ENSGT00390000012605	ENSGT00940000158312	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00530000063870.b	ENSGT00530000063870.a.b
Sarcopterygii	ANCESTRAL SPECIES	248													ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396
Tetrapoda	ANCESTRAL SPECIES	53	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396
Amniota	ANCESTRAL SPECIES	11	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT01010000222629	ENSGT00930000151045
Mammalia	ANCESTRAL SPECIES	43	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.h	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a
Theria	ANCESTRAL SPECIES	10	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a
Eutheria	ANCESTRAL SPECIES	23	ENSGT00940000163349	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a	ENSGT00940000153095.g.b.a.a.b
Primates	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Haplorrhini	ANCESTRAL SPECIES	24	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Simiiformes	ANCESTRAL SPECIES	19	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Hominidae	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.b.a	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b
Orangutan	MODERN SPECIES	7	TPSD1 (ENSPPYG00000006943) #7	ENSPPYG00000035138 #8	TSR3 (ENSPPYG00000034811) #9	GNPTG (ENSPPYG00000006949) #10	UNKL (ENSPPYG00000006950) #11	UQCC4 (ENSPPYG00000006951) #12	PERCC1 (ENSPPYG00000006952) #13	CCDC154 (ENSPPYG00000006953) #14	CLCN7 (ENSPPYG00000006954) #15	PTX4 (ENSPPYG00000035702) #16	TELO2 (ENSPPYG00000006955) #17	IFT140 (ENSPPYG00000006956) #18	TMEM204 (ENSPPYG00000006957) #19	CRAMP1 (ENSPPYG00000006958) #20	JPT2 (ENSPPYG00000006959) #21	MAPK8IP3 (ENSPPYG00000006960) #22	NME3 (ENSPPYG00000032952) #23	MRPS34 (ENSPPYG00000006962) #24	EME2 (ENSPPYG00000035411) #25	SPSB3 (ENSPPYG00000006963) #26	ENSPPYG00000006964 #27	IGFALS (ENSPPYG00000006965) #28	HAGH (ENSPPYG00000006966) #29	FAHD1 (ENSPPYG00000037970) #30	ENSPPYG00000006968 #31	HS3ST6 (ENSPPYG00000006971) #32	MSRB1 (ENSPPYG00000041142) #33	ENSPPYG00000029764 #34	NDUFB10 (ENSPPYG00000006974) #35	ENSPPYG00000030067 #36	TBL3 (ENSPPYG00000006977) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	24	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Gorilla	MODERN SPECIES	7	BAIAP3 (ENSGGOG00000011646)	TSR3 (ENSGGOG00000011679) #9	GNPTG (ENSGGOG00000016320) #10	ENSGGOG00000040860	UNKL (ENSGGOG00000014915) #11	UQCC4 (ENSGGOG00000036674) #12	PERCC1 (ENSGGOG00000014929) #13	CCDC154 (ENSGGOG00000014932) #14	ENSGGOG00000014942 #15	PTX4 (ENSGGOG00000005872) #16	TELO2 (ENSGGOG00000005878) #17	IFT140 (ENSGGOG00000005889) #18	TMEM204 (ENSGGOG00000005903) #19	CRAMP1 (ENSGGOG00000006181) #20	JPT2 (ENSGGOG00000006200) #21	MAPK8IP3 (ENSGGOG00000006208) #22	NME3 (ENSGGOG00000006229) #23	MRPS34 (ENSGGOG00000006234) #24	EME2 (ENSGGOG00000006238) #25	SPSB3 (ENSGGOG00000006245) #26	NUBP2 (ENSGGOG00000006254) #27	IGFALS (ENSGGOG00000006268) #28	HAGH (ENSGGOG00000012252) #29	FAHD1 (ENSGGOG00000024697) #30	ENSGGOG00000012261 #31	HS3ST6 (ENSGGOG00000009361) #32	ENSGGOG00000022794 #33	RPL3L (ENSGGOG00000009364) #34	NDUFB10 (ENSGGOG00000009367) #35	RPS2 (ENSGGOG00000009371)	TBL3 (ENSGGOG00000009378) #37
Homo/Pan group	ANCESTRAL SPECIES	23	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Human	MODERN SPECIES	7	UBE2I (ENSG00000103275) #8	BAIAP3 (ENSG00000007516)	TSR3 (ENSG00000007520) #9	GNPTG (ENSG00000090581) #10	UNKL (ENSG00000059145) #11	UQCC4 (ENSG00000174109) #12	PERCC1 (ENSG00000284395) #13	CCDC154 (ENSG00000197599) #14	CLCN7 (ENSG00000103249) #15	PTX4 (ENSG00000251692) #16	TELO2 (ENSG00000100726) #17	IFT140 (ENSG00000187535) #18	TMEM204 (ENSG00000131634) #19	CRAMP1 (ENSG00000007545) #20	JPT2 (ENSG00000206053) #21	MAPK8IP3 (ENSG00000138834) #22	NME3 (ENSG00000103024) #23	MRPS34 (ENSG00000074071) #24	EME2 (ENSG00000197774) #25	SPSB3 (ENSG00000162032) #26	NUBP2 (ENSG00000095906) #27	IGFALS (ENSG00000099769) #28	HAGH (ENSG00000063854) #29	FAHD1 (ENSG00000180185) #30	MEIOB (ENSG00000162039) #31	ENSG00000289722 #31	HS3ST6 (ENSG00000162040) #32	MSRB1 (ENSG00000198736) #33	RPL3L (ENSG00000140986) #34	NDUFB10 (ENSG00000140990) #35	RPS2 (ENSG00000140988)
Pan	ANCESTRAL SPECIES	28	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452.m #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00530000063647.A.a
Bonobo	MODERN SPECIES	7	BAIAP3 (ENSPPAG00000029908)	ENSPPAG00000032379 #9	GNPTG (ENSPPAG00000040528) #10	ENSPPAG00000032844	UNKL (ENSPPAG00000043365) #11	UQCC4 (ENSPPAG00000035290) #12	PERCC1 (ENSPPAG00000011265) #13	CCDC154 (ENSPPAG00000039800) #14	CLCN7 (ENSPPAG00000035677) #15	PTX4 (ENSPPAG00000012282) #16	TELO2 (ENSPPAG00000031847) #17	IFT140 (ENSPPAG00000041233) #18	TMEM204 (ENSPPAG00000033773) #19	CRAMP1 (ENSPPAG00000036103) #20	JPT2 (ENSPPAG00000034952) #21	MAPK8IP3 (ENSPPAG00000034790) #22	NME3 (ENSPPAG00000030073) #23	MRPS34 (ENSPPAG00000033749) #24	EME2 (ENSPPAG00000035754) #25	SPSB3 (ENSPPAG00000023101) #26	ENSPPAG00000029613 #27	IGFALS (ENSPPAG00000025910) #28	ENSPPAG00000032337 #31	HS3ST6 (ENSPPAG00000029952) #32	ENSPPAG00000031640 #33	RPL3L (ENSPPAG00000039317) #34	NDUFB10 (ENSPPAG00000040038) #35	ENSPPAG00000028366	RNF151 (ENSPPAG00000035993)	TBL3 (ENSPPAG00000041939) #37	ENSPPAG00000030899
Chimpanzee	MODERN SPECIES	7	BAIAP3 (ENSPTRG00000007588)	TSR3 (ENSPTRG00000007589) #9	GNPTG (ENSPTRG00000007590) #10	ENSPTRG00000049802	UNKL (ENSPTRG00000007591) #11	UQCC4 (ENSPTRG00000007592) #12	PERCC1 (ENSPTRG00000052156) #13	CCDC154 (ENSPTRG00000023886) #14	CLCN7 (ENSPTRG00000007594) #15	PTX4 (ENSPTRG00000007595) #16	TELO2 (ENSPTRG00000007596) #17	IFT140 (ENSPTRG00000007600) #18	TMEM204 (ENSPTRG00000031314) #19	CRAMP1 (ENSPTRG00000007602) #20	JPT2 (ENSPTRG00000034459) #21	MAPK8IP3 (ENSPTRG00000007603) #22	NME3 (ENSPTRG00000007605) #23	MRPS34 (ENSPTRG00000007606) #24	EME2 (ENSPTRG00000007607) #25	SPSB3 (ENSPTRG00000007608) #26	NUBP2 (ENSPTRG00000007609) #27	IGFALS (ENSPTRG00000007610) #28	HAGH (ENSPTRG00000007611) #29	FAHD1 (ENSPTRG00000046890) #30	MEIOB (ENSPTRG00000007612) #31	MSRB1 (ENSPTRG00000024355) #33	RPL3L (ENSPTRG00000007617) #34	NDUFB10 (ENSPTRG00000007618) #35	ENSPTRG00000052871	RNF151 (ENSPTRG00000007620)	TBL3 (ENSPTRG00000007621) #37
Gibbon	MODERN SPECIES	8	UBE2I (ENSNLEG00000008525) #8	BAIAP3 (ENSNLEG00000008558)	ENSNLEG00000029520 #9	ENSNLEG00000008616 #10	UNKL (ENSNLEG00000008624) #11	UQCC4 (ENSNLEG00000034051) #12	ENSNLEG00000030883 #13	CCDC154 (ENSNLEG00000008642) #14	ENSNLEG00000008654 #15	ENSNLEG00000028593 #16	TELO2 (ENSNLEG00000008667) #17	TMEM204 (ENSNLEG00000008742) #19	IFT140 (ENSNLEG00000008705) #18	CRAMP1 (ENSNLEG00000008491) #20	ENSNLEG00000029033	MAPK8IP3 (ENSNLEG00000026706) #22	NME3 (ENSNLEG00000008754) #23	MRPS34 (ENSNLEG00000008766) #24	EME2 (ENSNLEG00000008769) #25	SPSB3 (ENSNLEG00000031220) #26	NUBP2 (ENSNLEG00000008782) #27	ENSNLEG00000030061	ENSNLEG00000008791 #29	FAHD1 (ENSNLEG00000008809) #30	ENSNLEG00000008811 #31	ENSNLEG00000008834 #33	RPL3L (ENSNLEG00000008850) #34	NDUFB10 (ENSNLEG00000008867) #35	RPS2 (ENSNLEG00000008877)	RNF151 (ENSNLEG00000008887)	TBL3 (ENSNLEG00000008889) #37
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Olive baboon	MODERN SPECIES	9	ENSPANG00000017869	ENSPANG00000017868	UBE2I (ENSPANG00000030254) #8	TSR3 (ENSPANG00000006419) #9	GNPTG (ENSPANG00000016391) #10	UNKL (ENSPANG00000015754) #11	UQCC4 (ENSPANG00000021088) #12	CCDC154 (ENSPANG00000019550) #14	CLCN7 (ENSPANG00000019552) #15	PTX4 (ENSPANG00000021087) #16	TELO2 (ENSPANG00000026315) #17	TMEM204 (ENSPANG00000018087) #19	IFT140 (ENSPANG00000018206) #18	CRAMP1 (ENSPANG00000017496) #20	JPT2 (ENSPANG00000016521) #21	MAPK8IP3 (ENSPANG00000018354) #22	NME3 (ENSPANG00000017598) #23	MRPS34 (ENSPANG00000020905) #24	EME2 (ENSPANG00000015752) #25	SPSB3 (ENSPANG00000018349) #26	NUBP2 (ENSPANG00000017597) #27	IGFALS (ENSPANG00000005022) #28	HAGH (ENSPANG00000000459) #29	FAHD1 (ENSPANG00000015411) #30	ENSPANG00000034551 #31	HS3ST6 (ENSPANG00000007025) #32	ENSPANG00000029688 #33	RPL3L (ENSPANG00000011106) #34	NDUFB10 (ENSPANG00000008274) #35	RPS2 (ENSPANG00000021004)	RNF151 (ENSPANG00000019234)
Cercopithecinae_d	ANCESTRAL SPECIES	65	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.b.a	ENSGT00530000063647.A.a
Sooty mangabey	MODERN SPECIES	104	UBE2I (ENSCATG00000038133) #8	BAIAP3 (ENSCATG00000044317)	TSR3 (ENSCATG00000002510) #9	GNPTG (ENSCATG00000040204) #10	UNKL (ENSCATG00000033183) #11	UQCC4 (ENSCATG00000017665) #12	PERCC1 (ENSCATG00000014112) #13	CCDC154 (ENSCATG00000039677) #14	CLCN7 (ENSCATG00000013101) #15	PTX4 (ENSCATG00000041551) #16	TELO2 (ENSCATG00000031718) #17	TMEM204 (ENSCATG00000041448) #19	IFT140 (ENSCATG00000035856) #18	CRAMP1 (ENSCATG00000039680) #20	JPT2 (ENSCATG00000039325) #21	MAPK8IP3 (ENSCATG00000037988) #22	NME3 (ENSCATG00000031446) #23	MRPS34 (ENSCATG00000017392) #24	EME2 (ENSCATG00000034726) #25	SPSB3 (ENSCATG00000014492) #26	NUBP2 (ENSCATG00000032660) #27	IGFALS (ENSCATG00000038603) #28	HAGH (ENSCATG00000031808) #29	FAHD1 (ENSCATG00000024626) #30	ENSCATG00000013960 #31	HS3ST6 (ENSCATG00000044878) #32	ENSCATG00000045189 #33	RPL3L (ENSCATG00000043808) #34	NDUFB10 (ENSCATG00000020227) #35	ENSCATG00000040770	RNF151 (ENSCATG00000029626)
Drill	MODERN SPECIES	1516	TPSD1 (ENSMLEG00000040956) #7	UBE2I (ENSMLEG00000037403) #8	BAIAP3 (ENSMLEG00000043092)	TSR3 (ENSMLEG00000030991) #9	GNPTG (ENSMLEG00000035838) #10	UNKL (ENSMLEG00000037946) #11	UQCC4 (ENSMLEG00000035865) #12	CCDC154 (ENSMLEG00000005828) #14	CLCN7 (ENSMLEG00000027830) #15	PTX4 (ENSMLEG00000042635) #16	TELO2 (ENSMLEG00000035497) #17	IFT140 (ENSMLEG00000035964) #18	TMEM204 (ENSMLEG00000040932) #19	CRAMP1 (ENSMLEG00000040080) #20	JPT2 (ENSMLEG00000030463) #21	MAPK8IP3 (ENSMLEG00000034940) #22	ENSMLEG00000038547 #23	MRPS34 (ENSMLEG00000028354) #24	EME2 (ENSMLEG00000044276) #25	SPSB3 (ENSMLEG00000032836) #26	NUBP2 (ENSMLEG00000028983) #27	IGFALS (ENSMLEG00000040910) #28	HAGH (ENSMLEG00000042252) #29	FAHD1 (ENSMLEG00000026819) #30	ENSMLEG00000035652 #31	HS3ST6 (ENSMLEG00000026210) #32	ENSMLEG00000043698 #33	RPL3L (ENSMLEG00000032414) #34	NDUFB10 (ENSMLEG00000021536) #35	ENSMLEG00000038670	ENSMLEG00000030812
Macaca	ANCESTRAL SPECIES	8	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Pig-tailed macaque	MODERN SPECIES	124	UBE2I (ENSMNEG00000041643) #8	BAIAP3 (ENSMNEG00000028463)	TSR3 (ENSMNEG00000038392) #9	GNPTG (ENSMNEG00000038413) #10	UNKL (ENSMNEG00000036131) #11	UQCC4 (ENSMNEG00000032053) #12	PERCC1 (ENSMNEG00000002629) #13	CCDC154 (ENSMNEG00000041464) #14	CLCN7 (ENSMNEG00000032889) #15	PTX4 (ENSMNEG00000003932) #16	TELO2 (ENSMNEG00000030153) #17	TMEM204 (ENSMNEG00000029407) #19	IFT140 (ENSMNEG00000001208) #18	CRAMP1 (ENSMNEG00000032283) #20	JPT2 (ENSMNEG00000034006) #21	MAPK8IP3 (ENSMNEG00000034470) #22	NME3 (ENSMNEG00000016858) #23	MRPS34 (ENSMNEG00000040928) #24	EME2 (ENSMNEG00000028998) #25	SPSB3 (ENSMNEG00000043847) #26	NUBP2 (ENSMNEG00000042575) #27	IGFALS (ENSMNEG00000032413) #28	HAGH (ENSMNEG00000044613) #29	FAHD1 (ENSMNEG00000042967) #30	ENSMNEG00000004327 #31	HS3ST6 (ENSMNEG00000040903) #32	ENSMNEG00000041015 #33	RPL3L (ENSMNEG00000029185) #34	NDUFB10 (ENSMNEG00000004959) #35	ENSMNEG00000031742	RNF151 (ENSMNEG00000029972)
Macaca_a	ANCESTRAL SPECIES	25	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.b.a.a.a.a.b.b.b.a	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Crab-eating macaque	MODERN SPECIES	12	BAIAP3 (ENSMFAG00000001912)	TSR3 (ENSMFAG00000031171) #9	GNPTG (ENSMFAG00000031980) #10	ENSMFAG00000064676 #11	ENSMFAG00000059912 #12	CLCN7 (ENSMFAG00000031886) #15	CCDC154 (ENSMFAG00000000761) #14	PTX4 (ENSMFAG00000031460) #16	ENSMFAG00000058884	TELO2 (ENSMFAG00000037116) #17	IFT140 (ENSMFAG00000038575) #18	TMEM204 (ENSMFAG00000032333) #19	CRAMP1 (ENSMFAG00000002985) #20	JPT2 (ENSMFAG00000033861) #21	ENSMFAG00000060156	MAPK8IP3 (ENSMFAG00000037276) #22	MRPS34 (ENSMFAG00000046146) #24	EME2 (ENSMFAG00000026250) #25	NUBP2 (ENSMFAG00000037059) #27	SPSB3 (ENSMFAG00000031888) #26	IGFALS (ENSMFAG00000042039) #28	HAGH (ENSMFAG00000004030) #29	FAHD1 (ENSMFAG00000037024) #30	ENSMFAG00000000726 #31	ENSMFAG00000054955	HS3ST6 (ENSMFAG00000054823) #32	RPL3L (ENSMFAG00000039775) #34	NDUFB10 (ENSMFAG00000000484) #35	ENSMFAG00000002939	RNF151 (ENSMFAG00000035160)	TBL3 (ENSMFAG00000030302) #37
Rhesus	MODERN SPECIES	12	UBE2I (ENSMMUG00000044277) #8	TSR3 (ENSMMUG00000006428) #9	GNPTG (ENSMMUG00000012439) #10	UNKL (ENSMMUG00000012440) #11	ENSMMUG00000061546	CLCN7 (ENSMMUG00000021518) #15	CCDC154 (ENSMMUG00000021102) #14	PTX4 (ENSMMUG00000062229) #16	ENSMMUG00000050070	TELO2 (ENSMMUG00000008119) #17	IFT140 (ENSMMUG00000000044) #18	TMEM204 (ENSMMUG00000062198) #19	CRAMP1 (ENSMMUG00000000978) #20	ENSMMUG00000059063	JPT2 (ENSMMUG00000000979) #21	MAPK8IP3 (ENSMMUG00000017496) #22	NME3 (ENSMMUG00000003857) #23	MRPS34 (ENSMMUG00000018594) #24	EME2 (ENSMMUG00000060835) #25	SPSB3 (ENSMMUG00000060350) #26	NUBP2 (ENSMMUG00000018597) #27	IGFALS (ENSMMUG00000018598) #28	HAGH (ENSMMUG00000000737) #29	FAHD1 (ENSMMUG00000000738) #30	MEIOB (ENSMMUG00000000739) #31	ENSMMUG00000055452	HS3ST6 (ENSMMUG00000063633) #32	MSRB1 (ENSMMUG00000007936) #33	RPL3L (ENSMMUG00000007937) #34	NDUFB10 (ENSMMUG00000057370) #35	RPS2 (ENSMMUG00000029267)
Vervet Monkey	MODERN SPECIES	24	ENSCSAG00000011780	UBE2I (ENSCSAG00000011775) #8	BAIAP3 (ENSCSAG00000011761)	TSR3 (ENSCSAG00000011742) #9	GNPTG (ENSCSAG00000011737) #10	UNKL (ENSCSAG00000011709) #11	UQCC4 (ENSCSAG00000011651) #12	CCDC154 (ENSCSAG00000011633) #14	CLCN7 (ENSCSAG00000011607) #15	PTX4 (ENSCSAG00000011586) #16	TELO2 (ENSCSAG00000011579) #17	IFT140 (ENSCSAG00000011558) #18	TMEM204 (ENSCSAG00000011531) #19	CRAMP1 (ENSCSAG00000011519) #20	JPT2 (ENSCSAG00000011502) #21	MAPK8IP3 (ENSCSAG00000011484) #22	NME3 (ENSCSAG00000011458) #23	MRPS34 (ENSCSAG00000011443) #24	EME2 (ENSCSAG00000011426) #25	SPSB3 (ENSCSAG00000011396) #26	NUBP2 (ENSCSAG00000011369) #27	IGFALS (ENSCSAG00000011362) #28	HAGH (ENSCSAG00000011337) #29	FAHD1 (ENSCSAG00000018842) #30	ENSCSAG00000011268 #31	HS3ST6 (ENSCSAG00000011240) #32	RPL3L (ENSCSAG00000011232) #34	NDUFB10 (ENSCSAG00000011226) #35	RPS2 (ENSCSAG00000011216)	RNF151 (ENSCSAG00000011197)	TBL3 (ENSCSAG00000011191) #37
Rhinopithecus	ANCESTRAL SPECIES	14	ENSGT00940000165532 #7	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00530000063647.A.a
Black snub-nosed monkey	MODERN SPECIES	1929	ENSRBIG00000044236	UBE2I (ENSRBIG00000013186) #8	BAIAP3 (ENSRBIG00000031600)	TSR3 (ENSRBIG00000043958) #9	GNPTG (ENSRBIG00000034109) #10	UNKL (ENSRBIG00000040235) #11	UQCC4 (ENSRBIG00000038097) #12	CCDC154 (ENSRBIG00000040319) #14	CLCN7 (ENSRBIG00000039539) #15	PTX4 (ENSRBIG00000027792) #16	TELO2 (ENSRBIG00000038822) #17	IFT140 (ENSRBIG00000040322) #18	TMEM204 (ENSRBIG00000033674) #19	CRAMP1 (ENSRBIG00000031863) #20	JPT2 (ENSRBIG00000041459) #21	MAPK8IP3 (ENSRBIG00000044410) #22	NME3 (ENSRBIG00000031631) #23	MRPS34 (ENSRBIG00000030707) #24	EME2 (ENSRBIG00000032429) #25	SPSB3 (ENSRBIG00000039428) #26	NUBP2 (ENSRBIG00000031416) #27	IGFALS (ENSRBIG00000037270) #28	HAGH (ENSRBIG00000034228) #29	ENSRBIG00000030178 #31	HS3ST6 (ENSRBIG00000044265) #32	ENSRBIG00000044576 #33	RPL3L (ENSRBIG00000028920) #34	NDUFB10 (ENSRBIG00000044605) #35	RPS2 (ENSRBIG00000036242)	RNF151 (ENSRBIG00000030571)	TBL3 (ENSRBIG00000032982) #37
Golden snub-nosed monkey	MODERN SPECIES	2643	TPSD1 (ENSRROG00000043542) #7	UBE2I (ENSRROG00000044039) #8	BAIAP3 (ENSRROG00000031004)	TSR3 (ENSRROG00000042532) #9	GNPTG (ENSRROG00000035086) #10	UNKL (ENSRROG00000029341) #11	UQCC4 (ENSRROG00000041801) #12	CCDC154 (ENSRROG00000044225) #14	CLCN7 (ENSRROG00000041929) #15	PTX4 (ENSRROG00000043040) #16	TELO2 (ENSRROG00000028637) #17	IFT140 (ENSRROG00000015287) #18	TMEM204 (ENSRROG00000043665) #19	CRAMP1 (ENSRROG00000043453) #20	JPT2 (ENSRROG00000025417) #21	MAPK8IP3 (ENSRROG00000045499) #22	ENSRROG00000035949 #23	MRPS34 (ENSRROG00000028689) #24	EME2 (ENSRROG00000043980) #25	SPSB3 (ENSRROG00000044609) #26	NUBP2 (ENSRROG00000045209) #27	IGFALS (ENSRROG00000042451) #28	HAGH (ENSRROG00000032851) #29	FAHD1 (ENSRROG00000033003) #30	ENSRROG00000023184 #31	HS3ST6 (ENSRROG00000045261) #32	MSRB1 (ENSRROG00000017890) #33	RPL3L (ENSRROG00000033620) #34	NDUFB10 (ENSRROG00000005315) #35	RPS2 (ENSRROG00000035267)	RNF151 (ENSRROG00000035586)
Platyrrhini	ANCESTRAL SPECIES	32	ENSGT00550000075088.a.a.j.b.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000162015	ENSGT00940000160374	ENSGT00940000155267.c	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a
Cebidae	ANCESTRAL SPECIES	16	ENSGT00550000075088.a.a.j.b.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000162015	ENSGT00940000160374	ENSGT00940000155267.c	ENSGT00390000012605	ENSGT00550000074873.d	ENSGT00410000025739.c.a
Cebidae_a	ANCESTRAL SPECIES	15	ENSGT00940000158868	ENSGT00550000075088.a.a.j.b.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000162015	ENSGT00940000160374	ENSGT00940000155267.c	ENSGT00390000012605	ENSGT00550000074873.d	ENSGT00410000025739.c.a
Bolivian squirrel monkey	MODERN SPECIES	71	ENSSBOG00000009155	ENSSBOG00000028070 #8	BAIAP3 (ENSSBOG00000018805)	TSR3 (ENSSBOG00000020595) #9	GNPTG (ENSSBOG00000023025) #10	UNKL (ENSSBOG00000031173) #11	UQCC4 (ENSSBOG00000018977) #12	CCDC154 (ENSSBOG00000033270) #14	CLCN7 (ENSSBOG00000021371) #15	PTX4 (ENSSBOG00000024401) #16	TELO2 (ENSSBOG00000031314) #17	IFT140 (ENSSBOG00000021449) #18	TMEM204 (ENSSBOG00000023717) #19	CRAMP1 (ENSSBOG00000032950) #20	JPT2 (ENSSBOG00000021481) #21	MAPK8IP3 (ENSSBOG00000032195) #22	NME3 (ENSSBOG00000035930) #23	MRPS34 (ENSSBOG00000022248) #24	EME2 (ENSSBOG00000031994) #25	SPSB3 (ENSSBOG00000031939) #26	NUBP2 (ENSSBOG00000000048) #27	IGFALS (ENSSBOG00000033879) #28	HAGH (ENSSBOG00000027026) #29	FAHD1 (ENSSBOG00000033711) #30	ENSSBOG00000012975 #31	PRSS27 (ENSSBOG00000026534)	KCTD5 (ENSSBOG00000032146)	PDPK1 (ENSSBOG00000024665)	AMDHD2 (ENSSBOG00000022867)	ENSSBOG00000035802	TBC1D24 (ENSSBOG00000029183)
Capuchin	MODERN SPECIES	444	ENSCCAG00000036726	ENSCCAG00000009138 #8	BAIAP3 (ENSCCAG00000014999)	TSR3 (ENSCCAG00000034922) #9	GNPTG (ENSCCAG00000033363) #10	UNKL (ENSCCAG00000022808) #11	C16orf91 (ENSCCAG00000036104) #12	CCDC154 (ENSCCAG00000036580) #14	CLCN7 (ENSCCAG00000020383) #15	PTX4 (ENSCCAG00000014809) #16	TELO2 (ENSCCAG00000023349) #17	IFT140 (ENSCCAG00000019829) #18	TMEM204 (ENSCCAG00000022468) #19	CRAMP1 (ENSCCAG00000022072) #20	JPT2 (ENSCCAG00000025880) #21	MAPK8IP3 (ENSCCAG00000026687) #22	NME3 (ENSCCAG00000035080) #23	MRPS34 (ENSCCAG00000021752) #24	EME2 (ENSCCAG00000027956) #25	SPSB3 (ENSCCAG00000028227) #26	NUBP2 (ENSCCAG00000024752) #27	IGFALS (ENSCCAG00000024463) #28	HAGH (ENSCCAG00000024223) #29	FAHD1 (ENSCCAG00000027433) #30	MEIOB (ENSCCAG00000025134) #31	PRSS27 (ENSCCAG00000033088)	KCTD5 (ENSCCAG00000029747)	PDPK1 (ENSCCAG00000037062)	ENSCCAG00000025791	AMDHD2 (ENSCCAG00000025467)	ATP6V0C (ENSCCAG00000035848)
Marmoset	MODERN SPECIES	3	UBE2I (ENSCJAG00000043035) #8	BAIAP3 (ENSCJAG00000013194)	TSR3 (ENSCJAG00000013185) #9	GNPTG (ENSCJAG00000013166) #10	UNKL (ENSCJAG00000013151) #11	UQCC4 (ENSCJAG00000014406) #12	PERCC1 (ENSCJAG00000038190) #13	CCDC154 (ENSCJAG00000014379) #14	CLCN7 (ENSCJAG00000014423) #15	PTX4 (ENSCJAG00000014497) #16	TELO2 (ENSCJAG00000014499) #17	IFT140 (ENSCJAG00000014532) #18	TMEM204 (ENSCJAG00000014588) #19	CRAMP1 (ENSCJAG00000014596) #20	ENSCJAG00000014626 #21	MAPK8IP3 (ENSCJAG00000053951) #22	NME3 (ENSCJAG00000014687) #23	MRPS34 (ENSCJAG00000014694) #24	HAGH (ENSCJAG00000014745) #29	FAHD1 (ENSCJAG00000014764) #30	ENSCJAG00000014767 #31	PRSS27 (ENSCJAG00000074570)	KCTD5 (ENSCJAG00000042757)	PDPK1 (ENSCJAG00000014801)	AMDHD2 (ENSCJAG00000014876)	ATP6V0C (ENSCJAG00000045810)	TBC1D24 (ENSCJAG00000014910)	NTN3 (ENSCJAG00000014914)	TEDC2 (ENSCJAG00000084462)	CCNF (ENSCJAG00000014784)	ABCA3 (ENSCJAG00000014934)
Mas night monkey	MODERN SPECIES	1162	BAIAP3 (ENSANAG00000026454)	TSR3 (ENSANAG00000023143) #9	GNPTG (ENSANAG00000021857) #10	UNKL (ENSANAG00000021942) #11	UQCC4 (ENSANAG00000021620) #12	CCDC154 (ENSANAG00000020546) #14	CLCN7 (ENSANAG00000037591) #15	PTX4 (ENSANAG00000035628) #16	TELO2 (ENSANAG00000035480) #17	TMEM204 (ENSANAG00000034748) #19	IFT140 (ENSANAG00000033226) #18	CRAMP1 (ENSANAG00000027271) #20	JPT2 (ENSANAG00000026079) #21	NME3 (ENSANAG00000023706) #23	MRPS34 (ENSANAG00000021904) #24	MAPK8IP3 (ENSANAG00000035325) #22	SPSB3 (ENSANAG00000028700) #26	NUBP2 (ENSANAG00000026789) #27	IGFALS (ENSANAG00000026151) #28	ENSANAG00000019351 #30	HAGH (ENSANAG00000020735) #29	ENSANAG00000034768 #30	ENSANAG00000033819 #31	PRSS27 (ENSANAG00000032865)	KCTD5 (ENSANAG00000031560)	ENSANAG00000020510	AMDHD2 (ENSANAG00000031967)	ENSANAG00000030338	TBC1D24 (ENSANAG00000028671)	NTN3 (ENSANAG00000028509)	TEDC2 (ENSANAG00000027439)
Tarsier	MODERN SPECIES	6596	ENSTSYG00000034985	UBE2I (ENSTSYG00000028221) #8	BAIAP3 (ENSTSYG00000029544)	TSR3 (ENSTSYG00000026081) #9	ENSTSYG00000026873	UNKL (ENSTSYG00000033619) #11	CUNH16orf91 (ENSTSYG00000030140) #12	CCDC154 (ENSTSYG00000036155) #14	CLCN7 (ENSTSYG00000033315) #15	PTX4 (ENSTSYG00000033919) #16	TELO2 (ENSTSYG00000014612) #17	IFT140 (ENSTSYG00000006588) #18	TMEM204 (ENSTSYG00000006646) #19	CRAMP1 (ENSTSYG00000002901) #20	JPT2 (ENSTSYG00000002923) #21	MAPK8IP3 (ENSTSYG00000025647) #22	MRPS34 (ENSTSYG00000031660) #24	EME2 (ENSTSYG00000030413) #25	SPSB3 (ENSTSYG00000033584) #26	NUBP2 (ENSTSYG00000033549) #27	IGFALS (ENSTSYG00000034727) #28	HAGH (ENSTSYG00000006985) #29	FAHD1 (ENSTSYG00000007002) #30	ENSTSYG00000007030 #31	HS3ST6 (ENSTSYG00000026580) #32	MSRB1 (ENSTSYG00000031778) #33
Strepsirrhini	ANCESTRAL SPECIES	24	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Lemuriformes	ANCESTRAL SPECIES	27	ENSGT00550000075088.a.a.k.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Lemuriformes_a	ANCESTRAL SPECIES	23	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000169717	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652.i #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00530000063647.A.a
Coquerels sifaka	MODERN SPECIES	384	BAIAP3 (ENSPCOG00000021367)	TSR3 (ENSPCOG00000027967) #9	GNPTG (ENSPCOG00000015436) #10	ENSPCOG00000005384	UNKL (ENSPCOG00000017889) #11	UQCC4 (ENSPCOG00000017870) #12	PERCC1 (ENSPCOG00000019562) #13	CCDC154 (ENSPCOG00000027402) #14	CLCN7 (ENSPCOG00000023505) #15	PTX4 (ENSPCOG00000025173) #16	TELO2 (ENSPCOG00000022795) #17	IFT140 (ENSPCOG00000023133) #18	TMEM204 (ENSPCOG00000027514) #19	CRAMP1 (ENSPCOG00000004847) #20	ENSPCOG00000028105 #21	MAPK8IP3 (ENSPCOG00000021523) #22	NME3 (ENSPCOG00000019193) #23	MRPS34 (ENSPCOG00000026798) #24	EME2 (ENSPCOG00000021099) #25	SPSB3 (ENSPCOG00000015385) #26	NUBP2 (ENSPCOG00000018600) #27	IGFALS (ENSPCOG00000012687) #28	HAGH (ENSPCOG00000026794) #29	FAHD1 (ENSPCOG00000007621) #30	ENSPCOG00000002540 #31	HS3ST6 (ENSPCOG00000027953) #32	MSRB1 (ENSPCOG00000027095) #33	RPL3L (ENSPCOG00000014695) #34	NDUFB10 (ENSPCOG00000022126) #35	ENSPCOG00000028664	RNF151 (ENSPCOG00000015191)
Greater bamboo lemur	MODERN SPECIES	390	ENSPSMG00000024893	UBE2I (ENSPSMG00000024884) #8	ENSPSMG00000024876	TSR3 (ENSPSMG00000024865) #9	ENSPSMG00000024860	UNKL (ENSPSMG00000024857) #11	UQCC4 (ENSPSMG00000024850) #12	CCDC154 (ENSPSMG00000024847) #14	CLCN7 (ENSPSMG00000024837) #15	PTX4 (ENSPSMG00000024796) #16	TELO2 (ENSPSMG00000024784) #17	TMEM204 (ENSPSMG00000024736) #19	IFT140 (ENSPSMG00000024730) #18	CRAMP1 (ENSPSMG00000024711) #20	JPT2 (ENSPSMG00000024685) #21	MAPK8IP3 (ENSPSMG00000024595) #22	NME3 (ENSPSMG00000024387) #23	MRPS34 (ENSPSMG00000024379) #24	EME2 (ENSPSMG00000024369) #25	SPSB3 (ENSPSMG00000024361) #26	NUBP2 (ENSPSMG00000024328) #27	IGFALS (ENSPSMG00000024321) #28	ENSPSMG00000024318	HAGH (ENSPSMG00000024311) #29	FAHD1 (ENSPSMG00000024285) #30	ENSPSMG00000024276 #31	ENSPSMG00000024257	HS3ST6 (ENSPSMG00000024249) #32	MSRB1 (ENSPSMG00000024244) #33	RPL3L (ENSPSMG00000024237) #34	NDUFB10 (ENSPSMG00000024222) #35
Mouse lemur	MODERN SPECIES	8	ENSMICG00000004987	UBE2I (ENSMICG00000030413) #8	BAIAP3 (ENSMICG00000031314)	TSR3 (ENSMICG00000045072) #9	GNPTG (ENSMICG00000047931) #10	UNKL (ENSMICG00000007141) #11	UQCC4 (ENSMICG00000047600) #12	CCDC154 (ENSMICG00000013192) #14	CLCN7 (ENSMICG00000013205) #15	PTX4 (ENSMICG00000000217) #16	TELO2 (ENSMICG00000000220) #17	IFT140 (ENSMICG00000014051) #18	TMEM204 (ENSMICG00000042845) #19	CRAMP1 (ENSMICG00000014094) #20	JPT2 (ENSMICG00000026714) #21	MAPK8IP3 (ENSMICG00000002091) #22	NME3 (ENSMICG00000030545) #23	MRPS34 (ENSMICG00000031095) #24	SPSB3 (ENSMICG00000002122) #26	NUBP2 (ENSMICG00000002126) #27	IGFALS (ENSMICG00000002129) #28	HAGH (ENSMICG00000002132) #29	FAHD1 (ENSMICG00000002137) #30	ENSMICG00000011322 #31	ENSMICG00000037918	HS3ST6 (ENSMICG00000011342) #32	MSRB1 (ENSMICG00000011349) #33	RPL3L (ENSMICG00000012746) #34	NDUFB10 (ENSMICG00000027466) #35	ENSMICG00000012765	RNF151 (ENSMICG00000012775)
Bushbaby	MODERN SPECIES	159	ENSOGAG00000012923	ENSOGAG00000032629	UBE2I (ENSOGAG00000001428) #8	TSR3 (ENSOGAG00000001433) #9	GNPTG (ENSOGAG00000001435) #10	UNKL (ENSOGAG00000027777) #11	UQCC4 (ENSOGAG00000029437) #12	CCDC154 (ENSOGAG00000001438) #14	CLCN7 (ENSOGAG00000004362) #15	PTX4 (ENSOGAG00000032762) #16	TELO2 (ENSOGAG00000004371) #17	IFT140 (ENSOGAG00000001245) #18	JPT2 (ENSOGAG00000012638) #21	TMEM204 (ENSOGAG00000001249) #19	CRAMP1 (ENSOGAG00000001253) #20	MAPK8IP3 (ENSOGAG00000012639) #22	NME3 (ENSOGAG00000026071) #23	MRPS34 (ENSOGAG00000012647) #24	EME2 (ENSOGAG00000012649) #25	SPSB3 (ENSOGAG00000027372) #26	NUBP2 (ENSOGAG00000012655) #27	IGFALS (ENSOGAG00000012659) #28	HAGH (ENSOGAG00000012660) #29	FAHD1 (ENSOGAG00000012662) #30	HS3ST6 (ENSOGAG00000010083) #32	RPL3L (ENSOGAG00000010087) #34	NDUFB10 (ENSOGAG00000010094) #35	RPS2 (ENSOGAG00000010098)	TBL3 (ENSOGAG00000010104) #37	NOXO1 (ENSOGAG00000010110)	GFER (ENSOGAG00000016907)
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Tree shrew	MODERN SPECIES	5307																ENSTBEG00000002064 #22	JPT2 (ENSTBEG00000004148) #21
Glires	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Rodentia	ANCESTRAL SPECIES	11	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Rodentia_B	ANCESTRAL SPECIES	15	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	333	ENSDORG00000014822	Prss29 (ENSDORG00000029349)	Ube2i (ENSDORG00000023979) #8	Baiap3 (ENSDORG00000008452)	ENSDORG00000008458 #9	Gnptg (ENSDORG00000015662) #10	Unkl (ENSDORG00000015663) #11	Ccdc154 (ENSDORG00000009310) #14	Clcn7 (ENSDORG00000009312) #15	Ptx4 (ENSDORG00000000363) #16	Telo2 (ENSDORG00000004164) #17	Tmem204 (ENSDORG00000028876) #19	Ift140 (ENSDORG00000004166) #18	Cramp1 (ENSDORG00000013715) #20	Jpt2 (ENSDORG00000025742) #21	ENSDORG00000026402 #22	ENSDORG00000009659 #22	ENSDORG00000027160 #25	Spsb3 (ENSDORG00000009668) #26	Nubp2 (ENSDORG00000009670) #27	Igfals (ENSDORG00000009672) #28	Hagh (ENSDORG00000009673) #29	Meiob (ENSDORG00000012742) #31	Hs3st6 (ENSDORG00000023206) #32	Msrb1 (ENSDORG00000025189) #33	Rpl3l (ENSDORG00000007373) #34	Ndufb10 (ENSDORG00000007374) #35	ENSDORG00000007375	ENSDORG00000007376	Tbl3 (ENSDORG00000007377) #37	Noxo1 (ENSDORG00000007379)
Kangaroo rat	MODERN SPECIES	333	Prss29 (ENSDORG00000029349)	Ube2i (ENSDORG00000023979) #8	Baiap3 (ENSDORG00000008452)	ENSDORG00000008458 #9	Gnptg (ENSDORG00000015662) #10	Unkl (ENSDORG00000015663) #11	Ccdc154 (ENSDORG00000009310) #14	Clcn7 (ENSDORG00000009312) #15	Ptx4 (ENSDORG00000000363) #16	Telo2 (ENSDORG00000004164) #17	Tmem204 (ENSDORG00000028876) #19	Ift140 (ENSDORG00000004166) #18	Cramp1 (ENSDORG00000013715) #20	Jpt2 (ENSDORG00000025742) #21	ENSDORG00000026402 #22	ENSDORG00000009659 #22	ENSDORG00000027160 #25	Spsb3 (ENSDORG00000009668) #26	Nubp2 (ENSDORG00000009670) #27	Igfals (ENSDORG00000009672) #28	Hagh (ENSDORG00000009673) #29	Meiob (ENSDORG00000012742) #31	Hs3st6 (ENSDORG00000023206) #32	Msrb1 (ENSDORG00000025189) #33	Rpl3l (ENSDORG00000007373) #34	Ndufb10 (ENSDORG00000007374) #35	ENSDORG00000007375	ENSDORG00000007376	Tbl3 (ENSDORG00000007377) #37	Noxo1 (ENSDORG00000007379)	Gfer (ENSDORG00000025553)
Myomorpha	ANCESTRAL SPECIES	17	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Muroidea	ANCESTRAL SPECIES	10	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b.b	ENSGT00530000063647.A.a
Cricetidae	ANCESTRAL SPECIES		ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b.b	ENSGT00530000063647.A.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.b	ENSGT00530000063647.A.a
Chinese hamster chok1gshd	MODERN SPECIES	229	ENSCGRG00001021777 #8	Baiap3 (ENSCGRG00001011930)	Tsr3 (ENSCGRG00001021799) #9	Gnptg (ENSCGRG00001018591) #10	Unkl (ENSCGRG00001014153) #11	Uqcc4 (ENSCGRG00001011218) #12	ENSCGRG00001008639	Ccdc154 (ENSCGRG00001021301) #14	Clcn7 (ENSCGRG00001022791) #15	Ptx4 (ENSCGRG00001018707) #16	Telo2 (ENSCGRG00001024725) #17	Tmem204 (ENSCGRG00001023413) #19	Ift140 (ENSCGRG00001020155) #18	Cramp1 (ENSCGRG00001024738) #20	Jpt2 (ENSCGRG00001023398) #21	Mapk8ip3 (ENSCGRG00001009625) #22	Nme3 (ENSCGRG00001024438) #23	Mrps34 (ENSCGRG00001023318) #24	Eme2 (ENSCGRG00001014405) #25	Spsb3 (ENSCGRG00001017880) #26	Nubp2 (ENSCGRG00001024233) #27	Igfals (ENSCGRG00001023230) #28	Hagh (ENSCGRG00001014522) #29	Fahd1 (ENSCGRG00001013933) #30	Meiob (ENSCGRG00001024640) #31	Hs3st6 (ENSCGRG00001024254) #32	Msrb1 (ENSCGRG00001023043) #33	Rpl3l (ENSCGRG00001016900) #34	Ndufb10 (ENSCGRG00001013121) #35	Rps2 (ENSCGRG00001023670)	Rnf151 (ENSCGRG00001023396)
Golden Hamster	MODERN SPECIES	733	Ube2i (ENSMAUG00000019217) #8	Baiap3 (ENSMAUG00000009623)	Tsr3 (ENSMAUG00000019859) #9	Gnptg (ENSMAUG00000011816) #10	Unkl (ENSMAUG00000016281) #11	Uqcc4 (ENSMAUG00000002041) #12	Ccdc154 (ENSMAUG00000021304) #14	Clcn7 (ENSMAUG00000021954) #15	Ptx4 (ENSMAUG00000017221) #16	ENSMAUG00000022008 #18	Tmem204 (ENSMAUG00000008010) #19	ENSMAUG00000022190 #18	Cramp1 (ENSMAUG00000019364) #20	Jpt2 (ENSMAUG00000005592) #21	ENSMAUG00000007417	Mapk8ip3 (ENSMAUG00000010859) #22	Nme3 (ENSMAUG00000008485) #23	Mrps34 (ENSMAUG00000015906) #24	Eme2 (ENSMAUG00000008967) #25	Spsb3 (ENSMAUG00000011949) #26	Nubp2 (ENSMAUG00000006099) #27	Igfals (ENSMAUG00000021813) #28	Hagh (ENSMAUG00000012144) #29	Fahd1 (ENSMAUG00000008227) #30	Meiob (ENSMAUG00000021803) #31	Hs3st6 (ENSMAUG00000018680) #32	Msrb1 (ENSMAUG00000019299) #33	Rpl3l (ENSMAUG00000008094) #34	Ndufb10 (ENSMAUG00000007967) #35	Rnf151 (ENSMAUG00000004941)	Tbl3 (ENSMAUG00000008718) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b.b	ENSGT00530000063647.A.a
Northern American deer mouse	MODERN SPECIES	21	Baiap3 (ENSPEMG00000017470)	Tsr3 (ENSPEMG00000005763) #9	ENSPEMG00000031212	ENSPEMG00000028821	Unkl (ENSPEMG00000008937) #11	Uqcc4 (ENSPEMG00000025335) #12	Percc1 (ENSPEMG00000028044) #13	Ccdc154 (ENSPEMG00000006684) #14	Clcn7 (ENSPEMG00000016398) #15	Ptx4 (ENSPEMG00000012407) #16	Telo2 (ENSPEMG00000017007) #17	Ift140 (ENSPEMG00000014706) #18	Tmem204 (ENSPEMG00000027984) #19	Cramp1 (ENSPEMG00000007023) #20	Jpt2 (ENSPEMG00000017546) #21	Mapk8ip3 (ENSPEMG00000011936) #22	Nme3 (ENSPEMG00000018639) #23	Mrps34 (ENSPEMG00000005957) #24	Eme2 (ENSPEMG00000001093) #25	Spsb3 (ENSPEMG00000016895) #26	Nubp2 (ENSPEMG00000010441) #27	Igfals (ENSPEMG00000008578) #28	Hagh (ENSPEMG00000010566) #29	ENSPEMG00000013732 #30	ENSPEMG00000025128 #31	Slit3 (ENSPEMG00000018195)	Pank3 (ENSPEMG00000024678)	Fbll1 (ENSPEMG00000020325)	Rars (ENSPEMG00000020288)	Wwc1 (ENSPEMG00000011501)	Tenm2 (ENSPEMG00000018309)
Prairie vole	MODERN SPECIES	15	ENSMOCG00000003971 #8	Baiap3 (ENSMOCG00000013309)	Tsr3 (ENSMOCG00000020216) #9	Gnptg (ENSMOCG00000003323) #10	Unkl (ENSMOCG00000011424) #11	Uqcc4 (ENSMOCG00000014311) #12	Ccdc154 (ENSMOCG00000008134) #14	Clcn7 (ENSMOCG00000012551) #15	Ptx4 (ENSMOCG00000016016) #16	Telo2 (ENSMOCG00000022271) #17	ENSMOCG00000014894 #18	Tmem204 (ENSMOCG00000010004) #19	ENSMOCG00000011625 #18	Cramp1 (ENSMOCG00000015569) #20	Jpt2 (ENSMOCG00000022903) #21	Mapk8ip3 (ENSMOCG00000018334) #22	ENSMOCG00000003271 #23	Mrps34 (ENSMOCG00000004274) #24	Eme2 (ENSMOCG00000019621) #25	Spsb3 (ENSMOCG00000000734) #26	Nubp2 (ENSMOCG00000003091) #27	Igfals (ENSMOCG00000013702) #28	Hagh (ENSMOCG00000020674) #29	Fahd1 (ENSMOCG00000001032) #30	Meiob (ENSMOCG00000020796) #31	Hs3st6 (ENSMOCG00000022877) #32	Msrb1 (ENSMOCG00000013864) #33	Rpl3l (ENSMOCG00000020012) #34	Ndufb10 (ENSMOCG00000011750) #35	ENSMOCG00000014200	Rnf151 (ENSMOCG00000021816)
Murinae	ANCESTRAL SPECIES	7	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00940000153095.g.b.a.a.b.a.b.b
Mus	ANCESTRAL SPECIES	21	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652.r #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00390000014665.b #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652.r #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
Mus_C	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665.b #9	ENSGT00510000048359 #10	ENSGT00940000158822.l #11	ENSGT00910000147428	ENSGT00940000158822.k #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652.q.b #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a
spretus	MODERN SPECIES	8	Tsr3 (MGP_SPRETEiJ_G0022139) #9	Gnptg (MGP_SPRETEiJ_G0022138) #10	MGP_SPRETEiJ_G0022137 #11	Unkl (MGP_SPRETEiJ_G0022136) #11	Uqcc4 (MGP_SPRETEiJ_G0022135) #12	Ccdc154 (MGP_SPRETEiJ_G0022134) #14	Clcn7 (MGP_SPRETEiJ_G0022133) #15	Ptx4 (MGP_SPRETEiJ_G0022132) #16	Telo2 (MGP_SPRETEiJ_G0022131) #17	Tmem204 (MGP_SPRETEiJ_G0022130) #19	Ift140 (MGP_SPRETEiJ_G0022129) #18	Cramp1 (MGP_SPRETEiJ_G0022128) #20	Jpt2 (MGP_SPRETEiJ_G0022127) #21	Nme3 (MGP_SPRETEiJ_G0022126) #23	Mrps34 (MGP_SPRETEiJ_G0022125) #24	Mapk8ip3 (MGP_SPRETEiJ_G0022124) #22	MGP_SPRETEiJ_G0022123	Spsb3 (MGP_SPRETEiJ_G0022122) #26	Nubp2 (MGP_SPRETEiJ_G0022121) #27	Igfals (MGP_SPRETEiJ_G0022120) #28	MGP_SPRETEiJ_G0022119 #36	Ndufb10 (MGP_SPRETEiJ_G0022118) #35	MGP_SPRETEiJ_G0022117 #34	Fahd1 (MGP_SPRETEiJ_G0022116) #30	Hagh (MGP_SPRETEiJ_G0022115) #29	Meiob (MGP_SPRETEiJ_G0022114) #31	Hs3st6 (MGP_SPRETEiJ_G0022113) #32	Msrb1 (MGP_SPRETEiJ_G0022112) #33	Rnf151 (MGP_SPRETEiJ_G0022111)	Tbl3 (MGP_SPRETEiJ_G0022110) #37	Noxo1 (MGP_SPRETEiJ_G0022109)
Steppe mouse	MODERN SPECIES	3126	Ube2i (ENSMSIG00000012009) #8	Baiap3 (ENSMSIG00000011451)	ENSMSIG00000011425 #9	Gnptg (ENSMSIG00000011397) #10	ENSMSIG00000011382	Unkl (ENSMSIG00000011290) #11	ENSMSIG00000011275 #12	Ccdc154 (ENSMSIG00000011172) #14	Clcn7 (ENSMSIG00000011010) #15	Ptx4 (ENSMSIG00000010971) #16	Telo2 (ENSMSIG00000010889) #17	Tmem204 (ENSMSIG00000010873) #19	Ift140 (ENSMSIG00000010724) #18	Cramp1 (ENSMSIG00000010664) #20	ENSMSIG00000010638 #21	Mapk8ip3 (ENSMSIG00000008777) #22	Nme3 (ENSMSIG00000008746) #23	Mrps34 (ENSMSIG00000008733) #24	Eme2 (ENSMSIG00000008685) #25	ENSMSIG00000008500 #26	Nubp2 (ENSMSIG00000008482) #27	Igfals (ENSMSIG00000008467) #28	Hagh (ENSMSIG00000008421) #29	Fahd1 (ENSMSIG00000008407) #30	Meiob (ENSMSIG00000008345) #31	Hs3st6 (ENSMSIG00000008324) #32	Msrb1 (ENSMSIG00000008280) #33	Rpl3l (ENSMSIG00000008247) #34	Ndufb10 (ENSMSIG00000008241) #35	Rps2 (ENSMSIG00000008161)	Rnf151 (ENSMSIG00000008128)
Mouse	MODERN SPECIES	8	Tsr3 (ENSMUSG00000015126) #9	Gnptg (ENSMUSG00000035521) #10	Unkl (ENSMUSG00000015127) #11	Uqcc4 (ENSMUSG00000067722) #12	Percc1 (ENSMUSG00000114245) #13	Ccdc154 (ENSMUSG00000059562) #14	Clcn7 (ENSMUSG00000036636) #15	Ptx4 (ENSMUSG00000044172) #16	Telo2 (ENSMUSG00000024170) #17	Tmem204 (ENSMUSG00000024168) #19	Ift140 (ENSMUSG00000024169) #18	Cramp1 (ENSMUSG00000038002) #20	Jpt2 (ENSMUSG00000024165) #21	Nme3 (ENSMUSG00000073435) #23	Mrps34 (ENSMUSG00000038880) #24	Mapk8ip3 (ENSMUSG00000024163) #22	Eme2 (ENSMUSG00000073436) #25	Spsb3 (ENSMUSG00000024160) #26	Nubp2 (ENSMUSG00000039183) #27	Igfals (ENSMUSG00000046070) #28	Fahd1 (ENSMUSG00000045316) #30	Hagh (ENSMUSG00000024158) #29	Meiob (ENSMUSG00000024155) #31	Hs3st6 (ENSMUSG00000039628) #32	Msrb1 (ENSMUSG00000075705) #33	Rpl3l (ENSMUSG00000002500) #34	Ndufb10 (ENSMUSG00000040048) #35	Rps2 (ENSMUSG00000044533)	Rnf151 (ENSMUSG00000008482)	Tbl3 (ENSMUSG00000040688) #37	Noxo1 (ENSMUSG00000019320)
Ryukyu mouse	MODERN SPECIES	8	Tsr3 (MGP_CAROLIEiJ_G0021228) #9	Gnptg (MGP_CAROLIEiJ_G0021227) #10	MGP_CAROLIEiJ_G0021226 #11	Unkl (MGP_CAROLIEiJ_G0021225) #11	Uqcc4 (MGP_CAROLIEiJ_G0021224) #12	Ccdc154 (MGP_CAROLIEiJ_G0021223) #14	Clcn7 (MGP_CAROLIEiJ_G0021222) #15	Ptx4 (MGP_CAROLIEiJ_G0021221) #16	Telo2 (MGP_CAROLIEiJ_G0021220) #17	Tmem204 (MGP_CAROLIEiJ_G0021219) #19	Ift140 (MGP_CAROLIEiJ_G0021218) #18	Cramp1 (MGP_CAROLIEiJ_G0021217) #20	MGP_CAROLIEiJ_G0021216 #21	Nme3 (MGP_CAROLIEiJ_G0021215) #23	Mrps34 (MGP_CAROLIEiJ_G0021214) #24	Mapk8ip3 (MGP_CAROLIEiJ_G0021213) #22	Eme2 (MGP_CAROLIEiJ_G0021212) #25	MGP_CAROLIEiJ_G0021211 #26	Nubp2 (MGP_CAROLIEiJ_G0021210) #27	Igfals (MGP_CAROLIEiJ_G0021209) #28	Fahd1 (MGP_CAROLIEiJ_G0021208) #30	Hagh (MGP_CAROLIEiJ_G0021207) #29	Meiob (MGP_CAROLIEiJ_G0021206) #31	Hs3st6 (MGP_CAROLIEiJ_G0021205) #32	Msrb1 (MGP_CAROLIEiJ_G0021204) #33	Rpl3l (MGP_CAROLIEiJ_G0021203) #34	Ndufb10 (MGP_CAROLIEiJ_G0021202) #35	MGP_CAROLIEiJ_G0021201	Rnf151 (MGP_CAROLIEiJ_G0021200)	Tbl3 (MGP_CAROLIEiJ_G0021199) #37	Noxo1 (MGP_CAROLIEiJ_G0021198)
Shrew mouse	MODERN SPECIES	13	Gnptg (MGP_PahariEiJ_G0023545) #10	MGP_PahariEiJ_G0023544 #11	Unkl (MGP_PahariEiJ_G0023543) #11	Uqcc4 (MGP_PahariEiJ_G0023542) #12	Ccdc154 (MGP_PahariEiJ_G0023541) #14	Clcn7 (MGP_PahariEiJ_G0023540) #15	Ptx4 (MGP_PahariEiJ_G0023539) #16	Telo2 (MGP_PahariEiJ_G0023538) #17	Tmem204 (MGP_PahariEiJ_G0023537) #19	Ift140 (MGP_PahariEiJ_G0023536) #18	Cramp1 (MGP_PahariEiJ_G0023535) #20	MGP_PahariEiJ_G0023534 #21	MGP_PahariEiJ_G0023533 #21	Nme3 (MGP_PahariEiJ_G0023532) #23	Mrps34 (MGP_PahariEiJ_G0023531) #24	Mapk8ip3 (MGP_PahariEiJ_G0023530) #22	Eme2 (MGP_PahariEiJ_G0023529) #25	MGP_PahariEiJ_G0023528 #26	Nubp2 (MGP_PahariEiJ_G0023527) #27	Igfals (MGP_PahariEiJ_G0023526) #28	Fahd1 (MGP_PahariEiJ_G0023525) #30	Hagh (MGP_PahariEiJ_G0023524) #29	Meiob (MGP_PahariEiJ_G0023523) #31	Hs3st6 (MGP_PahariEiJ_G0023522) #32	Msrb1 (MGP_PahariEiJ_G0023521) #33	Rpl3l (MGP_PahariEiJ_G0023520) #34	Ndufb10 (MGP_PahariEiJ_G0023519) #35	MGP_PahariEiJ_G0023518	Rnf151 (MGP_PahariEiJ_G0023517)	Tbl3 (MGP_PahariEiJ_G0023516) #37	Noxo1 (MGP_PahariEiJ_G0023515)
Rat	MODERN SPECIES	1	Baiap3 (ENSRNOG00000017893)	Tsr3 (ENSRNOG00000017858) #9	Gnptg (ENSRNOG00000024455) #10	Unkl (ENSRNOG00000054605) #11	Uqcc4 (ENSRNOG00000029415) #12	Snrpc-ps3 (ENSRNOG00000017586)	Percc1 (ENSRNOG00000065484) #13	Ccdc154 (ENSRNOG00000030541) #14	Clcn7 (ENSRNOG00000016976) #15	Ptx4 (ENSRNOG00000060934) #16	Telo2 (ENSRNOG00000016774) #17	Tmem204 (ENSRNOG00000016494) #19	Ift140 (ENSRNOG00000016545) #18	Cramp1 (ENSRNOG00000024635) #20	Jpt2 (ENSRNOG00000024661) #21	Mapk8ip3 (ENSRNOG00000033568) #22	Nme3 (ENSRNOG00000015749) #23	Mrps34 (ENSRNOG00000015479) #24	Eme2 (ENSRNOG00000024867) #25	Spsb3 (ENSRNOG00000015300) #26	Nubp2 (ENSRNOG00000015090) #27	Igfals (ENSRNOG00000015061) #28	Hagh (ENSRNOG00000014743) #29	Fahd1 (ENSRNOG00000014727) #30	Meiob (ENSRNOG00000014711) #31	Hs3st6 (ENSRNOG00000014672) #32	Msrb1 (ENSRNOG00000055314) #33	Rpl3l (ENSRNOG00000014641) #34	Ndufb10 (ENSRNOG00000014568) #35	Rps2 (ENSRNOG00000014179)	Rnf151 (ENSRNOG00000014127)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1760	Prss29 (ENSNGAG00000019360)	Prss34 (ENSNGAG00000013475)	ENSNGAG00000019007 #8	Baiap3 (ENSNGAG00000024206)	Tsr3 (ENSNGAG00000003886) #9	Gnptg (ENSNGAG00000010304) #10	Unkl (ENSNGAG00000002821) #11	Uqcc4 (ENSNGAG00000024109) #12	Clcn7 (ENSNGAG00000022952) #15	Telo2 (ENSNGAG00000020065) #17	ENSNGAG00000010476 #18	Tmem204 (ENSNGAG00000016981) #19	ENSNGAG00000019576 #18	Cramp1 (ENSNGAG00000012239) #20	Jpt2 (ENSNGAG00000021166) #21	Mapk8ip3 (ENSNGAG00000021573) #22	Nme3 (ENSNGAG00000022562) #23	Mrps34 (ENSNGAG00000023629) #24	Spsb3 (ENSNGAG00000023785) #26	Nubp2 (ENSNGAG00000001165) #27	Igfals (ENSNGAG00000014838) #28	Hagh (ENSNGAG00000024100) #29	Fahd1 (ENSNGAG00000013637) #30	Meiob (ENSNGAG00000006985) #31	Hs3st6 (ENSNGAG00000011421) #32	Msrb1 (ENSNGAG00000015847) #33	Rpl3l (ENSNGAG00000023163) #34	Ndufb10 (ENSNGAG00000015798) #35	ENSNGAG00000013739	Tbl3 (ENSNGAG00000002428) #37	Rnf151 (ENSNGAG00000003547)
Lesser Egyptian jerboa	MODERN SPECIES	47	Prss28 (ENSJJAG00000008115)	ENSJJAG00000019500 #8	Baiap3 (ENSJJAG00000014083)	Tsr3 (ENSJJAG00000017912) #9	Gnptg (ENSJJAG00000015582) #10	Unkl (ENSJJAG00000011047) #11	Uqcc4 (ENSJJAG00000004240) #12	Ccdc154 (ENSJJAG00000000910) #14	Clcn7 (ENSJJAG00000022469) #15	Ptx4 (ENSJJAG00000023455) #16	Telo2 (ENSJJAG00000019914) #17	Ift140 (ENSJJAG00000015483) #18	Tmem204 (ENSJJAG00000016676) #19	Cramp1 (ENSJJAG00000019556) #20	ENSJJAG00000022922 #21	Mapk8ip3 (ENSJJAG00000012043) #22	Nme3 (ENSJJAG00000014938) #23	Mrps34 (ENSJJAG00000016768) #24	Eme2 (ENSJJAG00000022042) #25	Spsb3 (ENSJJAG00000005206) #26	Nubp2 (ENSJJAG00000010092) #27	Igfals (ENSJJAG00000014391) #28	ENSJJAG00000018924 #29	Fahd1 (ENSJJAG00000012552) #30	Meiob (ENSJJAG00000020956) #31	Hs3st6 (ENSJJAG00000018711) #32	Msrb1 (ENSJJAG00000023868) #33	Rpl3l (ENSJJAG00000011979) #34	ENSJJAG00000011730 #35	ENSJJAG00000011197	Rnf151 (ENSJJAG00000006822)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.n #35	ENSGT00940000153095.g.b.a.b.h	ENSGT00390000006348.m #35
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.n #35	ENSGT00940000153095.g.b.a.b.h	ENSGT00530000063647.A.a
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.n #35	ENSGT00940000153095.g.b.a.b.h	ENSGT00530000063647.A.a
Long-tailed chinchilla	MODERN SPECIES	149	ENSCLAG00000015166	UBE2I (ENSCLAG00000015675) #8	BAIAP3 (ENSCLAG00000014438)	TSR3 (ENSCLAG00000013022) #9	GNPTG (ENSCLAG00000012982) #10	UNKL (ENSCLAG00000015420) #11	UQCC4 (ENSCLAG00000016079) #12	CCDC154 (ENSCLAG00000013674) #14	CLCN7 (ENSCLAG00000014385) #15	PTX4 (ENSCLAG00000015124) #16	TELO2 (ENSCLAG00000012862) #17	TMEM204 (ENSCLAG00000015782) #19	IFT140 (ENSCLAG00000013535) #18	CRAMP1 (ENSCLAG00000013881) #20	JPT2 (ENSCLAG00000014793) #21	MAPK8IP3 (ENSCLAG00000014643) #22	NME3 (ENSCLAG00000015018) #23	MRPS34 (ENSCLAG00000015224) #24	EME2 (ENSCLAG00000015876) #25	SPSB3 (ENSCLAG00000013801) #26	NUBP2 (ENSCLAG00000015595) #27	IGFALS (ENSCLAG00000014739) #28	HAGH (ENSCLAG00000013689) #29	ENSCLAG00000012822 #31	HS3ST6 (ENSCLAG00000011879) #32	MSRB1 (ENSCLAG00000016348) #33	RPL3L (ENSCLAG00000015614) #34	ENSCLAG00000016182	NDUFB10 (ENSCLAG00000013856) #35	ENSCLAG00000016080	RNF151 (ENSCLAG00000014779)
Degu	MODERN SPECIES	62	ENSODEG00000016190 #8	BAIAP3 (ENSODEG00000015393)	TSR3 (ENSODEG00000014546) #9	GNPTG (ENSODEG00000015470) #10	UNKL (ENSODEG00000017747) #11	UQCC4 (ENSODEG00000014612) #12	ENSODEG00000020180	CCDC154 (ENSODEG00000015378) #14	CLCN7 (ENSODEG00000014485) #15	PTX4 (ENSODEG00000014551) #16	TELO2 (ENSODEG00000014830) #17	TMEM204 (ENSODEG00000015065) #19	IFT140 (ENSODEG00000015652) #18	CRAMP1 (ENSODEG00000014456) #20	JPT2 (ENSODEG00000016076) #21	MAPK8IP3 (ENSODEG00000016004) #22	NME3 (ENSODEG00000015019) #23	MRPS34 (ENSODEG00000015453) #24	EME2 (ENSODEG00000015003) #25	SPSB3 (ENSODEG00000014798) #26	NUBP2 (ENSODEG00000014655) #27	IGFALS (ENSODEG00000014585) #28	HAGH (ENSODEG00000014503) #29	FAHD1 (ENSODEG00000020210) #30	ENSODEG00000013846 #31	ENSODEG00000020141	HS3ST6 (ENSODEG00000013773) #32	ENSODEG00000014218 #33	RPL3L (ENSODEG00000015166) #34	ENSODEG00000013906	RNF151 (ENSODEG00000014607)
Guinea pig	MODERN SPECIES	4	ENSCPOG00000014280	UBE2I (ENSCPOG00000035983) #8	BAIAP3 (ENSCPOG00000010436)	TSR3 (ENSCPOG00000010452) #9	GNPTG (ENSCPOG00000014046) #10	UNKL (ENSCPOG00000011846) #11	UQCC4 (ENSCPOG00000031653) #12	CCDC154 (ENSCPOG00000012968) #14	CLCN7 (ENSCPOG00000012975) #15	PTX4 (ENSCPOG00000007357) #16	TELO2 (ENSCPOG00000003304) #17	IFT140 (ENSCPOG00000003314) #18	TMEM204 (ENSCPOG00000030328) #19	CRAMP1 (ENSCPOG00000005336) #20	JPT2 (ENSCPOG00000032923) #21	MAPK8IP3 (ENSCPOG00000005354) #22	NME3 (ENSCPOG00000035161) #23	MRPS34 (ENSCPOG00000005379) #24	EME2 (ENSCPOG00000032066) #25	SPSB3 (ENSCPOG00000026170) #26	NUBP2 (ENSCPOG00000008071) #27	IGFALS (ENSCPOG00000033322) #28	HAGH (ENSCPOG00000024438) #29	ENSCPOG00000001543 #31	HS3ST6 (ENSCPOG00000014346) #32	MSRB1 (ENSCPOG00000011627) #33	RPL3L (ENSCPOG00000011631) #34	NDUFB10 (ENSCPOG00000038375) #35	ENSCPOG00000011651	RNF151 (ENSCPOG00000011654)	TBL3 (ENSCPOG00000005998) #37
Naked mole-rat female	MODERN SPECIES	15	CDC45 (ENSHGLG00000015159)	ENSHGLG00000014850	C22orf39 (ENSHGLG00000035091)	MRPL40 (ENSHGLG00000039126)	ENSHGLG00000010841	ENSHGLG00000013734	ENSHGLG00000009422	ENSHGLG00000047283	ENSHGLG00000037724	ENSHGLG00000002228 #16	ENSHGLG00000047108 #17	IFT140 (ENSHGLG00000002078) #18	TMEM204 (ENSHGLG00000032434) #19	CRAMP1 (ENSHGLG00000001969) #20	JPT2 (ENSHGLG00000046712) #21	MAPK8IP3 (ENSHGLG00000001589) #22	NME3 (ENSHGLG00000001237) #23	MRPS34 (ENSHGLG00000001213) #24	EME2 (ENSHGLG00000038718) #25	SPSB3 (ENSHGLG00000001146) #26	NUBP2 (ENSHGLG00000004842) #27	IGFALS (ENSHGLG00000004496) #28	HAGH (ENSHGLG00000003923) #29	FAHD1 (ENSHGLG00000041252) #30	ENSHGLG00000003597 #31	HS3ST6 (ENSHGLG00000039701) #32	RPL3L (ENSHGLG00000003329) #34	ENSHGLG00000003234 #35	ENSHGLG00000002542	ENSHGLG00000002492	TBL3 (ENSHGLG00000002431) #37
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00910000147428	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Marmotini	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a.m.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00550000075088.a.a.m.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.a.b	ENSGT00530000063647.A.a
Squirrel	MODERN SPECIES	294	Ube2i (ENSSTOG00000010233) #8	BAIAP3 (ENSSTOG00000015767)	TSR3 (ENSSTOG00000015781) #9	GNPTG (ENSSTOG00000019834) #10	UNKL (ENSSTOG00000003487) #11	UQCC4 (ENSSTOG00000003515) #12	CCDC154 (ENSSTOG00000003540) #14	CLCN7 (ENSSTOG00000023676) #15	PTX4 (ENSSTOG00000003603) #16	TELO2 (ENSSTOG00000003610) #17	TMEM204 (ENSSTOG00000021652) #19	IFT140 (ENSSTOG00000003636) #18	CRAMP1 (ENSSTOG00000003675) #20	ENSSTOG00000025346	JPT2 (ENSSTOG00000003729) #21	MAPK8IP3 (ENSSTOG00000003734) #22	NME3 (ENSSTOG00000028986) #23	MRPS34 (ENSSTOG00000021586) #24	EME2 (ENSSTOG00000000961) #25	SPSB3 (ENSSTOG00000021171) #26	NUBP2 (ENSSTOG00000026670) #27	IGFALS (ENSSTOG00000027057) #28	HAGH (ENSSTOG00000009109) #29	ENSSTOG00000020433 #31	HS3ST6 (ENSSTOG00000012919) #32	MSRB1 (ENSSTOG00000034478) #33	RPL3L (ENSSTOG00000012921) #34	NDUFB10 (ENSSTOG00000012938) #35	ENSSTOG00000012944	ENSSTOG00000023350	TBL3 (ENSSTOG00000012964) #37
Arctic ground squirrel	MODERN SPECIES	37	ENSUPAG00010014457 #8	ENSUPAG00010014489	TSR3 (ENSUPAG00010014534) #9	GNPTG (ENSUPAG00010014541) #10	UNKL (ENSUPAG00010014554) #11	UQCC4 (ENSUPAG00010014604) #12	PERCC1 (ENSUPAG00010014611) #13	CCDC154 (ENSUPAG00010014614) #14	CLCN7 (ENSUPAG00010014777) #15	ENSUPAG00010014893	TELO2 (ENSUPAG00010014896) #17	IFT140 (ENSUPAG00010014979) #18	TMEM204 (ENSUPAG00010015069) #19	CRAMP1 (ENSUPAG00010015084) #20	JPT2 (ENSUPAG00010015162) #21	MAPK8IP3 (ENSUPAG00010015185) #22	NME3 (ENSUPAG00010016324) #23	ENSUPAG00010016348 #24	EME2 (ENSUPAG00010016365) #25	SPSB3 (ENSUPAG00010016383) #26	NUBP2 (ENSUPAG00010016409) #27	ENSUPAG00010016447 #28	HAGH (ENSUPAG00010016451) #29	FAHD1 (ENSUPAG00010016476) #30	ENSUPAG00010016481 #31	HS3ST6 (ENSUPAG00010016522) #32	MSRB1 (ENSUPAG00010016532) #33	RPL3L (ENSUPAG00010016544) #34	NDUFB10 (ENSUPAG00010016562) #35	RPS2 (ENSUPAG00010016573)	RNF151 (ENSUPAG00010016927)
Alpin marmot	MODERN SPECIES	28	ENSMMMG00000015935 #8	ENSMMMG00000015930	ENSMMMG00000015922	TSR3 (ENSMMMG00000015912) #9	UNKL (ENSMMMG00000015853) #11	UQCC4 (ENSMMMG00000015846) #12	PERCC1 (ENSMMMG00000015837) #13	CCDC154 (ENSMMMG00000015727) #14	CLCN7 (ENSMMMG00000015689) #15	PTX4 (ENSMMMG00000015680) #16	TELO2 (ENSMMMG00000015629) #17	TMEM204 (ENSMMMG00000015619) #19	IFT140 (ENSMMMG00000015580) #18	CRAMP1 (ENSMMMG00000015511) #20	JPT2 (ENSMMMG00000015507) #21	MAPK8IP3 (ENSMMMG00000011208) #22	MRPS34 (ENSMMMG00000011168) #24	EME2 (ENSMMMG00000011151) #25	SPSB3 (ENSMMMG00000011143) #26	NUBP2 (ENSMMMG00000011128) #27	IGFALS (ENSMMMG00000011124) #28	HAGH (ENSMMMG00000011110) #29	FAHD1 (ENSMMMG00000011106) #30	ENSMMMG00000011082 #31	HS3ST6 (ENSMMMG00000011071) #32	MSRB1 (ENSMMMG00000011047) #33	RPL3L (ENSMMMG00000011010) #34	NDUFB10 (ENSMMMG00000010988) #35	RPS2 (ENSMMMG00000010948)	RNF151 (ENSMMMG00000010935)	NOXO1 (ENSMMMG00000010886)
Eurasian red squirrel	MODERN SPECIES	9	UBE2I (ENSSVLG00005024408) #8	TSR3 (ENSSVLG00005024904) #9	GNPTG (ENSSVLG00005024947) #10	ENSSVLG00005024973	UNKL (ENSSVLG00005017152) #11	UQCC4 (ENSSVLG00005017225) #12	PERCC1 (ENSSVLG00005017276) #13	CCDC154 (ENSSVLG00005017302) #14	CLCN7 (ENSSVLG00005017491) #15	PTX4 (ENSSVLG00005017820) #16	TELO2 (ENSSVLG00005017874) #17	IFT140 (ENSSVLG00005017909) #18	TMEM204 (ENSSVLG00005017964) #19	CRAMP1 (ENSSVLG00005018001) #20	JPT2 (ENSSVLG00005018232) #21	MAPK8IP3 (ENSSVLG00005018319) #22	NME3 (ENSSVLG00005018434) #23	MRPS34 (ENSSVLG00005018518) #24	EME2 (ENSSVLG00005018557) #25	NUBP2 (ENSSVLG00005018731) #27	IGFALS (ENSSVLG00005018848) #28	HAGH (ENSSVLG00005018908) #29	ENSSVLG00005019134 #30	ENSSVLG00005019191 #31	HS3ST6 (ENSSVLG00005019256) #32	MSRB1 (ENSSVLG00005019321) #33	RPL3L (ENSSVLG00005019463) #34	NDUFB10 (ENSSVLG00005019544) #35	ENSSVLG00005019653	RNF151 (ENSSVLG00005019772)	NOXO1 (ENSSVLG00005020093)
Lagomorpha	ANCESTRAL SPECIES	288										ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23
Pika	MODERN SPECIES	5282											ENSOPRG00000001256 #17	IFT140 (ENSOPRG00000001292) #18	TMEM204 (ENSOPRG00000001339) #19	CRAMP1 (ENSOPRG00000001343) #20	JPT2 (ENSOPRG00000001384) #21	MAPK8IP3 (ENSOPRG00000001394) #22	NME3 (ENSOPRG00000001474) #23
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Camelidae	ANCESTRAL SPECIES	33	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Arabian camel	MODERN SPECIES	41	UBE2I (ENSCDRG00005015631) #8	BAIAP3 (ENSCDRG00005008932)	TSR3 (ENSCDRG00005009515) #9	GNPTG (ENSCDRG00005009569) #10	UNKL (ENSCDRG00005009857) #11	UQCC4 (ENSCDRG00005009947) #12	PERCC1 (ENSCDRG00005009982) #13	CCDC154 (ENSCDRG00005010003) #14	CLCN7 (ENSCDRG00005010187) #15	PTX4 (ENSCDRG00005010607) #16	TELO2 (ENSCDRG00005010691) #17	IFT140 (ENSCDRG00005010873) #18	TMEM204 (ENSCDRG00005011342) #19	CRAMP1 (ENSCDRG00005011383) #20	JPT2 (ENSCDRG00005011470) #21	MAPK8IP3 (ENSCDRG00005011576) #22	NME3 (ENSCDRG00005011755) #23	MRPS34 (ENSCDRG00005011817) #24	EME2 (ENSCDRG00005011861) #25	SPSB3 (ENSCDRG00005011937) #26	NUBP2 (ENSCDRG00005012000) #27	IGFALS (ENSCDRG00005012131) #28	HAGH (ENSCDRG00005012164) #29	FAHD1 (ENSCDRG00005012307) #30	ENSCDRG00005012343 #31	HS3ST6 (ENSCDRG00005012599) #32	MSRB1 (ENSCDRG00005012709) #33	RPL3L (ENSCDRG00005012772) #34	NDUFB10 (ENSCDRG00005012823) #35	RPS2 (ENSCDRG00005012917)	RNF151 (ENSCDRG00005013092)
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Pecora	ANCESTRAL SPECIES	10	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b	ENSGT00940000153095.g.b.a.a.b
Percora_a	ANCESTRAL SPECIES	9	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00940000153095.g.b.a.a.b
Siberian musk deer	MODERN SPECIES		BAIAP3 (ENSMMSG00000002183)	TSR3 (ENSMMSG00000002150) #9	GNPTG (ENSMMSG00000002130) #10	UNKL (ENSMMSG00000002072) #11	ENSMMSG00000002044 #12	PERCC1 (ENSMMSG00000002030) #13	CCDC154 (ENSMMSG00000002000) #14	CLCN7 (ENSMMSG00000001887) #15	PTX4 (ENSMMSG00000001845) #16	TELO2 (ENSMMSG00000001817) #17	TMEM204 (ENSMMSG00000001793) #19	IFT140 (ENSMMSG00000001736) #18	CRAMP1 (ENSMMSG00000001672) #20	JPT2 (ENSMMSG00000001637) #21	ENSMMSG00000001612	MAPK8IP3 (ENSMMSG00000001572) #22	NME3 (ENSMMSG00000001535) #23	ENSMMSG00000001526 #24	EME2 (ENSMMSG00000001510) #25	SPSB3 (ENSMMSG00000001495) #26	NUBP2 (ENSMMSG00000001476) #27	IGFALS (ENSMMSG00000001466) #28	HAGH (ENSMMSG00000001440) #29	FAHD1 (ENSMMSG00000001429) #30	ENSMMSG00000001365 #31	HS3ST6 (ENSMMSG00000001346) #32	MSRB1 (ENSMMSG00000001336) #33	RPL3L (ENSMMSG00000001316) #34	NDUFB10 (ENSMMSG00000001294) #35	ENSMMSG00000001250	RNF151 (ENSMMSG00000001215)
Bovidae	ANCESTRAL SPECIES	11	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b	ENSGT00940000153095.g.b.a.a.b
Caprinae	ANCESTRAL SPECIES	7	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Goat	MODERN SPECIES	17	ENSCHIG00000013659	UBE2I (ENSCHIG00000017670) #8	BAIAP3 (ENSCHIG00000015762)	TSR3 (ENSCHIG00000016515) #9	GNPTG (ENSCHIG00000012080) #10	UNKL (ENSCHIG00000025940) #11	UQCC4 (ENSCHIG00000017912) #12	CCDC154 (ENSCHIG00000013668) #14	CLCN7 (ENSCHIG00000016124) #15	PTX4 (ENSCHIG00000010150) #16	TELO2 (ENSCHIG00000012866) #17	IFT140 (ENSCHIG00000017137) #18	TMEM204 (ENSCHIG00000008739) #19	CRAMP1 (ENSCHIG00000001484) #20	JPT2 (ENSCHIG00000009778) #21	MAPK8IP3 (ENSCHIG00000020649) #22	NME3 (ENSCHIG00000020916) #23	MRPS34 (ENSCHIG00000026940) #24	SPSB3 (ENSCHIG00000024292) #26	NUBP2 (ENSCHIG00000024194) #27	IGFALS (ENSCHIG00000005524) #28	HAGH (ENSCHIG00000022722) #29	FAHD1 (ENSCHIG00000007917) #30	ENSCHIG00000013357 #31	HS3ST6 (ENSCHIG00000019888) #32	RPL3L (ENSCHIG00000020352) #34	MSRB1 (ENSCHIG00000018373) #33	NDUFB10 (ENSCHIG00000017852) #35	ENSCHIG00000022194	RNF151 (ENSCHIG00000015860)	TBL3 (ENSCHIG00000007747) #37
Rambouillet Sheep	MODERN SPECIES	16	UBE2I (ENSOARG00020026231) #8	BAIAP3 (ENSOARG00020026237)	TSR3 (ENSOARG00020026242) #9	ENSOARG00020026244	UNKL (ENSOARG00020026245) #11	UQCC4 (ENSOARG00020026247) #12	PERCC1 (ENSOARG00020026249) #13	CCDC154 (ENSOARG00020026252) #14	CLCN7 (ENSOARG00020026257) #15	PTX4 (ENSOARG00020026260) #16	TELO2 (ENSOARG00020026262) #17	IFT140 (ENSOARG00020026264) #18	TMEM204 (ENSOARG00020026266) #19	CRAMP1 (ENSOARG00020026270) #20	JPT2 (ENSOARG00020026280) #21	MAPK8IP3 (ENSOARG00020026283) #22	NME3 (ENSOARG00020026291) #23	MRPS34 (ENSOARG00020026293) #24	EME2 (ENSOARG00020026295) #25	SPSB3 (ENSOARG00020026298) #26	NUBP2 (ENSOARG00020026299) #27	IGFALS (ENSOARG00020026302) #28	HAGH (ENSOARG00020026306) #29	FAHD1 (ENSOARG00020026309) #30	ENSOARG00020026311 #31	HS3ST6 (ENSOARG00020026315) #32	MSRB1 (ENSOARG00020026316) #33	RPL3L (ENSOARG00020026318) #34	NDUFB10 (ENSOARG00020026321) #35	ENSOARG00020026326	RNF151 (ENSOARG00020026336)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b.e	ENSGT00940000153095.g.b.a.a.b
Bos	ANCESTRAL SPECIES	9	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b.e	ENSGT00940000153095.g.b.a.a.b
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000158868.g.b	ENSGT00550000075088.a.a.ob.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Cow	MODERN SPECIES	17	ENSBTAG00000046965	UBE2I (ENSBTAG00000038866)	BAIAP3 (ENSBTAG00000014100)	TSR3 (ENSBTAG00000014101) #9	ENSBTAG00000051573	UNKL (ENSBTAG00000014126) #11	UQCC4 (ENSBTAG00000033395) #12	CCDC154 (ENSBTAG00000000568) #14	CLCN7 (ENSBTAG00000015889) #15	PTX4 (ENSBTAG00000005148) #16	TELO2 (ENSBTAG00000019086) #17	IFT140 (ENSBTAG00000007245) #18	TMEM204 (ENSBTAG00000007246) #19	CRAMP1 (ENSBTAG00000002202) #20	JPT2 (ENSBTAG00000002209) #21	MAPK8IP3 (ENSBTAG00000002211) #22	ENSBTAG00000052060	NME3 (ENSBTAG00000016552) #23	MRPS34 (ENSBTAG00000026415) #24	EME2 (ENSBTAG00000016553) #25	SPSB3 (ENSBTAG00000016558) #26	NUBP2 (ENSBTAG00000016561) #27	IGFALS (ENSBTAG00000033299) #28	HAGH (ENSBTAG00000019998) #29	FAHD1 (ENSBTAG00000033015) #30	MEIOB (ENSBTAG00000020001) #31	HS3ST6 (ENSBTAG00000019249) #32	MSRB1 (ENSBTAG00000049306) #33	RPL3L (ENSBTAG00000009533) #34	NDUFB10 (ENSBTAG00000009534) #35	RPS2 (ENSBTAG00000009535)
Hybrid Bos Indicus	MODERN SPECIES	17	ENSBIXG00005002428 #8	BAIAP3 (ENSBIXG00005006545)	TSR3 (ENSBIXG00005002420) #9	UNKL (ENSBIXG00005028682) #11	UQCC4 (ENSBIXG00005028709) #12	CCDC154 (ENSBIXG00005004984) #14	CLCN7 (ENSBIXG00005028927) #15	PTX4 (ENSBIXG00005002161) #16	TELO2 (ENSBIXG00005005091) #17	TMEM204 (ENSBIXG00005002103) #19	IFT140 (ENSBIXG00005002075) #18	CRAMP1 (ENSBIXG00005029023) #20	ENSBIXG00005029033	JPT2 (ENSBIXG00005005130) #21	ENSBIXG00005029057	MAPK8IP3 (ENSBIXG00005029132) #22	NME3 (ENSBIXG00005005200) #23	ENSBIXG00005001802 #24	SPSB3 (ENSBIXG00005001778) #26	EME2 (ENSBIXG00005029199) #25	IGFALS (ENSBIXG00005001646) #28	HAGH (ENSBIXG00005029215) #29	FAHD1 (ENSBIXG00005029225) #30	ENSBIXG00005005270 #31	HS3ST6 (ENSBIXG00005005277) #32	MSRB1 (ENSBIXG00005030323) #33	RPL3L (ENSBIXG00005030313) #34	NDUFB10 (ENSBIXG00005030305) #35	ENSBIXG00005030271	RNF151 (ENSBIXG00005030248)	NOXO1 (ENSBIXG00005030231)
Bos_a	ANCESTRAL SPECIES	13	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00960000190820	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.b.e	ENSGT00530000063647.A.a
Domestic yak	MODERN SPECIES	18	BAIAP3 (ENSBGRG00000026523)	TSR3 (ENSBGRG00000026507) #9	ENSBGRG00000026483 #10	ENSBGRG00000026477	UNKL (ENSBGRG00000026455) #11	UQCC4 (ENSBGRG00000026446) #12	PERCC1 (ENSBGRG00000026443) #13	CCDC154 (ENSBGRG00000026436) #14	CLCN7 (ENSBGRG00000026391) #15	PTX4 (ENSBGRG00000026360) #16	TELO2 (ENSBGRG00000026295) #17	TMEM204 (ENSBGRG00000026263) #19	ENSBGRG00000026261 #18	CRAMP1 (ENSBGRG00000026195) #20	JPT2 (ENSBGRG00000026177) #21	ENSBGRG00000026167 #22	NME3 (ENSBGRG00000026159) #23	MRPS34 (ENSBGRG00000026152) #24	EME2 (ENSBGRG00000026143) #25	SPSB3 (ENSBGRG00000026135) #26	NUBP2 (ENSBGRG00000026125) #27	IGFALS (ENSBGRG00000026120) #28	HAGH (ENSBGRG00000026102) #29	FAHD1 (ENSBGRG00000026099) #30	ENSBGRG00000026058 #31	HS3ST6 (ENSBGRG00000026037) #32	MSRB1 (ENSBGRG00000026025) #33	RPL3L (ENSBGRG00000026001) #34	NDUFB10 (ENSBGRG00000025973) #35	ENSBGRG00000025950	RNF151 (ENSBGRG00000025932)
Wild yak	MODERN SPECIES	26	ENSBMUG00000022756 #8	BAIAP3 (ENSBMUG00000022642)	TSR3 (ENSBMUG00000022273) #9	ENSBMUG00000022218	UNKL (ENSBMUG00000022212) #11	UQCC4 (ENSBMUG00000022202) #12	CCDC154 (ENSBMUG00000022178) #14	CLCN7 (ENSBMUG00000022135) #15	ENSBMUG00000022093	ENSBMUG00000022086	TELO2 (ENSBMUG00000022079) #17	TMEM204 (ENSBMUG00000022060) #19	IFT140 (ENSBMUG00000022034) #18	CRAMP1 (ENSBMUG00000021918) #20	JPT2 (ENSBMUG00000021647) #21	MAPK8IP3 (ENSBMUG00000020161) #22	ENSBMUG00000018193 #23	MRPS34 (ENSBMUG00000018185) #24	EME2 (ENSBMUG00000018170) #25	SPSB3 (ENSBMUG00000018145) #26	NUBP2 (ENSBMUG00000018133) #27	IGFALS (ENSBMUG00000018107) #28	HAGH (ENSBMUG00000018096) #29	FAHD1 (ENSBMUG00000018088) #30	ENSBMUG00000018062 #31	HS3ST6 (ENSBMUG00000018022) #32	MSRB1 (ENSBMUG00000018003) #33	RPL3L (ENSBMUG00000017984) #34	NDUFB10 (ENSBMUG00000017948) #35	ENSBMUG00000017908	RNF151 (ENSBMUG00000017871)
American bison	MODERN SPECIES	2098											TELO2 (ENSBBBG00000007334) #17	ENSBBBG00000022511 #18	TMEM204 (ENSBBBG00000022464) #19	CRAMP1 (ENSBBBG00000022440) #20	JPT2 (ENSBBBG00000022366) #21	ENSBBBG00000022347 #22	ENSBBBG00000005890 #23	MRPS34 (ENSBBBG00000005888) #24
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1	TSR3 (ENSCHYG00000000981) #9	GNPTG (ENSCHYG00000000992) #10	UNKL (ENSCHYG00000001093) #11	UQCC4 (ENSCHYG00000001141) #12	PERCC1 (ENSCHYG00000001151) #13	CCDC154 (ENSCHYG00000001172) #14	CLCN7 (ENSCHYG00000001248) #15	PTX4 (ENSCHYG00000001547) #16	TELO2 (ENSCHYG00000001588) #17	ENSCHYG00000001722 #18	ENSCHYG00000001737 #19	ENSCHYG00000001757 #18	CRAMP1 (ENSCHYG00000001817) #20	ENSCHYG00000001980 #21	ENSCHYG00000002004 #22	ENSCHYG00000002013 #22	NME3 (ENSCHYG00000002029) #23	MRPS34 (ENSCHYG00000002055) #24	ENSCHYG00000002065 #25	ENSCHYG00000002081 #26	NUBP2 (ENSCHYG00000002104) #27	IGFALS (ENSCHYG00000002142) #28	HAGH (ENSCHYG00000002161) #29	FAHD1 (ENSCHYG00000002322) #30	ENSCHYG00000002342 #31	HS3ST6 (ENSCHYG00000002357) #32	MSRB1 (ENSCHYG00000002367) #33	RPL3L (ENSCHYG00000002392) #34	NDUFB10 (ENSCHYG00000002424) #35	ENSCHYG00000002454	RNF151 (ENSCHYG00000002494)
Yarkand deer	MODERN SPECIES	1	BAIAP3 (ENSCHYG00000000754)	TSR3 (ENSCHYG00000000981) #9	GNPTG (ENSCHYG00000000992) #10	UNKL (ENSCHYG00000001093) #11	UQCC4 (ENSCHYG00000001141) #12	PERCC1 (ENSCHYG00000001151) #13	CCDC154 (ENSCHYG00000001172) #14	CLCN7 (ENSCHYG00000001248) #15	PTX4 (ENSCHYG00000001547) #16	TELO2 (ENSCHYG00000001588) #17	ENSCHYG00000001722 #18	ENSCHYG00000001737 #19	ENSCHYG00000001757 #18	CRAMP1 (ENSCHYG00000001817) #20	ENSCHYG00000001980 #21	ENSCHYG00000002004 #22	ENSCHYG00000002013 #22	NME3 (ENSCHYG00000002029) #23	MRPS34 (ENSCHYG00000002055) #24	ENSCHYG00000002065 #25	ENSCHYG00000002081 #26	NUBP2 (ENSCHYG00000002104) #27	IGFALS (ENSCHYG00000002142) #28	HAGH (ENSCHYG00000002161) #29	FAHD1 (ENSCHYG00000002322) #30	ENSCHYG00000002342 #31	HS3ST6 (ENSCHYG00000002357) #32	MSRB1 (ENSCHYG00000002367) #33	RPL3L (ENSCHYG00000002392) #34	NDUFB10 (ENSCHYG00000002424) #35	ENSCHYG00000002454
Cetacea	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	6	ENSBMSG00010022153	ENSBMSG00010022163	UBE2I (ENSBMSG00010009619) #8	BAIAP3 (ENSBMSG00010009701)	TSR3 (ENSBMSG00010010039) #9	GNPTG (ENSBMSG00010010050) #10	UNKL (ENSBMSG00010010085) #11	UQCC4 (ENSBMSG00010010125) #12	PERCC1 (ENSBMSG00010010139) #13	CLCN7 (ENSBMSG00010010255) #15	TELO2 (ENSBMSG00010010337) #17	IFT140 (ENSBMSG00010010364) #18	TMEM204 (ENSBMSG00010010376) #19	CRAMP1 (ENSBMSG00010010410) #20	JPT2 (ENSBMSG00010010484) #21	ENSBMSG00010010504 #22	NME3 (ENSBMSG00010010525) #23	MRPS34 (ENSBMSG00010010537) #24	SPSB3 (ENSBMSG00010010546) #26	NUBP2 (ENSBMSG00010010561) #27	IGFALS (ENSBMSG00010010573) #28	HAGH (ENSBMSG00010010591) #29	FAHD1 (ENSBMSG00010010608) #30	ENSBMSG00010010669 #31	HS3ST6 (ENSBMSG00010010685) #32	MSRB1 (ENSBMSG00010010701) #33	RPL3L (ENSBMSG00010010716) #34	NDUFB10 (ENSBMSG00010010734) #35	ENSBMSG00010010763	RNF151 (ENSBMSG00010010820)	TBL3 (ENSBMSG00010010856) #37
Blue whale	MODERN SPECIES	13	ENSBMSG00010014343	TEX15 (ENSBMSG00010014389)	PURG (ENSBMSG00010014438)	WRN (ENSBMSG00010014474)	NRG1 (ENSBMSG00010014675)	ENSBMSG00010015301	ENSBMSG00010015316	FUT10 (ENSBMSG00010015342)	MAK16 (ENSBMSG00010015377)	TTI2 (ENSBMSG00010015408)	ENSBMSG00010015446	DUSP26 (ENSBMSG00010015488)	ENSBMSG00010015521	UNC5D (ENSBMSG00010015617)	ENSBMSG00010015995	ENSBMSG00010016002 #22	ENSBMSG00010016024	KCNU1 (ENSBMSG00010016059)	ENSBMSG00010016178	ENSBMSG00010016207	ZNF703 (ENSBMSG00010016237)	ERLIN2 (ENSBMSG00010016263)	PLPBP (ENSBMSG00010016317)	ADGRA2 (ENSBMSG00010016355)	BRF2 (ENSBMSG00010016388)	ENSBMSG00010016415	GOT1L1 (ENSBMSG00010016452)	ADRB3 (ENSBMSG00010016494)	EIF4EBP1 (ENSBMSG00010016512)	ENSBMSG00010016541	ENSBMSG00010016606
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a
Dolphin	MODERN SPECIES	2804													ENSTTRG00000011369	CRAMP1 (ENSTTRG00000011376) #20	HN1L (ENSTTRG00000011377) #21	MAPK8IP3 (ENSTTRG00000011379) #22	NME3 (ENSTTRG00000011380) #23	MRPS34 (ENSTTRG00000011381) #24	EME2 (ENSTTRG00000011382) #25	SPSB3 (ENSTTRG00000011383) #26	NUBP2 (ENSTTRG00000011384) #27	IGFALS (ENSTTRG00000011385) #28	HAGH (ENSTTRG00000011386) #29	FAHD1 (ENSTTRG00000011387) #30	ENSTTRG00000011388 #31	HS3ST6 (ENSTTRG00000011389) #32	ENSTTRG00000011390 #33	RPL3L (ENSTTRG00000011391) #34	NDUFB10 (ENSTTRG00000011392) #35	RPS2 (ENSTTRG00000011393)	RNF151 (ENSTTRG00000011394)
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Vaquita	MODERN SPECIES	6	ENSPSNG00000007742	UBE2I (ENSPSNG00000007796) #8	BAIAP3 (ENSPSNG00000007889)	TSR3 (ENSPSNG00000008704) #9	GNPTG (ENSPSNG00000008733) #10	UNKL (ENSPSNG00000008782) #11	UQCC4 (ENSPSNG00000008842) #12	PERCC1 (ENSPSNG00000008871) #13	CLCN7 (ENSPSNG00000009258) #15	ENSPSNG00000009353	TELO2 (ENSPSNG00000009395) #17	IFT140 (ENSPSNG00000009483) #18	TMEM204 (ENSPSNG00000009646) #19	CRAMP1 (ENSPSNG00000009750) #20	JPT2 (ENSPSNG00000010117) #21	MAPK8IP3 (ENSPSNG00000010221) #22	NME3 (ENSPSNG00000010342) #23	MRPS34 (ENSPSNG00000010465) #24	SPSB3 (ENSPSNG00000010505) #26	NUBP2 (ENSPSNG00000010556) #27	IGFALS (ENSPSNG00000010635) #28	HAGH (ENSPSNG00000010692) #29	FAHD1 (ENSPSNG00000010819) #30	ENSPSNG00000010896 #31	HS3ST6 (ENSPSNG00000011004) #32	MSRB1 (ENSPSNG00000011031) #33	RPL3L (ENSPSNG00000011070) #34	NDUFB10 (ENSPSNG00000011191) #35	RPS2 (ENSPSNG00000011290)	RNF151 (ENSPSNG00000011420)	TBL3 (ENSPSNG00000011502) #37
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b.l	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Narwhal	MODERN SPECIES	299	UBE2I (ENSMMNG00015002771) #8	BAIAP3 (ENSMMNG00015002823)	TSR3 (ENSMMNG00015002901) #9	GNPTG (ENSMMNG00015002928) #10	UNKL (ENSMMNG00015002979) #11	UQCC4 (ENSMMNG00015003011) #12	PERCC1 (ENSMMNG00015003027) #13	CCDC154 (ENSMMNG00015003052) #14	CLCN7 (ENSMMNG00015003119) #15	PTX4 (ENSMMNG00015003188) #16	TELO2 (ENSMMNG00015003226) #17	IFT140 (ENSMMNG00015003282) #18	TMEM204 (ENSMMNG00015003375) #19	CRAMP1 (ENSMMNG00015003411) #20	JPT2 (ENSMMNG00015003456) #21	ENSMMNG00015003486 #22	NME3 (ENSMMNG00015003514) #23	MRPS34 (ENSMMNG00015003531) #24	ENSMMNG00015003543	SPSB3 (ENSMMNG00015003567) #26	NUBP2 (ENSMMNG00015003598) #27	IGFALS (ENSMMNG00015003621) #28	HAGH (ENSMMNG00015003649) #29	FAHD1 (ENSMMNG00015003677) #30	ENSMMNG00015003718 #31	HS3ST6 (ENSMMNG00015003744) #32	MSRB1 (ENSMMNG00015003761) #33	RPL3L (ENSMMNG00015003791) #34	NDUFB10 (ENSMMNG00015003819) #35	ENSMMNG00015003862	RNF151 (ENSMMNG00015003919)
Beluga whale	MODERN SPECIES	48	ENSDLEG00000007070	UBE2I (ENSDLEG00000007079) #8	BAIAP3 (ENSDLEG00000007093)	TSR3 (ENSDLEG00000007161) #9	GNPTG (ENSDLEG00000007174) #10	UNKL (ENSDLEG00000007219) #11	CUNH16orf91 (ENSDLEG00000007246) #12	PERCC1 (ENSDLEG00000007267) #13	CLCN7 (ENSDLEG00000007278) #15	PTX4 (ENSDLEG00000007294) #16	TELO2 (ENSDLEG00000007302) #17	IFT140 (ENSDLEG00000007323) #18	TMEM204 (ENSDLEG00000007342) #19	CRAMP1 (ENSDLEG00000007347) #20	JPT2 (ENSDLEG00000007393) #21	MAPK8IP3 (ENSDLEG00000007432) #22	NME3 (ENSDLEG00000007506) #23	MRPS34 (ENSDLEG00000007513) #24	SPSB3 (ENSDLEG00000007517) #26	ENSDLEG00000007525 #27	IGFALS (ENSDLEG00000007530) #28	HAGH (ENSDLEG00000007559) #29	FAHD1 (ENSDLEG00000007618) #30	MEIOB (ENSDLEG00000007627) #31	HS3ST6 (ENSDLEG00000007636) #32	MSRB1 (ENSDLEG00000007639) #33	RPL3L (ENSDLEG00000007645) #34	NDUFB10 (ENSDLEG00000007659) #35	RPS2 (ENSDLEG00000007664)	ENSDLEG00000007673	TBL3 (ENSDLEG00000007683) #37
Suina	ANCESTRAL SPECIES	28	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A.eb #18	ENSGT00390000015528 #19	ENSGT00940000153417.A.db #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Pig	MODERN SPECIES	11	BAIAP3 (ENSSSCG00000008029)	TSR3 (ENSSSCG00000008030) #9	ENSSSCG00000063096	GNPTG (ENSSSCG00000008031) #10	UNKL (ENSSSCG00000022963) #11	UQCC4 (ENSSSCG00000038882) #12	PERCC1 (ENSSSCG00000048138) #13	CCDC154 (ENSSSCG00000028139) #14	CLCN7 (ENSSSCG00000008024) #15	PTX4 (ENSSSCG00000037262) #16	TELO2 (ENSSSCG00000008022) #17	TMEM204 (ENSSSCG00000008021) #19	IFT140 (ENSSSCG00000008020) #18	CRAMP1 (ENSSSCG00000008026) #20	JPT2 (ENSSSCG00000008019) #21	MAPK8IP3 (ENSSSCG00000008018) #22	NME3 (ENSSSCG00000008017) #23	MRPS34 (ENSSSCG00000008016) #24	EME2 (ENSSSCG00000021467) #25	SPSB3 (ENSSSCG00000039024) #26	NUBP2 (ENSSSCG00000008014) #27	IGFALS (ENSSSCG00000008013) #28	FAHD1 (ENSSSCG00000039715) #30	ENSSSCG00000008012 #29	ENSSSCG00000025711 #31	HS3ST6 (ENSSSCG00000031216) #32	MSRB1 (ENSSSCG00000032932) #33	RPL3L (ENSSSCG00000032657) #34	NDUFB10 (ENSSSCG00000030328) #35	ENSSSCG00000033697	RNF151 (ENSSSCG00000034728)
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	848																ENSCWAG00000010875 #22	NME3 (ENSCWAG00000010828) #23	MRPS34 (ENSCWAG00000010813) #24	EME2 (ENSCWAG00000010752) #25	SPSB3 (ENSCWAG00000010677) #26	NUBP2 (ENSCWAG00000010505) #27	IGFALS (ENSCWAG00000010469) #28	HAGH (ENSCWAG00000010381) #29	FAHD1 (ENSCWAG00000010358) #30	ENSCWAG00000010137 #31	HS3ST6 (ENSCWAG00000010100) #32	MSRB1 (ENSCWAG00000010076) #33	RPL3L (ENSCWAG00000009981) #34	NDUFB10 (ENSCWAG00000009923) #35	ENSCWAG00000009812	RNF151 (ENSCWAG00000009774)
Chacoan peccary	MODERN SPECIES	847												TMEM204 (ENSCWAG00000021617) #19	ENSCWAG00000021584 #18	CRAMP1 (ENSCWAG00000021570) #20	JPT2 (ENSCWAG00000021561) #21	ENSCWAG00000021556 #22
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Carnivora	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Caniformia	ANCESTRAL SPECIES	8	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Ursidae	ANCESTRAL SPECIES	3	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.f #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Ursus	ANCESTRAL SPECIES	9	ENSGT01100000263714	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.f #35	ENSGT00940000153095.g.b.a.a.a.b.b	ENSGT00530000063647.A.a
American black bear	MODERN SPECIES	20	ENSUAMG00000013123	ENSUAMG00000013236 #8	UBE2I (ENSUAMG00000013240) #8	TSR3 (ENSUAMG00000013272) #9	GNPTG (ENSUAMG00000013274) #10	ENSUAMG00000013279 #11	UQCC4 (ENSUAMG00000013285) #12	CCDC154 (ENSUAMG00000013288) #14	CLCN7 (ENSUAMG00000013295) #15	PTX4 (ENSUAMG00000013300) #16	TELO2 (ENSUAMG00000013302) #17	IFT140 (ENSUAMG00000013306) #18	TMEM204 (ENSUAMG00000013309) #19	CRAMP1 (ENSUAMG00000013313) #20	JPT2 (ENSUAMG00000013315) #21	MAPK8IP3 (ENSUAMG00000013316) #22	NME3 (ENSUAMG00000013321) #23	MRPS34 (ENSUAMG00000013323) #24	EME2 (ENSUAMG00000013324) #25	SPSB3 (ENSUAMG00000013326) #26	NUBP2 (ENSUAMG00000013327) #27	IGFALS (ENSUAMG00000013329) #28	HAGH (ENSUAMG00000013330) #29	FAHD1 (ENSUAMG00000013331) #30
Polar bear	MODERN SPECIES	200	ENSUMAG00000021203	ENSUMAG00000021206	ENSUMAG00000021227	ENSUMAG00000021302 #8	ENSUMAG00000021305 #8	GNPTG (ENSUMAG00000021320) #10	ENSUMAG00000021347 #9	ENSUMAG00000021354 #12	CLCN7 (ENSUMAG00000021373) #15	PTX4 (ENSUMAG00000021453) #16	TELO2 (ENSUMAG00000021492) #17	IFT140 (ENSUMAG00000021605) #18	TMEM204 (ENSUMAG00000021614) #19	CRAMP1 (ENSUMAG00000021635) #20	JPT2 (ENSUMAG00000021688) #21	MAPK8IP3 (ENSUMAG00000021776) #22	SPSB3 (ENSUMAG00000022049) #26	NUBP2 (ENSUMAG00000022054) #27	HAGH (ENSUMAG00000022061) #29	FAHD1 (ENSUMAG00000022065) #30	ENSUMAG00000022070 #31	ENSUMAG00000022090 #33	RPL3L (ENSUMAG00000022104) #34	NDUFB10 (ENSUMAG00000022118) #35	RPS2 (ENSUMAG00000022123)	RNF151 (ENSUMAG00000022133)	TBL3 (ENSUMAG00000022149) #37	NOXO1 (ENSUMAG00000022239)	GFER (ENSUMAG00000022251)	ZNF598 (ENSUMAG00000022253)	ENSUMAG00000022255
Giant Panda	MODERN SPECIES	1	ENSAMEG00000007659	ENSAMEG00000031028	ENSAMEG00000007708	UBE2I (ENSAMEG00000007721) #8	BAIAP3 (ENSAMEG00000007748)	ENSAMEG00000007859 #9	ENSAMEG00000030878	ENSAMEG00000007981 #12	CCDC154 (ENSAMEG00000007986) #14	CLCN7 (ENSAMEG00000007997) #15	TELO2 (ENSAMEG00000008092) #17	ENSAMEG00000008206 #19	IFT140 (ENSAMEG00000008128) #18	CRAMP1 (ENSAMEG00000008213) #20	JPT2 (ENSAMEG00000008232) #21	MAPK8IP3 (ENSAMEG00000008238) #22	ENSAMEG00000024318 #23	MRPS34 (ENSAMEG00000031331) #24	EME2 (ENSAMEG00000008393) #25	SPSB3 (ENSAMEG00000008400) #26	NUBP2 (ENSAMEG00000008409) #27	IGFALS (ENSAMEG00000008445) #28	FAHD1 (ENSAMEG00000018730) #30	ENSAMEG00000008475 #31	ENSAMEG00000025433 #32	MSRB1 (ENSAMEG00000008487) #33	RPL3L (ENSAMEG00000008489) #34	NDUFB10 (ENSAMEG00000008522) #35	RPS2 (ENSAMEG00000007366)	RNF151 (ENSAMEG00000017653)	TBL3 (ENSAMEG00000017654) #37
Mustelinae	ANCESTRAL SPECIES	15	ENSGT00940000162207	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Ferret	MODERN SPECIES	189	ENSMPUG00000015766	ENSMPUG00000015765	UBE2I (ENSMPUG00000015763) #8	BAIAP3 (ENSMPUG00000015667)	TSR3 (ENSMPUG00000015659) #9	GNPTG (ENSMPUG00000015655) #10	UNKL (ENSMPUG00000015653) #11	UQCC4 (ENSMPUG00000015644) #12	CCDC154 (ENSMPUG00000015637) #14	CLCN7 (ENSMPUG00000015633) #15	TELO2 (ENSMPUG00000015631) #17	TMEM204 (ENSMPUG00000015628) #19	IFT140 (ENSMPUG00000015620) #18	ENSMPUG00000020062	CRAMP1 (ENSMPUG00000015618) #20	MAPK8IP3 (ENSMPUG00000015614) #22	MRPS34 (ENSMPUG00000015607) #24	EME2 (ENSMPUG00000015605) #25	SPSB3 (ENSMPUG00000015597) #26	NUBP2 (ENSMPUG00000015596) #27	IGFALS (ENSMPUG00000015594) #28	HAGH (ENSMPUG00000015572) #29	FAHD1 (ENSMPUG00000020061) #30	ENSMPUG00000015569 #31	HS3ST6 (ENSMPUG00000015567) #32	RPL3L (ENSMPUG00000015565) #34	NDUFB10 (ENSMPUG00000015557) #35	RPS2 (ENSMPUG00000015547)	RNF151 (ENSMPUG00000015546)	TBL3 (ENSMPUG00000015545) #37	NOXO1 (ENSMPUG00000015539)
American mink	MODERN SPECIES	111	ENSNVIG00000018382	UBE2I (ENSNVIG00000018606) #8	BAIAP3 (ENSNVIG00000018645)	TSR3 (ENSNVIG00000018868) #9	GNPTG (ENSNVIG00000018874) #10	UNKL (ENSNVIG00000018903) #11	UQCC4 (ENSNVIG00000018965) #12	CCDC154 (ENSNVIG00000018991) #14	CLCN7 (ENSNVIG00000019024) #15	PTX4 (ENSNVIG00000019142) #16	TELO2 (ENSNVIG00000019150) #17	IFT140 (ENSNVIG00000019190) #18	TM204 (ENSNVIG00000019228) #19	CRAMP1 (ENSNVIG00000019268) #20	JPT2 (ENSNVIG00000019338) #21	MAPK8IP3 (ENSNVIG00000019434) #22	ENSNVIG00000021975 #23	MRPS34 (ENSNVIG00000021989) #24	EME2 (ENSNVIG00000022005) #25	SPSB3 (ENSNVIG00000022024) #26	NUBP2 (ENSNVIG00000022036) #27	IGFALS (ENSNVIG00000022037) #28	ENSNVIG00000022054 #29	FAHD1 (ENSNVIG00000022077) #30	C9J0S1 (ENSNVIG00000022084) #31	HS3ST6 (ENSNVIG00000022091) #32	MSRB1 (ENSNVIG00000022096) #33	RPL3L (ENSNVIG00000022110) #34	ENSNVIG00000022130 #35	ENSNVIG00000022145	RNF151 (ENSNVIG00000022168)
Canidae	ANCESTRAL SPECIES	3	ENSGT00550000075088.a.a.db.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00940000153095.g.a.b	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00550000075088.a.a.db.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678.e #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.a.b	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Dingo	MODERN SPECIES	172	ENSCAFG00020001407	ENSCAFG00020001370 #8	BAIAP3 (ENSCAFG00020001352)	TSR3 (ENSCAFG00020001344) #9	GNPTG (ENSCAFG00020001337) #10	UNKL (ENSCAFG00020001284) #11	UQCC4 (ENSCAFG00020001278) #12	CCDC154 (ENSCAFG00020001227) #14	CLCN7 (ENSCAFG00020001216) #15	PTX4 (ENSCAFG00020001191) #16	TELO2 (ENSCAFG00020001179) #17	TMEM204 (ENSCAFG00020001166) #19	IFT140 (ENSCAFG00020001129) #18	CRAMP1 (ENSCAFG00020000788) #20	JPT2 (ENSCAFG00020000738) #21	MAPK8IP3 (ENSCAFG00020000709) #22	MRPS34 (ENSCAFG00020000675) #24	EME2 (ENSCAFG00020000621) #25	SPSB3 (ENSCAFG00020000616) #26	NUBP2 (ENSCAFG00020000610) #27	IGFALS (ENSCAFG00020000602) #28	HAGH (ENSCAFG00020000595) #29	FAHD1 (ENSCAFG00020000583) #30	ENSCAFG00020000382 #31	HS3ST6 (ENSCAFG00020000329) #32	MSRB1 (ENSCAFG00020000325) #33	RPL3L (ENSCAFG00020000233) #34	ENSCAFG00020000199 #35	ENSCAFG00020026327	RNF151 (ENSCAFG00020026323)	TBL3 (ENSCAFG00020026321) #37
Dog	MODERN SPECIES	34	ENSCAFG00845022862	ENSCAFG00845022755	ENSCAFG00845022697	UNKL (ENSCAFG00845022286) #11	C6H16orf91 (ENSCAFG00845022262) #12	ENSCAFG00845022174 #9	PERCC1 (ENSCAFG00845022143) #13	CCDC154 (ENSCAFG00845022050) #14	CLCN7 (ENSCAFG00845021512) #15	PTX4 (ENSCAFG00845021394) #16	TELO2 (ENSCAFG00845021282) #17	ENSCAFG00845021199 #19	IFT140 (ENSCAFG00845021074) #18	CRAMP1 (ENSCAFG00845020921) #20	JPT2 (ENSCAFG00845020882) #21	MAPK8IP3 (ENSCAFG00845019811) #22	MRPS34 (ENSCAFG00845019497) #24	ENSCAFG00845019435 #25	SPSB3 (ENSCAFG00845019224) #26	NUBP2 (ENSCAFG00845019149) #27	IGFALS (ENSCAFG00845019117) #28	FAHD1 (ENSCAFG00845019076) #30	HAGH (ENSCAFG00845018825) #29	ENSCAFG00845018651 #31	HS3ST6 (ENSCAFG00845018590) #32	MSRB1 (ENSCAFG00845018543) #33	RPL3L (ENSCAFG00845018359) #34	ENSCAFG00845018221	NDUFB10 (ENSCAFG00845018108) #35	RNF151 (ENSCAFG00845018062)	TBL3 (ENSCAFG00845017737) #37
Red fox	MODERN SPECIES	200	ENSVVUG00000011326	ENSVVUG00000011324	ENSVVUG00000011321	ENSVVUG00000011291 #8	BAIAP3 (ENSVVUG00000011214)	GNPTG (ENSVVUG00000011194) #10	UNKL (ENSVVUG00000011182) #11	TSR3 (ENSVVUG00000011174) #9	CCDC154 (ENSVVUG00000011157) #14	CLCN7 (ENSVVUG00000011067) #15	PTX4 (ENSVVUG00000011033) #16	TELO2 (ENSVVUG00000011008) #17	TMEM204 (ENSVVUG00000010997) #19	IFT140 (ENSVVUG00000010908) #18	JPT2 (ENSVVUG00000010820) #20	MAPK8IP3 (ENSVVUG00000010026) #22	MRPS34 (ENSVVUG00000010000) #24	SPSB3 (ENSVVUG00000009994) #26	NUBP2 (ENSVVUG00000009958) #27	IGFALS (ENSVVUG00000009953) #28	HAGH (ENSVVUG00000009937) #29	FAHD1 (ENSVVUG00000009934) #30	MEIOB (ENSVVUG00000009837) #31	HS3ST6 (ENSVVUG00000009829) #32	MSRB1 (ENSVVUG00000009825) #33	RPL3L (ENSVVUG00000009805) #34	NDUFB10 (ENSVVUG00000009798) #35	ENSVVUG00000009633	RNF151 (ENSVVUG00000009605)	TBL3 (ENSVVUG00000009589) #37	ENSVVUG00000009559
Felidae	ANCESTRAL SPECIES	25	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.m #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.a #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Cat	MODERN SPECIES	247	UBE2I (ENSFCAG00000027291) #8	TSR3 (ENSFCAG00000029607) #9	GNPTG (ENSFCAG00000010641) #10	ENSFCAG00000049219	UNKL (ENSFCAG00000010643) #11	UQCC4 (ENSFCAG00000040994) #12	PERCC1 (ENSFCAG00000043313) #13	CCDC154 (ENSFCAG00000010649) #14	CLCN7 (ENSFCAG00000010650) #15	PTX4 (ENSFCAG00000043223) #16	TELO2 (ENSFCAG00000010652) #17	TMEM204 (ENSFCAG00000033771) #19	IFT140 (ENSFCAG00000010653) #18	CRAMP1 (ENSFCAG00000011852) #20	JPT2 (ENSFCAG00000034589) #21	MAPK8IP3 (ENSFCAG00000011724) #22	NME3 (ENSFCAG00000046405) #23	MRPS34 (ENSFCAG00000022788) #24	EME2 (ENSFCAG00000011728) #25	SPSB3 (ENSFCAG00000011730) #26	NUBP2 (ENSFCAG00000024659) #27	IGFALS (ENSFCAG00000040872) #28	HAGH (ENSFCAG00000011731) #29	FAHD1 (ENSFCAG00000031483) #30	MEIOB (ENSFCAG00000011733) #31	HS3ST6 (ENSFCAG00000038639) #32	MSRB1 (ENSFCAG00000039302) #33	RPL3L (ENSFCAG00000011737) #34	NDUFB10 (ENSFCAG00000011738) #35	RPS2 (ENSFCAG00000029191)	RNF151 (ENSFCAG00000011739)
Panthera	ANCESTRAL SPECIES	29	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.m #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.a #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Panthera_a	ANCESTRAL SPECIES	31	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822.m #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348.a #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
lion	MODERN SPECIES	16	BAIAP3 (ENSPLOG00000016379)	TSR3 (ENSPLOG00000018457) #9	GNPTG (ENSPLOG00000018526) #10	ENSPLOG00000018640 #11	ENSPLOG00000018710 #11	UQCC4 (ENSPLOG00000011247) #12	PERCC1 (ENSPLOG00000011277) #13	CCDC154 (ENSPLOG00000011307) #14	CLCN7 (ENSPLOG00000011352) #15	PTX4 (ENSPLOG00000011504) #16	TELO2 (ENSPLOG00000011575) #17	IFT140 (ENSPLOG00000011769) #18	TMEM204 (ENSPLOG00000011810) #19	CRAMP1 (ENSPLOG00000011890) #20	JPT2 (ENSPLOG00000012622) #21	MAPK8IP3 (ENSPLOG00000012791) #22	NME3 (ENSPLOG00000013752) #23	MRPS34 (ENSPLOG00000013830) #24	EME2 (ENSPLOG00000013867) #25	SPSB3 (ENSPLOG00000013972) #26	NUBP2 (ENSPLOG00000014050) #27	IGFALS (ENSPLOG00000014256) #28	HAGH (ENSPLOG00000014311) #29	FAHD1 (ENSPLOG00000014422) #30	ENSPLOG00000014482 #31	HS3ST6 (ENSPLOG00000014723) #32	MSRB1 (ENSPLOG00000014740) #33	RPL3L (ENSPLOG00000014800) #34	NDUFB10 (ENSPLOG00000014912) #35	RPS2 (ENSPLOG00000015051)	RNF151 (ENSPLOG00000015190)
leopard	MODERN SPECIES	53	BAIAP3 (ENSPPRG00000010898)	TSR3 (ENSPPRG00000023265) #9	ENSPPRG00000022569	GNPTG (ENSPPRG00000022265) #10	UNKL (ENSPPRG00000018472) #11	UQCC4 (ENSPPRG00000013700) #12	PERCC1 (ENSPPRG00000013524) #13	CCDC154 (ENSPPRG00000013178) #14	CLCN7 (ENSPPRG00000012073) #15	PTX4 (ENSPPRG00000009473) #16	TELO2 (ENSPPRG00000006967) #17	IFT140 (ENSPPRG00000005374) #18	TMEM204 (ENSPPRG00000004432) #19	CRAMP1 (ENSPPRG00000003952) #20	JPT2 (ENSPPRG00000001951) #21	MAPK8IP3 (ENSPPRG00000001108) #22	ENSPPRG00000021662 #23	MRPS34 (ENSPPRG00000021470) #24	EME2 (ENSPPRG00000020258) #25	SPSB3 (ENSPPRG00000018726) #26	NUBP2 (ENSPPRG00000017030) #27	IGFALS (ENSPPRG00000013707) #28	HAGH (ENSPPRG00000012875) #29	FAHD1 (ENSPPRG00000012078) #30	ENSPPRG00000011909 #31	HS3ST6 (ENSPPRG00000010023) #32	ENSPPRG00000009865 #33	ENSPPRG00000006325 #33	RPL3L (ENSPPRG00000005785) #34	ENSPPRG00000004667 #35	RPS2 (ENSPPRG00000004155)
Tiger	MODERN SPECIES	590					ENSPTIG00000021566	ENSPTIG00000021646	UBE2I (ENSPTIG00000021666) #8	TSR3 (ENSPTIG00000000359) #9	UNKL (ENSPTIG00000000863) #11	CLCN7 (ENSPTIG00000005037) #15	PTX4 (ENSPTIG00000005448) #16	TELO2 (ENSPTIG00000005753) #17	IFT140 (ENSPTIG00000005835) #18	TMEM204 (ENSPTIG00000006591) #19	JPT2 (ENSPTIG00000007704) #21	MAPK8IP3 (ENSPTIG00000007779) #22	EME2 (ENSPTIG00000008505) #25	NUBP2 (ENSPTIG00000008814) #27	HAGH (ENSPTIG00000008853) #29	FAHD1 (ENSPTIG00000009011) #30	ENSPTIG00000009036 #31	HS3ST6 (ENSPTIG00000009671) #32	MSRB1 (ENSPTIG00000009446) #33	RPL3L (ENSPTIG00000009722) #34	NDUFB10 (ENSPTIG00000009910) #35	ENSPTIG00000010284	ENSPTIG00000010338	TBL3 (ENSPTIG00000010377) #37	ENSPTIG00000010738	GFER (ENSPTIG00000011023)	NHERF2 (ENSPTIG00000011167)
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Equus	ANCESTRAL SPECIES	32	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002827 #13	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a	ENSGT00940000157651 #37
Donkey	DUPLICATION
Donkey	DUPLICATION
Donkey	MODERN SPECIES	5	TSR3 (ENSEASG00005000250) #9	ENSEASG00005000258 #10	UNKL (ENSEASG00005000274) #11	ENSEASG00005034982 #12	PERCC1 (ENSEASG00005027506) #13	CCDC154 (ENSEASG00005000415) #14	CLCN7 (ENSEASG00005000520) #15	PTX4 (ENSEASG00005036837) #16	TELO2 (ENSEASG00005000596) #17	IFT140 (ENSEASG00005001221) #18	TMEM204 (ENSEASG00005001516) #19	CRAMP1 (ENSEASG00005001568) #20	JPT2 (ENSEASG00005025904) #21	ENSEASG00005038396 #22	ENSEASG00005034484 #22	ENSEASG00005001955 #22	NME3 (ENSEASG00005035536) #23	ENSEASG00005025961 #24	ENSEASG00005025437 #25	SPSB3 (ENSEASG00005026398) #26	NUBP2 (ENSEASG00005035230) #27	IGFALS (ENSEASG00005004586) #28	HAGH (ENSEASG00005004592) #29	FAHD1 (ENSEASG00005030060) #30	ENSEASG00005004600 #31	ENSEASG00005015561	HS3ST6 (ENSEASG00005004607) #32	RPL3L (ENSEASG00005009140) #34	ENSEASG00005033190	NDUFB10 (ENSEASG00005028164) #35	RPS2 (ENSEASG00005004630)
Donkey	MODERN SPECIES	5	UBE2I (ENSEASG00005000142) #8	ENSEASG00005000233	TSR3 (ENSEASG00005000250) #9	ENSEASG00005000258 #10	UNKL (ENSEASG00005000274) #11	ENSEASG00005034982 #12	PERCC1 (ENSEASG00005027506) #13	CCDC154 (ENSEASG00005000415) #14	CLCN7 (ENSEASG00005000520) #15	PTX4 (ENSEASG00005036837) #16	TELO2 (ENSEASG00005000596) #17	IFT140 (ENSEASG00005001221) #18	TMEM204 (ENSEASG00005001516) #19	CRAMP1 (ENSEASG00005001568) #20	JPT2 (ENSEASG00005025904) #21	ENSEASG00005038396 #22	ENSEASG00005034484 #22	ENSEASG00005001955 #22	NME3 (ENSEASG00005035536) #23	ENSEASG00005025961 #24	ENSEASG00005025437 #25	SPSB3 (ENSEASG00005026398) #26	NUBP2 (ENSEASG00005035230) #27	IGFALS (ENSEASG00005004586) #28	HAGH (ENSEASG00005004592) #29	FAHD1 (ENSEASG00005030060) #30	ENSEASG00005004600 #31	ENSEASG00005015561	HS3ST6 (ENSEASG00005004607) #32	RPL3L (ENSEASG00005009140) #34	ENSEASG00005033190
Donkey	MODERN SPECIES	5	ENSEASG00005000233	TSR3 (ENSEASG00005000250) #9	ENSEASG00005000258 #10	UNKL (ENSEASG00005000274) #11	ENSEASG00005034982 #12	PERCC1 (ENSEASG00005027506) #13	CCDC154 (ENSEASG00005000415) #14	CLCN7 (ENSEASG00005000520) #15	PTX4 (ENSEASG00005036837) #16	TELO2 (ENSEASG00005000596) #17	IFT140 (ENSEASG00005001221) #18	TMEM204 (ENSEASG00005001516) #19	CRAMP1 (ENSEASG00005001568) #20	JPT2 (ENSEASG00005025904) #21	ENSEASG00005038396 #22	ENSEASG00005034484 #22	ENSEASG00005001955 #22	NME3 (ENSEASG00005035536) #23	ENSEASG00005025961 #24	ENSEASG00005025437 #25	SPSB3 (ENSEASG00005026398) #26	NUBP2 (ENSEASG00005035230) #27	IGFALS (ENSEASG00005004586) #28	HAGH (ENSEASG00005004592) #29	FAHD1 (ENSEASG00005030060) #30	ENSEASG00005004600 #31	ENSEASG00005015561	HS3ST6 (ENSEASG00005004607) #32	RPL3L (ENSEASG00005009140) #34	ENSEASG00005033190	NDUFB10 (ENSEASG00005028164) #35
Horse	MODERN SPECIES	4	UBE2I (ENSECAG00000015831) #8	BAIAP3 (ENSECAG00000014225)	TSR3 (ENSECAG00000013501) #9	GNPTG (ENSECAG00000011390) #10	UNKL (ENSECAG00000010641) #11	ENSECAG00000054454 #12	PERCC1 (ENSECAG00000043201) #13	CCDC154 (ENSECAG00000009445) #14	CLCN7 (ENSECAG00000023236) #15	PTX4 (ENSECAG00000023063) #16	TELO2 (ENSECAG00000017413) #17	TMEM204 (ENSECAG00000015576) #19	IFT140 (ENSECAG00000009031) #18	CRAMP1 (ENSECAG00000023299) #20	JPT2 (ENSECAG00000026941) #21	MAPK8IP3 (ENSECAG00000016379) #22	NME3 (ENSECAG00000038477) #23	MRPS34 (ENSECAG00000016370) #24	EME2 (ENSECAG00000016045) #25	SPSB3 (ENSECAG00000013413) #26	NUBP2 (ENSECAG00000012545) #27	IGFALS (ENSECAG00000039211) #28	HAGH (ENSECAG00000005471) #29	FAHD1 (ENSECAG00000004353) #30	ENSECAG00000057961	MEIOB (ENSECAG00000001005) #31	HS3ST6 (ENSECAG00000000862) #32	RPL3L (ENSECAG00000020632) #34	NDUFB10 (ENSECAG00000020610) #35	RPS2 (ENSECAG00000009065)	RNF151 (ENSECAG00000008953)
Chiroptera	ANCESTRAL SPECIES	12	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Microchiroptera	ANCESTRAL SPECIES	17	ENSGT00940000158868.h	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a.b	ENSGT00530000063647.A.a
Greater horseshoe bat	MODERN SPECIES	47	ENSRFEG00010019105	UBE2I (ENSRFEG00010019169) #8	BAIAP3 (ENSRFEG00010019213)	TSR3 (ENSRFEG00010019277) #9	GNPTG (ENSRFEG00010019317) #10	UNKL (ENSRFEG00010019360) #11	UQCC4 (ENSRFEG00010019421) #12	CCDC154 (ENSRFEG00010019563) #14	CLCN7 (ENSRFEG00010019806) #15	PTX4 (ENSRFEG00010019992) #16	TELO2 (ENSRFEG00010020015) #17	IFT140 (ENSRFEG00010020088) #18	TMEM204 (ENSRFEG00010020163) #19	CRAMP1 (ENSRFEG00010020192) #20	JPT2 (ENSRFEG00010020239) #21	MAPK8IP3 (ENSRFEG00010020345) #22	MRPS34 (ENSRFEG00010020489) #24	EME2 (ENSRFEG00010020532) #25	SPSB3 (ENSRFEG00010020550) #26	NUBP2 (ENSRFEG00010020577) #27	IGFALS (ENSRFEG00010020626) #28	HAGH (ENSRFEG00010020660) #29	FAHD1 (ENSRFEG00010020709) #30	ENSRFEG00010020743 #31	HS3ST6 (ENSRFEG00010020816) #32	MSRB1 (ENSRFEG00010020839) #33	RPL3L (ENSRFEG00010020862) #34	NDUFB10 (ENSRFEG00010020889) #35	RPS2 (ENSRFEG00010020920)	RNF151 (ENSRFEG00010020958)	ENSRFEG00010020973
Microbat	MODERN SPECIES	1269								CCDC154 (ENSMLUG00000011607) #14	CLCN7 (ENSMLUG00000011575) #15	PTX4 (ENSMLUG00000011561) #16	TELO2 (ENSMLUG00000011527) #17	IFT140 (ENSMLUG00000009987) #18	TMEM204 (ENSMLUG00000010040) #19	CRAMP1 (ENSMLUG00000000709) #20	JPT2 (ENSMLUG00000000730) #21	MAPK8IP3 (ENSMLUG00000000736) #22	NME3 (ENSMLUG00000000754) #23	MRPS34 (ENSMLUG00000028772) #24	EME2 (ENSMLUG00000000758) #25	SPSB3 (ENSMLUG00000028814) #26	NUBP2 (ENSMLUG00000000768) #27	IGFALS (ENSMLUG00000000776) #28	HAGH (ENSMLUG00000000782) #29	FAHD1 (ENSMLUG00000000789) #30	ENSMLUG00000000791 #31	HS3ST6 (ENSMLUG00000011625) #32	MSRB1 (ENSMLUG00000011634) #33	RPL3L (ENSMLUG00000011638) #34	ENSMLUG00000011655 #35	ENSMLUG00000011660	RNF151 (ENSMLUG00000011679)
Megabat	MODERN SPECIES	3528		BAIAP3 (ENSPVAG00000016645)	TSR3 (ENSPVAG00000016647) #9	GNPTG (ENSPVAG00000016648) #10	ENSPVAG00000016649 #11	ENSPVAG00000016651 #12	CCDC154 (ENSPVAG00000016655) #14	CLCN7 (ENSPVAG00000016657) #15	PTX4 (ENSPVAG00000016660) #16	TELO2 (ENSPVAG00000016661) #17	IFT140 (ENSPVAG00000016662) #18	TMEM204 (ENSPVAG00000016663) #19	ENSPVAG00000016665	CRAMP1 (ENSPVAG00000016669) #20	JPT2 (ENSPVAG00000016673) #21	MAPK8IP3 (ENSPVAG00000016674) #22	NME3 (ENSPVAG00000016681) #23	MRPS34 (ENSPVAG00000016682) #24	EME2 (ENSPVAG00000016683) #25	SPSB3 (ENSPVAG00000016687) #26	NUBP2 (ENSPVAG00000016689) #27	HAGH (ENSPVAG00000016691) #29	ENSPVAG00000016695 #31	HS3ST6 (ENSPVAG00000016696) #32	ENSPVAG00000016697 #33	RPL3L (ENSPVAG00000016699) #34	NDUFB10 (ENSPVAG00000016701) #35	RPS2 (ENSPVAG00000016704)	RNF151 (ENSPVAG00000016706)	TBL3 (ENSPVAG00000016710) #37	NOXO1 (ENSPVAG00000016714)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a #22
Common shrew	MODERN SPECIES	2773																ENSSARG00000004604 #22
Atlantogenata	ANCESTRAL SPECIES	32	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a	ENSGT00530000063647.A.a
Afrotheria	ANCESTRAL SPECIES	30			ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a	ENSGT00530000063647.A.a
Afrotheria_a	ANCESTRAL SPECIES	29			ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.g.b.a.a	ENSGT00530000063647.A.a
Elephant	MODERN SPECIES	442	ENSLAFG00000031398	UBE2I (ENSLAFG00000018318) #8	BAIAP3 (ENSLAFG00000007230)	TSR3 (ENSLAFG00000026304) #9	GNPTG (ENSLAFG00000010446) #10	UNKL (ENSLAFG00000018262) #11	UQCC4 (ENSLAFG00000026451) #12	ENSLAFG00000004047 #14	CLCN7 (ENSLAFG00000003618) #15	PTX4 (ENSLAFG00000012669) #16	TELO2 (ENSLAFG00000003284) #17	TMEM204 (ENSLAFG00000017196) #19	ENSLAFG00000003286 #18	CRAMP1 (ENSLAFG00000020604) #20	JPT2 (ENSLAFG00000016324) #21	MAPK8IP3 (ENSLAFG00000028194) #22	MRPS34 (ENSLAFG00000022475) #24	ENSLAFG00000023334	SPSB3 (ENSLAFG00000028630) #26	HAGH (ENSLAFG00000032140) #29	FAHD1 (ENSLAFG00000008141) #30	ENSLAFG00000008142 #31	HS3ST6 (ENSLAFG00000001051) #32	ENSLAFG00000016584 #18	RPL3L (ENSLAFG00000016587) #34	NDUFB10 (ENSLAFG00000021643) #35	ENSLAFG00000004696	RNF151 (ENSLAFG00000030860)	TBL3 (ENSLAFG00000004699) #37	ENSLAFG00000004707	GFER (ENSLAFG00000028685)
Hyrax	MODERN SPECIES	2904																MAPK8IP3 (ENSPCAG00000006898) #22	NME3 (ENSPCAG00000007031) #23	MRPS34 (ENSPCAG00000007060) #24	ENSPCAG00000007088 #25	SPSB3 (ENSPCAG00000007138) #26	NUBP2 (ENSPCAG00000007200) #27	IGFALS (ENSPCAG00000007244) #28
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000158868	ENSGT00550000075088.a.a #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a	ENSGT00530000063647.A.a
Opossum	MODERN SPECIES	5	UBE2I (ENSMODG00000016199) #8	BAIAP3 (ENSMODG00000016195)	TSR3 (ENSMODG00000016193) #9	GNPTG (ENSMODG00000016192) #10	UNKL (ENSMODG00000016188) #11	ENSMODG00000016185 #12	ENSMODG00000016183 #14	CLCN7 (ENSMODG00000016179) #15	ENSMODG00000016175 #16	ENSMODG00000016174	TELO2 (ENSMODG00000016164) #17	IFT140 (ENSMODG00000016160) #18	TMEM204 (ENSMODG00000016163) #19	CRAMP1 (ENSMODG00000016154) #20	JPT2 (ENSMODG00000016153) #21	MAPK8IP3 (ENSMODG00000016149) #22	ENSMODG00000016134 #23	SPSB3 (ENSMODG00000016123) #26	NUBP2 (ENSMODG00000016119) #27	IGFALS (ENSMODG00000016108) #28	ENSMODG00000016115 #29	FAHD1 (ENSMODG00000016110) #30	ENSMODG00000016106 #31	HS3ST6 (ENSMODG00000016042) #32	RPL3L (ENSMODG00000016100) #34	NDUFB10 (ENSMODG00000016095) #35	ENSMODG00000016077	RNF151 (ENSMODG00000016093)	TBL3 (ENSMODG00000016091) #37	ENSMODG00000049873	ENSMODG00000016066
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00940000158868	ENSGT00550000075088.a.a.rb.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a	ENSGT00530000063647.A.a
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00940000158868	ENSGT00550000075088.a.a.rb.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a	ENSGT00530000063647.A.a
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00940000162162.b.a.a.b.a	ENSGT00550000075088.a.a.rb.b #8	ENSGT00730000110939.a	ENSGT00390000014665 #9	ENSGT00510000048359 #10	ENSGT00940000158822 #11	ENSGT00510000049652 #12	ENSGT00390000002278 #14	ENSGT00940000158458 #15	ENSGT01100000263515.a.a #16	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00390000001723 #31	ENSGT00940000154768.B #32	ENSGT00510000047678 #33	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095.h	ENSGT00940000153095.g.a.c	ENSGT00530000063647.A.a
Common wonbat	MODERN SPECIES	1009	ENSVURG00010011524	ENSVURG00010011474	UBE2I (ENSVURG00010011439) #8	BAIAP3 (ENSVURG00010011383)	TSR3 (ENSVURG00010011369) #9	GNPTG (ENSVURG00010011357) #10	UNKL (ENSVURG00010011333) #11	ENSVURG00010011316 #12	ENSVURG00010011295	CLCN7 (ENSVURG00010011261) #15	PTX4 (ENSVURG00010011243) #16	TELO2 (ENSVURG00010011232) #17	TMEM204 (ENSVURG00010011226) #19	IFT140 (ENSVURG00010011205) #18	CRAMP1 (ENSVURG00010011179) #20	MAPK8IP3 (ENSVURG00010011078) #22	NME3 (ENSVURG00010011044) #23	MRPS34 (ENSVURG00010011039) #24	SPSB3 (ENSVURG00010011033) #26	NUBP2 (ENSVURG00010011022) #27	IGFALS (ENSVURG00010011011) #28	FAHD1 (ENSVURG00010011002) #30	HAGH (ENSVURG00010010956) #29	ENSVURG00010010911 #31	ENSVURG00010010904 #32	MSRB1 (ENSVURG00010010897) #33	RPL3L (ENSVURG00010010888) #34	NDUFB10 (ENSVURG00010010878) #35	ENSVURG00010010866	RNF151 (ENSVURG00010010857)	TBL3 (ENSVURG00010010842) #37
koala	MODERN SPECIES	116	ENSPCIG00000015617	UBE2I (ENSPCIG00000015620) #8	BAIAP3 (ENSPCIG00000015622)	TSR3 (ENSPCIG00000015629) #9	GNPTG (ENSPCIG00000015631) #10	UNKL (ENSPCIG00000015633) #11	ENSPCIG00000015640 #12	ENSPCIG00000031234 #14	CLCN7 (ENSPCIG00000015643) #15	PTX4 (ENSPCIG00000017260) #16	TELO2 (ENSPCIG00000017263) #17	ENSPCIG00000017270 #18	TMEM204 (ENSPCIG00000017273) #19	CRAMP1 (ENSPCIG00000017274) #20	JPT2 (ENSPCIG00000017275) #21	MAPK8IP3 (ENSPCIG00000017276) #22	NME3 (ENSPCIG00000017277) #23	MRPS34 (ENSPCIG00000017278) #24	SPSB3 (ENSPCIG00000017279) #26	NUBP2 (ENSPCIG00000017280) #27	IGFALS (ENSPCIG00000017281) #28	HAGH (ENSPCIG00000017282) #29	FAHD1 (ENSPCIG00000017360) #30	ENSPCIG00000017363 #31	HS3ST6 (ENSPCIG00000017369) #32	MSRB1 (ENSPCIG00000030855) #33	RPL3L (ENSPCIG00000021801) #34	NDUFB10 (ENSPCIG00000021802) #35	ENSPCIG00000021804	RNF151 (ENSPCIG00000021808)	TBL3 (ENSPCIG00000021811) #37
Wallaby	MODERN SPECIES	4648																MAPK8IP3 (ENSMEUG00000012149) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000032100	ENSSHAG00000007034 #8	BAIAP3 (ENSSHAG00000007915)	TSR3 (ENSSHAG00000029432) #9	UNKL (ENSSHAG00000008411) #11	GNPTG (ENSSHAG00000008285) #10	PERCC1 (ENSSHAG00000009782) #13	ENSSHAG00000009800 #14	CLCN7 (ENSSHAG00000009987) #15	ENSSHAG00000023530	TELO2 (ENSSHAG00000010585) #17	IFT140 (ENSSHAG00000010791) #18	TMEM204 (ENSSHAG00000010939) #19	CRAMP1 (ENSSHAG00000012114) #20	JPT2 (ENSSHAG00000012700) #21	MAPK8IP3 (ENSSHAG00000012766) #22	NME3 (ENSSHAG00000023742) #23	MRPS34 (ENSSHAG00000022861) #24	SPSB3 (ENSSHAG00000013377) #26	NUBP2 (ENSSHAG00000013485) #27	IGFALS (ENSSHAG00000013535) #28	HAGH (ENSSHAG00000023063) #29	FAHD1 (ENSSHAG00000013683) #30	ENSSHAG00000013736 #31	HS3ST6 (ENSSHAG00000009243) #32	MSRB1 (ENSSHAG00000029584) #33	RPL3L (ENSSHAG00000021316) #34	NDUFB10 (ENSSHAG00000015191) #35	RPS2 (ENSSHAG00000015213)	RNF151 (ENSSHAG00000015257)	TBL3 (ENSSHAG00000015266) #37
Platypus	MODERN SPECIES	13	POLR3K (ENSOANG00000039734)	ENSOANG00000040472	PDPK1 (ENSOANG00000002330)	KCTD5 (ENSOANG00000040492)	UBE2I (ENSOANG00000038123) #8	BAIAP3 (ENSOANG00000020781)	ENSOANG00000013594 #9	ENSOANG00000048960	ENSOANG00000038628 #13	CLCN7 (ENSOANG00000002751) #15	TELO2 (ENSOANG00000001243) #17	IFT140 (ENSOANG00000001815) #18	TMEM204 (ENSOANG00000013655) #19	CRAMP1 (ENSOANG00000002915) #20	JPT2 (ENSOANG00000044642) #21	MAPK8IP3 (ENSOANG00000011871) #22	ENSOANG00000044345 #23	MRPS34 (ENSOANG00000050507) #24	SPSB3 (ENSOANG00000015654) #26	NUBP2 (ENSOANG00000046631) #27	IGFALS (ENSOANG00000028313) #28	HAGH (ENSOANG00000002919) #29	ENSOANG00000002921 #31	HS3ST6 (ENSOANG00000002922) #32	MSRB1 (ENSOANG00000001860) #33	RPL3L (ENSOANG00000001892) #34	RPS2 (ENSOANG00000039911)	ENSOANG00000040650 #35	TBL3 (ENSOANG00000009819) #37	ENSOANG00000050062	ENSOANG00000049373
Sauria	ANCESTRAL SPECIES	12	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT01010000222629	ENSGT00930000151045
Lepidosauria	ANCESTRAL SPECIES	77	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28
Episquamata	ANCESTRAL SPECIES	8	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT01030000234862	ENSGT00940000162720.a.a
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00940000162720.a.a	ENSGT00390000001488
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488	ENSGT00390000016730
Elapidae_a	ANCESTRAL SPECIES	21	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.l #22	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488	ENSGT00390000016730
Acanthophiinae	ANCESTRAL SPECIES	28	ENSGT00960000188184	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a.o	ENSGT00940000153882.a.b.b.a.p	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488	ENSGT00390000016730
Mainland tiger snake	MODERN SPECIES	176				TBC1D24 (ENSNSUG00000001147)	ATP6V0C (ENSNSUG00000001151)	AMDHD2 (ENSNSUG00000001153)	ENSNSUG00000001156	RNPS1 (ENSNSUG00000001161)	TELO2 (ENSNSUG00000001164) #17	IFT140 (ENSNSUG00000001169) #18	TMEM204 (ENSNSUG00000001170) #19	ENSNSUG00000001173 #18	CRAMP1 (ENSNSUG00000001174) #20	JPT2 (ENSNSUG00000001178) #21	ENSNSUG00000001180	MAPK8IP3 (ENSNSUG00000001197) #22	NME3 (ENSNSUG00000001215) #23	ERCC4 (ENSNSUG00000001217)	ENSNSUG00000001231	ENSNSUG00000001245	IGFALS (ENSNSUG00000001248) #28	NUBP2 (ENSNSUG00000001249) #27	SPSB3 (ENSNSUG00000001251) #26	EME2 (ENSNSUG00000001254) #25	MRPS34 (ENSNSUG00000001257) #24	SHISA9 (ENSNSUG00000001260)	ENSNSUG00000001262	SNX29 (ENSNSUG00000001265)	GSPT1 (ENSNSUG00000001336)	ENSNSUG00000003122	TMC5 (ENSNSUG00000003130)
Eastern brown snake	MODERN SPECIES	24	ENSPTXG00000004316	ENSPTXG00000004319	ENSPTXG00000004321	ENSPTXG00000004323	TBC1D24 (ENSPTXG00000004324)	ATP6V0C (ENSPTXG00000004325)	AMDHD2 (ENSPTXG00000004326)	ENSPTXG00000004328	RNPS1 (ENSPTXG00000004330)	TELO2 (ENSPTXG00000004333) #17	IFT140 (ENSPTXG00000004335) #18	TMEM204 (ENSPTXG00000004353) #19	CRAMP1 (ENSPTXG00000004356) #20	JPT2 (ENSPTXG00000004357) #21	ENSPTXG00000004358	ENSPTXG00000004362 #22	NME3 (ENSPTXG00000004421) #23	ERCC4 (ENSPTXG00000004424)	MRTFB (ENSPTXG00000004426)	IGFALS (ENSPTXG00000004428) #28	NUBP2 (ENSPTXG00000004430) #27	SPSB3 (ENSPTXG00000004433) #26	MRPS34 (ENSPTXG00000004435) #24	SHISA9 (ENSPTXG00000004438)	ENSPTXG00000004439	SNX29 (ENSPTXG00000004440)	GSPT1 (ENSPTXG00000004443)	RSL1D1 (ENSPTXG00000004445)	RRN3 (ENSPTXG00000004447)	NTAN1 (ENSPTXG00000004461)	ENSPTXG00000004463
Indian cobra	MODERN SPECIES	15	ENSNNAG00000010511	ENSNNAG00000010530	ENSNNAG00000010560	TBC1D24 (ENSNNAG00000010569)	ATP6V0C (ENSNNAG00000010675)	AMDHD2 (ENSNNAG00000010690)	ENSNNAG00000010703	ENSNNAG00000010733	RNPS1 (ENSNNAG00000010787)	TELO2 (ENSNNAG00000010841) #17	IFT140 (ENSNNAG00000010928) #18	TMEM204 (ENSNNAG00000011111) #19	CRAMP1 (ENSNNAG00000011152) #20	JPT2 (ENSNNAG00000011619) #21	ENSNNAG00000011647	MAPK8IP3 (ENSNNAG00000011680) #22	NME3 (ENSNNAG00000011850) #23	ENSNNAG00000011861	ERCC4 (ENSNNAG00000011878)	MRTFB (ENSNNAG00000012023)	IGFALS (ENSNNAG00000012067) #28	NUBP2 (ENSNNAG00000012080) #27	SPSB3 (ENSNNAG00000012100) #26	EME2 (ENSNNAG00000012123) #25	MRPS34 (ENSNNAG00000012152) #24	ENSNNAG00000012174	SHISA9 (ENSNNAG00000012209)	ENSNNAG00000012224	SNX29 (ENSNNAG00000012251)	GSPT1 (ENSNNAG00000012371)	RSL1D1 (ENSNNAG00000012403)
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.k.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.k.b #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.k.b #22
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	802																ENSPTXG00000016922 #22
Eastern brown snake	MODERN SPECIES	801																ENSPTXG00000016919 #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.l #22
Elapidae_a	ANCESTRAL SPECIES	21	ENSGT00960000188184	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.l #22	ENSGT00940000153496.a.a.k.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT00390000001488
Blue-lipped sea krait	MODERN SPECIES	3332													CRAMP1 (ENSLLTG00000007316) #20	JPT2 (ENSLLTG00000007294) #21	ENSLLTG00000007226	MAPK8IP3 (ENSLLTG00000007027) #22	NME3 (ENSLLTG00000006995) #23	ERCC4 (ENSLLTG00000006975)	MRTFB (ENSLLTG00000006882)	IGFALS (ENSLLTG00000006861) #28	NUBP2 (ENSLLTG00000006828) #27	SPSB3 (ENSLLTG00000006770) #26	EME2 (ENSLLTG00000006705) #25	MRPS34 (ENSLLTG00000006676) #24
Lizard	MODERN SPECIES	1255									ENSACAG00000004088	TELO2 (ENSACAG00000014677) #17	IFT140 (ENSACAG00000014726) #18	TMEM204 (ENSACAG00000014846) #19	ENSACAG00000039350 #18	CRAMP1 (ENSACAG00000003178) #20	JPT2 (ENSACAG00000003214) #21	MAPK8IP3 (ENSACAG00000003246) #22	NME3 (ENSACAG00000041297) #23	ENSACAG00000003574	ENSACAG00000003638	ENSACAG00000003699 #28
Laterata	ANCESTRAL SPECIES	23	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b.g	ENSGT00940000160824 #28	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.b #26	ENSGT00530000063937.b #25	ENSGT00390000008964 #24	ENSGT00940000161478	ENSGT00940000165640	ENSGT00730000110975	ENSGT00940000155582	ENSGT00440000038603	ENSGT01030000234862	ENSGT00940000162720.a.a
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000015006	ENSPMRG00000015010	NTN3 (ENSPMRG00000015014)	TBC1D24 (ENSPMRG00000015023)	ATP6V0C (ENSPMRG00000015036)	AMDHD2 (ENSPMRG00000015040)	ENSPMRG00000015048	ENSPMRG00000015055	RNPS1 (ENSPMRG00000015064)	TELO2 (ENSPMRG00000015079) #17	IFT140 (ENSPMRG00000015105) #18	TMEM204 (ENSPMRG00000015121) #19	CRAMP1 (ENSPMRG00000015163) #20	JPT2 (ENSPMRG00000015358) #21	ENSPMRG00000015373	MAPK8IP3 (ENSPMRG00000015527) #22	ENSPMRG00000016617	NME3 (ENSPMRG00000016619) #23	ERCC4 (ENSPMRG00000016623)	ENSPMRG00000016629	ENSPMRG00000016631	ENSPMRG00000016634	MRTFB (ENSPMRG00000016639)	IGFALS (ENSPMRG00000016645) #28	ENSPMRG00000016651 #27	SPSB3 (ENSPMRG00000016657) #26	EME2 (ENSPMRG00000016661) #25	ENSPMRG00000016664	MRPS34 (ENSPMRG00000016667) #24	ENSPMRG00000016670	SHISA9 (ENSPMRG00000016675)
Argentine black and white tegu	MODERN SPECIES	50	ENSSMRG00000016713	ENSSMRG00000016714	NTN3 (ENSSMRG00000016718)	TBC1D24 (ENSSMRG00000016720)	ATP6V0C (ENSSMRG00000016724)	AMDHD2 (ENSSMRG00000016727)	ENSSMRG00000016733	ENSSMRG00000016735	RNPS1 (ENSSMRG00000016741)	TELO2 (ENSSMRG00000016744) #17	IFT140 (ENSSMRG00000016747) #18	TMEM204 (ENSSMRG00000016754) #19	CRAMP1 (ENSSMRG00000016756) #20	JPT2 (ENSSMRG00000016763) #21	ENSSMRG00000016765	MAPK8IP3 (ENSSMRG00000016766) #22	GNPTG (ENSSMRG00000016775) #10	TSR3 (ENSSMRG00000016777) #9	UBE2I (ENSSMRG00000016779) #8	KCTD5 (ENSSMRG00000016781)	PDPK1 (ENSSMRG00000016783)	KDM8 (ENSSMRG00000016784)	NSMCE1 (ENSSMRG00000016785)	ENSSMRG00000016787	IL21R (ENSSMRG00000016788)	HS3ST4 (ENSSMRG00000016793)	HS3ST2 (ENSSMRG00000016795)	USP31 (ENSSMRG00000016799)	SCNN1G (ENSSMRG00000016803)	SCNN1B (ENSSMRG00000016804)	COG7 (ENSSMRG00000016808)
tuatara	MODERN SPECIES	1175	TBC1D24 (ENSSPUG00000016696)	ATP6V0C (ENSSPUG00000016692)	AMDHD2 (ENSSPUG00000016652)	ENSSPUG00000016639	ENSSPUG00000016626	ENSSPUG00000016611	ENSSPUG00000016600	RNPS1 (ENSSPUG00000016588)	ENSSPUG00000016573 #17	ENSSPUG00000016517 #17	TMEM204 (ENSSPUG00000016481) #19	IFT140 (ENSSPUG00000016458) #18	CRAMP1 (ENSSPUG00000016386) #20	JPT2 (ENSSPUG00000016353) #21	ENSSPUG00000016324	MAPK8IP3 (ENSSPUG00000014659) #22	NME3 (ENSSPUG00000014344) #23	MRPS34 (ENSSPUG00000014340) #24	EME2 (ENSSPUG00000014330) #25	SPSB3 (ENSSPUG00000014318) #26	NUBP2 (ENSSPUG00000014309) #27
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT01010000222629	ENSGT00930000151045
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00940000158575	ENSGT00390000017366	ENSGT00940000153246.a.a.a	ENSGT00940000160967	ENSGT00940000162846	ENSGT00510000048454
Emydidae	ANCESTRAL SPECIES	38	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00940000158575	ENSGT00390000017366	ENSGT00940000153246.a.a.a	ENSGT00940000160967	ENSGT00940000162846	ENSGT00510000048454
Three-toed box turtle	MODERN SPECIES	27	ENSTMTG00000002613	ENSTMTG00000002619	NTN3 (ENSTMTG00000002631)	TBC1D24 (ENSTMTG00000002655)	ATP6V0C (ENSTMTG00000002661)	AMDHD2 (ENSTMTG00000002663)	ENSTMTG00000002669	ENSTMTG00000002673	RNPS1 (ENSTMTG00000002680)	TELO2 (ENSTMTG00000002686) #17	IFT140 (ENSTMTG00000002716) #18	TMEM204 (ENSTMTG00000002748) #19	CRAMP1 (ENSTMTG00000002756) #20	JPT2 (ENSTMTG00000002778) #21	ENSTMTG00000002786	MAPK8IP3 (ENSTMTG00000002806) #22	SPSB3 (ENSTMTG00000002888) #26	NME3 (ENSTMTG00000002896) #23	MRPS34 (ENSTMTG00000002908) #24	NUBP2 (ENSTMTG00000002910) #27	IGFALS (ENSTMTG00000002917) #28	ANTKMT (ENSTMTG00000002922)	METRN (ENSTMTG00000002928)	FBXL16 (ENSTMTG00000002936)	CYP11A1 (ENSTMTG00000002950)	CCDC33 (ENSTMTG00000002982)	STRA6 (ENSTMTG00000003033)	ENSTMTG00000003144	ISLR2 (ENSTMTG00000003169)	PML (ENSTMTG00000003177)	STOML1 (ENSTMTG00000003203)
painted turtle	MODERN SPECIES	878	RGS11 (ENSCPBG00000005138)	FAM234A (ENSCPBG00000005124)	LUC7L (ENSCPBG00000005122)	ENSCPBG00000000632 #15	ENSCPBG00000000406	ENSCPBG00000000339	ENSCPBG00000000249	RNPS1 (ENSCPBG00000000214)	TELO2 (ENSCPBG00000000179) #17	TMEM204 (ENSCPBG00000000159) #19	ENSCPBG00000000145	IFT140 (ENSCPBG00000023388) #18	CRAMP1 (ENSCPBG00000023356) #20	JPT2 (ENSCPBG00000023354) #21	ENSCPBG00000023351	MAPK8IP3 (ENSCPBG00000023332) #22	NME3 (ENSCPBG00000023273) #23	MRPS34 (ENSCPBG00000023270) #24	SPSB3 (ENSCPBG00000023269) #26	NUBP2 (ENSCPBG00000023268) #27	IGFALS (ENSCPBG00000023267) #28
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00960000188184	ENSGT00390000011149	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00940000158575	ENSGT00390000017366	ENSGT00940000153246.a.a.a	ENSGT00940000160967	ENSGT00940000162846	ENSGT00510000048454	ENSGT01030000234614.C
Goode s thornscrub tortoise	MODERN SPECIES	150	ENSGEVG00005020573	NTN3 (ENSGEVG00005020542)	TBC1D24 (ENSGEVG00005020527)	ATP6V0C (ENSGEVG00005020520)	AMDHD2 (ENSGEVG00005020506)	ENSGEVG00005020500	ENSGEVG00005020496	ENSGEVG00005020489	RNPS1 (ENSGEVG00005020485)	TELO2 (ENSGEVG00005020464) #17	IFT140 (ENSGEVG00005020453) #18	TMEM204 (ENSGEVG00005020450) #19	ENSGEVG00005020445 #18	CRAMP1 (ENSGEVG00005020435) #20	JPT2 (ENSGEVG00005020431) #21	MAPK8IP3 (ENSGEVG00005020417) #22	NME3 (ENSGEVG00005020412) #23	MRPS34 (ENSGEVG00005020405) #24	SPSB3 (ENSGEVG00005020402) #26	NUBP2 (ENSGEVG00005020396) #27	IGFALS (ENSGEVG00005020390) #28	ANTKMT (ENSGEVG00005020386)	METRN (ENSGEVG00005020381)	FBXL16 (ENSGEVG00005020374)	CYP11A1 (ENSGEVG00005020330)	CCDC33 (ENSGEVG00005020305)	STRA6 (ENSGEVG00005020279)	ENSGEVG00005020269	ENSGEVG00005020263	PML (ENSGEVG00005020254)	STOML1 (ENSGEVG00005020246)
Abingdon island giant tortoise	MODERN SPECIES	809																MAPK8IP3 (ENSCABG00000016476) #22	NME3 (ENSCABG00000016475) #23	MRPS34 (ENSCABG00000016473) #24
Chinese turtle	MODERN SPECIES	1603										TELO2 (ENSPSIG00000007202) #17	IFT140 (ENSPSIG00000007362) #18	TMEM204 (ENSPSIG00000003226) #19	CRAMP1 (ENSPSIG00000003236) #20	JPT2 (ENSPSIG00000003315) #21	ENSPSIG00000003332	MAPK8IP3 (ENSPSIG00000003350) #22	NME3 (ENSPSIG00000003462) #23	MRPS34 (ENSPSIG00000003471) #24	EME2 (ENSPSIG00000003484) #25	SPSB3 (ENSPSIG00000003496) #26	NUBP2 (ENSPSIG00000003507) #27	IGFALS (ENSPSIG00000001836) #28	CCDC78 (ENSPSIG00000003517)	ANTKMT (ENSPSIG00000003522)	METRN (ENSPSIG00000003527)	ENSPSIG00000001839	FBXL16 (ENSPSIG00000003546)
Archosauria	ANCESTRAL SPECIES	8	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00940000160824 #28	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT00930000151045	ENSGT01010000222629
Aves	ANCESTRAL SPECIES	11	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b
Neognathae	ANCESTRAL SPECIES	10	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT00960000188470
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Great tit	MODERN SPECIES	5	ENSPMJG00000008261	ENSPMJG00000008260	ENSPMJG00000008254	ENSPMJG00000008237	ENSPMJG00000008236	NTN3 (ENSPMJG00000008235)	TBC1D24 (ENSPMJG00000008229)	ATP6V0C (ENSPMJG00000008221)	AMDHD2 (ENSPMJG00000008220)	ENSPMJG00000008219	RNPS1 (ENSPMJG00000008216)	TELO2 (ENSPMJG00000008213) #17	TMEM204 (ENSPMJG00000008210) #19	IFT140 (ENSPMJG00000008203) #18	CRAMP1 (ENSPMJG00000008175) #20	MAPK8IP3 (ENSPMJG00000008136) #22	MRPS34 (ENSPMJG00000008135) #24	GLYR1 (ENSPMJG00000008130)	ROGDI (ENSPMJG00000008129)
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00390000015528 #19	ENSGT00940000153417.A #18	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Flycatcher	MODERN SPECIES	5	ENSFALG00000028375	ENSFALG00000004787	ENSFALG00000025136	ENSFALG00000004795	ENSFALG00000004810	NTN3 (ENSFALG00000004832)	ENSFALG00000004844	AMDHD2 (ENSFALG00000004861)	ENSFALG00000004864	ENSFALG00000004868	ENSFALG00000004882 #17	TMEM204 (ENSFALG00000027604) #19	IFT140 (ENSFALG00000004934) #18	CRAMP1 (ENSFALG00000004993) #20	JPT2 (ENSFALG00000028396) #21	MAPK8IP3 (ENSFALG00000005043) #22	ENSFALG00000005108	ENSFALG00000005124
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164
Common canary	MODERN SPECIES	96									ENSSCAG00000002678	RNPS1 (ENSSCAG00000002683)	TELO2 (ENSSCAG00000002690) #17	IFT140 (ENSSCAG00000002717) #18	TMEM204 (ENSSCAG00000002765) #19	CRAMP1 (ENSSCAG00000002771) #20	JPT2 (ENSSCAG00000002787) #21	MAPK8IP3 (ENSSCAG00000002813) #22	MRPS34 (ENSSCAG00000002847) #24	GLYR1 (ENSSCAG00000002855)	ROGDI (ENSSCAG00000002865)	ENSSCAG00000002872
Zebra finch	MODERN SPECIES	5	ABCA3 (ENSTGUG00000003346)	ENSTGUG00000003328	CCNF (ENSTGUG00000003290)	ENSTGUG00000025542	ENSTGUG00000003287	ENSTGUG00000003275	NTN3 (ENSTGUG00000003265)	TBC1D24 (ENSTGUG00000003258)	ATP6V0C (ENSTGUG00000003256)	AMDHD2 (ENSTGUG00000003247)	RNPS1 (ENSTGUG00000003237)	TMEM204 (ENSTGUG00000003224) #17	IFT140 (ENSTGUG00000003195) #18	CRAMP1 (ENSTGUG00000003176) #20	JPT2 (ENSTGUG00000019130) #21	MAPK8IP3 (ENSTGUG00000003150) #22	MRPS34 (ENSTGUG00000003148) #24	GLYR1 (ENSTGUG00000003134)
Medium ground finch	MODERN SPECIES	86	ENSGFOG00000009381	ENSGFOG00000009372	ENSGFOG00000009347	ENSGFOG00000009342	ENSGFOG00000009338	TBC1D24 (ENSGFOG00000009326)	ATP6V0C (ENSGFOG00000009319)	AMDHD2 (ENSGFOG00000009304)	ENSGFOG00000009299	RNPS1 (ENSGFOG00000009288)	TELO2 (ENSGFOG00000009235) #17	TMEM204 (ENSGFOG00000014703) #19	IFT140 (ENSGFOG00000014700) #18	CRAMP1 (ENSGFOG00000014696) #20	JPT2 (ENSGFOG00000014694) #21	MAPK8IP3 (ENSGFOG00000014687) #22	MRPS34 (ENSGFOG00000014684) #24	ROGDI (ENSGFOG00000014682)
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT00960000188470	ENSGT01050000244841.A.b.a.b.b
Kakapo	MODERN SPECIES	21	ENSSHBG00005003019	ENSSHBG00005002999	ENSSHBG00005002981	ENSSHBG00005002966	ENSSHBG00005002948	TBC1D24 (ENSSHBG00005002922)	ATP6V0C (ENSSHBG00005002891)	AMDHD2 (ENSSHBG00005002855)	ENSSHBG00005002834	RNPS1 (ENSSHBG00005002789)	TELO2 (ENSSHBG00005002465) #17	TMEM204 (ENSSHBG00005002323) #19	IFT140 (ENSSHBG00005002216) #18	CRAMP1 (ENSSHBG00005001854) #20	JPT2 (ENSSHBG00005001530) #21	MAPK8IP3 (ENSSHBG00005001493) #22	MRPS34 (ENSSHBG00005001465) #24	GLYR1 (ENSSHBG00005000522)	ROGDI (ENSSHBG00005016437)	ENSSHBG00005016435	ENSSHBG00005016434	RAG1 (ENSSHBG00005016430)	ENSSHBG00005016423	ENSSHBG00005016420	LRRC4C (ENSSHBG00005016412)	ANO1 (ENSSHBG00005016323)	FGF3 (ENSSHBG00005016296)	FGF4 (ENSSHBG00005016290)	FGF19 (ENSSHBG00005016282)	LTO1 (ENSSHBG00005016276)	CCND1 (ENSSHBG00005016264)
Golden eagle	MODERN SPECIES	17	ENSACCG00020012557	ENSACCG00020012582	NTN3 (ENSACCG00020012598)	TBC1D24 (ENSACCG00020012625)	ATP6V0C (ENSACCG00020012647)	AMDHD2 (ENSACCG00020012667)	ENSACCG00020012693	ENSACCG00020012723	RNPS1 (ENSACCG00020012750)	TELO2 (ENSACCG00020012870) #17	IFT140 (ENSACCG00020012976) #18	TMEM204 (ENSACCG00020013019) #19	CRAMP1 (ENSACCG00020013142) #20	JPT2 (ENSACCG00020013182) #21	ENSACCG00020013199	MAPK8IP3 (ENSACCG00020013368) #22	MRPS34 (ENSACCG00020013505) #24	GLYR1 (ENSACCG00020013541)	ROGDI (ENSACCG00020013589)	ENSACCG00020013617	ENSACCG00020013633
Galloanserae	ANCESTRAL SPECIES	80																ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00390000006698 #17	ENSGT00390000017704	ENSGT00730000111029	ENSGT00530000066748	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00390000011149	ENSGT00960000188184	ENSGT00810000125541	ENSGT00940000158111	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b	ENSGT00940000157930.f.b.a	ENSGT00940000161148	ENSGT00940000160939	ENSGT00940000159473	ENSGT00950000182961.b	ENSGT00390000007907	ENSGT01070000257283	ENSGT00500000044955	ENSGT00390000011343	ENSGT00390000002365.o	ENSGT00940000157930.f.a
Japanese quail	MODERN SPECIES	5	TMEM204 (ENSCJPG00005018338) #19	TELO2 (ENSCJPG00005018346) #17	ENSCJPG00005018447	RNPS1 (ENSCJPG00005018448)	ENSCJPG00005018449	AMDHD2 (ENSCJPG00005018450)	ATP6V0C (ENSCJPG00005018451)	TBC1D24 (ENSCJPG00005018452)	NTN3 (ENSCJPG00005018454)	ENSCJPG00005018455	ENSCJPG00005018456	ENSCJPG00005018457	ENSCJPG00005018458	CCNF (ENSCJPG00005018459)	ENSCJPG00005018460	MAPK8IP3 (ENSCJPG00005018461) #22	MRPS34 (ENSCJPG00005018493) #24	GLYR1 (ENSCJPG00005018494)	ROGDI (ENSCJPG00005018495)	ENSCJPG00005018496	ENSCJPG00005018497	ACSM5 (ENSCJPG00005018499)	PDILT (ENSCJPG00005018501)	GPR139 (ENSCJPG00005018502)	GPRC5B (ENSCJPG00005018503)	ENSCJPG00005018505	VPS35L (ENSCJPG00005018507)	THUMPD1 (ENSCJPG00005018770)	ACSM3 (ENSCJPG00005018771)	ENSCJPG00005018772	ENSCJPG00005018773
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00940000153417.A #18	ENSGT00390000006698 #17	ENSGT00730000111029	ENSGT00530000066748	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00390000011149	ENSGT00960000188184	ENSGT00810000125541	ENSGT00940000158111	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b	ENSGT00940000157930.f.b.a	ENSGT00940000161148	ENSGT00940000160939	ENSGT00940000159473	ENSGT00950000182961.b	ENSGT00390000007907	ENSGT01070000257283	ENSGT00500000044955	ENSGT00390000011343	ENSGT00390000002365.o	ENSGT00940000157930.f.a
Turkey	DUPLICATION
Turkey	MODERN SPECIES	7	TBC1D24 (ENSMGAG00000009991)	ATP6V0C (ENSMGAG00000019830)	AMDHD2 (ENSMGAG00000010012)	ENSMGAG00000010019	ENSMGAG00000010029	ENSMGAG00000010042	ENSMGAG00000017654	TELO2 (ENSMGAG00000010047) #17	IFT140 (ENSMGAG00000010061) #18	TMEM204 (ENSMGAG00000010086) #19	CRAMP1 (ENSMGAG00000010243) #20	JPT2 (ENSMGAG00000010245) #21	ENSMGAG00000009945	ENSMGAG00000010151	ENSMGAG00000022690 #22	ENSMGAG00000010156 #22	ENSMGAG00000010241 #24	ENSMGAG00000010221	ENSMGAG00000010244	ENSMGAG00000010252	ENSMGAG00000016838	ACSM5 (ENSMGAG00000010256)	ENSMGAG00000022371	ENSMGAG00000021402	ENSMGAG00000021101	GPR139 (ENSMGAG00000015619)	ACSM3 (ENSMGAG00000010342)	ENSMGAG00000020747	ENSMGAG00000010365	REXO5 (ENSMGAG00000010369)	DCUN1D3 (ENSMGAG00000010392)
Turkey	MODERN SPECIES	7	NTN3 (ENSMGAG00000009973)	TBC1D24 (ENSMGAG00000009991)	ATP6V0C (ENSMGAG00000019830)	AMDHD2 (ENSMGAG00000010012)	ENSMGAG00000010019	ENSMGAG00000010029	ENSMGAG00000010042	ENSMGAG00000017654	TELO2 (ENSMGAG00000010047) #17	IFT140 (ENSMGAG00000010061) #18	TMEM204 (ENSMGAG00000010086) #19	CRAMP1 (ENSMGAG00000010243) #20	JPT2 (ENSMGAG00000010245) #21	ENSMGAG00000009945	ENSMGAG00000010151	ENSMGAG00000022690 #22	ENSMGAG00000010156 #22	ENSMGAG00000010241 #24	ENSMGAG00000010221	ENSMGAG00000010244	ENSMGAG00000010252	ENSMGAG00000016838	ACSM5 (ENSMGAG00000010256)	ENSMGAG00000022371	ENSMGAG00000021402	ENSMGAG00000021101	GPR139 (ENSMGAG00000015619)	ACSM3 (ENSMGAG00000010342)	ENSMGAG00000020747	ENSMGAG00000010365	REXO5 (ENSMGAG00000010369)
Chicken	MODERN SPECIES	5	NTN3 (ENSGALG00010017519)	ENSGALG00010017523	NOG2 (ENSGALG00010019318)	ENSGALG00010017565	ENSGALG00010017585	ENSGALG00010017590	CCNF (ENSGALG00010017595)	ENSGALG00010017601	ENSGALG00010017607	ENSGALG00010017611	ENSGALG00010017614	ENSGALG00010017617	ENSGALG00010017623	ENSGALG00010017630	ENSGALG00010017637	MAPK8IP3 (ENSGALG00010016474) #22	MRPS34 (ENSGALG00010016527) #24	GLYR1 (ENSGALG00010019586)	ROGDI (ENSGALG00010016559)	MCHR2 (ENSGALG00010016380)	ENSGALG00010016390	ACSM5 (ENSGALG00010016399)	PDILT (ENSGALG00010016406)	GPR139 (ENSGALG00010016434)	GPRC5B (ENSGALG00010017641)	ENSGALG00010017649	ENSGALG00010017653	ENSGALG00010017655	VPS35L (ENSGALG00010017700)	THUMPD1 (ENSGALG00010017957)	ACSM3 (ENSGALG00010017967)
Anatidae	ANCESTRAL SPECIES	7	ENSGT00940000155366.a	ENSGT00390000001653	ENSGT00940000161164	ENSGT00390000013826	ENSGT00390000013271	ENSGT00940000166211	ENSGT00390000004428.b	ENSGT00950000183193.A.c.a ##27	ENSGT00950000182894.A.b.a	ENSGT00950000182696.A.b	ENSGT00940000156222.b	ENSGT01040000240668	ENSGT00390000002886.b.a	ENSGT00940000156053	ENSGT00940000155366.b.b	ENSGT00940000153496.a.a #22	ENSGT00390000008964 #24	ENSGT00940000156435	ENSGT00390000007164	ENSGT01050000244841.A.b.a.b.b	ENSGT00940000160685	ENSGT00390000011615.B	ENSGT00510000048539	ENSGT00550000074885	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00390000007652 #21	ENSGT00390000003337 #20	ENSGT00390000015528 #19	ENSGT00940000153417.A #18
Pink-footed goose	MODERN SPECIES	119												GRIN2A (ENSABRG00000007877)	ENSABRG00000007837	HAPSTR1 (ENSABRG00000007822)	USP7 (ENSABRG00000007793)	MAPK8IP3 (ENSABRG00000000441) #22	MRPS34 (ENSABRG00000000111) #24	GLYR1 (ENSABRG00000000094)	ROGDI (ENSABRG00000000090)	ENSABRG00000021307	ENSABRG00000021306	RBFOX1 (ENSABRG00000021282)	ENSABRG00000021273
Duck	MODERN SPECIES	6	ENSAPLG00000018580	CLEC16A (ENSAPLG00000002585)	DEXI (ENSAPLG00000002608)	ENSAPLG00000028876	TVP23A (ENSAPLG00000003074)	NUBP1 (ENSAPLG00000003389) ##27	TEKT5 (ENSAPLG00000003701)	ENSAPLG00000017858	EMP2 (ENSAPLG00000003965)	GRIN2A (ENSAPLG00000004053)	ENSAPLG00000028640	ENSAPLG00000015623	HAPSTR1 (ENSAPLG00000015595)	ENSAPLG00000025761	USP7 (ENSAPLG00000015128)	MAPK8IP3 (ENSAPLG00000014189) #22	MRPS34 (ENSAPLG00000017503) #24	GLYR1 (ENSAPLG00000013726)	ROGDI (ENSAPLG00000013380)	ENSAPLG00000013376	ENSAPLG00000019242	ENSAPLG00000026197	RBFOX1 (ENSAPLG00000013263)	ENSAPLG00000030838	ENSAPLG00000024865	TMEM114 (ENSAPLG00000013247)	ABAT (ENSAPLG00000012308)	TMEM186 (ENSAPLG00000011977)	PMM2 (ENSAPLG00000012003)	CARHSP1 (ENSAPLG00000026317)	JPT2 (ENSAPLG00000011858) #21
African ostrich	MODERN SPECIES	516	ENSSCUG00000006575	ENSSCUG00000006576	TBC1D24 (ENSSCUG00000006580)	ATP6V0C (ENSSCUG00000006586)	AMDHD2 (ENSSCUG00000006589)	ENSSCUG00000006592	ENSSCUG00000006608	RNPS1 (ENSSCUG00000006615)	TELO2 (ENSSCUG00000006622) #17	IFT140 (ENSSCUG00000006631) #18	TMEM204 (ENSSCUG00000006638) #19	CRAMP1 (ENSSCUG00000006643) #20	JPT2 (ENSSCUG00000006649) #21	ENSSCUG00000006651	ENSSCUG00000006652	MAPK8IP3 (ENSSCUG00000006682) #22	GLYR1 (ENSSCUG00000006761)	ROGDI (ENSSCUG00000006773)	ENSSCUG00000006774
Australian saltwater crocodile	MODERN SPECIES	42	NTN3 (ENSCPRG00005000848)	TBC1D24 (ENSCPRG00005000819)	ATP6V0C (ENSCPRG00005000800)	AMDHD2 (ENSCPRG00005000778)	ENSCPRG00005000774	ENSCPRG00005000767	ENSCPRG00005000750	RNPS1 (ENSCPRG00005000740)	ENSCPRG00005000734	TELO2 (ENSCPRG00005000645) #17	TMEM204 (ENSCPRG00005000627) #19	IFT140 (ENSCPRG00005000596) #18	CRAMP1 (ENSCPRG00005000537) #20	JPT2 (ENSCPRG00005000524) #21	ENSCPRG00005000516	MAPK8IP3 (ENSCPRG00005000441) #22	NME3 (ENSCPRG00005000423) #23	MRPS34 (ENSCPRG00005000417) #24	EME2 (ENSCPRG00005000409) #25	SPSB3 (ENSCPRG00005000400) #26	NUBP2 (ENSCPRG00005000391) #27	IGFALS (ENSCPRG00005000385) #28	CCDC78 (ENSCPRG00005000374)	ANTKMT (ENSCPRG00005000349)	METRN (ENSCPRG00005000318)	ENSCPRG00005000302	WDR24 (ENSCPRG00005000295)	JMJD8 (ENSCPRG00005000254)	STUB1 (ENSCPRG00005000243)	ENSCPRG00005000232	RHOT2 (ENSCPRG00005000198)
Anura	ANCESTRAL SPECIES	138	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698 #17	ENSGT00940000153417.A #18	ENSGT00390000015528 #19	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27
Frog	MODERN SPECIES	9	c8orf33 (ENSXETG00000024441)	amdhd2 (ENSXETG00000020279)	tbc1d24.1 (ENSXETG00000020284)	ntn3 (ENSXETG00000020288)	ENSXETG00000048065	nog2 (ENSXETG00000020301)	ankfn1l (ENSXETG00000020302)	ENSXETG00000046637	tedc2 (ENSXETG00000032467)	ENSXETG00000044134	ENSXETG00000033514	ENSXETG00000037929	ENSXETG00000039949	ccnf (ENSXETG00000012459)	XB5829846 [provisional:mfsd1] (ENSXETG00000012456)	mapk8ip3 (ENSXETG00000034183) #22	rab40c (ENSXETG00000042241)	ubfd1 (ENSXETG00000031242)	ears2 (ENSXETG00000012433)	cog7 (ENSXETG00000012431)	scnn1b (ENSXETG00000027567)	scnn1g (ENSXETG00000012423)	usp31 (ENSXETG00000012419)	hs3st2 (ENSXETG00000049108)	ENSXETG00000047187	ENSXETG00000040015	gcnt7 (ENSXETG00000004372)	ENSXETG00000049189	ENSXETG00000037485	ENSXETG00000031754	ENSXETG00000004380
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000029861	RNPS1 (ENSLLEG00000029820)	ENSLLEG00000029800	TELO2 (ENSLLEG00000029748) #17	TMEM204 (ENSLLEG00000029727) #19	IFT140 (ENSLLEG00000029565) #18	CRAMP1 (ENSLLEG00000029510) #20	JPT2 (ENSLLEG00000029452) #21	ENSLLEG00000029330	ENSLLEG00000029277	ENSLLEG00000029146	ENSLLEG00000029014	ENSLLEG00000028930	ENSLLEG00000028893	ENSLLEG00000028848	MAPK8IP3 (ENSLLEG00000028772) #22	ENSLLEG00000028752	ENSLLEG00000028738	NME3 (ENSLLEG00000028485) #23	MRPS34 (ENSLLEG00000028429) #24	EME2 (ENSLLEG00000028385) #25	SPSB3 (ENSLLEG00000028340) #26	NUBP2 (ENSLLEG00000028212) #27	ENSLLEG00000028180	ENSLLEG00000028144	ENSLLEG00000028128	ENSLLEG00000028105	NAA60 (ENSLLEG00000028078)	INTS15 (ENSLLEG00000028034)	ENSLLEG00000028001	ENSLLEG00000027947
Coelacanth	MODERN SPECIES	635								ENSLACG00000002113	ENSLACG00000002471	CRAMP1 (ENSLACG00000003318) #20	ENSLACG00000005881 #21	ENSLACG00000007743	TEKT4 (ENSLACG00000008090)	ENSLACG00000010954	ENSLACG00000011235	MAPK8IP3 (ENSLACG00000011576) #22	NME3 (ENSLACG00000013034) #23	MRPS34 (ENSLACG00000013170) #24	EME2 (ENSLACG00000013390) #25	SPSB3 (ENSLACG00000013551) #26	NUBP2 (ENSLACG00000013716) #27	IGFALS (ENSLACG00000013872) #28	ENSLACG00000014290	ANTKMT (ENSLACG00000014511)	METRN (ENSLACG00000014741)	FBXL16 (ENSLACG00000015299)	WDR24 (ENSLACG00000015889)	ENSLACG00000015997
Actinopterygii	ANCESTRAL SPECIES	398													ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27
Neopterygii	ANCESTRAL SPECIES	170	ENSGT00940000165566	ENSGT00390000017379	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27
Osteoglossocephalai	ANCESTRAL SPECIES	154								ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153470.a.b.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00940000158312.e	ENSGT00940000153820.b.b	ENSGT00950000182933.B.a.a	ENSGT00930000151045.e	ENSGT00990000204060
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	466															ENSGT00940000160875.j	ENSGT00940000153496.a.a.o #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT00390000012605	ENSGT00940000158312.f	ENSGT00390000015438
P. kingsleyae	MODERN SPECIES	58	emc10 (ENSPKIG00000021320)	zgc:195001 (ENSPKIG00000021356)	ENSPKIG00000021374	tbc1d17 (ENSPKIG00000021386)	nucb1 (ENSPKIG00000021431)	ccndx (ENSPKIG00000021467)	PPFIA3 (ENSPKIG00000021520)	ENSPKIG00000021620	ENSPKIG00000021645	ENSPKIG00000021662	hsd17b14 (ENSPKIG00000021694)	bcat2 (ENSPKIG00000021768)	baxa (ENSPKIG00000021806)	MAP2K3 (ENSPKIG00000021907)	tmem11 (ENSPKIG00000021987)	mapk8ip3 (ENSPKIG00000022083) #22	ENSPKIG00000022289	nme3 (ENSPKIG00000022312) #23	mrps34 (ENSPKIG00000022331) #24	atp6v0ca (ENSPKIG00000022347)	amdhd2 (ENSPKIG00000022364)	JMJD8 (ENSPKIG00000022394)	antkmt (ENSPKIG00000022501)	IFT140 (ENSPKIG00000022432) #18	xpo6 (ENSPKIG00000022550)	ENSPKIG00000022631	litaf (ENSPKIG00000022648)	snn (ENSPKIG00000022664)	zc3h7a (ENSPKIG00000022694)	pla2g10 (ENSPKIG00000022770)	parn (ENSPKIG00000022807)
Asian bonytongue	MODERN SPECIES	23	ENSSFOG00015008664	hspbp1 (ENSSFOG00015008614)	tmem86b (ENSSFOG00015008581)	aspdh (ENSSFOG00015008539)	gys1 (ENSSFOG00015008475)	pold1 (ENSSFOG00015008405)	zgc:55558 (ENSSFOG00015008376)	SLC17A7 (ENSSFOG00015008330)	ENSSFOG00015008308	ENSSFOG00015008283	eps8l1a (ENSSFOG00015008258)	dcun1d3 (ENSSFOG00015008246)	ENSSFOG00015025480	ENSSFOG00015008171	MAP2K3 (ENSSFOG00015008110)	mapk8ip3 (ENSSFOG00015008039) #22	nme3 (ENSSFOG00015007974) #23	mrps34 (ENSSFOG00015027593) #24	ATP6V0C (ENSSFOG00015031277)	zgc:100868 (ENSSFOG00015007389)	zgc:100868 (ENSSFOG00015006793)	fus (ENSSFOG00015030804)	vkorc1 (ENSSFOG00015024706)	mapk7 (ENSSFOG00015006670)	kat8 (ENSSFOG00015006636)	rnf25 (ENSSFOG00015026146)	ENSSFOG00015006414	thoc6 (ENSSFOG00015006385)	srrm2 (ENSSFOG00015027130)	ENSSFOG00015006326	ENSSFOG00015006309
Osteoglossiformes	ANCESTRAL SPECIES	87	ENSGT00530000063694.a.h	ENSGT00940000164148.a.b	ENSGT00390000004566.c	ENSGT00940000154944.bb	ENSGT00390000006695	ENSGT00940000154959	ENSGT00940000155286	ENSGT01030000234586.A.a.b	ENSGT00940000160875.i	ENSGT00390000014840.a	ENSGT00390000006617.a	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000165198	ENSGT00940000153496.a.a.p #22	ENSGT00530000063937.b #25	ENSGT01030000234629.E.a.b #26	ENSGT00950000183193.A.c.b #27	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153470.a.b.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b	ENSGT00940000163984.B	ENSGT00940000158312.e	ENSGT00940000153820.b.b	ENSGT00950000182933.B.a.a	ENSGT00930000151045.e	ENSGT00990000204060	ENSGT01100000263515.a.b.a.b.a.h ##16
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015016936	cox6b1 (ENSSFOG00015016958)	KATNIP (ENSSFOG00015030287)	DCUN1D3 (ENSSFOG00015029071)	lyrm1 (ENSSFOG00015028653)	DNAH3 (ENSSFOG00015017037)	MPRIP (ENSSFOG00015017185)	KCNJ18 (ENSSFOG00015017347)	MAP2K3 (ENSSFOG00015017361)	natd1 (ENSSFOG00015017400)	tmem11 (ENSSFOG00015031133)	dhrs7b (ENSSFOG00015017425)	CRAMP1 (ENSSFOG00015017473) #20	jpt2 (ENSSFOG00015017678) #21	ENSSFOG00015017686	mapk8ip3 (ENSSFOG00015017726) #22	spsb3a (ENSSFOG00015026406) #26	nubp2 (ENSSFOG00015017820) #27	atp6v0ca (ENSSFOG00015025963)	TBC1D24 (ENSSFOG00015017859)	ENSSFOG00015017874	ntn2 (ENSSFOG00015017974)	nog2 (ENSSFOG00015018190)	ENSSFOG00015018202	CAPN15 (ENSSFOG00015018233)	MSS51 (ENSSFOG00015018291)	ENSSFOG00015018324	ENSSFOG00015018333	STUB1 (ENSSFOG00015032771)	ENSSFOG00015018358	crp2 (ENSSFOG00015018373) ##16
P. kingsleyae	MODERN SPECIES	170	cox6b1 (ENSPKIG00000009630)	ENSPKIG00000009614	ENSPKIG00000009584	DCUN1D3 (ENSPKIG00000009560)	lyrm1 (ENSPKIG00000009541)	DNAH3 (ENSPKIG00000009442)	MPRIP (ENSPKIG00000009138)	KCNJ18 (ENSPKIG00000008945)	MAP2K3 (ENSPKIG00000008897)	natd1 (ENSPKIG00000008830)	tmem11 (ENSPKIG00000008790)	dhrs7b (ENSPKIG00000008762)	CRAMP1 (ENSPKIG00000008706) #20	jpt2 (ENSPKIG00000008686) #21	ENSPKIG00000008645	mapk8ip3 (ENSPKIG00000008596) #22	EME2 (ENSPKIG00000008539) #25	spsb3a (ENSPKIG00000008502) #26	nubp2 (ENSPKIG00000008473) #27	ATP6V0C (ENSPKIG00000008460)	TBC1D24 (ENSPKIG00000008441)	ENSPKIG00000008390	ntn2 (ENSPKIG00000008341)	nog2 (ENSPKIG00000008324)	ENSPKIG00000008143	CAPN15 (ENSPKIG00000008024)	MSS51 (ENSPKIG00000007982)	ENSPKIG00000007954	STUB1 (ENSPKIG00000007913)	crp2 (ENSPKIG00000007863) ##16	ENSPKIG00000007838
Clupeocephala	ANCESTRAL SPECIES	327											ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00390000012605	ENSGT00940000158312.f	ENSGT00390000015438	ENSGT00390000014771.b.a	ENSGT00390000002810	ENSGT00940000160286
Euteleosteomorpha	ANCESTRAL SPECIES	320											ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a
Acanthomorphata	ANCESTRAL SPECIES	266									ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Seriola	ANCESTRAL SPECIES	57	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Greater amberjack	MODERN SPECIES	89	ENSSDUG00000017208	slc17a7a (ENSSDUG00000017180)	zgc:55558 (ENSSDUG00000017164)	pold1 (ENSSDUG00000017052)	gys1 (ENSSDUG00000017012)	aspdh (ENSSDUG00000016990)	tmem86b (ENSSDUG00000016980)	hspbp1 (ENSSDUG00000016953)	tufm (ENSSDUG00000016896)	ENSSDUG00000016846	ENSSDUG00000016831	tmem11 (ENSSDUG00000016822)	dhrs7b (ENSSDUG00000016792)	CRAMP1 (ENSSDUG00000016689) #20	jpt2 (ENSSDUG00000016654) #21	mapk8ip3 (ENSSDUG00000016594) #22	nme3 (ENSSDUG00000016556) #23	mrps34 (ENSSDUG00000016535) #24	spsb3a (ENSSDUG00000016524) #26	ENSSDUG00000016521	ENSSDUG00000016513	ATP6V0C (ENSSDUG00000016511)	ypel3 (ENSSDUG00000016503)	gdpd3a (ENSSDUG00000016491)	mapk3 (ENSSDUG00000016464)	nudt9 (ENSSDUG00000016449)	ENSSDUG00000016411	rabep2 (ENSSDUG00000016382)	atp2a1 (ENSSDUG00000016334)	NHERF1 (ENSSDUG00000016320)	ENSSDUG00000016304
Yellowtail amberjack	MODERN SPECIES	1990		slc17a7a (ENSSLDG00000006721)	zgc:55558 (ENSSLDG00000006706)	pold1 (ENSSLDG00000006630)	gys1 (ENSSLDG00000006575)	aspdh (ENSSLDG00000006551)	tmem86b (ENSSLDG00000006544)	hspbp1 (ENSSLDG00000006530)	tufm (ENSSLDG00000006494)	ENSSLDG00000006475	natd1 (ENSSLDG00000006460)	tmem11 (ENSSLDG00000006454)	dhrs7b (ENSSLDG00000006425)	CRAMP1 (ENSSLDG00000006361) #20	jpt2 (ENSSLDG00000006338) #21	mapk8ip3 (ENSSLDG00000006106) #22	nme3 (ENSSLDG00000006069) #23
Barramundi perch	MODERN SPECIES	41	nme4 (ENSLCAG00010019128)	eps8l1a (ENSLCAG00010019136)	ENSLCAG00010019140	slc17a7a (ENSLCAG00010019196)	zgc:55558 (ENSLCAG00010019375)	pold1 (ENSLCAG00010000286)	gys1 (ENSLCAG00010000455)	hspbp1 (ENSLCAG00010000553)	tmem86b (ENSLCAG00010000571)	tufm (ENSLCAG00010000578)	KCNJ18 (ENSLCAG00010000586)	natd1 (ENSLCAG00010000613)	tmem11 (ENSLCAG00010000622)	dhrs7b (ENSLCAG00010000630)	jpt2 (ENSLCAG00010000641) #21	mapk8ip3 (ENSLCAG00010000759) #22	nme3 (ENSLCAG00010000887) #23	mrps34 (ENSLCAG00010000891) #24	spsb3a (ENSLCAG00010000900) #26	ATP6V0C (ENSLCAG00010000917)	ypel3 (ENSLCAG00010000937)	gdpd3a (ENSLCAG00010000941)	mapk3 (ENSLCAG00010000951)	nudt9 (ENSLCAG00010001013)	ENSLCAG00010001016	rabep2 (ENSLCAG00010001019)	atp2a1 (ENSLCAG00010001191)	NHERF1 (ENSLCAG00010001599)	ENSLCAG00010001604	xylt2 (ENSLCAG00010001610)	ENSLCAG00010001622
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Turbot	MODERN SPECIES	10	slc17a7a (ENSSMAG00000010243)	zgc:55558 (ENSSMAG00000010231)	pold1 (ENSSMAG00000010177)	gys1 (ENSSMAG00000010135)	aspdh (ENSSMAG00000010102)	tmem86b (ENSSMAG00000023587)	ENSSMAG00000010092	ENSSMAG00000010053	KCNJ18 (ENSSMAG00000010049)	ENSSMAG00000024760	ENSSMAG00000027605	tmem11 (ENSSMAG00000034921)	ENSSMAG00000009989	ENSSMAG00000009909 #20	jpt2 (ENSSMAG00000032371) #21	mapk8ip3 (ENSSMAG00000009876) #22	nme3 (ENSSMAG00000009839) #23	mrps34 (ENSSMAG00000009866) #24	spsb3a (ENSSMAG00000033531) #26	ENSSMAG00000009799	ypel3 (ENSSMAG00000009762)	gdpd3a (ENSSMAG00000009758)	mapk3 (ENSSMAG00000009704)	nudt9 (ENSSMAG00000009681)	ENSSMAG00000009651	ENSSMAG00000009586	ENSSMAG00000009500	ENSSMAG00000009491	ENSSMAG00000028106	xylt2 (ENSSMAG00000009415)	ENSSMAG00000009402
Tongue sole	MODERN SPECIES	8	ENSCSEG00000013715	slc17a7a (ENSCSEG00000013728)	zgc:55558 (ENSCSEG00000013739)	pold1 (ENSCSEG00000013752)	gys1 (ENSCSEG00000013807)	aspdh (ENSCSEG00000013820)	tmem86b (ENSCSEG00000013827)	hspbp1 (ENSCSEG00000013837)	tufm (ENSCSEG00000013841)	ENSCSEG00000013868	natd1 (ENSCSEG00000013872)	tmem11 (ENSCSEG00000013880)	dhrs7b (ENSCSEG00000013883)	CRAMP1 (ENSCSEG00000013899) #20	jpt2 (ENSCSEG00000013950) #21	mapk8ip3 (ENSCSEG00000013970) #22	ENSCSEG00000014034	GDE1 (ENSCSEG00000014036)	DNAAF5 (ENSCSEG00000014045)	prkar1b (ENSCSEG00000014062)	pdgfab (ENSCSEG00000014076)	ENSCSEG00000014093	sun1b (ENSCSEG00000014129)	ENSCSEG00000014179	gprc5ba (ENSCSEG00000014184)	proza (ENSCSEG00000014186)	GPR139 (ENSCSEG00000014194)	ENSCSEG00000014201	ENSCSEG00000014209	kdelr2a (ENSCSEG00000014214)	mfsd13al (ENSCSEG00000014223)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000001617	slc17a7a (ENSMAMG00000001662)	zgc:55558 (ENSMAMG00000025989)	pold1 (ENSMAMG00000001747)	gys1 (ENSMAMG00000001811)	aspdh (ENSMAMG00000001860)	tmem86b (ENSMAMG00000001891)	ENSMAMG00000001916	ENSMAMG00000002053	KCNJ18 (ENSMAMG00000002065)	ENSMAMG00000028516	TMEM11 (ENSMAMG00000002076)	ENSMAMG00000002088	ENSMAMG00000002123 #20	jpt2 (ENSMAMG00000027505) #21	mapk8ip3 (ENSMAMG00000002307) #22	nme3 (ENSMAMG00000028290) #23	mrps34 (ENSMAMG00000002399) #24	spsb3a (ENSMAMG00000002407) #26	ENSMAMG00000025593	ypel3 (ENSMAMG00000002454)	gdpd3a (ENSMAMG00000002464)	mapk3 (ENSMAMG00000002487)	nudt9 (ENSMAMG00000002516)	ENSMAMG00000002536	rabep2 (ENSMAMG00000002587)	atp2a1 (ENSMAMG00000002646)	ENSMAMG00000002829	ENSMAMG00000002846	xylt2 (ENSMAMG00000002887)	ENSMAMG00000002935
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00390000015495	ENSGT00940000163663.A.a	ENSGT00730000111100.a.a	ENSGT00940000156643	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.c.b	ENSGT00940000155335.s.b	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000002982	ENSBSLG00000002987	ENSBSLG00000003572	desi1a (ENSBSLG00000003614)	flii (ENSBSLG00000003729)	LLGL1 (ENSBSLG00000003840)	ENSBSLG00000004007	drg2 (ENSBSLG00000004069)	gfer (ENSBSLG00000004128)	syngr3a (ENSBSLG00000004131)	znf598 (ENSBSLG00000004139)	tmem11 (ENSBSLG00000004163)	dhrs7b (ENSBSLG00000004172)	CRAMP1 (ENSBSLG00000004194) #20	jpt2 (ENSBSLG00000004263) #21	mapk8ip3 (ENSBSLG00000004279) #22	nme3 (ENSBSLG00000004506) #23	mrps34 (ENSBSLG00000004531) #24	spsb3a (ENSBSLG00000004535) #26	ATP6V0C (ENSBSLG00000004541)	ypel3 (ENSBSLG00000004544)	gdpd3a (ENSBSLG00000004547)	mapk3 (ENSBSLG00000004559)	nudt9 (ENSBSLG00000004681)	ENSBSLG00000004683	rabep2 (ENSBSLG00000004686)	atp2a1 (ENSBSLG00000004692)	ENSBSLG00000004705	ENSBSLG00000004709	xylt2 (ENSBSLG00000004710)	ENSBSLG00000004711
Climbing perch	MODERN SPECIES	21	ENSATEG00000029203	ENSATEG00000030048	ENSATEG00000005806	ENSATEG00000005774	FLII (ENSATEG00000005618)	LLGL1 (ENSATEG00000005486)	MYO15A (ENSATEG00000027952)	drg2 (ENSATEG00000005398)	gfer (ENSATEG00000005389)	syngr3a (ENSATEG00000028278)	znf598 (ENSATEG00000005281)	ENSATEG00000005275	ENSATEG00000005251	ENSATEG00000005090 #20	jpt2 (ENSATEG00000029497) #21	mapk8ip3 (ENSATEG00000004980) #22	nme3 (ENSATEG00000026316) #23	mrps34 (ENSATEG00000004971) #24	spsb3a (ENSATEG00000029439) #26	ENSATEG00000004909	ypel3 (ENSATEG00000004884)	gdpd3a (ENSATEG00000004874)	mapk3 (ENSATEG00000004831)	nudt9 (ENSATEG00000004815)	ENSATEG00000004775	ENSATEG00000004673	ENSATEG00000004550	ENSATEG00000004530	ENSATEG00000004481	xylt2 (ENSATEG00000004417)	ENSATEG00000004407
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Tetraodontidae	ANCESTRAL SPECIES	8													ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a	ENSGT00940000157800
Fugu	MODERN SPECIES	17	LLGL1 (ENSTRUG00000017766)	ENSTRUG00000031144	ENSTRUG00000029118	ENSTRUG00000028068	drg2 (ENSTRUG00000001503)	gfer (ENSTRUG00000001812)	syngr3a (ENSTRUG00000001846)	znf598 (ENSTRUG00000002074)	slc25a17 (ENSTRUG00000002474)	ENSTRUG00000027419	rpusd1 (ENSTRUG00000003041)	ENSTRUG00000019795	dhrs7b (ENSTRUG00000020892)	CRAMP1 (ENSTRUG00000003674) #20	jpt2 (ENSTRUG00000003866) #21	mapk8ip3 (ENSTRUG00000004041) #22	nme3 (ENSTRUG00000023495) #23	mrps34 (ENSTRUG00000005029) #24	spsb3a (ENSTRUG00000005089) #26	ATP6V0C (ENSTRUG00000014516)	ypel3 (ENSTRUG00000024120)	gdpd3a (ENSTRUG00000005467)	mapk3 (ENSTRUG00000005697)	nudt9 (ENSTRUG00000006123)	ENSTRUG00000020291	rabep2 (ENSTRUG00000019792)	atp2a1 (ENSTRUG00000006271)	NHERF1 (ENSTRUG00000007970)	xylt2 (ENSTRUG00000008009)	ENSTRUG00000019981	RECQL5 (ENSTRUG00000008246)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000011502	ENSTNIG00000011503	desi1a (ENSTNIG00000011504)	flii (ENSTNIG00000011505)	LLGL1 (ENSTNIG00000011506)	MYO15A (ENSTNIG00000011507)	drg2 (ENSTNIG00000002655)	gfer (ENSTNIG00000002656)	syngr3a (ENSTNIG00000002657)	znf598 (ENSTNIG00000002658)	slc25a17 (ENSTNIG00000002659)	rpusd1 (ENSTNIG00000002660)	dhrs7b (ENSTNIG00000002661)	CRAMP1 (ENSTNIG00000002662) #20	jpt2 (ENSTNIG00000005456) #21	mapk8ip3 (ENSTNIG00000011577) #22	nme3 (ENSTNIG00000011578) #23	mrps34 (ENSTNIG00000011579) #24	spsb3a (ENSTNIG00000011580) #26	ATP6V0C (ENSTNIG00000011581)	ypel3 (ENSTNIG00000002428)	gdpd3a (ENSTNIG00000011582)	mapk3 (ENSTNIG00000011583)	nudt9 (ENSTNIG00000011584)	rabep2 (ENSTNIG00000011585)	atp2a1 (ENSTNIG00000011586)	NHERF1 (ENSTNIG00000011587)	ENSTNIG00000011588	ENSTNIG00000011589	xylt2 (ENSTNIG00000011590)	ENSTNIG00000011591
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Ballan wrasse	MODERN SPECIES	483	pold1 (ENSLBEG00000023381)	SLC17A7 (ENSLBEG00000023479)	zgc:55558 (ENSLBEG00000023534)	gys1 (ENSLBEG00000023578)	aspdh (ENSLBEG00000023642)	tmem86b (ENSLBEG00000023679)	hspbp1 (ENSLBEG00000023696)	tufm (ENSLBEG00000023735)	ENSLBEG00000023771	ENSLBEG00000023789	ENSLBEG00000023816	tmem11 (ENSLBEG00000023827)	dhrs7b (ENSLBEG00000023840)	CRAMP1 (ENSLBEG00000023879) #20	jpt2 (ENSLBEG00000023929) #21	mapk8ip3 (ENSLBEG00000024197) #22	nme3 (ENSLBEG00000024609) #23	mrps34 (ENSLBEG00000024632) #24	spsb3a (ENSLBEG00000024655) #26	ATP6V0C (ENSLBEG00000024682)	ypel3 (ENSLBEG00000024696)	gdpd3a (ENSLBEG00000024734)	mapk3 (ENSLBEG00000024780)	nudt9 (ENSLBEG00000024813)	ENSLBEG00000024828	rabep2 (ENSLBEG00000024873)	atp2a1 (ENSLBEG00000024948)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	35	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
European seabass	MODERN SPECIES	21	eps8l1a (ENSDLAG00005022929)	ENSDLAG00005022935	slc17a7a (ENSDLAG00005022968)	zgc:55558 (ENSDLAG00005030311)	pold1 (ENSDLAG00005023332)	gys1 (ENSDLAG00005023480)	ENSDLAG00005031127	tmem86b (ENSDLAG00005023510)	ENSDLAG00005023516	ENSDLAG00005033708	ENSDLAG00005026864	NATD1 (ENSDLAG00005035103)	TMEM11 (ENSDLAG00005029286)	ENSDLAG00005023548	ENSDLAG00005023553 #20	mapk8ip3 (ENSDLAG00005023641) #22	nme3 (ENSDLAG00005024910) #23	spsb3a (ENSDLAG00005024914) #26	ENSDLAG00005024922	ypel3 (ENSDLAG00005032337)	gdpd3a (ENSDLAG00005027202)	mapk3 (ENSDLAG00005024940)	nudt9 (ENSDLAG00005032301)	ENSDLAG00005025104	ENSDLAG00005025109	ENSDLAG00005025196	ENSDLAG00005032996	ENSDLAG00005029131	xylt2 (ENSDLAG00005025732)	ENSDLAG00005025748	cdr2l (ENSDLAG00005033786)
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005015865	slc17a7a (ENSLCRG00005014571)	zgc:55558 (ENSLCRG00005014562)	pold1 (ENSLCRG00005014529)	gys1 (ENSLCRG00005014485)	aspdh (ENSLCRG00005014482)	tmem86b (ENSLCRG00005014480)	hspbp1 (ENSLCRG00005014479)	tufm (ENSLCRG00005014430)	ENSLCRG00005014427	ENSLCRG00005014423	natd1 (ENSLCRG00005014421)	tmem11 (ENSLCRG00005014419)	dhrs7b (ENSLCRG00005014417)	CRAMP1 (ENSLCRG00005014413) #20	mapk8ip3 (ENSLCRG00005009280) #22	nme3 (ENSLCRG00005009225) #23	tspan4b (ENSLCRG00005009221)	ENSLCRG00005009218	ENSLCRG00005009207	jpt2 (ENSLCRG00005009205) #21	PRR12 (ENSLCRG00005009202)	prrg2 (ENSLCRG00005009199)	rras (ENSLCRG00005009191)	ENSLCRG00005009189	AP2A1 (ENSLCRG00005009075)	prmt1 (ENSLCRG00005008428)	rab18b (ENSLCRG00005008411)	ENSLCRG00005008407	ENSLCRG00005007492	ENSLCRG00005007486
Gilthead seabream	MODERN SPECIES	15	slc17a7a (ENSSAUG00010013485)	zgc:55558 (ENSSAUG00010013455)	pold1 (ENSSAUG00010012637)	gys1 (ENSSAUG00010012554)	aspdh (ENSSAUG00010012547)	tmem86b (ENSSAUG00010012546)	hspbp1 (ENSSAUG00010012543)	tufm (ENSSAUG00010012317)	KCNJ18 (ENSSAUG00010012314)	ENSSAUG00010012312	natd1 (ENSSAUG00010012309)	tmem11 (ENSSAUG00010012307)	dhrs7b (ENSSAUG00010012305)	CRAMP1 (ENSSAUG00010012296) #20	jpt2 (ENSSAUG00010012292) #21	mapk8ip3 (ENSSAUG00010005892) #22	nme3 (ENSSAUG00010005774) #23	mrps34 (ENSSAUG00010005772) #24	spsb3a (ENSSAUG00010005769) #26	ATP6V0C (ENSSAUG00010005767)	ypel3 (ENSSAUG00010005764)	gdpd3a (ENSSAUG00010005763)	mapk3 (ENSSAUG00010003878)	nudt9 (ENSSAUG00010003828)	ENSSAUG00010003812	rabep2 (ENSSAUG00010003807)	rabep2 (ENSSAUG00010003669)	atp2a1 (ENSSAUG00010002949)	NHERF1 (ENSSAUG00010002839)	ENSSAUG00010002818	xylt2 (ENSSAUG00010025955)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Pike perch	MODERN SPECIES	38	ENSSLUG00000009321	slc17a7a (ENSSLUG00000005346)	zgc:55558 (ENSSLUG00000004975)	pold1 (ENSSLUG00000004188)	gys1 (ENSSLUG00000004027)	aspdh (ENSSLUG00000003987)	tmem86b (ENSSLUG00000003983)	hspbp1 (ENSSLUG00000003980)	tufm (ENSSLUG00000003934)	KCNJ18 (ENSSLUG00000003921)	natd1 (ENSSLUG00000003902)	tmem11 (ENSSLUG00000003892)	dhrs7b (ENSSLUG00000003889)	CRAMP1 (ENSSLUG00000003881) #20	jpt2 (ENSSLUG00000003867) #21	mapk8ip3 (ENSSLUG00000003797) #22	nme3 (ENSSLUG00000003715) #23	mrps34 (ENSSLUG00000003705) #24	spsb3a (ENSSLUG00000003685) #26	ATP6V0C (ENSSLUG00000003659)	ENSSLUG00000003652	ypel3 (ENSSLUG00000003644)	gdpd3a (ENSSLUG00000003635)	mapk3 (ENSSLUG00000003484)	nudt9 (ENSSLUG00000003415)	ENSSLUG00000003385	rabep2 (ENSSLUG00000003315)	atp2a1 (ENSSLUG00000002201)	NHERF1 (ENSSLUG00000002056)	ENSSLUG00000002047	xylt2 (ENSSLUG00000001870)
Channel bull blenny	MODERN SPECIES	22	ENSCGOG00000005955	slc17a7a (ENSCGOG00000005971)	zgc:55558 (ENSCGOG00000006221)	pold1 (ENSCGOG00000006275)	gys1 (ENSCGOG00000006655)	aspdh (ENSCGOG00000008781)	tmem86b (ENSCGOG00000008795)	hspbp1 (ENSCGOG00000008801)	tufm (ENSCGOG00000008932)	ENSCGOG00000009170	natd1 (ENSCGOG00000009173)	tmem11 (ENSCGOG00000009177)	dhrs7b (ENSCGOG00000009179)	CRAMP1 (ENSCGOG00000009185) #20	jpt2 (ENSCGOG00000009198) #21	mapk8ip3 (ENSCGOG00000009319) #22	nme3 (ENSCGOG00000012868) #23	mrps34 (ENSCGOG00000012876) #24	spsb3a (ENSCGOG00000012893) #26	ATP6V0C (ENSCGOG00000012922)	ypel3 (ENSCGOG00000012998)	gdpd3a (ENSCGOG00000013024)	mapk3 (ENSCGOG00000013077)	nudt9 (ENSCGOG00000014380)	ENSCGOG00000014398	rabep2 (ENSCGOG00000014429)	atp2a1 (ENSCGOG00000014471)	NHERF1 (ENSCGOG00000014780)	ENSCGOG00000014820	xylt2 (ENSCGOG00000014843)	ENSCGOG00000015132
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Lumpfish	MODERN SPECIES	23	ENSCLMG00005008270	slc17a7a (ENSCLMG00005008266)	zgc:55558 (ENSCLMG00005008265)	pold1 (ENSCLMG00005007102)	gys1 (ENSCLMG00005007023)	aspdh (ENSCLMG00005007017)	tmem86b (ENSCLMG00005007016)	hspbp1 (ENSCLMG00005007013)	tufm (ENSCLMG00005006811)	ENSCLMG00005006803	natd1 (ENSCLMG00005006801)	tmem11 (ENSCLMG00005006784)	dhrs7b (ENSCLMG00005006783)	CRAMP1 (ENSCLMG00005006714) #20	jpt2 (ENSCLMG00005006712) #21	mapk8ip3 (ENSCLMG00005006709) #22	nme3 (ENSCLMG00005006608) #23	mrps34 (ENSCLMG00005006605) #24	spsb3a (ENSCLMG00005006602) #26	ATP6V0C (ENSCLMG00005006585)	ypel3 (ENSCLMG00005006583)	gdpd3a (ENSCLMG00005006581)	mapk3 (ENSCLMG00005005860)	nudt9 (ENSCLMG00005005844)	ENSCLMG00005005842	rabep2 (ENSCLMG00005005831)	atp2a1 (ENSCLMG00005005812)	NHERF1 (ENSCLMG00005005810)	ENSCLMG00005005809	ENSCLMG00005005807	xylt2 (ENSCLMG00005005805)
Stickleback	MODERN SPECIES	10	ENSGACG00000012881	slc17a7a (ENSGACG00000012885)	zgc:55558 (ENSGACG00000012896)	pold1 (ENSGACG00000012911)	gys1 (ENSGACG00000012936)	aspdh (ENSGACG00000012942)	tmem86b (ENSGACG00000012950)	hspbp1 (ENSGACG00000012953)	tufm (ENSGACG00000012961)	ENSGACG00000012980	natd1 (ENSGACG00000012984)	tmem11 (ENSGACG00000012988)	dhrs7b (ENSGACG00000012990)	CRAMP1 (ENSGACG00000012998) #20	jpt2 (ENSGACG00000013012) #21	mapk8ip3 (ENSGACG00000013019) #22	nme3 (ENSGACG00000013028) #23	mrps34 (ENSGACG00000013041) #24	ENSGACG00000013046	ENSGACG00000013048	HSPA2 (ENSGACG00000013051)	ENSGACG00000013052	ENSGACG00000013055	spsb3a (ENSGACG00000013059) #26	ATP6V0C (ENSGACG00000013063)	ypel3 (ENSGACG00000013080)	gdpd3a (ENSGACG00000013095)	mapk3 (ENSGACG00000013102)	nudt9 (ENSGACG00000013119)	ENSGACG00000013134	ENSGACG00000013138
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Oryzias	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT01020000230358.h.d.b.a.c.b.t.a.a.b.a.a.b	ENSGT01090000259993.B.c.b.a.a.a.a.a.b	ENSGT01020000230358.h.d.b.b.g.b.a.b.b.a.a	ENSGT01090000259993.B.c.b.a.a.a.a.a.a	ENSGT01020000230358.h.d.b.a.c.b.t.b	ENSGT01020000230358.h.d.b.b.g.b.a.b.b.a.b.a.b	ENSGT01100000263566.b.b.b.a.a.b.b.a.a.a.b.a.a.a.b	ENSGT01090000259993.C.a	ENSGT01090000259993.D.b.d	ENSGT00940000163849.i.a.a.a.b.s.b	ENSGT01100000263566.b.b.b.a.a.b.b.a.a.a.b.a.a.b.b	ENSGT01020000230358.h.d.b.a.c.b.t.a.a.b.b
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26
Javanese ricefish	MODERN SPECIES	22	eps8l1a (ENSOJAG00000008902)	ENSOJAG00000008488	slc17a7a (ENSOJAG00000007627)	zgc:55558 (ENSOJAG00000007499)	gys1 (ENSOJAG00000007074)	aspdh (ENSOJAG00000006993)	tmem86b (ENSOJAG00000006978)	hspbp1 (ENSOJAG00000006954)	tufm (ENSOJAG00000006746)	ENSOJAG00000006716	natd1 (ENSOJAG00000006702)	tmem11 (ENSOJAG00000006685)	dhrs7b (ENSOJAG00000006625)	CRAMP1 (ENSOJAG00000006411) #20	jpt2 (ENSOJAG00000006396) #21	mapk8ip3 (ENSOJAG00000006152) #22	nme3 (ENSOJAG00000006123) #23	mrps34 (ENSOJAG00000006105) #24	spsb3a (ENSOJAG00000006086) #26	ENSOJAG00000006044	ENSOJAG00000006018	ENSOJAG00000006005	ENSOJAG00000005980	ENSOJAG00000005959	ENSOJAG00000005929	ENSOJAG00000005917	ENSOJAG00000005896	ENSOJAG00000005880	ENSOJAG00000005868	ENSOJAG00000005847	ENSOJAG00000005838
Indian medaka	MODERN SPECIES	9	ENSOMEG00000016616	slc17a7a (ENSOMEG00000016669)	zgc:55558 (ENSOMEG00000016685)	pold1 (ENSOMEG00000016731)	gys1 (ENSOMEG00000016807)	aspdh (ENSOMEG00000016841)	hspbp1 (ENSOMEG00000016890)	tufm (ENSOMEG00000016958)	ENSOMEG00000016976	ENSOMEG00000000425	natd1 (ENSOMEG00000017025)	tmem11 (ENSOMEG00000017034)	dhrs7b (ENSOMEG00000017059)	CRAMP1 (ENSOMEG00000017162) #20	jpt2 (ENSOMEG00000017199) #21	mapk8ip3 (ENSOMEG00000017605) #22	nme3 (ENSOMEG00000017231) #23	mrps34 (ENSOMEG00000017698) #24	spsb3a (ENSOMEG00000017747) #26	ENSOMEG00000017771	ENSOMEG00000017793	ENSOMEG00000017805	ENSOMEG00000017812	ENSOMEG00000017819	ENSOMEG00000017831	ENSOMEG00000000440	ENSOMEG00000017848	ENSOMEG00000017855	ENSOMEG00000017860	ENSOMEG00000017865	ENSOMEG00000017873
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26
Japanese Medaka HdrR	MODERN SPECIES	22	slc17a7a (ENSORLG00000011296)	zgc:55558 (ENSORLG00000024443)	pold1 (ENSORLG00000011359)	gys1 (ENSORLG00000011434)	aspdh (ENSORLG00000011451)	tmem86b (ENSORLG00000011461)	hspbp1 (ENSORLG00000011480)	tufm (ENSORLG00000011497)	ENSORLG00000011503	ENSORLG00000023644	natd1 (ENSORLG00000022403)	tmem11 (ENSORLG00000011519)	dhrs7b (ENSORLG00000011564)	CRAMP1 (ENSORLG00000011587) #20	jpt2 (ENSORLG00000011625) #21	mapk8ip3 (ENSORLG00000011718) #22	nme3 (ENSORLG00000011728) #23	mrps34 (ENSORLG00000011731) #24	spsb3a (ENSORLG00000011746) #26	ENSORLG00000030329	ENSORLG00000024303	ENSORLG00000028651	ENSORLG00000029391	ENSORLG00000023671	ENSORLG00000011755	ENSORLG00000022719	ENSORLG00000026700	ENSORLG00000022902	ENSORLG00000028397	ENSORLG00000022945	ENSORLG00000023162
Chinese medaka	MODERN SPECIES	989	xpo6 (ENSOSIG00000005417)	nme4 (ENSOSIG00000005409)	eps8l1a (ENSOSIG00000005406)	ENSOSIG00000005401	slc17a7a (ENSOSIG00000005226)	zgc:55558 (ENSOSIG00000005221)	pold1 (ENSOSIG00000005194)	gys1 (ENSOSIG00000005081)	aspdh (ENSOSIG00000005069)	tmem86b (ENSOSIG00000005067)	KCNJ12 (ENSOSIG00000020976)	ENSOSIG00000020974	dhrs7b (ENSOSIG00000020973)	CRAMP1 (ENSOSIG00000020962) #20	jpt2 (ENSOSIG00000020957) #21	mapk8ip3 (ENSOSIG00000020930) #22	nme3 (ENSOSIG00000020889) #23	mrps34 (ENSOSIG00000020884) #24	spsb3a (ENSOSIG00000020875) #26	ENSOSIG00000020870	ENSOSIG00000020866	ENSOSIG00000020862	ENSOSIG00000020854
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
NAME_6	ANCESTRAL SPECIES	66	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520
Amazon molly	MODERN SPECIES	392	zgc:55558 (ENSPFOG00000008086)	pold1 (ENSPFOG00000007750)	gys1 (ENSPFOG00000007449)	aspdh (ENSPFOG00000007369)	tmem86b (ENSPFOG00000007347)	hspbp1 (ENSPFOG00000007285)	ENSPFOG00000021722	tufm (ENSPFOG00000007043)	ENSPFOG00000021736	ENSPFOG00000006994	natd1 (ENSPFOG00000006975)	tmem11 (ENSPFOG00000021915)	dhrs7b (ENSPFOG00000006930)	CRAMP1 (ENSPFOG00000006747) #20	jpt2 (ENSPFOG00000006687) #21	mapk8ip3 (ENSPFOG00000006351) #22	nme3 (ENSPFOG00000006239) #23	mrps34 (ENSPFOG00000006202) #24	spsb3a (ENSPFOG00000006149) #26
Sailfin molly	MODERN SPECIES	891										ENSPLAG00000018021	natd1 (ENSPLAG00000018045)	tmem11 (ENSPLAG00000018053)	dhrs7b (ENSPLAG00000018084)	CRAMP1 (ENSPLAG00000018143) #20	jpt2 (ENSPLAG00000018162) #21	mapk8ip3 (ENSPLAG00000018259) #22	mrps34 (ENSPLAG00000018270) #24	nme3 (ENSPLAG00000019539) #23	spsb3a (ENSPLAG00000019620) #26	ATP6V0C (ENSPLAG00000019629)	ypel3 (ENSPLAG00000019643)	gdpd3a (ENSPLAG00000019727)	mapk3 (ENSPLAG00000019751)	nudt9 (ENSPLAG00000019757)	ENSPLAG00000019794	rabep2 (ENSPLAG00000019838)	atp2a1 (ENSPLAG00000019897)	NHERF1 (ENSPLAG00000019907)	ENSPLAG00000019912	xylt2 (ENSPLAG00000000442)	ENSPLAG00000019956
Guppy	MODERN SPECIES	460	xylt1 (ENSPREG00000013730)	slc17a7a (ENSPREG00000013748)	zgc:55558 (ENSPREG00000013776)	pold1 (ENSPREG00000013794)	gys1 (ENSPREG00000013821)	aspdh (ENSPREG00000013833)	tmem86b (ENSPREG00000013874)	hspbp1 (ENSPREG00000013886)	tufm (ENSPREG00000013913)	ENSPREG00000013949	natd1 (ENSPREG00000013951)	tmem11 (ENSPREG00000013969)	dhrs7b (ENSPREG00000013978)	CRAMP1 (ENSPREG00000014002) #20	jpt2 (ENSPREG00000014084) #21	mapk8ip3 (ENSPREG00000014230) #22	nme3 (ENSPREG00000014544) #23	mrps34 (ENSPREG00000015105) #24	spsb3a (ENSPREG00000015146) #26	ATP6V0C (ENSPREG00000015166)	ypel3 (ENSPREG00000015178)	gdpd3a (ENSPREG00000015195)	mapk3 (ENSPREG00000015248)	nudt9 (ENSPREG00000015271)	ENSPREG00000015319	rabep2 (ENSPREG00000015356)	atp2a1 (ENSPREG00000015392)	NHERF1 (ENSPREG00000015509)	ENSPREG00000015539	xylt2 (ENSPREG00000015639)	ENSPREG00000015709
Platyfish	MODERN SPECIES	7	slc17a7a (ENSXMAG00000011681)	zgc:55558 (ENSXMAG00000011691)	pold1 (ENSXMAG00000011702)	gys1 (ENSXMAG00000011787)	aspdh (ENSXMAG00000011818)	tmem86b (ENSXMAG00000027194)	hspbp1 (ENSXMAG00000011831)	tufm (ENSXMAG00000011848)	ENSXMAG00000019673	ENSXMAG00000025944	natd1 (ENSXMAG00000028964)	tmem11 (ENSXMAG00000011861)	dhrs7b (ENSXMAG00000011863)	CRAMP1 (ENSXMAG00000011872) #20	jpt2 (ENSXMAG00000011884) #21	mapk8ip3 (ENSXMAG00000011891) #22	nme3 (ENSXMAG00000011927) #23	mrps34 (ENSXMAG00000011943) #24	spsb3a (ENSXMAG00000020991) #26	ATP6V0C (ENSXMAG00000023815)	ypel3 (ENSXMAG00000027984)	gdpd3a (ENSXMAG00000011975)	mapk3 (ENSXMAG00000024764)	nudt9 (ENSXMAG00000012034)	ENSXMAG00000021235	rabep2 (ENSXMAG00000012046)	atp2a1 (ENSXMAG00000012051)	NHERF1 (ENSXMAG00000012101)	ENSXMAG00000022771	xylt2 (ENSXMAG00000012122)	ENSXMAG00000012130
NAME_4	ANCESTRAL SPECIES	88	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Sheepshead minnow	MODERN SPECIES	1170												tmem11 (ENSCVAG00000016947)	dhrs7b (ENSCVAG00000016939)	CRAMP1 (ENSCVAG00000016910) #20	jpt2 (ENSCVAG00000016821) #21	mapk8ip3 (ENSCVAG00000016799) #22	nme3 (ENSCVAG00000016317) #23	mrps34 (ENSCVAG00000016300) #24	spsb3a (ENSCVAG00000016294) #26	ATP6V0C (ENSCVAG00000016273)	ypel3 (ENSCVAG00000000415)	gdpd3a (ENSCVAG00000016254)	mapk3 (ENSCVAG00000016168)	nudt9 (ENSCVAG00000015371)	ENSCVAG00000015346
Mummichog	MODERN SPECIES	2491	ENSFHEG00000021008	slc17a7a (ENSFHEG00000020886)	zgc:55558 (ENSFHEG00000020836)	pold1 (ENSFHEG00000020825)	gys1 (ENSFHEG00000020804)	aspdh (ENSFHEG00000020744)	tmem86b (ENSFHEG00000020697)	hspbp1 (ENSFHEG00000020670)	tufm (ENSFHEG00000020646)	ENSFHEG00000020609	ENSFHEG00000020598	natd1 (ENSFHEG00000020579)	dhrs7b (ENSFHEG00000020571)	CRAMP1 (ENSFHEG00000020520) #20	jpt2 (ENSFHEG00000020500) #21	mapk8ip3 (ENSFHEG00000020471) #22	nme3 (ENSFHEG00000019990) #23	mrps34 (ENSFHEG00000019970) #24	spsb3a (ENSFHEG00000019967) #26	ATP6V0C (ENSFHEG00000019941)	ypel3 (ENSFHEG00000019925)	gdpd3a (ENSFHEG00000019900)	mapk3 (ENSFHEG00000019871)	nudt9 (ENSFHEG00000019827)	ENSFHEG00000019820	rabep2 (ENSFHEG00000019761)	atp2a1 (ENSFHEG00000019714)	NHERF1 (ENSFHEG00000019549)	ENSFHEG00000019543	xylt2 (ENSFHEG00000019532)	ENSFHEG00000019494
Aplocheiloidei	ANCESTRAL SPECIES	53	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015002001	LGALS1 (ENSNFUG00015001997)	gys1 (ENSNFUG00015001951)	aspdh (ENSNFUG00015001913)	tmem86b (ENSNFUG00015001905)	HSPBP1 (ENSNFUG00015001893)	ENSNFUG00015001884	TUFM (ENSNFUG00015001810)	KCNJ12 (ENSNFUG00015001795)	ENSNFUG00015001772	tmem11 (ENSNFUG00015001747)	ENSNFUG00015001745	DHRS7B (ENSNFUG00015001741)	CRAMP1 (ENSNFUG00015001739) #20	HN1L (ENSNFUG00015001732) #21	mapk8ip3 (ENSNFUG00015001690) #22	NME3 (ENSNFUG00015001586) #23	MRPS34 (ENSNFUG00015001543) #24	SPSB3A (ENSNFUG00015001538) #26	ATP6V0C (ENSNFUG00015001526)	YPEL3 (ENSNFUG00015001516)	gdpd3a (ENSNFUG00015001469)	MAPK3 (ENSNFUG00015001405)	NUDT9 (ENSNFUG00015001381)	SI (ENSNFUG00015001351)	ENSNFUG00015001338	rabep2 (ENSNFUG00015001317)	atp2a1 (ENSNFUG00015000775)	NHERF1 (ENSNFUG00015000490)	CABZ01066957.1 (ENSNFUG00015000305)	XYLT2 (ENSNFUG00015000108)
Mangrove rivulus	MODERN SPECIES	108	slc17a7a (ENSKMAG00000010199)	zgc:55558 (ENSKMAG00000010093)	pold1 (ENSKMAG00000010007)	gys1 (ENSKMAG00000009934)	aspdh (ENSKMAG00000009888)	tmem86b (ENSKMAG00000009860)	hspbp1 (ENSKMAG00000009840)	tufm (ENSKMAG00000009794)	ENSKMAG00000009774	ENSKMAG00000009750	natd1 (ENSKMAG00000009735)	tmem11 (ENSKMAG00000009728)	dhrs7b (ENSKMAG00000009685)	CRAMP1 (ENSKMAG00000009624) #20	jpt2 (ENSKMAG00000009589) #21	mapk8ip3 (ENSKMAG00000009552) #22	nme3 (ENSKMAG00000009532) #23	mrps34 (ENSKMAG00000009519) #24	spsb3a (ENSKMAG00000009491) #26	ATP6V0C (ENSKMAG00000009477)	ypel3 (ENSKMAG00000009444)	gdpd3a (ENSKMAG00000009427)	mapk3 (ENSKMAG00000009381)	nudt9 (ENSKMAG00000009349)	ENSKMAG00000009327	rabep2 (ENSKMAG00000009303)	atp2a1 (ENSKMAG00000009150)	NHERF1 (ENSKMAG00000009111)	ENSKMAG00000009095	xylt2 (ENSKMAG00000009043)	ENSKMAG00000009013
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Nile tilapia	MODERN SPECIES	16	zgc:55558 (ENSONIG00000029959)	pold1 (ENSONIG00000019377)	gys1 (ENSONIG00000019382)	aspdh (ENSONIG00000019385)	tmem86b (ENSONIG00000040160)	tufm (ENSONIG00000019389)	hspbp1 (ENSONIG00000019386)	KCNJ18 (ENSONIG00000021193)	ENSONIG00000038992	ENSONIG00000023291	natd1 (ENSONIG00000029787)	tmem11 (ENSONIG00000033344)	dhrs7b (ENSONIG00000019392)	CRAMP1 (ENSONIG00000019393) #20	jpt2 (ENSONIG00000019396) #21	mapk8ip3 (ENSONIG00000019397) #22	nme3 (ENSONIG00000033641) #23	mrps34 (ENSONIG00000019400) #24	spsb3a (ENSONIG00000019402) #26	ATP6V0C (ENSONIG00000019404)	ypel3 (ENSONIG00000039300)	gdpd3a (ENSONIG00000019407)	mapk3 (ENSONIG00000019408)	nudt9 (ENSONIG00000019410)	ENSONIG00000019412	rabep2 (ENSONIG00000019414)	atp2a1 (ENSONIG00000019415)	NHERF1 (ENSONIG00000019417)	ENSONIG00000019418	xylt2 (ENSONIG00000019421)	ENSONIG00000019425
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	36	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Haplochromini	ANCESTRAL SPECIES	37	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Burton s mouthbrooder	MODERN SPECIES	565													dhrs7b (ENSHBUG00000021388)	CRAMP1 (ENSHBUG00000021335) #20	jpt2 (ENSHBUG00000021229) #21	mapk8ip3 (ENSHBUG00000021187) #22	nme3 (ENSHBUG00000020775) #23	mrps34 (ENSHBUG00000020755) #24	spsb3a (ENSHBUG00000020737) #26	ATP6V0C (ENSHBUG00000020715)	ypel3 (ENSHBUG00000020708)	gdpd3a (ENSHBUG00000020700)	mapk3 (ENSHBUG00000020688)	nudt9 (ENSHBUG00000020648)	ENSHBUG00000020638	rabep2 (ENSHBUG00000020603)	atp2a1 (ENSHBUG00000020557)	NHERF1 (ENSHBUG00000020464)	ENSHBUG00000020452	xylt2 (ENSHBUG00000020384)	ENSHBUG00000020342
Haplochromini_A	ANCESTRAL SPECIES	37	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Haplochromini_B	ANCESTRAL SPECIES	41	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Eastern happy	MODERN SPECIES	16	zgc:55558 (ENSACLG00000007314)	pold1 (ENSACLG00000007207)	gys1 (ENSACLG00000007332)	aspdh (ENSACLG00000007365)	tmem86b (ENSACLG00000007370)	hspbp1 (ENSACLG00000007380)	tufm (ENSACLG00000007403)	ENSACLG00000007411	ENSACLG00000007415	natd1 (ENSACLG00000007440)	tmem11 (ENSACLG00000007446)	ENSACLG00000007455	dhrs7b (ENSACLG00000007460)	CRAMP1 (ENSACLG00000007480) #20	jpt2 (ENSACLG00000007520) #21	mapk8ip3 (ENSACLG00000007535) #22	nme3 (ENSACLG00000007786) #23	mrps34 (ENSACLG00000007811) #24	spsb3a (ENSACLG00000007819) #26	ATP6V0C (ENSACLG00000007834)	ypel3 (ENSACLG00000007835)	gdpd3a (ENSACLG00000007846)	mapk3 (ENSACLG00000007887)	nudt9 (ENSACLG00000007902)	ENSACLG00000007907	rabep2 (ENSACLG00000007938)	atp2a1 (ENSACLG00000007975)	NHERF1 (ENSACLG00000008018)	ENSACLG00000008021	xylt2 (ENSACLG00000008030)	ENSACLG00000008042
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005009815	ENSMZEG00005009804	ENSMZEG00005009800	ENSMZEG00005009792	ENSMZEG00005009781	ENSMZEG00005009774	ENSMZEG00005009763	ENSMZEG00005009755	ENSMZEG00005009745	ENSMZEG00005009735	ENSMZEG00005009728	ENSMZEG00005009719	dhrs7b (ENSMZEG00005009693)	CRAMP1 (ENSMZEG00005009624) #20	jpt2 (ENSMZEG00005009602) #21	mapk8ip3 (ENSMZEG00005009202) #22	mrps34 (ENSMZEG00005009087) #24	spsb3a (ENSMZEG00005009070) #26	ATP6V0C (ENSMZEG00005009057)	ypel3 (ENSMZEG00005009048)	gdpd3a (ENSMZEG00005009007)	mapk3 (ENSMZEG00005008971)	nudt9 (ENSMZEG00005008961)	ENSMZEG00005008941	rabep2 (ENSMZEG00005008905)	atp2a1 (ENSMZEG00005008833)	NHERF1 (ENSMZEG00005008817)	ENSMZEG00005008794	xylt2 (ENSMZEG00005008761)	ENSMZEG00005008740	RECQL5 (ENSMZEG00005008718)
P. nyererei	MODERN SPECIES	556													dhrs7b (ENSPNYG00000016716)	CRAMP1 (ENSPNYG00000016751) #20	jpt2 (ENSPNYG00000016790) #21	mapk8ip3 (ENSPNYG00000016808) #22	nme3 (ENSPNYG00000016887) #23	mrps34 (ENSPNYG00000016920) #24	spsb3a (ENSPNYG00000016936) #26	ATP6V0C (ENSPNYG00000016960)	ypel3 (ENSPNYG00000016971)	gdpd3a (ENSPNYG00000016991)	mapk3 (ENSPNYG00000017030)	nudt9 (ENSPNYG00000017075)	ENSPNYG00000017099	rabep2 (ENSPNYG00000017160)	atp2a1 (ENSPNYG00000017239)	NHERF1 (ENSPNYG00000017295)	ENSPNYG00000017308	xylt2 (ENSPNYG00000017326)	ENSPNYG00000017361
Lyretail cichlid	MODERN SPECIES	493																mapk8ip3 (ENSNBRG00000002698) #22	nme3 (ENSNBRG00000002662) #23	mrps34 (ENSNBRG00000002645) #24	spsb3a (ENSNBRG00000002608) #26	ATP6V0C (ENSNBRG00000002597)	ypel3 (ENSNBRG00000002588)	gdpd3a (ENSNBRG00000002553)	rabep2 (ENSNBRG00000002478)	mapk3 (ENSNBRG00000002431)	nudt9 (ENSNBRG00000002323)	ENSNBRG00000002220	atp2a1 (ENSNBRG00000002110)	NHERF1 (ENSNBRG00000002084)	ENSNBRG00000002011	xylt2 (ENSNBRG00000001966)	ENSNBRG00000001920
Midas cichlid	MODERN SPECIES	1292	ENSACIG00000007954	slc17a7a (ENSACIG00000007925)	zgc:55558 (ENSACIG00000007608)	pold1 (ENSACIG00000007546)	gys1 (ENSACIG00000007513)	aspdh (ENSACIG00000007446)	tmem86b (ENSACIG00000007432)	hspbp1 (ENSACIG00000007409)	tufm (ENSACIG00000007388)	KCNJ18 (ENSACIG00000007381)	natd1 (ENSACIG00000007373)	tmem11 (ENSACIG00000007366)	dhrs7b (ENSACIG00000007351)	CRAMP1 (ENSACIG00000007303) #20	jpt2 (ENSACIG00000007288) #21	mapk8ip3 (ENSACIG00000007219) #22	nme3 (ENSACIG00000007201) #23	ENSACIG00000007185	mrps34 (ENSACIG00000007180) #24	spsb3a (ENSACIG00000007162) #26	ATP6V0C (ENSACIG00000007016)	ypel3 (ENSACIG00000006927)	gdpd3a (ENSACIG00000006901)	mapk3 (ENSACIG00000006876)	nudt9 (ENSACIG00000006759)	ENSACIG00000006696	rabep2 (ENSACIG00000006667)	atp2a1 (ENSACIG00000006617)	NHERF1 (ENSACIG00000006551)	ENSACIG00000006526	xylt2 (ENSACIG00000006491)
Pomacentridae	ANCESTRAL SPECIES	47	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00500000045140.a.a	ENSGT00530000063743.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Pomacentridae_A	ANCESTRAL SPECIES	54	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00530000063743.a	ENSGT00500000045140.a.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Amphiprion	ANCESTRAL SPECIES	69	ENSGT00940000159110.a	ENSGT00950000182857.a.b.eb	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452.i	ENSGT00390000007101.d.a.u	ENSGT00940000153909.a	ENSGT00940000156748	ENSGT01030000234586.A.a.a.b	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a	ENSGT00940000161514	ENSGT00940000160759	ENSGT00940000160691	ENSGT00390000017405	ENSGT00530000063743.a	ENSGT00500000045140.a.a	ENSGT00940000164922.g.a	ENSGT00950000182849.B.c.b.a	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00940000163587.a.b.a.c.a
Clown anemonefish	MODERN SPECIES	3666		ENSAOCG00000015152	zgc:55558 (ENSAOCG00000001915)	pold1 (ENSAOCG00000015084)	gys1 (ENSAOCG00000014981)	aspdh (ENSAOCG00000001036)	tmem86b (ENSAOCG00000002358)	hspbp1 (ENSAOCG00000001034)	tufm (ENSAOCG00000001032)	ENSAOCG00000001016	natd1 (ENSAOCG00000001014)	tmem11 (ENSAOCG00000014866)	dhrs7b (ENSAOCG00000014850)	CRAMP1 (ENSAOCG00000014823) #20	jpt2 (ENSAOCG00000014761) #21	mapk8ip3 (ENSAOCG00000014703) #22	nme3 (ENSAOCG00000014468) #23	mrps34 (ENSAOCG00000014456) #24	spsb3a (ENSAOCG00000014447) #26	ATP6V0C (ENSAOCG00000000936)	ypel3 (ENSAOCG00000014406)	gdpd3a (ENSAOCG00000014395)	mapk3 (ENSAOCG00000014369)	nudt9 (ENSAOCG00000014335)	rabep2 (ENSAOCG00000014319)	ENSAOCG00000014284	atp2a1 (ENSAOCG00000014250)	NHERF1 (ENSAOCG00000014141)	ENSAOCG00000014127	xylt2 (ENSAOCG00000014102)	ENSAOCG00000014074
Orange clownfish	MODERN SPECIES	5	slc17a7a (ENSAPEG00000016129)	ENSAPEG00000016022	zgc:55558 (ENSAPEG00000016011)	pold1 (ENSAPEG00000015926)	gys1 (ENSAPEG00000015845)	aspdh (ENSAPEG00000015804)	tmem86b (ENSAPEG00000015800)	hspbp1 (ENSAPEG00000015794)	tufm (ENSAPEG00000015751)	ENSAPEG00000015702	natd1 (ENSAPEG00000015685)	tmem11 (ENSAPEG00000015666)	dhrs7b (ENSAPEG00000015655)	CRAMP1 (ENSAPEG00000015527) #20	jpt2 (ENSAPEG00000015509) #21	mapk8ip3 (ENSAPEG00000015279) #22	nme3 (ENSAPEG00000015159) #23	mrps34 (ENSAPEG00000015149) #24	spsb3a (ENSAPEG00000015123) #26	ATP6V0C (ENSAPEG00000015108)	ypel3 (ENSAPEG00000015098)	gdpd3a (ENSAPEG00000015054)	mapk3 (ENSAPEG00000015004)	nudt9 (ENSAPEG00000014991)	rabep2 (ENSAPEG00000014940)	ENSAPEG00000014910	atp2a1 (ENSAPEG00000014827)	NHERF1 (ENSAPEG00000014808)	ENSAPEG00000014768	xylt2 (ENSAPEG00000014717)	ENSAPEG00000014692
Spiny chromis	MODERN SPECIES	778	ENSAPOG00000013028	slc17a7a (ENSAPOG00000013098)	zgc:55558 (ENSAPOG00000013106)	pold1 (ENSAPOG00000013225)	gys1 (ENSAPOG00000013295)	aspdh (ENSAPOG00000013320)	tmem86b (ENSAPOG00000000364)	hspbp1 (ENSAPOG00000013358)	tufm (ENSAPOG00000013385)	ENSAPOG00000013391	natd1 (ENSAPOG00000013417)	tmem11 (ENSAPOG00000013431)	dhrs7b (ENSAPOG00000013483)	CRAMP1 (ENSAPOG00000013559) #20	jpt2 (ENSAPOG00000013576) #21	mapk8ip3 (ENSAPOG00000000996) #22	nme3 (ENSAPOG00000013861) #23	mrps34 (ENSAPOG00000013871) #24	spsb3a (ENSAPOG00000013914) #26
Bicolor damselfish	MODERN SPECIES	279	ENSSPAG00000009612	slc17a7a (ENSSPAG00000009662)	zgc:55558 (ENSSPAG00000009689)	pold1 (ENSSPAG00000009720)	gys1 (ENSSPAG00000009815)	aspdh (ENSSPAG00000009868)	hspbp1 (ENSSPAG00000009901)	tmem86b (ENSSPAG00000009925)	tufm (ENSSPAG00000009936)	ENSSPAG00000009981	natd1 (ENSSPAG00000009988)	tmem11 (ENSSPAG00000009999)	dhrs7b (ENSSPAG00000010011)	CRAMP1 (ENSSPAG00000010052) #20	jpt2 (ENSSPAG00000010198) #21	mapk8ip3 (ENSSPAG00000010242) #22	nme3 (ENSSPAG00000010523) #23	mrps34 (ENSSPAG00000010529) #24	spsb3a (ENSSPAG00000010547) #26	ATP6V0C (ENSSPAG00000010562)	ypel3 (ENSSPAG00000010578)	gdpd3a (ENSSPAG00000010609)	mapk3 (ENSSPAG00000010656)	nudt9 (ENSSPAG00000010682)	ENSSPAG00000010697	rabep2 (ENSSPAG00000010734)	atp2a1 (ENSSPAG00000010793)	NHERF1 (ENSSPAG00000010949)	ENSSPAG00000010991	xylt2 (ENSSPAG00000011029)	ENSSPAG00000011077
Tiger tail seahorse	MODERN SPECIES	147	EP300 (ENSHCOG00000014245)	pold1 (ENSHCOG00000014290)	znhit1 (ENSHCOG00000014301)	gys1 (ENSHCOG00000014348)	aspdh (ENSHCOG00000014357)	tmem86b (ENSHCOG00000014359)	hspbp1 (ENSHCOG00000014379)	tufm (ENSHCOG00000014418)	ENSHCOG00000014453	ENSHCOG00000014468	natd1 (ENSHCOG00000014482)	tmem11 (ENSHCOG00000014500)	dhrs7b (ENSHCOG00000014515)	CRAMP1 (ENSHCOG00000014566) #20	jpt2 (ENSHCOG00000014579) #21	mapk8ip3 (ENSHCOG00000000406) #22	nme3 (ENSHCOG00000014644) #23	mrps34 (ENSHCOG00000014649) #24	spsb3a (ENSHCOG00000014663) #26	ATP6V0C (ENSHCOG00000014674)	ypel3 (ENSHCOG00000000409)	gdpd3a (ENSHCOG00000014735)	mapk3 (ENSHCOG00000014759)	nudt9 (ENSHCOG00000014765)	ENSHCOG00000014773	rabep2 (ENSHCOG00000014791)	atp2a1 (ENSHCOG00000014828)	NHERF1 (ENSHCOG00000014832)	ENSHCOG00000014859	xylt2 (ENSHCOG00000014899)	ENSHCOG00000014910
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005010854	slc17a7a (ENSMMDG00005010859)	zgc:55558 (ENSMMDG00005010862)	pold1 (ENSMMDG00005010865)	gys1 (ENSMMDG00005010887)	aspdh (ENSMMDG00005011110)	tmem86b (ENSMMDG00005011114)	hspbp1 (ENSMMDG00005011117)	tufm (ENSMMDG00005011123)	KCNJ18 (ENSMMDG00005011153)	natd1 (ENSMMDG00005011154)	tmem11 (ENSMMDG00005011157)	dhrs7b (ENSMMDG00005011160)	CRAMP1 (ENSMMDG00005011165) #20	jpt2 (ENSMMDG00005011178) #21	mapk8ip3 (ENSMMDG00005011182) #22	ENSMMDG00005011186	nme3 (ENSMMDG00005011187) #23	mrps34 (ENSMMDG00005011191) #24	spsb3a (ENSMMDG00005011193) #26	ATP6V0C (ENSMMDG00005011195)	ypel3 (ENSMMDG00005011198)	gdpd3a (ENSMMDG00005011203)	mapk3 (ENSMMDG00005011250)	nudt9 (ENSMMDG00005012631)	ENSMMDG00005012632	rabep2 (ENSMMDG00005012636)	atp2a1 (ENSMMDG00005012645)	NHERF1 (ENSMMDG00005012673)	ENSMMDG00005012719	xylt2 (ENSMMDG00005012720)
Cod	MODERN SPECIES	11	ENSGMOG00000002829	ENSGMOG00000032942	ENSGMOG00000032444	ENSGMOG00000023058	ENSGMOG00000022179	ENSGMOG00000023244	ENSGMOG00000033887	ENSGMOG00000037144	ENSGMOG00000027126	ENSGMOG00000003296	ENSGMOG00000003322	tmem11 (ENSGMOG00000003334)	ENSGMOG00000003340	ENSGMOG00000030019 #20	jpt2 (ENSGMOG00000036879) #21	mapk8ip3 (ENSGMOG00000003414) #22	nme3 (ENSGMOG00000003474) #23	mrps34 (ENSGMOG00000028328) #24	spsb3a (ENSGMOG00000017939) #26	ENSGMOG00000028725	ENSGMOG00000022455	ENSGMOG00000002179	ENSGMOG00000036855	ENSGMOG00000002235	ENSGMOG00000003492	ENSGMOG00000003514	ENSGMOG00000009830	ENSGMOG00000009835	cdr2l (ENSGMOG00000023890)	ENSGMOG00000025476	ENSGMOG00000029031
Protacanthopterygii	ANCESTRAL SPECIES	169											ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.ob.a.a.b	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b	ENSGT00940000160492	ENSGT00940000159252.b.b	ENSGT00940000164396
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	328											ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00550000074873.ob.a.b.a.b	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e
Salmoninae_a	ANCESTRAL SPECIES	141											ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000158268.b.b	ENSGT00940000160972.b	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000154700.e	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a	ENSGT00390000003337.e #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
River trout	MODERN SPECIES	25	rras (ENSSTUG00000023069)	ENSSTUG00000023056	AP2A1 (ENSSTUG00000022231)	prmt1 (ENSSTUG00000021688)	ENSSTUG00000021474	lin7b (ENSSTUG00000021278)	ENSSTUG00000021245	ENSSTUG00000021239	parp14rs1 (ENSSTUG00000021154)	ENSSTUG00000021144	dhrs7b (ENSSTUG00000021126)	tmem11 (ENSSTUG00000021114)	natd1 (ENSSTUG00000021110)	CRAMP1 (ENSSTUG00000021095) #20	jpt2 (ENSSTUG00000021077) #21	mapk8ip3 (ENSSTUG00000020567) #22	nme3 (ENSSTUG00000020510) #23	mrps34 (ENSSTUG00000020498) #24	spsb3a (ENSSTUG00000020487) #26	ATP6V0C (ENSSTUG00000020476)	nog2 (ENSSTUG00000020464)	amdhd2 (ENSSTUG00000020435)	GPRC5C (ENSSTUG00000020419)	ccdc137 (ENSSTUG00000020409)	nme4 (ENSSTUG00000020398)	xpo6 (ENSSTUG00000020221)	antkmt (ENSSTUG00000020193)	hirip3 (ENSSTUG00000020170)	kctd13 (ENSSTUG00000020152)	ENSSTUG00000020144	SEZ6L2 (ENSSTUG00000019961)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000065016	prmt1 (ENSSSAG00000000712)	ENSSSAG00000000496	ENSSSAG00000000534	ENSSSAG00000000406	ENSSSAG00000121130	ENSSSAG00000000320	ENSSSAG00000000286	dhrs7b (ENSSSAG00000000277)	ENSSSAG00000118877	ENSSSAG00000075095	ENSSSAG00000085847 #20	jpt2 (ENSSSAG00000002627) #21	ENSSSAG00000088647	ENSSSAG00000098109	mapk8ip3 (ENSSSAG00000002339) #22	nme3 (ENSSSAG00000002150) #23	mrps34 (ENSSSAG00000002136) #24	ENSSSAG00000096951	ENSSSAG00000100412	spsb3a (ENSSSAG00000002130) #26	ENSSSAG00000102967	ENSSSAG00000035106	ENSSSAG00000002113	ENSSSAG00000002099	ENSSSAG00000002078	ENSSSAG00000117067	ccdc137 (ENSSSAG00000002067)	nme4 (ENSSSAG00000002048)	ENSSSAG00000001798	fam173a (ENSSSAG00000001756)
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000158268.b.b	ENSGT00940000160972.b	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000154700.e	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	49	ENSGT00940000158268.b.b	ENSGT00940000160972.b	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000154700.e	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a #20	ENSGT00390000007652.d #21	ENSGT00940000153496.a.a.q #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.d #26	ENSGT00550000074873.ob.a.a.b.a	ENSGT00390000006009.a.a.b.d	ENSGT00390000012605	ENSGT00950000182961.a.a.d	ENSGT00390000004169	ENSGT00940000160286.hb	ENSGT00390000002810.k	ENSGT00390000014771.b.a	ENSGT00390000014062	ENSGT00950000183143.c.b.n	ENSGT00940000160492.e	ENSGT00940000159252.b.b.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2924	ENSOTSG00005030118	znf219 (ENSOTSG00005030116)	ENSOTSG00005030115	ENSOTSG00005030114	ENSOTSG00005030113	lin7b (ENSOTSG00005029969)	ENSOTSG00005029967	ENSOTSG00005029966	ENSOTSG00005029965	parp14rs1 (ENSOTSG00005029961)	natd1 (ENSOTSG00005029958)	tmem11 (ENSOTSG00005029957)	dhrs7b (ENSOTSG00005029956)	CRAMP1 (ENSOTSG00005029955) #20	jpt2 (ENSOTSG00005029954) #21	mapk8ip3 (ENSOTSG00005029643) #22	nme3 (ENSOTSG00005029637) #23	mrps34 (ENSOTSG00005029636) #24	spsb3a (ENSOTSG00005029635) #26	ATP6V0C (ENSOTSG00005029627)	nog2 (ENSOTSG00005029626)	amdhd2 (ENSOTSG00005029597)	GPRC5C (ENSOTSG00005029595)	ccdc137 (ENSOTSG00005029593)	nme4 (ENSOTSG00005029591)	xpo6 (ENSOTSG00005028226)	antkmt (ENSOTSG00005028225)	hirip3 (ENSOTSG00005028224)	kctd13 (ENSOTSG00005028222)	SEZ6L2 (ENSOTSG00005028219)	ASPHD2 (ENSOTSG00005028215)
Chinook salmon	MODERN SPECIES	33	nlk1 (ENSOTSG00005032154)	TLCD3B (ENSOTSG00005032153)	mvp (ENSOTSG00005031551)	ENSOTSG00005031546	ENSOTSG00005031545	ENSOTSG00005031542	DOC2A (ENSOTSG00005031541)	ENSOTSG00005031538	ENSOTSG00005031537	parp14rs1 (ENSOTSG00005031534)	natd1 (ENSOTSG00005031531)	tmem11 (ENSOTSG00005031529)	dhrs7b (ENSOTSG00005031528)	CRAMP1 (ENSOTSG00005031526) #20	jpt2 (ENSOTSG00005031524) #21	mapk8ip3 (ENSOTSG00005030621) #22	nme3 (ENSOTSG00005030608) #23	mrps34 (ENSOTSG00005030606) #24	spsb3a (ENSOTSG00005030605) #26	ATP6V0C (ENSOTSG00005034295)	nog2 (ENSOTSG00005034294)	amdhd2 (ENSOTSG00005034259)	GPRC5C (ENSOTSG00005034251)	ccdc137 (ENSOTSG00005034247)	nme4 (ENSOTSG00005034244)	xpo6 (ENSOTSG00005033869)	antkmt (ENSOTSG00005033867)	hirip3 (ENSOTSG00005033866)	kctd13 (ENSOTSG00005033865)	SEZ6L2 (ENSOTSG00005033807)	ASPHD2 (ENSOTSG00005033795)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005031078	AP2A1 (ENSOKIG00005030654)	prmt1 (ENSOKIG00005027306)	ENSOKIG00005027124	ENSOKIG00005027113	ENSOKIG00005027084	lin7b (ENSOKIG00005026987)	ENSOKIG00005026943	ENSOKIG00005026931	parp14rs1 (ENSOKIG00005026786)	natd1 (ENSOKIG00005026764)	tmem11 (ENSOKIG00005026756)	dhrs7b (ENSOKIG00005026739)	CRAMP1 (ENSOKIG00005026710) #20	jpt2 (ENSOKIG00005026684) #21	mapk8ip3 (ENSOKIG00005026395) #22	nme3 (ENSOKIG00005026313) #23	mrps34 (ENSOKIG00005026293) #24	spsb3a (ENSOKIG00005026283) #26	ENSOKIG00005026273	ATP6V0C (ENSOKIG00005026233)	ENSOKIG00005026218	amdhd2 (ENSOKIG00005012381)	GPRC5C (ENSOKIG00005012368)	ccdc137 (ENSOKIG00005012364)	nme4 (ENSOKIG00005012349)	xpo6 (ENSOKIG00005011283)	antkmt (ENSOKIG00005011245)	hirip3 (ENSOKIG00005011236)	ENSOKIG00005011231	kctd13 (ENSOKIG00005011221)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000027569	ENSOMYG00000076201	ENSOMYG00000026079	prmt1 (ENSOMYG00000051801)	ENSOMYG00000023784	ENSOMYG00000023614	ENSOMYG00000023495	ENSOMYG00000053305	ENSOMYG00000023479	ENSOMYG00000023318	ENSOMYG00000023135	tmem11 (ENSOMYG00000060635)	ENSOMYG00000023118	ENSOMYG00000023101 #20	jpt2 (ENSOMYG00000023087) #21	mapk8ip3 (ENSOMYG00000019947) #22	nme3 (ENSOMYG00000019726) #23	mrps34 (ENSOMYG00000019712) #24	spsb3a (ENSOMYG00000019705) #26	ENSOMYG00000019687	ENSOMYG00000019676	ENSOMYG00000019633	ENSOMYG00000019555	ENSOMYG00000019548	nme4 (ENSOMYG00000019542)	ENSOMYG00000018956	antkmt (ENSOMYG00000018851)	hirip3 (ENSOMYG00000018846)	ENSOMYG00000018839	ENSOMYG00000052203	ENSOMYG00000018203
Huchen	MODERN SPECIES	807											natd1 (ENSHHUG00000046065)	tmem11 (ENSHHUG00000046061)	dhrs7b (ENSHHUG00000046054)	CRAMP1 (ENSHHUG00000046050) #20	jpt2 (ENSHHUG00000046044) #21	mapk8ip3 (ENSHHUG00000045754) #22	nme3 (ENSHHUG00000045743) #23	mrps34 (ENSHHUG00000045740) #24	spsb3a (ENSHHUG00000045739) #26	ATP6V0C (ENSHHUG00000045643)	nog2 (ENSHHUG00000045641)	amdhd2 (ENSHHUG00000045624)	GPRC5C (ENSHHUG00000045620)	ccdc137 (ENSHHUG00000045617)	nme4 (ENSHHUG00000045173)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	409	ENSGT01010000222360.D.a.h	ENSGT00390000015505	ENSGT00730000111459	ENSGT00950000183205.b.a.b.a.a.m	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	120	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b
Salmo	ANCESTRAL SPECIES	64	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.a
River trout	MODERN SPECIES	33	pax10 (ENSSTUG00000031563)	rcn3 (ENSSTUG00000031504)	ENSSTUG00000031441	PRR12 (ENSSTUG00000031372)	prrg2 (ENSSTUG00000031352)	ENSSTUG00000031349	rras (ENSSTUG00000031339)	ENSSTUG00000031326	AP2A1 (ENSSTUG00000030784)	prmt1 (ENSSTUG00000029625)	ENSSTUG00000029588	ENSSTUG00000029582	tmem11 (ENSSTUG00000029578)	CRAMP1 (ENSSTUG00000029545) #20	jpt2 (ENSSTUG00000029523) #21	mapk8ip3 (ENSSTUG00000029202) #22	spsb3a (ENSSTUG00000029182) #26	ATP6V0C (ENSSTUG00000029160)	ENSSTUG00000029153	xpo6 (ENSSTUG00000027955)	kctd13 (ENSSTUG00000027924)	SEZ6L2 (ENSSTUG00000027824)	ENSSTUG00000027813	ENSSTUG00000027796	ENSSTUG00000027742	dlx4a (ENSSTUG00000027729)	DLX3 (ENSSTUG00000027720)	PSMD11 (ENSSTUG00000027628)	cdk5r1a (ENSSTUG00000027621)	nsfa (ENSSTUG00000025460)	THRA (ENSSTUG00000025312)
Atlantic salmon	MODERN SPECIES	15	rcn3 (ENSSSAG00000072371)	ENSSSAG00000100366	ENSSSAG00000102493	ENSSSAG00000072339	prrg2 (ENSSSAG00000072333)	rras (ENSSSAG00000072324)	ENSSSAG00000072315	ENSSSAG00000001001	prmt1 (ENSSSAG00000061870)	ENSSSAG00000097370	ENSSSAG00000095953	ENSSSAG00000105245	tmem11 (ENSSSAG00000000270)	ENSSSAG00000061415 #20	jpt2 (ENSSSAG00000095240) #21	mapk8ip3 (ENSSSAG00000053437) #22	ENSSSAG00000114586 #26	ENSSSAG00000095306	ENSSSAG00000106267	ENSSSAG00000102969	ENSSSAG00000052647	ENSSSAG00000045889	ENSSSAG00000045730	HEBP2 (ENSSSAG00000045682)	ENSSSAG00000082098	ENSSSAG00000120584	ENSSSAG00000083996	ENSSSAG00000041588	ENSSSAG00000102800	ENSSSAG00000057762	ENSSSAG00000088009
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	409	ENSGT00390000015505	ENSGT00730000111459	ENSGT00950000183205.b.a.b.a.a.m	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	120	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.a #22	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.a
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000158837.g.b.b	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00940000160492.f	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.b	ENSGT00950000182818.A.o.a	ENSGT00940000164511.C.k.b.b	ENSGT00940000166981.e.a
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000069771	ENSOMYG00000062437	tmg2 (ENSOMYG00000046212)	rras (ENSOMYG00000050105)	ENSOMYG00000046218	ENSOMYG00000046268	prmt1 (ENSOMYG00000024072)	ENSOMYG00000046415	ENSOMYG00000071171	ENSOMYG00000074210	ENSOMYG00000046426	ENSOMYG00000046434	tmem11 (ENSOMYG00000046436)	ENSOMYG00000046444 #20	jpt2 (ENSOMYG00000046462) #21	mapk8ip3 (ENSOMYG00000046505) #22	ENSOMYG00000057237	ENSOMYG00000046560 #26	ENSOMYG00000046565	ENSOMYG00000046626	ENSOMYG00000046695	ENSOMYG00000046697	ENSOMYG00000046701	ENSOMYG00000046708	ENSOMYG00000051375	ENSOMYG00000053810	ENSOMYG00000063379	ENSOMYG00000046756	ENSOMYG00000046850	ENSOMYG00000053599	ENSOMYG00000046919
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00440000037417.B.a.e.a	ENSGT00940000158268.b.a	ENSGT00940000160972.a	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000154700.f	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000158837.g.b.b	ENSGT00390000006617.f	ENSGT00390000003337.f.b #20	ENSGT00390000007652.c #21	ENSGT00940000153496.a.a.r.b.a #22	ENSGT01030000234629.E.a.b.c #26	ENSGT00550000074873.ob.a.a.b.b	ENSGT00940000160492.f	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000064085.d.b	ENSGT00940000157917.a.a.b.b	ENSGT00940000162682.B.b	ENSGT00950000182818.A.o.a	ENSGT00940000164511.C.k.b.b	ENSGT00940000160609.f.e	ENSGT00940000166981.e.a
Chinook salmon	MODERN SPECIES		tspan4b (ENSOTSG00005007721)	pax10 (ENSOTSG00005007722)	ENSOTSG00005007724	ENSOTSG00005007726	PRR12 (ENSOTSG00005007728)	prrg2 (ENSOTSG00005007797)	rras (ENSOTSG00005007799)	ENSOTSG00005007801	AP2A1 (ENSOTSG00005007807)	prmt1 (ENSOTSG00005008317)	ENSOTSG00005009346	ENSOTSG00005009356	ENSOTSG00005009357	tmem11 (ENSOTSG00005009371)	CRAMP1 (ENSOTSG00005009373) #20	mapk8ip3 (ENSOTSG00005009375) #22	spsb3a (ENSOTSG00005009412) #26	ATP6V0C (ENSOTSG00005009413)	SEZ6L2 (ENSOTSG00005009418)	ENSOTSG00005009594	dlx4a (ENSOTSG00005009595)	DLX3 (ENSOTSG00005009596)	PSMD11 (ENSOTSG00005009598)	cdk5r1a (ENSOTSG00005009599)	nsfa (ENSOTSG00005009601)	THRA (ENSOTSG00005009816)	dusp3b (ENSOTSG00005010730)	prl2 (ENSOTSG00005010731)	ENSOTSG00005010733	tnnt1 (ENSOTSG00005010747)	syt5a (ENSOTSG00005010748)
Coho salmon	MODERN SPECIES	1	ENSOKIG00005025977	PRR12 (ENSOKIG00005026008)	prrg2 (ENSOKIG00005026133)	ENSOKIG00005026144	rras (ENSOKIG00005026149)	ENSOKIG00005026159	AP2A1 (ENSOKIG00005026192)	prmt1 (ENSOKIG00005026770)	ENSOKIG00005029316	ENSOKIG00005029333	ENSOKIG00005029359	tmem11 (ENSOKIG00005029724)	CRAMP1 (ENSOKIG00005029739) #20	jpt2 (ENSOKIG00005029781) #21	ENSOKIG00005029815	mapk8ip3 (ENSOKIG00005029868) #22	SPSB3 (ENSOKIG00005030546) #26	SEZ6L2 (ENSOKIG00005030576)	ENSOKIG00005030686	ENSOKIG00005030742	DLX3 (ENSOKIG00005030773)	PSMD11 (ENSOKIG00005030783)	CDK5R1 (ENSOKIG00005030823)	NSF (ENSOKIG00005030932)	THRA (ENSOKIG00005032167)	dusp3b (ENSOKIG00005032411)	ENSOKIG00005032418	ENSOKIG00005032442	ENSOKIG00005032481	ENSOKIG00005032824	ENSOKIG00005032994
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a.r.b.b #22
Coho salmon	MODERN SPECIES	960																ENSOKIG00005041224 #22
Huchen	MODERN SPECIES	9661																ENSHHUG00000007319 #22
Northern pike	MODERN SPECIES	10	ENSELUG00000031333	lin7b (ENSELUG00000005462)	ENSELUG00000005563	ENSELUG00000027172	ENSELUG00000025046	ENSELUG00000034636	ENSELUG00000009811	ENSELUG00000026231	parp14rs1 (ENSELUG00000009798)	ENSELUG00000009784	natd1 (ENSELUG00000009743)	tmem11 (ENSELUG00000009727)	dhrs7b (ENSELUG00000009719)	CRAMP1 (ENSELUG00000009700) #20	jpt2 (ENSELUG00000009677) #21	mapk8ip3 (ENSELUG00000009632) #22	nme3 (ENSELUG00000009505) #23	mrps34 (ENSELUG00000009475) #24	spsb3a (ENSELUG00000009455) #26	ATP6V0C (ENSELUG00000009437)	ENSELUG00000022963	ENSELUG00000033910	nog2 (ENSELUG00000009426)	amdhd2 (ENSELUG00000009397)	ENSELUG00000025997	CAPN15 (ENSELUG00000009318)	GPRC5C (ENSELUG00000009299)	ccdc137 (ENSELUG00000009272)	ENSELUG00000009242	nme4 (ENSELUG00000029985)	xpo6 (ENSELUG00000009159)
Otomorpha	ANCESTRAL SPECIES	50	ENSGT01090000259987.b.b.a.a.a.a	ENSGT00940000156059	ENSGT00950000182984.b.a.a.c.a	ENSGT01050000244842.a.b.b.b	ENSGT00940000157020.g.a	ENSGT00940000157579.a	ENSGT00940000154578.A.c.b.d	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.f	ENSGT01050000245142	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b
Clupeiformes	ANCESTRAL SPECIES	74	ENSGT01090000259987.b.b.a.a.a.a	ENSGT00940000156059	ENSGT00950000182984.b.a.a.c.a	ENSGT01050000244842.a.b.b.b	ENSGT00940000157020.g.a	ENSGT00940000157579.a	ENSGT00940000154578.A.c.b.d	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.a.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00940000158125.b	ENSGT00940000163157.b
Atlantic herring	MODERN SPECIES		mettl2a (ENSCHAG00000010946)	tlk2 (ENSCHAG00000011228)	MRC2 (ENSCHAG00000012256)	rnd2 (ENSCHAG00000012824)	vat1 (ENSCHAG00000012854)	ENSCHAG00000012869	ENSCHAG00000012876	phb (ENSCHAG00000012888)	ZNF652 (ENSCHAG00000012922)	phospho1 (ENSCHAG00000012934)	natd1 (ENSCHAG00000012957)	tmem11 (ENSCHAG00000013010)	dhrs7b (ENSCHAG00000013031)	CRAMP1 (ENSCHAG00000013039) #20	jpt2 (ENSCHAG00000013475) #21	mapk8ip3 (ENSCHAG00000013540) #22	nme3 (ENSCHAG00000016140) #23	mrps34 (ENSCHAG00000016205) #24	spsb3a (ENSCHAG00000016213) #26	atp6v0ca (ENSCHAG00000016256)	lasp1 (ENSCHAG00000016331)	arl5c (ENSCHAG00000016343)	cacnb1 (ENSCHAG00000016427)	RPL19 (ENSCHAG00000016644)	ENSCHAG00000016658	GJC1 (ENSCHAG00000016671)	eftud2 (ENSCHAG00000016684)	gh1 (ENSCHAG00000016971)	ENSCHAG00000017265	SCN4A (ENSCHAG00000017312)	ENSCHAG00000018663
Denticle herring	MODERN SPECIES	17	gpd1a (ENSDCDG00000029865)	si:ch73-141c7.1 (ENSDCDG00000029871)	ENSDCDG00000029903	odad4 (ENSDCDG00000029908)	dnajc7 (ENSDCDG00000029925)	nkiras2 (ENSDCDG00000030166)	vat1 (ENSDCDG00000030171)	phb (ENSDCDG00000030174)	ZNF652 (ENSDCDG00000030177)	phospho1 (ENSDCDG00000030180)	natd1 (ENSDCDG00000030184)	tmem11 (ENSDCDG00000030186)	dhrs7b (ENSDCDG00000030190)	CRAMP1 (ENSDCDG00000030204) #20	jpt2 (ENSDCDG00000030271) #21	mapk8ip3 (ENSDCDG00000030384) #22	odad4 (ENSDCDG00000032542)	dnajc7 (ENSDCDG00000032545)	syt9b (ENSDCDG00000032546)	PPFIBP2 (ENSDCDG00000032571)	sb:cb470 (ENSDCDG00000032760)	cyb5r2 (ENSDCDG00000032761)	PLEKHA5 (ENSDCDG00000032778)	ENSDCDG00000032812	ENSDCDG00000032814	ENSDCDG00000032817	RELN (ENSDCDG00000032823)	LHFPL3 (ENSDCDG00000032833)	ENSDCDG00000032838	ENSDCDG00000032867	tp53i11b (ENSDCDG00000032869)
Otophysi	ANCESTRAL SPECIES	11								ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.f	ENSGT01050000245142	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b
Characiphysae	ANCESTRAL SPECIES	11	ENSGT00940000168169	ENSGT00390000012014.B	ENSGT00950000183184.b.b	ENSGT00940000160724	ENSGT00940000157015.j	ENSGT00940000160612	ENSGT00940000158410.g.a.a	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b.d	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.f	ENSGT01050000245142	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b
Channel catfish	MODERN SPECIES	11	cq072 (ENSIPUG00000024188)	TCAP (ENSIPUG00000024186)	Syngr1 (ENSIPUG00000024185)	FAM171A2 (ENSIPUG00000024184)	ITGA2B (ENSIPUG00000023401)	CRHR1 (ENSIPUG00000023385)	adcy10 (ENSIPUG00000023367)	phb (ENSIPUG00000023355)	Znf652 (ENSIPUG00000023347)	phospho1 (ENSIPUG00000023338)	natd1 (ENSIPUG00000023335)	tmem11 (ENSIPUG00000023333)	dhrs7b (ENSIPUG00000023327)	CRAMP1 (ENSIPUG00000023314) #20	jpt2 (ENSIPUG00000023303) #21	mapk8ip3 (ENSIPUG00000023279) #22	nme3 (ENSIPUG00000023274) #23	MRPS34 (ENSIPUG00000023268) #24	spsb3a (ENSIPUG00000023254) #26	atp6v0ca (ENSIPUG00000023248)	ENSIPUG00000023247	lasp1 (ENSIPUG00000023239)	arl5c (ENSIPUG00000023232)	cacnb1 (ENSIPUG00000023224)	ENSIPUG00000023221	rpl19 (ENSIPUG00000023215)	GJC1 (ENSIPUG00000023213)	Eftud2 (ENSIPUG00000023182)	ENSIPUG00000023179	ENSIPUG00000023169	ENSIPUG00000023168
Characiphysae_b	ANCESTRAL SPECIES	30	ENSGT00940000168169	ENSGT00390000012014.B	ENSGT00950000183184.b.b	ENSGT00940000160724	ENSGT00940000157015.j	ENSGT00940000160612	ENSGT00940000158410.g.a.a	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b.d	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00940000158125.b
Characoidei	ANCESTRAL SPECIES	25	ENSGT00940000168169	ENSGT00390000012014.B	ENSGT00950000183184.b.b	ENSGT00940000160724	ENSGT00940000157015.j	ENSGT00940000160612	ENSGT00940000158410.g.a.a	ENSGT00950000183070.a.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b.d	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT00940000158125.b
Red-bellied piranha	MODERN SPECIES	12	ENSPNAG00000013757	tcap (ENSPNAG00000013730)	syngr1a (ENSPNAG00000013720)	FAM171A2 (ENSPNAG00000002894)	itga2b (ENSPNAG00000002886)	ENSPNAG00000013507	CRHR1 (ENSPNAG00000012977)	phb (ENSPNAG00000012951)	ZNF652 (ENSPNAG00000012933)	phospho1 (ENSPNAG00000012917)	natd1 (ENSPNAG00000012898)	tmem11 (ENSPNAG00000012896)	dhrs7b (ENSPNAG00000012890)	CRAMP1 (ENSPNAG00000012883) #20	jpt2 (ENSPNAG00000012798) #21	mapk8ip3 (ENSPNAG00000002393) #22	nme3 (ENSPNAG00000012688) #23	mrps34 (ENSPNAG00000012661) #24	spsb3a (ENSPNAG00000012656) #26	atp6v0ca (ENSPNAG00000012641)	ENSPNAG00000012627	lasp1 (ENSPNAG00000012620)	arl5c (ENSPNAG00000002310)	cacnb1 (ENSPNAG00000012580)	rpl19 (ENSPNAG00000002294)	ENSPNAG00000012530	GJC1 (ENSPNAG00000012502)	eftud2 (ENSPNAG00000012490)	ENSPNAG00000002224	ENSPNAG00000012357	eps8l1a (ENSPNAG00000012317)
Mexicana tetra	MODERN SPECIES	11	ENSAMXG00000029723	fgf21 (ENSAMXG00000040056)	ENSAMXG00000014623	ENSAMXG00000039277	ENSAMXG00000036029	ENSAMXG00000041690	ENSAMXG00000039703	phb (ENSAMXG00000036224)	ZNF652 (ENSAMXG00000000691)	phospho1 (ENSAMXG00000025400)	natd1 (ENSAMXG00000043889)	tmem11 (ENSAMXG00000035004)	dhrs7b (ENSAMXG00000034515)	CRAMP1 (ENSAMXG00000000638) #20	jpt2 (ENSAMXG00000038798) #21	mapk8ip3 (ENSAMXG00000032278) #22	nme3 (ENSAMXG00000043728) #23	nme3 (ENSAMXG00000037698) #23	mrps34 (ENSAMXG00000000602) #24	spsb3a (ENSAMXG00000035409) #26	atp6v0ca (ENSAMXG00000032350)	lasp1 (ENSAMXG00000040421)	arl5c (ENSAMXG00000031771)	cacnb1 (ENSAMXG00000031925)	rpl19 (ENSAMXG00000043666)	ENSAMXG00000038712	GJC1 (ENSAMXG00000033049)	eftud2 (ENSAMXG00000000568)	ENSAMXG00000025399	ENSAMXG00000041549	eps8l1a (ENSAMXG00000000556)
Electric eel	MODERN SPECIES	225								phb (ENSEEEG00000015951)	ZNF652 (ENSEEEG00000015945)	phospho1 (ENSEEEG00000015942)	natd1 (ENSEEEG00000015941)	tmem11 (ENSEEEG00000015939)	dhrs7b (ENSEEEG00000015936)	CRAMP1 (ENSEEEG00000015931) #20	jpt2 (ENSEEEG00000015927) #21	mapk8ip3 (ENSEEEG00000015925) #22	nme3 (ENSEEEG00000015920) #23	mrps34 (ENSEEEG00000015917) #24	spsb3a (ENSEEEG00000015916) #26	atp6v0ca (ENSEEEG00000015890)	lasp1 (ENSEEEG00000015887)	arl5c (ENSEEEG00000015883)	cacnb1 (ENSEEEG00000015875)	ENSEEEG00000015873	ENSEEEG00000015872	GJC1 (ENSEEEG00000015871)	eftud2 (ENSEEEG00000015679)	ENSEEEG00000015665	ENSEEEG00000015664	ccdc43 (ENSEEEG00000015663)	ENSEEEG00000015662
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00530000064242.a	ENSGT00940000159141.j.a	ENSGT00940000154308.A.a.a.a	ENSGT00990000213837	ENSGT00940000161725.h	ENSGT00940000161103.a	ENSGT00390000008969	ENSGT00950000183070.a.b.b	ENSGT00940000157416	ENSGT00390000007741.a.p	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00390000003337 #20	ENSGT00390000007652 #21	ENSGT00940000153496.a.a #22	ENSGT00940000161283 #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b #26	ENSGT00550000074873.nb.b	ENSGT00980000198615	ENSGT00940000154775.c.a.a.b	ENSGT00940000167269	ENSGT00950000182837.a.b.b	ENSGT00390000012628.k.e.b	ENSGT01030000234535.A	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT00940000155685	ENSGT01030000234586.A.a.a.b	ENSGT00940000155286.m.b	ENSGT01090000260189.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	24	ENSGT00390000007119.a	ENSGT00390000015229.cb	ENSGT00530000064242.a.d	ENSGT00940000159141.j.a.a	ENSGT00940000161103.a.d	ENSGT00390000008969.l	ENSGT00950000183070.a.b.b.b	ENSGT00940000157416.e	ENSGT00390000007741.a.p.d	ENSGT00390000014840.a.c.b	ENSGT00390000014840.a.c.a	ENSGT00390000006617.c.a	ENSGT00940000158171.g	ENSGT00390000003337.h #20	ENSGT00390000007652.f #21	ENSGT00940000153496.a.a.s #22	ENSGT00940000161283.h #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.f #26	ENSGT00550000074873.nb.b.b.b	ENSGT00940000154775.c.a.a.b.d	ENSGT00940000167269.d	ENSGT00950000182837.a.b.b.e	ENSGT00390000012628.k.e.b.b	ENSGT01030000234535.A.g.b	ENSGT01090000260005.a.a.a.b.a.a.b.b.d	ENSGT00940000155685.q	ENSGT01030000234586.A.a.a.b.i.a	ENSGT00940000155286.m.b.b	ENSGT01090000260189.b	ENSGT00940000158125.b.h
Goldfish	MODERN SPECIES	20	DOC2A (ENSCARG00000024127)	ENSCARG00000024472	ENSCARG00000024477	zgc:66474 (ENSCARG00000024483)	ENSCARG00000024488	ENSCARG00000024495	mvp (ENSCARG00000024519)	phb (ENSCARG00000024622)	ZNF652 (ENSCARG00000024640)	phospho1 (ENSCARG00000024658)	natd1 (ENSCARG00000024663)	tmem11 (ENSCARG00000024668)	dhrs7b (ENSCARG00000024675)	CRAMP1 (ENSCARG00000024690) #20	jpt2 (ENSCARG00000024924) #21	mapk8ip3 (ENSCARG00000025045) #22	nme3 (ENSCARG00000029401) #23	mrps34 (ENSCARG00000029434) #24	spsb3a (ENSCARG00000029446) #26	atp6v0ca (ENSCARG00000029480)	lasp1 (ENSCARG00000029508)	arl5c (ENSCARG00000029532)	cacnb1 (ENSCARG00000029661)	rpl19 (ENSCARG00000031862)	ENSCARG00000031871	GJC1 (ENSCARG00000031874)	ENSCARG00000031881	ENSCARG00000031890	eps8l1a (ENSCARG00000031906)	ENSCARG00000031960	slc17a7a (ENSCARG00000032023)
Cyprininae_a	ANCESTRAL SPECIES	12	ENSGT00940000159141.j.a.a	ENSGT00940000154308.A.a.a.a	ENSGT01100000263491.a.b.b.c.a.a.b	ENSGT00940000161103.a.d	ENSGT00390000008969.l	ENSGT00950000183070.a.b.b.b	ENSGT00940000157416.e	ENSGT00390000007741.a.p.d	ENSGT00390000014840.a.c.a	ENSGT00390000006617.c.a	ENSGT00390000014840.a.c.b	ENSGT00390000006617.d	ENSGT00940000158171.g	ENSGT00390000003337.h #20	ENSGT00390000007652.f #21	ENSGT00940000153496.a.a.s #22	ENSGT00940000161283.h #23	ENSGT01030000234629.E.a.b.e #26	ENSGT00550000074873.nb.b.b.a	ENSGT00940000154775.c.a.a.b.c	ENSGT00940000167269.c	ENSGT00950000182837.a.b.b.f	ENSGT00390000012628.k.e.b.a	ENSGT01030000234535.A.g.a	ENSGT01090000260005.a.a.a.b.a.a.b.b.c	ENSGT00940000155685.r	ENSGT01030000234586.A.a.a.b.j	ENSGT01030000234586.A.a.a.b.i.b	ENSGT00940000155286.m.b.a	ENSGT01090000260189.b	ENSGT00940000158125.b.g
Common carp reference	MODERN SPECIES	1	nupr1b (ENSCCRG00000024365)	ENSCCRG00000063618	ENSCCRG00000064469	zgc:66474 (ENSCCRG00000071865)	ENSCCRG00000035149	ENSCCRG00000035170	mvp (ENSCCRG00000035425)	phb (ENSCCRG00000075098)	ENSCCRG00000059749	phospho1 (ENSCCRG00000068879)	natd1 (ENSCCRG00000077389)	tmem11 (ENSCCRG00000080658)	dhrs7b (ENSCCRG00000027563)	ENSCCRG00000051559 #20	jpt2 (ENSCCRG00000035183) #21	mapk8ip3 (ENSCCRG00000034016) #22	nme3 (ENSCCRG00000070457) #23	spsb3a (ENSCCRG00000059803) #26	atp6v0ca (ENSCCRG00000075293)	lasp1 (ENSCCRG00000054083)	ENSCCRG00000034218	arl5c (ENSCCRG00000076388)	cacnb1 (ENSCCRG00000034220)	rpl19 (ENSCCRG00000034203)	ENSCCRG00000041024	ENSCCRG00000069271	eftud2 (ENSCCRG00000054480)	ENSCCRG00000066902	ENSCCRG00000070610	ENSCCRG00000000120	eps8l1a (ENSCCRG00000000171)
Golden-line barbel	MODERN SPECIES	26	spns1 (ENSSGRG00000031309)	sgf29 (ENSSGRG00000031354)	nupr1b (ENSSGRG00000031362)	DOC2A (ENSSGRG00000031364)	ENSSGRG00000031365	ENSSGRG00000031369	ENSSGRG00000031370	ENSSGRG00000031372	mvp (ENSSGRG00000031376)	ENSSGRG00000031424	ENSSGRG00000031425	natd1 (ENSSGRG00000031426)	tmem11 (ENSSGRG00000031427)	dhrs7b (ENSSGRG00000031428)	CRAMP1 (ENSSGRG00000031433) #20	mapk8ip3 (ENSSGRG00000031474) #22	nme3 (ENSSGRG00000033555) #23	spsb3a (ENSSGRG00000033558) #26	atp6v0ca (ENSSGRG00000033559)	lasp1 (ENSSGRG00000033562)	arl5c (ENSSGRG00000033563)	cacnb1 (ENSSGRG00000033576)	rpl19 (ENSSGRG00000033711)	ENSSGRG00000033888	ENSSGRG00000033890	GJC1 (ENSSGRG00000033891)	eftud2 (ENSSGRG00000033895)	ENSSGRG00000034578	ENSSGRG00000034579	eps8l1a (ENSSGRG00000034580)	ENSSGRG00000034589
Cyprininae	ANCESTRAL SPECIES	901												ENSGT00390000006617.c.b	ENSGT00940000158171.h	ENSGT00390000003337.g #20	ENSGT00390000007652.e #21	ENSGT00940000153496.a.a.t #22	ENSGT00940000161283.g #23
Goldfish	MODERN SPECIES	22	sgf29 (ENSCARG00000017126)	nupr1b (ENSCARG00000017117)	DOC2A (ENSCARG00000017058)	ENSCARG00000017027	ENSCARG00000017019	ENSCARG00000017008	mvp (ENSCARG00000016682)	phb (ENSCARG00000016637)	ENSCARG00000016623	phospho1 (ENSCARG00000016616)	natd1 (ENSCARG00000016601)	tmem11 (ENSCARG00000016591)	dhrs7b (ENSCARG00000016554)	CRAMP1 (ENSCARG00000016195) #20	jpt2 (ENSCARG00000016162) #21	mapk8ip3 (ENSCARG00000011560) #22	nme3 (ENSCARG00000011347) #23	spsb3a (ENSCARG00000011332) #26	atp6v0ca (ENSCARG00000011279)	lasp1 (ENSCARG00000011253)	arl5c (ENSCARG00000011235)	cacnb1 (ENSCARG00000008976)	rpl19 (ENSCARG00000008872)	ENSCARG00000008865	GJC1 (ENSCARG00000008859)	eftud2 (ENSCARG00000008689)	ENSCARG00000008676	ENSCARG00000008666	eps8l1a (ENSCARG00000008623)	slc17a7a (ENSCARG00000008524)	zgc:55558 (ENSCARG00000008505)
Cyprininae_a	ANCESTRAL SPECIES	113	ENSGT00390000015229.bb	ENSGT00530000064242.a.c	ENSGT00940000159141.j.a.b	ENSGT01100000263505.b.b.a.a.a.b	ENSGT00940000161725.h.a	ENSGT01100000263533.a	ENSGT00940000161103.a.c	ENSGT00390000008969.k	ENSGT00950000183070.a.b.b.a	ENSGT00940000157416.f	ENSGT00390000007741.a.p.c	ENSGT00390000006617.c.b	ENSGT00940000158171.h	ENSGT00390000003337.g #20	ENSGT00390000007652.e #21	ENSGT00940000153496.a.a.t #22	ENSGT00940000161283.g #23	ENSGT00390000008964 #24	ENSGT01030000234629.E.a.b.f #26	ENSGT00550000074873.nb.b.a	ENSGT00940000154775.c.a.a.b.d	ENSGT00940000167269.d	ENSGT00950000182837.a.b.b.e	ENSGT00390000012628.k.e.b.b	ENSGT01030000234535.A.g.b	ENSGT01090000260005.a.a.a.b.a.a.b.b.d	ENSGT00940000155685.q	ENSGT01030000234586.A.a.a.b.i.a	ENSGT00940000155286.m.b.b	ENSGT00940000158125.b.h	ENSGT00940000163157.b.c
Common carp reference	MODERN SPECIES	3	nupr1b (ENSCCRG00000063606)	sgf29 (ENSCCRG00000074953)	ENSCCRG00000068744	ENSCCRG00000035159	ENSCCRG00000035137	ENSCCRG00000043521	mvp (ENSCCRG00000063252)	phb (ENSCCRG00000071295)	ENSCCRG00000027597	phospho1 (ENSCCRG00000072193)	natd1 (ENSCCRG00000064621)	tmem11 (ENSCCRG00000079334)	dhrs7b (ENSCCRG00000035210)	ENSCCRG00000035189 #20	jpt2 (ENSCCRG00000024677) #21	mapk8ip3 (ENSCCRG00000024729) #22	nme3 (ENSCCRG00000077594) #23	mrps34 (ENSCCRG00000067803) #24	spsb3a (ENSCCRG00000081756) #26	atp6v0ca (ENSCCRG00000034043)	lasp1 (ENSCCRG00000034071)	arl5c (ENSCCRG00000055814)	cacnb1 (ENSCCRG00000034181)	rpl19 (ENSCCRG00000060947)	ENSCCRG00000080364	ENSCCRG00000064650	eftud2 (ENSCCRG00000052325)	ENSCCRG00000034237	ENSCCRG00000049491	eps8l1a (ENSCCRG00000049480)	ENSCCRG00000049466
Golden-line barbel	MODERN SPECIES	450	ENSSGRG00000045177	DOC2A (ENSSGRG00000045179)	ENSSGRG00000045180	zgc:66474 (ENSSGRG00000045183)	ENSSGRG00000045185	ENSSGRG00000045186	mvp (ENSSGRG00000045187)	phb (ENSSGRG00000045225)	ENSSGRG00000045231	ENSSGRG00000045232	natd1 (ENSSGRG00000045234)	tmem11 (ENSSGRG00000045235)	dhrs7b (ENSSGRG00000045236)	CRAMP1 (ENSSGRG00000045237) #20	ENSSGRG00000045274	mapk8ip3 (ENSSGRG00000045285) #22	spsb3a (ENSSGRG00000046057) #26	atp6v0ca (ENSSGRG00000046060)	lasp1 (ENSSGRG00000046069)	arl5c (ENSSGRG00000046072)	cacnb1 (ENSSGRG00000046073)	ENSSGRG00000046075	acsl3b (ENSSGRG00000046095)	scg2b (ENSSGRG00000047251)	ap1s3b (ENSSGRG00000047252)	scg2b (ENSSGRG00000047254)	ENSSGRG00000047255	ENSSGRG00000047256
Zebrafish	MODERN SPECIES	18	nupr1b (ENSDARG00000094557)	DOC2A (ENSDARG00000078736)	ENSDARG00000092816	ENSDARG00000094328	zgc:66474 (ENSDARG00000026453)	zgc:66443 (ENSDARG00000057707)	mvp (ENSDARG00000021242)	phb (ENSDARG00000057414)	ZNF652 (ENSDARG00000062302)	phospho1 (ENSDARG00000008403)	natd1 (ENSDARG00000038281)	tmem11 (ENSDARG00000070866)	dhrs7b (ENSDARG00000075726)	CRAMP1 (ENSDARG00000079616) #20	jpt2 (ENSDARG00000034427) #21	mapk8ip3 (ENSDARG00000062531) #22	nme3 (ENSDARG00000100990) #23	mrps34 (ENSDARG00000057910) #24	spsb3a (ENSDARG00000077737) #26	atp6v0ca (ENSDARG00000057853)	ENSDARG00000097322	lasp1 (ENSDARG00000057867)	arl5c (ENSDARG00000035719)	cacnb1 (ENSDARG00000002167)	rpl19 (ENSDARG00000013307)	ENSDARG00000093569	ENSDARG00000021195	eftud2 (ENSDARG00000012261)	ENSDARG00000062618	ENSDARG00000073998	eps8l1a (ENSDARG00000057984)
Spotted gar	MODERN SPECIES	651	rasd1 (ENSLOCG00000001864)	MED9 (ENSLOCG00000001878)	NT5M (ENSLOCG00000001889)	COPS3 (ENSLOCG00000001909)	MPRIP (ENSLOCG00000001927)	ENSLOCG00000001973	usp22 (ENSLOCG00000001994)	KCNJ18 (ENSLOCG00000018090)	MAP2K3 (ENSLOCG00000002029)	natd1 (ENSLOCG00000002050)	tmem11 (ENSLOCG00000002065)	dhrs7b (ENSLOCG00000002078)	CRAMP1 (ENSLOCG00000002093) #20	jpt2 (ENSLOCG00000002135) #21	ENSLOCG00000002174	mapk8ip3 (ENSLOCG00000002193) #22	nme3 (ENSLOCG00000002228) #23	mrps34 (ENSLOCG00000002240) #24	EME2 (ENSLOCG00000002257) #25	spsb3a (ENSLOCG00000002279) #26	nubp2 (ENSLOCG00000002301) #27	ENSLOCG00000002318	ENSLOCG00000002334	ENSLOCG00000002363	coro7 (ENSLOCG00000002377)	vasna (ENSLOCG00000018091)	dnaja3b (ENSLOCG00000002434)	hmox2a (ENSLOCG00000002449)	CFAP70 (ENSLOCG00000002464)	ENSLOCG00000002506	ENSLOCG00000018092
Reedfish	MODERN SPECIES	2	rps15a (ENSECRG00000013979)	xylt1 (ENSECRG00000013951)	NOMO1 (ENSECRG00000013880)	TMC7 (ENSECRG00000013831)	TMC5 (ENSECRG00000013784)	mettl26 (ENSECRG00000013750)	WFIKKN1 (ENSECRG00000013716)	rab40c (ENSECRG00000013693)	ENSECRG00000013673	cyp2k19 (ENSECRG00000013656)	ndufb11 (ENSECRG00000013644)	CRAMP1 (ENSECRG00000013588) #20	ENSECRG00000013544	jpt2 (ENSECRG00000013500) #21	ENSECRG00000013462	mapk8ip3 (ENSECRG00000013413) #22	nme3 (ENSECRG00000013386) #23	telo2 (ENSECRG00000013350) #17	tmem204 (ENSECRG00000013331) #19	IFT140 (ENSECRG00000013300) #18	ENSECRG00000013257	ENSECRG00000013248	ENSECRG00000013234	ENSECRG00000013221	TSC2 (ENSECRG00000013024)	NTHL1 (ENSECRG00000012987)	NHERF2 (ENSECRG00000012973)	get4 (ENSECRG00000012932)	ENSECRG00000012910	sun1b (ENSECRG00000012868)	DNAAF5 (ENSECRG00000012779)
Elephant shark	MODERN SPECIES	1616									SYT6 (ENSCMIG00000008747)	ENSCMIG00000008754	DHRS4 (ENSCMIG00000008759)	KCNJ14 (ENSCMIG00000008766)	ENSCMIG00000008768	ENSCMIG00000008773 #21	ENSCMIG00000008779	mapk8ip3 (ENSCMIG00000008895) #22	NME3 (ENSCMIG00000009215) #23	rhbdl1 (ENSCMIG00000009217)	stub1 (ENSCMIG00000009221)	fbxl16 (ENSCMIG00000009223)	ENSCMIG00000009224	CRAMP1 (ENSCMIG00000009227) #20	wdr24 (ENSCMIG00000009228)	galr2b (ENSCMIG00000009231)	smim22 (ENSCMIG00000009233)	rogdi (ENSCMIG00000009239)	glyr1 (ENSCMIG00000009245)	UBN1 (ENSCMIG00000009254)	ppl (ENSCMIG00000009260)	ENSCMIG00000009261	ENSCMIG00000009263
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153496.a.a #22
Hagfish	MODERN SPECIES	926	ENSEBUG00000003836	csrp1a (ENSEBUG00000006711)	ENSEBUG00000013796	ENSEBUG00000006120	ENSEBUG00000003147	ENSEBUG00000003670	ENSEBUG00000017049	ENSEBUG00000003531	ENSEBUG00000012979	selenoi (ENSEBUG00000016452)	DEPTOR (ENSEBUG00000003676)	ENSEBUG00000008810	kcnk9 (ENSEBUG00000016087)	NME3 (ENSEBUG00000015136) #23	MBTD1 (ENSEBUG00000003473)	mapk8ip3 (ENSEBUG00000016122) #22	sumo2b (ENSEBUG00000001359)	ENSEBUG00000014106 #21	ENSEBUG00000002577 #20	tob1a (ENSEBUG00000014847)	ENSEBUG00000011011	ENSEBUG00000017029	TMEM204 (ENSEBUG00000012603) #19	foxred2 (ENSEBUG00000013252)	ENSEBUG00000006253	ENSEBUG00000012176	ENSEBUG00000013358	ENSEBUG00000004268	ENSEBUG00000003265	ENSEBUG00000003955	ENSEBUG00000004368
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	400														ENSGT00940000164818.c.a	ENSGT00940000153840.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000163867
Euteleostomi	ANCESTRAL SPECIES	401													ENSGT00440000033919	ENSGT00940000162213	ENSGT00940000153840.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000163867	ENSGT00940000164726
Actinopterygii	ANCESTRAL SPECIES	54		ENSGT00940000165932	ENSGT00390000012745	ENSGT00390000001244	ENSGT00940000156964.C	ENSGT00950000182849.B.c.b	ENSGT00940000158883.b	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00390000014660	ENSGT00530000063937.a ##25	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000162213	ENSGT00940000153840.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000163867	ENSGT00940000164726	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b
Neopterygii	ANCESTRAL SPECIES	89	ENSGT00940000165932	ENSGT00390000012745	ENSGT00390000001244	ENSGT00940000156964.C	ENSGT00950000182849.B.c.b	ENSGT00940000158883.b	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520	ENSGT00390000014660	ENSGT00530000063937.a ##25	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000162213	ENSGT00940000153840.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000163867	ENSGT00940000164726	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	24	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00950000182957.a.a.a	ENSGT00390000004010.a.b.a.a	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000164726.a	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100.b	ENSGT01050000244814.a.b.b
Clupeocephala	ANCESTRAL SPECIES	12	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127
Otomorpha	ANCESTRAL SPECIES	184			ENSGT00940000153500.a.a.w.b.h	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752
Clupeiformes	ANCESTRAL SPECIES	5	ENSGT00940000158754	ENSGT00720000108851	ENSGT00940000161953	ENSGT00390000015483	ENSGT00940000158766	ENSGT00390000006729	ENSGT00940000153232.a.a	ENSGT00940000158418	ENSGT00940000157814	ENSGT00950000183088.a.b.a	ENSGT00940000158235	ENSGT01090000259987.b.b.a.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000159717	ENSGT00940000154076.C.d
Atlantic herring	MODERN SPECIES	15	tdrd1 (ENSCHAG00000026245)	CCDC186 (ENSCHAG00000026177)	adrb1 (ENSCHAG00000026169)	NHLRC2 (ENSCHAG00000026131)	dclre1a (ENSCHAG00000026103)	ENSCHAG00000026095	casp7 (ENSCHAG00000026089)	nrap (ENSCHAG00000026046)	HABP2 (ENSCHAG00000025929)	dnmbp (ENSCHAG00000025799)	cpn1 (ENSCHAG00000025741)	itgb3b (ENSCHAG00000024921)	mettl9 (ENSCHAG00000024878)	kdelr2b (ENSCHAG00000024873)	DAGLB (ENSCHAG00000024540)	SPAG9 (ENSCHAG00000024308) ##22	tob1b (ENSCHAG00000024289)	ENSCHAG00000024288	ENSCHAG00000023621	ENSCHAG00000023581	sult2st2 (ENSCHAG00000023577)	ENSCHAG00000023487	bsk146 (ENSCHAG00000023481)	ENSCHAG00000023469	ENSCHAG00000023245	dhrs7cb (ENSCHAG00000023221)	hs3st3l (ENSCHAG00000023216) ##32	ENSCHAG00000023213	ENSCHAG00000023035	ENSCHAG00000022955	MYOCD (ENSCHAG00000022934)
Denticle herring	MODERN SPECIES	18	ENSDCDG00000031041	ARHGAP19 (ENSDCDG00000031032)	slit1a (ENSDCDG00000030265)	ENSDCDG00000030206	ENSDCDG00000030203	morn4 (ENSDCDG00000030200)	ENSDCDG00000030196	ENSDCDG00000030097	papss2a (ENSDCDG00000029691)	minpp1a (ENSDCDG00000029678)	sgms1a (ENSDCDG00000029675)	CHST15 (ENSDCDG00000029674)	GPR26 (ENSDCDG00000029673)	ENSDCDG00000029671	DAGLB (ENSDCDG00000029649)	SPAG9 (ENSDCDG00000029319) ##22	DHX57 (ENSDCDG00000029279)	galm (ENSDCDG00000029275)	atl2 (ENSDCDG00000029106)	ENSDCDG00000028917	ENSDCDG00000028900	macroh2a2 (ENSDCDG00000028894)	GBF1 (ENSDCDG00000025174)	pitx3 (ENSDCDG00000025042)	PNLIPRP2 (ENSDCDG00000024970)	hspa12a (ENSDCDG00000024026)	eno4 (ENSDCDG00000024011)	shtn1 (ENSDCDG00000024009)	atp6v1ba (ENSDCDG00000021445)	vax1 (ENSDCDG00000021379)	hells (ENSDCDG00000020562)
Otophysi	ANCESTRAL SPECIES		ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752
Characiphysae	ANCESTRAL SPECIES	1	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697	ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.a.f	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752
Channel catfish	MODERN SPECIES	4	ENSIPUG00000006717	Tubgcp2 (ENSIPUG00000006590)	myof (ENSIPUG00000006470)	ENSIPUG00000006406	rac1a (ENSIPUG00000006360)	crym (ENSIPUG00000006282)	snu13b (ENSIPUG00000006267)	uqcrc2b (ENSIPUG00000006223)	mosmob (ENSIPUG00000006204)	eef2k (ENSIPUG00000006144)	Polr3e (ENSIPUG00000006055)	cdr2b (ENSIPUG00000006008)	mettl9 (ENSIPUG00000005995)	KDELR2 (ENSIPUG00000005957)	daglb (ENSIPUG00000005930)	SPAG9 (ENSIPUG00000005844) ##22	tob1b (ENSIPUG00000005837)	ENSIPUG00000005832	abcc3 (ENSIPUG00000005801)	ENSIPUG00000005784	sult2st2 (ENSIPUG00000005762)	ACTB (ENSIPUG00000005742)	ENSIPUG00000005578	bsk146 (ENSIPUG00000005555)	ENSIPUG00000005546	ENSIPUG00000005451	dhrs7ca (ENSIPUG00000005408)	hs3st3l (ENSIPUG00000005400) ##32	ENSIPUG00000005382	glp2r (ENSIPUG00000005364)	rcvrnb (ENSIPUG00000005342)
Characiphysae_b	ANCESTRAL SPECIES	3											ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.a.f	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000163461.a.a.a.b.d	ENSGT00390000014667
Characoidei	ANCESTRAL SPECIES	50											ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.a.f	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752
Red-bellied piranha	MODERN SPECIES	530											polr3e (ENSPNAG00000008528)	CDR2 (ENSPNAG00000008534)	mettl9 (ENSPNAG00000005657)	KDELR2 (ENSPNAG00000001075)	DAGLB (ENSPNAG00000001083)	SPAG9 (ENSPNAG00000001153) ##22	tob1b (ENSPNAG00000001167)	ENSPNAG00000008721	ENSPNAG00000001204	ENSPNAG00000008831	ENSPNAG00000006030	ENSPNAG00000008843
Mexicana tetra	MODERN SPECIES	138											polr3e (ENSAMXG00000016328)	CDR2 (ENSAMXG00000031110)	mettl9 (ENSAMXG00000016309)	KDELR2 (ENSAMXG00000033502)	DAGLB (ENSAMXG00000016284)	SPAG9 (ENSAMXG00000016270) ##22	tob1b (ENSAMXG00000024849)	ENSAMXG00000016260	ENSAMXG00000016253	ENSAMXG00000016247	sult2st2 (ENSAMXG00000016243)	ENSAMXG00000016232	bsk146 (ENSAMXG00000039545)	ENSAMXG00000034267	ENSAMXG00000016185	dhrs7cb (ENSAMXG00000016169)	hs3st3l (ENSAMXG00000025015) ##32	ENSAMXG00000042457	ENSAMXG00000016128	rcvrnb (ENSAMXG00000032905)	PTS (ENSAMXG00000042819)
Electric eel	MODERN SPECIES	36	arl6ip5a (ENSEEEG00000004098)	FRMD4B (ENSEEEG00000004100)	mitfa (ENSEEEG00000004103)	foxp1b (ENSEEEG00000004114)	gpr27 (ENSEEEG00000004343)	prok2 (ENSEEEG00000004344)	rybpb (ENSEEEG00000004345)	shq1 (ENSEEEG00000004346)	gxylt2 (ENSEEEG00000004348)	ppp4r2b (ENSEEEG00000004352)	pdzrn3b (ENSEEEG00000004359)	ENSEEEG00000004372	mettl9 (ENSEEEG00000004528)	KDELR2 (ENSEEEG00000004529)	DAGLB (ENSEEEG00000004532)	SPAG9 (ENSEEEG00000004540) ##22	tob1b (ENSEEEG00000004578)	WFIKKN1 (ENSEEEG00000004580)	ENSEEEG00000004678	ENSEEEG00000007258	sult2st2 (ENSEEEG00000007261)	ENSEEEG00000007265	bsk146 (ENSEEEG00000007271)	ENSEEEG00000007272	ENSEEEG00000007276	dhrs7cb (ENSEEEG00000007288)	hs3st3l (ENSEEEG00000007291) ##32	ENSEEEG00000007293	ENSEEEG00000007296	PTS (ENSEEEG00000007297)	PTS (ENSEEEG00000007300)
Cyprinoidei	ANCESTRAL SPECIES	29	ENSGT00940000156623.g.b	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000165566.a	ENSGT00390000007041	ENSGT00940000158558.b	ENSGT00530000063702.b	ENSGT00940000159920.b.e	ENSGT00940000155698.B	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.a.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00940000156623.g.b.e	ENSGT00940000153653.a.b.a.b.i.b	ENSGT00390000011596.a.e.b	ENSGT00390000017379	ENSGT00940000165566.a	ENSGT00390000007041	ENSGT00940000158558.b.b	ENSGT00530000063702.b	ENSGT00940000159920.b.e.b	ENSGT00940000155698.B.b	ENSGT00390000016123.a.a	ENSGT00390000018570.a.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.b	ENSGT00940000156486.a.a	ENSGT00940000153496.a.b.a.a ##22	ENSGT00940000154208.c.b.h	ENSGT00940000158031.c.a	ENSGT00940000163867.k	ENSGT00940000164726.b	ENSGT00940000164900.ab	ENSGT00940000164900.`b.a	ENSGT00940000169412	ENSGT00940000165096.b.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.a.a.a	ENSGT00940000157100.a.c	ENSGT00940000154768.A.b.a ##32	ENSGT01050000244814.a.b.a.j	ENSGT00940000158127.d.a	ENSGT00940000166074.B
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00940000156623.g.b.e	ENSGT00940000153653.a.b.a.b.i.b	ENSGT00390000011596.a.e.b	ENSGT00390000017379	ENSGT00940000165566.a	ENSGT00390000007041	ENSGT00940000158558.b.b	ENSGT00530000063702.b	ENSGT00940000159920.b.e.b	ENSGT00940000155698.B.b	ENSGT00390000016123.a.a	ENSGT00390000018570.a.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.b	ENSGT00940000156486.a.a	ENSGT00940000153496.a.b.a.a ##22	ENSGT00940000154208.c.b.h	ENSGT00940000158031.c.a	ENSGT00940000163867.k	ENSGT00940000164726.b	ENSGT00940000164900.ab	ENSGT00940000164900.`b.a	ENSGT00940000169412	ENSGT00940000156922.b.a	ENSGT00940000164958.a.a.a.a	ENSGT00940000157100.a.c.a	ENSGT00940000154768.A.b.a ##32	ENSGT01050000244814.a.b.a.j	ENSGT00940000158127.d.a	ENSGT00940000166074.B	ENSGT00390000002752.c
Common carp reference	MODERN SPECIES	25	COPS3 (ENSCCRG00000066936)	NT5M (ENSCCRG00000062936)	ENSCCRG00000032442	MED9 (ENSCCRG00000070792)	rasd1 (ENSCCRG00000080098)	PEMT (ENSCCRG00000031443)	ENSCCRG00000055762	ENSCCRG00000059867	sox8a (ENSCCRG00000053716)	ENSCCRG00000037166	polr3e (ENSCCRG00000034779)	ENSCCRG00000034802	mettl9 (ENSCCRG00000081767)	kdelr2b (ENSCCRG00000034807)	ENSCCRG00000034813	ENSCCRG00000000537 ##22	tob1b (ENSCCRG00000050292)	ENSCCRG00000065253	ENSCCRG00000065958	ENSCCRG00000009958	ENSCCRG00000070881	ENSCCRG00000029753	ENSCCRG00000010082	ENSCCRG00000057103	ENSCCRG00000010114	dhrs7cb (ENSCCRG00000028586)	hs3st3l (ENSCCRG00000013890) ##32	ENSCCRG00000047945	ENSCCRG00000056718	rcvrnb (ENSCCRG00000047713)	ENSCCRG00000047681
Golden-line barbel	MODERN SPECIES	205	NT5M (ENSSGRG00000018077)	ENSSGRG00000018076	rasd1 (ENSSGRG00000018075)	PEMT (ENSSGRG00000018074)	RAB26 (ENSSGRG00000018073)	LMF1 (ENSSGRG00000018071)	ENSSGRG00000018070	sox8a (ENSSGRG00000018069)	ENSSGRG00000018046	polr3e (ENSSGRG00000017960)	ENSSGRG00000017959	mettl9 (ENSSGRG00000017958)	mettl9 (ENSSGRG00000017957)	kdelr2b (ENSSGRG00000017956)	ENSSGRG00000017955	SPAG9 (ENSSGRG00000017872) ##22	tob1b (ENSSGRG00000017871)	ENSSGRG00000017870	ENSSGRG00000015805	ENSSGRG00000015750	sult2st2 (ENSSGRG00000015743)	ENSSGRG00000015739	ENSSGRG00000015734	ENSSGRG00000015732
Goldfish	MODERN SPECIES	3	ENSCARG00000059827	usp22 (ENSCARG00000059082)	COPS3 (ENSCARG00000058999)	NT5M (ENSCARG00000058971)	rasd1 (ENSCARG00000058955)	PEMT (ENSCARG00000058942)	RAB26 (ENSCARG00000058714)	LMF1 (ENSCARG00000058647)	sox8a (ENSCARG00000058624)	ENSCARG00000058424	polr3e (ENSCARG00000058278)	ENSCARG00000058257	mettl9 (ENSCARG00000058255)	kdelr2b (ENSCARG00000058244)	DAGLB (ENSCARG00000055686)	SPAG9 (ENSCARG00000053551) ##22	tob1b (ENSCARG00000053508)	ENSCARG00000053497	ENSCARG00000042338	ENSCARG00000041920	ENSCARG00000041904	ENSCARG00000041873	ENSCARG00000041487	ENSCARG00000041460	bsk146 (ENSCARG00000041437)	ENSCARG00000041386	ENSCARG00000040938	dhrs7cb (ENSCARG00000040875)	hs3st3l (ENSCARG00000040865) ##32	ENSCARG00000040851	ENSCARG00000040794
Cyprininae	ANCESTRAL SPECIES	368											ENSGT00940000158558.b.a	ENSGT00940000159920.b.e.a	ENSGT00940000155698.B.a	ENSGT00390000004010.a.b.a.b.a	ENSGT00940000156486.a.b	ENSGT00940000153496.a.b.a.b ##22	ENSGT00940000154208.c.b.g	ENSGT00940000158031.c.b	ENSGT00940000163867.l	ENSGT00940000164900.`b.b	ENSGT00940000165096.b.b.a	ENSGT00940000164958.a.a.a.b	ENSGT00940000157100.a.d	ENSGT00940000154768.A.b.b ##32	ENSGT01050000244814.a.b.a.i	ENSGT00940000158127.d.b	ENSGT00390000002752.d	ENSGT00940000156268.a.b.f.b	ENSGT00950000182979.a.b.b.b.a.c.h.b	ENSGT00940000156854.s.d	ENSGT00940000176040
Cyprininae_a	ANCESTRAL SPECIES	413											ENSGT00940000158558.b.a	ENSGT00940000159920.b.e.a	ENSGT00940000155698.B.a	ENSGT00390000004010.a.b.a.b.a	ENSGT00940000156486.a.b	ENSGT00940000153496.a.b.a.b ##22	ENSGT00940000154208.c.b.g	ENSGT00940000158031.c.b	ENSGT00940000163867.l	ENSGT00940000164900.`b.b	ENSGT00940000165096.b.b.a	ENSGT00940000164958.a.a.a.b	ENSGT00940000157100.a.d	ENSGT00940000154768.A.b.b ##32	ENSGT01050000244814.a.b.a.i	ENSGT00940000158127.d.b	ENSGT00390000002752.d	ENSGT00940000156268.a.b.f.b	ENSGT00950000182979.a.b.b.b.a.c.h.b	ENSGT00940000156854.s.d	ENSGT00940000155709.i.a.a
Common carp reference	MODERN SPECIES	44	ENSCCRG00000021093	SSTR2 (ENSCCRG00000082765)	ENSCCRG00000013109	usp22 (ENSCCRG00000001858)	COPS3 (ENSCCRG00000001689)	ENSCCRG00000011418	MED9 (ENSCCRG00000077872)	rasd1 (ENSCCRG00000062490)	ENSCCRG00000061124	ENSCCRG00000053861	ENSCCRG00000076240	ENSCCRG00000059972	polr3e (ENSCCRG00000001009)	kdelr2b (ENSCCRG00000034774)	ENSCCRG00000062207	ENSCCRG00000061900 ##22	tob1b (ENSCCRG00000069974)	ENSCCRG00000078832	ENSCCRG00000033439	ENSCCRG00000009943	bsk146 (ENSCCRG00000052918)	ENSCCRG00000058951	dhrs7cb (ENSCCRG00000073701)	hs3st3l (ENSCCRG00000069304) ##32	ENSCCRG00000065615	ENSCCRG00000025195	ENSCCRG00000067851	ENSCCRG00000072382	ENSCCRG00000078605	ENSCCRG00000005691	ENSCCRG00000005627
Golden-line barbel	MODERN SPECIES	830										RAB26 (ENSSGRG00000036495)	sox8a (ENSSGRG00000036494)	ENSSGRG00000036493	polr3e (ENSSGRG00000036123)	ENSSGRG00000036112	kdelr2b (ENSSGRG00000036101)	ENSSGRG00000036099 ##22	tob1b (ENSSGRG00000036095)	ENSSGRG00000036093	ENSSGRG00000035898	bsk146 (ENSSGRG00000035890)	ENSSGRG00000035887	ENSSGRG00000035867	ENSSGRG00000035866	hs3st3l (ENSSGRG00000035865) ##32	ENSSGRG00000035864
Zebrafish	MODERN SPECIES	3	COPS3 (ENSDARG00000008623)	MED9 (ENSDARG00000096631)	rasd1 (ENSDARG00000019274)	ENSDARG00000115153	RASSF4 (ENSDARG00000112861)	PAOX (ENSDARG00000109596)	ENSDARG00000103614	RAB26 (ENSDARG00000104259)	LMF1 (ENSDARG00000102861)	sox8a (ENSDARG00000105301)	polr3e (ENSDARG00000037358)	ENSDARG00000037359	mettl9 (ENSDARG00000060001)	kdelr2b (ENSDARG00000037361)	DAGLB (ENSDARG00000089888)	SPAG9 (ENSDARG00000078142) ##22	tob1b (ENSDARG00000021372)	ENSDARG00000059139	ENSDARG00000096662	ENSDARG00000079791	sult2st2 (ENSDARG00000103785)	ENSDARG00000096522	sult2st1 (ENSDARG00000033170)	ENSDARG00000096669	ENSDARG00000096562	bsk146 (ENSDARG00000099069)	ENSDARG00000090142	ENSDARG00000102081	dhrs7cb (ENSDARG00000071877)	hs3st3l (ENSDARG00000059903) ##32	ENSDARG00000045265
Euteleosteomorpha	ANCESTRAL SPECIES	90								ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00840000130048	ENSGT00400000022326.b.a.b.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B	ENSGT00730000111100.a.b	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b	ENSGT00390000014681.r	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT01100000263520.a.a.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT01100000263520.a.a.a.a.b.a.c.a	ENSGT00940000165096.b.a	ENSGT00940000156922.b.b	ENSGT00940000164958.b	ENSGT00940000155556.c
Northern pike	MODERN SPECIES	4	desi1b (ENSELUG00000020313)	ENSELUG00000020324	mrtfab (ENSELUG00000020339)	tha1 (ENSELUG00000020367)	eef2k (ENSELUG00000000906)	polr3e (ENSELUG00000020683)	CDR2 (ENSELUG00000033724)	ENSELUG00000028258	ENSELUG00000020703	mettl9 (ENSELUG00000020737)	kdelr2b (ENSELUG00000020755)	ENSELUG00000032053	ENSELUG00000020794	ENSELUG00000020812	DAGLB (ENSELUG00000020824)	SPAG9 (ENSELUG00000020918) ##22	tob1b (ENSELUG00000020940)	ENSELUG00000000922	ENSELUG00000021077	ENSELUG00000021151	sult2st2 (ENSELUG00000021184)	bsk146 (ENSELUG00000021441)	ENSELUG00000034405	ENSELUG00000021495	dhrs7cb (ENSELUG00000021537)	ENSELUG00000031240	hs3st3l (ENSELUG00000021570) ##32	ENSELUG00000026219	ENSELUG00000021603	pts (ENSELUG00000021740)	ENSELUG00000021771
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b.a.c ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b.a.c ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b.a.c ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b.a.c ##22
Chinook salmon	MODERN SPECIES	1748															ENSOTSG00005032836	ENSOTSG00005032833 ##22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	639							ENSGT00940000157839.g	ENSGT00390000016123.c	ENSGT00390000018570.a.a.a.e	ENSGT01100000263520.a.a.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.b	ENSGT00390000004010.a.b.a.b.c	ENSGT00940000162287.B.a.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.b	ENSGT00940000156486.e	ENSGT00940000153496.a.b.a.d.a ##22	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1176																ENSHHUG00000014317 ##22	tob1b (ENSHHUG00000014416)	ENSHHUG00000014420	ENSHHUG00000014445	ENSHHUG00000015008	ENSHHUG00000015054	sult2st2 (ENSHHUG00000015056)	ENSHHUG00000015071	bsk146 (ENSHHUG00000015136)	ENSHHUG00000015151	ENSHHUG00000015159
Huchen	MODERN SPECIES	2437							polr3e (ENSHHUG00000044473)	ENSHHUG00000044466	ENSHHUG00000044462	ENSHHUG00000044458	kdelr2b (ENSHHUG00000044439)	ENSHHUG00000044431	ENSHHUG00000044419	ENSHHUG00000044418	DAGLB (ENSHHUG00000044409)	ENSHHUG00000044402 ##22
Salmoninae_a	ANCESTRAL SPECIES	45	ENSGT00940000158365.f.a.f	ENSGT00390000009228.b.c	ENSGT00940000153239.B.e	ENSGT00730000111100.a.b.a	ENSGT00940000163663.A.b.f	ENSGT00950000182979.a.a.a.b.c	ENSGT00940000157839.g	ENSGT00390000016123.c	ENSGT00390000018570.a.a.a.e	ENSGT01100000263520.a.a.a.b.a.b.c.b	ENSGT00400000022326.b.a.b.a.b.b	ENSGT00390000004010.a.b.a.b.c	ENSGT00940000162287.B.a.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.b	ENSGT00940000156486.e	ENSGT00940000153496.a.b.a.d.a ##22	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.b.b	ENSGT00940000154768.A.b.k.a ##32	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752
Salmo	ANCESTRAL SPECIES	31	ENSGT00940000158365.f.a.f	ENSGT00390000009228.b.c	ENSGT00940000153239.B.e	ENSGT00730000111100.a.b.a	ENSGT00940000163663.A.b.f	ENSGT00950000182979.a.a.a.b.c	ENSGT00940000157839.g	ENSGT00390000016123.c	ENSGT00390000018570.a.a.a.e	ENSGT00950000182774.b.b.a.b.a	ENSGT00990000211426	ENSGT00390000004010.a.b.a.b.c	ENSGT00940000162287.B.a.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.b	ENSGT00940000156486.e	ENSGT00940000153496.a.b.a.d.a ##22	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.a	ENSGT00940000154768.A.b.k.a ##32	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752
River trout	MODERN SPECIES	1	ENSSTUG00000033286	josd1 (ENSSTUG00000033281)	xrcc6 (ENSSTUG00000033204)	desi1b (ENSSTUG00000033183)	ENSSTUG00000033172	mrtfab (ENSSTUG00000033097)	eef2k (ENSSTUG00000033025)	polr3e (ENSSTUG00000032948)	CDR2 (ENSSTUG00000032936)	ENSSTUG00000032910	ENSSTUG00000032899	kdelr2b (ENSSTUG00000032886)	ENSSTUG00000032868	ENSSTUG00000032847	DAGLB (ENSSTUG00000032465)	ENSSTUG00000031240 ##22	tob1b (ENSSTUG00000031207)	ENSSTUG00000031204	ENSSTUG00000017823	ENSSTUG00000017467	ENSSTUG00000017434	ENSSTUG00000017426	ENSSTUG00000017254	bsk146 (ENSSTUG00000017226)	ENSSTUG00000017214	ENSSTUG00000016652	dhrs7cb (ENSSTUG00000016599)	ENSSTUG00000016589	hs3st3l (ENSSTUG00000016573) ##32	ENSSTUG00000016565	ENSSTUG00000016554
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000097592	josd1 (ENSSSAG00000121535)	xrcc6 (ENSSSAG00000079807)	desi1b (ENSSSAG00000115637)	ENSSSAG00000079804	ENSSSAG00000079798	EEF2K (ENSSSAG00000079744)	polr3e (ENSSSAG00000079653)	CDR2 (ENSSSAG00000079643)	ENSSSAG00000079637	ENSSSAG00000079634	ENSSSAG00000090574	kdelr2b (ENSSSAG00000093584)	ENSSSAG00000079623	ENSSSAG00000089417	ENSSSAG00000078566 ##22	TOB1 (ENSSSAG00000078507)	ENSSSAG00000088503	ENSSSAG00000069554	ENSSSAG00000069146	ENSSSAG00000069083	bsk146 (ENSSSAG00000069073)	ENSSSAG00000069068	ENSSSAG00000081902	ENSSSAG00000068705	dhrs7c (ENSSSAG00000068680)	ENSSSAG00000121037	hs3st3l (ENSSSAG00000104478) ##32	ENSSSAG00000108791	ENSSSAG00000117669	ENSSSAG00000109700
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000158365.f.a.f	ENSGT00390000009228.b.c	ENSGT00940000153239.B.e	ENSGT00730000111100.a.b.a	ENSGT00940000163663.A.b.f	ENSGT00950000182979.a.a.a.b.c	ENSGT00940000157839.g	ENSGT00390000016123.c	ENSGT00390000018570.a.a.a.e	ENSGT01100000263520.a.a.a.b.a.b.c.b	ENSGT00400000022326.b.a.b.a.b.b	ENSGT00390000004010.a.b.a.b.c	ENSGT00940000162287.B.a.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.b	ENSGT00940000156486.e	ENSGT00940000153496.a.b.a.d.a ##22	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.b.b	ENSGT00940000154768.A.b.k.a ##32	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000016958	ENSOMYG00000017047	ENSOMYG00000051420	ENSOMYG00000018427	wdr24 (ENSOMYG00000018447)	ENSOMYG00000018493	ENSOMYG00000018518	h1-0 (ENSOMYG00000071351)	polr3e (ENSOMYG00000018552)	ENSOMYG00000018665	ENSOMYG00000018686	ENSOMYG00000018724	kdelr2b (ENSOMYG00000018731)	ENSOMYG00000018747	ENSOMYG00000018815	ENSOMYG00000019307 ##22	ENSOMYG00000019694	tob1b (ENSOMYG00000019699)	ENSOMYG00000019704	ENSOMYG00000019854	ENSOMYG00000021277	sult2st2 (ENSOMYG00000021337)	ENSOMYG00000021411	bsk146 (ENSOMYG00000021458)	ENSOMYG00000021469	ENSOMYG00000021706	dhrs7cb (ENSOMYG00000022376)	ENSOMYG00000005293	hs3st3l (ENSOMYG00000005318) ##32	ENSOMYG00000051443	ENSOMYG00000005403
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000158365.f.a.f	ENSGT00390000009228.b.c	ENSGT00940000153239.B.e	ENSGT00730000111100.a.b.a	ENSGT00940000163663.A.b.f	ENSGT00950000182979.a.a.a.b.c	ENSGT00940000157839.g	ENSGT00390000016123.c	ENSGT00390000018570.a.a.a.e	ENSGT00950000182774.b.b.a.b.a	ENSGT01010000230123	ENSGT00390000004010.a.b.a.b.c	ENSGT00940000162287.B.a.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.b	ENSGT00940000156486.e	ENSGT00940000153496.a.b.a.d.a ##22	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.b.b	ENSGT00940000154768.A.b.k.a ##32	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752
Coho salmon	MODERN SPECIES	17	CBX7 (ENSOKIG00005050669)	josd1 (ENSOKIG00005050666)	xrcc6 (ENSOKIG00005050664)	desi1b (ENSOKIG00005050661)	ENSOKIG00005050660	mrtfab (ENSOKIG00005050650)	EEF2K (ENSOKIG00005050633)	polr3e (ENSOKIG00005050614)	CDR2 (ENSOKIG00005050601)	ENSOKIG00005050596	ENSOKIG00005050590	kdelr2b (ENSOKIG00005050586)	ENSOKIG00005050581	ENSOKIG00005050578	DAGLB (ENSOKIG00005050558)	ENSOKIG00005050522 ##22	tob1b (ENSOKIG00005050493)	ENSOKIG00005050492	ENSOKIG00005049358	ENSOKIG00005048812	sult2st2 (ENSOKIG00005048798)	ENSOKIG00005048747	bsk146 (ENSOKIG00005048736)	ENSOKIG00005048731	ENSOKIG00005048630	dhrs7cb (ENSOKIG00005048610)	ENSOKIG00005048606	hs3st3l (ENSOKIG00005048604) ##32	ENSOKIG00005048600	ENSOKIG00005048594	PTS (ENSOKIG00005048587)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	50						mrtfab (ENSOTSG00005046616)	eef2k (ENSOTSG00005046606)	polr3e (ENSOTSG00005046587)	CDR2 (ENSOTSG00005046585)	ENSOTSG00005046584	ENSOTSG00005046583	kdelr2b (ENSOTSG00005046582)	ENSOTSG00005046580	ENSOTSG00005046579	DAGLB (ENSOTSG00005046547)	ENSOTSG00005046455 ##22	tob1b (ENSOTSG00005046454)	ENSOTSG00005046453	ENSOTSG00005046452	ENSOTSG00005025063	ENSOTSG00005024991	ENSOTSG00005024985	ENSOTSG00005024984	bsk146 (ENSOTSG00005024983)	ENSOTSG00005024982	ENSOTSG00005024973	dhrs7cb (ENSOTSG00005024970)	ENSOTSG00005024965	hs3st3l (ENSOTSG00005024964) ##32	ENSOTSG00005024963	ENSOTSG00005024962
Chinook salmon	MODERN SPECIES	17	tefa (ENSOTSG00005044952)	EP300 (ENSOTSG00005044301)	CBX7 (ENSOTSG00005044289)	josd1 (ENSOTSG00005044288)	xrcc6 (ENSOTSG00005044285)	desi1b (ENSOTSG00005044282)	ENSOTSG00005044281	polr3e (ENSOTSG00005044219)	ENSOTSG00005044218	ENSOTSG00005044217	ENSOTSG00005044216	kdelr2b (ENSOTSG00005044215)	ENSOTSG00005044214	ENSOTSG00005044213	DAGLB (ENSOTSG00005044123)	ENSOTSG00005043328 ##22	tob1b (ENSOTSG00005043304)	ENSOTSG00005043299	ENSOTSG00005043282	ENSOTSG00005012697	ENSOTSG00005012476	ENSOTSG00005012475	ENSOTSG00005012474	bsk146 (ENSOTSG00005012473)	ENSOTSG00005012472	ENSOTSG00005012304	dhrs7cb (ENSOTSG00005012294)	ENSOTSG00005012293	ENSOTSG00005012290	hs3st3l (ENSOTSG00005012289) ##32	ENSOTSG00005012286
Salmoninae	ANCESTRAL SPECIES	662								ENSGT00950000182979.a.a.a.b.d	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b ##22	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00940000156878.i.a.b.j	ENSGT01010000223290
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00730000111100.a.b.b	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT01100000263556.b.a.b	ENSGT00940000164807.E.a.a.a.b.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00840000130048	ENSGT00400000022326.b.a.b.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.a.a.b	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b ##22	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00950000183576	ENSGT00940000156878.i.a.b.j	ENSGT01010000223290	ENSGT00940000159704.i	ENSGT00940000157404	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT01010000227566	ENSGT00950000183133.c.b	ENSGT00390000003349.x	ENSGT00940000154632.rb
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT00400000022326.b.a.b.a.b.a.a.a	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01100000263556.b.a.b	ENSGT00940000164807.E.a.a.a.b.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00400000022326.b.a.b.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.a.a.b	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b ##22	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00950000183576	ENSGT00940000156878.i.a.b.j	ENSGT00940000159704.i	ENSGT00960000193277.d	ENSGT01020000231608	ENSGT00940000157404	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT00950000183133.c.b	ENSGT00390000003349.x	ENSGT00940000154632.rb
River trout	DUPLICATION
River trout	MODERN SPECIES	9	mrtfab (ENSSTUG00000033398)	ENSSTUG00000033391	tha1 (ENSSTUG00000033376)	eef2k (ENSSTUG00000033337)	polr3e (ENSSTUG00000032076)	CDR2 (ENSSTUG00000032030)	ENSSTUG00000032011	ENSSTUG00000031999	ENSSTUG00000031994	ENSSTUG00000031990	mettl9 (ENSSTUG00000031974)	kdelr2b (ENSSTUG00000031949)	ENSSTUG00000031941	ENSSTUG00000031923	DAGLB (ENSSTUG00000030896)	SPAG9 (ENSSTUG00000030775) ##22	SLC18A3 (ENSSTUG00000030771)	ENSSTUG00000030763 ##22	SLC18A3 (ENSSTUG00000030761)	CHAT (ENSSTUG00000030714)	ENSSTUG00000030661	arf4b (ENSSTUG00000030584)	flrt3 (ENSSTUG00000030579)	ENSSTUG00000030575	ENSSTUG00000030557	ENSSTUG00000030485	mad2l1bp (ENSSTUG00000030475)	ENSSTUG00000030468	ENSSTUG00000030457	si:dkey-76k16.6 (ENSSTUG00000030452)	mgme1 (ENSSTUG00000030440)
River trout	MODERN SPECIES	9	tha1 (ENSSTUG00000033376)	eef2k (ENSSTUG00000033337)	polr3e (ENSSTUG00000032076)	CDR2 (ENSSTUG00000032030)	ENSSTUG00000032011	ENSSTUG00000031999	ENSSTUG00000031994	ENSSTUG00000031990	mettl9 (ENSSTUG00000031974)	kdelr2b (ENSSTUG00000031949)	ENSSTUG00000031941	ENSSTUG00000031923	DAGLB (ENSSTUG00000030896)	SPAG9 (ENSSTUG00000030775) ##22	SLC18A3 (ENSSTUG00000030771)	ENSSTUG00000030763 ##22	SLC18A3 (ENSSTUG00000030761)	CHAT (ENSSTUG00000030714)	ENSSTUG00000030661	arf4b (ENSSTUG00000030584)	flrt3 (ENSSTUG00000030579)	ENSSTUG00000030575	ENSSTUG00000030557	ENSSTUG00000030485	mad2l1bp (ENSSTUG00000030475)	ENSSTUG00000030468	ENSSTUG00000030457	si:dkey-76k16.6 (ENSSTUG00000030452)	mgme1 (ENSSTUG00000030440)	snx5 (ENSSTUG00000030428)	rrbp1a (ENSSTUG00000030382)
Atlantic salmon	MODERN SPECIES		eef2k (ENSSSAG00000001615)	ENSSSAG00000088707	ENSSSAG00000001561	CDR2 (ENSSSAG00000088344)	ENSSSAG00000092741	ENSSSAG00000001538	ENSSSAG00000116752	ENSSSAG00000116975	ENSSSAG00000001531	ENSSSAG00000001526	mettl9 (ENSSSAG00000001523)	kdelr2b (ENSSSAG00000106651)	ENSSSAG00000001515	ENSSSAG00000089513	ENSSSAG00000083817	ENSSSAG00000001100 ##22	ENSSSAG00000001005	ENSSSAG00000000991	ENSSSAG00000000969	ENSSSAG00000105707	ENSSSAG00000122154	ARF4 (ENSSSAG00000000952)	flrt3 (ENSSSAG00000000935)	ENSSSAG00000099965	ENSSSAG00000083876	ENSSSAG00000000923	ENSSSAG00000107074	ENSSSAG00000071942	mad2l1bp (ENSSSAG00000111635)	CYT (ENSSSAG00000071927)	ENSSSAG00000119742
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00730000111100.a.b.b	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT01100000263556.b.a.b	ENSGT00940000164807.E.a.a.a.b.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00840000130048	ENSGT00400000022326.b.a.b.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.a.a.b	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b ##22	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00950000183576	ENSGT00940000156878.i.a.b.j	ENSGT01010000223290	ENSGT00940000159704.i	ENSGT01070000255972.B	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT01010000227566	ENSGT00950000183133.c.b	ENSGT00390000003349.x	ENSGT00940000154632.rb
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000044584	ENSOMYG00000044581	CDR2 (ENSOMYG00000044576)	ENSOMYG00000048942	ENSOMYG00000044568	ENSOMYG00000044563	ENSOMYG00000068091	ENSOMYG00000044554	ENSOMYG00000044550	kdelr2b (ENSOMYG00000044545)	ENSOMYG00000044539	ENSOMYG00000044535	ENSOMYG00000044530	ENSOMYG00000044528	ENSOMYG00000044463	ENSOMYG00000041328 ##22	ENSOMYG00000041167	ENSOMYG00000041150	ENSOMYG00000041130	ENSOMYG00000041138	ENSOMYG00000041143	ENSOMYG00000054342	ENSOMYG00000072730	ENSOMYG00000038774	ENSOMYG00000041120	ENSOMYG00000061603	ENSOMYG00000057162	ENSOMYG00000041110	ENSOMYG00000041079	mad2l1bp (ENSOMYG00000041056)	ENSOMYG00000041054
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000153239.B.f	ENSGT00730000111100.a.b.b	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT01100000263556.b.a.b	ENSGT00940000164807.E.a.a.a.b.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00400000022326.b.a.b.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.a.a.b	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b ##22	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00950000183576	ENSGT00940000156878.i.a.b.j	ENSGT01010000223290	ENSGT00940000159704.i	ENSGT01070000255972.B	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT01010000227566	ENSGT00950000183133.c.b	ENSGT00390000003349.x	ENSGT00940000154632.rb
Coho salmon	MODERN SPECIES	2	ENSOKIG00005007067	tha1 (ENSOKIG00005007124)	eef2k (ENSOKIG00005007171)	POLR3E (ENSOKIG00005007240)	ENSOKIG00005007282	CDR2 (ENSOKIG00005007306)	ENSOKIG00005007329	ENSOKIG00005007343	ENSOKIG00005007337	ENSOKIG00005007348	mettl9 (ENSOKIG00005007355)	kdelr2b (ENSOKIG00005007374)	ENSOKIG00005007391	ENSOKIG00005007400	DAGLB (ENSOKIG00005007413)	SPAG9 (ENSOKIG00005007617) ##22	SLC18A3 (ENSOKIG00005011719)	CHAT (ENSOKIG00005011748)	ENSOKIG00005011856	ARF5 (ENSOKIG00005011910)	ENSOKIG00005012006	flrt3 (ENSOKIG00005012075)	ENSOKIG00005012081	ENSOKIG00005012090	mad2l1bp (ENSOKIG00005012145)	ENSOKIG00005012173	ENSOKIG00005012182	si:dkey-76k16.6 (ENSOKIG00005012195)	mgme1 (ENSOKIG00005012202)	snx5 (ENSOKIG00005012251)	rrbp1a (ENSOKIG00005012499)
Chinook salmon	MODERN SPECIES		ENSOTSG00005014074	mrtfab (ENSOTSG00005014071)	ENSOTSG00005014069	tha1 (ENSOTSG00005014068)	eef2k (ENSOTSG00005014062)	polr3e (ENSOTSG00005014038)	CDR2 (ENSOTSG00005014036)	ENSOTSG00005014035	ENSOTSG00005014034	ENSOTSG00005014033	mettl9 (ENSOTSG00005014032)	kdelr2b (ENSOTSG00005014031)	ENSOTSG00005014029	ENSOTSG00005014028	DAGLB (ENSOTSG00005013548)	SPAG9 (ENSOTSG00005008937) ##22	SLC18A3 (ENSOTSG00005008920)	ENSOTSG00005008919	ENSOTSG00005008915	flrt3 (ENSOTSG00005008914)	mecp2 (ENSOTSG00005008909)	ENSOTSG00005008908	ENSOTSG00005008907	ENSOTSG00005008904	mad2l1bp (ENSOTSG00005008903)	ENSOTSG00005008902	ENSOTSG00005008900	ENSOTSG00005008899	si:dkey-76k16.6 (ENSOTSG00005008897)	mgme1 (ENSOTSG00005008894)	snx5 (ENSOTSG00005008893)
Huchen	MODERN SPECIES	761	eef2k (ENSHHUG00000016190)	polr3e (ENSHHUG00000016215)	ENSHHUG00000016314	ENSHHUG00000016320	CDR2 (ENSHHUG00000016325)	ENSHHUG00000016338	ENSHHUG00000016354	ENSHHUG00000016427	ENSHHUG00000016433	ENSHHUG00000016440	ENSHHUG00000016444	mettl9 (ENSHHUG00000016492)	kdelr2b (ENSHHUG00000016496)	ENSHHUG00000016510	DAGLB (ENSHHUG00000016522)	SPAG9 (ENSHHUG00000016561) ##22	SLC18A3 (ENSHHUG00000016882)	CHAT (ENSHHUG00000016883)	ARF5 (ENSHHUG00000016940)	ENSHHUG00000016980
Acanthomorphata	ANCESTRAL SPECIES	147															ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127
Cod	MODERN SPECIES	9	ENSGMOG00000004610	ENSGMOG00000036083	ENSGMOG00000013247	ENSGMOG00000023623	ENSGMOG00000014489	ENSGMOG00000030764	mrpl38 (ENSGMOG00000014475)	ENSGMOG00000037252	ENSGMOG00000014451	wbp2 (ENSGMOG00000014438)	UNC13D (ENSGMOG00000014366)	ENSGMOG00000014314	H3-3B (ENSGMOG00000029864)	ENSGMOG00000027733	ENSGMOG00000014193	ENSGMOG00000035843 ##22	tob1b (ENSGMOG00000010013)	ENSGMOG00000010021	ENSGMOG00000010029	ENSGMOG00000013303	INSYN2A (ENSGMOG00000022713)	dock1 (ENSGMOG00000001074)	ENSGMOG00000024965	ENSGMOG00000024962	foxi1 (ENSGMOG00000026966)	ENSGMOG00000023979	foxi1 (ENSGMOG00000005470)	ENSGMOG00000015020	ENSGMOG00000014054	ENSGMOG00000014095	ENSGMOG00000035788
Euacanthomorphacea	ANCESTRAL SPECIES	34	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00390000013268	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127
Pinecone sodierfish	MODERN SPECIES	10	FDXR (ENSMMDG00005014426)	mrpl38 (ENSMMDG00005016485)	ENSMMDG00005016489	wbp2 (ENSMMDG00005016492)	UNC13D (ENSMMDG00005016498)	unk (ENSMMDG00005016510)	ENSMMDG00005016514	ENSMMDG00005016517	zgc:194990 (ENSMMDG00005016522)	itgb4 (ENSMMDG00005016547)	sap30bp (ENSMMDG00005016862)	ENSMMDG00005016869	CDR2L (ENSMMDG00005016872)	mrpl58 (ENSMMDG00005016874)	DAGLB (ENSMMDG00005016899)	SPAG9 (ENSMMDG00005017338) ##22	tob1b (ENSMMDG00005017695)	ENSMMDG00005017697	ENSMMDG00005017787	ENSMMDG00005022900	sult2st2 (ENSMMDG00005022907)	ENSMMDG00005022914	bsk146 (ENSMMDG00005022921)	ENSMMDG00005022922	ENSMMDG00005022926	dhrs7cb (ENSMMDG00005022945)	hs3st3l (ENSMMDG00005022991) ##32	ENSMMDG00005022993	ENSMMDG00005022996	PTS (ENSMMDG00005023004)	gas7a (ENSMMDG00005023007)
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	339																SPAG9 (ENSHCOG00000009203) ##22	TOB1 (ENSHCOG00000009219)	WFIKKN2 (ENSHCOG00000009234)	ENSHCOG00000009294	ENSHCOG00000009352	sult2st2 (ENSHCOG00000009362)	galk1 (ENSHCOG00000009393)	llgl2 (ENSHCOG00000009498)	ENSHCOG00000000296	ca10a (ENSHCOG00000009575)	MBTD1 (ENSHCOG00000009615)	ENSHCOG00000009639
Tiger tail seahorse	MODERN SPECIES	420	rac3b (ENSHCOG00000017939)	dcxr (ENSHCOG00000017953)	rfng (ENSHCOG00000018118)	atp6v0a1b (ENSHCOG00000018172)	cavin1b (ENSHCOG00000018193)	stat5b (ENSHCOG00000018669)	ENSHCOG00000018711	ube2d1b (ENSHCOG00000018731)	ipmkb (ENSHCOG00000018748)	NAGLU (ENSHCOG00000018756)	tfam (ENSHCOG00000018795)	ENSHCOG00000018819	CDR2L (ENSHCOG00000018859)	mrpl58 (ENSHCOG00000018870)	DAGLB (ENSHCOG00000018935)	ENSHCOG00000018961 ##22
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.b.a.b	ENSGT00510000049652 #12	ENSGT01100000263504.a.b.a.a	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a	ENSGT00940000158127	ENSGT00390000002752
Ovalentaria_B	ANCESTRAL SPECIES	28	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.a	ENSGT00510000049652 #12	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a	ENSGT00940000158127
Pomacentridae	ANCESTRAL SPECIES	39	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT01000000216149	ENSGT00990000211971	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000154457.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900.j	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Pomacentridae_A	ANCESTRAL SPECIES	87	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT01000000216149	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000154457.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b
Amphiprion	ANCESTRAL SPECIES	112	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000154457.a.b	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b
Clown anemonefish	MODERN SPECIES	1815											ercc4 (ENSAOCG00000018038)	CDR2L (ENSAOCG00000018011)	mrpl58 (ENSAOCG00000017975)	ENSAOCG00000017964	DAGLB (ENSAOCG00000017935)	SPAG9 (ENSAOCG00000017913) ##22	tob1b (ENSAOCG00000017801)	ENSAOCG00000001246	TOX2 (ENSAOCG00000017743)
Spiny chromis	MODERN SPECIES	1003												CDR2L (ENSAPOG00000005810)	ENSAPOG00000001092	ENSAPOG00000005779	DAGLB (ENSAPOG00000005741)	SPAG9 (ENSAPOG00000001120) ##22
Bicolor damselfish	MODERN SPECIES	590	mrpl38 (ENSSPAG00000011844)	ENSSPAG00000011811	wbp2 (ENSSPAG00000011799)	UNC13D (ENSSPAG00000011710)	unk (ENSSPAG00000011660)	H3-3B (ENSSPAG00000011645)	ENSSPAG00000011614	zgc:194990 (ENSSPAG00000011563)	itgb4 (ENSSPAG00000011394)	sap30bp (ENSSPAG00000011351)	ENSSPAG00000011345	CDR2L (ENSSPAG00000011330)	mrpl58 (ENSSPAG00000011315)	ENSSPAG00000011300	DAGLB (ENSSPAG00000011248)	SPAG9 (ENSSPAG00000011066) ##22	tob1b (ENSSPAG00000011043)	WFIKKN2 (ENSSPAG00000011038)	ENSSPAG00000010916
Cichlidae	ANCESTRAL SPECIES	28	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a	ENSGT00940000158127
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.a	ENSGT00510000049652 #12	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a.b.a.b.a	ENSGT00940000158127
Nile tilapia	MODERN SPECIES	20	ENSONIG00000038418	FDXR (ENSONIG00000019621)	mrpl38 (ENSONIG00000019618)	ENSONIG00000019615	wbp2 (ENSONIG00000019613)	UNC13D (ENSONIG00000019611)	unk (ENSONIG00000019608)	ENSONIG00000037692	ENSONIG00000033714	zgc:194990 (ENSONIG00000019606)	itgb4 (ENSONIG00000019600)	sap30bp (ENSONIG00000019599)	CDR2L (ENSONIG00000019598)	MRPL58 (ENSONIG00000019597)	DAGLB (ENSONIG00000019595)	SPAG9 (ENSONIG00000019590) ##22	tob1b (ENSONIG00000021200)	WFIKKN2 (ENSONIG00000019589)	ENSONIG00000019586	ENSONIG00000019585	sult2st2 (ENSONIG00000019581)	ENSONIG00000027287	bsk146 (ENSONIG00000019578)	ENSONIG00000034733	ENSONIG00000019573	dhrs7cb (ENSONIG00000019572)	hs3st3l (ENSONIG00000019571) ##32	ENSONIG00000028825	ENSONIG00000030625	ENSONIG00000019565	PTS (ENSONIG00000029984)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870.l	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	337	FDXR (ENSNBRG00000014334)	mrpl38 (ENSNBRG00000014232)	ENSNBRG00000014210	wbp2 (ENSNBRG00000014204)	UNC13D (ENSNBRG00000014123)	unk (ENSNBRG00000014087)	ENSNBRG00000014066	ENSNBRG00000014035	zgc:194990 (ENSNBRG00000014007)	itgb4 (ENSNBRG00000013790)	sap30bp (ENSNBRG00000013731)	ENSNBRG00000013710	MRPL58 (ENSNBRG00000013694)	DAGLB (ENSNBRG00000013665)	ENSNBRG00000013640 ##22	SPAG9 (ENSNBRG00000013598) ##22	tob1b (ENSNBRG00000013593)	WFIKKN2 (ENSNBRG00000013585)	ENSNBRG00000013326	ENSNBRG00000013235	sult2st2 (ENSNBRG00000013053)	ENSNBRG00000012925	bsk146 (ENSNBRG00000012899)	ENSNBRG00000012890	ENSNBRG00000012879	ENSNBRG00000012829	dhrs7cb (ENSNBRG00000012793)	hs3st3l (ENSNBRG00000012775) ##32	ENSNBRG00000012766	ENSNBRG00000012607	ENSNBRG00000012564
Lyretail cichlid	MODERN SPECIES	337	LRRC18 (ENSNBRG00000014358)	FDXR (ENSNBRG00000014334)	mrpl38 (ENSNBRG00000014232)	ENSNBRG00000014210	wbp2 (ENSNBRG00000014204)	UNC13D (ENSNBRG00000014123)	unk (ENSNBRG00000014087)	ENSNBRG00000014066	ENSNBRG00000014035	zgc:194990 (ENSNBRG00000014007)	itgb4 (ENSNBRG00000013790)	sap30bp (ENSNBRG00000013731)	ENSNBRG00000013710	MRPL58 (ENSNBRG00000013694)	DAGLB (ENSNBRG00000013665)	ENSNBRG00000013640 ##22	SPAG9 (ENSNBRG00000013598) ##22	tob1b (ENSNBRG00000013593)	WFIKKN2 (ENSNBRG00000013585)	ENSNBRG00000013326	ENSNBRG00000013235	sult2st2 (ENSNBRG00000013053)	ENSNBRG00000012925	bsk146 (ENSNBRG00000012899)	ENSNBRG00000012890	ENSNBRG00000012879	ENSNBRG00000012829	dhrs7cb (ENSNBRG00000012793)	hs3st3l (ENSNBRG00000012775) ##32	ENSNBRG00000012766	ENSNBRG00000012607
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870.l	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Burton s mouthbrooder	MODERN SPECIES	328	FDXR (ENSHBUG00000005163)	mrpl38 (ENSHBUG00000005176)	ENSHBUG00000005201	wbp2 (ENSHBUG00000005238)	ENSHBUG00000005295	unk (ENSHBUG00000005306)	h3f3a (ENSHBUG00000005326)	ENSHBUG00000005350	zgc:194990 (ENSHBUG00000005373)	itgb4 (ENSHBUG00000005820)	sap30bp (ENSHBUG00000005855)	ENSHBUG00000005877	CDR2L (ENSHBUG00000005905)	mrpl58 (ENSHBUG00000005924)	DAGLB (ENSHBUG00000001098)	SPAG9 (ENSHBUG00000006048) ##22	tob1b (ENSHBUG00000006073)	ENSHBUG00000006079	ENSHBUG00000006240	ENSHBUG00000006277	sult2st2 (ENSHBUG00000006292)	ENSHBUG00000006385	bsk146 (ENSHBUG00000006399)	ENSHBUG00000006420	ENSHBUG00000006461	dhrs7cb (ENSHBUG00000006484)	hs3st3l (ENSHBUG00000006491) ##32	ENSHBUG00000006498	ENSHBUG00000006536	PTS (ENSHBUG00000006569)	ENSHBUG00000006591
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870.l	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870.l	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Zebra mbuna	MODERN SPECIES	1111	ENSMZEG00005006157	FDXR (ENSMZEG00005006124)	mrpl38 (ENSMZEG00005006032)	ENSMZEG00005006011	wbp2 (ENSMZEG00005005993)	ENSMZEG00005005893	unk (ENSMZEG00005005872)	ENSMZEG00005005854	zgc:194990 (ENSMZEG00005005831)	itgb4 (ENSMZEG00005005545)	sap30bp (ENSMZEG00005005453)	ENSMZEG00005005440	CDR2L (ENSMZEG00005005418)	mrpl58 (ENSMZEG00005005403)	DAGLB (ENSMZEG00005005390)	SPAG9 (ENSMZEG00005005252) ##22	tob1b (ENSMZEG00005005215)	ENSMZEG00005005209	ENSMZEG00005005089	ENSMZEG00005005053	ENSMZEG00005005017	ENSMZEG00005004988	sult2st2 (ENSMZEG00005004967)	ENSMZEG00005004884	bsk146 (ENSMZEG00005004872)	ENSMZEG00005004862	ENSMZEG00005004744	dhrs7cb (ENSMZEG00005004727)	hs3st3l (ENSMZEG00005004699) ##32	ENSMZEG00005004664	ENSMZEG00005004619
Eastern happy	MODERN SPECIES	20	ENSACLG00000021745	mrpl38 (ENSACLG00000021758)	ENSACLG00000021779	wbp2 (ENSACLG00000021801)	ENSACLG00000021847	unk (ENSACLG00000022043)	ENSACLG00000022376	ENSACLG00000022399	zgc:194990 (ENSACLG00000022429)	itgb4 (ENSACLG00000022478)	sap30bp (ENSACLG00000022984)	ENSACLG00000023008	CDR2L (ENSACLG00000023031)	mrpl58 (ENSACLG00000023065)	DAGLB (ENSACLG00000023087)	SPAG9 (ENSACLG00000023098) ##22	tob1b (ENSACLG00000023247)	ENSACLG00000023254	ENSACLG00000023302	ENSACLG00000023473	sult2st2 (ENSACLG00000023496)	ENSACLG00000023516	ENSACLG00000023634	bsk146 (ENSACLG00000023640)	ENSACLG00000023664	ENSACLG00000023684	ENSACLG00000023870	ENSACLG00000023878	hs3st3l (ENSACLG00000023888) ##32	ENSACLG00000023897	ENSACLG00000023904
P. nyererei	MODERN SPECIES	300	FDXR (ENSPNYG00000006417)	mrpl38 (ENSPNYG00000006442)	ENSPNYG00000006457	wbp2 (ENSPNYG00000006480)	ENSPNYG00000006493	unk (ENSPNYG00000006566)	ENSPNYG00000006614	ENSPNYG00000006621	zgc:194990 (ENSPNYG00000006657)	itgb4 (ENSPNYG00000006737)	sap30bp (ENSPNYG00000007154)	ENSPNYG00000007212	CDR2L (ENSPNYG00000007233)	MRPL58 (ENSPNYG00000007275)	DAGLB (ENSPNYG00000007301)	SPAG9 (ENSPNYG00000007317) ##22	tob1b (ENSPNYG00000007390)	ENSPNYG00000007398	ENSPNYG00000007415	ENSPNYG00000007493	sult2st2 (ENSPNYG00000007560)	ENSPNYG00000007593	bsk146 (ENSPNYG00000007740)	ENSPNYG00000007802	ENSPNYG00000007826	dhrs7cb (ENSPNYG00000007945)	hs3st3l (ENSPNYG00000007968) ##32	ENSPNYG00000008052	ENSPNYG00000008120	PTS (ENSPNYG00000008149)	ENSPNYG00000008174
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	194	FDXR (ENSACIG00000019937)	mrpl38 (ENSACIG00000019923)	ENSACIG00000019909	wbp2 (ENSACIG00000019898)	UNC13D (ENSACIG00000019864)	unk (ENSACIG00000019830)	ENSACIG00000019814	ENSACIG00000019781	zgc:194990 (ENSACIG00000019753)	itgb4 (ENSACIG00000019386)	sap30bp (ENSACIG00000019326)	CDR2L (ENSACIG00000019317)	MRPL58 (ENSACIG00000019303)	DAGLB (ENSACIG00000019274)	ENSACIG00000019262 ##22	SPAG9 (ENSACIG00000019230) ##22	tob1b (ENSACIG00000019208)	ENSACIG00000019205	ENSACIG00000019167	ENSACIG00000019131	ENSACIG00000019118
Midas cichlid	MODERN SPECIES	194	ENSACIG00000019957	FDXR (ENSACIG00000019937)	mrpl38 (ENSACIG00000019923)	ENSACIG00000019909	wbp2 (ENSACIG00000019898)	UNC13D (ENSACIG00000019864)	unk (ENSACIG00000019830)	ENSACIG00000019814	ENSACIG00000019781	zgc:194990 (ENSACIG00000019753)	itgb4 (ENSACIG00000019386)	sap30bp (ENSACIG00000019326)	CDR2L (ENSACIG00000019317)	MRPL58 (ENSACIG00000019303)	DAGLB (ENSACIG00000019274)	ENSACIG00000019262 ##22	SPAG9 (ENSACIG00000019230) ##22	tob1b (ENSACIG00000019208)	ENSACIG00000019205	ENSACIG00000019167	ENSACIG00000019131	ENSACIG00000019118
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.a.hb.b	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00510000049652 #12	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.a.hb.b	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Aplocheiloidei	ANCESTRAL SPECIES	93													ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT01090000260189	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Mangrove rivulus	MODERN SPECIES	35	tmem184ba (ENSKMAG00000021939)	csnk1e (ENSKMAG00000021950)	ENSKMAG00000021954	ENSKMAG00000021964	ENSKMAG00000021965	ENSKMAG00000021968	pdap1a (ENSKMAG00000021971)	cby1 (ENSKMAG00000021974)	ENSKMAG00000021978	ENSKMAG00000021983	csdc2a (ENSKMAG00000021992)	aco2 (ENSKMAG00000021995)	CDR2L (ENSKMAG00000000163)	ENSKMAG00000000189	DAGLB (ENSKMAG00000000202)	SPAG9 (ENSKMAG00000000215) ##22	tob1b (ENSKMAG00000000403)	ENSKMAG00000000421	ENSKMAG00000000460	ENSKMAG00000000666	sult2st2 (ENSKMAG00000000733)	ENSKMAG00000000830	bsk146 (ENSKMAG00000000978)	ENSKMAG00000001030	ENSKMAG00000001047	dhrs7cb (ENSKMAG00000001100)	hs3st3l (ENSKMAG00000001118) ##32	GSG1L2 (ENSKMAG00000001126)	GLP2R (ENSKMAG00000001155)	PTS (ENSKMAG00000001178)	ENSKMAG00000001190
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015021611	Nfu_g_1_023463 (ENSNFUG00015021614)	ogfod3 (ENSNFUG00015021628)	HEXDC (ENSNFUG00015021668)	ENSNFUG00015021677	C17ORF62 (ENSNFUG00015021680)	NARF (ENSNFUG00015021685)	FDXR (ENSNFUG00015021716)	ENSNFUG00015022207	Nfu_g_1_022963 (ENSNFUG00015022209)	ENSNFUG00015022211	ENSNFUG00015022212	CDR2L (ENSNFUG00015022216)	ENSNFUG00015022219	DAGLB (ENSNFUG00015022225)	CABZ01073118.1 (ENSNFUG00015022288) ##22	Nfu_g_1_022781 (ENSNFUG00015022728)	ENSNFUG00015022731	ENSNFUG00015022861	ENSNFUG00015023807	ENSNFUG00015023813	MRPL38 (ENSNFUG00015023824)	SAP30BP (ENSNFUG00015023832)	itgb4 (ENSNFUG00015023956)	Nfu_g_1_023008 (ENSNFUG00015024463)	ENSNFUG00015024467	H3F3B.1 (ENSNFUG00015024472)	UNK (ENSNFUG00015024481)
Cyprinodontoidei	ANCESTRAL SPECIES	28	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT01080000257338.B.d	ENSGT00940000171764	ENSGT00390000013268	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b.e	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT01080000257338.B.d	ENSGT00390000013268	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867.p	ENSGT00940000163867.o	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Poecilia	ANCESTRAL SPECIES	15	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b.e	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT01080000257338.B.d	ENSGT00390000013268	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867.p	ENSGT00940000163867.o	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Guppy	DUPLICATION
Guppy	MODERN SPECIES	449	mrpl38 (ENSPREG00000019258)	ENSPREG00000019252	wbp2 (ENSPREG00000019240)	UNC13D (ENSPREG00000019146)	unk (ENSPREG00000019108)	ENSPREG00000019092	ENSPREG00000019016	zgc:194990 (ENSPREG00000018963)	itgb4 (ENSPREG00000018879)	sap30bp (ENSPREG00000018844)	ENSPREG00000018835	CDR2L (ENSPREG00000018824)	ENSPREG00000018816	ENSPREG00000018808	DAGLB (ENSPREG00000018790)	ENSPREG00000018747 ##22	ENSPREG00000018707 ##22	tob1b (ENSPREG00000018697)	ENSPREG00000018689	ENSPREG00000018577	ENSPREG00000018508	ENSPREG00000018480	sult2st2 (ENSPREG00000018412)	ENSPREG00000018332	bsk146 (ENSPREG00000018315)	ENSPREG00000018302	ENSPREG00000018238	dhrs7cb (ENSPREG00000018215)	hs3st3l (ENSPREG00000018211) ##32	ENSPREG00000018205	GLP2R (ENSPREG00000018116)
Guppy	MODERN SPECIES	449	ENSPREG00000019252	wbp2 (ENSPREG00000019240)	UNC13D (ENSPREG00000019146)	unk (ENSPREG00000019108)	ENSPREG00000019092	ENSPREG00000019016	zgc:194990 (ENSPREG00000018963)	itgb4 (ENSPREG00000018879)	sap30bp (ENSPREG00000018844)	ENSPREG00000018835	CDR2L (ENSPREG00000018824)	ENSPREG00000018816	ENSPREG00000018808	DAGLB (ENSPREG00000018790)	ENSPREG00000018747 ##22	ENSPREG00000018707 ##22	tob1b (ENSPREG00000018697)	ENSPREG00000018689	ENSPREG00000018577	ENSPREG00000018508	ENSPREG00000018480	sult2st2 (ENSPREG00000018412)	ENSPREG00000018332	bsk146 (ENSPREG00000018315)	ENSPREG00000018302	ENSPREG00000018238	dhrs7cb (ENSPREG00000018215)	hs3st3l (ENSPREG00000018211) ##32	ENSPREG00000018205	GLP2R (ENSPREG00000018116)	pts (ENSPREG00000018060)
NAME_6	ANCESTRAL SPECIES		ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b.e	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT01080000257338.B.d	ENSGT00390000013268	ENSGT00940000156486.c	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867.o	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Sailfin molly	MODERN SPECIES	491				unk (ENSPLAG00000017785)	ENSPLAG00000017719	ENSPLAG00000017715	zgc:194990 (ENSPLAG00000017667)	itgb4 (ENSPLAG00000017592)	sap30bp (ENSPLAG00000016882)	ENSPLAG00000016874	CDR2L (ENSPLAG00000016870)	ENSPLAG00000016861	MRPL58 (ENSPLAG00000016858)	ENSPLAG00000016851	DAGLB (ENSPLAG00000016835)	SPAG9 (ENSPLAG00000016801) ##22	tob1b (ENSPLAG00000016731)	ENSPLAG00000016727
Amazon molly	MODERN SPECIES	256	FDXR (ENSPFOG00000018312)	mrpl38 (ENSPFOG00000018349)	ENSPFOG00000018360	wbp2 (ENSPFOG00000018368)	UNC13D (ENSPFOG00000018382)	unk (ENSPFOG00000018477)	ENSPFOG00000018492	ENSPFOG00000018493	zgc:194990 (ENSPFOG00000018501)	itgb4 (ENSPFOG00000018521)	sap30bp (ENSPFOG00000018575)	CDR2L (ENSPFOG00000018585)	ENSPFOG00000020245	MRPL58 (ENSPFOG00000018595)	DAGLB (ENSPFOG00000018611)	SPAG9 (ENSPFOG00000018668) ##22	tob1b (ENSPFOG00000020246)	ENSPFOG00000018726	WFIKKN2 (ENSPFOG00000018728)	ENSPFOG00000018731	ENSPFOG00000018740	ENSPFOG00000018797	sult2st2 (ENSPFOG00000018827)	ENSPFOG00000018833	bsk146 (ENSPFOG00000018838)	ENSPFOG00000018849	ENSPFOG00000018859	dhrs7cb (ENSPFOG00000018884)	hs3st3l (ENSPFOG00000018893) ##32	ENSPFOG00000018898	GLP2R (ENSPFOG00000018904)
Platyfish	MODERN SPECIES	1	ENSXMAG00000012654	wbp2 (ENSXMAG00000021482)	UNC13D (ENSXMAG00000012584)	unk (ENSXMAG00000012562)	ENSXMAG00000018951	ENSXMAG00000012547	zgc:194990 (ENSXMAG00000012540)	ENSXMAG00000027175	itgb4 (ENSXMAG00000012430)	sap30bp (ENSXMAG00000012425)	ENSXMAG00000019470	CDR2L (ENSXMAG00000020888)	ENSXMAG00000019468	MRPL58 (ENSXMAG00000012414)	DAGLB (ENSXMAG00000012391)	SPAG9 (ENSXMAG00000012309) ##22	tob1b (ENSXMAG00000019465)	ENSXMAG00000012308	ENSXMAG00000012203	ENSXMAG00000023506	ENSXMAG00000003234	sult2st2 (ENSXMAG00000005413)	ENSXMAG00000005408	bsk146 (ENSXMAG00000005403)	ENSXMAG00000005400	ENSXMAG00000021924	dhrs7cb (ENSXMAG00000005349)	hs3st3l (ENSXMAG00000009759) ##32	ENSXMAG00000009767	GLP2R (ENSXMAG00000005305)	PTS (ENSXMAG00000005299)
NAME_4	ANCESTRAL SPECIES	27	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT01030000239580	ENSGT00390000018570.b.a	ENSGT01080000257338.B.d.g	ENSGT00940000171764	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1425											CDR2L (ENSCVAG00000016714)	ENSCVAG00000016679	ENSCVAG00000016670	DAGLB (ENSCVAG00000016624)	ENSCVAG00000016609 ##22	ENSCVAG00000016597 ##22
Sheepshead minnow	MODERN SPECIES	1425												CDR2L (ENSCVAG00000016714)	ENSCVAG00000016679	ENSCVAG00000016670	DAGLB (ENSCVAG00000016624)	ENSCVAG00000016609 ##22	ENSCVAG00000016597 ##22
Mummichog	MODERN SPECIES	2209	mrpl38 (ENSFHEG00000017457)	ENSFHEG00000017501	wbp2 (ENSFHEG00000017509)	UNC13D (ENSFHEG00000017593)	unk (ENSFHEG00000017609)	ENSFHEG00000017620	ENSFHEG00000017633	zgc:194990 (ENSFHEG00000017641)	itgb4 (ENSFHEG00000018292)	sap30bp (ENSFHEG00000018313)	ENSFHEG00000018320	CDR2L (ENSFHEG00000018323)	ENSFHEG00000000473	mrpl58 (ENSFHEG00000018330)	DAGLB (ENSFHEG00000018338)	SPAG9 (ENSFHEG00000018441) ##22	tob1b (ENSFHEG00000018451)	ENSFHEG00000018464	ENSFHEG00000018647	ENSFHEG00000018670	sult2st2 (ENSFHEG00000018680)	ENSFHEG00000019025	bsk146 (ENSFHEG00000019092)	ENSFHEG00000019097	ENSFHEG00000019128	dhrs7cb (ENSFHEG00000019150)	hs3st3l (ENSFHEG00000019168) ##32	ENSFHEG00000019193	GLP2R (ENSFHEG00000019228)	PTS (ENSFHEG00000019262)	ENSFHEG00000019306
Oryzias	ANCESTRAL SPECIES	44	ENSGT00940000167859	ENSGT00730000111333.b	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000154244.A.a.b	ENSGT00940000153560.b.a.a.n.b	ENSGT00720000108863.k	ENSGT00940000167740	ENSGT01000000214725.C	ENSGT01030000234527.A.a.b.a.b	ENSGT00390000018409.g	ENSGT00550000074823.b.a	ENSGT00940000154335.b	ENSGT00390000016052	ENSGT00940000154696
Oryzias_b	ANCESTRAL SPECIES	52	ENSGT00940000167859	ENSGT00730000111333.b	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT01050000245041	ENSGT00940000154244.A.a.b	ENSGT00940000153560.b.a.a.n.b	ENSGT00720000108863.k	ENSGT00940000167740	ENSGT01000000214725.C	ENSGT01030000234527.A.a.b.a.b	ENSGT00390000018409.g	ENSGT00550000074823.b.a	ENSGT00940000163053.c.b	ENSGT00390000016052
Indian medaka	MODERN SPECIES	707												ENSOMEG00000016615	CDR2L (ENSOMEG00000016604)	mrpl58 (ENSOMEG00000016576)	DAGLB (ENSOMEG00000016559)	ENSOMEG00000016518 ##22	tob1b (ENSOMEG00000016373)	ENSOMEG00000016363	ENSOMEG00000000409	ENSOMEG00000016148	ENSOMEG00000016056	ENSOMEG00000016026	ENSOMEG00000015939	AATK (ENSOMEG00000015916)	BAIAP2 (ENSOMEG00000015818)	ENSOMEG00000015695	CHMP6 (ENSOMEG00000015689)	ENSOMEG00000015646	ENSOMEG00000015667	dpysl4 (ENSOMEG00000015625)	minpp1b (ENSOMEG00000015586)
Oryzias_a	ANCESTRAL SPECIES	73						ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.a	ENSGT00940000154244.A.a.b	ENSGT00940000153560.b.a.a.n.b	ENSGT00720000108863.k	ENSGT00940000167740	ENSGT01000000214725.C	ENSGT01030000234527.A.a.b.a.b	ENSGT00390000018409.g	ENSGT00550000074823.b.a	ENSGT00940000154335.b	ENSGT00390000016052
Japanese Medaka HdrR	MODERN SPECIES	10				UNC13D (ENSORLG00000025206)	unk (ENSORLG00000028573)	ENSORLG00000029739	H3-3B (ENSORLG00000000314)	zgc:194990 (ENSORLG00000025363)	itgb4 (ENSORLG00000020765)	sap30bp (ENSORLG00000030062)	ENSORLG00000027915	CDR2L (ENSORLG00000025968)	mrpl58 (ENSORLG00000020755)	DAGLB (ENSORLG00000020753)	ENSORLG00000030508	ENSORLG00000020750 ##22	ENSORLG00000023027	tob1b (ENSORLG00000020744)	ENSORLG00000025773	ENSORLG00000029516	ENSORLG00000020741	ENSORLG00000028833	ENSORLG00000023094	ENSORLG00000024376	ENSORLG00000025045	ENSORLG00000028091	AATK (ENSORLG00000030499)	ENSORLG00000030648	ENSORLG00000029518	BAIAP2 (ENSORLG00000020733)	CHMP6 (ENSORLG00000020730)
Chinese medaka	MODERN SPECIES	1176														CDR2L (ENSOSIG00000013744)	mrpl58 (ENSOSIG00000013739)	ENSOSIG00000013724 ##22
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00510000049652 #12	ENSGT01100000263504.a.b.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00950000182977.B.b.b.a	ENSGT00950000182977.B.b.b.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000156268.a.b
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a.eb	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000160705.C.b
Perciformes	ANCESTRAL SPECIES	9	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a.eb	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Cottioidei	ANCESTRAL SPECIES	41	ENSGT00390000013574	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00900000141125	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT01000000216149	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900
Stickleback	MODERN SPECIES	5	ENSGACG00000004832	EP300 (ENSGACG00000004836)	ENSGACG00000004855	josd1 (ENSGACG00000004862)	ENSGACG00000004865	xrcc6 (ENSGACG00000004868)	desi1b (ENSGACG00000004894)	rbp3 (ENSGACG00000004900)	ENSGACG00000004906	ubtd1b (ENSGACG00000004908)	mms19 (ENSGACG00000004915)	zdhhc16b (ENSGACG00000004937)	vps35l (ENSGACG00000004948)	get4 (ENSGACG00000004961)	DAGLB (ENSGACG00000004974)	SPAG9 (ENSGACG00000004995) ##22	tob1b (ENSGACG00000005010)	mrtfab (ENSGACG00000005014)	ENSGACG00000005029	CDR2L (ENSGACG00000005031)	sap30bp (ENSGACG00000005046)	itgb4 (ENSGACG00000005054)	zgc:194990 (ENSGACG00000005073)	ENSGACG00000005086	ENSGACG00000005089	ENSGACG00000005090	unk (ENSGACG00000005102)	UNC13D (ENSGACG00000005106)	wbp2 (ENSGACG00000005127)	ENSGACG00000005140	ENSGACG00000005142
Lumpfish	MODERN SPECIES	10	mrpl38 (ENSCLMG00005021434)	ENSCLMG00005021432	ENSCLMG00005021431	wbp2 (ENSCLMG00005021430)	UNC13D (ENSCLMG00005021428)	unk (ENSCLMG00005021425)	ENSCLMG00005021423	ENSCLMG00005021419	zgc:194990 (ENSCLMG00005021417)	itgb4 (ENSCLMG00005019684)	sap30bp (ENSCLMG00005019648)	ENSCLMG00005019647	CDR2L (ENSCLMG00005019645)	mrpl58 (ENSCLMG00005019644)	DAGLB (ENSCLMG00005019632)	SPAG9 (ENSCLMG00005019277) ##22	tob1b (ENSCLMG00005019274)	WFIKKN2 (ENSCLMG00005019272)	ENSCLMG00005001991	ENSCLMG00005001817	sult2st2 (ENSCLMG00005001643)	foxk2a (ENSCLMG00005001601)	ENSCLMG00005001584	mettl9 (ENSCLMG00005001571)	ENSCLMG00005001550	ENSCLMG00005001534	ENSCLMG00005001521	wdr45b (ENSCLMG00005022388)	ENSCLMG00005022386	NHERF1 (ENSCLMG00005022385)	ENSCLMG00005022383
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a.eb	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752	ENSGT00940000156268.a.b
Channel bull blenny	MODERN SPECIES	10	AATK (ENSCGOG00000023046)	BAIAP2 (ENSCGOG00000023039)	CHMP6 (ENSCGOG00000022996)	SLC43A3 (ENSCGOG00000022987)	ENSCGOG00000022985	ABCA5 (ENSCGOG00000022731)	asb3 (ENSCGOG00000022716)	ENSCGOG00000022715	htra1b (ENSCGOG00000022709)	PLEKHA1 (ENSCGOG00000022707)	ENSCGOG00000022706	ENSCGOG00000022703	ENSCGOG00000022691	ENSCGOG00000022688	DAGLB (ENSCGOG00000022554)	SPAG9 (ENSCGOG00000022107) ##22	tob1b (ENSCGOG00000022084)	ENSCGOG00000022082	ENSCGOG00000022080	ENSCGOG00000018623	ENSCGOG00000018561	sult2st2 (ENSCGOG00000018560)	ENSCGOG00000018558	bsk146 (ENSCGOG00000018552)	ENSCGOG00000018551	ENSCGOG00000017936	dhrs7cb (ENSCGOG00000017912)	hs3st3l (ENSCGOG00000017911) ##32	ENSCGOG00000017910	ENSCGOG00000017861	PTS (ENSCGOG00000017856)
Pike perch	MODERN SPECIES	88	mrpl38 (ENSSLUG00000022114)	ENSSLUG00000022108	wbp2 (ENSSLUG00000022103)	UNC13D (ENSSLUG00000022071)	unk (ENSSLUG00000022052)	ENSSLUG00000022047	ENSSLUG00000022038	zgc:194990 (ENSSLUG00000022033)	itgb4 (ENSSLUG00000021615)	sap30bp (ENSSLUG00000021555)	ENSSLUG00000021551	ENSSLUG00000021547	CDR2L (ENSSLUG00000021545)	mrpl58 (ENSSLUG00000021541)	DAGLB (ENSSLUG00000021469)	SPAG9 (ENSSLUG00000021342) ##22	tob1b (ENSSLUG00000021318)	ENSSLUG00000021316	ENSSLUG00000007852	ENSSLUG00000007012	bsk146 (ENSSLUG00000006920)	ENSSLUG00000006910
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a.db.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00390000013268	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000177816	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Gilthead seabream	MODERN SPECIES	12	FDXR (ENSSAUG00010020362)	mrpl38 (ENSSAUG00010020343)	mrpl38 (ENSSAUG00010020337)	ENSSAUG00010020336	wbp2 (ENSSAUG00010020335)	ENSSAUG00010020331	unk (ENSSAUG00010020204)	ENSSAUG00010020201	ENSSAUG00010020200	zgc:194990 (ENSSAUG00010020198)	itgb4 (ENSSAUG00010015444)	sap30bp (ENSSAUG00010015381)	CDR2L (ENSSAUG00010015378)	mrpl58 (ENSSAUG00010015375)	DAGLB (ENSSAUG00010013729)	SPAG9 (ENSSAUG00010012366) ##22	tob1b (ENSSAUG00010012319)	ENSSAUG00010012318	ENSSAUG00010011408	ENSSAUG00010011371	ENSSAUG00010011357	rab3gap1 (ENSSAUG00010011349)	CSNK1D (ENSSAUG00010011197)	slc16a3b (ENSSAUG00010011193)	ccdc57 (ENSSAUG00010011080)	ENSSAUG00010010865	CHRM3 (ENSSAUG00010010846)	ENSSAUG00010010843	ENSSAUG00010010841	ENSSAUG00010010840	tmem26b (ENSSAUG00010010839)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a.db.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00390000013268	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900.l	ENSGT00940000177816	ENSGT00940000164900.k	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127
European seabass	MODERN SPECIES	11	ENSDLAG00005004470	mrpl38 (ENSDLAG00005034858)	ENSDLAG00005004354	wbp2 (ENSDLAG00005004313)	UNC13D (ENSDLAG00005024774)	ENSDLAG00005028762	UNK (ENSDLAG00005024769)	ENSDLAG00005031026	ENSDLAG00005028146	zgc:194990 (ENSDLAG00005034992)	ITGB4 (ENSDLAG00005023633)	sap30bp (ENSDLAG00005023574)	ENSDLAG00005023565	ENSDLAG00005027671	ENSDLAG00005023317	ENSDLAG00005022687 ##22	tob1b (ENSDLAG00005034568)	ENSDLAG00005022653	ENSDLAG00005020393	ENSDLAG00005020316	ENSDLAG00005020263	ENSDLAG00005035129	ENSDLAG00005029819	ENSDLAG00005003423	ENSDLAG00005005838	ENSDLAG00005013800	ENSDLAG00005030054	ENSDLAG00005033641	ENSDLAG00005008076	bsk146 (ENSDLAG00005008164)	ENSDLAG00005008182
Large yellow croaker	MODERN SPECIES	488	FDXR (ENSLCRG00005021888)	mrpl38 (ENSLCRG00005021882)	ENSLCRG00005021878	wbp2 (ENSLCRG00005021877)	UNC13D (ENSLCRG00005021875)	unk (ENSLCRG00005021872)	ENSLCRG00005021869	ENSLCRG00005021860	zgc:194990 (ENSLCRG00005021857)	itgb4 (ENSLCRG00005020330)	sap30bp (ENSLCRG00005020272)	ENSLCRG00005020270	CDR2L (ENSLCRG00005020268)	MRPL58 (ENSLCRG00005020266)	DAGLB (ENSLCRG00005020262)	SPAG9 (ENSLCRG00005020016) ##22	tob1b (ENSLCRG00005020008)	ENSLCRG00005020006	ENSLCRG00005014216	ENSLCRG00005014111	ENSLCRG00005014110	ENSLCRG00005014108	ENSLCRG00005014106	ENSLCRG00005014105	PLCD3 (ENSLCRG00005013902)	acbd4 (ENSLCRG00005013872)	ARHGAP23 (ENSLCRG00005013846)	ENSLCRG00005013845	ENSLCRG00005013844	ENSLCRG00005013843	ENSLCRG00005013842
Ballan wrasse	MODERN SPECIES	141	narf (ENSLBEG00000024232)	FDXR (ENSLBEG00000024202)	ENSLBEG00000024192	mrpl38 (ENSLBEG00000024159)	ENSLBEG00000024132	wbp2 (ENSLBEG00000024108)	UNC13D (ENSLBEG00000024046)	unk (ENSLBEG00000023956)	ENSLBEG00000023888	zgc:194990 (ENSLBEG00000023853)	itgb4 (ENSLBEG00000023459)	sap30bp (ENSLBEG00000023289)	CDR2L (ENSLBEG00000023236)	mrpl58 (ENSLBEG00000023210)	DAGLB (ENSLBEG00000023178)	SPAG9 (ENSLBEG00000022932) ##22	tob1b (ENSLBEG00000022891)	ENSLBEG00000022879	ENSLBEG00000022786	ENSLBEG00000022746	ENSLBEG00000022732	sult2st2 (ENSLBEG00000022706)	ENSLBEG00000022652	c1qtnf1 (ENSLBEG00000022624)	ENSLBEG00000022611	RBFOX3 (ENSLBEG00000022508)
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00940000171204	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00390000018570.b.a	ENSGT00390000013268	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Fugu	MODERN SPECIES		narf (ENSTRUG00000008423)	FDXR (ENSTRUG00000008164)	mrpl38 (ENSTRUG00000008024)	ENSTRUG00000029396	wbp2 (ENSTRUG00000007743)	UNC13D (ENSTRUG00000007542)	unk (ENSTRUG00000007192)	ENSTRUG00000019921	ENSTRUG00000024659	zgc:194990 (ENSTRUG00000025865)	itgb4 (ENSTRUG00000005807)	sap30bp (ENSTRUG00000005672)	CDR2L (ENSTRUG00000025573)	MRPL58 (ENSTRUG00000027333)	DAGLB (ENSTRUG00000005319)	SPAG9 (ENSTRUG00000003579) ##22	tob1b (ENSTRUG00000003534)	ENSTRUG00000003421	ENSTRUG00000002402	ENSTRUG00000031061	sult2st2 (ENSTRUG00000017213)	ENSTRUG00000023473	bsk146 (ENSTRUG00000017210)	ENSTRUG00000032088	ENSTRUG00000017208	dhrs7cb (ENSTRUG00000017206)	hs3st3l (ENSTRUG00000017205) ##32	ENSTRUG00000017204	ENSTRUG00000017202	PTS (ENSTRUG00000019502)	ENSTRUG00000022295
Tetraodon	MODERN SPECIES	13	ENSTNIG00000011524	ENSTNIG00000011523	hexdc (ENSTNIG00000011522)	cybc1 (ENSTNIG00000011521)	narf (ENSTNIG00000011520)	ENSTNIG00000011519	wbp2 (ENSTNIG00000011518)	UNC13D (ENSTNIG00000011517)	unk (ENSTNIG00000011516)	H3-3B (ENSTNIG00000011515)	itgb4 (ENSTNIG00000011514)	sap30bp (ENSTNIG00000011513)	CDR2L (ENSTNIG00000011512)	ENSTNIG00000011511	DAGLB (ENSTNIG00000011510)	SPAG9 (ENSTNIG00000011509) ##22	tob1b (ENSTNIG00000011508)	WFIKKN2 (ENSTNIG00000004170)	ENSTNIG00000004171	ENSTNIG00000005723	bsk146 (ENSTNIG00000004140)	ENSTNIG00000000888	ENSTNIG00000004141	dhrs7cb (ENSTNIG00000006858)	hs3st3l (ENSTNIG00000006859) ##32	ENSTNIG00000006860	ENSTNIG00000006861	PTS (ENSTNIG00000006862)	ENSTNIG00000000035	ENSTNIG00000006863	ENSTNIG00000006864
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00510000049652 #12	ENSGT01100000263504.a.b.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00950000182977.B.b.b.a	ENSGT00950000182977.B.b.b.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.a	ENSGT01030000235280	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000158269.f.a	ENSGT00940000167859	ENSGT00730000111333.b	ENSGT00390000008566.b	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000155133.a.a.b	ENSGT00940000157214.f.a
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.a.a	ENSGT01030000235280	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000158269.f.a	ENSGT00940000167859	ENSGT00730000111333.b	ENSGT00390000008566.b	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000155133.a.a.b	ENSGT00940000157214.f.a	ENSGT00940000159802	ENSGT00390000014726.c.b
Climbing perch	MODERN SPECIES	10	ENSATEG00000004098	mrpl38 (ENSATEG00000004146)	ENSATEG00000004155	wbp2 (ENSATEG00000004186)	UNC13D (ENSATEG00000004200)	UNK (ENSATEG00000004212)	ENSATEG00000004222	ENSATEG00000004239	zgc:194990 (ENSATEG00000004306)	ITGB4 (ENSATEG00000004350)	sap30bp (ENSATEG00000005071)	ENSATEG00000005077	ENSATEG00000005111	ENSATEG00000005139	ENSATEG00000005157	ENSATEG00000005171 ##22	tob1b (ENSATEG00000005289)	ENSATEG00000005297	ENSATEG00000005315	sox9a (ENSATEG00000005539)	ENSATEG00000005578	ENSATEG00000005704	VSTM4 (ENSATEG00000005716)	LRRC18 (ENSATEG00000005764)	ARHGAP22 (ENSATEG00000005797)	mapk8b (ENSATEG00000005885)	ENSATEG00000005950	gdf10b (ENSATEG00000005975)	gdf2 (ENSATEG00000005979)	RBP3 (ENSATEG00000005990)	ENSATEG00000006091
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000021028	ctsk (ENSBSLG00000020953)	ctsk (ENSBSLG00000020365)	ctsk (ENSBSLG00000020057)	ENSBSLG00000019967	ctsk (ENSBSLG00000019131)	ctsk (ENSBSLG00000018810)	zgc:194990 (ENSBSLG00000018749)	itgb4 (ENSBSLG00000016216)	sap30bp (ENSBSLG00000016140)	ENSBSLG00000016135	CDR2L (ENSBSLG00000016127)	mrpl58 (ENSBSLG00000016125)	DAGLB (ENSBSLG00000015948)	ENSBSLG00000015935	SPAG9 (ENSBSLG00000014233) ##22	tob1b (ENSBSLG00000014037)	ENSBSLG00000013699	ENSBSLG00000005961	ENSBSLG00000005109	sox9a (ENSBSLG00000004990)	ENSBSLG00000004938	VSTM4 (ENSBSLG00000024217)	LRRC18 (ENSBSLG00000024213)	ARHGAP22 (ENSBSLG00000024194)	mapk8b (ENSBSLG00000023946)	gdf10b (ENSBSLG00000023730)	gdf2 (ENSBSLG00000023702)	rbp3 (ENSBSLG00000023698)	ENSBSLG00000023685	ubtd1b (ENSBSLG00000023681)
Zig-zag eel	MODERN SPECIES	10	mrpl38 (ENSMAMG00000001244)	ENSMAMG00000025956	wbp2 (ENSMAMG00000001263)	UNC13D (ENSMAMG00000001366)	UNK (ENSMAMG00000001390)	H3-3B (ENSMAMG00000001406)	ENSMAMG00000001431	zgc:194990 (ENSMAMG00000001460)	ITGB4 (ENSMAMG00000001518)	sap30bp (ENSMAMG00000001961)	ENSMAMG00000002023	ENSMAMG00000002040	ENSMAMG00000002203	ENSMAMG00000002209	ENSMAMG00000002222	ENSMAMG00000002258 ##22	tob1b (ENSMAMG00000002402)	ENSMAMG00000002431	ENSMAMG00000002449	ENSMAMG00000002578	ENSMAMG00000002607	sox9a (ENSMAMG00000002653)	ENSMAMG00000002675	ENSMAMG00000002711	VSTM4 (ENSMAMG00000002719)	LRRC18 (ENSMAMG00000002794)	ARHGAP22 (ENSMAMG00000002805)	mapk8b (ENSMAMG00000002853)	ENSMAMG00000026460	gdf10b (ENSMAMG00000002975)	gdf2 (ENSMAMG00000002988)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00510000049652 #12	ENSGT01100000263504.a.b.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000177816	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000154744.a.b	ENSGT00390000014667	ENSGT00940000157240	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.a	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT01040000242314	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900.v	ENSGT00940000177816	ENSGT00940000164900.u	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127
Greater amberjack	MODERN SPECIES	27	map2k4b (ENSSDUG00000012522)	adprm (ENSSDUG00000012506)	RSPH1 (ENSSDUG00000012484)	UNC13D (ENSSDUG00000012409)	unk (ENSSDUG00000012373)	ENSSDUG00000012182	ENSSDUG00000012157	zgc:194990 (ENSSDUG00000012130)	itgb4 (ENSSDUG00000011684)	sap30bp (ENSSDUG00000011609)	ENSSDUG00000011589	CDR2L (ENSSDUG00000011575)	mrpl58 (ENSSDUG00000011564)	DAGLB (ENSSDUG00000011548)	ENSSDUG00000011535	SPAG9 (ENSSDUG00000011433) ##22	tob1b (ENSSDUG00000011420)	ENSSDUG00000011409	ENSSDUG00000011362	ENSSDUG00000011217	ENSSDUG00000011136	ENSSDUG00000011030	ENSSDUG00000010793	bsk146 (ENSSDUG00000010751)	ENSSDUG00000010735	ENSSDUG00000010548	dhrs7cb (ENSSDUG00000010511)	ENSSDUG00000010503	hs3st3l (ENSSDUG00000010484) ##32	GSG1L2 (ENSSDUG00000010453)	GLP2R (ENSSDUG00000010384)
Yellowtail amberjack	MODERN SPECIES	3045	map2k4b (ENSSLDG00000002355)	adprm (ENSSLDG00000002337)	ENSSLDG00000002261	UNC13D (ENSSLDG00000002162)	unk (ENSSLDG00000001990)	ENSSLDG00000001959	ENSSLDG00000001931	zgc:194990 (ENSSLDG00000001901)	itgb4 (ENSSLDG00000001800)	sap30bp (ENSSLDG00000001739)	ENSSLDG00000001718	CDR2L (ENSSLDG00000001656)	mrpl58 (ENSSLDG00000001648)	DAGLB (ENSSLDG00000001516)	ENSSLDG00000001494	SPAG9 (ENSSLDG00000001384) ##22	tob1b (ENSSLDG00000001362)
Barramundi perch	MODERN SPECIES	122				FDXR (ENSLCAG00010022375)	mrpl38 (ENSLCAG00010022367)	ENSLCAG00010022364	wbp2 (ENSLCAG00010022361)	unk (ENSLCAG00010022350)	zgc:194990 (ENSLCAG00010022341)	itgb4 (ENSLCAG00010022035)	sap30bp (ENSLCAG00010021949)	ENSLCAG00010021937	CDR2L (ENSLCAG00010021926)	MRPL58 (ENSLCAG00010021921)	DAGLB (ENSLCAG00010021903)	SPAG9 (ENSLCAG00010021346) ##22	tob1b (ENSLCAG00010021251)	ENSLCAG00010021249	ENSLCAG00010021247	dpf2l (ENSLCAG00010021243)	ENSLCAG00010021241	ttc9c (ENSLCAG00010021240)	ENSLCAG00010021239	ENSLCAG00010021237	ehd1a (ENSLCAG00010021229)	ubxn1 (ENSLCAG00010021224)	ENSLCAG00010021219	GANAB (ENSLCAG00010020564)	INTS5 (ENSLCAG00010020476)	ENSLCAG00010020475	ENSLCAG00010020473
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00390000013574	ENSGT00900000141125	ENSGT00940000162951	ENSGT00530000063718.a.a	ENSGT00730000110939.b	ENSGT00940000159360	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000167259	ENSGT00940000163587.a.b.a.c.b	ENSGT01100000263555.b	ENSGT00390000007870	ENSGT00940000176223	ENSGT00390000018570.b.a	ENSGT00940000167542	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752
Turbot	MODERN SPECIES	9	ENSSMAG00000027457	mrpl38 (ENSSMAG00000004111)	ENSSMAG00000004084	wbp2 (ENSSMAG00000004060)	UNC13D (ENSSMAG00000003895)	UNK (ENSSMAG00000003871)	ENSSMAG00000029598	ENSSMAG00000003851	zgc:194990 (ENSSMAG00000003804)	ITGB4 (ENSSMAG00000003701)	sap30bp (ENSSMAG00000003669)	ENSSMAG00000003659	ENSSMAG00000003650	ENSSMAG00000003640	ENSSMAG00000003614	ENSSMAG00000003529 ##22	tob1b (ENSSMAG00000003500)	ENSSMAG00000003480	ENSSMAG00000003304	ENSSMAG00000003278	ENSSMAG00000003267	ENSSMAG00000003259	sult2st2 (ENSSMAG00000003231)	bsk146 (ENSSMAG00000003142)	ENSSMAG00000003114	ENSSMAG00000003019	dhrs7cb (ENSSMAG00000002981)	hs3st3l (ENSSMAG00000002973) ##32	ENSSMAG00000002963	GLP2R (ENSSMAG00000002937)	ENSSMAG00000035692
Tongue sole	MODERN SPECIES	18	pgp (ENSCSEG00000000945)	zdhhc4 (ENSCSEG00000000947)	grid2ipb (ENSCSEG00000000952)	ENSCSEG00000000964	ENSCSEG00000000976	lcmt1 (ENSCSEG00000000983)	aqp8a.1 (ENSCSEG00000000989)	ENSCSEG00000000995	hbae5 (ENSCSEG00000001002)	ENSCSEG00000001010	HBE1 (ENSCSEG00000001017)	ENSCSEG00000001190	ENSCSEG00000001193	hbae4 (ENSCSEG00000001195)	DAGLB (ENSCSEG00000001216)	SPAG9 (ENSCSEG00000001227) ##22	noc3l (ENSCSEG00000001257)	ENSCSEG00000001265	ch25h (ENSCSEG00000001266)	acta2 (ENSCSEG00000001272)	GRID1 (ENSCSEG00000001285)	ENSCSEG00000001297	cep131 (ENSCSEG00000001305)	ENSCSEG00000001330	ENSCSEG00000001347	ENSCSEG00000001364	ENSCSEG00000001366	asb3 (ENSCSEG00000001371)	asb3 (ENSCSEG00000001375)	ABCA5 (ENSCSEG00000001382)	CHMP6 (ENSCSEG00000001419)
Osteoglossiformes	ANCESTRAL SPECIES	7	ENSGT00940000153500.a.a.w.b	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00950000182957.a.a.a	ENSGT00390000004010.a.b.a.a	ENSGT00940000156486	ENSGT00940000153496.a.b.a ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b.b	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT01090000260189	ENSGT00940000157100.a	ENSGT00940000154768.A.b ##32	ENSGT01050000244814.a.b.a	ENSGT00940000158127
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015022180	CYTH3 (ENSSFOG00015024854)	ENSSFOG00015026012	ENSSFOG00015031139	ENSSFOG00015022230	crym (ENSSFOG00015022241)	snu13b (ENSSFOG00015022251)	mosmob (ENSSFOG00015022257)	eef2k (ENSSFOG00015022269)	polr3e (ENSSFOG00015022338)	CDR2 (ENSSFOG00015022362)	mettl9 (ENSSFOG00015022371)	ENSSFOG00015022393	kdelr2a (ENSSFOG00015026299)	DAGLB (ENSSFOG00015022447)	SPAG9 (ENSSFOG00015022470) ##22	tob1b (ENSSFOG00015022538)	WFIKKN2 (ENSSFOG00015022560)	ANKRD40 (ENSSFOG00015022567)	luc7l3 (ENSSFOG00015022582)	ENSSFOG00015022615	ENSSFOG00015022749	ENSSFOG00015022829	bsk146 (ENSSFOG00015027114)	ENSSFOG00015022887	ENSSFOG00015022930	dhrs7cb (ENSSFOG00015023008)	hs3st3l (ENSSFOG00015019337) ##32	ENSSFOG00015023022	ENSSFOG00015028289	ENSSFOG00015023032
P. kingsleyae	MODERN SPECIES	262	PMS2 (ENSPKIG00000008483)	ENSPKIG00000008458	ENSPKIG00000008385	CYTH3 (ENSPKIG00000008227)	rac1a (ENSPKIG00000008126)	crym (ENSPKIG00000008078)	snu13b (ENSPKIG00000008062)	MOSMO (ENSPKIG00000008046)	eef2k (ENSPKIG00000007928)	polr3e (ENSPKIG00000007836)	CDR2 (ENSPKIG00000007809)	mettl9 (ENSPKIG00000007788)	ENSPKIG00000007742	kdelr2a (ENSPKIG00000007721)	DAGLB (ENSPKIG00000007674)	SPAG9 (ENSPKIG00000007388) ##22	tob1b (ENSPKIG00000007266)	WFIKKN2 (ENSPKIG00000007249)	ANKRD40 (ENSPKIG00000007226)	LUC7L3 (ENSPKIG00000007180)	ENSPKIG00000007005	ENSPKIG00000006798	ENSPKIG00000006678	bsk146 (ENSPKIG00000006642)	ENSPKIG00000006622	ENSPKIG00000006439	ENSPKIG00000006366	dhrs7cb (ENSPKIG00000006346)	hs3st3l (ENSPKIG00000006332) ##32	ENSPKIG00000006320
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b.b ##22
Clupeocephala	ANCESTRAL SPECIES	376										ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000014131	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000164726.a
Otomorpha	ANCESTRAL SPECIES	456											ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.e	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000160624	ENSGT00940000158031.d	ENSGT00390000007792
Clupeiformes	ANCESTRAL SPECIES	17	ENSGT00950000183144.B	ENSGT00940000157700.d	ENSGT00530000063000.a.a.b.i	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a.e	ENSGT00940000175471	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000164726.a	ENSGT00950000183213.a.b	ENSGT00940000165096.b.a	ENSGT00940000156922.b.b	ENSGT00940000164958.b	ENSGT00940000155556.c	ENSGT00940000157100.b	ENSGT00390000014840.b	ENSGT01050000244814.a.b.b	ENSGT00940000166074.A	ENSGT00940000156268.a.b	ENSGT00940000162543
Denticle herring	MODERN SPECIES	17	hook2 (ENSDCDG00000004051)	junba (ENSDCDG00000004036)	rtbdn (ENSDCDG00000004034)	MAST1 (ENSDCDG00000003154)	ATG4D (ENSDCDG00000002884)	ENSDCDG00000024261	smarca4a (ENSDCDG00000024187)	ldlra (ENSDCDG00000023175)	kri1 (ENSDCDG00000023148)	ENSDCDG00000023145	SDR42E2 (ENSDCDG00000023140)	CDR2 (ENSDCDG00000023138)	mfsd13al (ENSDCDG00000023137)	kdelr2a (ENSDCDG00000023136)	ENSDCDG00000023135	spag9a (ENSDCDG00000022986) ##22	tob1b (ENSDCDG00000022972)	ENSDCDG00000022969	WFIKKN1 (ENSDCDG00000022967)	ANKRD40 (ENSDCDG00000022965)	radil2a (ENSDCDG00000022960)	luc7l3 (ENSDCDG00000022958)	ENSDCDG00000022955	ENSDCDG00000022936	GSG1L2 (ENSDCDG00000022933)	rcvrna (ENSDCDG00000022931)	gas7a (ENSDCDG00000022624)	sco1 (ENSDCDG00000022610)	PRPSAP1 (ENSDCDG00000022403)	ENSDCDG00000022397	MGAT5B (ENSDCDG00000022275)
Atlantic herring	MODERN SPECIES		SLC25A10 (ENSCHAG00000000262)	ENSCHAG00000000304	EPN3 (ENSCHAG00000000475)	arl16 (ENSCHAG00000000506)	fn3krp (ENSCHAG00000000540)	TBCD (ENSCHAG00000001456)	znf750 (ENSCHAG00000006033)	metrnla (ENSCHAG00000006054)	atp5pd (ENSCHAG00000006065)	ENSCHAG00000006079	SLC16A5 (ENSCHAG00000006108)	ACSF2 (ENSCHAG00000006145)	ndel1b (ENSCHAG00000008479)	kdelr2a (ENSCHAG00000008534)	ENSCHAG00000008576	spag9a (ENSCHAG00000008674) ##22	tob1a (ENSCHAG00000012937)	ENSCHAG00000012944	ANKRD40 (ENSCHAG00000012947)	radil2a (ENSCHAG00000012952)	luc7l3 (ENSCHAG00000012964)	ENSCHAG00000013191	ENSCHAG00000013210	ENSCHAG00000013217	ENSCHAG00000013234	dhrs7ca (ENSCHAG00000013254)	ENSCHAG00000013261	ENSCHAG00000013272 ##32	ENSCHAG00000013343	rcvrna (ENSCHAG00000013380)	gas7a (ENSCHAG00000013404)
Otophysi	ANCESTRAL SPECIES	8	ENSGT00940000153514.a.a	ENSGT00940000161924	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00940000165237.b.a	ENSGT00940000154768.B #32	ENSGT00510000047678.b #33	ENSGT00940000164352.b.s	ENSGT00990000204633	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.e	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Characiphysae	ANCESTRAL SPECIES	33	ENSGT00940000153514.a.a	ENSGT00940000161924	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00940000165237.b.a	ENSGT00940000154768.B #32	ENSGT00510000047678.b #33	ENSGT00940000164352.b.s	ENSGT00990000204633	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.e	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000160624	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000156865.b	ENSGT00440000038745.a.a.b	ENSGT00530000063599.A	ENSGT00530000063753.A.b	ENSGT00940000153882.a.b.a	ENSGT00940000158772.b	ENSGT00940000154272.B.b	ENSGT00940000155738	ENSGT00940000154830.c	ENSGT01050000244891.E.a.b	ENSGT00940000155563.k.a.a
Channel catfish	MODERN SPECIES	11	ENSIPUG00000005420	e4f1 (ENSIPUG00000005379)	zgc:113333 (ENSIPUG00000005348)	haghl (ENSIPUG00000005298)	narfl (ENSIPUG00000005263)	hagh (ENSIPUG00000005230) #29	Fahd1 (ENSIPUG00000005222) #30	hs3st6 (ENSIPUG00000005215)	msrb1a (ENSIPUG00000005193) #33	ENSIPUG00000005171	ENSIPUG00000005160 #34	ndufb10 (ENSIPUG00000005055) #35	ENSIPUG00000005045	kdelr2a (ENSIPUG00000004993)	tmem159 (ENSIPUG00000004969)	spag9a (ENSIPUG00000004752) ##22	tob1a (ENSIPUG00000004705)	spc24 (ENSIPUG00000004670)	s1pr5a (ENSIPUG00000004663)	foxd7 (ENSIPUG00000004646)	si:dkeyp-69e1.8 (ENSIPUG00000004642)	HMGXB4 (ENSIPUG00000004613)	ankrd54 (ENSIPUG00000004592)	foxred2 (ENSIPUG00000004540)	hmox1 (ENSIPUG00000004527)	mcm5 (ENSIPUG00000004465)	GCAT (ENSIPUG00000004446)	radil2a (ENSIPUG00000004427)	luc7l3 (ENSIPUG00000004396)	sbk1 (ENSIPUG00000004379)	atp5pd (ENSIPUG00000004307)
Characiphysae_b	ANCESTRAL SPECIES	24	ENSGT00940000161924	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00940000165237.b.a	ENSGT00940000154768.B #32	ENSGT00510000047678.b #33	ENSGT00940000164352.b.t	ENSGT00940000164352.b.s	ENSGT00990000204633	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00940000153095	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.e	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00940000160624	ENSGT00390000007792	ENSGT00940000156865.b	ENSGT00440000038745.a.a.b	ENSGT00530000063599.A	ENSGT00530000063753.A.b	ENSGT00940000153882.a.b.a	ENSGT00940000158772.b	ENSGT00940000154272.B.b	ENSGT00940000155738	ENSGT00940000154830.c	ENSGT01050000244891.E.a.b	ENSGT00940000155563.k.a.a
Characoidei	ANCESTRAL SPECIES	97	ENSGT00940000153514.a.a	ENSGT00940000161924	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00940000165237.b.a	ENSGT00940000154768.B #32	ENSGT00510000047678.b #33	ENSGT00940000164352.b.t	ENSGT00940000164352.b.s	ENSGT00990000204633	ENSGT00390000017606.a.b #34	ENSGT00390000006348 #35	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.e	ENSGT00990000204948	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Red-bellied piranha	MODERN SPECIES	114	HAGHL (ENSPNAG00000025703)	hagh (ENSPNAG00000025755) #29	fahd1 (ENSPNAG00000025781) #30	ENSPNAG00000006607	msrb1a (ENSPNAG00000025806) #33	ENSPNAG00000025822	ENSPNAG00000025860	ENSPNAG00000025907	RPL3L (ENSPNAG00000003989) #34	ndufb10 (ENSPNAG00000003993) #35	rps2 (ENSPNAG00000026023)	RNF151 (ENSPNAG00000026039)	ENSPNAG00000026055	kdelr2a (ENSPNAG00000026065)	ENSPNAG00000026081	spag9a (ENSPNAG00000026592) ##22	tob1a (ENSPNAG00000026676)	ENSPNAG00000026681
Mexicana tetra	MODERN SPECIES	82				HS3ST6 (ENSAMXG00000041251) #32	msrb1a (ENSAMXG00000019701) #33	ENSAMXG00000033531	ENSAMXG00000029765	ENSAMXG00000029144	RPL3L (ENSAMXG00000001115) #34	rps2 (ENSAMXG00000037370)	ndufb10 (ENSAMXG00000036781) #35	ENSAMXG00000032231	ENSAMXG00000028661	kdelr2a (ENSAMXG00000043587)	ENSAMXG00000031592	spag9a (ENSAMXG00000035239) ##22	tob1a (ENSAMXG00000025998)
Electric eel	MODERN SPECIES	68	e4f1 (ENSEEEG00000004667)	zgc:113333 (ENSEEEG00000004666)	narfl (ENSEEEG00000004660)	HAGHL (ENSEEEG00000004657)	hagh (ENSEEEG00000004550) #29	fahd1 (ENSEEEG00000004543) #30	ENSEEEG00000004542	msrb1a (ENSEEEG00000004539) #33	ENSEEEG00000004538	ENSEEEG00000004537	RPL3L (ENSEEEG00000004533) #34	ndufb10 (ENSEEEG00000004530) #35	rps2 (ENSEEEG00000004527)	kdelr2a (ENSEEEG00000004523)	ENSEEEG00000004522	spag9a (ENSEEEG00000004518) ##22	tob1a (ENSEEEG00000004516)	WFIKKN2 (ENSEEEG00000004515)	ANKRD40 (ENSEEEG00000004513)	ENSEEEG00000004511	zgc:171844 (ENSEEEG00000004510)	mfsd6l (ENSEEEG00000004509)	ENSEEEG00000004505	ntn1b (ENSEEEG00000004496)	ENSEEEG00000004492	ENSEEEG00000004490
Cyprinoidei	ANCESTRAL SPECIES	77	ENSGT00940000165638.a.a	ENSGT00940000156201.a.b.a	ENSGT00940000157690	ENSGT00940000157625.a.a	ENSGT01030000235046	ENSGT00840000129970	ENSGT00390000014852.b	ENSGT00940000153514.a.a	ENSGT00940000159176 #29	ENSGT00940000160452 #30	ENSGT00510000047678.b #33	ENSGT00390000006348 #35	ENSGT00940000153095	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.e	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00390000010750.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	56	ENSGT00940000160081.c.b.b	ENSGT00940000158476.b.b	ENSGT00940000165638.a.a.b	ENSGT00940000156201.a.b.a.b	ENSGT00940000157625.a.a.a	ENSGT00840000129970.a	ENSGT00390000014852.b.b	ENSGT00940000153514.a.a	ENSGT00940000159176.h #29	ENSGT00940000160452.g #30	ENSGT00390000006348 #35	ENSGT00940000153095.e.a	ENSGT00390000004010.a.b.a.a.e.b	ENSGT00940000153095.f	ENSGT00390000004010.a.b.a.a.e.a.a	ENSGT00940000153496.a.b.b.a ##22	ENSGT00940000154208.c.a.a	ENSGT00940000158031.d.b	ENSGT00390000007792.a	ENSGT00390000010750.a.m	ENSGT00390000011216.a	ENSGT00940000165021.a.a	ENSGT00940000158217.a.a.e	ENSGT01050000244814.a.b.b.c	ENSGT00940000166074.A.b	ENSGT00940000156268.a.b.e.b	ENSGT00940000157651.a #37	ENSGT00940000158812.j.b.c	ENSGT00500000044930.f.a	ENSGT00940000159298	ENSGT00940000156940.a.b.a.a
Goldfish	MODERN SPECIES	20	TMEM104 (ENSCARG00000017021)	tnpo2a (ENSCARG00000016894)	GAA (ENSCARG00000016425)	tbc1d16 (ENSCARG00000016367)	cbx4 (ENSCARG00000016344)	cbx8a (ENSCARG00000016326)	ENSCARG00000015792	GRID2IP (ENSCARG00000015710)	e4f1 (ENSCARG00000015677)	zgc:113333 (ENSCARG00000015651)	hagh (ENSCARG00000015462) #29	fahd1 (ENSCARG00000015455) #30	ndufb10 (ENSCARG00000015423) #35	rps2 (ENSCARG00000015397)	kdelr2a (ENSCARG00000015383)	spag9a (ENSCARG00000007953) ##22	tob1a (ENSCARG00000007737)	ENSCARG00000007731	ENSCARG00000007710	ENSCARG00000007698	mettl26 (ENSCARG00000007686)	rsad1 (ENSCARG00000007647)	rasd2a (ENSCARG00000007641)	ENSCARG00000007620	arl16 (ENSCARG00000007609)	ENSCARG00000007605	ENSCARG00000007600	ENSCARG00000007594	ENSCARG00000007585	rcvrna (ENSCARG00000007577)	gas7a (ENSCARG00000007263)
Cyprininae_a	ANCESTRAL SPECIES	12	ENSGT00940000160081.c.b.b	ENSGT00940000158476.b.b	ENSGT00940000165638.a.a.b	ENSGT00940000156201.a.b.a.b	ENSGT00940000157625.a.a.a	ENSGT00840000129970.a	ENSGT00390000014852.b.b	ENSGT00940000153514.a.a	ENSGT00940000159176.h #29	ENSGT00940000160452.g #30	ENSGT00390000006348 #35	ENSGT00940000153095.e.a	ENSGT00390000004010.a.b.a.a.e.b	ENSGT00940000153095.f	ENSGT00390000004010.a.b.a.a.e.a.a	ENSGT00940000153496.a.b.b.a ##22	ENSGT00940000154208.c.a.a	ENSGT00940000158031.d.b	ENSGT00390000007792.a	ENSGT00390000010750.a.m	ENSGT00390000011216.a	ENSGT00940000165021.a.a	ENSGT00940000158217.a.a.e	ENSGT01050000244814.a.b.b.c	ENSGT00940000166074.A.b	ENSGT00940000156268.a.b.e.b	ENSGT00940000157651.a #37	ENSGT00940000158812.j.b.c	ENSGT00500000044930.f.a	ENSGT00940000159298	ENSGT00940000156940.a.b.a.a
Common carp reference	MODERN SPECIES	1	cbx4 (ENSCCRG00000067339)	cbx8a (ENSCCRG00000070578)	aqp8b (ENSCCRG00000036138)	ENSCCRG00000036125	ENSCCRG00000036117	e4f1 (ENSCCRG00000029009)	zgc:113333 (ENSCCRG00000038612)	ENSCCRG00000064945	ENSCCRG00000061876	narfl (ENSCCRG00000029014)	hagh (ENSCCRG00000033968) #29	fahd1 (ENSCCRG00000068027) #30	ndufb10 (ENSCCRG00000033898) #35	rps2 (ENSCCRG00000077716)	kdelr2a (ENSCCRG00000043606)	spag9a (ENSCCRG00000034081) ##22	tob1a (ENSCCRG00000067410)	ENSCCRG00000064515	ENSCCRG00000069434	ENSCCRG00000032438	mettl26 (ENSCCRG00000069114)	ENSCCRG00000032423	rasd2a (ENSCCRG00000032416)	ENSCCRG00000032406	ENSCCRG00000071329	ENSCCRG00000072409	ENSCCRG00000057878	ENSCCRG00000036838	ENSCCRG00000030210	ENSCCRG00000059044	ENSCCRG00000033016
Golden-line barbel	MODERN SPECIES	541									narfl (ENSSGRG00000030771)	hagh (ENSSGRG00000030783) #29	fahd1 (ENSSGRG00000030785) #30	msrb1a (ENSSGRG00000030787) #33	ndufb10 (ENSSGRG00000030788) #35	rps2 (ENSSGRG00000030804)	kdelr2a (ENSSGRG00000031317)	spag9a (ENSSGRG00000031325) ##22	tob1a (ENSSGRG00000032506)	ENSSGRG00000032507	ENSSGRG00000032508	mettl26 (ENSSGRG00000032509)	rsad1 (ENSSGRG00000032510)	ENSSGRG00000032512	arl16 (ENSSGRG00000032513)	ENSSGRG00000032515	rcvrna (ENSSGRG00000032516)	gas7a (ENSSGRG00000032518)	ENSSGRG00000032520	ENSSGRG00000032522	ENSSGRG00000032524	tbl3 (ENSSGRG00000032535) #37	ENSSGRG00000032845
Cyprininae	ANCESTRAL SPECIES	73	ENSGT00940000160081.c.b.a	ENSGT00940000158476.b.a	ENSGT00940000165638.a.a.a	ENSGT00940000156201.a.b.a.a	ENSGT00940000157690	ENSGT00940000157625.a.a.b	ENSGT01030000235046	ENSGT00840000129970.b	ENSGT00390000014852.b.a	ENSGT00940000159176.g #29	ENSGT00940000160452.h #30	ENSGT00510000047678.b #33	ENSGT00940000153095.e.b	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.e.a.b	ENSGT00940000153496.a.b.b.b ##22	ENSGT00940000154208.c.a.b	ENSGT00940000158031.d.a	ENSGT00390000007792.b	ENSGT00390000010750.a.n	ENSGT00390000011216.b	ENSGT00940000165021.a.b	ENSGT00940000158217.a.a.f	ENSGT00940000167007	ENSGT00730000111327	ENSGT00940000165634.b.f	ENSGT00940000165634.a.a.s	ENSGT00940000177162.a.f	ENSGT00940000177162.b	ENSGT01050000244814.a.b.b.d	ENSGT00940000166074.A.a
Cyprininae_a	ANCESTRAL SPECIES	93	ENSGT00940000158541.b	ENSGT00940000160081.c.b.a	ENSGT00940000158476.b.a	ENSGT00940000165638.a.a.a	ENSGT00940000156201.a.b.a.a	ENSGT00940000157690	ENSGT00940000157625.a.a.b	ENSGT01030000235046	ENSGT00840000129970.b	ENSGT00390000014852.b.a	ENSGT00940000159176.g #29	ENSGT00940000160452.h #30	ENSGT00510000047678.b #33	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.e.a.b	ENSGT00940000153496.a.b.b.b ##22	ENSGT00940000154208.c.a.b	ENSGT00940000158031.d.a	ENSGT00390000007792.b	ENSGT00390000010750.a.n	ENSGT00390000011216.b	ENSGT00940000165021.a.b	ENSGT00940000158217.a.a.f	ENSGT00940000167007	ENSGT00730000111327	ENSGT00940000165634.b.f	ENSGT00940000165634.a.a.s	ENSGT00940000177162.b	ENSGT01050000244814.a.b.b.d	ENSGT00940000166074.A.a	ENSGT00940000156268.a.b.e.a.a
Common carp reference	MODERN SPECIES	3	tbc1d16 (ENSCCRG00000047509)	cbx4 (ENSCCRG00000058350)	ENSCCRG00000036111	cbx8a (ENSCCRG00000073016)	aqp8b (ENSCCRG00000039607)	ENSCCRG00000046269	slc5a11 (ENSCCRG00000046398)	ENSCCRG00000081625	zgc:113333 (ENSCCRG00000036100)	hagh (ENSCCRG00000078582) #29	fahd1 (ENSCCRG00000055581) #30	msrb1a (ENSCCRG00000062415) #33	ENSCCRG00000043596	ENSCCRG00000036086	kdelr2a (ENSCCRG00000036081)	spag9a (ENSCCRG00000045764) ##22	tob1a (ENSCCRG00000060744)	ENSCCRG00000068323	ENSCCRG00000076437	ENSCCRG00000082711	mettl26 (ENSCCRG00000032432)	ENSCCRG00000069939	ENSCCRG00000030225	ENSCCRG00000065237	ENSCCRG00000081424	ENSCCRG00000004430	ENSCCRG00000078041	ENSCCRG00000004473	ENSCCRG00000034563	gas7a (ENSCCRG00000053192)	ENSCCRG00000054054
Golden-line barbel	MODERN SPECIES	4		ENSSGRG00000030694	slc5a11 (ENSSGRG00000030695)	GRID2IP (ENSSGRG00000030726)	ENSSGRG00000030727	e4f1 (ENSSGRG00000030730)	zgc:113333 (ENSSGRG00000030734)	narfl (ENSSGRG00000030737)	hagh (ENSSGRG00000030738) #29	fahd1 (ENSSGRG00000030746) #30	fahd1 (ENSSGRG00000030747) #30	msrb1a (ENSSGRG00000030748) #33	msrb1a (ENSSGRG00000030750) #33	ndufb10 (ENSSGRG00000030752) #35	rps2 (ENSSGRG00000030772)	spag9a (ENSSGRG00000030992) ##22	tob1a (ENSSGRG00000031191)	ENSSGRG00000031194	ENSSGRG00000031197	mettl26 (ENSSGRG00000031198)	rsad1 (ENSSGRG00000031199)	rasd2a (ENSSGRG00000031200)	ENSSGRG00000031201	arl16 (ENSSGRG00000031203)	ENSSGRG00000031204	ENSSGRG00000031206	ENSSGRG00000031208	rcvrna (ENSSGRG00000031209)	gas7a (ENSSGRG00000031211)	ASB2 (ENSSGRG00000031214)	ASB2 (ENSSGRG00000031216)
Goldfish	MODERN SPECIES	22	tnpo2a (ENSCARG00000009157)	cbx4 (ENSCARG00000009243)	cbx8a (ENSCARG00000009252)	aqp8b (ENSCARG00000009266)	ENSCARG00000009381	slc5a11 (ENSCARG00000009864)	GRID2IP (ENSCARG00000009870)	e4f1 (ENSCARG00000009892)	zgc:113333 (ENSCARG00000009905)	hagh (ENSCARG00000009936) #29	fahd1 (ENSCARG00000010447) #30	msrb1a (ENSCARG00000010451) #33	rps2 (ENSCARG00000010460)	ENSCARG00000010527	kdelr2a (ENSCARG00000010538)	spag9a (ENSCARG00000010675) ##22	tob1a (ENSCARG00000013963)	WFIKKN2 (ENSCARG00000013968)	ENSCARG00000013977	rasd2a (ENSCARG00000013985)	ENSCARG00000013996	ENSCARG00000014019	ENSCARG00000014026	ENSCARG00000014033	ENSCARG00000014037	ENSCARG00000014040	ENSCARG00000014045	rcvrna (ENSCARG00000014056)	gas7a (ENSCARG00000014081)	ENSCARG00000014255	ENSCARG00000014258
Zebrafish	MODERN SPECIES	18	e4f1 (ENSDARG00000038243)	GRID2IP (ENSDARG00000076103)	slc5a11 (ENSDARG00000019932)	ENSDARG00000092455	arhgap17b (ENSDARG00000062263)	aqp8b (ENSDARG00000089749)	cbx8a (ENSDARG00000087327)	cbx4 (ENSDARG00000099441)	tbc1d16 (ENSDARG00000036994)	ENSDARG00000090714	GAA (ENSDARG00000116493)	ndufb10 (ENSDARG00000028889) #35	rps2 (ENSDARG00000077291)	ENSDARG00000093074	kdelr2a (ENSDARG00000005254)	spag9a (ENSDARG00000074531) ##22	ENSDARG00000105157	tob1a (ENSDARG00000032619)	ENSDARG00000013460	ANKRD40 (ENSDARG00000076490)	mettl26 (ENSDARG00000027461)	hsd17b1 (ENSDARG00000027469)	si:ch73-141c7.1 (ENSDARG00000009040)	aclya (ENSDARG00000099079)	ENSDARG00000070822	odad4 (ENSDARG00000058140)	dnajc7 (ENSDARG00000058148)	nkiras2 (ENSDARG00000052594)	ENSDARG00000116223	ZNF385C (ENSDARG00000058154)	ENSDARG00000114049
Euteleosteomorpha	ANCESTRAL SPECIES	109	ENSGT00940000160620	ENSGT00940000158959.a.a	ENSGT00940000162806.b.b	ENSGT00610000086173	ENSGT00390000015368.a.a.d	ENSGT00940000157413.g	ENSGT00730000111231	ENSGT00940000158081.o.a	ENSGT00940000153593.f	ENSGT00510000053055	ENSGT00940000177177	ENSGT00940000159994	ENSGT00940000165866	ENSGT00940000163581.f.a	ENSGT00940000160560.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000160624	ENSGT00390000000289	ENSGT00940000161021.a.a	ENSGT00390000013329	ENSGT00390000003821	ENSGT00940000160280.c	ENSGT00940000160580.a	ENSGT00940000154739.B
Acanthomorphata	ANCESTRAL SPECIES	127															ENSGT00940000160560.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B
Tiger tail seahorse	MODERN SPECIES	373	ENSHCOG00000006159	zgc:153240 (ENSHCOG00000006152)	rhot1a (ENSHCOG00000006138)	ENSHCOG00000006093	ENSHCOG00000006085	rfx1a (ENSHCOG00000006033)	ENSHCOG00000005939	ENSHCOG00000005932	ENSHCOG00000005914	ENSHCOG00000005869	dhps (ENSHCOG00000005834)	NHERF2 (ENSHCOG00000005817)	sstr5 (ENSHCOG00000005798)	ENSHCOG00000005760	ENSHCOG00000005753	spag9a (ENSHCOG00000005724) ##22	tob1a (ENSHCOG00000005514)	ENSHCOG00000005509	ANKRD40 (ENSHCOG00000005501)	luc7l3 (ENSHCOG00000000181)	ENSHCOG00000000819	ENSHCOG00000005448	ENSHCOG00000005434	lgals2a (ENSHCOG00000005416)	gtpbp1 (ENSHCOG00000005409)	sgsm3 (ENSHCOG00000000166)	ELFN2 (ENSHCOG00000005366)	ENSHCOG00000005352	ENSHCOG00000005338	gtf2f1 (ENSHCOG00000005324)	alkbh7 (ENSHCOG00000005305)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b
Mangrove rivulus	MODERN SPECIES	61	ENSKMAG00000021236	rfx1a (ENSKMAG00000021241)	rln3a (ENSKMAG00000021259)	ENSKMAG00000021263	ENSKMAG00000021274	ENSKMAG00000000149	ENSKMAG00000000183	dhps (ENSKMAG00000000196)	NHERF2 (ENSKMAG00000000277)	sstr5 (ENSKMAG00000000287)	ENSKMAG00000000297	ENSKMAG00000000310	ENSKMAG00000000319	ENSKMAG00000000325	ENSKMAG00000000369	spag9a (ENSKMAG00000000392) ##22	tob1a (ENSKMAG00000000536)	ENSKMAG00000000550	ANKRD40 (ENSKMAG00000000571)	luc7l3 (ENSKMAG00000000587)	ENSKMAG00000000599	ENSKMAG00000000613	ENSKMAG00000000694	ENSKMAG00000000712	ENSKMAG00000000720	gtpbp1 (ENSKMAG00000000729)	sgsm3 (ENSKMAG00000000824)	ELFN2 (ENSKMAG00000000941)	ENSKMAG00000000982	ENSKMAG00000001012	gtf2f1 (ENSKMAG00000001116)
Turquoise killifish	MODERN SPECIES	1612	sstr5 (ENSNFUG00015010363)	ENSNFUG00015010360	SLC9A3R2 (ENSNFUG00015010352)	dhps (ENSNFUG00015010246)	ENSNFUG00015010222	FBXW9 (ENSNFUG00015010217)	ENSNFUG00015010170	IL12RB2L (ENSNFUG00015010151)	RLN3A (ENSNFUG00015010134)	rfx1a (ENSNFUG00015009098)	FAM195A (ENSNFUG00015008894)	ENSNFUG00015008880	ENSNFUG00015008873	Nfu_g_1_019538 (ENSNFUG00015008868)	ENSNFUG00015008866	SPAG9A (ENSNFUG00015008543) ##22	TOB1 (ENSNFUG00015008514)	ENSNFUG00015008512	ENSNFUG00015008508	ANKRD40 (ENSNFUG00015008504)	LUC7L3 (ENSNFUG00015008466)	ENSNFUG00015008456	ENSNFUG00015008451	ENSNFUG00015008445	ENSNFUG00015004748	ENSNFUG00015004236	ELFN2 (ENSNFUG00015004231)	gtf2f1 (ENSNFUG00015004207)	ALKBH7 (ENSNFUG00015004200)	CACNA1A (ENSNFUG00015003734)	IER2 (ENSNFUG00015003599)
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.b.a.e.b.b	ENSGT00940000162556.E.b.a.e.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000179768	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000162556.E.b.a.e.a.b	ENSGT00940000162556.E.b.a.e.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a.d	ENSGT00940000155366.b.a.a.c	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000179768	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000162556.E.b.a.e.a.b	ENSGT00940000162556.E.b.a.e.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a.d	ENSGT00940000155366.b.a.a.c	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000179768	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
NAME_6	ANCESTRAL SPECIES	124	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000163228.cb	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.k.b	ENSGT00950000182933.B.a.b.b.k.a	ENSGT00940000155366.b.a.a.d	ENSGT00950000182933.B.a.b.b.l	ENSGT00940000155366.b.a.a.c	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT01000000215591	ENSGT00940000155025.B.j	ENSGT00940000179768	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Amazon molly	MODERN SPECIES	392	rln3a (ENSPFOG00000012657)	ENSPFOG00000012652	ENSPFOG00000012466	ENSPFOG00000012452	ENSPFOG00000022052	dhps (ENSPFOG00000012375)	NHERF2 (ENSPFOG00000012348)	hydin (ENSPFOG00000012208)	sstr5 (ENSPFOG00000012182)	ENSPFOG00000020772	ENSPFOG00000012163	ENSPFOG00000012170	ENSPFOG00000022434	ENSPFOG00000022815	ENSPFOG00000012155	spag9a (ENSPFOG00000012040) ##22	tob1a (ENSPFOG00000020771)	ENSPFOG00000020770	ENSPFOG00000012021	ANKRD40 (ENSPFOG00000011995)	ENSPFOG00000011916	ENSPFOG00000023932	ENSPFOG00000011491	ENSPFOG00000022664	lgals2a (ENSPFOG00000011434)	gtpbp1 (ENSPFOG00000011239)	sgsm3 (ENSPFOG00000011117)	ELFN2 (ENSPFOG00000011100)	gtf2f1 (ENSPFOG00000010996)	alkbh7 (ENSPFOG00000010971)	CACNA1A (ENSPFOG00000010106)
Sailfin molly	MODERN SPECIES	507											ENSPLAG00000008859	ENSPLAG00000008865	ENSPLAG00000008875	ENSPLAG00000008902	ENSPLAG00000008907	spag9a (ENSPLAG00000009016) ##22	tob1a (ENSPLAG00000009024)	ENSPLAG00000009034	ANKRD40 (ENSPLAG00000009042)	luc7l3 (ENSPLAG00000009062)	ENSPLAG00000009360
Guppy	MODERN SPECIES	460	llgl1 (ENSPREG00000019964)	flii (ENSPREG00000020017)	desi1a (ENSPREG00000020163)	ENSPREG00000020179	ENSPREG00000020201	ENSPREG00000020237	ENSPREG00000020273	ENSPREG00000020285	ENSPREG00000020324	ENSPREG00000020368	pvalb6 (ENSPREG00000020383)	ENSPREG00000020410	ENSPREG00000020503	ENSPREG00000020524	ENSPREG00000020530	spag9a (ENSPREG00000020589) ##22	tob1a (ENSPREG00000020816)	ENSPREG00000020820	ANKRD40 (ENSPREG00000020830)	ENSPREG00000020837	ENSPREG00000020892	lgals2a (ENSPREG00000000556)	gtpbp1 (ENSPREG00000000559)	sgsm3 (ENSPREG00000000601)	ELFN2 (ENSPREG00000000727)	gtf2f1 (ENSPREG00000000772)	alkbh7 (ENSPREG00000000807)	CACNA1A (ENSPREG00000000841)	ENSPREG00000001014	ENSPREG00000001025	ENSPREG00000001173
Platyfish	MODERN SPECIES	7	ENSXMAG00000023360	ENSXMAG00000022278	rfx1a (ENSXMAG00000014267)	rln3a (ENSXMAG00000014265)	ENSXMAG00000014262	ENSXMAG00000014217	ENSXMAG00000029407	ENSXMAG00000024593	dhps (ENSXMAG00000014181)	NHERF2 (ENSXMAG00000014174)	sstr5 (ENSXMAG00000014160)	ENSXMAG00000020151	ENSXMAG00000009044	ENSXMAG00000009042	ENSXMAG00000024450	spag9a (ENSXMAG00000014104) ##22	tob1a (ENSXMAG00000019792)	ENSXMAG00000014100	ANKRD40 (ENSXMAG00000014096)	luc7l3 (ENSXMAG00000014091)	ENSXMAG00000012146	ENSXMAG00000027905	ENSXMAG00000027385	lgals2a (ENSXMAG00000028581)	ENSXMAG00000021515	gtpbp1 (ENSXMAG00000014069)	sgsm3 (ENSXMAG00000014056)	ELFN2 (ENSXMAG00000014053)	gtf2f1 (ENSXMAG00000014047)	alkbh7 (ENSXMAG00000026783)	CACNA1A (ENSXMAG00000013969)
NAME_4	ANCESTRAL SPECIES	49	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000155025.B.j	ENSGT00940000179768	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a	ENSGT00940000161491.p
Mummichog	MODERN SPECIES	2472													ENSFHEG00000014106	ENSFHEG00000014114	ENSFHEG00000014135	spag9a (ENSFHEG00000014356) ##22	tob1a (ENSFHEG00000014375)	ENSFHEG00000014405	ANKRD40 (ENSFHEG00000014438)	ENSFHEG00000000347	ENSFHEG00000014491	ENSFHEG00000014509	lgals2a (ENSFHEG00000014523)	ENSFHEG00000014540	gtpbp1 (ENSFHEG00000014632)	sgsm3 (ENSFHEG00000014712)	ELFN2 (ENSFHEG00000014734)	gtf2f1 (ENSFHEG00000014800)	alkbh7 (ENSFHEG00000014821)	ENSFHEG00000014948	ENSFHEG00000014964
Sheepshead minnow	MODERN SPECIES	439	rfx1a (ENSCVAG00000002770)	rln3a (ENSCVAG00000002766)	ENSCVAG00000002763	ENSCVAG00000002750	ENSCVAG00000000940	ENSCVAG00000002730	dhps (ENSCVAG00000002725)	NHERF2 (ENSCVAG00000002714)	ENSCVAG00000002709	sstr5 (ENSCVAG00000002705)	ENSCVAG00000002703	ENSCVAG00000002700	ENSCVAG00000002695	ENSCVAG00000002689	ENSCVAG00000002682	spag9a (ENSCVAG00000002675) ##22	tob1a (ENSCVAG00000002658)	ENSCVAG00000002656	ANKRD40 (ENSCVAG00000002654)	luc7l3 (ENSCVAG00000002650)	ENSCVAG00000000078
Oryzias	ANCESTRAL SPECIES		ENSGT00940000162556.D.b.b	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e.p	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.o	ENSGT00950000182933.B.a.b.b.p	ENSGT01030000234810	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.a	ENSGT00940000155025.B.j.b	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT01050000244879.a.b.e.p	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.o	ENSGT00950000182933.B.a.b.b.p	ENSGT01030000234810	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.b.b.a.a.a	ENSGT00940000155025.B.j.b.b.a.a.b	ENSGT00940000155025.B.j.a	ENSGT00940000155025.B.j.b.a.a	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B
Japanese Medaka HdrR	DUPLICATION
Japanese Medaka HdrR	MODERN SPECIES	22	ENSORLG00000010192	ENSORLG00000010214	rfx1a (ENSORLG00000010273)	rln3a (ENSORLG00000027728)	ENSORLG00000026757	ENSORLG00000010363	ENSORLG00000029272	dhps (ENSORLG00000010415)	ENSORLG00000027854	sstr5 (ENSORLG00000010452)	ENSORLG00000027535	ENSORLG00000029028	ENSORLG00000010458	ENSORLG00000029819	ENSORLG00000027081 ##22	ENSORLG00000010577 ##22	tob1a (ENSORLG00000010600)	ENSORLG00000010607	ANKRD40 (ENSORLG00000010622)	luc7l3 (ENSORLG00000010648)	ENSORLG00000026235	ENSORLG00000025069	ENSORLG00000030479	ENSORLG00000026315	ENSORLG00000010700	ENSORLG00000010715	ENSORLG00000010710	ENSORLG00000010697	ENSORLG00000024256	ENSORLG00000022630	sgsm3 (ENSORLG00000010788)
Japanese Medaka HdrR	MODERN SPECIES	22	rhot1a (ENSORLG00000010097)	ENSORLG00000010192	ENSORLG00000010214	rfx1a (ENSORLG00000010273)	rln3a (ENSORLG00000027728)	ENSORLG00000026757	ENSORLG00000010363	ENSORLG00000029272	dhps (ENSORLG00000010415)	ENSORLG00000027854	sstr5 (ENSORLG00000010452)	ENSORLG00000027535	ENSORLG00000029028	ENSORLG00000010458	ENSORLG00000029819	ENSORLG00000027081 ##22	ENSORLG00000010577 ##22	tob1a (ENSORLG00000010600)	ENSORLG00000010607	ANKRD40 (ENSORLG00000010622)	luc7l3 (ENSORLG00000010648)	ENSORLG00000026235	ENSORLG00000025069	ENSORLG00000030479	ENSORLG00000026315	ENSORLG00000010700	ENSORLG00000010715	ENSORLG00000010710	ENSORLG00000010697	ENSORLG00000024256	ENSORLG00000022630
Chinese medaka	MODERN SPECIES	686	rhot1a (ENSOSIG00000015339)	ENSOSIG00000015803	ENSOSIG00000015806	rfx1a (ENSOSIG00000015827)	rln3a (ENSOSIG00000016452)	ENSOSIG00000016455	ENSOSIG00000016459	ENSOSIG00000016483	dhps (ENSOSIG00000016486)	NHERF2 (ENSOSIG00000016492)	sstr5 (ENSOSIG00000016493)	ENSOSIG00000016494	ENSOSIG00000016498	ENSOSIG00000016499	ENSOSIG00000016502	spag9a (ENSOSIG00000016519) ##22	tob1a (ENSOSIG00000016941)	ENSOSIG00000016943	ANKRD40 (ENSOSIG00000016946)	luc7l3 (ENSOSIG00000016951)	ENSOSIG00000016978
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000162556.D.b.b	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e.p	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.o	ENSGT00950000182933.B.a.b.b.p	ENSGT01030000234810	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.a	ENSGT00940000155025.B.j.b	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693	ENSGT00940000159327.u.a
Indian medaka	MODERN SPECIES	9	ENSOMEG00000014605	ENSOMEG00000014687	ENSOMEG00000014731	ENSOMEG00000014738	rfx1a (ENSOMEG00000014767)	rln3a (ENSOMEG00000014778)	ENSOMEG00000014806	ENSOMEG00000014877	dhps (ENSOMEG00000014905)	NHERF2 (ENSOMEG00000014926)	sstr5 (ENSOMEG00000014936)	ENSOMEG00000014953	ENSOMEG00000014971	ENSOMEG00000000374	ENSOMEG00000014998	spag9a (ENSOMEG00000015271) ##22	tob1a (ENSOMEG00000015327)	ENSOMEG00000015354	ANKRD40 (ENSOMEG00000015372)	luc7l3 (ENSOMEG00000015396)	ENSOMEG00000015666	ENSOMEG00000015722	ENSOMEG00000015736	ENSOMEG00000015751	sgsm3 (ENSOMEG00000015879)	ELFN2 (ENSOMEG00000015970)	gtf2f1 (ENSOMEG00000016050)	alkbh7 (ENSOMEG00000016001)	ENSOMEG00000016074	CACNA1A (ENSOMEG00000016125)	ENSOMEG00000016144
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	1792															ENSSPAG00000020417	ENSSPAG00000020378 ##22	spag9a (ENSSPAG00000020346) ##22	tob1a (ENSSPAG00000020334)	ENSSPAG00000020322	ANKRD40 (ENSSPAG00000020308)	luc7l3 (ENSSPAG00000020289)
Bicolor damselfish	MODERN SPECIES	1792														ENSSPAG00000020417	ENSSPAG00000020378 ##22	spag9a (ENSSPAG00000020346) ##22	tob1a (ENSSPAG00000020334)	ENSSPAG00000020322	ANKRD40 (ENSSPAG00000020308)	luc7l3 (ENSSPAG00000020289)
Pomacentridae_A	ANCESTRAL SPECIES	40	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.q	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00900000141021.b.b.e
Amphiprion	ANCESTRAL SPECIES	31	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.q	ENSGT00940000155366.b.a.a.e	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000155366.b.a.a.f	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00900000141021.b.b.e
Orange clownfish	MODERN SPECIES	5	KHSRP (ENSAPEG00000008575)	rfx1a (ENSAPEG00000008546)	rln3a (ENSAPEG00000008528)	ENSAPEG00000008511	ENSAPEG00000008429	ENSAPEG00000008404	ENSAPEG00000008389	dhps (ENSAPEG00000008349)	NHERF2 (ENSAPEG00000008333)	sstr5 (ENSAPEG00000008314)	ENSAPEG00000008296	ENSAPEG00000008284	ENSAPEG00000008276	ENSAPEG00000008261	ENSAPEG00000008248	spag9a (ENSAPEG00000008205) ##22	tob1a (ENSAPEG00000008187)	ENSAPEG00000008172	ANKRD40 (ENSAPEG00000008168)	luc7l3 (ENSAPEG00000008154)	ENSAPEG00000008096	lgals2a (ENSAPEG00000008055)	gtpbp1 (ENSAPEG00000008015)	sgsm3 (ENSAPEG00000007945)	ELFN2 (ENSAPEG00000007928)	ENSAPEG00000007786	ENSAPEG00000007758	gtf2f1 (ENSAPEG00000007714)	alkbh7 (ENSAPEG00000007685)	CACNA1A (ENSAPEG00000007549)	ENSAPEG00000007534
Clown anemonefish	MODERN SPECIES	2832													ENSAOCG00000017008	ENSAOCG00000016980	ENSAOCG00000016943	spag9a (ENSAOCG00000016904) ##22
Spiny chromis	MODERN SPECIES	1495															ENSAPOG00000023169	spag9a (ENSAPOG00000023128) ##22	tob1a (ENSAPOG00000023040)
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.h.b	ENSGT00940000155025.B.j.h.a.a	ENSGT00940000155025.B.j.g	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.o	ENSGT00940000177484	ENSGT00940000163334.d.p	ENSGT00440000038032
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.h.b	ENSGT00940000155025.B.j.h.a.b	ENSGT00940000155025.B.j.h.a.a	ENSGT00940000155025.B.j.g	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.o	ENSGT00940000177484.b	ENSGT00940000163334.d.p
Haplochromini	DUPLICATION
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	283															ENSGT00940000160560.b.f.a.b.a.a.a.a.b	ENSGT00940000153496.a.b.b.g.a ##22
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000159737.d	ENSGT00940000157282	ENSGT00940000156054.c.a	ENSGT00940000155025.B.j.g	ENSGT00940000155025.B.j.h.a.a	ENSGT00940000155025.B.j.h.a.b	ENSGT00940000155025.B.j.h.b	ENSGT00940000158594	ENSGT00950000183213.a.b	ENSGT00390000007792	ENSGT00940000158031.d	ENSGT00940000154208.c.a	ENSGT00940000153496.a.b.b.h ##22	ENSGT00940000160560.b.f.a.b.a.a.a.a.a	ENSGT00940000160560.b.f.a.b.a.a.a.a.b	ENSGT00940000153496.a.b.b.g.a ##22	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00390000008063.k.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000006806	ENSGT00940000156708.a.b	ENSGT00940000155603.B	ENSGT00940000154396.b.a.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000156051.c.a.a	ENSGT00940000162556.D.b.b
P. nyererei	MODERN SPECIES	354	rfx1a (ENSPNYG00000013918)	ENSPNYG00000013860	ENSPNYG00000013833	ENSPNYG00000013748	ENSPNYG00000013729	ENSPNYG00000013720	dhps (ENSPNYG00000013697)	NHERF2 (ENSPNYG00000013622)	sstr5 (ENSPNYG00000013600)	ENSPNYG00000013547	ENSPNYG00000013535	ENSPNYG00000013515	ENSPNYG00000013473	ENSPNYG00000013452	ENSPNYG00000013411	spag9a (ENSPNYG00000013345) ##22	tob1a (ENSPNYG00000013333)	ENSPNYG00000013320	ANKRD40 (ENSPNYG00000013300)	luc7l3 (ENSPNYG00000013291)	ENSPNYG00000013268	ENSPNYG00000013245	ENSPNYG00000012991	ENSPNYG00000012878	gtpbp1 (ENSPNYG00000012846)	sgsm3 (ENSPNYG00000012789)	ELFN2 (ENSPNYG00000012758)	ENSPNYG00000012726	ENSPNYG00000012711	ENSPNYG00000012684	ENSPNYG00000012657
Burton s mouthbrooder	MODERN SPECIES	783														ENSHBUG00000019847	spag9a (ENSHBUG00000019905) ##22	spag9a (ENSHBUG00000019954) ##22	tob1a (ENSHBUG00000019961)	ENSHBUG00000019967	ANKRD40 (ENSHBUG00000019980)	luc7l3 (ENSHBUG00000020018)	ENSHBUG00000020055
Haplochromini	ANCESTRAL SPECIES	282															ENSGT00940000160560.b.f.a.b.a.a.a.a.a	ENSGT00940000153496.a.b.b.g.b ##22
Burton s mouthbrooder	MODERN SPECIES	783															ENSHBUG00000019847	spag9a (ENSHBUG00000019905) ##22	spag9a (ENSHBUG00000019954) ##22	tob1a (ENSHBUG00000019961)	ENSHBUG00000019967	ANKRD40 (ENSHBUG00000019980)	luc7l3 (ENSHBUG00000020018)	ENSHBUG00000020055
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a.a.a	ENSGT00390000008063.k.a.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a.a.b	ENSGT00940000160560.b.f.a.b.a.a.b	ENSGT00940000153496.a.b.b.h ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.h.b	ENSGT00940000155025.B.j.h.a.b	ENSGT00940000155025.B.j.h.a.a	ENSGT00940000155025.B.j.g	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.o	ENSGT00940000177484.b	ENSGT00940000163334.d.p
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b.g.a ##22	ENSGT00940000160560.b.f.a.b.a.a.a.a.b	ENSGT00940000160560.b.f.a.b.a.a.a.a.a	ENSGT00940000153496.a.b.b.h ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j.h.b	ENSGT00940000155025.B.j.h.a.b	ENSGT00940000155025.B.j.h.a.a	ENSGT00940000155025.B.j.g	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.o	ENSGT00940000177484.b	ENSGT00940000163334.d.p
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a.a.a.b	ENSGT00940000160560.b.f.a.b.a.a.a.a.a	ENSGT00940000153496.a.b.b.h ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000155025.B.j.h.b	ENSGT00940000155025.B.j.h.a.b	ENSGT00940000155025.B.j.h.a.a	ENSGT00940000155025.B.j.g	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.o	ENSGT00940000163334.d.p	ENSGT00940000177484.a	ENSGT00440000038032
Zebra mbuna	MODERN SPECIES	1107	rfx1a (ENSMZEG00005011253)	ENSMZEG00005011272	ENSMZEG00005011280	ENSMZEG00005011298	ENSMZEG00005011335	ENSMZEG00005011350	dhps (ENSMZEG00005011357)	NHERF2 (ENSMZEG00005011395)	sstr5 (ENSMZEG00005011416)	ENSMZEG00005011429	ENSMZEG00005011437	ENSMZEG00005011446	ENSMZEG00005011457	ENSMZEG00005011467	ENSMZEG00005011487	spag9a (ENSMZEG00005011543) ##22	tob1a (ENSMZEG00005011637)	ENSMZEG00005011642	ANKRD40 (ENSMZEG00005011654)	luc7l3 (ENSMZEG00005011677)	ENSMZEG00005011691	ENSMZEG00005011707	ENSMZEG00005011713	ENSMZEG00005011720	ENSMZEG00005011729	ENSMZEG00005012298	gtpbp1 (ENSMZEG00005012317)	sgsm3 (ENSMZEG00005012353)	ELFN2 (ENSMZEG00005012393)	ENSMZEG00005012409	ENSMZEG00005012433
Eastern happy	MODERN SPECIES	16	KHSRP (ENSACLG00000001424)	rfx1a (ENSACLG00000001622)	rln3a (ENSACLG00000001794)	ENSACLG00000001853	ENSACLG00000001908	ENSACLG00000001925	dhps (ENSACLG00000001931)	NHERF2 (ENSACLG00000001982)	sstr5 (ENSACLG00000001989)	ENSACLG00000002000	ENSACLG00000002007	ENSACLG00000002013	ENSACLG00000002020	ENSACLG00000002053	ENSACLG00000002110	spag9a (ENSACLG00000002141) ##22	tob1a (ENSACLG00000002374)	ENSACLG00000002467	ANKRD40 (ENSACLG00000002478)	luc7l3 (ENSACLG00000002496)	ENSACLG00000002520	ENSACLG00000002606	ENSACLG00000002653	ENSACLG00000002878	ENSACLG00000003163	gtpbp1 (ENSACLG00000003178)	sgsm3 (ENSACLG00000003246)	ELFN2 (ENSACLG00000003433)	ENSACLG00000003461	ENSACLG00000003467	ENSACLG00000003488
Lyretail cichlid	MODERN SPECIES	310	ENSNBRG00000005804	ENSNBRG00000005818	ENSNBRG00000005851	KHSRP (ENSNBRG00000005876)	rfx1a (ENSNBRG00000006011)	ENSNBRG00000006159	ENSNBRG00000006205	ENSNBRG00000006242	ENSNBRG00000006314	dhps (ENSNBRG00000006341)	NHERF2 (ENSNBRG00000006388)	sstr5 (ENSNBRG00000006418)	ENSNBRG00000006467	ENSNBRG00000006475	ENSNBRG00000006495	spag9a (ENSNBRG00000006506) ##22	tob1a (ENSNBRG00000006626)	ENSNBRG00000006634	ANKRD40 (ENSNBRG00000006650)	luc7l3 (ENSNBRG00000006654)	ENSNBRG00000006696	ENSNBRG00000006742	ENSNBRG00000006770	ENSNBRG00000006792	ENSNBRG00000006811	ENSNBRG00000007072	gtpbp1 (ENSNBRG00000007080)	sgsm3 (ENSNBRG00000007115)	ELFN2 (ENSNBRG00000007175)	ENSNBRG00000007191	ENSNBRG00000007215
Nile tilapia	MODERN SPECIES	16	rfx1a (ENSONIG00000002158)	rln3a (ENSONIG00000002154)	ENSONIG00000002150	ENSONIG00000002147	ENSONIG00000002146	ENSONIG00000002145	dhps (ENSONIG00000002141)	NHERF2 (ENSONIG00000029228)	sstr5 (ENSONIG00000002138)	ENSONIG00000040919	ENSONIG00000037613	ENSONIG00000040254	ENSONIG00000002130	ENSONIG00000042915	ENSONIG00000002128	spag9a (ENSONIG00000002119) ##22	tob1a (ENSONIG00000020854)	ENSONIG00000002115	ANKRD40 (ENSONIG00000002112)	luc7l3 (ENSONIG00000002109)	ENSONIG00000041027	ENSONIG00000034364	ENSONIG00000002104	ENSONIG00000037107	ENSONIG00000002102	ENSONIG00000002098	gtpbp1 (ENSONIG00000002088)	sgsm3 (ENSONIG00000002075)	ELFN2 (ENSONIG00000031761)	ENSONIG00000002064	ENSONIG00000027501
Midas cichlid	MODERN SPECIES	721											ENSACIG00000000800	ENSACIG00000000791	ENSACIG00000000759	ENSACIG00000000741	ENSACIG00000000717	spag9a (ENSACIG00000000625) ##22	tob1a (ENSACIG00000000597)	ENSACIG00000000586	ANKRD40 (ENSACIG00000000564)	luc7l3 (ENSACIG00000000544)	ENSACIG00000000533	ENSACIG00000000408
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.a	ENSGT00940000163334.d.s.b	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b
Eupercaria	ANCESTRAL SPECIES	3	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.a	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585
Tetraodontidae	ANCESTRAL SPECIES	8	ENSGT00940000153469.a.a.k	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806.p	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00390000004681.a.b	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B.i	ENSGT00940000166693	ENSGT00940000159327.u.a
Fugu	MODERN SPECIES	17	rfx1a (ENSTRUG00000012387)	rln3a (ENSTRUG00000012677)	ENSTRUG00000020793	ENSTRUG00000012698	dhps (ENSTRUG00000028032)	ENSTRUG00000013001	ENSTRUG00000023143	dhps (ENSTRUG00000013039)	NHERF2 (ENSTRUG00000025428)	ENSTRUG00000019995	ENSTRUG00000020713	ENSTRUG00000013211	ENSTRUG00000022050	ENSTRUG00000023969	ENSTRUG00000022059	spag9a (ENSTRUG00000008729) ##22	tob1a (ENSTRUG00000030892)	tob1a (ENSTRUG00000008713)	ENSTRUG00000031025	ENSTRUG00000008658	ANKRD40 (ENSTRUG00000025390)	ENSTRUG00000008332	ENSTRUG00000007344	lgals2a (ENSTRUG00000025892)	gtpbp1 (ENSTRUG00000007112)	sgsm3 (ENSTRUG00000006937)	ELFN2 (ENSTRUG00000006880)	ENSTRUG00000006866	GFUS (ENSTRUG00000006801)	gtf2f1 (ENSTRUG00000006429)	alkbh7 (ENSTRUG00000006386)
Tetraodon	MODERN SPECIES	18	TNRC6C (ENSTNIG00000005273)	ENSTNIG00000005274	ENSTNIG00000005275	ENSTNIG00000005276	zgc:153240 (ENSTNIG00000005277)	rhot1a (ENSTNIG00000003293)	rfx1a (ENSTNIG00000003294)	ENSTNIG00000003295	dhps (ENSTNIG00000003296)	ENSTNIG00000000951	ENSTNIG00000003297	NHERF2 (ENSTNIG00000003298)	ENSTNIG00000005405	ENSTNIG00000001341	ENSTNIG00000005404	spag9a (ENSTNIG00000012637) ##22	tob1a (ENSTNIG00000012636)	ENSTNIG00000012635	ANKRD40 (ENSTNIG00000012634)	luc7l3 (ENSTNIG00000012633)	ENSTNIG00000012632	lgals2a (ENSTNIG00000012631)	gtpbp1 (ENSTNIG00000012630)	sgsm3 (ENSTNIG00000012629)	ELFN2 (ENSTNIG00000012628)	ENSTNIG00000012627	gtf2f1 (ENSTNIG00000012626)	alkbh7 (ENSTNIG00000012625)	CACNA1A (ENSTNIG00000012624)	ENSTNIG00000012623	NACC1 (ENSTNIG00000012622)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.a	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585
Ballan wrasse	MODERN SPECIES	734										ENSLBEG00000005641	ENSLBEG00000005622	ENSLBEG00000005584	ENSLBEG00000005559	ENSLBEG00000005507	ENSLBEG00000005493	spag9a (ENSLBEG00000005342) ##22	tob1a (ENSLBEG00000005290)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.a	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585
Perciformes	ANCESTRAL SPECIES	1	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.a	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00900000141021.b.b.e
Lumpfish	MODERN SPECIES	23	rhot1a (ENSCLMG00005003303)	ENSCLMG00005003285	ENSCLMG00005003281	ENSCLMG00005003279	ENSCLMG00005003278	KHSRP (ENSCLMG00005003277)	rfx1a (ENSCLMG00005013826)	rln3a (ENSCLMG00005013825)	ENSCLMG00005013824	ENSCLMG00005013823	NHERF2 (ENSCLMG00005013822)	ENSCLMG00005013821	ENSCLMG00005013820	ENSCLMG00005013819	ENSCLMG00005013817	spag9a (ENSCLMG00005013119) ##22	tob1a (ENSCLMG00005013111)	ENSCLMG00005013110	ANKRD40 (ENSCLMG00005013108)	luc7l3 (ENSCLMG00005013106)	ENSCLMG00005013103	lgals2a (ENSCLMG00005013101)	gtpbp1 (ENSCLMG00005011293)	sgsm3 (ENSCLMG00005009900)	ELFN2 (ENSCLMG00005009889)	ENSCLMG00005009888	gtf2f1 (ENSCLMG00005009886)	GFUS (ENSCLMG00005009824)	alkbh7 (ENSCLMG00005009821)	ENSCLMG00005009819	ENSCLMG00005009816
Stickleback	MODERN SPECIES	10	ENSGACG00000012446	ENSGACG00000012449	dhps (ENSGACG00000012455)	ENSGACG00000012460	ENSGACG00000012468	dhps (ENSGACG00000012472)	NHERF2 (ENSGACG00000012529)	sstr5 (ENSGACG00000012535)	ENSGACG00000012543	ENSGACG00000012544	ENSGACG00000012548	ENSGACG00000012554	ENSGACG00000012556	ENSGACG00000012558	ENSGACG00000012564	spag9a (ENSGACG00000012567) ##22	tob1a (ENSGACG00000012584)	ENSGACG00000012587	ANKRD40 (ENSGACG00000012593)	luc7l3 (ENSGACG00000012598)	ENSGACG00000012606	ENSGACG00000012609	gtpbp1 (ENSGACG00000012617)	ENSGACG00000012631	sgsm3 (ENSGACG00000012637)	ELFN2 (ENSGACG00000012664)	ENSGACG00000012669	gtf2f1 (ENSGACG00000012677)	GFUS (ENSGACG00000012690)	alkbh7 (ENSGACG00000012731)	CACNA1A (ENSGACG00000012741)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.a	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585
Channel bull blenny	MODERN SPECIES	22	dhps (ENSCGOG00000009108)	ENSCGOG00000009209	ENSCGOG00000009210	dhps (ENSCGOG00000009223)	NHERF2 (ENSCGOG00000009513)	sstr5 (ENSCGOG00000009539)	ENSCGOG00000009541	ENSCGOG00000009545	ENSCGOG00000009552	ENSCGOG00000009554	ENSCGOG00000009559	ENSCGOG00000009562	ENSCGOG00000009565	ENSCGOG00000009566	ENSCGOG00000009568	spag9a (ENSCGOG00000009690) ##22	tob1a (ENSCGOG00000012768)	ENSCGOG00000012770	ANKRD40 (ENSCGOG00000012774)	luc7l3 (ENSCGOG00000012776)	ENSCGOG00000012782	lgals2a (ENSCGOG00000012786)	gtpbp1 (ENSCGOG00000012793)	sgsm3 (ENSCGOG00000012819)	ELFN2 (ENSCGOG00000013129)	ENSCGOG00000013132	ENSCGOG00000013139	ENSCGOG00000013142	gtf2f1 (ENSCGOG00000013148)	GFUS (ENSCGOG00000013151)	gtf2f1 (ENSCGOG00000013160)
Pike perch	MODERN SPECIES	174															ENSSLUG00000010704	spag9a (ENSSLUG00000010728) ##22	ENSSLUG00000010793	tob1a (ENSSLUG00000010799)	ENSSLUG00000010800	ANKRD40 (ENSSLUG00000010805)	luc7l3 (ENSSLUG00000010808)	ENSSLUG00000010849	lgals2a (ENSSLUG00000011615)	gtpbp1 (ENSSLUG00000011653)	sgsm3 (ENSSLUG00000012298)	ELFN2 (ENSSLUG00000013937)	ENSSLUG00000013949	gtf2f1 (ENSSLUG00000013973)	GFUS (ENSSLUG00000014034)	alkbh7 (ENSSLUG00000014891)	CACNA1A (ENSSLUG00000014913)
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	29	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000159327.u.a
European seabass	MODERN SPECIES	21	ENSDLAG00005025869	ENSDLAG00005030145	ENSDLAG00005025854	ENSDLAG00005031880	ENSDLAG00005025835	ENSDLAG00005025834	ENSDLAG00005025832	ENSDLAG00005025830	ENSDLAG00005025822	ENSDLAG00005025815	ENSDLAG00005012738	ENSDLAG00005025827	ENSDLAG00005025817	ENSDLAG00005025814	ENSDLAG00005003409	spag9a (ENSDLAG00005025784) ##22	tob1a (ENSDLAG00005029503)	ENSDLAG00005025772	ENSDLAG00005025770	ENSDLAG00005025768	ENSDLAG00005025693	ENSDLAG00005025670	gtpbp1 (ENSDLAG00005025645)	ENSDLAG00005025626	ENSDLAG00005025621	ENSDLAG00005032070	ENSDLAG00005025604	gtf2f1 (ENSDLAG00005025596)	ENSDLAG00005025581	ENSDLAG00005025499	ENSDLAG00005033944
Large yellow croaker	MODERN SPECIES	483	rfx1a (ENSLCRG00005000728)	rln3a (ENSLCRG00005000700)	ENSLCRG00005000683	ENSLCRG00005000612	ENSLCRG00005000604	ENSLCRG00005000599	ENSLCRG00005000593	ENSLCRG00005000591	dhps (ENSLCRG00005012350)	NHERF2 (ENSLCRG00005012342)	sstr5 (ENSLCRG00005012341)	ENSLCRG00005012340	ENSLCRG00005012339	ENSLCRG00005012337	ENSLCRG00005012336	spag9a (ENSLCRG00005012110) ##22	ENSLCRG00005012105	GFUS (ENSLCRG00005012102)	ENSLCRG00005012101	tob1a (ENSLCRG00005012100)	ENSLCRG00005012099	ANKRD40 (ENSLCRG00005012098)	luc7l3 (ENSLCRG00005012096)	ENSLCRG00005004625	lgals2a (ENSLCRG00005004570)	gtpbp1 (ENSLCRG00005003952)	sgsm3 (ENSLCRG00005001184)	ELFN2 (ENSLCRG00005001160)	ENSLCRG00005001159	ENSLCRG00005001157	ENSLCRG00005001155
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010007804	ENSSAUG00010007805	ENSSAUG00010007806	NACC1 (ENSSAUG00010007807)	ENSSAUG00010007808	CACNA1A (ENSSAUG00010007818)	alkbh7 (ENSSAUG00010007997)	GFUS (ENSSAUG00010008001)	gtf2f1 (ENSSAUG00010008012)	GFUS (ENSSAUG00010008024)	GFUS (ENSSAUG00010008138)	ENSSAUG00010008368	ENSSAUG00010008366	ENSSAUG00010008369	ENSSAUG00010008372	spag9a (ENSSAUG00010008402) ##22	tob1a (ENSSAUG00010008706)	ENSSAUG00010008707	ANKRD40 (ENSSAUG00010008709)	ENSSAUG00010008711	ENSSAUG00010008771	LGALS1 (ENSSAUG00010016338)	gtpbp1 (ENSSAUG00010016357)	sgsm3 (ENSSAUG00010018317)	ENSSAUG00010018324	ELFN2 (ENSSAUG00010018325)	ENSSAUG00010018327	ENSSAUG00010018329	ENSSAUG00010018330	ENSSAUG00010018331	foxm1 (ENSSAUG00010018334)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.s.b	ENSGT00940000177484	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00900000141021.b.b.e
Climbing perch	MODERN SPECIES	21	ENSATEG00000024741	ENSATEG00000024744	rfx1a (ENSATEG00000024750)	ENSATEG00000024753	ENSATEG00000024755	ENSATEG00000024761	ENSATEG00000024766	ENSATEG00000024767	dhps (ENSATEG00000024768)	ENSATEG00000024771	ENSATEG00000024772	ENSATEG00000024773	ENSATEG00000024774	ENSATEG00000024775	ENSATEG00000024776	spag9a (ENSATEG00000024779) ##22	tob1a (ENSATEG00000024786)	ENSATEG00000024787	ENSATEG00000024790	ENSATEG00000024792	ENSATEG00000024795	ENSATEG00000024797	ENSATEG00000024801	gtpbp1 (ENSATEG00000024804)	ENSATEG00000024807	ENSATEG00000024809	ENSATEG00000024811	ENSATEG00000024835	gtf2f1 (ENSATEG00000024850)	ENSATEG00000024853	alkbh7 (ENSATEG00000024856)
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000018550	ENSBSLG00000018552	ENSBSLG00000018556	odad3 (ENSBSLG00000018566)	ENSBSLG00000018581	ENSBSLG00000018587	ENSBSLG00000018595	ENSBSLG00000018639	NACC1 (ENSBSLG00000018647)	ENSBSLG00000018654	ENSBSLG00000018662	ENSBSLG00000018672	ENSBSLG00000018676	ENSBSLG00000018677	ENSBSLG00000018680	spag9a (ENSBSLG00000018699) ##22	tob1a (ENSBSLG00000019616)	ENSBSLG00000019625	ANKRD40 (ENSBSLG00000019626)	ENSBSLG00000019627	ENSBSLG00000019656	lgals2a (ENSBSLG00000003693)	gtpbp1 (ENSBSLG00000003871)	sgsm3 (ENSBSLG00000004143)	ELFN2 (ENSBSLG00000004229)	ENSBSLG00000004736	gtf2f1 (ENSBSLG00000004891)	alkbh7 (ENSBSLG00000005542)	CACNA1A (ENSBSLG00000005686)	ENSBSLG00000006136	ENSBSLG00000006139
Zig-zag eel	MODERN SPECIES	22	gtf2f1 (ENSMAMG00000023728)	ENSMAMG00000023724	ENSMAMG00000023720	ENSMAMG00000023711	gtpbp1 (ENSMAMG00000023709)	ENSMAMG00000023707	ENSMAMG00000023701	ENSMAMG00000023698	ENSMAMG00000023696	ENSMAMG00000023694	tob1a (ENSMAMG00000023693)	ENSMAMG00000023691	ENSMAMG00000023690	ENSMAMG00000023689	ENSMAMG00000025234	ENSMAMG00000023682 ##22	ENSMAMG00000023679	dhps (ENSMAMG00000023673)	ENSMAMG00000023670	ENSMAMG00000023669	TNPO2 (ENSMAMG00000023658)	ENSMAMG00000023654	ENSMAMG00000023651	rfx1a (ENSMAMG00000023645)	ENSMAMG00000023639	ENSMAMG00000023633	ENSMAMG00000027701	rhot1a (ENSMAMG00000023627)	zgc:153240 (ENSMAMG00000023624)	znf207a (ENSMAMG00000023620)	ENSMAMG00000023613
Carangaria	ANCESTRAL SPECIES	4	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00940000177484	ENSGT00940000163334.d.s.a	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00940000177484	ENSGT00940000163334.d.s.a	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B
Seriola	ANCESTRAL SPECIES	26	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.u	ENSGT00950000182933.B.a.b.b.v	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00940000166693
Greater amberjack	MODERN SPECIES	70	ENSSDUG00000001938	ENSSDUG00000001767	ENSSDUG00000001741	ENSSDUG00000001728	dhps (ENSSDUG00000001702)	NHERF2 (ENSSDUG00000001661)	sstr5 (ENSSDUG00000001641)	ENSSDUG00000001611	ENSSDUG00000001600	ENSSDUG00000001586	ENSSDUG00000001554	ENSSDUG00000001534	ENSSDUG00000001507	ENSSDUG00000001491	ENSSDUG00000001403	spag9a (ENSSDUG00000001293) ##22	tob1a (ENSSDUG00000001275)	ENSSDUG00000001257	ANKRD40 (ENSSDUG00000001218)	luc7l3 (ENSSDUG00000001183)	ENSSDUG00000001013	lgals2a (ENSSDUG00000000976)	gtpbp1 (ENSSDUG00000000925)	sgsm3 (ENSSDUG00000000816)	ELFN2 (ENSSDUG00000000781)	ENSSDUG00000000741	ENSSDUG00000000723	gtf2f1 (ENSSDUG00000000670)	GFUS (ENSSDUG00000000637)	alkbh7 (ENSSDUG00000000630)	CACNA1A (ENSSDUG00000000453)
Yellowtail amberjack	MODERN SPECIES	3245	rfx1a (ENSSLDG00000025626)	rln3a (ENSSLDG00000025627)	ENSSLDG00000025628	ENSSLDG00000025629	ENSSLDG00000025630	ENSSLDG00000025631	dhps (ENSSLDG00000025632)	NHERF2 (ENSSLDG00000025636)	sstr5 (ENSSLDG00000025637)	ENSSLDG00000025638	ENSSLDG00000025639	ENSSLDG00000025640	ENSSLDG00000025641	ENSSLDG00000025642	ENSSLDG00000025643	spag9a (ENSSLDG00000025644) ##22
Barramundi perch	MODERN SPECIES	41	ENSLCAG00010014085	ENSLCAG00010014132	dhps (ENSLCAG00010014306)	ENSLCAG00010014329	ENSLCAG00010014330	dhps (ENSLCAG00010014333)	ENSLCAG00010014336	NHERF2 (ENSLCAG00010014339)	ENSLCAG00010014343	ENSLCAG00010014345	ENSLCAG00010014347	ENSLCAG00010014349	ENSLCAG00010014353	ENSLCAG00010014360	ENSLCAG00010014366	spag9a (ENSLCAG00010014388) ##22	tob1a (ENSLCAG00010014633)	ENSLCAG00010014635	ANKRD40 (ENSLCAG00010014636)	ENSLCAG00010014637	ENSLCAG00010015036	lgals2a (ENSLCAG00010016367)	gtpbp1 (ENSLCAG00010016384)	sgsm3 (ENSLCAG00010016461)	ELFN2 (ENSLCAG00010016781)	ENSLCAG00010016784	ENSLCAG00010016785	ENSLCAG00010016786	gtf2f1 (ENSLCAG00010016798)	GFUS (ENSLCAG00010016822)	alkbh7 (ENSLCAG00010016827)
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00440000038032	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d.t	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00900000141021.b.b.e	ENSGT00940000159327.u.a
Turbot	MODERN SPECIES	10	ENSSMAG00000012141	ENSSMAG00000012132	ENSSMAG00000012008	ENSSMAG00000011977	dhps (ENSSMAG00000021752)	dhps (ENSSMAG00000011728)	ENSSMAG00000011703	ENSSMAG00000011719	dhps (ENSSMAG00000011656)	ENSSMAG00000030303	ENSSMAG00000011632	ENSSMAG00000011631	ENSSMAG00000011620	ENSSMAG00000011605	ENSSMAG00000025055	spag9a (ENSSMAG00000011346) ##22	ENSSMAG00000011333	ENSSMAG00000011283	ENSSMAG00000011257	ENSSMAG00000011232	ENSSMAG00000037586	gtpbp1 (ENSSMAG00000011143)	ENSSMAG00000011092	ENSSMAG00000011074	ENSSMAG00000011044	ENSSMAG00000010926	alkbh7 (ENSSMAG00000023657)	ENSSMAG00000010801	ENSSMAG00000010767	ENSSMAG00000010762	ENSSMAG00000037722
Tongue sole	MODERN SPECIES	8	CACNA1A (ENSCSEG00000013404)	alkbh7 (ENSCSEG00000013396)	GFUS (ENSCSEG00000013379)	gtf2f1 (ENSCSEG00000013361)	dhps (ENSCSEG00000013335)	ENSCSEG00000013328	ENSCSEG00000013316	dhps (ENSCSEG00000013299)	NHERF2 (ENSCSEG00000013294)	sstr5 (ENSCSEG00000013289)	ENSCSEG00000013285	ENSCSEG00000013282	ENSCSEG00000013274	ENSCSEG00000013270	ENSCSEG00000013255	spag9a (ENSCSEG00000013109) ##22	tob1a (ENSCSEG00000013094)	ENSCSEG00000013092	ANKRD40 (ENSCSEG00000013083)	luc7l3 (ENSCSEG00000013074)	ENSCSEG00000013035	lgals2a (ENSCSEG00000013016)	gtpbp1 (ENSCSEG00000013001)	sgsm3 (ENSCSEG00000012982)	ELFN2 (ENSCSEG00000012975)	ENSCSEG00000012958	ENSCSEG00000012923	ENSCSEG00000012912	rhot1a (ENSCSEG00000012850)	ENSCSEG00000012838	ENSCSEG00000012827
Pinecone sodierfish	MODERN SPECIES	22	rfx1a (ENSMMDG00005000302)	ENSMMDG00005016355	ENSMMDG00005016348	ENSMMDG00005016338	dhps (ENSMMDG00005016323)	dhps (ENSMMDG00005016149)	ENSMMDG00005016138	ENSMMDG00005016134	dhps (ENSMMDG00005016126)	NHERF2 (ENSMMDG00005016122)	sstr5 (ENSMMDG00005016114)	ENSMMDG00005016107	ENSMMDG00005016105	ENSMMDG00005016103	ENSMMDG00005016101	spag9a (ENSMMDG00005013693) ##22	tob1a (ENSMMDG00005013678)	WFIKKN2 (ENSMMDG00005013677)	ANKRD40 (ENSMMDG00005013676)	luc7l3 (ENSMMDG00005013673)	ENSMMDG00005013671	lgals2a (ENSMMDG00005013669)	gtpbp1 (ENSMMDG00005013521)	sgsm3 (ENSMMDG00005012498)	ELFN2 (ENSMMDG00005012483)	ENSMMDG00005012481	gtf2f1 (ENSMMDG00005012477)	ENSMMDG00005012040	alkbh7 (ENSMMDG00005012025)	CACNA1A (ENSMMDG00005009476)	ENSMMDG00005009399
Cod	MODERN SPECIES	11	ENSGMOG00000033297	ENSGMOG00000001726	ENSGMOG00000023777	cacnb1 (ENSGMOG00000005267)	ENSGMOG00000005287	ENSGMOG00000023124	ENSGMOG00000023485	ENSGMOG00000018274	ENSGMOG00000024582	ENSGMOG00000030678	ENSGMOG00000036564	ENSGMOG00000001642	ENSGMOG00000024976	ENSGMOG00000033507	ENSGMOG00000030789	spag9a (ENSGMOG00000012473) ##22	ENSGMOG00000035012	ENSGMOG00000026480	ENSGMOG00000028106	ENSGMOG00000014493	ENSGMOG00000025324	ENSGMOG00000035110	ENSGMOG00000035654	ENSGMOG00000030049	ENSGMOG00000030990	ENSGMOG00000023258	ENSGMOG00000023043	ENSGMOG00000003179	ENSGMOG00000026420	ENSGMOG00000027890	ENSGMOG00000026997
Protacanthopterygii	ANCESTRAL SPECIES	8	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840.q	ENSGT00940000166251	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000014131	ENSGT00940000160560.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00440000038032	ENSGT00390000004681.a.b	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT01100000263659
Salmoninae	ANCESTRAL SPECIES	950												ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.b.b	ENSGT00390000006420	ENSGT00940000160560.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a.e
Salmoninae_a	ANCESTRAL SPECIES	79	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840.q.c	ENSGT00940000166251.b.a.a	ENSGT00390000018266.wd	ENSGT00940000159290	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b.e	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a.b.a	ENSGT00990000204948.a	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.b.b	ENSGT00990000204948.b	ENSGT00940000160560.b.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a.e	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b.f	ENSGT00940000174591	ENSGT00940000155698.A.j	ENSGT00940000158594.d	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a.a	ENSGT00940000157282.m	ENSGT00940000159737.d	ENSGT00940000163334.d.n	ENSGT00440000038032.j	ENSGT00390000004681.a.b.g.b.b	ENSGT00440000038032.i.b
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	105	ENSGT00940000165478.k	ENSGT00390000017548.a.t	ENSGT00940000166319.c	ENSGT00550000074840.q.c.a	ENSGT00940000166251.b.a.a	ENSGT00390000018266.wd	ENSGT00940000159290	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b.e.a	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a.b.b	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.a	ENSGT00990000204948.b	ENSGT00940000160560.b.a.a	ENSGT00940000153496.a.b.b.i ##22	ENSGT00940000154208.c.a.e.b	ENSGT00940000158031.d.e	ENSGT00390000007792.d	ENSGT00950000183213.a.b.f.a	ENSGT00940000158594.d	ENSGT00990000210173	ENSGT00940000155025.B.j.s	ENSGT00940000156054.c.a.a.b	ENSGT00940000157282.m.b	ENSGT00940000163334.d.m	ENSGT00440000038032.i.a.a	ENSGT00390000004681.a.b.g.a	ENSGT00390000014585.f.c	ENSGT00940000156518.B.f.b.b.a	ENSGT01100000263659.e
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000037974	ENSSSAG00000004075	ENSSSAG00000082294	anks4b (ENSSSAG00000042826)	ENSSSAG00000121105	ENSSSAG00000097526	uqcrc2a (ENSSSAG00000042984)	MOSMO (ENSSSAG00000112727)	ENSSSAG00000118349	SDR42E2 (ENSSSAG00000001764)	ENSSSAG00000097687	mfsd13al (ENSSSAG00000045167)	kdelr2a (ENSSSAG00000045213)	ENSSSAG00000089800	ENSSSAG00000045256	spag9a (ENSSSAG00000001883) ##22	tob1a (ENSSSAG00000090431)	ENSSSAG00000098421	ENSSSAG00000042812	crop (ENSSSAG00000044465)	ENSSSAG00000044566	ENSSSAG00000000358	ENSSSAG00000113145	gtpbp1 (ENSSSAG00000046136)	ENSSSAG00000087296	ENSSSAG00000098147	ENSSSAG00000110592	ENSSSAG00000085174	ENSSSAG00000045747	ENSSSAG00000045716	alkbh7 (ENSSSAG00000045707)
River trout	MODERN SPECIES		DXO (ENSSTUG00000000838)	ENSSTUG00000000824	anks4b (ENSSTUG00000000819)	ENSSTUG00000000809	snu13a (ENSSTUG00000000797)	uqcrc2a (ENSSTUG00000000440)	MOSMO (ENSSTUG00000000328)	ENSSTUG00000000313	SDR42E2 (ENSSTUG00000000293)	CDR2 (ENSSTUG00000016558)	mfsd13al (ENSSTUG00000016549)	kdelr2a (ENSSTUG00000016542)	ENSSTUG00000016537	ENSSTUG00000016533	ENSSTUG00000016491	spag9a (ENSSTUG00000014749) ##22	tob1a (ENSSTUG00000014658)	ENSSTUG00000014655	ENSSTUG00000014645	luc7l3 (ENSSTUG00000014632)	ENSSTUG00000014325	ENSSTUG00000014231	ENSSTUG00000014216	gtpbp1 (ENSSTUG00000013548)	sgsm3 (ENSSTUG00000013315)	ENSSTUG00000013286	gtf2f1 (ENSSTUG00000013266)	GFUS (ENSSTUG00000013225)	alkbh7 (ENSSTUG00000013211)	ENSSTUG00000013188	CACNA1A (ENSSTUG00000010707)
Salmo	ANCESTRAL SPECIES	131												ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.b.a	ENSGT00990000204948.a	ENSGT00940000160560.b.a.b	ENSGT00940000153496.a.b.b.j ##22	ENSGT00940000154208.c.a.e.a	ENSGT00940000158031.d.f	ENSGT00390000007792.c	ENSGT00950000183213.a.b.f.b	ENSGT00940000155025.B.j.t	ENSGT00940000156054.c.a.a.a	ENSGT00940000157282.n	ENSGT00940000159737.d.i	ENSGT00940000157282.m.a	ENSGT00940000159737.d.j	ENSGT00440000038032.j	ENSGT00390000004681.a.b.g.b.b	ENSGT00390000014585.e	ENSGT00940000156518.B.f.b.b.b	ENSGT01100000263659.f
River trout	MODERN SPECIES	25	ENSSTUG00000040522	anks4b (ENSSTUG00000040499)	ENSSTUG00000040482	snu13a (ENSSTUG00000040466)	ENSSTUG00000040464	uqcrc2a (ENSSTUG00000039597)	ENSSTUG00000039575	ENSSTUG00000039559	CDR2 (ENSSTUG00000039499)	mfsd13al (ENSSTUG00000039462)	ENSSTUG00000039457	kdelr2a (ENSSTUG00000039452)	ENSSTUG00000039444	ENSSTUG00000039437	ENSSTUG00000039432	spag9a (ENSSTUG00000037713) ##22	tob1a (ENSSTUG00000037634)	ENSSTUG00000037629	ENSSTUG00000037617	luc7l3 (ENSSTUG00000037606)	ENSSTUG00000036038	ENSSTUG00000036002	ENSSTUG00000035986	gtpbp1 (ENSSTUG00000035472)	sgsm3 (ENSSTUG00000034649)	ELFN2 (ENSSTUG00000034585)	ENSSTUG00000034547	gtf2f1 (ENSSTUG00000034481)	GFUS (ENSSTUG00000034361)	alkbh7 (ENSSTUG00000034339)	ENSSTUG00000034336
Atlantic salmon	MODERN SPECIES	22	anks4b (ENSSSAG00000005160)	ENSSSAG00000005105	ENSSSAG00000005089	uqcrc2a (ENSSSAG00000003539)	ENSSSAG00000110935	ENSSSAG00000118572	ENSSSAG00000105838	ENSSSAG00000119125	ENSSSAG00000100539	mfsd13al (ENSSSAG00000001778)	ENSSSAG00000001781	kdelr2a (ENSSSAG00000110911)	ENSSSAG00000092786	ENSSSAG00000105789	ENSSSAG00000095631	spag9a (ENSSSAG00000111664) ##22	tob1a (ENSSSAG00000087402)	ENSSSAG00000000562	ENSSSAG00000102234	ENSSSAG00000005063	ENSSSAG00000108655	ENSSSAG00000113898	LEG (ENSSSAG00000047531)	gtpb1 (ENSSSAG00000000474)	ENSSSAG00000092729	ENSSSAG00000004220	gtf2f1 (ENSSSAG00000110669)	ENSSSAG00000042527	ENSSSAG00000110940	alkbh7 (ENSSSAG00000098409)	ENSSSAG00000047867
Oncorhynchus	ANCESTRAL SPECIES	44	ENSGT00940000166319	ENSGT00550000074840.q.d	ENSGT00940000166251.a	ENSGT00940000177189.g.a.a	ENSGT00390000018266.wd	ENSGT00940000159290.c	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b.e	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.b.b	ENSGT00390000004010.a.b.a.a.b.a	ENSGT00990000204948.b	ENSGT00940000160560.b.a.a.b	ENSGT00940000160560.b.a.b	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a.f.a.b	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833	ENSGT00940000159737.d	ENSGT00940000163334.d.n	ENSGT00440000038032.j	ENSGT00390000004681.a.b.g.b.a.b	ENSGT00440000038032.i.b	ENSGT00390000004681.a.b.g.b.a.a	ENSGT00390000014585.e	ENSGT00980000202616	ENSGT00390000004681.a.b.g.a	ENSGT00390000014585.f	ENSGT00940000156518.B.f.b.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	477															ENSGT00940000160560.b.a.a.a	ENSGT00940000153496.a.b.b ##22	ENSGT00940000154208.c.a.f.a.b
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	35	anks4b (ENSOKIG00005041581)	ENSOKIG00005041523	snu13a (ENSOKIG00005041499)	uqcrc2a (ENSOKIG00005040567)	ENSOKIG00005040515	MOSMO (ENSOKIG00005040490)	ENSOKIG00005040336	SDR42E2 (ENSOKIG00005040250)	CDR2 (ENSOKIG00005040190)	mfsd13al (ENSOKIG00005040098)	ENSOKIG00005040080	kdelr2a (ENSOKIG00005040044)	ENSOKIG00005040021	ENSOKIG00005049021	ENSOKIG00005049014	spag9a (ENSOKIG00005048745) ##22	tob1a (ENSOKIG00005048693)	ENSOKIG00005048684	ENSOKIG00005048678	luc7l3 (ENSOKIG00005048664)	ENSOKIG00005048114	gtpbp1 (ENSOKIG00005047747)	sgsm3 (ENSOKIG00005047619)	ENSOKIG00005047602	ELFN2 (ENSOKIG00005047594)	ENSOKIG00005047578	gtf2f1 (ENSOKIG00005047516)	GFUS (ENSOKIG00005047332)	GFUS (ENSOKIG00005047275)	alkbh7 (ENSOKIG00005047258)
Coho salmon	MODERN SPECIES	334													ENSOKIG00005031880	ENSOKIG00005031874	ENSOKIG00005031866	ENSOKIG00005030671 ##22
Chinook salmon	MODERN SPECIES	477															ENSOTSG00005041996	ENSOTSG00005041993 ##22
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000063785	ENSOMYG00000061841	ENSOMYG00000051186	ENSOMYG00000077393	ENSOMYG00000054240	ENSOMYG00000011832	MOSMO (ENSOMYG00000011740)	ENSOMYG00000050735	SDR42E2 (ENSOMYG00000058631)	ENSOMYG00000011720	mfsd13al (ENSOMYG00000011712)	kdelr2a (ENSOMYG00000011703)	ENSOMYG00000077833	ENSOMYG00000018483	ENSOMYG00000018468	spag9a (ENSOMYG00000016178) ##22	ENSOMYG00000065386	ENSOMYG00000073838	tob1a (ENSOMYG00000016092)	ENSOMYG00000016089	ENSOMYG00000016086	ENSOMYG00000062487	ENSOMYG00000076331	ENSOMYG00000072194	gtpbp1 (ENSOMYG00000073687)	LEG (ENSOMYG00000005462)	ENSOMYG00000005508	gtf2f1 (ENSOMYG00000050247)	ENSOMYG00000016030	ENSOMYG00000016016	alkbh7 (ENSOMYG00000016007)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000007577	anks4b (ENSOMYG00000007540)	ENSOMYG00000007494	ENSOMYG00000069273	uqcrc2a (ENSOMYG00000006950)	ENSOMYG00000006271	MOSMO (ENSOMYG00000006255)	ENSOMYG00000057360	SDR42E2 (ENSOMYG00000072940)	ENSOMYG00000018550	mfsd13al (ENSOMYG00000018532)	ENSOMYG00000037346	kdelr2a (ENSOMYG00000018511)	ENSOMYG00000051758	ENSOMYG00000055820	ENSOMYG00000011534 ##22	tob1a (ENSOMYG00000006239)	ENSOMYG00000055528	ENSOMYG00000024073	ENSOMYG00000073159	ENSOMYG00000006202	ENSOMYG00000060300	ENSOMYG00000053628	leg (ENSOMYG00000006135)	gtpbp1 (ENSOMYG00000006011)	ENSOMYG00000005877	ENSOMYG00000072266	ENSOMYG00000055740	ENSOMYG00000005195	gtf2f1 (ENSOMYG00000005164)	ENSOMYG00000004935
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2474									SDR42E2 (ENSHHUG00000051324)	CDR2 (ENSHHUG00000051319)	mfsd13al (ENSHHUG00000051317)	ENSHHUG00000051316	kdelr2a (ENSHHUG00000051314)	ENSHHUG00000051313	ENSHHUG00000051312	spag9a (ENSHHUG00000051293) ##22
Huchen	MODERN SPECIES	3899															ENSHHUG00000046334	spag9a (ENSHHUG00000046341) ##22
Northern pike	MODERN SPECIES	10	stk19 (ENSELUG00000005487)	DXO (ENSELUG00000005464)	ENSELUG00000005419	anks4b (ENSELUG00000005388)	ENSELUG00000005374	NH2L1 (ENSELUG00000005342)	uqcrc2a (ENSELUG00000005283)	MOSMO (ENSELUG00000005241)	ENSELUG00000000143	SDR42E2 (ENSELUG00000005057)	CDR2 (ENSELUG00000005044)	mfsd13al (ENSELUG00000005021)	ENSELUG00000004992	kdelr2a (ENSELUG00000004976)	ENSELUG00000029249	spag9a (ENSELUG00000004861) ##22	tob1a (ENSELUG00000004742)	ENSELUG00000004735	ANKRD40 (ENSELUG00000004718)	luc7l3 (ENSELUG00000004700)	ENSELUG00000001773	ENSELUG00000004644	lgals2a (ENSELUG00000004581)	gtpbp1 (ENSELUG00000004553)	sgsm3 (ENSELUG00000004509)	ELFN2 (ENSELUG00000004456)	ENSELUG00000004412	gtf2f1 (ENSELUG00000004319)	alkbh7 (ENSELUG00000004289)	CACNA1A (ENSELUG00000004264)	IER2 (ENSELUG00000030423)
Spotted gar	MODERN SPECIES	648	ENSLOCG00000011179	lrrc59 (ENSLOCG00000011171)	nat9 (ENSLOCG00000011162)	TMEM104 (ENSLOCG00000011150)	GRIN2C (ENSLOCG00000011140)	nherf1a (ENSLOCG00000011132)	ENSLOCG00000011121	xylt2 (ENSLOCG00000011114)	ENSLOCG00000011106	mrpl27 (ENSLOCG00000011095)	EME1 (ENSLOCG00000011088) ##25	ca10a (ENSLOCG00000011070)	UTP18 (ENSLOCG00000011061)	NME2 (ENSLOCG00000011055)	MBTD1 (ENSLOCG00000011026)	spag9a (ENSLOCG00000010987) ##22	tob1b (ENSLOCG00000010978)	WFIKKN2 (ENSLOCG00000010971)	ANKRD40 (ENSLOCG00000010960)	luc7l3 (ENSLOCG00000010953)	ENSLOCG00000010947	ENSLOCG00000010918	radil2a (ENSLOCG00000010906)	ENSLOCG00000010899	sult2st2 (ENSLOCG00000010892)	ENSLOCG00000010884	bsk146 (ENSLOCG00000010878)	ENSLOCG00000010874	ENSLOCG00000010854	ENSLOCG00000010843	dhrs7ca (ENSLOCG00000010828)
Reedfish	MODERN SPECIES	5	ENSECRG00000022139	CHAD (ENSECRG00000022141)	lrrc59 (ENSECRG00000022152)	nat9 (ENSECRG00000022163)	TMEM104 (ENSECRG00000022178)	GRIN2C (ENSECRG00000022205)	nherf1a (ENSECRG00000022221)	ENSECRG00000022238	xylt2 (ENSECRG00000022255)	mrpl27 (ENSECRG00000022266)	ENSECRG00000022273 ##25	ca10a (ENSECRG00000022284)	UTP18 (ENSECRG00000022302)	nme2b.2 (ENSECRG00000022317)	MBTD1 (ENSECRG00000022345)	spag9a (ENSECRG00000022438) ##22	tob1b (ENSECRG00000022605)	WFIKKN2 (ENSECRG00000022612)	ANKRD40 (ENSECRG00000022620)	luc7l3 (ENSECRG00000022628)	ENSECRG00000022646	radil2a (ENSECRG00000022684)	sult2st2 (ENSECRG00000022698)	ENSECRG00000022730	bsk146 (ENSECRG00000022770)	ENSECRG00000022774	ENSECRG00000014743	ENSECRG00000014871	ENSECRG00000014907	dhrs7ca (ENSECRG00000015003)	hs3st3l (ENSECRG00000015032) ##32
Sarcopterygii	ANCESTRAL SPECIES	362												ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000162213	ENSGT00940000153840.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000163867	ENSGT00940000164726
Tetrapoda	ANCESTRAL SPECIES	284																ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a
Theria	ANCESTRAL SPECIES	25	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000157428	ENSGT00940000156555.a	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT01050000244940.a.a.j.a	ENSGT00940000155223.a.b	ENSGT00940000155223.b	ENSGT00940000159622	ENSGT00440000033919	ENSGT00940000166077	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385
Marsupialia_b	ANCESTRAL SPECIES	26	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555.a	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT01050000244940.a.a.j.a	ENSGT00940000155223.a.b	ENSGT00940000155223.b	ENSGT00940000159622	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Diprotodontia	ANCESTRAL SPECIES	33	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555.a	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT01050000244940.a.a.j.a	ENSGT00940000155223.a.b	ENSGT00940000155223.b	ENSGT00940000159622	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Wallaby	MODERN SPECIES	870																SPAG9 (ENSMEUG00000015166) ##22
Diprotodontia_a	ANCESTRAL SPECIES	32	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555.a	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT01050000244940.a.a.j.a	ENSGT00940000155223.a.b	ENSGT00940000155223.b	ENSGT00940000159622	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569.wb	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158206.e	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664.a	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a
koala	MODERN SPECIES	230										CA10 (ENSPCIG00000000719)	ENSPCIG00000032327	UTP18 (ENSPCIG00000000695)	MBTD1 (ENSPCIG00000000651)	NME2 (ENSPCIG00000031073)	NME1 (ENSPCIG00000000603)	SPAG9 (ENSPCIG00000022781) ##22	ENSPCIG00000013674	TOB1 (ENSPCIG00000030166)	WFIKKN2 (ENSPCIG00000030168)	ENSPCIG00000030170	LUC7L3 (ENSPCIG00000012372)	ANKRD40 (ENSPCIG00000012374)	ENSPCIG00000030174	CACNA1G (ENSPCIG00000030193)	ENSPCIG00000032449	SPATA20 (ENSPCIG00000030204)	EPN3 (ENSPCIG00000030206)	MYCBPAP (ENSPCIG00000030210)	RSAD1 (ENSPCIG00000030214)	CHAD (ENSPCIG00000030226)	ACSF2 (ENSPCIG00000030219)
Common wonbat	MODERN SPECIES	1034	SMIM36 (ENSVURG00010013672)	ENSVURG00010013684	ENSVURG00010013698	STXBP4 (ENSVURG00010013723)	ENSVURG00010013745	KIF2B (ENSVURG00010013754)	ENSVURG00010013761	ENSVURG00010013770	ENSVURG00010013776	CA10 (ENSVURG00010013781)	ENSVURG00010013794	UTP18 (ENSVURG00010013804)	MBTD1 (ENSVURG00010013815)	NME2 (ENSVURG00010013834)	NME1 (ENSVURG00010013853)	SPAG9 (ENSVURG00010013867) ##22	ENSVURG00010013931	TOB1 (ENSVURG00010013935)	WFIKKN2 (ENSVURG00010013937)	ENSVURG00010013940	ENSVURG00010013942	LUC7L3 (ENSVURG00010013948)	ENSVURG00010014322	MYCBPAP (ENSVURG00010021400)	RSAD1 (ENSVURG00010021420)	ACSF2 (ENSVURG00010021431)	CHAD (ENSVURG00010021444)	LRRC59 (ENSVURG00010021447)	EME1 (ENSVURG00010021452) ##25	MRPL27 (ENSVURG00010021457)	XYLT2 (ENSVURG00010021461)
Tasmanian devil	MODERN SPECIES	3	NOG (ENSSHAG00000025585)	ANKFN1 (ENSSHAG00000008960)	PCTP (ENSSHAG00000020681)	ENSSHAG00000021921	MMD (ENSSHAG00000031217)	ENSSHAG00000031570	ENSSHAG00000030237	STXBP4 (ENSSHAG00000016013)	TOM1L1 (ENSSHAG00000016556)	KIF2B (ENSSHAG00000007329)	CA10 (ENSSHAG00000011074)	ENSSHAG00000013719	UTP18 (ENSSHAG00000014070)	MBTD1 (ENSSHAG00000014242)	ENSSHAG00000014470	SPAG9 (ENSSHAG00000014888) ##22	TOB1 (ENSSHAG00000015761)	WFIKKN2 (ENSSHAG00000021968)	LUC7L3 (ENSSHAG00000016168)	ANKRD40 (ENSSHAG00000016288)	ENSSHAG00000016312	CACNA1G (ENSSHAG00000005640)	SPATA20 (ENSSHAG00000005339)	ENSSHAG00000004142	EPN3 (ENSSHAG00000004684)	RSAD1 (ENSSHAG00000002422)	CHAD (ENSSHAG00000001564)	ACSF2 (ENSSHAG00000001145)	LRRC59 (ENSSHAG00000022483)	EME1 (ENSSHAG00000004032) ##25	ENSSHAG00000004216
Opossum	MODERN SPECIES	1	STXBP4 (ENSMODG00000014863)	ENSMODG00000048803	TOM1L1 (ENSMODG00000014869)	ENSMODG00000014871	KIF2B (ENSMODG00000014874)	ENSMODG00000024474	ENSMODG00000014887	ENSMODG00000051355	ENSMODG00000033172	CA10 (ENSMODG00000012548)	ENSMODG00000028578	UTP18 (ENSMODG00000012558)	ENSMODG00000012572	NME2 (ENSMODG00000012580)	NME1 (ENSMODG00000028492)	SPAG9 (ENSMODG00000012665) ##22	ENSMODG00000012672	WFIKKN2 (ENSMODG00000012674)	ENSMODG00000038141	LUC7L3 (ENSMODG00000012711)	ANKRD40 (ENSMODG00000012727)	ENSMODG00000012730	ENSMODG00000003392	ZNHIT3 (ENSMODG00000003379)	MYO19 (ENSMODG00000003372)	GGNBP2 (ENSMODG00000003352)	ENSMODG00000040580	MRM1 (ENSMODG00000003307)	ENSMODG00000037875	AATF (ENSMODG00000003279)	ACACA (ENSMODG00000003240)
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153496.a.b ##22
Hedgehog	MODERN SPECIES	268																SPAG9 (ENSEEUG00000004385) ##22
Common shrew	MODERN SPECIES	7311																SPAG9 (ENSSARG00000001984) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Suina	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Chacoan peccary	MODERN SPECIES	145	ENSCWAG00000009884	TMEM100 (ENSCWAG00000010036)	SMIM36 (ENSCWAG00000010049)	MMD (ENSCWAG00000010067)	HLF (ENSCWAG00000010132)	STXBP4 (ENSCWAG00000010178)	COX11 (ENSCWAG00000010251)	TOM1L1 (ENSCWAG00000010303)	ENSCWAG00000010351	KIF2B (ENSCWAG00000010379)	CA10 (ENSCWAG00000010395)	UTP18 (ENSCWAG00000010499)	MBTD1 (ENSCWAG00000010559)	NME2 (ENSCWAG00000010611)	NME1 (ENSCWAG00000010656)	SPAG9 (ENSCWAG00000010738) ##22	TOB1 (ENSCWAG00000011408)	WFIKKN2 (ENSCWAG00000011423)	ANKRD40CL (ENSCWAG00000011466)	LUC7L3 (ENSCWAG00000011580)	ANKRD40 (ENSCWAG00000011640)	ABCC3 (ENSCWAG00000011693)	CACNA1G (ENSCWAG00000013050)	SPATA20 (ENSCWAG00000021972)	EPN3 (ENSCWAG00000021973)	MYCBPAP (ENSCWAG00000021974)	RSAD1 (ENSCWAG00000021975)	ACSF2 (ENSCWAG00000021976)	CHAD (ENSCWAG00000021977)	LRRC59 (ENSCWAG00000021978)	EME1 (ENSCWAG00000021979) ##25
Pig	MODERN SPECIES	3	MMD (ENSSSCG00000017605)	HLF (ENSSSCG00000017604)	STXBP4 (ENSSSCG00000017602)	COX11 (ENSSSCG00000031433)	TOM1L1 (ENSSSCG00000017601)	ENSSSCG00000047020	ENSSSCG00000048537	KIF2B (ENSSSCG00000017599)	CA10 (ENSSSCG00000023169)	ENSSSCG00000046490	UTP18 (ENSSSCG00000017593)	MBTD1 (ENSSSCG00000017592)	NME2 (ENSSSCG00000017591)	NME1 (ENSSSCG00000038348)	ENSSSCG00000045459	SPAG9 (ENSSSCG00000033228) ##22	WFIKKN2 (ENSSSCG00000017557)	ANKRD40CL (ENSSSCG00000017556)	LUC7L3 (ENSSSCG00000017555)	ENSSSCG00000055086	ANKRD40 (ENSSSCG00000038760)	ABCC3 (ENSSSCG00000017561)	CACNA1G (ENSSSCG00000017562)	SPATA20 (ENSSSCG00000017565)	EPN3 (ENSSSCG00000027226)	MYCBPAP (ENSSSCG00000017563)	RSAD1 (ENSSSCG00000017567)	CHAD (ENSSSCG00000017569)	ACSF2 (ENSSSCG00000017566)	ENSSSCG00000058743	LRRC59 (ENSSSCG00000028019)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.a.b	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555.d	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240.e.a	ENSGT00940000163180	ENSGT00940000155223.a.b	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00390000007225.g.a.b	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385.m	ENSGT00530000063937.a ##25
Odontoceti	ANCESTRAL SPECIES	16											ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00390000007225.g.a.b	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385.m	ENSGT00530000063937.a ##25
Odontoceti_a	ANCESTRAL SPECIES	14											ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00390000007225.g.a.b	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385.m	ENSGT00530000063937.a ##25
Odontoceti_b	ANCESTRAL SPECIES	16											ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00390000007225.g.a.b	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385.m	ENSGT00530000063937.a ##25
Monodontidae	ANCESTRAL SPECIES	16										ENSGT00530000063282.pb.a.b.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00390000007225.g.a.b	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a	ENSGT00390000017385.m
Narwhal	MODERN SPECIES	316	TAF15 (ENSMMNG00015018630)	MMP28 (ENSMMNG00015018658)	C17orf50 (ENSMMNG00015018683)	GAS2L2 (ENSMMNG00015018720)	RASL10B (ENSMMNG00015018782)	AP2B1 (ENSMMNG00015018876)	ENSMMNG00015019123	ENSMMNG00015019174	ENSMMNG00015019311	ENSMMNG00015019539	UTP18 (ENSMMNG00015019839)	MBTD1 (ENSMMNG00015019943)	NME1 (ENSMMNG00015019993)	ENSMMNG00015020026	ENSMMNG00015020040	SPAG9 (ENSMMNG00015020158) ##22	TOB1 (ENSMMNG00015020379)	WFIKKN2 (ENSMMNG00015020389)	ENSMMNG00015020406	LUC7L3 (ENSMMNG00015020441)	ANKRD40 (ENSMMNG00015020484)	ABCC3 (ENSMMNG00015020502)	CACNA1G (ENSMMNG00015021705)	SPATA20 (ENSMMNG00015022011)	EPN3 (ENSMMNG00015022013)	MYCBPAP (ENSMMNG00015022015)	RSAD1 (ENSMMNG00015022016)	ACSF2 (ENSMMNG00015022018)	CHAD (ENSMMNG00015022022)	ENSMMNG00015022023	ENSMMNG00015022024
Beluga whale	MODERN SPECIES	26	SPPL2C (ENSDLEG00000003788)	CRHR1 (ENSDLEG00000003774)	ENSDLEG00000003762	NSF (ENSDLEG00000003751)	WNT3 (ENSDLEG00000003747)	WNT9B (ENSDLEG00000003737)	GOSR2 (ENSDLEG00000003733)	RPRML (ENSDLEG00000003730)	ENSDLEG00000003728	LYZL6 (ENSDLEG00000003723)	ENSDLEG00000003716	UTP18 (ENSDLEG00000003708)	MBTD1 (ENSDLEG00000003691)	NME2 (ENSDLEG00000003681)	ENSDLEG00000003674	SPAG9 (ENSDLEG00000005756) ##22	TOB1 (ENSDLEG00000005734)	WFIKKN2 (ENSDLEG00000005727)	LUC7L3 (ENSDLEG00000005683)	ANKRD40 (ENSDLEG00000005670)	ABCC3 (ENSDLEG00000005407)	CACNA1G (ENSDLEG00000005351)	SPATA20 (ENSDLEG00000005330)	EPN3 (ENSDLEG00000005325)	MYCBPAP (ENSDLEG00000005299)	RSAD1 (ENSDLEG00000005284)	CHAD (ENSDLEG00000005274)	ACSF2 (ENSDLEG00000005263)	ENSDLEG00000005261	LRRC59 (ENSDLEG00000005255)	EME1 (ENSDLEG00000005249) ##25
Vaquita	MODERN SPECIES	12	ENSPSNG00000020497	ENSPSNG00000020551	ENSPSNG00000020619	ENSPSNG00000020639	ENSPSNG00000020657	ENSPSNG00000020693	ENSPSNG00000020758	ENSPSNG00000020878	ENSPSNG00000021206	ENSPSNG00000021217	UTP18 (ENSPSNG00000021239)	MBTD1 (ENSPSNG00000021287)	ENSPSNG00000021325	NME1 (ENSPSNG00000021355)	ENSPSNG00000021379	SPAG9 (ENSPSNG00000021447) ##22	TOB1 (ENSPSNG00000021620)	WFIKKN2 (ENSPSNG00000021631)	ANKRD40CL (ENSPSNG00000021670)	LUC7L3 (ENSPSNG00000021718)	ANKRD40 (ENSPSNG00000021733)	ABCC3 (ENSPSNG00000021787)	CACNA1G (ENSPSNG00000022489)	SPATA20 (ENSPSNG00000022613)	MYCBPAP (ENSPSNG00000022617)	RSAD1 (ENSPSNG00000022620)	ACSF2 (ENSPSNG00000022621)	CHAD (ENSPSNG00000022625)	LRRC59 (ENSPSNG00000013150)	EME1 (ENSPSNG00000013179) ##25	MRPL27 (ENSPSNG00000013243)
Dolphin	MODERN SPECIES	1988																SPAG9 (ENSTTRG00000002738) ##22	TOB1 (ENSTTRG00000002737)	WFIKKN2 (ENSTTRG00000002736)
Sperm whale	MODERN SPECIES	5	ENSPCTG00005014390	CA10 (ENSPCTG00005014413)	ENSPCTG00005014668	ENSPCTG00005015281	ENSPCTG00005015330	ENSPCTG00005015485	ENSPCTG00005015510	ENSPCTG00005015551	ENSPCTG00005015587	ENSPCTG00005015627	UTP18 (ENSPCTG00005015661)	MBTD1 (ENSPCTG00005015723)	NME2 (ENSPCTG00005015808)	NME1 (ENSPCTG00005015875)	ENSPCTG00005015932	SPAG9 (ENSPCTG00005016007) ##22	TOB1 (ENSPCTG00005016701)	WFIKKN2 (ENSPCTG00005016718)	ANKRD40CL (ENSPCTG00005016774)	LUC7L3 (ENSPCTG00005016897)	ANKRD40 (ENSPCTG00005016980)	ABCC3 (ENSPCTG00005017033)	CACNA1G (ENSPCTG00005018367)	SPATA20 (ENSPCTG00005022503)	ENSPCTG00005022511	MYCBPAP (ENSPCTG00005022515)	RSAD1 (ENSPCTG00005022518)	ACSF2 (ENSPCTG00005022522)	ENSPCTG00005022524	LRRC59 (ENSPCTG00005022526)	EME1 (ENSPCTG00005022527) ##25
Blue whale	MODERN SPECIES	12	PLCD3 (ENSBMSG00010017874)	ACBD4 (ENSBMSG00010017896)	HEXIM1 (ENSBMSG00010017902)	HEXIM2 (ENSBMSG00010017910)	FMNL1 (ENSBMSG00010017931)	ENSBMSG00010018050	ENSBMSG00010018079	MAP3K14 (ENSBMSG00010018112)	PLEKHM1 (ENSBMSG00010018204)	ENSBMSG00010018561	UTP18 (ENSBMSG00010018585)	MBTD1 (ENSBMSG00010018624)	NME2 (ENSBMSG00010018643)	NME1 (ENSBMSG00010018679)	ENSBMSG00010018699	SPAG9 (ENSBMSG00010018774) ##22	TOB1 (ENSBMSG00010019146)	WFIKKN2 (ENSBMSG00010019158)	ANKRD40CL (ENSBMSG00010019184)	ENSBMSG00010019224	ANKRD40 (ENSBMSG00010019258)	CACNA1G (ENSBMSG00010021057)	SPATA20 (ENSBMSG00010022486)	EPN3 (ENSBMSG00010022491)	MYCBPAP (ENSBMSG00010022497)	RSAD1 (ENSBMSG00010022500)	ACSF2 (ENSBMSG00010022503)	CHAD (ENSBMSG00010022506)	LRRC59 (ENSBMSG00010022507)	EME1 (ENSBMSG00010022508) ##25	MRPL27 (ENSBMSG00010022510)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00990000204089	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00990000204089	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Caprinae	ANCESTRAL SPECIES	1	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00990000204089	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Rambouillet Sheep	MODERN SPECIES	2	NT5M (ENSOARG00020026224)	COPS3 (ENSOARG00020026222)	FLCN (ENSOARG00020026219)	PLD6 (ENSOARG00020026218)	TNFRSF13B (ENSOARG00020026216)	USP22 (ENSOARG00020026213)	DHRS7B (ENSOARG00020026209)	TMEM11 (ENSOARG00020026207)	NATD1 (ENSOARG00020026204)	MAP2K3 (ENSOARG00020026202)	KCNJ12 (ENSOARG00020026201)	UTP18 (ENSOARG00020026199)	MBTD1 (ENSOARG00020026196)	NME2 (ENSOARG00020026194)	NME1 (ENSOARG00020026191)	SPAG9 (ENSOARG00020026178) ##22	ENSOARG00020026155	TOB1 (ENSOARG00020026153)	WFIKKN2 (ENSOARG00020026152)	ANKRD40CL (ENSOARG00020026151)	ANKRD40 (ENSOARG00020026149)	ABCC3 (ENSOARG00020026144)	CACNA1G (ENSOARG00020015735)	SPATA20 (ENSOARG00020014365)	EPN3 (ENSOARG00020014247)	LUC7L3 (ENSOARG00020014101)	MYCBPAP (ENSOARG00020013875)	RSAD1 (ENSOARG00020013799)	CHAD (ENSOARG00020013743)	ACSF2 (ENSOARG00020013282)	LRRC59 (ENSOARG00020013205)
Goat	MODERN SPECIES	10	COPS3 (ENSCHIG00000011762)	FLCN (ENSCHIG00000027232)	PLD6 (ENSCHIG00000011493)	MPRIP (ENSCHIG00000016471)	USP22 (ENSCHIG00000025194)	DHRS7B (ENSCHIG00000012767)	TMEM11 (ENSCHIG00000021154)	NATD1 (ENSCHIG00000014741)	MAP2K3 (ENSCHIG00000014144)	ENSCHIG00000010300	UTP18 (ENSCHIG00000011901)	MBTD1 (ENSCHIG00000025953)	NME2 (ENSCHIG00000021415)	NME1 (ENSCHIG00000017720)	ENSCHIG00000019182	SPAG9 (ENSCHIG00000023293) ##22	TOB1 (ENSCHIG00000003822)	WFIKKN2 (ENSCHIG00000020790)	ANKRD40CL (ENSCHIG00000002887)	LUC7L3 (ENSCHIG00000012671)	ANKRD40 (ENSCHIG00000019765)	ABCC3 (ENSCHIG00000014984)	CACNA1G (ENSCHIG00000008392)	SPATA20 (ENSCHIG00000013775)	EPN3 (ENSCHIG00000023207)	MYCBPAP (ENSCHIG00000018463)	RSAD1 (ENSCHIG00000024657)	ACSF2 (ENSCHIG00000026707)	CHAD (ENSCHIG00000013807)	LRRC59 (ENSCHIG00000008137)	EME1 (ENSCHIG00000016180) ##25
Bovinae	ANCESTRAL SPECIES		ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000166360	ENSGT00940000161491.d.j	ENSGT00940000162296	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l.a	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Bos	ANCESTRAL SPECIES	1	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000162296.ab	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000171652	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l.a	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Bos_a	ANCESTRAL SPECIES		ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT00940000165247	ENSGT00940000158171	ENSGT00390000006617	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000162296.ab	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000171652	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l.a	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Domestic yak	MODERN SPECIES	10	FLCN (ENSBGRG00000012604)	PLD6 (ENSBGRG00000012551)	ENSBGRG00000011768	TNFRSF13B (ENSBGRG00000011580)	USP22 (ENSBGRG00000011200)	ENSBGRG00000011145	DHRS7B (ENSBGRG00000010901)	TMEM11 (ENSBGRG00000010820)	MAP2K3 (ENSBGRG00000010601)	ENSBGRG00000010579	ENSBGRG00000010568	UTP18 (ENSBGRG00000010434)	MBTD1 (ENSBGRG00000010329)	NME2 (ENSBGRG00000010251)	NME1 (ENSBGRG00000010184)	SPAG9 (ENSBGRG00000009172) ##22	TOB1 (ENSBGRG00000009103)	WFIKKN2 (ENSBGRG00000009054)	ENSBGRG00000008970	LUC7L3 (ENSBGRG00000008710)	ANKRD40 (ENSBGRG00000008673)	ENSBGRG00000008662	ABCC3 (ENSBGRG00000008314)	CACNA1G (ENSBGRG00000007753)	SPATA20 (ENSBGRG00000007324)	EPN3 (ENSBGRG00000007020)	ENSBGRG00000006975	MYCBPAP (ENSBGRG00000006682)	RSAD1 (ENSBGRG00000006561)	CHAD (ENSBGRG00000006506)	ACSF2 (ENSBGRG00000006209)
Wild yak	MODERN SPECIES	319												UTP18 (ENSBMUG00000018878)	MBTD1 (ENSBMUG00000018923)	ENSBMUG00000018942	NME1 (ENSBMUG00000018966)	SPAG9 (ENSBMUG00000019185) ##22	ENSBMUG00000019217	TOB1 (ENSBMUG00000019231)	WFIKKN2 (ENSBMUG00000019244)	ENSBMUG00000019304	LUC7L3 (ENSBMUG00000019358)	ANKRD40 (ENSBMUG00000019386)	ABCC3 (ENSBMUG00000019422)	CACNA1G (ENSBMUG00000021324)	SPATA20 (ENSBMUG00000021962)	EPN3 (ENSBMUG00000021977)	MYCBPAP (ENSBMUG00000021987)	RSAD1 (ENSBMUG00000022000)	ACSF2 (ENSBMUG00000022074)	CHAD (ENSBMUG00000022113)	LRRC59 (ENSBMUG00000022125)
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000171652	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l.a	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00390000018141.i.a.b.a.b.b	ENSGT00940000161624	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.b.a.b.b.b	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830
Cow	MODERN SPECIES	10	COPS3 (ENSBTAG00000018973)	FLCN (ENSBTAG00000008010)	PLD6 (ENSBTAG00000008009)	MPRIP (ENSBTAG00000010534)	TNFRSF13B (ENSBTAG00000015298)	USP22 (ENSBTAG00000008978)	DHRS7B (ENSBTAG00000010559)	ENSBTAG00000054307	TMEM11 (ENSBTAG00000010566)	MAP2K3 (ENSBTAG00000010576)	KCNJ12 (ENSBTAG00000020061)	UTP18 (ENSBTAG00000020629)	MBTD1 (ENSBTAG00000009407)	NME2 (ENSBTAG00000047186)	NME1 (ENSBTAG00000004651)	SPAG9 (ENSBTAG00000012293) ##22	ENSBTAG00000049579	TOB1 (ENSBTAG00000000546)	WFIKKN2 (ENSBTAG00000000731)	ANKRD40CL (ENSBTAG00000025183)	LUC7L3 (ENSBTAG00000002279)	ANKRD40 (ENSBTAG00000002267)	ENSBTAG00000053257	ABCC3 (ENSBTAG00000020070)	ENSBTAG00000054449	CACNA1G (ENSBTAG00000009835)	SPATA20 (ENSBTAG00000004155)	EPN3 (ENSBTAG00000015893)	MYCBPAP (ENSBTAG00000014355)	RSAD1 (ENSBTAG00000021303)	ACSF2 (ENSBTAG00000021301)
Hybrid Bos Indicus	MODERN SPECIES	10	FLCN (ENSBIXG00005012063)	PLD6 (ENSBIXG00005012037)	MPRIP (ENSBIXG00005011986)	TNFRSF13B (ENSBIXG00005011812)	USP22 (ENSBIXG00005011779)	DHRS7B (ENSBIXG00005001153)	ENSBIXG00005011691	TMEM11 (ENSBIXG00005011680)	NATD1 (ENSBIXG00005011670)	MAP2K3 (ENSBIXG00005011654)	ENSBIXG00005011632	UTP18 (ENSBIXG00005001133)	ENSBIXG00005011537	MBTD1 (ENSBIXG00005000449)	NME2 (ENSBIXG00005005816)	SPAG9 (ENSBIXG00005005379) ##22	ENSBIXG00005011012	TOB1 (ENSBIXG00005011003)	WFIKKN2 (ENSBIXG00005010983)	ENSBIXG00005006203	LUC7L3 (ENSBIXG00005000966)	ANKRD40 (ENSBIXG00005010739)	ENSBIXG00005010721	ABCC3 (ENSBIXG00005010704)	ENSBIXG00005010655	CACNA1G (ENSBIXG00005010472)	SPATA20 (ENSBIXG00005009303)	EPN3 (ENSBIXG00005009285)	MYCBPAP (ENSBIXG00005009257)	RSAD1 (ENSBIXG00005009215)	ACSF2 (ENSBIXG00005009154)
American bison	MODERN SPECIES	3101	PLD6 (ENSBBBG00000003502)	ENSBBBG00000015417	ENSBBBG00000015430	USP22 (ENSBBBG00000015447)	ENSBBBG00000015455	DHRS7B (ENSBBBG00000003852)	TMEM11 (ENSBBBG00000003854)	NATD1 (ENSBBBG00000015477)	MAP2K3 (ENSBBBG00000003861)	ENSBBBG00000015512	ENSBBBG00000006843	UTP18 (ENSBBBG00000015533)	MBTD1 (ENSBBBG00000015576)	ENSBBBG00000006994	NME1 (ENSBBBG00000015608)	SPAG9 (ENSBBBG00000015857) ##22	TOB1 (ENSBBBG00000015888)	WFIKKN2 (ENSBBBG00000000777)	ENSBBBG00000015925	LUC7L3 (ENSBBBG00000002578)	ANKRD40 (ENSBBBG00000003977)	ABCC3 (ENSBBBG00000016002)	CACNA1G (ENSBBBG00000020028)	SPATA20 (ENSBBBG00000020250)	EPN3 (ENSBBBG00000020260)	MYCBPAP (ENSBBBG00000000703)	RSAD1 (ENSBBBG00000000668)	CHAD (ENSBBBG00000000642)	ACSF2 (ENSBBBG00000000555)	LRRC59 (ENSBBBG00000000544)	EME1 (ENSBBBG00000020418) ##25
Siberian musk deer	MODERN SPECIES	1210	PLD6 (ENSMMSG00000016404)	MPRIP (ENSMMSG00000016476)	TNFRSF13B (ENSMMSG00000016808)	USP22 (ENSMMSG00000016916)	DHRS7B (ENSMMSG00000016978)	TMEM11 (ENSMMSG00000017004)	NATD1 (ENSMMSG00000017018)	MAP2K3 (ENSMMSG00000017043)	ENSMMSG00000017081	UTP18 (ENSMMSG00000017091)	MBTD1 (ENSMMSG00000017124)	ENSMMSG00000017175	ENSMMSG00000017195	NME1 (ENSMMSG00000017238)	ENSMMSG00000017275	SPAG9 (ENSMMSG00000017328) ##22	TOB1 (ENSMMSG00000017677)	WFIKKN2 (ENSMMSG00000017692)	ANKRD40CL (ENSMMSG00000017719)	LUC7L3 (ENSMMSG00000017767)	ENSMMSG00000017814	ANKRD40 (ENSMMSG00000017837)	ABCC3 (ENSMMSG00000017877)	CACNA1G (ENSMMSG00000019001)	SPATA20 (ENSMMSG00000024429)	EPN3 (ENSMMSG00000024431)	MYCBPAP (ENSMMSG00000024432)	RSAD1 (ENSMMSG00000024434)	ACSF2 (ENSMMSG00000024435)	CHAD (ENSMMSG00000024437)	LRRC59 (ENSMMSG00000024438)
Yarkand deer	MODERN SPECIES	28	FLCN (ENSCHYG00000025763)	PLD6 (ENSCHYG00000025777)	MPRIP (ENSCHYG00000000161)	ENSCHYG00000000291	TNFRSF13B (ENSCHYG00000000313)	USP22 (ENSCHYG00000000335)	DHRS7B (ENSCHYG00000000373)	TMEM11 (ENSCHYG00000000398)	MAP2K3 (ENSCHYG00000000425)	ENSCHYG00000000477	UTP18 (ENSCHYG00000000487)	MBTD1 (ENSCHYG00000000538)	NME2 (ENSCHYG00000000563)	NME1 (ENSCHYG00000000589)	ENSCHYG00000000611	SPAG9 (ENSCHYG00000000639) ##22	TOB1 (ENSCHYG00000000856)	WFIKKN2 (ENSCHYG00000000860)	ENSCHYG00000000863	ANKRD40CL (ENSCHYG00000000877)	LUC7L3 (ENSCHYG00000000913)	ENSCHYG00000000952	ABCC3 (ENSCHYG00000000970)	CACNA1G (ENSCHYG00000001327)	SPATA20 (ENSCHYG00000002682)	EPN3 (ENSCHYG00000002727)	MYCBPAP (ENSCHYG00000002753)	RSAD1 (ENSCHYG00000002873)	ACSF2 (ENSCHYG00000002936)	CHAD (ENSCHYG00000003066)	LRRC59 (ENSCHYG00000003075)
Camelidae	ANCESTRAL SPECIES	102														ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Alpaca	MODERN SPECIES	3128														ENSVPAG00000004080	NME2 (ENSVPAG00000004079)	SPAG9 (ENSVPAG00000004074) ##22
Arabian camel	MODERN SPECIES	7	KRT19 (ENSCDRG00005011031)	ENSCDRG00005011084	KRT14 (ENSCDRG00005011145)	KRT17 (ENSCDRG00005011420)	ENSCDRG00005011549	EIF1 (ENSCDRG00005011615)	GAST (ENSCDRG00005011677)	HAP1 (ENSCDRG00005011720)	JUP (ENSCDRG00005003373)	FKBP10 (ENSCDRG00005003410)	ENSCDRG00005003445	MBTD1 (ENSCDRG00005003547)	ENSCDRG00005003645	ENSCDRG00005003757	NME1 (ENSCDRG00005003807)	SPAG9 (ENSCDRG00005003908) ##22	TOB1 (ENSCDRG00005004090)	WFIKKN2 (ENSCDRG00005004111)	ANKRD40CL (ENSCDRG00005004137)	LUC7L3 (ENSCDRG00005004195)	ANKRD40 (ENSCDRG00005004421)	ABCC3 (ENSCDRG00005004448)	CACNA1G (ENSCDRG00005005492)	SPATA20 (ENSCDRG00005022016)	EPN3 (ENSCDRG00005022028)	MYCBPAP (ENSCDRG00005022030)	RSAD1 (ENSCDRG00005022035)	ACSF2 (ENSCDRG00005022041)	CHAD (ENSCDRG00005022048)	LRRC59 (ENSCDRG00005022053)	EME1 (ENSCDRG00005022055) ##25
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000159856	ENSGT00940000156843.o.a	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000163317	ENSGT00390000003248.b	ENSGT00940000153496.a.b ##22	ENSGT00940000157455.b.d.b	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00390000016988.a.a.a.b.a.b.a.b	ENSGT00940000156843.o.b	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213.b	ENSGT00940000162213.a.a.d	ENSGT00940000153496.a.b ##22	ENSGT00940000157455.b.d.b	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385
Dog	MODERN SPECIES	37	MMD (ENSCAFG00845016643)	HLF (ENSCAFG00845016598)	STXBP4 (ENSCAFG00845016430)	COX11 (ENSCAFG00845016207)	TOM1L1 (ENSCAFG00845016013)	ENSCAFG00845015952	ENSCAFG00845015932	ENSCAFG00845015890	KIF2B (ENSCAFG00845015752)	CA10 (ENSCAFG00845015639)	ENSCAFG00845015581	UTP18 (ENSCAFG00845015483)	MBTD1 (ENSCAFG00845015245)	NME2 (ENSCAFG00845015173)	NME1 (ENSCAFG00845015140)	SPAG9 (ENSCAFG00845014917) ##22	TOB1 (ENSCAFG00845014836)	WFIKKN2 (ENSCAFG00845014826)	ENSCAFG00845014801	LUC7L3 (ENSCAFG00845014680)	ANKRD40 (ENSCAFG00845014612)	ABCC3 (ENSCAFG00845014515)	CACNA1G (ENSCAFG00845013736)	SPATA20 (ENSCAFG00845013287)	EPN3 (ENSCAFG00845013193)	MYCBPAP (ENSCAFG00845013038)	RSAD1 (ENSCAFG00845012992)	CHAD (ENSCAFG00845012965)	CACNA1G (ENSCAFG00845012854)	LRRC59 (ENSCAFG00845012791)	EME1 (ENSCAFG00845012727) ##25
Dingo	MODERN SPECIES	150	MMD (ENSCAFG00020025586)	HLF (ENSCAFG00020025583)	STXBP4 (ENSCAFG00020025560)	COX11 (ENSCAFG00020025550)	TOM1L1 (ENSCAFG00020025548)	ENSCAFG00020025544	KIF2B (ENSCAFG00020025537)	ENSCAFG00020025530	CA10 (ENSCAFG00020025515)	ENSCAFG00020025508	UTP18 (ENSCAFG00020025506)	MBTD1 (ENSCAFG00020025501)	ENSCAFG00020025499	ENSCAFG00020025497	ENSCAFG00020025495	SPAG9 (ENSCAFG00020024319) ##22	ENSCAFG00020024228	TOB1 (ENSCAFG00020024227)	WFIKKN2 (ENSCAFG00020024226)	ANKRD40CL (ENSCAFG00020024224)	LUC7L3 (ENSCAFG00020024223)	ANKRD40 (ENSCAFG00020024222)	ENSCAFG00020024221	ENSCAFG00020024216	CACNA1G (ENSCAFG00020023914)	SPATA20 (ENSCAFG00020023695)	EPN3 (ENSCAFG00020023656)	MYCBPAP (ENSCAFG00020023568)	RSAD1 (ENSCAFG00020023548)	CHAD (ENSCAFG00020023544)	ACSF2 (ENSCAFG00020023536)
Red fox	MODERN SPECIES	20	ENSVVUG00000011557	TMEM100 (ENSVVUG00000011549)	MMD (ENSVVUG00000011541)	HLF (ENSVVUG00000011529)	ENSVVUG00000011526	STXBP4 (ENSVVUG00000011517)	COX11 (ENSVVUG00000011512)	TOM1L1 (ENSVVUG00000011490)	KIF2B (ENSVVUG00000011478)	CA10 (ENSVVUG00000011449)	ENSVVUG00000011416	UTP18 (ENSVVUG00000011400)	MBTD1 (ENSVVUG00000011391)	ENSVVUG00000011331	ENSVVUG00000011323	SPAG9 (ENSVVUG00000011253) ##22	ENSVVUG00000011224	TOB1 (ENSVVUG00000011221)	WFIKKN2 (ENSVVUG00000011216)	ANKRD40CL (ENSVVUG00000011120)	LUC7L3 (ENSVVUG00000011112)	ANKRD40 (ENSVVUG00000011107)	ENSVVUG00000011100	ENSVVUG00000010988	CACNA1G (ENSVVUG00000005188)	SPATA20 (ENSVVUG00000004940)	EPN3 (ENSVVUG00000004919)	MYCBPAP (ENSVVUG00000004875)	RSAD1 (ENSVVUG00000004823)	CHAD (ENSVVUG00000004817)	ACSF2 (ENSVVUG00000004793)
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.a.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
American mink	MODERN SPECIES	92	TM100 (ENSNVIG00000012117)	SMIM36 (ENSNVIG00000012112)	MMD (ENSNVIG00000012081)	HLF (ENSNVIG00000012066)	STXBP4 (ENSNVIG00000012026)	COX11 (ENSNVIG00000012012)	TOM1L1 (ENSNVIG00000011956)	ENSNVIG00000011929	KIF2B (ENSNVIG00000011908)	CA10 (ENSNVIG00000011875)	UTP18 (ENSNVIG00000011842)	MBTD1 (ENSNVIG00000011807)	NME2 (ENSNVIG00000011788)	ENSNVIG00000011774	ENSNVIG00000011756	SPAG9 (ENSNVIG00000011476) ##22	TOB1 (ENSNVIG00000011447)	WFIKKN2 (ENSNVIG00000011437)	ANKRD40CL (ENSNVIG00000011421)	LUC7L3 (ENSNVIG00000011376)	ANKRD40 (ENSNVIG00000011348)	ABCC3 (ENSNVIG00000011305)	CACNA1G (ENSNVIG00000008177)	SPATA20 (ENSNVIG00000007983)	EPN3 (ENSNVIG00000007933)	MYCBPAP (ENSNVIG00000007622)	RSAD1 (ENSNVIG00000007570)	CHAD (ENSNVIG00000007549)	ACSF2 (ENSNVIG00000007468)	LRRC59 (ENSNVIG00000007451)	EME1 (ENSNVIG00000007424) ##25
Ferret	MODERN SPECIES	270										ENSMPUG00000015612	CA10 (ENSMPUG00000015610)	UTP18 (ENSMPUG00000015582)	MBTD1 (ENSMPUG00000015580)	NME2 (ENSMPUG00000015573)	NME1 (ENSMPUG00000015559)	SPAG9 (ENSMPUG00000015555) ##22	TOB1 (ENSMPUG00000020088)	WFIKKN2 (ENSMPUG00000015554)	ENSMPUG00000015552	ANKRD40CL (ENSMPUG00000015550)	LUC7L3 (ENSMPUG00000015532)	ANKRD40 (ENSMPUG00000015517)	ABCC3 (ENSMPUG00000015510)	CACNA1G (ENSMPUG00000015502)	SPATA20 (ENSMPUG00000015483)	EPN3 (ENSMPUG00000015482)	MYCBPAP (ENSMPUG00000015480)	RSAD1 (ENSMPUG00000015479)	CHAD (ENSMPUG00000015476)	ACSF2 (ENSMPUG00000015456)	LRRC59 (ENSMPUG00000015455)
Ursidae	ANCESTRAL SPECIES	18	ENSGT00390000006009.a.a.a	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b.j	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Giant Panda	MODERN SPECIES	4	ANKFN1 (ENSAMEG00000002831)	ENSAMEG00000029089	TMEM100 (ENSAMEG00000020050)	ENSAMEG00000019806	SMIM36 (ENSAMEG00000026714)	MMD (ENSAMEG00000014728)	HLF (ENSAMEG00000014714)	STXBP4 (ENSAMEG00000014697)	COX11 (ENSAMEG00000025314)	TOM1L1 (ENSAMEG00000014662)	KIF2B (ENSAMEG00000004637)	CA10 (ENSAMEG00000016952)	UTP18 (ENSAMEG00000008097)	MBTD1 (ENSAMEG00000008054)	ENSAMEG00000008022	SPAG9 (ENSAMEG00000007856) ##22	TOB1 (ENSAMEG00000020123)	WFIKKN2 (ENSAMEG00000007848)	ANKRD40CL (ENSAMEG00000007841)	LUC7L3 (ENSAMEG00000007790)	ANKRD40 (ENSAMEG00000007780)	ABCC3 (ENSAMEG00000007602)	CACNA1G (ENSAMEG00000007344)	SPATA20 (ENSAMEG00000007546)	EPN3 (ENSAMEG00000029713)	MYCBPAP (ENSAMEG00000011756)	RSAD1 (ENSAMEG00000011792)	ACSF2 (ENSAMEG00000011804)	CHAD (ENSAMEG00000011848)	LRRC59 (ENSAMEG00000011852)	EME1 (ENSAMEG00000011867) ##25
Ursus	ANCESTRAL SPECIES	67										ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.a.a	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b.j	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Polar bear	MODERN SPECIES	94										KIF2B (ENSUMAG00000012459)	CA10 (ENSUMAG00000012475)	UTP18 (ENSUMAG00000012481)	MBTD1 (ENSUMAG00000012486)	ENSUMAG00000012495	ENSUMAG00000012496	SPAG9 (ENSUMAG00000012685) ##22	TOB1 (ENSUMAG00000014045)	WFIKKN2 (ENSUMAG00000014047)	ANKRD40CL (ENSUMAG00000014050)	LUC7L3 (ENSUMAG00000014056)	ANKRD40 (ENSUMAG00000014067)	ABCC3 (ENSUMAG00000014139)	ENSUMAG00000014702	SPATA20 (ENSUMAG00000014717)	ENSUMAG00000014739	MYCBPAP (ENSUMAG00000014745)	RSAD1 (ENSUMAG00000014768)	ACSF2 (ENSUMAG00000014777)	CHAD (ENSUMAG00000014785)	LRRC59 (ENSUMAG00000014791)	EME1 (ENSUMAG00000014813) ##25
American black bear	DUPLICATION
American black bear	MODERN SPECIES	2854																ENSUAMG00000012879 ##22
American black bear	MODERN SPECIES	7001																ENSUAMG00000016166 ##22
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Cat	MODERN SPECIES	245	PCTP (ENSFCAG00000023287)	TMEM100 (ENSFCAG00000000669)	SMIM36 (ENSFCAG00000048835)	MMD (ENSFCAG00000028125)	ENSFCAG00000048840	HLF (ENSFCAG00000022556)	STXBP4 (ENSFCAG00000025758)	COX11 (ENSFCAG00000034565)	TOM1L1 (ENSFCAG00000002879)	KIF2B (ENSFCAG00000030590)	CA10 (ENSFCAG00000002278)	UTP18 (ENSFCAG00000031396)	MBTD1 (ENSFCAG00000006743)	NME2 (ENSFCAG00000036705)	NME1 (ENSFCAG00000044593)	SPAG9 (ENSFCAG00000006740) ##22	TOB1 (ENSFCAG00000029367)	WFIKKN2 (ENSFCAG00000029597)	LUC7L3 (ENSFCAG00000012343)	ANKRD40 (ENSFCAG00000043849)	ABCC3 (ENSFCAG00000012340)	CACNA1G (ENSFCAG00000012339)	SPATA20 (ENSFCAG00000012338)	EPN3 (ENSFCAG00000012337)	MYCBPAP (ENSFCAG00000012336)	RSAD1 (ENSFCAG00000012335)	ACSF2 (ENSFCAG00000012334)	CHAD (ENSFCAG00000011301)	LRRC59 (ENSFCAG00000031770)	EME1 (ENSFCAG00000012332) ##25	MRPL27 (ENSFCAG00000037928)
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Tiger	MODERN SPECIES	247	ANKFN1 (ENSPTIG00000016949)	PCTP (ENSPTIG00000016455)	TMEM100 (ENSPTIG00000001263)	SMIM36 (ENSPTIG00000001252)	MMD (ENSPTIG00000014918)	HLF (ENSPTIG00000013852)	STXBP4 (ENSPTIG00000010134)	COX11 (ENSPTIG00000009787)	TOM1L1 (ENSPTIG00000021730)	KIF2B (ENSPTIG00000020627)	CA10 (ENSPTIG00000016926)	UTP18 (ENSPTIG00000015069)	MBTD1 (ENSPTIG00000010915)	NME2 (ENSPTIG00000008426)	NME1 (ENSPTIG00000020171)	SPAG9 (ENSPTIG00000018617) ##22	WFIKKN2 (ENSPTIG00000017205)	ENSPTIG00000016714	LUC7L3 (ENSPTIG00000014247)	ANKRD40 (ENSPTIG00000013823)	ENSPTIG00000013501	CACNA1G (ENSPTIG00000010136)	SPATA20 (ENSPTIG00000019966)	ENSPTIG00000018414	MYCBPAP (ENSPTIG00000014495)	RSAD1 (ENSPTIG00000013143)	CHAD (ENSPTIG00000012789)	ACSF2 (ENSPTIG00000006315)	LRRC59 (ENSPTIG00000005798)	EME1 (ENSPTIG00000019912) ##25	MRPL27 (ENSPTIG00000019684)
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
lion	MODERN SPECIES	14	ANKFN1 (ENSPLOG00000015173)	PCTP (ENSPLOG00000005538)	TMEM100 (ENSPLOG00000005580)	SMIM36 (ENSPLOG00000005592)	MMD (ENSPLOG00000005613)	HLF (ENSPLOG00000005641)	STXBP4 (ENSPLOG00000005684)	COX11 (ENSPLOG00000005723)	TOM1L1 (ENSPLOG00000005775)	KIF2B (ENSPLOG00000005886)	CA10 (ENSPLOG00000005944)	UTP18 (ENSPLOG00000006035)	MBTD1 (ENSPLOG00000006133)	NME2 (ENSPLOG00000006166)	NME1 (ENSPLOG00000006214)	SPAG9 (ENSPLOG00000006351) ##22	TOB1 (ENSPLOG00000006574)	WFIKKN2 (ENSPLOG00000006588)	LUC7L3 (ENSPLOG00000006670)	ANKRD40 (ENSPLOG00000006752)	ABCC3 (ENSPLOG00000006861)	CACNA1G (ENSPLOG00000008708)	SPATA20 (ENSPLOG00000018033)	EPN3 (ENSPLOG00000018503)	MYCBPAP (ENSPLOG00000018604)	RSAD1 (ENSPLOG00000018765)	ACSF2 (ENSPLOG00000018860)	CHAD (ENSPLOG00000018910)	LRRC59 (ENSPLOG00000018949)	EME1 (ENSPLOG00000018985) ##25	MRPL27 (ENSPLOG00000019107)
leopard	MODERN SPECIES	67	ANKFN1 (ENSPPRG00000024449)	PCTP (ENSPPRG00000016895)	TMEM100 (ENSPPRG00000021594)	SMIM36 (ENSPPRG00000021579)	MMD (ENSPPRG00000016045)	HLF (ENSPPRG00000015612)	STXBP4 (ENSPPRG00000014766)	COX11 (ENSPPRG00000010750)	TOM1L1 (ENSPPRG00000010683)	KIF2B (ENSPPRG00000008742)	CA10 (ENSPPRG00000008658)	UTP18 (ENSPPRG00000007701)	MBTD1 (ENSPPRG00000007140)	NME2 (ENSPPRG00000005581)	NME1 (ENSPPRG00000004142)	SPAG9 (ENSPPRG00000003342) ##22	WFIKKN2 (ENSPPRG00000002737)	LUC7L3 (ENSPPRG00000002605)	ANKRD40 (ENSPPRG00000001942)	CACNA1G (ENSPPRG00000014704)	SPATA20 (ENSPPRG00000003620)	EPN3 (ENSPPRG00000000303)	MYCBPAP (ENSPPRG00000020455)	RSAD1 (ENSPPRG00000014726)	ACSF2 (ENSPPRG00000013112)	CHAD (ENSPPRG00000011428)	LRRC59 (ENSPPRG00000010949)	EME1 (ENSPPRG00000010883) ##25	MRPL27 (ENSPPRG00000009444)	XYLT2 (ENSPPRG00000009115)	TMEM92 (ENSPPRG00000007766)
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Equus	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843.m	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385.o	ENSGT00530000063937.a ##25
Donkey	MODERN SPECIES	4	ENSEASG00005028142	ENSEASG00005026345	TMEM100 (ENSEASG00005036961)	SMIM36 (ENSEASG00005025584)	MMD (ENSEASG00005016791)	HLF (ENSEASG00005033283)	STXBP4 (ENSEASG00005016828)	COX11 (ENSEASG00005016863)	TOM1L1 (ENSEASG00005016866)	KIF2B (ENSEASG00005016874)	CA10 (ENSEASG00005016878)	UTP18 (ENSEASG00005016882)	MBTD1 (ENSEASG00005016892)	NME2 (ENSEASG00005016923)	ENSEASG00005016928	SPAG9 (ENSEASG00005016929) ##22	ENSEASG00005026323	TOB1 (ENSEASG00005025637)	WFIKKN2 (ENSEASG00005036469)	ANKRD40CL (ENSEASG00005033595)	LUC7L3 (ENSEASG00005016944)	ANKRD40 (ENSEASG00005016954)	ABCC3 (ENSEASG00005017052)	CACNA1G (ENSEASG00005017449)	SPATA20 (ENSEASG00005018475)	EPN3 (ENSEASG00005018586)	MYCBPAP (ENSEASG00005018597)	RSAD1 (ENSEASG00005018609)	ACSF2 (ENSEASG00005018611)	CHAD (ENSEASG00005018613)	ENSEASG00005018614
Horse	MODERN SPECIES	2	ENSECAG00000060362	TMEM100 (ENSECAG00000019376)	SMIM36 (ENSECAG00000042426)	ENSECAG00000029510	MMD (ENSECAG00000017588)	HLF (ENSECAG00000016953)	STXBP4 (ENSECAG00000016386)	COX11 (ENSECAG00000015531)	TOM1L1 (ENSECAG00000014174)	KIF2B (ENSECAG00000002842)	CA10 (ENSECAG00000013061)	UTP18 (ENSECAG00000008260)	NME2 (ENSECAG00000021658)	MBTD1 (ENSECAG00000022700)	ENSECAG00000059404	SPAG9 (ENSECAG00000015256) ##22	TOB1 (ENSECAG00000002814)	WFIKKN2 (ENSECAG00000015064)	ANKRD40CL (ENSECAG00000050391)	LUC7L3 (ENSECAG00000012760)	ANKRD40 (ENSECAG00000012574)	ABCC3 (ENSECAG00000001014)	CACNA1G (ENSECAG00000015461)	SPATA20 (ENSECAG00000008281)	EPN3 (ENSECAG00000004484)	MYCBPAP (ENSECAG00000000721)	RSAD1 (ENSECAG00000023248)	CHAD (ENSECAG00000053781)	ACSF2 (ENSECAG00000019245)	ENSECAG00000018072	MRPL27 (ENSECAG00000016779)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000163317	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Greater horseshoe bat	MODERN SPECIES	13	TMEM100 (ENSRFEG00010007151)	SMIM36 (ENSRFEG00010007172)	MMD (ENSRFEG00010007200)	ENSRFEG00010007249	STXBP4 (ENSRFEG00010007289)	ENSRFEG00010007436	COX11 (ENSRFEG00010007472)	TOM1L1 (ENSRFEG00010007508)	KIF2B (ENSRFEG00010007638)	ENSRFEG00010007658	CA10 (ENSRFEG00010007712)	ENSRFEG00010007794	UTP18 (ENSRFEG00010007828)	MBTD1 (ENSRFEG00010007877)	ENSRFEG00010007940	SPAG9 (ENSRFEG00010008211) ##22	TOB1 (ENSRFEG00010008504)	WFIKKN2 (ENSRFEG00010008523)	LUC7L3 (ENSRFEG00010008675)	ANKRD40 (ENSRFEG00010008756)	ABCC3 (ENSRFEG00010008811)	CACNA1G (ENSRFEG00010010093)	SPATA20 (ENSRFEG00010020941)	EPN3 (ENSRFEG00010020995)	ENSRFEG00010021013	RSAD1 (ENSRFEG00010021041)	ACSF2 (ENSRFEG00010021075)	CHAD (ENSRFEG00010021182)	LRRC59 (ENSRFEG00010021200)	EME1 (ENSRFEG00010021215) ##25	MRPL27 (ENSRFEG00010021224)
Microbat	MODERN SPECIES	1371											TMEM132E (ENSMLUG00000001054)	ENSMLUG00000010844	UTP18 (ENSMLUG00000016938)	MBTD1 (ENSMLUG00000016933)	ENSMLUG00000016929	SPAG9 (ENSMLUG00000013525) ##22	TOB1 (ENSMLUG00000005651)	WFIKKN2 (ENSMLUG00000005648)	ENSMLUG00000005637	ANKRD40 (ENSMLUG00000005626)	ABCC3 (ENSMLUG00000005613)	CACNA1G (ENSMLUG00000005593)	SPATA20 (ENSMLUG00000005575)	EPN3 (ENSMLUG00000005571)	MYCBPAP (ENSMLUG00000005561)	RSAD1 (ENSMLUG00000001099)
Megabat	MODERN SPECIES	3949												CA10 (ENSPVAG00000013905)	UTP18 (ENSPVAG00000013904)	MBTD1 (ENSPVAG00000013903)	ENSPVAG00000013901	SPAG9 (ENSPVAG00000013899) ##22	TOB1 (ENSPVAG00000013898)	WFIKKN2 (ENSPVAG00000013897)	LUC7L3 (ENSPVAG00000013895)
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Primates	ANCESTRAL SPECIES	3	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Vervet Monkey	MODERN SPECIES	7	ENSCSAG00000000546	MMD (ENSCSAG00000005559)	HLF (ENSCSAG00000005557)	STXBP4 (ENSCSAG00000005550)	COX11 (ENSCSAG00000005536)	TOM1L1 (ENSCSAG00000005531)	KIF2B (ENSCSAG00000000545)	ENSCSAG00000000544	ENSCSAG00000005527	CDC42SE1 (ENSCSAG00000000543)	CA10 (ENSCSAG00000005524)	UTP18 (ENSCSAG00000005521)	MBTD1 (ENSCSAG00000005517)	NME2 (ENSCSAG00000005514)	NME1 (ENSCSAG00000005510)	SPAG9 (ENSCSAG00000005508) ##22	TOB1 (ENSCSAG00000000542)	WFIKKN2 (ENSCSAG00000005505)	ANKRD40CL (ENSCSAG00000005488)	LUC7L3 (ENSCSAG00000005485)	ANKRD40 (ENSCSAG00000005484)	ABCC3 (ENSCSAG00000005481)	CACNA1G (ENSCSAG00000005469)	SPATA20 (ENSCSAG00000005452)	EPN3 (ENSCSAG00000005448)	MYCBPAP (ENSCSAG00000005444)	RSAD1 (ENSCSAG00000005429)	ACSF2 (ENSCSAG00000005420)	CHAD (ENSCSAG00000005414)	LRRC59 (ENSCSAG00000005412)	EME1 (ENSCSAG00000005404) ##25
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT01040000240929	ENSGT00940000160240	ENSGT00390000010170.a.b.c.b	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00390000010170.a.b.c.b	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00390000010170.a.b.c.b	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Sooty mangabey	MODERN SPECIES	617	PCTP (ENSCATG00000035527)	TMEM100 (ENSCATG00000009385)	SMIM36 (ENSCATG00000007986)	MMD (ENSCATG00000039146)	HLF (ENSCATG00000040926)	STXBP4 (ENSCATG00000009577)	COX11 (ENSCATG00000040653)	TOM1L1 (ENSCATG00000043005)	ENSCATG00000036002	ENSCATG00000039281	CA10 (ENSCATG00000039920)	UTP18 (ENSCATG00000007697)	MBTD1 (ENSCATG00000012557)	NME2 (ENSCATG00000041058)	ENSCATG00000033652	SPAG9 (ENSCATG00000029267) ##22	TOB1 (ENSCATG00000022467)	WFIKKN2 (ENSCATG00000036084)	ANKRD40CL (ENSCATG00000035360)
Drill	MODERN SPECIES	1297												CA10 (ENSMLEG00000038750)	UTP18 (ENSMLEG00000041162)	MBTD1 (ENSMLEG00000040217)	ENSMLEG00000017846	SPAG9 (ENSMLEG00000034843) ##22	TOB1 (ENSMLEG00000021632)	WFIKKN2 (ENSMLEG00000031130)	LUC7L3 (ENSMLEG00000034172)	ANKRD40 (ENSMLEG00000012072)	ABCC3 (ENSMLEG00000030466)	CACNA1G (ENSMLEG00000032994)	SPATA20 (ENSMLEG00000041900)	EPN3 (ENSMLEG00000042354)	MYCBPAP (ENSMLEG00000026302)	ENSMLEG00000031115	RSAD1 (ENSMLEG00000037409)	ACSF2 (ENSMLEG00000001658)	CHAD (ENSMLEG00000034621)	LRRC59 (ENSMLEG00000041723)	EME1 (ENSMLEG00000010071) ##25
Olive baboon	MODERN SPECIES	8	TMEM100 (ENSPANG00000022363)	SMIM36 (ENSPANG00000030203)	MMD (ENSPANG00000022362)	HLF (ENSPANG00000022360)	STXBP4 (ENSPANG00000022358)	COX11 (ENSPANG00000022373)	TOM1L1 (ENSPANG00000022382)	KIF2B (ENSPANG00000040957)	ENSPANG00000051137	ENSPANG00000043896	CA10 (ENSPANG00000022378)	UTP18 (ENSPANG00000022441)	MBTD1 (ENSPANG00000022443)	NME2 (ENSPANG00000038462)	ENSPANG00000022445	SPAG9 (ENSPANG00000022449) ##22	TOB1 (ENSPANG00000022448)	WFIKKN2 (ENSPANG00000032724)	ANKRD40CL (ENSPANG00000045938)	LUC7L3 (ENSPANG00000022461)	ANKRD40 (ENSPANG00000022460)	ABCC3 (ENSPANG00000022459)	CACNA1G (ENSPANG00000022468)	SPATA20 (ENSPANG00000022479)	EPN3 (ENSPANG00000022477)	MYCBPAP (ENSPANG00000022476)	ENSPANG00000050914	RSAD1 (ENSPANG00000022474)	ACSF2 (ENSPANG00000022496)	CHAD (ENSPANG00000048455)	LRRC59 (ENSPANG00000022494)
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT01040000240929	ENSGT00940000160240	ENSGT00390000010170.a.b.c.b	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000163317	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Macaca_a	ANCESTRAL SPECIES	4	ENSGT01100000263577.a.a.b.a.b.a.a.b.b.a.b	ENSGT01100000263493.a.b.a.a.a.b.a.b.b.a.a.a.a.b	ENSGT00940000157428	ENSGT00940000156555	ENSGT01100000263493.a.b.a.a.a.a.a.a.b.a.a.a	ENSGT00390000002226	ENSGT00390000007512	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000163317	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000010799.u.b.a.a.b.o.a	ENSGT00390000002732.n.t	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a
Rhesus	MODERN SPECIES	7	STXBP4 (ENSMMUG00000010546)	COX11 (ENSMMUG00000010548)	TOM1L1 (ENSMMUG00000010550)	ENSMMUG00000061057	ENSMMUG00000057025	KIF2B (ENSMMUG00000014427)	ENSMMUG00000060858	ENSMMUG00000063189	CA10 (ENSMMUG00000013737)	ENSMMUG00000059340	ENSMMUG00000064982	ENSMMUG00000051004	UTP18 (ENSMMUG00000007858)	MBTD1 (ENSMMUG00000001942)	NME1 (ENSMMUG00000001940)	SPAG9 (ENSMMUG00000022528) ##22	ENSMMUG00000054539	TOB1 (ENSMMUG00000022740)	WFIKKN2 (ENSMMUG00000022741)	ANKRD40CL (ENSMMUG00000057364)	LUC7L3 (ENSMMUG00000010117)	ENSMMUG00000064138	ANKRD40 (ENSMMUG00000003421)	ABCC3 (ENSMMUG00000003414)	CACNA1G (ENSMMUG00000017256)	SPATA20 (ENSMMUG00000017252)	EPN3 (ENSMMUG00000017249)	MYCBPAP (ENSMMUG00000017242)	RSAD1 (ENSMMUG00000017240)	ACSF2 (ENSMMUG00000017236)	CHAD (ENSMMUG00000053287)
Crab-eating macaque	MODERN SPECIES	7	HLF (ENSMFAG00000032996)	ENSMFAG00000049221	STXBP4 (ENSMFAG00000001400)	COX11 (ENSMFAG00000003883)	TOM1L1 (ENSMFAG00000044267)	ENSMFAG00000065816	ENSMFAG00000055191	ENSMFAG00000019657	ENSMFAG00000065631	ENSMFAG00000057511	CA10 (ENSMFAG00000021148)	UTP18 (ENSMFAG00000034325)	MBTD1 (ENSMFAG00000042808)	NME2 (ENSMFAG00000007607)	NME1 (ENSMFAG00000058207)	SPAG9 (ENSMFAG00000035882) ##22	ENSMFAG00000052208	ENSMFAG00000055535	TOB1 (ENSMFAG00000025713)	WFIKKN2 (ENSMFAG00000041670)	ANKRD40CL (ENSMFAG00000049218)	LUC7L3 (ENSMFAG00000031780)	ANKRD40 (ENSMFAG00000003914)	ABCC3 (ENSMFAG00000040341)	ENSMFAG00000065101	ENSMFAG00000055574	EPN3 (ENSMFAG00000044525)	MYCBPAP (ENSMFAG00000045294)	ENSMFAG00000024046	RSAD1 (ENSMFAG00000035805)	ACSF2 (ENSMFAG00000042230)
Pig-tailed macaque	MODERN SPECIES	494												CA10 (ENSMNEG00000038854)	UTP18 (ENSMNEG00000032235)	MBTD1 (ENSMNEG00000037727)	ENSMNEG00000040888	SPAG9 (ENSMNEG00000035827) ##22	TOB1 (ENSMNEG00000017321)	WFIKKN2 (ENSMNEG00000039251)	LUC7L3 (ENSMNEG00000005520)	ANKRD40 (ENSMNEG00000029546)	ABCC3 (ENSMNEG00000032187)	CACNA1G (ENSMNEG00000039189)	SPATA20 (ENSMNEG00000037398)	EPN3 (ENSMNEG00000033160)	MYCBPAP (ENSMNEG00000032690)	ENSMNEG00000030665	RSAD1 (ENSMNEG00000031537)	CHAD (ENSMNEG00000042174)	ACSF2 (ENSMNEG00000042990)	LRRC59 (ENSMNEG00000024016)	EME1 (ENSMNEG00000036149) ##25
Rhinopithecus	ANCESTRAL SPECIES	19													ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000163317.a	ENSGT00940000153496.a.b ##22	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00940000164975	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Golden snub-nosed monkey	MODERN SPECIES	2563													UTP18 (ENSRROG00000040668)	MBTD1 (ENSRROG00000039412)	ENSRROG00000010557	SPAG9 (ENSRROG00000037678) ##22	WFIKKN2 (ENSRROG00000038868)	LUC7L3 (ENSRROG00000039925)	ANKRD40 (ENSRROG00000029337)	ABCC3 (ENSRROG00000040108)	CACNA1G (ENSRROG00000043013)	SPATA20 (ENSRROG00000042258)	EPN3 (ENSRROG00000042841)	MYCBPAP (ENSRROG00000034291)	ENSRROG00000041002	RSAD1 (ENSRROG00000028670)	CHAD (ENSRROG00000038428)	ACSF2 (ENSRROG00000037852)	LRRC59 (ENSRROG00000031009)	EME1 (ENSRROG00000045622) ##25	MRPL27 (ENSRROG00000030847)
Black snub-nosed monkey	MODERN SPECIES	1661														MBTD1 (ENSRBIG00000031922)	ENSRBIG00000044790	SPAG9 (ENSRBIG00000044908) ##22	WFIKKN2 (ENSRBIG00000038637)	LUC7L3 (ENSRBIG00000032055)	ANKRD40 (ENSRBIG00000030459)	ABCC3 (ENSRBIG00000036905)	CACNA1G (ENSRBIG00000044812)	SPATA20 (ENSRBIG00000041592)	EPN3 (ENSRBIG00000038001)	MYCBPAP (ENSRBIG00000029890)	ENSRBIG00000042395	RSAD1 (ENSRBIG00000044435)	ACSF2 (ENSRBIG00000039108)	CHAD (ENSRBIG00000044280)	LRRC59 (ENSRBIG00000033634)	EME1 (ENSRBIG00000033427) ##25	MRPL27 (ENSRBIG00000033398)
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.w	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569.o	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.w	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569.o	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.w	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569.o	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.w	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000161569.o	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Pan	ANCESTRAL SPECIES	3	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.w	ENSGT01040000240929	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919.a	ENSGT00940000153840.a.a	ENSGT00940000163317	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Bonobo	MODERN SPECIES	8	ANKFN1 (ENSPPAG00000031705)	PCTP (ENSPPAG00000038977)	SMIM36 (ENSPPAG00000014151)	MMD (ENSPPAG00000041226)	HLF (ENSPPAG00000027309)	STXBP4 (ENSPPAG00000018824)	COX11 (ENSPPAG00000040863)	ENSPPAG00000037041	TOM1L1 (ENSPPAG00000034653)	KIF2B (ENSPPAG00000004801)	ENSPPAG00000028350	CA10 (ENSPPAG00000029545)	UTP18 (ENSPPAG00000033852)	MBTD1 (ENSPPAG00000027635)	ENSPPAG00000034626	SPAG9 (ENSPPAG00000035613) ##22	TOB1 (ENSPPAG00000012145)	WFIKKN2 (ENSPPAG00000028923)	LUC7L3 (ENSPPAG00000025115)	ANKRD40 (ENSPPAG00000034159)	ABCC3 (ENSPPAG00000037760)	CACNA1G (ENSPPAG00000027970)	SPATA20 (ENSPPAG00000031622)	EPN3 (ENSPPAG00000041326)	MYCBPAP (ENSPPAG00000020130)	RSAD1 (ENSPPAG00000038908)	CHAD (ENSPPAG00000042480)	ACSF2 (ENSPPAG00000041679)	LRRC59 (ENSPPAG00000038146)	EME1 (ENSPPAG00000043143) ##25	MRPL27 (ENSPPAG00000037578)
Chimpanzee	MODERN SPECIES	8	ANKFN1 (ENSPTRG00000009428)	PCTP (ENSPTRG00000009427)	TMEM100 (ENSPTRG00000046736)	SMIM36 (ENSPTRG00000044544)	MMD (ENSPTRG00000009425)	HLF (ENSPTRG00000009424)	STXBP4 (ENSPTRG00000009423)	COX11 (ENSPTRG00000009422)	ENSPTRG00000047490	TOM1L1 (ENSPTRG00000009421)	KIF2B (ENSPTRG00000009420)	CA10 (ENSPTRG00000009419)	ENSPTRG00000046547	MBTD1 (ENSPTRG00000009417)	NME1 (ENSPTRG00000039502)	SPAG9 (ENSPTRG00000009414) ##22	TOB1 (ENSPTRG00000009413)	WFIKKN2 (ENSPTRG00000045369)	LUC7L3 (ENSPTRG00000009409)	ANKRD40 (ENSPTRG00000009407)	ABCC3 (ENSPTRG00000009406)	CACNA1G (ENSPTRG00000009405)	SPATA20 (ENSPTRG00000009404)	EPN3 (ENSPTRG00000050099)	MYCBPAP (ENSPTRG00000009402)	RSAD1 (ENSPTRG00000009401)	CHAD (ENSPTRG00000009400)	ACSF2 (ENSPTRG00000009399)	LRRC59 (ENSPTRG00000009398)	EME1 (ENSPTRG00000009397) ##25	MRPL27 (ENSPTRG00000009396)
Human	MODERN SPECIES	8	PCTP (ENSG00000141179)	TMEM100 (ENSG00000166292)	SMIM36 (ENSG00000261873)	MMD (ENSG00000108960)	HLF (ENSG00000108924)	STXBP4 (ENSG00000166263)	COX11 (ENSG00000166260)	TOM1L1 (ENSG00000141198)	KIF2B (ENSG00000141200)	CA10 (ENSG00000154975)	UTP18 (ENSG00000011260)	MBTD1 (ENSG00000011258)	NME2 (ENSG00000243678)	NME1-NME2 (ENSG00000011052)	NME1 (ENSG00000239672)	SPAG9 (ENSG00000008294) ##22	TOB1 (ENSG00000141232)	WFIKKN2 (ENSG00000173714)	ANKRD40CL (ENSG00000167117)	LUC7L3 (ENSG00000108848)	ANKRD40 (ENSG00000154945)	ABCC3 (ENSG00000108846)	CACNA1G (ENSG00000006283)	SPATA20 (ENSG00000006282)	EPN3 (ENSG00000049283)	MYCBPAP (ENSG00000136449)	RSAD1 (ENSG00000136444)	CHAD (ENSG00000136457)	ACSF2 (ENSG00000167107)	LRRC59 (ENSG00000108829)	EME1 (ENSG00000154920) ##25
Gorilla	MODERN SPECIES	18	PCTP (ENSGGOG00000022146)	ENSGGOG00000036422	ENSGGOG00000042407	MMD (ENSGGOG00000012014)	HLF (ENSGGOG00000006075)	STXBP4 (ENSGGOG00000012026)	COX11 (ENSGGOG00000011627)	TOM1L1 (ENSGGOG00000017131)	ENSGGOG00000042591	ENSGGOG00000036299	KIF2B (ENSGGOG00000006928)	CA10 (ENSGGOG00000015456)	UTP18 (ENSGGOG00000017061)	MBTD1 (ENSGGOG00000003708)	NME1 (ENSGGOG00000016526)	SPAG9 (ENSGGOG00000015297) ##22	TOB1 (ENSGGOG00000008005)	WFIKKN2 (ENSGGOG00000022330)	LUC7L3 (ENSGGOG00000024399)	ANKRD40 (ENSGGOG00000027851)	ABCC3 (ENSGGOG00000003404)	CACNA1G (ENSGGOG00000003386)	SPATA20 (ENSGGOG00000003379)	EPN3 (ENSGGOG00000003374)	MYCBPAP (ENSGGOG00000003367)	RSAD1 (ENSGGOG00000006524)	ACSF2 (ENSGGOG00000006513)	CHAD (ENSGGOG00000006518)	LRRC59 (ENSGGOG00000006310)	EME1 (ENSGGOG00000011302) ##25	MRPL27 (ENSGGOG00000011954)
Orangutan	MODERN SPECIES	8	ANKFN1 (ENSPPYG00000008253)	PCTP (ENSPPYG00000008254)	TMEM100 (ENSPPYG00000008255)	SMIM36 (ENSPPYG00000031288)	MMD (ENSPPYG00000008256)	HLF (ENSPPYG00000008257)	STXBP4 (ENSPPYG00000008258)	ENSPPYG00000037446	TOM1L1 (ENSPPYG00000025942)	KIF2B (ENSPPYG00000008261)	CA10 (ENSPPYG00000008263)	UTP18 (ENSPPYG00000008266)	MBTD1 (ENSPPYG00000036590)	NME2 (ENSPPYG00000035680)	ENSPPYG00000008268	SPAG9 (ENSPPYG00000008269) ##22	TOB1 (ENSPPYG00000008271)	WFIKKN2 (ENSPPYG00000008272)	ENSPPYG00000032401	LUC7L3 (ENSPPYG00000008273)	ANKRD40 (ENSPPYG00000008275)	ABCC3 (ENSPPYG00000008276)	CACNA1G (ENSPPYG00000008277)	SPATA20 (ENSPPYG00000008278)	EPN3 (ENSPPYG00000008279)	MYCBPAP (ENSPPYG00000008280)	RSAD1 (ENSPPYG00000008281)	ACSF2 (ENSPPYG00000008282)	CHAD (ENSPPYG00000008283)	ENSPPYG00000034021	EME1 (ENSPPYG00000008285) ##25
Gibbon	MODERN SPECIES	4	NOG (ENSNLEG00000028483)	ANKFN1 (ENSNLEG00000008001)	ENSNLEG00000007999	SMIM36 (ENSNLEG00000032208)	MMD (ENSNLEG00000007997)	HLF (ENSNLEG00000007993)	STXBP4 (ENSNLEG00000007992)	ENSNLEG00000030204	ENSNLEG00000007990	TOM1L1 (ENSNLEG00000007966)	CA10 (ENSNLEG00000007945)	ENSNLEG00000032835	UTP18 (ENSNLEG00000007941)	ENSNLEG00000007934	ENSNLEG00000031150	SPAG9 (ENSNLEG00000007894) ##22	WFIKKN2 (ENSNLEG00000007890)	LUC7L3 (ENSNLEG00000007881)	ANKRD40 (ENSNLEG00000027193)	ENSNLEG00000007870	ENSNLEG00000027641	CACNA1G (ENSNLEG00000007757)	SPATA20 (ENSNLEG00000007743)	ENSNLEG00000007742	MYCBPAP (ENSNLEG00000007738)	ENSNLEG00000029848	ENSNLEG00000018247	ENSNLEG00000026991	LRRC59 (ENSNLEG00000027978)	EME1 (ENSNLEG00000009053) ##25	MRPL27 (ENSNLEG00000009044)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00390000006009.a.a.a	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919.b	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00390000011666.x.a	ENSGT00940000156830	ENSGT00390000017385
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00390000007685.b	ENSGT00940000155223.b	ENSGT00440000033919.b	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00390000011666.x.a	ENSGT00940000156830	ENSGT00390000017385
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00910000148790	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00390000007685.b	ENSGT00940000155223.b	ENSGT00440000033919.b	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00390000011666.x.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Capuchin	MODERN SPECIES	123											CA10 (ENSCCAG00000033937)	ENSCCAG00000020478	MBTD1 (ENSCCAG00000021832)	NME2 (ENSCCAG00000013847)	ENSCCAG00000034597	SPAG9 (ENSCCAG00000014172) ##22	WFIKKN2 (ENSCCAG00000027196)	LUC7L3 (ENSCCAG00000033579)	ANKRD40 (ENSCCAG00000026481)	ABCC3 (ENSCCAG00000030521)	CACNA1G (ENSCCAG00000033679)	SPATA20 (ENSCCAG00000035788)	EPN3 (ENSCCAG00000026446)	MYCBPAP (ENSCCAG00000037315)	RSAD1 (ENSCCAG00000029513)	CHAD (ENSCCAG00000038046)	ENSCCAG00000036017	ACSF2 (ENSCCAG00000023167)	LRRC59 (ENSCCAG00000030588)	EME1 (ENSCCAG00000029143) ##25	ENSCCAG00000027809
Bolivian squirrel monkey	MODERN SPECIES	86	NOG (ENSSBOG00000006250)	ENSSBOG00000023715	ANKFN1 (ENSSBOG00000028809)	PCTP (ENSSBOG00000033719)	TMEM100 (ENSSBOG00000018187)	ENSSBOG00000021163	HLF (ENSSBOG00000015535)	STXBP4 (ENSSBOG00000034723)	COX11 (ENSSBOG00000024452)	TOM1L1 (ENSSBOG00000009970)	ENSSBOG00000029628	CA10 (ENSSBOG00000026052)	ENSSBOG00000024404	MBTD1 (ENSSBOG00000008681)	ENSSBOG00000031272	SPAG9 (ENSSBOG00000017078) ##22	TOB1 (ENSSBOG00000025245)	WFIKKN2 (ENSSBOG00000032107)	LUC7L3 (ENSSBOG00000034373)	ANKRD40 (ENSSBOG00000029842)	ABCC3 (ENSSBOG00000034250)	CACNA1G (ENSSBOG00000035938)	SPATA20 (ENSSBOG00000021033)	EPN3 (ENSSBOG00000034210)	MYCBPAP (ENSSBOG00000023288)	RSAD1 (ENSSBOG00000021184)	CHAD (ENSSBOG00000027701)	ACSF2 (ENSSBOG00000031032)	LRRC59 (ENSSBOG00000014866)	EME1 (ENSSBOG00000026480) ##25	ENSSBOG00000016577
Marmoset	MODERN SPECIES	17	ENSCJAG00000071374	MMD (ENSCJAG00000048045)	HLF (ENSCJAG00000061174)	STXBP4 (ENSCJAG00000011311)	ENSCJAG00000061117	COX11 (ENSCJAG00000011341)	TOM1L1 (ENSCJAG00000011347)	ENSCJAG00000059826	ENSCJAG00000082221	ENSCJAG00000070847	CA10 (ENSCJAG00000011392)	ENSCJAG00000018349	MBTD1 (ENSCJAG00000018369)	NME2 (ENSCJAG00000067614)	NME1 (ENSCJAG00000018395)	SPAG9 (ENSCJAG00000018448) ##22	ENSCJAG00000032609	TOB1 (ENSCJAG00000018533)	WFIKKN2 (ENSCJAG00000035232)	ANKRD40CL (ENSCJAG00000067605)	LUC7L3 (ENSCJAG00000018558)	ANKRD40 (ENSCJAG00000018627)	ABCC3 (ENSCJAG00000018609)	CACNA1G (ENSCJAG00000018639)	SPATA20 (ENSCJAG00000018727)	EPN3 (ENSCJAG00000018535)	MYCBPAP (ENSCJAG00000018762)	RSAD1 (ENSCJAG00000018782)	CHAD (ENSCJAG00000018813)	ENSCJAG00000045929	EME1 (ENSCJAG00000018843) ##25
Mas night monkey	MODERN SPECIES	1105										ENSANAG00000027905	TOM1L1 (ENSANAG00000028626)	CA10 (ENSANAG00000027963)	ENSANAG00000030556	MBTD1 (ENSANAG00000024377)	ENSANAG00000020987	SPAG9 (ENSANAG00000025617) ##22	WFIKKN2 (ENSANAG00000022042)	LUC7L3 (ENSANAG00000030274)	ANKRD40 (ENSANAG00000037190)	ABCC3 (ENSANAG00000030499)	CACNA1G (ENSANAG00000035926)	SPATA20 (ENSANAG00000027831)	EPN3 (ENSANAG00000021539)	MYCBPAP (ENSANAG00000036578)	RSAD1 (ENSANAG00000020765)	CHAD (ENSANAG00000034092)	ENSANAG00000034008	ACSF2 (ENSANAG00000032214)	LRRC59 (ENSANAG00000021578)	EME1 (ENSANAG00000033286) ##25	MRPL27 (ENSANAG00000007800)
Tarsier	MODERN SPECIES	4917															ENSTSYG00000005973	SPAG9 (ENSTSYG00000003470) ##22	TOB1 (ENSTSYG00000006815)	WFIKKN2 (ENSTSYG00000035521)	LUC7L3 (ENSTSYG00000001101)	ANKRD40 (ENSTSYG00000030665)	ABCC3 (ENSTSYG00000011928)	CACNA1G (ENSTSYG00000014522)
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mouse lemur	MODERN SPECIES	7	PCTP (ENSMICG00000002870)	ENSMICG00000042462	MMD (ENSMICG00000034764)	HLF (ENSMICG00000046916)	ENSMICG00000033389	STXBP4 (ENSMICG00000005231)	ENSMICG00000005225	TOM1L1 (ENSMICG00000005217)	ENSMICG00000036993	ENSMICG00000030277	CA10 (ENSMICG00000043674)	UTP18 (ENSMICG00000009331)	MBTD1 (ENSMICG00000016291)	ENSMICG00000046144	NME1 (ENSMICG00000007444)	SPAG9 (ENSMICG00000013743) ##22	TOB1 (ENSMICG00000041835)	WFIKKN2 (ENSMICG00000037081)	ENSMICG00000009835	ANKRD40 (ENSMICG00000009832)	ABCC3 (ENSMICG00000009822)	CACNA1G (ENSMICG00000009782)	SPATA20 (ENSMICG00000009762)	EPN3 (ENSMICG00000009752)	MYCBPAP (ENSMICG00000009732)	RSAD1 (ENSMICG00000033136)	ACSF2 (ENSMICG00000009718)	CHAD (ENSMICG00000027984)	LRRC59 (ENSMICG00000030215)	EME1 (ENSMICG00000009705) ##25	MRPL27 (ENSMICG00000009698)
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000163317	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Coquerels sifaka	MODERN SPECIES	120													UTP18 (ENSPCOG00000018750)	MBTD1 (ENSPCOG00000020917)	ENSPCOG00000019950	SPAG9 (ENSPCOG00000023553) ##22	TOB1 (ENSPCOG00000012977)	WFIKKN2 (ENSPCOG00000026784)	LUC7L3 (ENSPCOG00000022270)	ANKRD40 (ENSPCOG00000023277)	ABCC3 (ENSPCOG00000022785)	CACNA1G (ENSPCOG00000020519)	SPATA20 (ENSPCOG00000024466)	EPN3 (ENSPCOG00000025887)	MYCBPAP (ENSPCOG00000028417)	RSAD1 (ENSPCOG00000019679)	CHAD (ENSPCOG00000023064)	ACSF2 (ENSPCOG00000021413)	LRRC59 (ENSPCOG00000019835)	EME1 (ENSPCOG00000021528) ##25	MRPL27 (ENSPCOG00000014496)
Greater bamboo lemur	MODERN SPECIES	425	ENSPSMG00000008281	PCTP (ENSPSMG00000008309)	TMEM100 (ENSPSMG00000008314)	SMIM36 (ENSPSMG00000008322)	MMD (ENSPSMG00000008347)	ENSPSMG00000008355	HLF (ENSPSMG00000008371)	STXBP4 (ENSPSMG00000008505)	COX11 (ENSPSMG00000008600)	TOM1L1 (ENSPSMG00000008680)	KIF2B (ENSPSMG00000008719)	CA10 (ENSPSMG00000008752)	UTP18 (ENSPSMG00000008793)	MBTD1 (ENSPSMG00000008829)	ENSPSMG00000008885	SPAG9 (ENSPSMG00000009194) ##22	TOB1 (ENSPSMG00000009445)	WFIKKN2 (ENSPSMG00000009450)	ANKRD40CL (ENSPSMG00000009457)	LUC7L3 (ENSPSMG00000009519)	ANKRD40 (ENSPSMG00000009534)	ABCC3 (ENSPSMG00000009634)	CACNA1G (ENSPSMG00000011879)	SPATA20 (ENSPSMG00000015699)	EPN3 (ENSPSMG00000015742)	MYCBPAP (ENSPSMG00000015811)	RSAD1 (ENSPSMG00000015835)	ACSF2 (ENSPSMG00000015937)	CHAD (ENSPSMG00000015959)
Bushbaby	MODERN SPECIES	277		MMD (ENSOGAG00000005902)	HLF (ENSOGAG00000007056)	STXBP4 (ENSOGAG00000007052)	COX11 (ENSOGAG00000033893)	TOM1L1 (ENSOGAG00000030978)	KIF2B (ENSOGAG00000013739)	CA10 (ENSOGAG00000004991)	ENSOGAG00000031470	ENSOGAG00000025750	ENSOGAG00000032011	ENSOGAG00000032670	UTP18 (ENSOGAG00000000006)	MBTD1 (ENSOGAG00000000409)	NME2 (ENSOGAG00000025331)	SPAG9 (ENSOGAG00000004059) ##22	ENSOGAG00000031428	ENSOGAG00000032842	WFIKKN2 (ENSOGAG00000008880)	LUC7L3 (ENSOGAG00000004535)	ANKRD40 (ENSOGAG00000004534)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000166077	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Tree shrew	MODERN SPECIES	5809														ENSTBEG00000013095	NME2 (ENSTBEG00000013053)	SPAG9 (ENSTBEG00000012669) ##22
Glires	ANCESTRAL SPECIES	3	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Pika	MODERN SPECIES	143														MBTD1 (ENSOPRG00000013652)	ENSOPRG00000013625	SPAG9 (ENSOPRG00000013577) ##22	TOB1 (ENSOPRG00000013571)	WFIKKN2 (ENSOPRG00000013566)	LUC7L3 (ENSOPRG00000013537)	ANKRD40 (ENSOPRG00000013514)	ABCC3 (ENSOPRG00000013477)	CACNA1G (ENSOPRG00000013419)	SPATA20 (ENSOPRG00000013392)	EPN3 (ENSOPRG00000013374)	MYCBPAP (ENSOPRG00000013326)	RSAD1 (ENSOPRG00000013309)	CHAD (ENSOPRG00000013295)	ACSF2 (ENSOPRG00000013276)	LRRC59 (ENSOPRG00000013264)	EME1 (ENSOPRG00000013249) ##25	MRPL27 (ENSOPRG00000013236)
Rabbit	MODERN SPECIES	10	TMEM100 (ENSOCUG00000026610)	SMIM36 (ENSOCUG00000032098)	MMD (ENSOCUG00000010549)	HLF (ENSOCUG00000010547)	STXBP4 (ENSOCUG00000008478)	COX11 (ENSOCUG00000008473)	ENSOCUG00000008462	ENSOCUG00000033244	KIF2B (ENSOCUG00000010703)	CA10 (ENSOCUG00000002345)	ENSOCUG00000003298	UTP18 (ENSOCUG00000001636)	MBTD1 (ENSOCUG00000021379)	ENSOCUG00000024946	NME1 (ENSOCUG00000022135)	SPAG9 (ENSOCUG00000000817) ##22	TOB1 (ENSOCUG00000002771)	WFIKKN2 (ENSOCUG00000000391)	LUC7L3 (ENSOCUG00000002765)	ANKRD40 (ENSOCUG00000024074)	ABCC3 (ENSOCUG00000002754)	CACNA1G (ENSOCUG00000002733)	SPATA20 (ENSOCUG00000002725)	EPN3 (ENSOCUG00000002719)	MYCBPAP (ENSOCUG00000002706)	ENSOCUG00000036140	RSAD1 (ENSOCUG00000002702)	ACSF2 (ENSOCUG00000002690)	LRRC59 (ENSOCUG00000004613)	EME1 (ENSOCUG00000004604) ##25	MRPL27 (ENSOCUG00000004601)
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Kangaroo rat	MODERN SPECIES	326	ENSDORG00000028536	Ankfn1 (ENSDORG00000007824)	Pctp (ENSDORG00000012691)	Tmem100 (ENSDORG00000028016)	Mmd (ENSDORG00000026049)	Hlf (ENSDORG00000026285)	Stxbp4 (ENSDORG00000015457)	Tom1l1 (ENSDORG00000001206)	ENSDORG00000029230	Car10 (ENSDORG00000011701)	ENSDORG00000029998	Utp18 (ENSDORG00000005965)	ENSDORG00000005964	Nme2 (ENSDORG00000005962)	Nme1 (ENSDORG00000029493)	Spag9 (ENSDORG00000005649) ##22	Tob1 (ENSDORG00000013844)	Wfikkn2 (ENSDORG00000027958)	Luc7l3 (ENSDORG00000001260)	Ankrd40 (ENSDORG00000026320)	Abcc3 (ENSDORG00000004963)	Cacna1g (ENSDORG00000009130)	Spata20 (ENSDORG00000009128)	Epn3 (ENSDORG00000009127)	Rsad1 (ENSDORG00000000145)	Acsf2 (ENSDORG00000000142)	Lrrc59 (ENSDORG00000030092)	Mrpl27 (ENSDORG00000001026)	Xylt2 (ENSDORG00000001024)	ENSDORG00000013502	Sgca (ENSDORG00000013499)
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Lesser Egyptian jerboa	MODERN SPECIES	56											ENSJJAG00000010710	Car10 (ENSJJAG00000011249)	Utp18 (ENSJJAG00000010814)	Mbtd1 (ENSJJAG00000009918)	ENSJJAG00000010521	Spag9 (ENSJJAG00000010376) ##22	Tob1 (ENSJJAG00000006413)	Wfikkn2 (ENSJJAG00000007705)	ENSJJAG00000011218	Ankrd40 (ENSJJAG00000005910)	Abcc3 (ENSJJAG00000011383)	Cacna1g (ENSJJAG00000010477)	Spata20 (ENSJJAG00000005689)	Epn3 (ENSJJAG00000010839)	Mycbpap (ENSJJAG00000010056)	Rsad1 (ENSJJAG00000010782)	Chad (ENSJJAG00000004104)	Acsf2 (ENSJJAG00000010167)	Lrrc59 (ENSJJAG00000009353)	Eme1 (ENSJJAG00000010730) ##25	Mrpl27 (ENSJJAG00000006271)
Muroidea	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Nog (ENSNGAG00000008406)	ENSNGAG00000022323	Ankfn1 (ENSNGAG00000020087)	Pctp (ENSNGAG00000017939)	Tmem100 (ENSNGAG00000017499)	Mmd (ENSNGAG00000014107)	Hlf (ENSNGAG00000024380)	Stxbp4 (ENSNGAG00000022606)	ENSNGAG00000022170	Tom1l1 (ENSNGAG00000022011)	ENSNGAG00000017840	Car10 (ENSNGAG00000022109)	Utp18 (ENSNGAG00000014193)	Mbtd1 (ENSNGAG00000023882)	ENSNGAG00000021569	Spag9 (ENSNGAG00000002339) ##22	Tob1 (ENSNGAG00000022218)	Wfikkn2 (ENSNGAG00000022027)	Luc7l3 (ENSNGAG00000007648)	Ankrd40 (ENSNGAG00000001113)	Abcc3 (ENSNGAG00000019992)	Cacna1g (ENSNGAG00000022404)	Spata20 (ENSNGAG00000004968)	Epn3 (ENSNGAG00000000845)	Mycbpap (ENSNGAG00000022343)	Rsad1 (ENSNGAG00000021237)	Chad (ENSNGAG00000020178)	Acsf2 (ENSNGAG00000017923)	Lrrc59 (ENSNGAG00000015675)	Eme1 (ENSNGAG00000014420) ##25	Mrpl27 (ENSNGAG00000011345)
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mus	ANCESTRAL SPECIES	2	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.q	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569.c	ENSGT00940000163317	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k.e	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.q	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569.c	ENSGT00940000163317	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k.e	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mouse	MODERN SPECIES	2	Pctp (ENSMUSG00000020553)	Tmem100 (ENSMUSG00000069763)	Smim36 (ENSMUSG00000110344)	Mmd (ENSMUSG00000003948)	Hlf (ENSMUSG00000003949)	Stxbp4 (ENSMUSG00000020546)	Cox11 (ENSMUSG00000020544)	Tom1l1 (ENSMUSG00000020541)	Kif2b (ENSMUSG00000046755)	Car10 (ENSMUSG00000056158)	Utp18 (ENSMUSG00000054079)	Mbtd1 (ENSMUSG00000059474)	Nme2 (ENSMUSG00000020857)	Gm20390 (ENSMUSG00000091228)	Nme1 (ENSMUSG00000037601)	Spag9 (ENSMUSG00000020859) ##22	Tob1 (ENSMUSG00000037573)	Wfikkn2 (ENSMUSG00000044177)	Ankrd40cl (ENSMUSG00000094091)	Luc7l3 (ENSMUSG00000020863)	Ankrd40 (ENSMUSG00000020864)	Abcc3 (ENSMUSG00000020865)	Cacna1g (ENSMUSG00000020866)	Spata20 (ENSMUSG00000020867)	Epn3 (ENSMUSG00000010080)	Mycbpap (ENSMUSG00000039110)	Rsad1 (ENSMUSG00000039096)	Acsf2 (ENSMUSG00000076435)	Chad (ENSMUSG00000039084)	Lrrc59 (ENSMUSG00000020869)	Eme1 (ENSMUSG00000039055) ##25
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512.q	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569.c	ENSGT00940000163317	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k.e	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017804	Pctp (MGP_SPRETEiJ_G0017805)	Tmem100 (MGP_SPRETEiJ_G0017806)	Mmd (MGP_SPRETEiJ_G0017807)	Hlf (MGP_SPRETEiJ_G0017808)	Stxbp4 (MGP_SPRETEiJ_G0017809)	Cox11 (MGP_SPRETEiJ_G0017810)	Tom1l1 (MGP_SPRETEiJ_G0017811)	Kif2b (MGP_SPRETEiJ_G0017812)	Car10 (MGP_SPRETEiJ_G0017813)	Utp18 (MGP_SPRETEiJ_G0017814)	MGP_SPRETEiJ_G0017815	Nme2 (MGP_SPRETEiJ_G0017816)	MGP_SPRETEiJ_G0017817	Nme1 (MGP_SPRETEiJ_G0017818)	Spag9 (MGP_SPRETEiJ_G0017819) ##22	Tob1 (MGP_SPRETEiJ_G0017820)	Wfikkn2 (MGP_SPRETEiJ_G0017821)	Ankrd40cl (MGP_SPRETEiJ_G0017822)	Luc7l3 (MGP_SPRETEiJ_G0017823)	Ankrd40 (MGP_SPRETEiJ_G0017824)	Abcc3 (MGP_SPRETEiJ_G0017825)	Cacna1g (MGP_SPRETEiJ_G0017826)	Spata20 (MGP_SPRETEiJ_G0017827)	Epn3 (MGP_SPRETEiJ_G0017828)	Mycbpap (MGP_SPRETEiJ_G0017829)	Rsad1 (MGP_SPRETEiJ_G0017830)	Acsf2 (MGP_SPRETEiJ_G0017831)	Chad (MGP_SPRETEiJ_G0017832)	Lrrc59 (MGP_SPRETEiJ_G0017833)	Eme1 (MGP_SPRETEiJ_G0017834) ##25
Steppe mouse	MODERN SPECIES	3074												Car10 (ENSMSIG00000006012)	Utp18 (ENSMSIG00000006126)	Mbtd1 (ENSMSIG00000006207)	ENSMSIG00000006602	Spag9 (ENSMSIG00000006671) ##22	Tob1 (ENSMSIG00000007131)	Wfikkn2 (ENSMSIG00000007145)	Ankrd40cl (ENSMSIG00000007162)	Luc7l3 (ENSMSIG00000007180)	Ankrd40 (ENSMSIG00000007263)	Abcc3 (ENSMSIG00000007369)	Cacna1g (ENSMSIG00000007636)	Spata20 (ENSMSIG00000014363)	Epn3 (ENSMSIG00000014391)	Mycbpap (ENSMSIG00000014428)	Rsad1 (ENSMSIG00000014491)	Acsf2 (ENSMSIG00000014533)	Chad (ENSMSIG00000014562)
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0016958	Pctp (MGP_CAROLIEiJ_G0016959)	Tmem100 (MGP_CAROLIEiJ_G0016960)	Mmd (MGP_CAROLIEiJ_G0016961)	Hlf (MGP_CAROLIEiJ_G0016962)	Stxbp4 (MGP_CAROLIEiJ_G0016963)	Cox11 (MGP_CAROLIEiJ_G0016964)	Tom1l1 (MGP_CAROLIEiJ_G0016965)	Kif2b (MGP_CAROLIEiJ_G0016966)	Car10 (MGP_CAROLIEiJ_G0016967)	Utp18 (MGP_CAROLIEiJ_G0016968)	Mbtd1 (MGP_CAROLIEiJ_G0016969)	Nme2 (MGP_CAROLIEiJ_G0016970)	MGP_CAROLIEiJ_G0016971	Nme1 (MGP_CAROLIEiJ_G0016972)	Spag9 (MGP_CAROLIEiJ_G0016973) ##22	Tob1 (MGP_CAROLIEiJ_G0016974)	Wfikkn2 (MGP_CAROLIEiJ_G0016975)	MGP_CAROLIEiJ_G0016976	Luc7l3 (MGP_CAROLIEiJ_G0016977)	Ankrd40 (MGP_CAROLIEiJ_G0016978)	Abcc3 (MGP_CAROLIEiJ_G0016979)	Cacna1g (MGP_CAROLIEiJ_G0016980)	Spata20 (MGP_CAROLIEiJ_G0016981)	Epn3 (MGP_CAROLIEiJ_G0016982)	Mycbpap (MGP_CAROLIEiJ_G0016983)	Rsad1 (MGP_CAROLIEiJ_G0016984)	Acsf2 (MGP_CAROLIEiJ_G0016985)	Chad (MGP_CAROLIEiJ_G0016986)	Lrrc59 (MGP_CAROLIEiJ_G0016987)	Eme1 (MGP_CAROLIEiJ_G0016988) ##25
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018089	Pctp (MGP_PahariEiJ_G0018090)	Tmem100 (MGP_PahariEiJ_G0018091)	Mmd (MGP_PahariEiJ_G0018092)	Hlf (MGP_PahariEiJ_G0018093)	Stxbp4 (MGP_PahariEiJ_G0018094)	Cox11 (MGP_PahariEiJ_G0018095)	Tom1l1 (MGP_PahariEiJ_G0018096)	Kif2b (MGP_PahariEiJ_G0018097)	Car10 (MGP_PahariEiJ_G0018098)	Utp18 (MGP_PahariEiJ_G0018099)	Mbtd1 (MGP_PahariEiJ_G0018100)	Nme2 (MGP_PahariEiJ_G0018101)	MGP_PahariEiJ_G0018102	MGP_PahariEiJ_G0018103	Spag9 (MGP_PahariEiJ_G0018104) ##22	Tob1 (MGP_PahariEiJ_G0018105)	Wfikkn2 (MGP_PahariEiJ_G0018106)	MGP_PahariEiJ_G0018107	Luc7l3 (MGP_PahariEiJ_G0018108)	Ankrd40 (MGP_PahariEiJ_G0018109)	Abcc3 (MGP_PahariEiJ_G0018110)	Cacna1g (MGP_PahariEiJ_G0018111)	Spata20 (MGP_PahariEiJ_G0018112)	Epn3 (MGP_PahariEiJ_G0018113)	Mycbpap (MGP_PahariEiJ_G0018114)	Rsad1 (MGP_PahariEiJ_G0018115)	Acsf2 (MGP_PahariEiJ_G0018116)	Chad (MGP_PahariEiJ_G0018117)	Lrrc59 (MGP_PahariEiJ_G0018118)	Eme1 (MGP_PahariEiJ_G0018119) ##25
Rat	MODERN SPECIES	1	Smim36 (ENSRNOG00000069860)	Mmd (ENSRNOG00000002436)	Hlf (ENSRNOG00000067479)	Stxbp4 (ENSRNOG00000032768)	Cox11 (ENSRNOG00000052096)	Tom1l1 (ENSRNOG00000002474)	AABR07013200.1 (ENSRNOG00000030491)	LOC100363469 (ENSRNOG00000031579)	Car10 (ENSRNOG00000002626)	LOC100911361 (ENSRNOG00000027006)	Tmsb10-ps6 (ENSRNOG00000036921)	Utp18 (ENSRNOG00000002644)	Mbtd1 (ENSRNOG00000049988)	Nme2 (ENSRNOG00000002671)	Nme1 (ENSRNOG00000002693)	Spag9 (ENSRNOG00000002749) ##22	Tob1 (ENSRNOG00000002828)	Wfikkn2 (ENSRNOG00000002831)	Ankrd40cl (ENSRNOG00000045669)	Luc7l3 (ENSRNOG00000002835)	Ankrd40 (ENSRNOG00000002935)	Abcc3 (ENSRNOG00000002948)	Cacna1g (ENSRNOG00000060528)	Spata20 (ENSRNOG00000003273)	Epn3 (ENSRNOG00000003284)	Mycbpap (ENSRNOG00000042912)	Rsad1 (ENSRNOG00000065974)	Acsf2 (ENSRNOG00000003330)	Chad (ENSRNOG00000003304)	Lrrc59 (ENSRNOG00000003524)	Eme1 (ENSRNOG00000024420) ##25
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Prairie vole	MODERN SPECIES	15	Ankfn1 (ENSMOCG00000002064)	Pctp (ENSMOCG00000021810)	Tmem100 (ENSMOCG00000021604)	Mmd (ENSMOCG00000011224)	Hlf (ENSMOCG00000002111)	Stxbp4 (ENSMOCG00000014715)	ENSMOCG00000006989	Tom1l1 (ENSMOCG00000004415)	Kif2b (ENSMOCG00000002849)	ENSMOCG00000017678	Car10 (ENSMOCG00000011451)	ENSMOCG00000002721	Utp18 (ENSMOCG00000010919)	Mbtd1 (ENSMOCG00000021328)	ENSMOCG00000013162	Spag9 (ENSMOCG00000020874) ##22	Tob1 (ENSMOCG00000011383)	Wfikkn2 (ENSMOCG00000003939)	Luc7l3 (ENSMOCG00000013538)	Ankrd40 (ENSMOCG00000004664)	ENSMOCG00000011138	ENSMOCG00000013091	Cacna1g (ENSMOCG00000006187)	Spata20 (ENSMOCG00000005071)	Epn3 (ENSMOCG00000015958)	Mycbpap (ENSMOCG00000019504)	Rsad1 (ENSMOCG00000021925)	Acsf2 (ENSMOCG00000009899)	Chad (ENSMOCG00000003529)	ENSMOCG00000019773	ENSMOCG00000018915
Northern American deer mouse	MODERN SPECIES	21	ENSPEMG00000000809	ENSPEMG00000027921	Mmd (ENSPEMG00000000328)	Hlf (ENSPEMG00000029046)	Stxbp4 (ENSPEMG00000001411)	Cox11 (ENSPEMG00000024142)	Tom1l1 (ENSPEMG00000022203)	Kif2b (ENSPEMG00000027696)	ENSPEMG00000005281	ENSPEMG00000028526	Car10 (ENSPEMG00000000626)	Utp18 (ENSPEMG00000023374)	Mbtd1 (ENSPEMG00000023505)	Nme2 (ENSPEMG00000025029)	Nme1 (ENSPEMG00000024386)	Spag9 (ENSPEMG00000021999) ##22	Tob1 (ENSPEMG00000004859)	Wfikkn2 (ENSPEMG00000022904)	Ankrd40cl (ENSPEMG00000027053)	Luc7l3 (ENSPEMG00000022694)	Ankrd40 (ENSPEMG00000027514)	Abcc3 (ENSPEMG00000021277)	Cacna1g (ENSPEMG00000021107)	Spata20 (ENSPEMG00000024043)	Epn3 (ENSPEMG00000021011)	Mycbpap (ENSPEMG00000021825)	Rsad1 (ENSPEMG00000021383)	Acsf2 (ENSPEMG00000020965)	Chad (ENSPEMG00000025139)	Lrrc59 (ENSPEMG00000029228)	Eme1 (ENSPEMG00000006307) ##25
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000163317	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Chinese hamster chok1gshd	MODERN SPECIES	33	Tmem100 (ENSCGRG00001011394)	ENSCGRG00001011423	ENSCGRG00001000174	Mmd (ENSCGRG00001021487)	Hlf (ENSCGRG00001013188)	Stxbp4 (ENSCGRG00001023598)	Cox11 (ENSCGRG00001011330)	Tom1l1 (ENSCGRG00001012617)	Kif2b (ENSCGRG00001011166)	Car10 (ENSCGRG00001017785)	Utp18 (ENSCGRG00001008786)	Mbtd1 (ENSCGRG00001008409)	Nme2 (ENSCGRG00001012585)	Nme1 (ENSCGRG00001022109)	ENSCGRG00001010907	Spag9 (ENSCGRG00001020494) ##22	Tob1 (ENSCGRG00001009633)	Wfikkn2 (ENSCGRG00001022356)	Luc7l3 (ENSCGRG00001009809)	ENSCGRG00001020484	Abcc3 (ENSCGRG00001010018)	Cacna1g (ENSCGRG00001002871)	Spata20 (ENSCGRG00001006141)	Epn3 (ENSCGRG00001009708)	Mycbpap (ENSCGRG00001004065)	Rsad1 (ENSCGRG00001020971)	Acsf2 (ENSCGRG00001006504)	Chad (ENSCGRG00001017300)	Lrrc59 (ENSCGRG00001003469)	Eme1 (ENSCGRG00001012113) ##25	Mrpl27 (ENSCGRG00001018944)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	151																ENSMAUG00000018134 ##22
Golden Hamster	MODERN SPECIES	674	Nog (ENSMAUG00000008457)	ENSMAUG00000011292	Ankfn1 (ENSMAUG00000019536)	Pctp (ENSMAUG00000008171)	Tmem100 (ENSMAUG00000019557)	Mmd (ENSMAUG00000009440)	Hlf (ENSMAUG00000011516)	Stxbp4 (ENSMAUG00000010115)	ENSMAUG00000008185	Tom1l1 (ENSMAUG00000014320)	Kif2b (ENSMAUG00000008566)	Car10 (ENSMAUG00000017037)	Utp18 (ENSMAUG00000022024)	Mbtd1 (ENSMAUG00000020463)	ENSMAUG00000002359	ENSMAUG00000019047 ##22	Tob1 (ENSMAUG00000008330)	Wfikkn2 (ENSMAUG00000014088)	Luc7l3 (ENSMAUG00000016610)	Ankrd40 (ENSMAUG00000010247)	ENSMAUG00000011672	ENSMAUG00000001026	ENSMAUG00000015351	Spata20 (ENSMAUG00000013601)	Epn3 (ENSMAUG00000009495)	Mycbpap (ENSMAUG00000016107)	Rsad1 (ENSMAUG00000008431)	Acsf2 (ENSMAUG00000020585)	Chad (ENSMAUG00000020237)	Lrrc59 (ENSMAUG00000020384)	Eme1 (ENSMAUG00000011175) ##25
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Guinea pig	MODERN SPECIES	53	ANKFN1 (ENSCPOG00000004925)	PCTP (ENSCPOG00000013507)	TMEM100 (ENSCPOG00000040096)	SMIM36 (ENSCPOG00000032031)	MMD (ENSCPOG00000039747)	HLF (ENSCPOG00000032087)	STXBP4 (ENSCPOG00000011602)	COX11 (ENSCPOG00000008482)	TOM1L1 (ENSCPOG00000023145)	KIF2B (ENSCPOG00000026487)	CA10 (ENSCPOG00000015491)	UTP18 (ENSCPOG00000001477)	MBTD1 (ENSCPOG00000002995)	NME2 (ENSCPOG00000008413)	NME1 (ENSCPOG00000033542)	SPAG9 (ENSCPOG00000008508) ##22	TOB1 (ENSCPOG00000037691)	WFIKKN2 (ENSCPOG00000034191)	LUC7L3 (ENSCPOG00000034356)	ANKRD40 (ENSCPOG00000033728)	ABCC3 (ENSCPOG00000013296)	CACNA1G (ENSCPOG00000025511)	SPATA20 (ENSCPOG00000024264)	EPN3 (ENSCPOG00000020362)	MYCBPAP (ENSCPOG00000013284)	RSAD1 (ENSCPOG00000034976)	ACSF2 (ENSCPOG00000013278)	CHAD (ENSCPOG00000032331)	LRRC59 (ENSCPOG00000036326)	EME1 (ENSCPOG00000025251) ##25	MRPL27 (ENSCPOG00000025999)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25	ENSGT00390000014660
Long-tailed chinchilla	MODERN SPECIES	158	NOG (ENSCLAG00000017798)	ENSCLAG00000013710	ANKFN1 (ENSCLAG00000015690)	PCTP (ENSCLAG00000012326)	TMEM100 (ENSCLAG00000014942)	SMIM36 (ENSCLAG00000018044)	MMD (ENSCLAG00000016458)	HLF (ENSCLAG00000013244)	STXBP4 (ENSCLAG00000011711)	COX11 (ENSCLAG00000013909)	TOM1L1 (ENSCLAG00000012206)	CA10 (ENSCLAG00000014796)	UTP18 (ENSCLAG00000012603)	MBTD1 (ENSCLAG00000011590)	NME2 (ENSCLAG00000013895)	SPAG9 (ENSCLAG00000015982) ##22	TOB1 (ENSCLAG00000016229)	WFIKKN2 (ENSCLAG00000015014)	LUC7L3 (ENSCLAG00000013901)	ANKRD40 (ENSCLAG00000012550)	ABCC3 (ENSCLAG00000011690)	CACNA1G (ENSCLAG00000013164)	SPATA20 (ENSCLAG00000014759)	EPN3 (ENSCLAG00000013115)	MYCBPAP (ENSCLAG00000013227)	RSAD1 (ENSCLAG00000011905)	ACSF2 (ENSCLAG00000014340)	CHAD (ENSCLAG00000011933)	LRRC59 (ENSCLAG00000012618)	EME1 (ENSCLAG00000014745) ##25	MRPL27 (ENSCLAG00000012478)
Degu	DUPLICATION
Degu	MODERN SPECIES	97	ENSODEG00000016235	ENSODEG00000016003	ENSODEG00000015753	ELAPOR2 (ENSODEG00000016608)	GRM3 (ENSODEG00000016466)	ENSODEG00000016069	TOM1L1 (ENSODEG00000016753)	ENSODEG00000016239	ENSODEG00000016314	CA10 (ENSODEG00000016234)	ENSODEG00000016197	UTP18 (ENSODEG00000016286)	MBTD1 (ENSODEG00000016087)	ENSODEG00000016426	ENSODEG00000016910	ENSODEG00000016681 ##22	TOB1 (ENSODEG00000020335)	WFIKKN2 (ENSODEG00000016641)	ENSODEG00000016974	ANKRD40 (ENSODEG00000016447)	ABCC3 (ENSODEG00000016316)	CACNA1G (ENSODEG00000017736)	SPATA20 (ENSODEG00000016520)	EPN3 (ENSODEG00000016963)	MYCBPAP (ENSODEG00000017339)	ENSODEG00000016573	ACSF2 (ENSODEG00000016960)	CHAD (ENSODEG00000016909)	LRRC59 (ENSODEG00000016947)	EME1 (ENSODEG00000016701) ##25	MRPL27 (ENSODEG00000016720)
Degu	MODERN SPECIES	50						RGS18 (ENSODEG00000013926)	RGS21 (ENSODEG00000009295)	RGS1 (ENSODEG00000009482)	RGS13 (ENSODEG00000009567)	RGS2 (ENSODEG00000010209)	ENSODEG00000011024	RO60 (ENSODEG00000010468)	GLRX2 (ENSODEG00000010878)	CDC73 (ENSODEG00000010481)	B3GALT2 (ENSODEG00000011536)	ENSODEG00000011003 ##22	ENSODEG00000019692	ENSODEG00000019716	ENSODEG00000010768	KCNT2 (ENSODEG00000009673)	ENSODEG00000010026	ENSODEG00000010990	ZBTB41 (ENSODEG00000013022)	ENSODEG00000011989	DENND1B (ENSODEG00000010445)	C1orf53 (ENSODEG00000010198)	LHX9 (ENSODEG00000010844)	NEK7 (ENSODEG00000011591)	ENSODEG00000012489	ENSODEG00000019948	ATP6V1G3 (ENSODEG00000011992)
Naked mole-rat female	MODERN SPECIES	12	HLF (ENSHGLG00000031895)	ENSHGLG00000039115	STXBP4 (ENSHGLG00000012455)	COX11 (ENSHGLG00000012128)	TOM1L1 (ENSHGLG00000016187)	ENSHGLG00000039703	ENSHGLG00000020791	ENSHGLG00000020500	CA10 (ENSHGLG00000012469)	ENSHGLG00000020129	ENSHGLG00000049611	UTP18 (ENSHGLG00000013645)	MBTD1 (ENSHGLG00000012910)	NME2 (ENSHGLG00000049278)	ENSHGLG00000046537	SPAG9 (ENSHGLG00000010556) ##22	ENSHGLG00000033861	TOB1 (ENSHGLG00000035274)	WFIKKN2 (ENSHGLG00000012317)	LUC7L3 (ENSHGLG00000010417)	ANKRD40 (ENSHGLG00000041927)	ABCC3 (ENSHGLG00000011309)	ENSHGLG00000045504	CACNA1G (ENSHGLG00000019354)	SPATA20 (ENSHGLG00000019135)	ENSHGLG00000018546	MYCBPAP (ENSHGLG00000013477)	RSAD1 (ENSHGLG00000013055)	ACSF2 (ENSHGLG00000011512)	CHAD (ENSHGLG00000012429)	LRRC59 (ENSHGLG00000048759)
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00910000148790	ENSGT01090000261778	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Eurasian red squirrel	MODERN SPECIES	12	SMIM36 (ENSSVLG00005008407)	MMD (ENSSVLG00005008382)	ENSSVLG00005008375	HLF (ENSSVLG00005008325)	STXBP4 (ENSSVLG00005008281)	COX11 (ENSSVLG00005008220)	TOM1L1 (ENSSVLG00005008148)	ENSSVLG00005008126	KIF2B (ENSSVLG00005008107)	CA10 (ENSSVLG00005008014)	ENSSVLG00005007983	UTP18 (ENSSVLG00005007967)	MBTD1 (ENSSVLG00005007896)	NME2 (ENSSVLG00005007836)	NME1 (ENSSVLG00005007782)	SPAG9 (ENSSVLG00005007544) ##22	TOB1 (ENSSVLG00005007463)	WFIKKN2 (ENSSVLG00005007430)	ANKRD40CL (ENSSVLG00005007394)	LUC7L3 (ENSSVLG00005007353)	ANKRD40 (ENSSVLG00005007335)	ABCC3 (ENSSVLG00005007311)	CACNA1G (ENSSVLG00005002928)	SPATA20 (ENSSVLG00005001260)	EPN3 (ENSSVLG00005001192)	MYCBPAP (ENSSVLG00005001150)	RSAD1 (ENSSVLG00005001112)	CHAD (ENSSVLG00005001097)	ACSF2 (ENSSVLG00005001048)	ENSSVLG00005000994	EME1 (ENSSVLG00005000966) ##25
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Arctic ground squirrel	MODERN SPECIES	46											CA10 (ENSUPAG00010023439)	UTP18 (ENSUPAG00010023440)	MBTD1 (ENSUPAG00010000047)	ENSUPAG00010000361	NME1 (ENSUPAG00010000388)	SPAG9 (ENSUPAG00010000406) ##22	TOB1 (ENSUPAG00010001550)	WFIKKN2 (ENSUPAG00010001564)	ANKRD40CL (ENSUPAG00010001580)	LUC7L3 (ENSUPAG00010001604)	ANKRD40 (ENSUPAG00010001754)	ABCC3 (ENSUPAG00010001779)	CACNA1G (ENSUPAG00010001920)	SPATA20 (ENSUPAG00010005223)	EPN3 (ENSUPAG00010005252)	MYCBPAP (ENSUPAG00010005269)	RSAD1 (ENSUPAG00010005559)	ACSF2 (ENSUPAG00010005567)	CHAD (ENSUPAG00010005568)	LRRC59 (ENSUPAG00010005570)	EME1 (ENSUPAG00010005578) ##25
Squirrel	MODERN SPECIES	90	ENSSTOG00000019503	ANKFN1 (ENSSTOG00000010280)	PCTP (ENSSTOG00000008053)	TMEM100 (ENSSTOG00000012336)	SMIM36 (ENSSTOG00000032016)	MMD (ENSSTOG00000016227)	HLF (ENSSTOG00000029018)	STXBP4 (ENSSTOG00000012175)	ENSSTOG00000012160	KIF2B (ENSSTOG00000011516)	CA10 (ENSSTOG00000016378)	UTP18 (ENSSTOG00000004212)	MBTD1 (ENSSTOG00000001234)	NME2 (ENSSTOG00000001230)	NME1 (ENSSTOG00000032316)	SPAG9 (ENSSTOG00000005080) ##22	TOB1 (ENSSTOG00000006911)	WFIKKN2 (ENSSTOG00000021096)	LUC7L3 (ENSSTOG00000004234)	ANKRD40 (ENSSTOG00000004215)	ABCC3 (ENSSTOG00000027974)	CACNA1G (ENSSTOG00000019651)	SPATA20 (ENSSTOG00000004098)	EPN3 (ENSSTOG00000023552)	MYCBPAP (ENSSTOG00000011746)	RSAD1 (ENSSTOG00000011733)	ACSF2 (ENSSTOG00000011724)	CHAD (ENSSTOG00000011729)	LRRC59 (ENSSTOG00000008913)	EME1 (ENSSTOG00000008904) ##25	MRPL27 (ENSSTOG00000008896)
Alpin marmot	MODERN SPECIES	42	SMIM36 (ENSMMMG00000020885)	MMD (ENSMMMG00000020888)	ENSMMMG00000020910	ENSMMMG00000020913	HLF (ENSMMMG00000020915)	STXBP4 (ENSMMMG00000020922)	COX11 (ENSMMMG00000020936)	TOM1L1 (ENSMMMG00000020950)	KIF2B (ENSMMMG00000021059)	CA10 (ENSMMMG00000021089)	ENSMMMG00000021160	UTP18 (ENSMMMG00000021174)	MBTD1 (ENSMMMG00000021186)	NME2 (ENSMMMG00000021220)	NME1 (ENSMMMG00000021223)	SPAG9 (ENSMMMG00000021229) ##22	TOB1 (ENSMMMG00000021398)	WFIKKN2 (ENSMMMG00000021399)	ANKRD40CL (ENSMMMG00000021403)	LUC7L3 (ENSMMMG00000021408)	ANKRD40 (ENSMMMG00000021411)	ABCC3 (ENSMMMG00000021416)	ENSMMMG00000021449	CACNA1G (ENSMMMG00000021463)	SPATA20 (ENSMMMG00000022312)	EPN3 (ENSMMMG00000022352)	MYCBPAP (ENSMMMG00000022372)	RSAD1 (ENSMMMG00000022425)	ACSF2 (ENSMMMG00000022430)	CHAD (ENSMMMG00000022440)	LRRC59 (ENSMMMG00000022449)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000165833	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Elephant	MODERN SPECIES	310	PCTP (ENSLAFG00000011993)	TMEM100 (ENSLAFG00000011800)	MMD (ENSLAFG00000012012)	HLF (ENSLAFG00000016475)	STXBP4 (ENSLAFG00000000761)	COX11 (ENSLAFG00000011891)	TOM1L1 (ENSLAFG00000011887)	ENSLAFG00000032494	KIF2B (ENSLAFG00000012598)	ENSLAFG00000026550	CA10 (ENSLAFG00000015886)	UTP18 (ENSLAFG00000000622)	MBTD1 (ENSLAFG00000007787)	NME2 (ENSLAFG00000007784)	NME1 (ENSLAFG00000025643)	SPAG9 (ENSLAFG00000007773) ##22	TOB1 (ENSLAFG00000008077)	WFIKKN2 (ENSLAFG00000008080)	ANKRD40CL (ENSLAFG00000030205)	LUC7L3 (ENSLAFG00000007054)	ENSLAFG00000030720	ANKRD40 (ENSLAFG00000007050)	ABCC3 (ENSLAFG00000007037)	CACNA1G (ENSLAFG00000007026)	SPATA20 (ENSLAFG00000022872)	EPN3 (ENSLAFG00000007024)	MYCBPAP (ENSLAFG00000030223)	RSAD1 (ENSLAFG00000007022)	ACSF2 (ENSLAFG00000007011)	CHAD (ENSLAFG00000009516)	LRRC59 (ENSLAFG00000000458)
Hyrax	MODERN SPECIES	7688																SPAG9 (ENSPCAG00000007735) ##22
Tenrec	MODERN SPECIES	68																SPAG9 (ENSETEG00000012882) ##22
Xenarthra	ANCESTRAL SPECIES	214											ENSGT00940000163180	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000165833	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565
Sloth	MODERN SPECIES	57																SPAG9 (ENSCHOG00000010421) ##22
Armadillo	MODERN SPECIES	4152									KIF2B (ENSDNOG00000043934)	ENSDNOG00000040508	CA10 (ENSDNOG00000033523)	ENSDNOG00000037802	UTP18 (ENSDNOG00000014131)	MBTD1 (ENSDNOG00000044478)	ENSDNOG00000032324	SPAG9 (ENSDNOG00000005493) ##22	TOB1 (ENSDNOG00000048486)	WFIKKN2 (ENSDNOG00000036748)	ENSDNOG00000035561	ANKRD40 (ENSDNOG00000037399)	ABCC3 (ENSDNOG00000046300)	CACNA1G (ENSDNOG00000047894)	SPATA20 (ENSDNOG00000032944)	EPN3 (ENSDNOG00000035313)	MYCBPAP (ENSDNOG00000016313)
Platypus	MODERN SPECIES	6	ANKFN1 (ENSOANG00000010292)	ENSOANG00000038360	ENSOANG00000043440	ENSOANG00000042093	MMD (ENSOANG00000010289)	HLF (ENSOANG00000038682)	STXBP4 (ENSOANG00000008608)	ENSOANG00000043487	ENSOANG00000007277	ENSOANG00000049905	CA10 (ENSOANG00000002282)	ENSOANG00000003189	MBTD1 (ENSOANG00000003190)	NME2 (ENSOANG00000011751)	NME1 (ENSOANG00000011750)	SPAG9 (ENSOANG00000010297) ##22	WFIKKN2 (ENSOANG00000037242)	TOB1 (ENSOANG00000011577)	PXMP4 (ENSOANG00000048465)	ENSOANG00000037316	ENSOANG00000039248	ENSOANG00000013657	ENSOANG00000013656	XYLT2 (ENSOANG00000049975)	MRPL27 (ENSOANG00000048564)	ENSOANG00000043509 ##25	LRRC59 (ENSOANG00000041912)	CHAD (ENSOANG00000038576)	ACSF2 (ENSOANG00000020863)	RSAD1 (ENSOANG00000044770)	ENSOANG00000005904
Sauria	ANCESTRAL SPECIES	30	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00940000161826.C
Archelosauria	ANCESTRAL SPECIES	19	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Archosauria	ANCESTRAL SPECIES	12	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00940000154464.a	ENSGT00390000017385
Aves	ANCESTRAL SPECIES	17	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Neognathae	ANCESTRAL SPECIES	17	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Neognathae_b	ANCESTRAL SPECIES	19	ENSGT00390000006009.a.a.a	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Neognathae_c	ANCESTRAL SPECIES	23	ENSGT00390000006009.a.a.a	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Golden eagle	MODERN SPECIES	21	C17orf67 (ENSACCG00020005633)	NOG (ENSACCG00020005619)	ENSACCG00020005607	PCTP (ENSACCG00020005592)	TMEM100 (ENSACCG00020005583)	MMD (ENSACCG00020005564)	HLF (ENSACCG00020005547)	STXBP4 (ENSACCG00020005510)	COX11 (ENSACCG00020005477)	TOM1L1 (ENSACCG00020005465)	CA10 (ENSACCG00020005443)	UTP18 (ENSACCG00020005420)	MBTD1 (ENSACCG00020005392)	NME2 (ENSACCG00020005377)	NME1 (ENSACCG00020005360)	SPAG9 (ENSACCG00020005302) ##22	TOB1 (ENSACCG00020005261)	WFIKKN2 (ENSACCG00020005255)	ENSACCG00020005248	LUC7L3 (ENSACCG00020005230)	ANKRD40 (ENSACCG00020005210)	ENSACCG00020005186	CACNA1G (ENSACCG00020004362)	SPATA20 (ENSACCG00020002817)	EPN3 (ENSACCG00020002784)	MYCBPAP (ENSACCG00020002752)	ENSACCG00020002724	ENSACCG00020002707	ACSF2 (ENSACCG00020002687)	LRRC59 (ENSACCG00020002656)	MRPL27 (ENSACCG00020002641)
Kakapo	MODERN SPECIES	8	PCTP (ENSSHBG00005020937)	TMEM100 (ENSSHBG00005020932)	ENSSHBG00005020929	SMIM36 (ENSSHBG00005020926)	MMD (ENSSHBG00005020920)	HLF (ENSSHBG00005020918)	STXBP4 (ENSSHBG00005020911)	COX11 (ENSSHBG00005020906)	ENSSHBG00005020899	ENSSHBG00005020892	CA10 (ENSSHBG00005020885)	UTP18 (ENSSHBG00005020881)	MBTD1 (ENSSHBG00005020871)	NME2 (ENSSHBG00005020860)	NME1 (ENSSHBG00005020856)	SPAG9 (ENSSHBG00005020837) ##22	TOB1 (ENSSHBG00005020815)	WFIKKN2 (ENSSHBG00005020812)	ENSSHBG00005020802	LUC7L3 (ENSSHBG00005020788)	ANKRD40 (ENSSHBG00005020774)	ENSSHBG00005017306	ENSSHBG00005016717	CACNA1G (ENSSHBG00005012072)	SPATA20 (ENSSHBG00005010955)	EPN3 (ENSSHBG00005010837)	MYCBPAP (ENSSHBG00005010779)	RSAD1 (ENSSHBG00005001038)	ENSSHBG00005001036	ACSF2 (ENSSHBG00005015276)	LRRC59 (ENSSHBG00005015225)
Passeriformes	ANCESTRAL SPECIES	17	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Passeriformes_d	ANCESTRAL SPECIES	17	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Flycatcher	MODERN SPECIES	8	DGKE (ENSFALG00000002273)	C17orf67 (ENSFALG00000002272)	ANKFN1 (ENSFALG00000002269)	PCTP (ENSFALG00000002268)	MMD (ENSFALG00000025656)	HLF (ENSFALG00000002265)	STXBP4 (ENSFALG00000027545)	COX11 (ENSFALG00000002262)	TOM1L1 (ENSFALG00000002261)	ENSFALG00000027180	CA10 (ENSFALG00000000813)	ENSFALG00000028598	UTP18 (ENSFALG00000001407)	MBTD1 (ENSFALG00000001406)	ENSFALG00000001403	SPAG9 (ENSFALG00000001401) ##22	WFIKKN2 (ENSFALG00000027952)	TOB1 (ENSFALG00000015119)	ENSFALG00000026197	ENSFALG00000025723	LUC7L3 (ENSFALG00000001397)	ANKRD40 (ENSFALG00000001393)	ENSFALG00000001391	CACNA1G (ENSFALG00000001356)	SPATA20 (ENSFALG00000001344)	EPN3 (ENSFALG00000001342)	MYCBPAP (ENSFALG00000001334)	RSAD1 (ENSFALG00000001327)	ENSFALG00000001325	ACSF2 (ENSFALG00000001284)	LRRC59 (ENSFALG00000028159)
Passeriformes_g	ANCESTRAL SPECIES	20	ENSGT00940000163071	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Passeroidea	ANCESTRAL SPECIES	19	ENSGT00390000006009.a.a.a	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Zebra finch	MODERN SPECIES	9	ANKFN1 (ENSTGUG00000022909)	PCTP (ENSTGUG00000022225)	TMEM100 (ENSTGUG00000009511)	SMIM36 (ENSTGUG00000028981)	MMD (ENSTGUG00000009491)	HLF (ENSTGUG00000028342)	STXBP4 (ENSTGUG00000009465)	COX11 (ENSTGUG00000027006)	TOM1L1 (ENSTGUG00000009453)	CA10 (ENSTGUG00000009427)	ENSTGUG00000021884	UTP18 (ENSTGUG00000009412)	MBTD1 (ENSTGUG00000009373)	NME2 (ENSTGUG00000009349)	NME1 (ENSTGUG00000021211)	SPAG9 (ENSTGUG00000009239) ##22	TOB1 (ENSTGUG00000009238)	WFIKKN2 (ENSTGUG00000009235)	ENSTGUG00000019708	LUC7L3 (ENSTGUG00000009216)	ANKRD40 (ENSTGUG00000009204)	ENSTGUG00000009151	CACNA1G (ENSTGUG00000009049)	SPATA20 (ENSTGUG00000009022)	EPN3 (ENSTGUG00000009010)	MYCBPAP (ENSTGUG00000008998)	RSAD1 (ENSTGUG00000008992)	ENSTGUG00000008987	ACSF2 (ENSTGUG00000008946)	LRRC59 (ENSTGUG00000008932)	EME1 (ENSTGUG00000008929) ##25
Common canary	MODERN SPECIES	27	C17orf67 (ENSSCAG00000014342)	NOG (ENSSCAG00000014344)	ENSSCAG00000014348	ENSSCAG00000014354	TMEM100 (ENSSCAG00000014362)	MMD (ENSSCAG00000014371)	HLF (ENSSCAG00000014375)	STXBP4 (ENSSCAG00000014383)	COX11 (ENSSCAG00000014401)	TOM1L1 (ENSSCAG00000014407)	CA10 (ENSSCAG00000014414)	UTP18 (ENSSCAG00000014422)	MBTD1 (ENSSCAG00000014430)	NME2 (ENSSCAG00000014434)	NME1 (ENSSCAG00000014436)	SPAG9 (ENSSCAG00000014548) ##22	TOB1 (ENSSCAG00000014889)	WFIKKN2 (ENSSCAG00000014890)	ENSSCAG00000014897	LUC7L3 (ENSSCAG00000014900)	ANKRD40 (ENSSCAG00000014911)	ENSSCAG00000014920	CACNA1G (ENSSCAG00000014940)	SPATA20 (ENSSCAG00000014964)	EPN3 (ENSSCAG00000015002)	MYCBPAP (ENSSCAG00000015008)	RSAD1 (ENSSCAG00000000035)	ACSF2 (ENSSCAG00000000082)	CHAD (ENSSCAG00000000323)	LRRC59 (ENSSCAG00000000356)	EME1 (ENSSCAG00000000390) ##25
Medium ground finch	MODERN SPECIES	73												UTP18 (ENSGFOG00000004702)	MBTD1 (ENSGFOG00000004674)	NME2 (ENSGFOG00000004666)	NME1 (ENSGFOG00000004644)	SPAG9 (ENSGFOG00000004567) ##22	TOB1 (ENSGFOG00000004550)	WFIKKN2 (ENSGFOG00000004542)	ANKRD40CL (ENSGFOG00000004534)	LUC7L3 (ENSGFOG00000004518)	ANKRD40 (ENSGFOG00000004495)	ENSGFOG00000004461	CACNA1G (ENSGFOG00000004394)	ENSGFOG00000004380	SPATA20 (ENSGFOG00000004278)	EPN3 (ENSGFOG00000004250)	MYCBPAP (ENSGFOG00000004221)	ENSGFOG00000004211	ACSF2 (ENSGFOG00000004190)	LRRC59 (ENSGFOG00000004182)	EME1 (ENSGFOG00000004168) ##25
Great tit	MODERN SPECIES	8	DGKE (ENSPMJG00000018081)	C17orf67 (ENSPMJG00000018082)	ANKFN1 (ENSPMJG00000018085)	PCTP (ENSPMJG00000018087)	TMEM100 (ENSPMJG00000018088)	MMD (ENSPMJG00000018090)	HLF (ENSPMJG00000018091)	STXBP4 (ENSPMJG00000018092)	COX11 (ENSPMJG00000018093)	TOM1L1 (ENSPMJG00000018094)	CA10 (ENSPMJG00000018097)	UTP18 (ENSPMJG00000018098)	MBTD1 (ENSPMJG00000018100)	NME2 (ENSPMJG00000018099)	NME1 (ENSPMJG00000018101)	SPAG9 (ENSPMJG00000018102) ##22	TOB1 (ENSPMJG00000018104)	WFIKKN2 (ENSPMJG00000018105)	ENSPMJG00000018106	LUC7L3 (ENSPMJG00000018107)	ANKRD40 (ENSPMJG00000018108)	ENSPMJG00000018109	CACNA1G (ENSPMJG00000018110)	SPATA20 (ENSPMJG00000018111)	EPN3 (ENSPMJG00000018112)	MYCBPAP (ENSPMJG00000018113)	RSAD1 (ENSPMJG00000018114)	ACSF2 (ENSPMJG00000018115)	ENSPMJG00000018305	LRRC59 (ENSPMJG00000018307)	EME1 (ENSPMJG00000018311) ##25
Galloanserae	ANCESTRAL SPECIES	19	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00390000017385	ENSGT00530000063937.a ##25
Anatidae	ANCESTRAL SPECIES	18	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00390000017385	ENSGT00530000063937.a ##25
Duck	MODERN SPECIES	9	PCTP (ENSAPLG00000004610)	TMEM100 (ENSAPLG00000001097)	ENSAPLG00000023014	MMD (ENSAPLG00000004393)	HLF (ENSAPLG00000004386)	STXBP4 (ENSAPLG00000004179)	COX11 (ENSAPLG00000019353)	TOM1L1 (ENSAPLG00000003778)	ENSAPLG00000000972	ENSAPLG00000022944	CA10 (ENSAPLG00000003762)	UTP18 (ENSAPLG00000003482)	MBTD1 (ENSAPLG00000002996)	NME2 (ENSAPLG00000030083)	NME1 (ENSAPLG00000020737)	SPAG9 (ENSAPLG00000015555) ##22	TOB1 (ENSAPLG00000000946)	WFIKKN2 (ENSAPLG00000015552)	ENSAPLG00000015535	LUC7L3 (ENSAPLG00000015263)	ANKRD40 (ENSAPLG00000015126)	ENSAPLG00000013703	CACNA1G (ENSAPLG00000015833)	EPN3 (ENSAPLG00000025709)	MYCBPAP (ENSAPLG00000003268)	RSAD1 (ENSAPLG00000031173)	ACSF2 (ENSAPLG00000003799)	ENSAPLG00000004246	LRRC59 (ENSAPLG00000004364)	EME1 (ENSAPLG00000022015) ##25	ENSAPLG00000024946
Pink-footed goose	MODERN SPECIES	34		PCTP (ENSABRG00000006321)	TMEM100 (ENSABRG00000006507)	SMIM36 (ENSABRG00000006511)	MMD (ENSABRG00000006513)	HLF (ENSABRG00000006518)	STXBP4 (ENSABRG00000006539)	COX11 (ENSABRG00000006623)	TOM1L1 (ENSABRG00000006633)	ENSABRG00000006704	CA10 (ENSABRG00000006739)	UTP18 (ENSABRG00000006761)	MBTD1 (ENSABRG00000006772)	NME2 (ENSABRG00000006800)	NME1 (ENSABRG00000006818)	SPAG9 (ENSABRG00000007064) ##22	TOB1 (ENSABRG00000012283)	WFIKKN2 (ENSABRG00000012284)	ANKRD40CL (ENSABRG00000012298)	ANKRD40 (ENSABRG00000012310)	LUC7L3 (ENSABRG00000012313)	ENSABRG00000012320	CACNA1G (ENSABRG00000012621)	SPATA20 (ENSABRG00000015503)	EPN3 (ENSABRG00000015518)	MYCBPAP (ENSABRG00000015525)	ACSF2 (ENSABRG00000015535)	ENSABRG00000015551	LRRC59 (ENSABRG00000015557)	EME1 (ENSABRG00000015563) ##25	MRPL27 (ENSABRG00000015570)
Phasianidae	ANCESTRAL SPECIES	18	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213.z	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867.f	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00390000017385	ENSGT00530000063937.a ##25
Japanese quail	MODERN SPECIES	9	NOG (ENSCJPG00005021404)	ENSCJPG00005021405	PCTP (ENSCJPG00005021406)	TMEM100 (ENSCJPG00005021407)	MMD (ENSCJPG00005021408)	HLF (ENSCJPG00005021409)	STXBP4 (ENSCJPG00005021410)	COX11 (ENSCJPG00005021411)	TOM1L1 (ENSCJPG00005021412)	ENSCJPG00005021414	CA10 (ENSCJPG00005021416)	UTP18 (ENSCJPG00005021417)	MBTD1 (ENSCJPG00005021418)	NME2 (ENSCJPG00005021419)	NME1 (ENSCJPG00005021420)	SPAG9 (ENSCJPG00005021421) ##22	TOB1 (ENSCJPG00005021438)	WFIKKN2 (ENSCJPG00005021439)	ENSCJPG00005021440	LUC7L3 (ENSCJPG00005021441)	ANKRD40 (ENSCJPG00005021444)	ENSCJPG00005021451	CACNA1G (ENSCJPG00005021465)	EPN3 (ENSCJPG00005021525)	MYCBPAP (ENSCJPG00005021526)	ACSF2 (ENSCJPG00005021527)	ENSCJPG00005021529	LRRC59 (ENSCJPG00005021530)	EME1 (ENSCJPG00005021531) ##25	MRPL27 (ENSCJPG00005021532)	XYLT2 (ENSCJPG00005021533)
Phasianidae_b	ANCESTRAL SPECIES	25	ENSGT00390000006009.a.a.a	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213.z	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867.f	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00390000017385	ENSGT00530000063937.a ##25
Chicken	MODERN SPECIES	9	ENSGALG00010029344	ARL16 (ENSGALG00010029346)	HGS (ENSGALG00010029348)	MRPL12 (ENSGALG00010029350)	ENSGALG00010029351	GCGR (ENSGALG00010029353)	MCRIP1 (ENSGALG00010029355)	P4HB (ENSGALG00010030104)	ARHGDIA (ENSGALG00010029357)	ALYREF (ENSGALG00010029361)	ANAPC11 (ENSGALG00010029364)	PCYT2 (ENSGALG00010029275)	MAFG (ENSGALG00010029286)	PYCR1 (ENSGALG00010029288)	NME1 (ENSGALG00010029243)	SPAG9 (ENSGALG00010029250) ##22	TOB1 (ENSGALG00010029263)	WFIKKN2 (ENSGALG00010029277)	LUC7L3 (ENSGALG00010029282)	ANKRD40 (ENSGALG00010029287)	ABCC3 (ENSGALG00010029290)	CACNA1G (ENSGALG00010029724)	SPATA20 (ENSGALG00010029636)	EPN3 (ENSGALG00010029638)	MYCBPAP (ENSGALG00010029644)	RSAD1 (ENSGALG00010029647)	ACSF2 (ENSGALG00010029650)	CHAD (ENSGALG00010029651)	LRRC59 (ENSGALG00010029652)	EME1 (ENSGALG00010029654) ##25	MRPL27 (ENSGALG00010029656)
Turkey	MODERN SPECIES	12	NOG (ENSMGAG00000015423)	ANKFN1 (ENSMGAG00000008338)	PCTP (ENSMGAG00000008361)	TMEM100 (ENSMGAG00000021065)	SMIM36 (ENSMGAG00000017788)	MMD (ENSMGAG00000019227)	HLF (ENSMGAG00000016500)	STXBP4 (ENSMGAG00000008400)	COX11 (ENSMGAG00000019367)	TOM1L1 (ENSMGAG00000008425)	ENSMGAG00000015425	CA10 (ENSMGAG00000008447)	ENSMGAG00000008456	MBTD1 (ENSMGAG00000008493)	NME1 (ENSMGAG00000008528)	SPAG9 (ENSMGAG00000008549) ##22	TOB1 (ENSMGAG00000008642)	WFIKKN2 (ENSMGAG00000008648)	ANKRD40CL (ENSMGAG00000021544)	LUC7L3 (ENSMGAG00000008655)	ANKRD40 (ENSMGAG00000008693)	ENSMGAG00000008701	CACNA1G (ENSMGAG00000008773)	SPATA20 (ENSMGAG00000008988)	EPN3 (ENSMGAG00000009015)	MYCBPAP (ENSMGAG00000009042)	ACSF2 (ENSMGAG00000009074)	ENSMGAG00000019219	ENSMGAG00000009108	LRRC59 (ENSMGAG00000009114)	MRPL27 (ENSMGAG00000009149)
African ostrich	MODERN SPECIES	761	ANKFN1 (ENSSCUG00000011533)	PCTP (ENSSCUG00000011532)	TMEM100 (ENSSCUG00000011531)	SMIM36 (ENSSCUG00000011530)	MMD (ENSSCUG00000011528)	HLF (ENSSCUG00000011527)	STXBP4 (ENSSCUG00000011525)	COX11 (ENSSCUG00000011523)	TOM1L1 (ENSSCUG00000011521)	ENSSCUG00000011518	CA10 (ENSSCUG00000011512)	ENSSCUG00000011509	MBTD1 (ENSSCUG00000011507)	NME2 (ENSSCUG00000011506)	NME1 (ENSSCUG00000011504)	SPAG9 (ENSSCUG00000011495) ##22	TOB1 (ENSSCUG00000011487)	WFIKKN2 (ENSSCUG00000011486)	ENSSCUG00000011483	LUC7L3 (ENSSCUG00000011480)	ANKRD40 (ENSSCUG00000011478)	ENSSCUG00000011460	CACNA1G (ENSSCUG00000011446)	SPATA20 (ENSSCUG00000011442)	ENSSCUG00000011440	MYCBPAP (ENSSCUG00000011439)	ENSSCUG00000011435	ACSF2 (ENSSCUG00000011430)	LRRC59 (ENSSCUG00000011429)	EME1 (ENSSCUG00000011427) ##25	MRPL27 (ENSSCUG00000011425)
Australian saltwater crocodile	MODERN SPECIES	47	ENSCPRG00005002125	PCTP (ENSCPRG00005002133)	TMEM100 (ENSCPRG00005002148)	MMD (ENSCPRG00005002159)	HLF (ENSCPRG00005002161)	STXBP4 (ENSCPRG00005002170)	COX11 (ENSCPRG00005002196)	ENSCPRG00005002207	ENSCPRG00005002210	ENSCPRG00005002214	CA10 (ENSCPRG00005002222)	UTP18 (ENSCPRG00005002230)	MBTD1 (ENSCPRG00005002236)	ENSCPRG00005002251	ENSCPRG00005002257	SPAG9 (ENSCPRG00005002285) ##22	TOB1 (ENSCPRG00005002344)	WFIKKN2 (ENSCPRG00005002347)	LUC7L3 (ENSCPRG00005002351)	ANKRD40 (ENSCPRG00005002355)	ENSCPRG00005002364	ENSCPRG00005002395	SPATA20 (ENSCPRG00005002403)	EPN3 (ENSCPRG00005002422)	MYCBPAP (ENSCPRG00005002427)	RSAD1 (ENSCPRG00005002439)	ACSF2 (ENSCPRG00005002449)	ENSCPRG00005002459	ENSCPRG00005002462	EME1 (ENSCPRG00005002470) ##25	ENSCPRG00005002490
Cryptodira	ANCESTRAL SPECIES	21	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Testudinoidea	ANCESTRAL SPECIES	14	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a ##25
Emydidae	ANCESTRAL SPECIES	17	ENSGT00940000159856	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Three-toed box turtle	MODERN SPECIES	90	NOG (ENSTMTG00000008786)	ENSTMTG00000008793	PCTP (ENSTMTG00000008821)	TMEM100 (ENSTMTG00000008838)	SMIM36 (ENSTMTG00000008844)	MMD (ENSTMTG00000008851)	HLF (ENSTMTG00000008866)	STXBP4 (ENSTMTG00000008895)	COX11 (ENSTMTG00000008981)	TOM1L1 (ENSTMTG00000009032)	ENSTMTG00000009060	CA10 (ENSTMTG00000009083)	UTP18 (ENSTMTG00000009146)	MBTD1 (ENSTMTG00000009173)	NME2 (ENSTMTG00000009247)	SPAG9 (ENSTMTG00000009280) ##22	TOB1 (ENSTMTG00000009343)	WFIKKN2 (ENSTMTG00000009358)	ANKRD40 (ENSTMTG00000009386)	LUC7L3 (ENSTMTG00000009419)	ENSTMTG00000010103	CACNA1G (ENSTMTG00000016104)	SPATA20 (ENSTMTG00000016198)	EPN3 (ENSTMTG00000016237)	MYCBPAP (ENSTMTG00000016259)	RSAD1 (ENSTMTG00000016383)	ACSF2 (ENSTMTG00000016405)	CHAD (ENSTMTG00000016449)	LRRC59 (ENSTMTG00000016466)	EME1 (ENSTMTG00000016480) ##25	MRPL27 (ENSTMTG00000016494)
painted turtle	MODERN SPECIES	2409	IGF2R (ENSCPBG00000002366)	ENSCPBG00000001937	ENSCPBG00000001916	SLC22A3 (ENSCPBG00000001892)	ENSCPBG00000001033	MAP3K4 (ENSCPBG00000000806)	AGPAT4 (ENSCPBG00000000721)	ENSCPBG00000000680	ENSCPBG00000000631	ENSCPBG00000000618	CA10 (ENSCPBG00000000583)	UTP18 (ENSCPBG00000000512)	MBTD1 (ENSCPBG00000000400)	NME2 (ENSCPBG00000000369)	NME1 (ENSCPBG00000000359)	SPAG9 (ENSCPBG00000000241) ##22	TOB1 (ENSCPBG00000028205)	WFIKKN2 (ENSCPBG00000028204)	ENSCPBG00000028203	LUC7L3 (ENSCPBG00000028202)	ANKRD40 (ENSCPBG00000028201)	ENSCPBG00000028200	CACNA1G (ENSCPBG00000028199)	EPN3 (ENSCPBG00000028187)	MYCBPAP (ENSCPBG00000028186)	RSAD1 (ENSCPBG00000028185)	ENSCPBG00000028183	ACSF2 (ENSCPBG00000028182)	LRRC59 (ENSCPBG00000028181)	EME1 (ENSCPBG00000028180) ##25	MRPL27 (ENSCPBG00000028179)
Testudinidae	ANCESTRAL SPECIES	18	ENSGT00940000163071	ENSGT00940000156843	ENSGT00940000154322.A	ENSGT00980000198588	ENSGT00940000157428	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325	ENSGT00940000155223.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000154464.a	ENSGT00940000156830	ENSGT00390000017385	ENSGT00530000063937.a ##25
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	6	PCTP (ENSGEVG00005012563)	TMEM100 (ENSGEVG00005012533)	SMIM36 (ENSGEVG00005012519)	MMD (ENSGEVG00005012449)	HLF (ENSGEVG00005012421)	STXBP4 (ENSGEVG00005012358)	COX11 (ENSGEVG00005012328)	TOM1L1 (ENSGEVG00005012295)	ENSGEVG00005012226	CA10 (ENSGEVG00005012125)	UTP18 (ENSGEVG00005012080)	MBTD1 (ENSGEVG00005012008)	NME2 (ENSGEVG00005011975)	NME1 (ENSGEVG00005011956)	ENSGEVG00005011850 ##22	ENSGEVG00005011805 ##22	TOB1 (ENSGEVG00005011778)	WFIKKN2 (ENSGEVG00005011742)	ENSGEVG00005011701	LUC7L3 (ENSGEVG00005011664)	ANKRD40 (ENSGEVG00005011650)	ENSGEVG00005011596	ENSGEVG00005011529	SPATA20 (ENSGEVG00005011465)	EPN3 (ENSGEVG00005011378)	MYCBPAP (ENSGEVG00005010488)	RSAD1 (ENSGEVG00005010381)	CHAD (ENSGEVG00005010353)	ACSF2 (ENSGEVG00005010323)	LRRC59 (ENSGEVG00005010299)	EME1 (ENSGEVG00005010281) ##25
Goode s thornscrub tortoise	MODERN SPECIES	6	ENSGEVG00005012745	PCTP (ENSGEVG00005012563)	TMEM100 (ENSGEVG00005012533)	SMIM36 (ENSGEVG00005012519)	MMD (ENSGEVG00005012449)	HLF (ENSGEVG00005012421)	STXBP4 (ENSGEVG00005012358)	COX11 (ENSGEVG00005012328)	TOM1L1 (ENSGEVG00005012295)	ENSGEVG00005012226	CA10 (ENSGEVG00005012125)	UTP18 (ENSGEVG00005012080)	MBTD1 (ENSGEVG00005012008)	NME2 (ENSGEVG00005011975)	NME1 (ENSGEVG00005011956)	ENSGEVG00005011850 ##22	ENSGEVG00005011805 ##22	TOB1 (ENSGEVG00005011778)	WFIKKN2 (ENSGEVG00005011742)	ENSGEVG00005011701	LUC7L3 (ENSGEVG00005011664)	ANKRD40 (ENSGEVG00005011650)	ENSGEVG00005011596	ENSGEVG00005011529	SPATA20 (ENSGEVG00005011465)	EPN3 (ENSGEVG00005011378)	MYCBPAP (ENSGEVG00005010488)	RSAD1 (ENSGEVG00005010381)	CHAD (ENSGEVG00005010353)	ACSF2 (ENSGEVG00005010323)	LRRC59 (ENSGEVG00005010299)
Abingdon island giant tortoise	MODERN SPECIES	1081					TCF21 (ENSCABG00000012770)	TBPL1 (ENSCABG00000012768)	SLC2A12 (ENSCABG00000012734)	SGK1 (ENSCABG00000012729)	ENSCABG00000012728	ALDH8A1 (ENSCABG00000012726)	HBS1L (ENSCABG00000012723)	UTP18 (ENSCABG00000012721)	MBTD1 (ENSCABG00000012718)	NME2 (ENSCABG00000012717)	NME1 (ENSCABG00000012711)	SPAG9 (ENSCABG00000011978) ##22	TOB1 (ENSCABG00000011959)	WFIKKN2 (ENSCABG00000011957)	ENSCABG00000011955	LUC7L3 (ENSCABG00000011953)	ANKRD40 (ENSCABG00000011949)	ENSCABG00000011947	ENSCABG00000011946	ENSCABG00000011943	ENSCABG00000011941	SPATA20 (ENSCABG00000011933)	EPN3 (ENSCABG00000011931)	MYCBPAP (ENSCABG00000011928)	RSAD1 (ENSCABG00000011925)	ENSCABG00000011918	ACSF2 (ENSCABG00000011916)
Chinese turtle	MODERN SPECIES	1213	NOG (ENSPSIG00000001914)	ENSPSIG00000007025	ANKFN1 (ENSPSIG00000017061)	PCTP (ENSPSIG00000016941)	TMEM100 (ENSPSIG00000001911)	MMD (ENSPSIG00000016516)	HLF (ENSPSIG00000016356)	STXBP4 (ENSPSIG00000016103)	COX11 (ENSPSIG00000015982)	TOM1L1 (ENSPSIG00000015190)	ENSPSIG00000015121	CA10 (ENSPSIG00000014709)	ENSPSIG00000014449	MBTD1 (ENSPSIG00000014082)	ENSPSIG00000013988	SPAG9 (ENSPSIG00000013074) ##22	TOB1 (ENSPSIG00000001910)	WFIKKN2 (ENSPSIG00000013070)	ANKRD40CL (ENSPSIG00000013002)	LUC7L3 (ENSPSIG00000012888)	ANKRD40 (ENSPSIG00000012830)	ENSPSIG00000011887	CACNA1G (ENSPSIG00000009148)	SPATA20 (ENSPSIG00000008376)	EPN3 (ENSPSIG00000008046)	MYCBPAP (ENSPSIG00000007837)	RSAD1 (ENSPSIG00000007809)	ENSPSIG00000007780	ACSF2 (ENSPSIG00000007036)	LRRC59 (ENSPSIG00000006907)	MRPL27 (ENSPSIG00000006901)
Lepidosauria	ANCESTRAL SPECIES	26												ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1429	ENSSPUG00000011216	ARL16 (ENSSPUG00000011195)	HGS (ENSSPUG00000011094)	ENSSPUG00000011067	MRPL12 (ENSSPUG00000011062)	SLC25A10 (ENSSPUG00000011030)	GCGR (ENSSPUG00000011005)	MCRIP1 (ENSSPUG00000010978)	PPP1R27 (ENSSPUG00000010964)	P4HB (ENSSPUG00000010934)	ARHGDIA (ENSSPUG00000010913)	UTP18 (ENSSPUG00000010862)	MBTD1 (ENSSPUG00000010840)	NME2 (ENSSPUG00000010826)	NME1 (ENSSPUG00000010785)	ENSSPUG00000010757 ##22	ENSSPUG00000010733 ##22	ENSSPUG00000010712 ##22	TOB1 (ENSSPUG00000010699)	ENSSPUG00000010689	LUC7L3 (ENSSPUG00000010664)	ANKRD40 (ENSSPUG00000010652)	ENSSPUG00000010603	ENSSPUG00000010581	CACNA1G (ENSSPUG00000010451)	SPATA20 (ENSSPUG00000010375)	EPN3 (ENSSPUG00000010350)	ENSSPUG00000010335	ENSSPUG00000010328	ENSSPUG00000010320	RSAD1 (ENSSPUG00000010302)
tuatara	MODERN SPECIES	1429	HGS (ENSSPUG00000011094)	ENSSPUG00000011067	MRPL12 (ENSSPUG00000011062)	SLC25A10 (ENSSPUG00000011030)	GCGR (ENSSPUG00000011005)	MCRIP1 (ENSSPUG00000010978)	PPP1R27 (ENSSPUG00000010964)	P4HB (ENSSPUG00000010934)	ARHGDIA (ENSSPUG00000010913)	UTP18 (ENSSPUG00000010862)	MBTD1 (ENSSPUG00000010840)	NME2 (ENSSPUG00000010826)	NME1 (ENSSPUG00000010785)	ENSSPUG00000010757 ##22	ENSSPUG00000010733 ##22	ENSSPUG00000010712 ##22	TOB1 (ENSSPUG00000010699)	ENSSPUG00000010689	LUC7L3 (ENSSPUG00000010664)	ANKRD40 (ENSSPUG00000010652)	ENSSPUG00000010603	ENSSPUG00000010581	CACNA1G (ENSSPUG00000010451)	SPATA20 (ENSSPUG00000010375)	EPN3 (ENSSPUG00000010350)	ENSSPUG00000010335	ENSSPUG00000010328	ENSSPUG00000010320	RSAD1 (ENSSPUG00000010302)	ENSSPUG00000010276	ACSF2 (ENSSPUG00000010194)
tuatara	MODERN SPECIES	1429	ARL16 (ENSSPUG00000011195)	HGS (ENSSPUG00000011094)	ENSSPUG00000011067	MRPL12 (ENSSPUG00000011062)	SLC25A10 (ENSSPUG00000011030)	GCGR (ENSSPUG00000011005)	MCRIP1 (ENSSPUG00000010978)	PPP1R27 (ENSSPUG00000010964)	P4HB (ENSSPUG00000010934)	ARHGDIA (ENSSPUG00000010913)	UTP18 (ENSSPUG00000010862)	MBTD1 (ENSSPUG00000010840)	NME2 (ENSSPUG00000010826)	NME1 (ENSSPUG00000010785)	ENSSPUG00000010757 ##22	ENSSPUG00000010733 ##22	ENSSPUG00000010712 ##22	TOB1 (ENSSPUG00000010699)	ENSSPUG00000010689	LUC7L3 (ENSSPUG00000010664)	ANKRD40 (ENSSPUG00000010652)	ENSSPUG00000010603	ENSSPUG00000010581	CACNA1G (ENSSPUG00000010451)	SPATA20 (ENSSPUG00000010375)	EPN3 (ENSSPUG00000010350)	ENSSPUG00000010335	ENSSPUG00000010328	ENSSPUG00000010320	RSAD1 (ENSSPUG00000010302)	ENSSPUG00000010276
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000154003.B	ENSGT00940000153500.a.b	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000154003.B	ENSGT00940000153500.a.b	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00960000189630	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT01000000219980	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385
Common wall lizard	MODERN SPECIES	10	DCXR (ENSPMRG00000006003)	ENSPMRG00000006018	RFNG (ENSPMRG00000006035)	GPS1 (ENSPMRG00000006095)	ENSPMRG00000006107	DUS1L (ENSPMRG00000006116)	FASN (ENSPMRG00000006130)	CCDC57 (ENSPMRG00000006157)	ENSPMRG00000006168	SLC16A3 (ENSPMRG00000006172)	CSNK1D (ENSPMRG00000006184)	UTP18 (ENSPMRG00000006203)	MBTD1 (ENSPMRG00000006220)	NME2 (ENSPMRG00000006231)	NME1 (ENSPMRG00000006239)	SPAG9 (ENSPMRG00000006286) ##22	TOB1 (ENSPMRG00000006501)	WFIKKN2 (ENSPMRG00000006505)	ENSPMRG00000006509	LUC7L3 (ENSPMRG00000006518)	ANKRD40 (ENSPMRG00000006530)	ENSPMRG00000007314	CACNA1G (ENSPMRG00000011373)	ENSPMRG00000013641	SPATA20 (ENSPMRG00000013645)	EPN3 (ENSPMRG00000013656)	MYCBPAP (ENSPMRG00000013666)	ENSPMRG00000013699	ENSPMRG00000013719	ENSPMRG00000013728	ACSF2 (ENSPMRG00000013734)
Argentine black and white tegu	MODERN SPECIES	1	RAC3 (ENSSMRG00000023340)	DCXR (ENSSMRG00000023339)	ENSSMRG00000023338	RFNG (ENSSMRG00000023337)	GPS1 (ENSSMRG00000023336)	DUS1L (ENSSMRG00000023335)	FASN (ENSSMRG00000023334)	ENSSMRG00000023333	SLC16A3 (ENSSMRG00000023332)	CSNK1D (ENSSMRG00000023331)	UTP18 (ENSSMRG00000023330)	MBTD1 (ENSSMRG00000023329)	NME2 (ENSSMRG00000023328)	NME1 (ENSSMRG00000023327)	ENSSMRG00000023326	SPAG9 (ENSSMRG00000023325) ##22	TOB1 (ENSSMRG00000023324)	WFIKKN2 (ENSSMRG00000023323)	ENSSMRG00000023322	LUC7L3 (ENSSMRG00000023321)	ANKRD40 (ENSSMRG00000023320)	ENSSMRG00000023287	CACNA1G (ENSSMRG00000023251)	ENSSMRG00000023250	SPATA20 (ENSSMRG00000023247)	EPN3 (ENSSMRG00000023246)	MYCBPAP (ENSSMRG00000023245)	RSAD1 (ENSSMRG00000023244)	ENSSMRG00000023243	ENSSMRG00000023242	ACSF2 (ENSSMRG00000023241)
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000154003.B	ENSGT00940000153500.a.b	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00390000017385
Elapidae	ANCESTRAL SPECIES	2	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00390000017385
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	LRRC45 (ENSNNAG00000012156)	RAC3 (ENSNNAG00000012134)	DCXR (ENSNNAG00000012074)	RFNG (ENSNNAG00000011894)	ENSNNAG00000011874	GPS1 (ENSNNAG00000011829)	DUS1L (ENSNNAG00000011747)	FASN (ENSNNAG00000010596)	ENSNNAG00000010394	CCDC57 (ENSNNAG00000010284)	SLC16A3 (ENSNNAG00000010260)	CSNK1D (ENSNNAG00000010070)	UTP18 (ENSNNAG00000010013)	MBTD1 (ENSNNAG00000009948)	NME1 (ENSNNAG00000009920)	ENSNNAG00000009901 ##22	ENSNNAG00000009825 ##22	TOB1 (ENSNNAG00000009809)	WFIKKN2 (ENSNNAG00000009776)	ENSNNAG00000009667	LUC7L3 (ENSNNAG00000009617)	ANKRD40 (ENSNNAG00000009598)	ENSNNAG00000008999	CACNA1G (ENSNNAG00000008584)	ENSNNAG00000008539	SPATA20 (ENSNNAG00000008427)	EPN3 (ENSNNAG00000008397)	MYCBPAP (ENSNNAG00000007875)	RSAD1 (ENSNNAG00000007799)	ENSNNAG00000007731	ACSF2 (ENSNNAG00000007611)
Indian cobra	MODERN SPECIES	1	RAC3 (ENSNNAG00000012134)	DCXR (ENSNNAG00000012074)	RFNG (ENSNNAG00000011894)	ENSNNAG00000011874	GPS1 (ENSNNAG00000011829)	DUS1L (ENSNNAG00000011747)	FASN (ENSNNAG00000010596)	ENSNNAG00000010394	CCDC57 (ENSNNAG00000010284)	SLC16A3 (ENSNNAG00000010260)	CSNK1D (ENSNNAG00000010070)	UTP18 (ENSNNAG00000010013)	MBTD1 (ENSNNAG00000009948)	NME1 (ENSNNAG00000009920)	ENSNNAG00000009901 ##22	ENSNNAG00000009825 ##22	TOB1 (ENSNNAG00000009809)	WFIKKN2 (ENSNNAG00000009776)	ENSNNAG00000009667	LUC7L3 (ENSNNAG00000009617)	ANKRD40 (ENSNNAG00000009598)	ENSNNAG00000008999	CACNA1G (ENSNNAG00000008584)	ENSNNAG00000008539	SPATA20 (ENSNNAG00000008427)	EPN3 (ENSNNAG00000008397)	MYCBPAP (ENSNNAG00000007875)	RSAD1 (ENSNNAG00000007799)	ENSNNAG00000007731	ACSF2 (ENSNNAG00000007611)	EME1 (ENSNNAG00000007439) ##25
Elapidae_a	ANCESTRAL SPECIES	18	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00960000189630	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00390000017385	ENSGT00530000063937.a ##25
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	602															NME1 (ENSLLTG00000018221)	ENSLLTG00000018226 ##22
Blue-lipped sea krait	MODERN SPECIES	4137																ENSLLTG00000011596 ##22
Acanthophiinae	ANCESTRAL SPECIES	18	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00960000189630	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b ##22	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000163867	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000161826.C	ENSGT00390000017385	ENSGT00530000063937.a ##25
Mainland tiger snake	MODERN SPECIES	19	ENSNSUG00000010653	ENSNSUG00000010654	CENPX (ENSNSUG00000010655)	LRRC45 (ENSNSUG00000010657)	RAC3 (ENSNSUG00000010663)	DCXR (ENSNSUG00000010688)	RFNG (ENSNSUG00000010689)	GPS1 (ENSNSUG00000010699)	DUS1L (ENSNSUG00000010701)	FASN (ENSNSUG00000010866)	SLC16A3 (ENSNSUG00000012888)	CSNK1D (ENSNSUG00000012889)	ENSNSUG00000012890	MBTD1 (ENSNSUG00000012894)	NME1 (ENSNSUG00000012962)	SPAG9 (ENSNSUG00000012963) ##22	ENSNSUG00000013181	TOB1 (ENSNSUG00000013182)	WFIKKN2 (ENSNSUG00000013183)	ENSNSUG00000013184	LUC7L3 (ENSNSUG00000013186)	ANKRD40 (ENSNSUG00000013187)	ENSNSUG00000013188	ENSNSUG00000013189	ENSNSUG00000013190	SPATA20 (ENSNSUG00000013191)	EPN3 (ENSNSUG00000013250)	MYCBPAP (ENSNSUG00000013253)	RSAD1 (ENSNSUG00000013257)	ACSF2 (ENSNSUG00000013258)	ENSNSUG00000013260
Eastern brown snake	MODERN SPECIES	17	ASPSCR1 (ENSPTXG00000003305)	LRRC45 (ENSPTXG00000003307)	RAC3 (ENSPTXG00000003313)	DCXR (ENSPTXG00000003314)	RFNG (ENSPTXG00000003317)	GPS1 (ENSPTXG00000003319)	ENSPTXG00000003321	DUS1L (ENSPTXG00000003322)	FASN (ENSPTXG00000003337)	CCDC57 (ENSPTXG00000003448)	SLC16A3 (ENSPTXG00000003450)	CSNK1D (ENSPTXG00000003453)	UTP18 (ENSPTXG00000003454)	MBTD1 (ENSPTXG00000003455)	NME1 (ENSPTXG00000003458)	SPAG9 (ENSPTXG00000003460) ##22	TOB1 (ENSPTXG00000003463)	WFIKKN2 (ENSPTXG00000003466)	ENSPTXG00000003469	LUC7L3 (ENSPTXG00000003472)	ANKRD40 (ENSPTXG00000003479)	ENSPTXG00000003482	ENSPTXG00000003488	SPATA20 (ENSPTXG00000003490)	EPN3 (ENSPTXG00000003495)	RSAD1 (ENSPTXG00000003496)	ACSF2 (ENSPTXG00000003498)	ENSPTXG00000003505	LRRC59 (ENSPTXG00000003509)	EME1 (ENSPTXG00000003515) ##25	MRPL27 (ENSPTXG00000003518)
Lizard	MODERN SPECIES	1	DCXR (ENSACAG00000010147)	ENSACAG00000010142	RFNG (ENSACAG00000010094)	ENSACAG00000042193	GPS1 (ENSACAG00000009996)	DUS1L (ENSACAG00000009945)	FASN (ENSACAG00000009470)	ENSACAG00000037735	CCDC57 (ENSACAG00000002600)	SLC16A3 (ENSACAG00000002565)	CSNK1D (ENSACAG00000002494)	UTP18 (ENSACAG00000002427)	MBTD1 (ENSACAG00000002284)	NME2 (ENSACAG00000002188)	NME1 (ENSACAG00000035641)	SPAG9 (ENSACAG00000001705) ##22	WFIKKN2 (ENSACAG00000001679)	ENSACAG00000040249	LUC7L3 (ENSACAG00000001586)	ANKRD40 (ENSACAG00000001562)	ENSACAG00000035577	ENSACAG00000001396	CACNA1G (ENSACAG00000004254)	SPATA20 (ENSACAG00000005044)	EPN3 (ENSACAG00000005123)	MYCBPAP (ENSACAG00000005166)	RSAD1 (ENSACAG00000005171)	chad (ENSACAG00000037999)	ACSF2 (ENSACAG00000005184)	LRRC59 (ENSACAG00000005254)	EME1 (ENSACAG00000005257) ##25
Anura	ANCESTRAL SPECIES	48	ENSGT00940000156268.a.a	ENSGT00940000160705.C.b	ENSGT00390000008732.b	ENSGT00940000159441	ENSGT00950000185550	ENSGT00940000158127	ENSGT01080000257338.A.b	ENSGT01050000244814.a.b	ENSGT00940000157100	ENSGT00940000165096.b.b	ENSGT00940000163867	ENSGT00940000160624	ENSGT00950000183213.a.b	ENSGT00390000007792	ENSGT00940000154208.c.b	ENSGT00940000153496.a.b ##22
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1388														ENSLLEG00000022805	TOB1 (ENSLLEG00000023515)	ENSLLEG00000023532 ##22
Leishan spiny toad	MODERN SPECIES	1213																ENSLLEG00000016018 ##22
Frog	MODERN SPECIES	1	abcc3 (ENSXETG00000012239)	wfikkn2 (ENSXETG00000025275)	narf (ENSXETG00000012236)	hexd (ENSXETG00000012232)	cybc1 (ENSXETG00000012235)	ogfod3 (ENSXETG00000049225)	uts2rl (ENSXETG00000030401)	ENSXETG00000041857	ENSXETG00000046663	uts2r (ENSXETG00000012229)	ENSXETG00000045085	luc7l3 (ENSXETG00000011062)	znf850 (ENSXETG00000011063)	ankrd40 (ENSXETG00000011061)	tob1 (ENSXETG00000011060)	spag9 (ENSXETG00000011059) ##22	znf684 (ENSXETG00000033314)	ENSXETG00000033713	XB22064855 [provisional:znf300] (ENSXETG00000048895)	ENSXETG00000038493	adprm.2 (ENSXETG00000039023)	tmem220 (ENSXETG00000000664)	adprm (ENSXETG00000011037)	map2k4 (ENSXETG00000011036)	myocd (ENSXETG00000011035)	dnah9 (ENSXETG00000025251)	shisa6 (ENSXETG00000042767)	ENSXETG00000036751	ENSXETG00000048633	wdr45b (ENSXETG00000022804)	ENSXETG00000041875
Coelacanth	MODERN SPECIES	899												CA10 (ENSLACG00000009476)	UTP18 (ENSLACG00000005884)	NME1 (ENSLACG00000005745)	MBTD1 (ENSLACG00000004850)	SPAG9 (ENSLACG00000002172) ##22
Elephant shark	MODERN SPECIES	1727									ENSCMIG00000016072	ENSCMIG00000016075	ENSCMIG00000016076	UTP18 (ENSCMIG00000016079)	nme2a (ENSCMIG00000016081)	MBTD1 (ENSCMIG00000016089)	ENSCMIG00000016095	spag9a (ENSCMIG00000016167) ##22	ENSCMIG00000016380	tob1b (ENSCMIG00000016382)	WFIKKN2 (ENSCMIG00000016387)	ANKRD40 (ENSCMIG00000016388)	luc7l3 (ENSCMIG00000016390)	ENSCMIG00000016489	ca10a (ENSCMIG00000016628)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153496.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153496.b ##22
Euteleostomi	ANCESTRAL SPECIES	937														ENSGT01050000244814.b	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22
Sarcopterygii	ANCESTRAL SPECIES	608												ENSGT00390000006753.A	ENSGT00940000162720.b.b	ENSGT01050000244814.b	ENSGT00940000159441	ENSGT00940000153496.b ##22
Tetrapoda	ANCESTRAL SPECIES	183												ENSGT00390000016654	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000160072	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000162136	ENSGT00940000161197	ENSGT00390000012976
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES	225											ENSGT00940000157149.b	ENSGT00940000162254	ENSGT00390000006753.A	ENSGT00940000162720.b.b	ENSGT00390000007165	ENSGT00940000153496.b.a ##22	ENSGT00940000160072	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000162136	ENSGT00940000161197	ENSGT00390000012976
Frog	MODERN SPECIES	7	ENSXETG00000000128	atg12 (ENSXETG00000000129)	gsg1l (ENSXETG00000000130)	ENSXETG00000034716	rcvrn.2 (ENSXETG00000000137)	ENSXETG00000035401	rpl28 (ENSXETG00000000132)	ube2s (ENSXETG00000000138)	shisa7 (ENSXETG00000035096)	isoc2 (ENSXETG00000000143)	tmem238 (ENSXETG00000041982)	ENSXETG00000047748	ENSXETG00000048139	il11 (ENSXETG00000000148)	ENSXETG00000040884 ##22	ENSXETG00000000150 ##22	ENSXETG00000049138	ENSXETG00000000156	ENSXETG00000046049	myos (ENSXETG00000030651)	ntn1 (ENSXETG00000014390)	ENSXETG00000034767	sult2b1 (ENSXETG00000014385)	ca11 (ENSXETG00000014383)	ENSXETG00000038260	dbp (ENSXETG00000037637)	sphk2 (ENSXETG00000036307)	rpl18 (ENSXETG00000003164)	ENSXETG00000045137	tfpt (ENSXETG00000003165)	prpf31 (ENSXETG00000010916)
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000010781	ENSLLEG00000010760	ENSLLEG00000010655	ENSLLEG00000010542	ENSLLEG00000010464	ENSLLEG00000010428	ENSLLEG00000010401	ENSLLEG00000010305	ENSLLEG00000010285	SHISA7 (ENSLLEG00000010231)	ENSLLEG00000010213	ISOC2 (ENSLLEG00000010121)	TMEM238 (ENSLLEG00000010066)	ENSLLEG00000010047	ENSLLEG00000009996	ENSLLEG00000009537 ##22	RASIP1 (ENSLLEG00000009395)	ENSLLEG00000009368	REXO2 (ENSLLEG00000009292)	ZNF628 (ENSLLEG00000009266)	ENSLLEG00000009140	ENSLLEG00000009027	ENSLLEG00000008990	ENSLLEG00000008957	ENSLLEG00000008925	LIG1 (ENSLLEG00000008575)	ZNF865 (ENSLLEG00000008524)	ENSLLEG00000008507	ENSLLEG00000008478	ENSLLEG00000008430	ENSLLEG00000018796
Anura	ANCESTRAL SPECIES																	ENSGT00940000153496.b.b ##22
Frog	MODERN SPECIES	7	xa-1 (ENSXETG00000043467)	ENSXETG00000000128	atg12 (ENSXETG00000000129)	gsg1l (ENSXETG00000000130)	ENSXETG00000034716	rcvrn.2 (ENSXETG00000000137)	ENSXETG00000035401	rpl28 (ENSXETG00000000132)	ube2s (ENSXETG00000000138)	shisa7 (ENSXETG00000035096)	isoc2 (ENSXETG00000000143)	tmem238 (ENSXETG00000041982)	ENSXETG00000047748	ENSXETG00000048139	il11 (ENSXETG00000000148)	ENSXETG00000040884 ##22	ENSXETG00000000150 ##22	ENSXETG00000049138	ENSXETG00000000156	ENSXETG00000046049	myos (ENSXETG00000030651)	ntn1 (ENSXETG00000014390)	ENSXETG00000034767	sult2b1 (ENSXETG00000014385)	ca11 (ENSXETG00000014383)	ENSXETG00000038260	dbp (ENSXETG00000037637)	sphk2 (ENSXETG00000036307)	rpl18 (ENSXETG00000003164)	ENSXETG00000045137	tfpt (ENSXETG00000003165)
Amniota	ANCESTRAL SPECIES	117														ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00390000006753.A	ENSGT00940000162254	ENSGT00940000157149	ENSGT00950000185550	ENSGT00940000159441	ENSGT00390000008732.b	ENSGT01050000244814.b
Sauria	ANCESTRAL SPECIES	138														ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22
Lepidosauria	ANCESTRAL SPECIES	101	ENSGT00940000163608.a	ENSGT00390000013183	ENSGT00940000155556.d	ENSGT00940000160411	ENSGT00940000170710	ENSGT00940000158808	ENSGT00390000006753.A	ENSGT00940000162254	ENSGT00940000157149	ENSGT00940000159441	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000163150	ENSGT00940000162621	ENSGT00940000160072	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000162136	ENSGT00940000161197	ENSGT00390000012976	ENSGT00940000159269.g.b.a
Episquamata	ANCESTRAL SPECIES	5	ENSGT00510000048131	ENSGT00390000014743	ENSGT00550000075069	ENSGT00390000016605	ENSGT00390000004322	ENSGT01030000235700.a	ENSGT00940000161572	ENSGT00940000162254	ENSGT00940000157149	ENSGT00940000159441	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000156204.wb	ENSGT00940000160072	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136	ENSGT00390000006753.A	ENSGT00940000158808	ENSGT00940000165838	ENSGT00940000170710	ENSGT00940000160411
Toxicofera	ANCESTRAL SPECIES	13	ENSGT00510000048131	ENSGT00390000014743	ENSGT00550000075069	ENSGT00390000016605	ENSGT00390000004322	ENSGT01030000235700.a	ENSGT00940000161572	ENSGT00940000162254	ENSGT00940000157149	ENSGT00940000159441	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000156204.wb	ENSGT00940000160072	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136	ENSGT00390000006753.A	ENSGT00940000158808	ENSGT00940000165838	ENSGT00940000170710	ENSGT00940000160411
Elapidae	ANCESTRAL SPECIES	16	ENSGT00390000014743.c	ENSGT00550000075069	ENSGT00390000016605	ENSGT00390000004322	ENSGT01030000235700.a	ENSGT00940000161572	ENSGT00510000049347	ENSGT00940000162254	ENSGT00940000157149.w	ENSGT00940000159441	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000163150	ENSGT00940000162621	ENSGT00940000160072	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136.e.b	ENSGT00390000006753.A.j	ENSGT00940000158808.d	ENSGT00940000170710	ENSGT00940000160411.c	ENSGT00940000155556.d
Indian cobra	MODERN SPECIES	337	LENG1 (ENSNNAG00000005804)	ENSNNAG00000005835	PRPF31 (ENSNNAG00000006054)	TFPT (ENSNNAG00000006095)	NDUFA3 (ENSNNAG00000006114)	ENSNNAG00000006132	FAM83E (ENSNNAG00000006148)	SPACA4 (ENSNNAG00000006179)	SHISA7 (ENSNNAG00000006196)	ENSNNAG00000006213	RCVRN (ENSNNAG00000006223)	RPL28 (ENSNNAG00000006238)	ENSNNAG00000006246	ENSNNAG00000006279	TMEM238 (ENSNNAG00000006308)	ENSNNAG00000006322 ##22	ENSNNAG00000006348	ENSNNAG00000006393	RASIP1 (ENSNNAG00000006425)	NTN5 (ENSNNAG00000006506)	ENSNNAG00000006631	CA11 (ENSNNAG00000006668)	SULT2B1 (ENSNNAG00000006856)	RPL18 (ENSNNAG00000006885)	SPHK2 (ENSNNAG00000006920)	ENSNNAG00000007028	ISOC2 (ENSNNAG00000007042)	ENSNNAG00000007077	ENSNNAG00000007121	ENSNNAG00000007190	EPN1 (ENSNNAG00000007225)
Elapidae_a	ANCESTRAL SPECIES	22	ENSGT00390000014743.c	ENSGT00550000075069	ENSGT00390000016605	ENSGT00390000004322	ENSGT01030000235700.a	ENSGT00940000161572	ENSGT00510000049347	ENSGT00940000162254	ENSGT00940000157149.w	ENSGT00940000159441	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000163150	ENSGT00940000162621	ENSGT00940000160072	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136.e.b	ENSGT00390000006753.A.j	ENSGT00940000158808.d	ENSGT00940000170710	ENSGT00940000160411.c	ENSGT00940000155556.d
Blue-lipped sea krait	MODERN SPECIES	5698															TMEM238 (ENSLLTG00000007931)	ENSLLTG00000007701 ##22	ENSLLTG00000007626	ENSLLTG00000007572	RASIP1 (ENSLLTG00000007540)
Acanthophiinae	ANCESTRAL SPECIES	31	ENSGT00390000014743.c	ENSGT00550000075069	ENSGT00390000016605	ENSGT00390000004322	ENSGT01030000235700.a	ENSGT00940000161572	ENSGT00510000049347	ENSGT00940000162254	ENSGT00940000157149.w	ENSGT00940000159441.d	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000163150	ENSGT00940000162621	ENSGT00940000160072	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136.e.b	ENSGT00390000006753.A.j	ENSGT00940000158808.d	ENSGT00940000170710	ENSGT00940000160411.c	ENSGT00940000155556.d.e
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	53	PRPF31 (ENSPTXG00000011762)	TFPT (ENSPTXG00000011764)	NDUFA3 (ENSPTXG00000011765)	ENSPTXG00000011766	FAM83E (ENSPTXG00000011768)	SPACA4 (ENSPTXG00000011769)	SHISA7 (ENSPTXG00000011771)	ENSPTXG00000011772	ENSPTXG00000011773	ENSPTXG00000011775	RPL28 (ENSPTXG00000011776)	ENSPTXG00000011777	ENSPTXG00000011778	TMEM238 (ENSPTXG00000011779)	ENSPTXG00000011780 ##22	ENSPTXG00000011781 ##22	ENSPTXG00000011782	ENSPTXG00000011787	RASIP1 (ENSPTXG00000011790)	NTN5 (ENSPTXG00000011791)	ENSPTXG00000011798	CA11 (ENSPTXG00000011799)	SULT2B1 (ENSPTXG00000011800)	RPL18 (ENSPTXG00000011801)	SPHK2 (ENSPTXG00000011802)	DBP (ENSPTXG00000011803)	ISOC2 (ENSPTXG00000011805)	MYH14 (ENSPTXG00000011820)	ENSPTXG00000014659	EPN1 (ENSPTXG00000014661)	ENSPTXG00000014663
Eastern brown snake	MODERN SPECIES	53	ENSPTXG00000011758	PRPF31 (ENSPTXG00000011762)	TFPT (ENSPTXG00000011764)	NDUFA3 (ENSPTXG00000011765)	ENSPTXG00000011766	FAM83E (ENSPTXG00000011768)	SPACA4 (ENSPTXG00000011769)	SHISA7 (ENSPTXG00000011771)	ENSPTXG00000011772	ENSPTXG00000011773	ENSPTXG00000011775	RPL28 (ENSPTXG00000011776)	ENSPTXG00000011777	ENSPTXG00000011778	TMEM238 (ENSPTXG00000011779)	ENSPTXG00000011780 ##22	ENSPTXG00000011781 ##22	ENSPTXG00000011782	ENSPTXG00000011787	RASIP1 (ENSPTXG00000011790)	NTN5 (ENSPTXG00000011791)	ENSPTXG00000011798	CA11 (ENSPTXG00000011799)	SULT2B1 (ENSPTXG00000011800)	RPL18 (ENSPTXG00000011801)	SPHK2 (ENSPTXG00000011802)	DBP (ENSPTXG00000011803)	ISOC2 (ENSPTXG00000011805)	MYH14 (ENSPTXG00000011820)	ENSPTXG00000014659	EPN1 (ENSPTXG00000014661)
Mainland tiger snake	MODERN SPECIES	174	TMC4 (ENSNSUG00000019557)	ENSNSUG00000019558	PRPF31 (ENSNSUG00000019559)	TFPT (ENSNSUG00000019560)	NDUFA3 (ENSNSUG00000019561)	ENSNSUG00000019562	SPACA4 (ENSNSUG00000000005)	SHISA7 (ENSNSUG00000000022)	ENSNSUG00000000069	ENSNSUG00000000074	ENSNSUG00000000105	RPL28 (ENSNSUG00000000117)	ENSNSUG00000000125	ENSNSUG00000000151	TMEM238 (ENSNSUG00000000253)	ENSNSUG00000000271 ##22	ENSNSUG00000000301	ENSNSUG00000000311	RASIP1 (ENSNSUG00000000381)	NTN5 (ENSNSUG00000000395)	ENSNSUG00000000502	CA11 (ENSNSUG00000000503)	RPL18 (ENSNSUG00000000508)	ENSNSUG00000000511	ENSNSUG00000000515	DBP (ENSNSUG00000000518)	ISOC2 (ENSNSUG00000000521)	ENSNSUG00000000524	ENSNSUG00000000525	ENSNSUG00000000567	EPN1 (ENSNSUG00000000572)
Lizard	MODERN SPECIES	893	CNOT3 (ENSACAG00000016085)	PRPF31 (ENSACAG00000016061)	TFPT (ENSACAG00000016045)	NDUFA3 (ENSACAG00000016034)	ENSACAG00000045196	ENSACAG00000016022	SHISA7 (ENSACAG00000016011)	UBE2S (ENSACAG00000042596)	ENSACAG00000015987	ENSACAG00000040348	rpl28 (ENSACAG00000043464)	ENSACAG00000038195	ENSACAG00000015970	ENSACAG00000015945	ENSACAG00000040077	ENSACAG00000028515 ##22	ENSACAG00000045135	ENSACAG00000015896	ENSACAG00000026043	NTN5 (ENSACAG00000015858)	ENSACAG00000015857	ENSACAG00000015821	ENSACAG00000015735	RPL18 (ENSACAG00000015711)	ENSACAG00000015681	DBP (ENSACAG00000035258)	ENSACAG00000015636	ENSACAG00000015586	ENSACAG00000015573	ENSACAG00000033109	EPN1 (ENSACAG00000015534)
Laterata	ANCESTRAL SPECIES	36	ENSGT00510000048131	ENSGT00390000014743	ENSGT00550000075069	ENSGT00390000016605	ENSGT00390000004322	ENSGT01030000235700.a	ENSGT00940000161572	ENSGT00940000162254	ENSGT00940000157149	ENSGT00940000159441	ENSGT00950000185550	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00390000007165	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22	ENSGT00940000156204.wb	ENSGT00940000160072	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000161874	ENSGT00940000164900	ENSGT00940000162098	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136	ENSGT00390000006753.A	ENSGT00940000158808	ENSGT00940000165838	ENSGT00940000170710	ENSGT00940000160411
Argentine black and white tegu	MODERN SPECIES	38	CNOT3 (ENSSMRG00000003070)	PRPF31 (ENSSMRG00000003038)	TFPT (ENSSMRG00000003031)	NDUFA3 (ENSSMRG00000003028)	ENSSMRG00000003018	SPACA4 (ENSSMRG00000003006)	FAM83E (ENSSMRG00000003002)	SHISA7 (ENSSMRG00000002999)	RCVRN (ENSSMRG00000002996)	UBE2S (ENSSMRG00000002988)	ENSSMRG00000002984	ENSSMRG00000002976	ENSSMRG00000002958	ENSSMRG00000002950	TMEM238 (ENSSMRG00000002946)	ENSSMRG00000002901 ##22	ENSSMRG00000002894	ENSSMRG00000002868	RASIP1 (ENSSMRG00000002857)	ENSSMRG00000002855	NTN5 (ENSSMRG00000002671)	ENSSMRG00000002668	CA11 (ENSSMRG00000002661)	ENSSMRG00000002649	RPL18 (ENSSMRG00000002648)	SPHK2 (ENSSMRG00000002644)	DBP (ENSSMRG00000002635)	ISOC2 (ENSSMRG00000002626)	MYH14 (ENSSMRG00000002540)	ENSSMRG00000002535	ENSSMRG00000002529
tuatara	MODERN SPECIES	1528	ENSSPUG00000010120	H2AC7 (ENSSPUG00000010127)	ENSSPUG00000010130	ENSSPUG00000010176	ZNF581 (ENSSPUG00000010209)	U2AF2 (ENSSPUG00000010229)	EPN1 (ENSSPUG00000010256)	ENSSPUG00000010289	ISOC2 (ENSSPUG00000010332)	SHISA7 (ENSSPUG00000010345)	UBE2S (ENSSPUG00000010366)	RCVRN (ENSSPUG00000010379)	RPL28 (ENSSPUG00000010390)	ENSSPUG00000010413	TMEM238 (ENSSPUG00000010434)	ENSSPUG00000010444 ##22
Archelosauria	ANCESTRAL SPECIES	134														ENSGT00940000162720.b.b	ENSGT00390000007165	ENSGT00940000153496.b ##22
Cryptodira	ANCESTRAL SPECIES	161														ENSGT00940000162720.b.b	ENSGT00390000007165	ENSGT00940000153496.b ##22
Testudinoidea	ANCESTRAL SPECIES	50	ENSGT00390000013183	ENSGT00940000163608.a	ENSGT00530000064557	ENSGT00940000163198	ENSGT01100000263519.A.a.a.a.a.b.a.a	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136	ENSGT00940000161874	ENSGT00940000160072	ENSGT00940000162621	ENSGT00940000162319	ENSGT00940000162720.b.b	ENSGT00390000007165	ENSGT00940000153496.b ##22	ENSGT00390000006753.A	ENSGT00940000162254	ENSGT00940000157149	ENSGT00950000185550	ENSGT00940000159441	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00940000161572
Emydidae	ANCESTRAL SPECIES	152														ENSGT00940000162720.b.b	ENSGT00390000007165	ENSGT00940000153496.b ##22	ENSGT00390000006753.A	ENSGT00940000162254	ENSGT00940000157149	ENSGT00950000185550	ENSGT00940000159441
Three-toed box turtle	MODERN SPECIES	1679																ENSTMTG00000019999 ##22
painted turtle	MODERN SPECIES	1054	ENSCPBG00000004536	ZNF865 (ENSCPBG00000004542)	ENSCPBG00000004547	ENSCPBG00000004550	RPL18 (ENSCPBG00000004554)	SPHK2 (ENSCPBG00000004560)	DBP (ENSCPBG00000004568)	NTN5 (ENSCPBG00000004582)	ENSCPBG00000004597	RASIP1 (ENSCPBG00000004614)	ENSCPBG00000004631	ENSCPBG00000004648	TMEM238 (ENSCPBG00000004655)	ENSCPBG00000004661	IL11 (ENSCPBG00000004669)	ENSCPBG00000004674 ##22	ISOC2 (ENSCPBG00000004690)	SHISA7 (ENSCPBG00000004695)	UBE2S (ENSCPBG00000004699)	ENSCPBG00000004705	RCVRN (ENSCPBG00000004711)
Testudinidae	ANCESTRAL SPECIES	60				ENSGT00940000163198	ENSGT01100000263519.A.a.a.a.a.b.a.a	ENSGT00940000159269.g.b.a	ENSGT00390000012976	ENSGT00940000161197	ENSGT00940000162136	ENSGT00940000161874	ENSGT00940000160072	ENSGT00940000162621	ENSGT00940000162319	ENSGT00940000162720.b.b	ENSGT00390000007165	ENSGT00940000153496.b ##22	ENSGT00390000006753.A	ENSGT00940000162254	ENSGT00940000157149	ENSGT00950000185550	ENSGT00940000159441	ENSGT00390000008732.b	ENSGT01050000244814.b	ENSGT00940000161572	ENSGT00390000004322.f	ENSGT00390000016605	ENSGT00550000075069	ENSGT00390000014743	ENSGT00510000048131	ENSGT01030000234564.a.b	ENSGT00390000003912
Goode s thornscrub tortoise	MODERN SPECIES	138	ENSGEVG00005018761	ENSGEVG00005018808	ENSGEVG00005018818	ENSGEVG00005018835	ZNF579 (ENSGEVG00005018843)	ENSGEVG00005018853	RPL18 (ENSGEVG00005004955)	SPHK2 (ENSGEVG00005005002)	DBP (ENSGEVG00005005037)	NTN5 (ENSGEVG00005005104)	ENSGEVG00005005226	RASIP1 (ENSGEVG00005005282)	ENSGEVG00005005338	ENSGEVG00005005378	TMEM238 (ENSGEVG00005005395)	ENSGEVG00005005444 ##22	ISOC2 (ENSGEVG00005005617)	SHISA7 (ENSGEVG00005005650)	UBE2S (ENSGEVG00005005687)	ENSGEVG00005005704	RCVRN (ENSGEVG00005005730)	RPL28 (ENSGEVG00005005745)	ENSGEVG00005005771	FAM83E (ENSGEVG00005005839)	ENSGEVG00005005975	ENSGEVG00005006456	ENSGEVG00005006886	ENSGEVG00005007030	TFPT (ENSGEVG00005007047)	PRPF31 (ENSGEVG00005007073)	CNOT3 (ENSGEVG00005007120)
Coelacanth	MODERN SPECIES	2500														ENSLACG00000000523	rcvrn3 (ENSLACG00000002485)	ENSLACG00000003657 ##22
Actinopterygii	ANCESTRAL SPECIES	794														ENSGT01050000244814.b	ENSGT00940000162720.b.b	ENSGT00940000153496.b ##22
Neopterygii	ANCESTRAL SPECIES	732															ENSGT00940000159441	ENSGT00940000153496.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	4	ENSGT00390000007165.a	ENSGT00940000155965	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b	ENSGT00940000159441	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b	ENSGT00390000013183.d.b.a	ENSGT00390000013183.d.b.b	ENSGT00940000155556.d	ENSGT00390000014743.i
Clupeocephala	ANCESTRAL SPECIES		ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00940000159109.b	ENSGT00940000165399.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	4	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d.bb	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00980000199502	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	5	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731.l.a	ENSGT00390000009359.a.b.d.a	ENSGT00390000009359.a.b.d.b	ENSGT00390000017736.a	ENSGT00940000167905.e	ENSGT00940000167905.f	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654.w.b	ENSGT01050000244814.b.b.d	ENSGT00940000159441.k	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d.bb	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.h	ENSGT00390000007786.b.g.c	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373.e	ENSGT00940000167373.f.b	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608.e	ENSGT00940000163608.f
Salmoninae_a	ANCESTRAL SPECIES	91	ENSGT00390000017736.a	ENSGT00940000167905.e	ENSGT00940000167905.f.a	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A.d	ENSGT00390000006753.A.c	ENSGT00390000016654.w.b	ENSGT01050000244814.b.b.d.b	ENSGT00940000159441.k.a.b	ENSGT00940000153496.b.f ##22	ENSGT00940000162720.b.b.a.e	ENSGT00390000016654.w.a	ENSGT01050000244814.b.b.d.a	ENSGT00940000159441.k.a.a	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d.bb	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.g.a.c	ENSGT01050000244961.b.g.e	ENSGT00940000167373.f.a.a	ENSGT00940000159109.a.c	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608.f.b	ENSGT00940000175157
Salmo	ANCESTRAL SPECIES	195														ENSGT01050000244814.b.b.d.a	ENSGT00940000159441.k.a.a	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f.b	ENSGT00390000013183.d.b.a.f	ENSGT00940000155556.d.bb.g	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.g.a.c	ENSGT01050000244961.b.g.e	ENSGT00940000167373.f.b	ENSGT00940000159109.a.d	ENSGT00940000163128.b.f	ENSGT00940000154285.a.a.e.a	ENSGT00950000182979.a.b.b.b.a.d.e	ENSGT00940000163608.f.b
River trout	MODERN SPECIES	22	cox6b2 (ENSSTUG00000000256)	rasip1 (ENSSTUG00000000259)	ENSSTUG00000000264	ENSSTUG00000000274	nat14 (ENSSTUG00000000281)	aicda (ENSSTUG00000000286)	ENSSTUG00000000294	mfap5 (ENSSTUG00000000299)	sbk3 (ENSSTUG00000000300)	epn1a (ENSSTUG00000000310)	ENSSTUG00000000320	isoc2 (ENSSTUG00000000323)	atg12 (ENSSTUG00000000326)	ENSSTUG00000000329	rcvrn2 (ENSSTUG00000000332)	ENSSTUG00000000337 ##22	TMEM238 (ENSSTUG00000000344)	CCDC106 (ENSSTUG00000000347)	u2af2a (ENSSTUG00000000359)	CACNG6 (ENSSTUG00000000368)	CACNG8 (ENSSTUG00000000370)	pitpnc1b (ENSSTUG00000000377)	ENSSTUG00000000383	ENSSTUG00000000423	ENSSTUG00000000431	ntd5 (ENSSTUG00000000432)	ENSSTUG00000000439	ENSSTUG00000000444	ENSSTUG00000000452	ube2s (ENSSTUG00000000457)	josd2 (ENSSTUG00000000462)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000002063	rasip1 (ENSSSAG00000007946)	ENSSSAG00000007382	cox6b2 (ENSSSAG00000007368)	ENSSSAG00000102357	ENSSSAG00000007324	nat14 (ENSSSAG00000098784)	aicda (ENSSSAG00000051321)	sbk3 (ENSSSAG00000096752)	necp1 (ENSSSAG00000095911)	epn1 (ENSSSAG00000002122)	ENSSSAG00000007255	atg12 (ENSSSAG00000122233)	ENSSSAG00000106910	rcvrn2 (ENSSSAG00000007276)	ENSSSAG00000007199 ##22	u2af2a (ENSSSAG00000121298)	ENSSSAG00000008299	CACNG8 (ENSSSAG00000117995)	ENSSSAG00000055217	ENSSSAG00000102323	ENSSSAG00000087639	pitpnc1b (ENSSSAG00000005153)	ENSSSAG00000121689	ENSSSAG00000005128	sal (ENSSSAG00000005097)	ENSSSAG00000098609	ENSSSAG00000099663	ENSSSAG00000005074	ENSSSAG00000088104	ENSSSAG00000005050
Oncorhynchus	ANCESTRAL SPECIES	62	ENSGT00940000160072.p	ENSGT00390000007165.a.f.a	ENSGT00940000155965.b.f.a.b	ENSGT01000000216377.a.a	ENSGT01000000216377.b	ENSGT00940000158731.l.a.b	ENSGT00390000009359.a.b.d.b	ENSGT00390000017736.a	ENSGT00940000167905.e	ENSGT00940000160411.i.d	ENSGT00940000166343.d	ENSGT00390000006753.A.d	ENSGT00390000016654.w.a	ENSGT01050000244814.b.b.d.a	ENSGT00940000159441.k.a.a	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f	ENSGT00390000013183.d.b.a.c	ENSGT00940000155556.d.bb	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.g.a.c	ENSGT01050000244893.c.b.a.g.a.d	ENSGT01050000244961.b.g.e	ENSGT00940000167373.f.a.a	ENSGT00940000159109.a.c.a	ENSGT00940000163128.b.h.b	ENSGT00940000154285.a.a.e.a.c	ENSGT00950000182979.a.b.b.b.a.d.g	ENSGT00940000163608.f.a	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b.c.a.a
Rainbow trout	MODERN SPECIES	11	cox6b2 (ENSOMYG00000003404)	rasip1 (ENSOMYG00000003336)	il-11 (ENSOMYG00000074097)	ENSOMYG00000003250	nat14 (ENSOMYG00000058887)	aicda (ENSOMYG00000075369)	ENSOMYG00000003228	sbk3 (ENSOMYG00000003167)	ENSOMYG00000075640	ENSOMYG00000003012	ENSOMYG00000002899	atg12 (ENSOMYG00000002850)	ENSOMYG00000002814	ENSOMYG00000061256	rcvrn2 (ENSOMYG00000002809)	ENSOMYG00000002794 ##22	ENSOMYG00000002775	ENSOMYG00000002766	u2af2a (ENSOMYG00000002726)	ENSOMYG00000072328	CACNG8 (ENSOMYG00000002672)	ENSOMYG00000002655	ENSOMYG00000050358	ENSOMYG00000000201	ENSOMYG00000070529	ENSOMYG00000064191	pitpnc1b (ENSOMYG00000002818)	ENSOMYG00000049466	stl2 (ENSOMYG00000074060)	stl2 (ENSOMYG00000002934)	ENSOMYG00000002788
Oncorhynchus_a	ANCESTRAL SPECIES	82	ENSGT00390000007165.a.f.b	ENSGT01000000216377.b	ENSGT00940000158731.l.a.b	ENSGT00390000009359.a.b.d.b	ENSGT00390000017736.a.e	ENSGT00940000167905.e	ENSGT00940000160411.i.d	ENSGT00940000166343.d	ENSGT00390000006753.A.d	ENSGT00390000016654.w.a	ENSGT01050000244814.b.b.d.b	ENSGT00940000159441.k.a.b	ENSGT00940000153496.b.f ##22	ENSGT01050000244814.b.b.d.a	ENSGT00940000159441.k.a.a	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f	ENSGT00390000013183.d.b.a.c	ENSGT00940000155556.d.bb.c	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.g.a.c	ENSGT01050000244893.c.b.a.g.a.d	ENSGT01050000244961.b.g.e	ENSGT00940000167373.f.a.a	ENSGT00940000159109.a.c.a	ENSGT00940000163128.b.h.b	ENSGT00940000154285.a.a.e.a.c.a	ENSGT00950000182979.a.b.b.b.a.d.g	ENSGT00940000163608.f.a	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b.c.a.a
Coho salmon	MODERN SPECIES	4	rasip1 (ENSOKIG00005008156)	ENSOKIG00005008225	ENSOKIG00005008234	ENSOKIG00005008257	nat14 (ENSOKIG00005008267)	aicda (ENSOKIG00005008281)	ENSOKIG00005008297	mfap5 (ENSOKIG00005008321)	sbk3 (ENSOKIG00005008339)	epn1a (ENSOKIG00005008351)	ENSOKIG00005008383	isoc2 (ENSOKIG00005008394)	atg12 (ENSOKIG00005008425)	ENSOKIG00005008455	rcvrn2 (ENSOKIG00005008473)	ENSOKIG00005008500 ##22	CCDC106 (ENSOKIG00005008551)	u2af2a (ENSOKIG00005008578)	CACNG6 (ENSOKIG00005008600)	ENSOKIG00005008609	CACNG8 (ENSOKIG00005008612)	CACNG7 (ENSOKIG00005008652)	ENSOKIG00005008803	ENSOKIG00005010709	pitpnc1b (ENSOKIG00005010715)	ENSOKIG00005010725	ENSOKIG00005010766	ENSOKIG00005010812	ENSOKIG00005010816	ENSOKIG00005010829	ntd5 (ENSOKIG00005010837)
Huchen	MODERN SPECIES	2183					ENSHHUG00000019045	ENSHHUG00000019043	nat14 (ENSHHUG00000018976)	aicda (ENSHHUG00000018923)	ENSHHUG00000018906	sbk3 (ENSHHUG00000018863)	epn1a (ENSHHUG00000018826)	ENSHHUG00000018819	atg12 (ENSHHUG00000018813)	ENSHHUG00000018799	rcvrn2 (ENSHHUG00000018795)	ENSHHUG00000018776 ##22	TMEM238 (ENSHHUG00000018773)	ccdc106a (ENSHHUG00000018766)	u2af2a (ENSHHUG00000018489)	CACNG6 (ENSHHUG00000018479)	ENSHHUG00000018473
Salmoninae	ANCESTRAL SPECIES	1598																ENSGT00940000153496.b.f ##22	ENSGT00940000162720.b.b.a.e
Huchen	MODERN SPECIES	1954		ENSHHUG00000025318	ENSHHUG00000025315	nat14 (ENSHHUG00000025302)	aicda (ENSHHUG00000025294)	ENSHHUG00000025283	mfap5 (ENSHHUG00000025275)	sbk3 (ENSHHUG00000025272)	epn1a (ENSHHUG00000025259)	ENSHHUG00000025254	isoc2 (ENSHHUG00000025244)	atg12 (ENSHHUG00000025230)	ENSHHUG00000025222	rcvrn2 (ENSHHUG00000025214)	ENSHHUG00000025189	ENSHHUG00000025176 ##22	TMEM238 (ENSHHUG00000025167)	CCDC106 (ENSHHUG00000025145)	u2af2a (ENSHHUG00000024985)	CACNG6 (ENSHHUG00000024975)	CACNG8 (ENSHHUG00000024967)
Salmoninae_a	ANCESTRAL SPECIES	91	ENSGT00390000007165.a.f.b	ENSGT00940000155965.b.f	ENSGT00950000182932.A.b.b	ENSGT00940000158731.l.a	ENSGT00390000009359.a.b.d.b	ENSGT00390000017736.a	ENSGT00940000167905.e	ENSGT00940000167905.f.a	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A.d	ENSGT00390000006753.A.c	ENSGT00390000016654.w.b	ENSGT01050000244814.b.b.d.b	ENSGT00940000159441.k.a.b	ENSGT00940000153496.b.f ##22	ENSGT00940000162720.b.b.a.e	ENSGT00390000016654.w.a	ENSGT01050000244814.b.b.d.a	ENSGT00940000159441.k.a.a	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d.bb	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.g.a.c	ENSGT01050000244961.b.g.e	ENSGT00940000167373.f.a.a	ENSGT00940000159109.a.c	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d
Oncorhynchus	ANCESTRAL SPECIES	94											ENSGT00940000166343.c	ENSGT00390000006753.A.c	ENSGT00390000016654.w.b	ENSGT01050000244814.b.b.d.b	ENSGT00940000159441.k.a.b	ENSGT00940000153496.b.f ##22	ENSGT00940000162720.b.b.a.e	ENSGT00390000013183.d.b.a.d	ENSGT00390000007786.b.g.c	ENSGT01050000244893.c.b.a.h	ENSGT01050000244961.b.g.f	ENSGT00940000167373.e	ENSGT00940000159109.a.c.b	ENSGT00940000163128.b.h.a	ENSGT00950000182979.a.b.b.b.a.d.h	ENSGT00940000163608.f.b	ENSGT00940000175157.a	ENSGT00940000165399.a.b.c.a.b	ENSGT00530000064557.a.e	ENSGT00940000162254.b.f	ENSGT00940000157149.z
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000026849	rasip1 (ENSOMYG00000026854)	ENSOMYG00000026824	ENSOMYG00000026805	ENSOMYG00000026791	aicda (ENSOMYG00000026715)	ENSOMYG00000026645	mfap5 (ENSOMYG00000069901)	sbk3 (ENSOMYG00000058164)	epn1a (ENSOMYG00000060896)	ENSOMYG00000050524	isoc2 (ENSOMYG00000002863)	atg12 (ENSOMYG00000063568)	ENSOMYG00000026597	rcvrn2 (ENSOMYG00000026587)	ENSOMYG00000026552 ##22	ENSOMYG00000026531	ENSOMYG00000026518	u2af2a (ENSOMYG00000026511)	ENSOMYG00000026489	CACNG8 (ENSOMYG00000048250)	ENSOMYG00000065287	ENSOMYG00000075741	ENSOMYG00000026460	ENSOMYG00000027607	ENSOMYG00000068524	pitpnc1b (ENSOMYG00000002991)	ENSOMYG00000063795	ENSOMYG00000048945	ENSOMYG00000002620	ENSOMYG00000002603
Oncorhynchus_a	ANCESTRAL SPECIES	82	ENSGT00940000166381.h	ENSGT00940000166444.c.b	ENSGT00940000160072.p	ENSGT00390000007165.a.f.b	ENSGT01000000216377.b	ENSGT00940000158731.l.a.b	ENSGT00390000009359.a.b.d.b	ENSGT00390000017736.a.e	ENSGT00940000167905.e	ENSGT00940000160411.i.d	ENSGT00940000166343.d	ENSGT00390000006753.A.d	ENSGT00390000016654.w.a	ENSGT01050000244814.b.b.d.b	ENSGT00940000159441.k.a.b	ENSGT00940000153496.b.f ##22	ENSGT01050000244814.b.b.d.a	ENSGT00940000159441.k.a.a	ENSGT00940000153496.b.e ##22	ENSGT00940000162720.b.b.a.f	ENSGT00390000013183.d.b.a.c	ENSGT00940000155556.d.bb.c	ENSGT00390000007786.b.g.d	ENSGT01050000244893.c.b.a.g.a.c	ENSGT01050000244893.c.b.a.g.a.d	ENSGT01050000244961.b.g.e	ENSGT00940000167373.f.a.a	ENSGT00940000159109.a.c.a	ENSGT00940000163128.b.h.b	ENSGT00940000154285.a.a.e.a.c.a	ENSGT00950000182979.a.b.b.b.a.d.g
Coho salmon	MODERN SPECIES	11	rasip1 (ENSOKIG00005017415)	ENSOKIG00005017393	ENSOKIG00005017386	ENSOKIG00005017361	ENSOKIG00005017351	aicda (ENSOKIG00005017335)	ENSOKIG00005017318	mfap5 (ENSOKIG00005017310)	sbk3 (ENSOKIG00005017304)	epn1a (ENSOKIG00005017260)	ENSOKIG00005017249	isoc2 (ENSOKIG00005017240)	atg12 (ENSOKIG00005017237)	ENSOKIG00005017231	rcvrn2 (ENSOKIG00005017227)	ENSOKIG00005017186 ##22	TMEM238 (ENSOKIG00005017182)	CCDC106 (ENSOKIG00005017164)	u2af2a (ENSOKIG00005017114)	CACNG6 (ENSOKIG00005017106)	CACNG8 (ENSOKIG00005017091)	ENSOKIG00005017097	CACNG7 (ENSOKIG00005017080)	ENSOKIG00005017003	pitpnc1b (ENSOKIG00005016970)	ENSOKIG00005016957	ENSOKIG00005016948	ENSOKIG00005016930	ENSOKIG00005016923	ENSOKIG00005016916	ENSOKIG00005016912
Salmo	ANCESTRAL SPECIES	160					ENSGT00940000167905.f.b	ENSGT00940000160411.i.f	ENSGT00940000166343.f	ENSGT00390000006753.A.d	ENSGT00390000006753.A.c	ENSGT00390000016654.w.b	ENSGT01050000244814.b.b.d.b	ENSGT00940000159441.k.b	ENSGT00390000016654.x	ENSGT01050000244814.b.b.c	ENSGT00940000159441.k.a.b	ENSGT00940000153496.b.f ##22	ENSGT00940000162720.b.b.a.f.a	ENSGT00390000013183.d.b.a.e	ENSGT00940000155556.d.bb.h	ENSGT00390000007786.b.g.c	ENSGT01050000244893.c.b.a.g.a.d	ENSGT01050000244961.b.g.f	ENSGT00940000159109.a.c	ENSGT00940000163128.b.e
River trout	MODERN SPECIES	30	ENSSTUG00000016470	cox6b2 (ENSSTUG00000016441)	rasip1 (ENSSTUG00000016431)	ENSSTUG00000016387	ENSSTUG00000016377	nat14 (ENSSTUG00000016364)	aicda (ENSSTUG00000016342)	ENSSTUG00000016326	mfap5 (ENSSTUG00000016317)	epn1a (ENSSTUG00000016300)	ENSSTUG00000016294	isoc2 (ENSSTUG00000016283)	atg12 (ENSSTUG00000016273)	ENSSTUG00000016262	rcvrn2 (ENSSTUG00000016253)	ENSSTUG00000016242 ##22	TMEM238 (ENSSTUG00000016234)	ccdc106a (ENSSTUG00000016226)	u2af2a (ENSSTUG00000016153)	CACNG6 (ENSSTUG00000016127)	CACNG8 (ENSSTUG00000016109)	CACNG7 (ENSSTUG00000016093)	ENSSTUG00000016053	pitpnc1b (ENSSTUG00000016039)	ENSSTUG00000016033	ENSSTUG00000016030	ENSSTUG00000015999	ENSSTUG00000015976	ENSSTUG00000015972	ntd5 (ENSSTUG00000015958)	ENSSTUG00000015952
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000007889	cox6b2 (ENSSSAG00000007935)	rasip1 (ENSSSAG00000007341)	ENSSSAG00000120112	ENSSSAG00000119461	aicda (ENSSSAG00000007974)	ENSSSAG00000089006	mfap5 (ENSSSAG00000120651)	sbk3 (ENSSSAG00000007988)	epn1a (ENSSSAG00000007997)	ENSSSAG00000008018	isoc2 (ENSSSAG00000084362)	atg12 (ENSSSAG00000007267)	ENSSSAG00000098594	rcvrn2 (ENSSSAG00000103142)	ENSSSAG00000008077 ##22	ENSSSAG00000104772	ENSSSAG00000008113	u2af2a (ENSSSAG00000008140)	ENSSSAG00000119865	ENSSSAG00000004674	CACNG8 (ENSSSAG00000119122)	ENSSSAG00000005522	ENSSSAG00000053175	ENSSSAG00000051341	pitpnc1b (ENSSSAG00000121759)	ENSSSAG00000008331	ENSSSAG00000005080	ENSSSAG00000081794	ntd5 (ENSSSAG00000005061)	ENSSSAG00000005057
Northern pike	MODERN SPECIES	19	COX6B1 (ENSELUG00000016407)	rasip1 (ENSELUG00000016372)	ENSELUG00000016350	ENSELUG00000016337	nat14 (ENSELUG00000016312)	aicda (ENSELUG00000016293)	ENSELUG00000016279	mfap5 (ENSELUG00000016264)	sbk3 (ENSELUG00000016232)	epn1a (ENSELUG00000016198)	ENSELUG00000016151	isoc2 (ENSELUG00000016090)	atg12 (ENSELUG00000016045)	ENSELUG00000016009	rcvrn2 (ENSELUG00000015956)	ENSELUG00000015939 ##22	TMEM238 (ENSELUG00000015906)	ccdc106a (ENSELUG00000015899)	u2af2a (ENSELUG00000015850)	CACNG6 (ENSELUG00000015801)	CACNG8 (ENSELUG00000001575)	CACNG7 (ENSELUG00000015707)	ENSELUG00000015675	ENSELUG00000015612	pitpnc1b (ENSELUG00000031390)	ENSELUG00000015494	ENSELUG00000015468	ntd5 (ENSELUG00000015442)	ENSELUG00000015420	ENSELUG00000015406	ENSELUG00000015398
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00390000006753.A	ENSGT00940000166343	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Tiger tail seahorse	MODERN SPECIES	164	rasip1 (ENSHCOG00000018828)	ENSHCOG00000018846	ENSHCOG00000018864	ENSHCOG00000018871	aicda (ENSHCOG00000018886)	NECAP1 (ENSHCOG00000019060)	mfap5 (ENSHCOG00000019080)	sbk3 (ENSHCOG00000019101)	epn1a (ENSHCOG00000019115)	ENSHCOG00000019146	isoc2 (ENSHCOG00000019154)	atg12 (ENSHCOG00000019183)	ENSHCOG00000019210	rcvrn2 (ENSHCOG00000019219)	ENSHCOG00000019233	ENSHCOG00000019295 ##22	TMEM238 (ENSHCOG00000019310)	ccdc106a (ENSHCOG00000019330)	u2af2a (ENSHCOG00000019367)	CACNG6 (ENSHCOG00000019378)	CACNG8 (ENSHCOG00000000760)	CACNG7 (ENSHCOG00000019416)	ENSHCOG00000020438	ENSHCOG00000020495	pitpnc1b (ENSHCOG00000020537)	ENSHCOG00000020546	ENSHCOG00000020549	ntd5 (ENSHCOG00000020557)	ENSHCOG00000020560	ENSHCOG00000020567	ENSHCOG00000020580
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Tetraodontidae	ANCESTRAL SPECIES	25	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Fugu	MODERN SPECIES	19	rasip1 (ENSTRUG00000007545)	il-11a (ENSTRUG00000027860)	ENSTRUG00000007250	nat14 (ENSTRUG00000007241)	aicda (ENSTRUG00000007079)	ENSTRUG00000006890	mfap5 (ENSTRUG00000024609)	sbk3 (ENSTRUG00000006836)	epn1a (ENSTRUG00000006530)	ENSTRUG00000006168	isoc2 (ENSTRUG00000022241)	atg12 (ENSTRUG00000030450)	ENSTRUG00000028349	rcvrn2 (ENSTRUG00000005971)	ENSTRUG00000030608	ENSTRUG00000019889 ##22	TMEM238 (ENSTRUG00000025491)	ENSTRUG00000005838	u2af2a (ENSTRUG00000005514)	CACNG6 (ENSTRUG00000031204)	CACNG8 (ENSTRUG00000027379)	CACNG7 (ENSTRUG00000004672)	ENSTRUG00000032533	ENSTRUG00000020717	pitpnc1b (ENSTRUG00000004387)	ENSTRUG00000019579	ENSTRUG00000031857	ntd5 (ENSTRUG00000004338)	ENSTRUG00000020547	ENSTRUG00000020218	ENSTRUG00000024727
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Ballan wrasse	MODERN SPECIES	264	rasip1 (ENSLBEG00000015106)	ENSLBEG00000015240	ENSLBEG00000015264	nat14 (ENSLBEG00000015304)	aicda (ENSLBEG00000015351)	ENSLBEG00000015471	mfap5 (ENSLBEG00000015616)	sbk3 (ENSLBEG00000015643)	epn1a (ENSLBEG00000015714)	ENSLBEG00000015806	atg12 (ENSLBEG00000015868)	isoc2 (ENSLBEG00000015947)	ENSLBEG00000016001	rcvrn2 (ENSLBEG00000016020)	ENSLBEG00000016031	ENSLBEG00000016050 ##22	TMEM238 (ENSLBEG00000016094)	ccdc106a (ENSLBEG00000016111)	u2af2a (ENSLBEG00000016162)	CACNG6 (ENSLBEG00000016235)	CACNG8 (ENSLBEG00000016268)	CACNG7 (ENSLBEG00000016290)	ENSLBEG00000016325	ENSLBEG00000016419	pitpnc1b (ENSLBEG00000016622)	ENSLBEG00000016654	ENSLBEG00000016702	ntd5 (ENSLBEG00000016723)	ENSLBEG00000016761	ENSLBEG00000016791	ENSLBEG00000016803
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00980000203439	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
European seabass	MODERN SPECIES	6	ENSDLAG00005035048	ENSDLAG00005033098	rasip1 (ENSDLAG00005001181)	ENSDLAG00005029539	ENSDLAG00005033089	nat14 (ENSDLAG00005001334)	aicda (ENSDLAG00005031230)	mfap5 (ENSDLAG00005001357)	sbk3 (ENSDLAG00005001363)	epn1a (ENSDLAG00005028855)	ENSDLAG00005001437	ENSDLAG00005032481	isoc2 (ENSDLAG00005001450)	ENSDLAG00005001474	ENSDLAG00005001486	ENSDLAG00005001498 ##22	ENSDLAG00005027319	ENSDLAG00005001596	ENSDLAG00005001576	CACNG8 (ENSDLAG00005001584)	ENSDLAG00005001644	ENSDLAG00005001954	pitpnc1b (ENSDLAG00005001974)	ENSDLAG00005001980	ENSDLAG00005001972	ENSDLAG00005001994	ENSDLAG00005001999	ENSDLAG00005034699	josd2 (ENSDLAG00005033719)	ENSDLAG00005002020	ENSDLAG00005002027
Large yellow croaker	MODERN SPECIES	484	rasip1 (ENSLCRG00005009362)	ENSLCRG00005009371	ENSLCRG00005009372	nat14 (ENSLCRG00005009377)	aicda (ENSLCRG00005009381)	ENSLCRG00005009383	mfap5 (ENSLCRG00005009401)	sbk3 (ENSLCRG00005009431)	epn1a (ENSLCRG00005009457)	ENSLCRG00005009498	isoc2 (ENSLCRG00005009492)	ENSLCRG00005009515	ENSLCRG00005009517	RCVRN (ENSLCRG00005009528)	ENSLCRG00005009534	ENSLCRG00005009540 ##22	TMEM238 (ENSLCRG00005009561)	ccdc106a (ENSLCRG00005009577)	u2af2a (ENSLCRG00005009655)	CACNG8 (ENSLCRG00005010159)	CACNG7 (ENSLCRG00005010167)	ENSLCRG00005010388	pitpnc1b (ENSLCRG00005012517)	ENSLCRG00005012547	ENSLCRG00005012569	ntd5 (ENSLCRG00005012577)	ENSLCRG00005012582	ENSLCRG00005012584	ENSLCRG00005012590	ube2s (ENSLCRG00005012597)	josd2 (ENSLCRG00005012603)
Gilthead seabream	MODERN SPECIES	8	rasip1 (ENSSAUG00010014832)	ENSSAUG00010014831	ENSSAUG00010014828	nat14 (ENSSAUG00010014827)	aicda (ENSSAUG00010014826)	ENSSAUG00010014824	mfap5 (ENSSAUG00010014823)	sbk3 (ENSSAUG00010014822)	epn1a (ENSSAUG00010014821)	ENSSAUG00010014818	isoc2 (ENSSAUG00010014813)	atg12 (ENSSAUG00010014812)	ENSSAUG00010023779	rcvrn2 (ENSSAUG00010023777)	ENSSAUG00010023775	ENSSAUG00010023774 ##22	TMEM238 (ENSSAUG00010023771)	ccdc106a (ENSSAUG00010023770)	u2af2a (ENSSAUG00010023762)	CACNG6 (ENSSAUG00010023756)	CACNG8 (ENSSAUG00010023753)	CACNG7 (ENSSAUG00010023749)	ENSSAUG00010021449	GRIN2D (ENSSAUG00010021403)	pitpnc1b (ENSSAUG00010021395)	ENSSAUG00010021393	ENSSAUG00010021392	ntd5 (ENSSAUG00010021389)	ENSSAUG00010021361	ENSSAUG00010021359	ENSSAUG00010021358
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.h	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a
Lumpfish	MODERN SPECIES	7	rasip1 (ENSCLMG00005021192)	ENSCLMG00005021189	ENSCLMG00005021186	nat14 (ENSCLMG00005021181)	aicda (ENSCLMG00005021179)	ENSCLMG00005021157	mfap5 (ENSCLMG00005021155)	sbk3 (ENSCLMG00005021154)	epn1a (ENSCLMG00005021150)	ENSCLMG00005021148	isoc2 (ENSCLMG00005021147)	atg12 (ENSCLMG00005021145)	ENSCLMG00005021144	rcvrn2 (ENSCLMG00005021143)	ENSCLMG00005021141	ENSCLMG00005021140 ##22	ENSCLMG00005021139	ccdc106a (ENSCLMG00005021138)	u2af2a (ENSCLMG00005021113)	CACNG6 (ENSCLMG00005021112)	CACNG8 (ENSCLMG00005021111)	CACNG7 (ENSCLMG00005021110)	ENSCLMG00005021001	GRIN2D (ENSCLMG00005020999)	pitpnc1b (ENSCLMG00005020980)	ENSCLMG00005020973	ENSCLMG00005020968	ntd5 (ENSCLMG00005020967)	ENSCLMG00005020964	ENSCLMG00005020962	ENSCLMG00005020961
Stickleback	MODERN SPECIES	19	ENSGACG00000010474	ENSGACG00000010483	cox6b2 (ENSGACG00000010502)	ENSGACG00000010503	rasip1 (ENSGACG00000010504)	ENSGACG00000010508	ZNF628 (ENSGACG00000010515)	nat14 (ENSGACG00000010519)	aicda (ENSGACG00000010521)	ENSGACG00000010530	epn1a (ENSGACG00000010556)	ENSGACG00000010572	isoc2 (ENSGACG00000010580)	atg12 (ENSGACG00000010597)	RCVRN (ENSGACG00000010601)	ENSGACG00000010614 ##22	ccdc106a (ENSGACG00000010622)	u2af2a (ENSGACG00000010632)	CACNG8 (ENSGACG00000010639)	CACNG7 (ENSGACG00000010641)	ENSGACG00000010646	GRIN2D (ENSGACG00000010650)	pitpnc1b (ENSGACG00000010654)	ENSGACG00000010659	ntd5 (ENSGACG00000010664)	ENSGACG00000010676	ENSGACG00000010681	ENSGACG00000010683	ube2s (ENSGACG00000010686)	josd2 (ENSGACG00000010704)	TTYH1 (ENSGACG00000010708)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00940000169205	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b	ENSGT00940000157149
Channel bull blenny	MODERN SPECIES	7	rasip1 (ENSCGOG00000014597)	ENSCGOG00000014604	ENSCGOG00000014605	nat14 (ENSCGOG00000014606)	aicda (ENSCGOG00000014607)	ENSCGOG00000014609	ENSCGOG00000014610	sbk3 (ENSCGOG00000014612)	epn1a (ENSCGOG00000014614)	ENSCGOG00000014617	isoc2 (ENSCGOG00000014619)	atg12 (ENSCGOG00000014620)	ENSCGOG00000014622	rcvrn2 (ENSCGOG00000014625)	ENSCGOG00000014626	ENSCGOG00000014629 ##22	ENSCGOG00000014630	ccdc106a (ENSCGOG00000014631)	u2af2a (ENSCGOG00000014635)	CACNG6 (ENSCGOG00000014772)	CACNG8 (ENSCGOG00000014775)	CACNG7 (ENSCGOG00000014777)	ENSCGOG00000014835	ENSCGOG00000017415	pitpnc1b (ENSCGOG00000017433)	ENSCGOG00000017434	ntd5 (ENSCGOG00000017435)	ENSCGOG00000017439	ENSCGOG00000017442	ENSCGOG00000017443	ube2s (ENSCGOG00000017445)
Pike perch	MODERN SPECIES	15	rasip1 (ENSSLUG00000017304)	ENSSLUG00000017294	ENSSLUG00000017287	nat14 (ENSSLUG00000017286)	aicda (ENSSLUG00000017278)	ENSSLUG00000017273	mfap5 (ENSSLUG00000017267)	sbk3 (ENSSLUG00000017261)	epn1a (ENSSLUG00000017254)	ENSSLUG00000017245	isoc2 (ENSSLUG00000017237)	atg12 (ENSSLUG00000017229)	ENSSLUG00000017222	rcvrn2 (ENSSLUG00000017217)	ENSSLUG00000017204	ENSSLUG00000017197 ##22	ENSSLUG00000017191	ccdc106a (ENSSLUG00000017184)	u2af2a (ENSSLUG00000017156)	CACNG6 (ENSSLUG00000017147)	CACNG8 (ENSSLUG00000017140)	CACNG7 (ENSSLUG00000017132)	ENSSLUG00000016949	GRIN2D (ENSSLUG00000016908)	pitpnc1b (ENSSLUG00000016896)	ENSSLUG00000016893	ntd5 (ENSSLUG00000016888)	ENSSLUG00000016882	ENSSLUG00000016874	ENSSLUG00000016862	ube2s (ENSSLUG00000016854)
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Climbing perch	MODERN SPECIES	7	rasip1 (ENSATEG00000021966)	ENSATEG00000021982	ENSATEG00000021990	nat14 (ENSATEG00000022010)	aicda (ENSATEG00000022035)	ENSATEG00000025424	mfap5 (ENSATEG00000027731)	sbk3 (ENSATEG00000022124)	epn1a (ENSATEG00000022139)	isoc2 (ENSATEG00000025405)	ENSATEG00000022187	atg12 (ENSATEG00000022240)	ENSATEG00000022255	rcvrn2 (ENSATEG00000022263)	ENSATEG00000022272	ENSATEG00000022288 ##22	ENSATEG00000022309	ENSATEG00000022317	u2af2a (ENSATEG00000022332)	ENSATEG00000022354	CACNG8 (ENSATEG00000025694)	ENSATEG00000022380	ENSATEG00000022390	ENSATEG00000022434	pitpnc1b (ENSATEG00000022452)	ENSATEG00000028094	ENSATEG00000022501	ntd5 (ENSATEG00000022507)	ENSATEG00000022519	ENSATEG00000022536	ube2s (ENSATEG00000022544)
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000014244	ENSBSLG00000014256	nat14 (ENSBSLG00000014270)	aicda (ENSBSLG00000014282)	ENSBSLG00000014297	mfap5 (ENSBSLG00000014326)	sbk3 (ENSBSLG00000014344)	epn1a (ENSBSLG00000014357)	ENSBSLG00000014417	isoc2 (ENSBSLG00000014445)	atg12 (ENSBSLG00000014482)	CACNG8 (ENSBSLG00000014488)	ENSBSLG00000014500	rcvrn2 (ENSBSLG00000014507)	ENSBSLG00000014515	ENSBSLG00000014519 ##22	ccdc106a (ENSBSLG00000014551)	u2af2a (ENSBSLG00000014564)	CACNG6 (ENSBSLG00000014574)	CACNG7 (ENSBSLG00000014612)	ENSBSLG00000014635	ENSBSLG00000016280	ENSBSLG00000016686	pitpnc1b (ENSBSLG00000016960)	ENSBSLG00000017030	ENSBSLG00000017082	ntd5 (ENSBSLG00000017101)	ENSBSLG00000017177	ENSBSLG00000017234	ENSBSLG00000017241	ube2s (ENSBSLG00000017246)
Zig-zag eel	MODERN SPECIES	7	cox6b2 (ENSMAMG00000027053)	rasip1 (ENSMAMG00000020051)	ENSMAMG00000020048	ENSMAMG00000028502	nat14 (ENSMAMG00000020033)	aicda (ENSMAMG00000020032)	ENSMAMG00000025824	mfap5 (ENSMAMG00000020024)	sbk3 (ENSMAMG00000020013)	epn1a (ENSMAMG00000019999)	ENSMAMG00000019986	isoc2 (ENSMAMG00000019977)	atg12 (ENSMAMG00000024583)	ENSMAMG00000019953	rcvrn2 (ENSMAMG00000019892)	ENSMAMG00000025744 ##22	ENSMAMG00000019887	ENSMAMG00000019868	u2af2a (ENSMAMG00000019817)	ENSMAMG00000019808	CACNG8 (ENSMAMG00000019791)	ENSMAMG00000019779	ENSMAMG00000019735	ENSMAMG00000019712	pitpnc1b (ENSMAMG00000019686)	ENSMAMG00000019677	ENSMAMG00000019666	ntd5 (ENSMAMG00000019647)	ENSMAMG00000019637	ENSMAMG00000019633	ENSMAMG00000019627
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.b	ENSGT00940000165399.a.b	ENSGT00530000064557.a
Barramundi perch	MODERN SPECIES	234	rasip1 (ENSLCAG00010010060)	ENSLCAG00010010054	ENSLCAG00010010043	nat14 (ENSLCAG00010010037)	aicda (ENSLCAG00010010035)	ENSLCAG00010010028	mfap5 (ENSLCAG00010010026)	sbk3 (ENSLCAG00010010024)	epn1a (ENSLCAG00010010010)	ENSLCAG00010009995	isoc2 (ENSLCAG00010009990)	ENSLCAG00010009986	ENSLCAG00010009985	RCVRN (ENSLCAG00010009983)	ENSLCAG00010009979	ENSLCAG00010009971 ##22	TMEM238 (ENSLCAG00010009970)	ccdc106a (ENSLCAG00010009967)	u2af2a (ENSLCAG00010009955)	CACNG6 (ENSLCAG00010009947)	CACNG8 (ENSLCAG00010009944)	CACNG7 (ENSLCAG00010009941)	GRIN2D (ENSLCAG00010009377)	pitpnc1b (ENSLCAG00010009242)	ENSLCAG00010009237	ENSLCAG00010009231	ntd5 (ENSLCAG00010009228)	ENSLCAG00010009225	ENSLCAG00010009223	ENSLCAG00010009220	ube2s (ENSLCAG00010009216)
Seriola	ANCESTRAL SPECIES	28	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Greater amberjack	MODERN SPECIES	88	rasip1 (ENSSDUG00000010082)	ENSSDUG00000010062	ENSSDUG00000009977	nat14 (ENSSDUG00000009960)	aicda (ENSSDUG00000009894)	NECAP1 (ENSSDUG00000009877)	mfap5 (ENSSDUG00000009862)	sbk3 (ENSSDUG00000009837)	epn1a (ENSSDUG00000009797)	ENSSDUG00000009725	isoc2 (ENSSDUG00000009699)	atg12 (ENSSDUG00000009689)	ENSSDUG00000009671	rcvrn2 (ENSSDUG00000009620)	ENSSDUG00000009605	ENSSDUG00000009561 ##22	TMEM238 (ENSSDUG00000009552)	ccdc106a (ENSSDUG00000009525)	u2af2a (ENSSDUG00000009457)	CACNG6 (ENSSDUG00000009438)	CACNG8 (ENSSDUG00000009419)	CACNG7 (ENSSDUG00000009398)	ENSSDUG00000009359	ENSSDUG00000009121	pitpnc1b (ENSSDUG00000009057)	ENSSDUG00000009040	ENSSDUG00000009031	ntd5 (ENSSDUG00000009007)	ENSSDUG00000008976	ENSSDUG00000008969	ENSSDUG00000008953
Yellowtail amberjack	MODERN SPECIES	3126	rasip1 (ENSSLDG00000023088)	ENSSLDG00000023078	ENSSLDG00000023060	nat14 (ENSSLDG00000023057)	aicda (ENSSLDG00000023022)	NECAP1 (ENSSLDG00000023006)	mfap5 (ENSSLDG00000022999)	sbk3 (ENSSLDG00000022989)	epn1a (ENSSLDG00000022931)	ENSSLDG00000022911	isoc2 (ENSSLDG00000022903)	atg12 (ENSSLDG00000022895)	ENSSLDG00000022884	rcvrn2 (ENSSLDG00000022877)	ENSSLDG00000022869	ENSSLDG00000022832 ##22	TMEM238 (ENSSLDG00000022812)	ccdc106a (ENSSLDG00000022780)	u2af2a (ENSSLDG00000022742)	CACNG6 (ENSSLDG00000022715)	CACNG8 (ENSSLDG00000022690)	CACNG7 (ENSSLDG00000022669)	ENSSLDG00000022630	ENSSLDG00000022600	pitpnc1b (ENSSLDG00000022579)	ENSSLDG00000022553	ENSSLDG00000022547	ntd5 (ENSSLDG00000022522)	ENSSLDG00000022494	ENSSLDG00000022479	ENSSLDG00000022475
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Turbot	MODERN SPECIES		rasip1 (ENSSMAG00000012282)	ENSSMAG00000012298	ENSSMAG00000012307	nat14 (ENSSMAG00000012323)	aicda (ENSSMAG00000012339)	ENSSMAG00000021688	mfap5 (ENSSMAG00000012362)	sbk3 (ENSSMAG00000012382)	epn1a (ENSSMAG00000012392)	ENSSMAG00000012430	isoc2 (ENSSMAG00000012444)	atg12 (ENSSMAG00000012486)	ENSSMAG00000012525	rcvrn2 (ENSSMAG00000012527)	ENSSMAG00000012531	ENSSMAG00000012536 ##22	ENSSMAG00000012568	ENSSMAG00000012571	u2af2a (ENSSMAG00000012582)	ENSSMAG00000032873	CACNG8 (ENSSMAG00000012676)	ENSSMAG00000012686	ENSSMAG00000012724	ENSSMAG00000012763	pitpnc1b (ENSSMAG00000012783)	ENSSMAG00000012817	ENSSMAG00000012836	ntd5 (ENSSMAG00000012844)	ENSSMAG00000012878	ENSSMAG00000012891	ube2s (ENSSMAG00000012911)
Tongue sole	MODERN SPECIES	4	cox6b2 (ENSCSEG00000018473)	rasip1 (ENSCSEG00000018482)	ENSCSEG00000018533	ENSCSEG00000018535	nat14 (ENSCSEG00000018551)	NECAP1 (ENSCSEG00000018557)	aicda (ENSCSEG00000018589)	mfap5 (ENSCSEG00000018600)	sbk3 (ENSCSEG00000018623)	epn1a (ENSCSEG00000018629)	ENSCSEG00000018644	atg12 (ENSCSEG00000018647)	isoc2 (ENSCSEG00000018653)	ENSCSEG00000018669	rcvrn2 (ENSCSEG00000018684)	ENSCSEG00000018691 ##22	TMEM238 (ENSCSEG00000018695)	ccdc106a (ENSCSEG00000018701)	u2af2a (ENSCSEG00000018709)	CACNG6 (ENSCSEG00000018713)	ENSCSEG00000018718	ENSCSEG00000018725	josd2 (ENSCSEG00000018737)	ube2s (ENSCSEG00000018741)	ENSCSEG00000018744	ENSCSEG00000018749	ENSCSEG00000018753	ENSCSEG00000018761	ENSCSEG00000018771	ENSCSEG00000018778	ENSCSEG00000018785
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00940000169205	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Zebra mbuna	MODERN SPECIES	1093	cox6b2 (ENSMZEG00005016714)	rasip1 (ENSMZEG00005016713)	ENSMZEG00005016709	ENSMZEG00005016706	nat14 (ENSMZEG00005016702)	aicda (ENSMZEG00005016678)	ENSMZEG00005016661	mfap5 (ENSMZEG00005016657)	sbk3 (ENSMZEG00005016653)	epn1a (ENSMZEG00005016642)	ENSMZEG00005016631	isoc2 (ENSMZEG00005016625)	atg12 (ENSMZEG00005016619)	ENSMZEG00005016618	rcvrn2 (ENSMZEG00005016603)	ENSMZEG00005016594 ##22	ENSMZEG00005016591	ccdc106a (ENSMZEG00005016579)	u2af2a (ENSMZEG00005016563)	CACNG6 (ENSMZEG00005016552)	CACNG8 (ENSMZEG00005016549)	CACNG7 (ENSMZEG00005016545)	ENSMZEG00005016536	ENSMZEG00005016517	pitpnc1b (ENSMZEG00005016508)	ENSMZEG00005016499	ENSMZEG00005016492	ntd5 (ENSMZEG00005016484)	ENSMZEG00005016478	ENSMZEG00005016473	ENSMZEG00005016465
Eastern happy	MODERN SPECIES	2	cox6b2 (ENSACLG00000022879)	rasip1 (ENSACLG00000022854)	ENSACLG00000022834	ENSACLG00000022827	aicda (ENSACLG00000022679)	nat14 (ENSACLG00000022648)	ENSACLG00000022588	mfap5 (ENSACLG00000022552)	sbk3 (ENSACLG00000022541)	epn1a (ENSACLG00000022498)	ENSACLG00000022468	isoc2 (ENSACLG00000022437)	atg12 (ENSACLG00000022414)	ENSACLG00000022406	rcvrn2 (ENSACLG00000022379)	ENSACLG00000022284 ##22	ENSACLG00000022276	ccdc106a (ENSACLG00000022241)	u2af2a (ENSACLG00000022181)	CACNG6 (ENSACLG00000022158)	CACNG8 (ENSACLG00000022145)	CACNG7 (ENSACLG00000022108)	ENSACLG00000022019	ENSACLG00000021986	pitpnc1b (ENSACLG00000021916)	ENSACLG00000021891	ENSACLG00000021842	ntd5 (ENSACLG00000021818)	ENSACLG00000021792	ENSACLG00000021789	ENSACLG00000021765
P. nyererei	MODERN SPECIES	340	cox6b2 (ENSPNYG00000000740)	rasip1 (ENSPNYG00000000757)	ENSPNYG00000000945	ENSPNYG00000000963	nat14 (ENSPNYG00000000970)	aicda (ENSPNYG00000000988)	ENSPNYG00000001128	mfap5 (ENSPNYG00000001205)	sbk3 (ENSPNYG00000001213)	epn1a (ENSPNYG00000001256)	ENSPNYG00000001268	isoc2 (ENSPNYG00000001294)	atg12 (ENSPNYG00000001302)	ENSPNYG00000001321	rcvrn2 (ENSPNYG00000001349)	ENSPNYG00000001358 ##22	ENSPNYG00000001405	ccdc106a (ENSPNYG00000001413)	u2af2a (ENSPNYG00000001438)	CACNG6 (ENSPNYG00000001477)	CACNG8 (ENSPNYG00000001490)	CACNG7 (ENSPNYG00000001512)	ENSPNYG00000001545	ENSPNYG00000001617	pitpnc1b (ENSPNYG00000001658)	ENSPNYG00000001718	ENSPNYG00000001727	ntd5 (ENSPNYG00000001737)	ENSPNYG00000001748	ENSPNYG00000001753	ENSPNYG00000001763
Burton s mouthbrooder	MODERN SPECIES	338	rasip1 (ENSHBUG00000000417)	cox6b2 (ENSHBUG00000014395)	ENSHBUG00000014381	ENSHBUG00000014373	nat14 (ENSHBUG00000014358)	aicda (ENSHBUG00000014333)	ENSHBUG00000014173	mfap5 (ENSHBUG00000014162)	sbk3 (ENSHBUG00000014155)	epn1a (ENSHBUG00000014144)	ENSHBUG00000014111	isoc2 (ENSHBUG00000014104)	atg12 (ENSHBUG00000014092)	ENSHBUG00000014061	rcvrn2 (ENSHBUG00000014075)	ENSHBUG00000014050 ##22	ENSHBUG00000013979	ccdc106a (ENSHBUG00000013972)	u2af2a (ENSHBUG00000013935)	CACNG6 (ENSHBUG00000013875)	CACNG8 (ENSHBUG00000013859)	CACNG7 (ENSHBUG00000013824)	ENSHBUG00000013792	ENSHBUG00000013751	pitpnc1b (ENSHBUG00000013745)	ENSHBUG00000013698	ENSHBUG00000013686	ntd5 (ENSHBUG00000013665)	ENSHBUG00000013635	ENSHBUG00000013630	ENSHBUG00000013604
Lyretail cichlid	MODERN SPECIES	386	ENSNBRG00000001783	ENSNBRG00000001955	cox6b2 (ENSNBRG00000002002)	rasip1 (ENSNBRG00000002034)	ENSNBRG00000002218	ENSNBRG00000002235	nat14 (ENSNBRG00000002286)	mfap5 (ENSNBRG00000002295)	sbk3 (ENSNBRG00000002310)	epn1a (ENSNBRG00000002350)	ENSNBRG00000002364	isoc2 (ENSNBRG00000002396)	atg12 (ENSNBRG00000002409)	ENSNBRG00000002420	rcvrn2 (ENSNBRG00000002448)	ENSNBRG00000002485 ##22	ENSNBRG00000002550	ccdc106a (ENSNBRG00000002554)	u2af2a (ENSNBRG00000002568)	CACNG6 (ENSNBRG00000002624)	CACNG8 (ENSNBRG00000002643)	CACNG7 (ENSNBRG00000002747)	ENSNBRG00000002774	ENSNBRG00000002823	pitpnc1b (ENSNBRG00000002873)	ENSNBRG00000002905	ENSNBRG00000002913	ntd5 (ENSNBRG00000002932)	ENSNBRG00000002981	ENSNBRG00000002993	ENSNBRG00000003004
Nile tilapia	MODERN SPECIES	2	ENSONIG00000012832	cox6b2 (ENSONIG00000035452)	rasip1 (ENSONIG00000012829)	ENSONIG00000036013	ENSONIG00000040527	nat14 (ENSONIG00000012824)	aicda (ENSONIG00000012820)	ENSONIG00000038495	sbk3 (ENSONIG00000031924)	epn1a (ENSONIG00000012815)	ENSONIG00000033819	isoc2 (ENSONIG00000012812)	atg12 (ENSONIG00000030552)	ENSONIG00000012810	rcvrn2 (ENSONIG00000012809)	ENSONIG00000012802 ##22	ENSONIG00000042351	ccdc106a (ENSONIG00000012800)	u2af2a (ENSONIG00000012793)	CACNG6 (ENSONIG00000012791)	CACNG8 (ENSONIG00000012789)	ENSONIG00000012786	ENSONIG00000012785	pitpnc1b (ENSONIG00000012783)	ENSONIG00000029470	ENSONIG00000012782	ntd5 (ENSONIG00000012779)	ENSONIG00000012778	ENSONIG00000027933	ENSONIG00000036527	ube2s (ENSONIG00000012775)
Midas cichlid	MODERN SPECIES	791																ENSACIG00000005670 ##22	TMEM238 (ENSACIG00000005726)	ccdc106a (ENSACIG00000005731)	u2af2a (ENSACIG00000005749)	CACNG6 (ENSACIG00000005771)	CACNG8 (ENSACIG00000005787)	CACNG7 (ENSACIG00000005803)	ENSACIG00000005814	ENSACIG00000005876	pitpnc1b (ENSACIG00000006021)	ENSACIG00000006038	ENSACIG00000006084	ntd5 (ENSACIG00000006096)	ENSACIG00000006120	ENSACIG00000006149	ENSACIG00000006153
Pomacentridae	ANCESTRAL SPECIES	50	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00940000169205	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244893.c.b.a.h	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a
Pomacentridae_A	ANCESTRAL SPECIES	44	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00940000169205	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.h	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Amphiprion	ANCESTRAL SPECIES	84	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00940000169205	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.h	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000178219.C	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00980000199502	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000009865	ENSAPEG00000009826	ENSAPEG00000009784	aicda (ENSAPEG00000009755)	ENSAPEG00000009723	mfap5 (ENSAPEG00000009696)	sbk3 (ENSAPEG00000009687)	epn1a (ENSAPEG00000009568)	ENSAPEG00000009557	isoc2 (ENSAPEG00000009549)	atg12 (ENSAPEG00000009536)	ENSAPEG00000009527	rcvrn2 (ENSAPEG00000009499)	ENSAPEG00000009484	ENSAPEG00000009465	ENSAPEG00000009445 ##22	TMEM238 (ENSAPEG00000009436)	ccdc106a (ENSAPEG00000009407)	u2af2a (ENSAPEG00000009376)	CACNG6 (ENSAPEG00000009365)	CACNG8 (ENSAPEG00000009299)	ENSAPEG00000009272	CACNG7 (ENSAPEG00000009253)	ENSAPEG00000008956	ENSAPEG00000008919	ENSAPEG00000008758	pitpnc1b (ENSAPEG00000008718)	ENSAPEG00000008636	ENSAPEG00000008620	ntd5 (ENSAPEG00000008573)	ENSAPEG00000008555
Clown anemonefish	MODERN SPECIES	3501	ENSAOCG00000005060	snx18b (ENSAOCG00000005055)	ENSAOCG00000005047	rasgef1bb (ENSAOCG00000005024)	antxr2b (ENSAOCG00000005000)	paqr3b (ENSAOCG00000004960)	slc26a1 (ENSAOCG00000004942)	ENSAOCG00000004926	epn1a (ENSAOCG00000004889)	ENSAOCG00000004846	isoc2 (ENSAOCG00000004827)	atg12 (ENSAOCG00000004821)	ENSAOCG00000004813	rcvrn2 (ENSAOCG00000004798)	ENSAOCG00000004787	ENSAOCG00000004770 ##22
Spiny chromis	MODERN SPECIES	112	ENSAPOG00000021951	xrn1 (ENSAPOG00000000622)	ENSAPOG00000021484	ENSAPOG00000021440	crispld1b (ENSAPOG00000021241)	NETO1 (ENSAPOG00000021172)	atpsckmt (ENSAPOG00000021126)	marchf6 (ENSAPOG00000021110)	ANKRD33B (ENSAPOG00000020982)	ctnnd2b (ENSAPOG00000020939)	ENSAPOG00000020865	lyn (ENSAPOG00000020852)	urod (ENSAPOG00000020792)	zswim5 (ENSAPOG00000020749)	rcvrn2 (ENSAPOG00000020660)	ENSAPOG00000020651 ##22	ENSAPOG00000020633
Bicolor damselfish	MODERN SPECIES	1302	rasip1 (ENSSPAG00000021544)	ENSSPAG00000021535	ENSSPAG00000021516	ENSSPAG00000021510	aicda (ENSSPAG00000021499)	ENSSPAG00000021493	ENSSPAG00000021481	mfap5 (ENSSPAG00000021470)	sbk3 (ENSSPAG00000021460)	epn1a (ENSSPAG00000021440)	ENSSPAG00000021431	isoc2 (ENSSPAG00000021424)	atg12 (ENSSPAG00000021417)	ENSSPAG00000021395	rcvrn2 (ENSSPAG00000021342)	ENSSPAG00000021304 ##22
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT01100000263505.b.b.a.b.a.b.b	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Indian medaka	MODERN SPECIES	5	rasip1 (ENSOMEG00000011994)	ENSOMEG00000011941	ENSOMEG00000011928	nat14 (ENSOMEG00000011903)	aicda (ENSOMEG00000011880)	NECAP1 (ENSOMEG00000011820)	mfap5 (ENSOMEG00000011790)	sbk3 (ENSOMEG00000011722)	epn1a (ENSOMEG00000011704)	ENSOMEG00000011647	isoc2 (ENSOMEG00000011621)	atg12 (ENSOMEG00000011613)	ENSOMEG00000011597	rcvrn2 (ENSOMEG00000011583)	ENSOMEG00000011537	ENSOMEG00000011523 ##22	ENSOMEG00000011430	ccdc106a (ENSOMEG00000011424)	u2af2a (ENSOMEG00000011386)	CACNG6 (ENSOMEG00000011340)	CACNG8 (ENSOMEG00000011321)	CACNG7 (ENSOMEG00000011308)	ENSOMEG00000011269	ENSOMEG00000011220	pitpnc1b (ENSOMEG00000011182)	ENSOMEG00000011151	ENSOMEG00000011068	ntd5 (ENSOMEG00000011043)	ENSOMEG00000011013	ENSOMEG00000010995	ENSOMEG00000010978
Javanese ricefish	MODERN SPECIES	7	rasip1 (ENSOJAG00000011430)	ENSOJAG00000011410	ENSOJAG00000011392	nat14 (ENSOJAG00000011372)	aicda (ENSOJAG00000011351)	NECAP1 (ENSOJAG00000011341)	mfap5 (ENSOJAG00000011325)	sbk3 (ENSOJAG00000011316)	epn1a (ENSOJAG00000011247)	ENSOJAG00000011227	isoc2 (ENSOJAG00000011195)	atg12 (ENSOJAG00000011178)	ENSOJAG00000011164	rcvrn2 (ENSOJAG00000011136)	ENSOJAG00000011124	ENSOJAG00000011103 ##22	ENSOJAG00000011075	ccdc106a (ENSOJAG00000011063)	u2af2a (ENSOJAG00000010746)	CACNG6 (ENSOJAG00000010714)	CACNG8 (ENSOJAG00000010709)	CACNG7 (ENSOJAG00000010701)	ENSOJAG00000009514	ENSOJAG00000009273	pitpnc1b (ENSOJAG00000009252)	ENSOJAG00000009235	ENSOJAG00000009188	ntd5 (ENSOJAG00000009169)	ENSOJAG00000009155	ENSOJAG00000009130	ENSOJAG00000009121
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00980000199502	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Chinese medaka	MODERN SPECIES	467	cox6b2 (ENSOSIG00000004553)	rasip1 (ENSOSIG00000004538)	ENSOSIG00000004532	ENSOSIG00000004528	nat14 (ENSOSIG00000004523)	aicda (ENSOSIG00000004518)	ENSOSIG00000004514	mfap5 (ENSOSIG00000004507)	sbk3 (ENSOSIG00000004502)	epn1a (ENSOSIG00000004456)	ENSOSIG00000004450	isoc2 (ENSOSIG00000004444)	atg12 (ENSOSIG00000004436)	ENSOSIG00000004430	rcvrn2 (ENSOSIG00000004425)	ENSOSIG00000004420 ##22	ENSOSIG00000004418	ccdc106a (ENSOSIG00000004415)	u2af2a (ENSOSIG00000004403)	CACNG6 (ENSOSIG00000004398)	CACNG8 (ENSOSIG00000004395)	CACNG7 (ENSOSIG00000004393)	ENSOSIG00000004304	pitpnc1b (ENSOSIG00000004291)	ENSOSIG00000004280	ENSOSIG00000004204	ENSOSIG00000004196	ENSOSIG00000004090	ENSOSIG00000004077	ENSOSIG00000004069	ube2s (ENSOSIG00000003971)
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000026599	ENSORLG00000025888	nat14 (ENSORLG00000029300)	aicda (ENSORLG00000011705)	NECAP1 (ENSORLG00000011683)	mfap5 (ENSORLG00000011664)	sbk3 (ENSORLG00000025071)	epn1a (ENSORLG00000011659)	ENSORLG00000011631	isoc2 (ENSORLG00000011616)	atg12 (ENSORLG00000011601)	ENSORLG00000011592	rcvrn2 (ENSORLG00000011585)	ENSORLG00000011576	ENSORLG00000027600	ENSORLG00000011572 ##22	TMEM238 (ENSORLG00000022268)	ccdc106a (ENSORLG00000011560)	u2af2a (ENSORLG00000011545)	ENSORLG00000011512	CACNG8 (ENSORLG00000026393)	ENSORLG00000011496	ENSORLG00000011481	ENSORLG00000011448	pitpnc1b (ENSORLG00000011438)	ENSORLG00000030235	ENSORLG00000027114	ntd5 (ENSORLG00000011418)	ENSORLG00000026564	ENSORLG00000030231	ENSORLG00000027752
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Mangrove rivulus	MODERN SPECIES	33	rasip1 (ENSKMAG00000006465)	ENSKMAG00000006437	ENSKMAG00000006425	nat14 (ENSKMAG00000006413)	aicda (ENSKMAG00000006359)	ENSKMAG00000006342	mfap5 (ENSKMAG00000006320)	sbk3 (ENSKMAG00000006310)	epn1a (ENSKMAG00000006249)	ENSKMAG00000006215	isoc2 (ENSKMAG00000006177)	atg12 (ENSKMAG00000006125)	ENSKMAG00000006100	rcvrn2 (ENSKMAG00000006077)	TMEM238 (ENSKMAG00000006064)	ENSKMAG00000006016 ##22	ccdc106a (ENSKMAG00000006002)	u2af2a (ENSKMAG00000005960)	CACNG6 (ENSKMAG00000005910)	CACNG8 (ENSKMAG00000005882)	CACNG7 (ENSKMAG00000005844)	ENSKMAG00000005756	ENSKMAG00000005582	pitpnc1b (ENSKMAG00000005489)	ENSKMAG00000005463	ntd5 (ENSKMAG00000005451)	ENSKMAG00000005438	ENSKMAG00000005431	SHISA7 (ENSKMAG00000005420)	ube2s (ENSKMAG00000005409)	josd2 (ENSKMAG00000005394)
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015003379	ENSNFUG00015003382	ENSNFUG00015003384	cblc (ENSNFUG00015003390)	ENSNFUG00015003396	TOMM40 (ENSNFUG00015003414)	ENSNFUG00015003428	ENSNFUG00015003449	EPN1 (ENSNFUG00015003490)	ENSNFUG00015003498	ENSNFUG00015003504	ISOC2 (ENSNFUG00015003507)	atg12 (ENSNFUG00015003512)	ENSNFUG00015008982	rcvrn2 (ENSNFUG00015009004)	ENSNFUG00015009067 ##22	TMEM238 (ENSNFUG00015009076)	CCDC106 (ENSNFUG00015009089)	u2af2a (ENSNFUG00015009124)	SETDB1B (ENSNFUG00015009197)	ENSNFUG00015009478	cyp11c1 (ENSNFUG00015009520)	pklr (ENSNFUG00015010007)	ENSNFUG00015010707	zbtb7b (ENSNFUG00015010734)	KIAA0907 (ENSNFUG00015010744)	ENSNFUG00015010786	ENSNFUG00015010800	ENSNFUG00015010883	ENSNFUG00015010974	si:ch211-120k19.1 (ENSNFUG00015010979)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Poecilia	ANCESTRAL SPECIES		ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
NAME_6	ANCESTRAL SPECIES	24	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00940000169205	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b
Sailfin molly	MODERN SPECIES	949		ENSPLAG00000000735	ENSPLAG00000014056	ENSPLAG00000014063	nat14 (ENSPLAG00000000327)	aicda (ENSPLAG00000014098)	ENSPLAG00000014110	mfap5 (ENSPLAG00000014114)	sbk3 (ENSPLAG00000014128)	epn1a (ENSPLAG00000014140)	ENSPLAG00000014167	isoc2 (ENSPLAG00000014173)	atg12 (ENSPLAG00000014193)	ENSPLAG00000014220	rcvrn2 (ENSPLAG00000014237)	ENSPLAG00000014268 ##22	ENSPLAG00000014286	ccdc106a (ENSPLAG00000014301)	u2af2a (ENSPLAG00000014365)	CACNG6 (ENSPLAG00000014381)	CACNG8 (ENSPLAG00000014412)	cldni (ENSPLAG00000014431)	cldni (ENSPLAG00000014445)	coro1a (ENSPLAG00000014462)	paqr4a (ENSPLAG00000014483)	ENSPLAG00000014561	ENSPLAG00000014593
Amazon molly	MODERN SPECIES	286	rasip1 (ENSPFOG00000011286)	rasip1 (ENSPFOG00000024648)	ENSPFOG00000011283	ENSPFOG00000011261	nat14 (ENSPFOG00000011248)	aicda (ENSPFOG00000011197)	ENSPFOG00000011160	sbk3 (ENSPFOG00000011147)	epn1a (ENSPFOG00000011071)	ENSPFOG00000011037	isoc2 (ENSPFOG00000011034)	atg12 (ENSPFOG00000010997)	ENSPFOG00000010958	rcvrn2 (ENSPFOG00000010932)	ENSPFOG00000020012	ENSPFOG00000010888 ##22	ccdc106a (ENSPFOG00000010872)	u2af2a (ENSPFOG00000010799)	CACNG6 (ENSPFOG00000010767)	CACNG8 (ENSPFOG00000010714)	CACNG7 (ENSPFOG00000010641)	ENSPFOG00000010576	ENSPFOG00000010453	pitpnc1b (ENSPFOG00000010339)	ENSPFOG00000010279	ENSPFOG00000022173	ntd5 (ENSPFOG00000010220)	ENSPFOG00000010189	ENSPFOG00000010178	ENSPFOG00000010162	ube2s (ENSPFOG00000010144)
Platyfish	MODERN SPECIES	17	ENSXMAG00000011873	ENSXMAG00000011876	nat14 (ENSXMAG00000011888)	aicda (ENSXMAG00000011889)	ENSXMAG00000025004	ENSXMAG00000011893	mfap5 (ENSXMAG00000022392)	sbk3 (ENSXMAG00000011908)	epn1a (ENSXMAG00000011911)	ENSXMAG00000011915	isoc2 (ENSXMAG00000011922)	atg12 (ENSXMAG00000011936)	ENSXMAG00000011948	rcvrn2 (ENSXMAG00000026030)	ENSXMAG00000022465	ENSXMAG00000011967 ##22	ENSXMAG00000019902	ENSXMAG00000011971	u2af2a (ENSXMAG00000011979)	CACNG6 (ENSXMAG00000011991)	CACNG8 (ENSXMAG00000020924)	CACNG7 (ENSXMAG00000009638)	ENSXMAG00000009653	ENSXMAG00000012023	pitpnc1b (ENSXMAG00000012030)	ENSXMAG00000012042	ENSXMAG00000021620	ntd5 (ENSXMAG00000021349)	ENSXMAG00000012054	ENSXMAG00000023004	ENSXMAG00000021975
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000164148.a.a.c.a	ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00940000155965.b	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT00940000155556.d	ENSGT00390000007786.b.g	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.g	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.b	ENSGT00530000064557.a	ENSGT00940000162254.b	ENSGT00940000157149
Mummichog	MODERN SPECIES	2345	cox6b2 (ENSFHEG00000015683)	rasip1 (ENSFHEG00000015696)	ENSFHEG00000015709	ENSFHEG00000015718	nat14 (ENSFHEG00000015725)	aicda (ENSFHEG00000015733)	NECAP1 (ENSFHEG00000015745)	mfap5 (ENSFHEG00000015753)	sbk3 (ENSFHEG00000015760)	epn1a (ENSFHEG00000015783)	ENSFHEG00000000384	isoc2 (ENSFHEG00000015804)	atg12 (ENSFHEG00000015815)	ENSFHEG00000015841	rcvrn2 (ENSFHEG00000015858)	ENSFHEG00000015917 ##22	TMEM238 (ENSFHEG00000015933)	ccdc106a (ENSFHEG00000015949)	u2af2a (ENSFHEG00000016025)	CACNG6 (ENSFHEG00000016042)	CACNG8 (ENSFHEG00000016101)	CACNG7 (ENSFHEG00000016144)	ENSFHEG00000016207	ENSFHEG00000016264	pitpnc1b (ENSFHEG00000016300)	ENSFHEG00000016304	ntd5 (ENSFHEG00000016310)	ENSFHEG00000000408	ENSFHEG00000016323	ENSFHEG00000016337	ube2s (ENSFHEG00000016346)
Sheepshead minnow	MODERN SPECIES	160	ENSCVAG00000001203	rasip1 (ENSCVAG00000001207)	ENSCVAG00000001209	ENSCVAG00000001212	nat14 (ENSCVAG00000001213)	aicda (ENSCVAG00000001218)	NECAP1 (ENSCVAG00000001221)	mfap5 (ENSCVAG00000001223)	sbk3 (ENSCVAG00000001224)	epn1a (ENSCVAG00000001233)	ENSCVAG00000001239	isoc2 (ENSCVAG00000001240)	atg12 (ENSCVAG00000001242)	ENSCVAG00000001243	rcvrn2 (ENSCVAG00000001247)	ENSCVAG00000001248 ##22	ENSCVAG00000001249	ccdc106a (ENSCVAG00000001253)	u2af2a (ENSCVAG00000001259)	CACNG6 (ENSCVAG00000001260)	CACNG8 (ENSCVAG00000001262)
Pinecone sodierfish	MODERN SPECIES	7	cox6b2 (ENSMMDG00005011839)	rasip1 (ENSMMDG00005011826)	ENSMMDG00005011823	ENSMMDG00005011819	nat14 (ENSMMDG00005011817)	aicda (ENSMMDG00005011815)	ENSMMDG00005011807	mfap5 (ENSMMDG00005011805)	epn1a (ENSMMDG00005011801)	ENSMMDG00005011796	isoc2 (ENSMMDG00005011793)	atg12 (ENSMMDG00005011792)	ENSMMDG00005011791	rcvrn2 (ENSMMDG00005011789)	ENSMMDG00005011788	ENSMMDG00005011783 ##22	TMEM238 (ENSMMDG00005011779)	ccdc106a (ENSMMDG00005011778)	u2af2a (ENSMMDG00005011629)	CACNG6 (ENSMMDG00005011616)	CACNG8 (ENSMMDG00005011610)	CACNG7 (ENSMMDG00005011607)	ENSMMDG00005009993	ENSMMDG00005009929	pitpnc1b (ENSMMDG00005009921)	ENSMMDG00005009913	ntd5 (ENSMMDG00005009910)	ENSMMDG00005009888	ENSMMDG00005009883	ENSMMDG00005009879	ube2s (ENSMMDG00005009876)
Cod	MODERN SPECIES	2	rasip1 (ENSGMOG00000024013)	ENSGMOG00000004052	ENSGMOG00000025658	nat14 (ENSGMOG00000030315)	aicda (ENSGMOG00000004114)	ENSGMOG00000004129	mfap5 (ENSGMOG00000035586)	sbk3 (ENSGMOG00000022206)	epn1a (ENSGMOG00000004206)	isoc2 (ENSGMOG00000004234)	ENSGMOG00000023232	ENSGMOG00000036877	atg12 (ENSGMOG00000004463)	ENSGMOG00000022495	rcvrn2 (ENSGMOG00000004479)	ENSGMOG00000024472 ##22	ENSGMOG00000030997	ENSGMOG00000004514	u2af2a (ENSGMOG00000004535)	ENSGMOG00000030170	CACNG8 (ENSGMOG00000035241)	ENSGMOG00000004581	ENSGMOG00000004601	ENSGMOG00000004635	pitpnc1b (ENSGMOG00000004688)	ENSGMOG00000025949	ENSGMOG00000026688	ENSGMOG00000035647	ntd5 (ENSGMOG00000004780)	ENSGMOG00000031664	ENSGMOG00000028464
Otomorpha	ANCESTRAL SPECIES	200						ENSGT00940000172009	ENSGT00940000156524.b	ENSGT00530000064050.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT00620000088774	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.h	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000002109	ENSGT00940000165997.b	ENSGT00940000157871.h.a	ENSGT00440000033697	ENSGT00940000166290	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305
Clupeiformes	ANCESTRAL SPECIES	190					ENSGT00940000165521.b.a	ENSGT00390000003062	ENSGT00940000156524.b	ENSGT00530000064050.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT01060000249822	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a.g	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.h	ENSGT00390000002109	ENSGT00940000165997.b	ENSGT00940000157871.h.a	ENSGT00440000033697.eb	ENSGT00440000033697.db.b	ENSGT00940000166290	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000020017	gtpbp10 (ENSCHAG00000020031)	ENSCHAG00000020324	ENSCHAG00000020392	znf687a (ENSCHAG00000020398)	psmd4b (ENSCHAG00000020415)	pip5k1ab (ENSCHAG00000020497)	ENSCHAG00000020676	ENSCHAG00000020684	ENSCHAG00000020692	ENSCHAG00000020697	them4 (ENSCHAG00000020740)	si:dkey-87o1.2 (ENSCHAG00000020764)	ENSCHAG00000020771	ENSCHAG00000020776	ENSCHAG00000020783 ##22	TMEM238 (ENSCHAG00000020801)	ccdc106a (ENSCHAG00000020807)	ENSCHAG00000020828	m6pr (ENSCHAG00000020879)	phc1 (ENSCHAG00000020884)	styk1b (ENSCHAG00000020899)	ENSCHAG00000020967	ENSCHAG00000021030	casp2 (ENSCHAG00000021054)	CLCN1 (ENSCHAG00000021193)	FAM131B (ENSCHAG00000021753)	zyx (ENSCHAG00000021777)	ENSCHAG00000021783	emg1 (ENSCHAG00000021790)	gtf3c6 (ENSCHAG00000021812)
Denticle herring	MODERN SPECIES	14								ENSDCDG00000001647	si:dkey-87o1.2 (ENSDCDG00000001645)	znf687a (ENSDCDG00000029367)	ENSDCDG00000029363	them4 (ENSDCDG00000029358)	si:dkey-87o1.2 (ENSDCDG00000029357)	ENSDCDG00000029356	ENSDCDG00000029354	ENSDCDG00000029350 ##22	TMEM238 (ENSDCDG00000029349)	etfb (ENSDCDG00000029343)	USF2 (ENSDCDG00000029340)	ENSDCDG00000029336	iglon5 (ENSDCDG00000029324)	ENSDCDG00000029313	ENSDCDG00000029310	fzd1 (ENSDCDG00000029308)	cdk14 (ENSDCDG00000029100)	ENSDCDG00000029088	ENSDCDG00000029086	ADGRB1 (ENSDCDG00000028645)	ENSDCDG00000028603	ENSDCDG00000028601	si:ch211-198c19.1 (ENSDCDG00000028594)
Otophysi	ANCESTRAL SPECIES	177	ENSGT00940000154686.b	ENSGT00390000000781	ENSGT00940000162435	ENSGT00940000158862	ENSGT00940000155788.k	ENSGT00940000160453	ENSGT00940000164382.b.b	ENSGT00530000064050.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT00620000088774	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000002109	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305	ENSGT00390000000510	ENSGT00940000161554	ENSGT00390000015492.A	ENSGT00940000153298.i.a	ENSGT01100000263524.B.a.a
Characiphysae	ANCESTRAL SPECIES		ENSGT00510000049347.g	ENSGT00940000154686.b	ENSGT00390000000781	ENSGT00940000162435	ENSGT00940000158862.i.a	ENSGT00940000155788.k	ENSGT00940000160453	ENSGT00940000164382.b.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT00620000088774	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.h	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000002109	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305	ENSGT00390000000510	ENSGT00940000161554	ENSGT00390000015492.A	ENSGT00940000153298.i.a
Channel catfish	MODERN SPECIES		dpyd (ENSIPUG00000009281)	ptbp2a (ENSIPUG00000009221)	hccsb (ENSIPUG00000009208)	ENSIPUG00000009184	ENSIPUG00000009169	ENSIPUG00000009144	ENSIPUG00000009128	vamp1b (ENSIPUG00000009116)	pip5k1ab (ENSIPUG00000009063)	ecm1 (ENSIPUG00000009017)	ENSIPUG00000008978	them4 (ENSIPUG00000008960)	si:dkey-87o1.2 (ENSIPUG00000008937)	ENSIPUG00000008916	ENSIPUG00000008911	ENSIPUG00000008862 ##22	TMEM238 (ENSIPUG00000008846)	ccdc106a (ENSIPUG00000008764)	ENSIPUG00000008743	ENSIPUG00000008719	M6pr (ENSIPUG00000008681)	casp2 (ENSIPUG00000008552)	CLCN1 (ENSIPUG00000008413)	ENSIPUG00000008379	FAM131B (ENSIPUG00000008365)	zyx (ENSIPUG00000008337)	ENSIPUG00000008285	emg1 (ENSIPUG00000008261)	gtf3c6 (ENSIPUG00000008252)	nop2 (ENSIPUG00000008198)	wu:fj39g12 (ENSIPUG00000008182)
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00510000049347.g	ENSGT00940000154686.b	ENSGT00390000000781	ENSGT00940000162435	ENSGT00940000158862.i.a	ENSGT00940000155788.k	ENSGT00940000160453	ENSGT00940000164382.b.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT00620000088774	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.h	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000002109	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305	ENSGT00390000000510	ENSGT00940000161554	ENSGT00390000015492.A	ENSGT00940000153298.i.a
Characoidei	ANCESTRAL SPECIES	7	ENSGT00510000049347.g	ENSGT00940000154686.b	ENSGT00390000000781	ENSGT00940000162435	ENSGT00940000158862.i.a	ENSGT00940000155788.k	ENSGT00940000160453	ENSGT00940000164382.b.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT00620000088774	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.h	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000002109	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305	ENSGT00390000000510	ENSGT00940000161554	ENSGT00390000015492.A	ENSGT00940000153298.i.a
Red-bellied piranha	MODERN SPECIES	67	cep76 (ENSPNAG00000020693)	id4 (ENSPNAG00000020659)	ncalda (ENSPNAG00000020644)	grhl2a (ENSPNAG00000020616)	ENSPNAG00000020600	ENSPNAG00000020578	ENSPNAG00000020557	vamp1b (ENSPNAG00000020529)	pip5k1ab (ENSPNAG00000020519)	ENSPNAG00000020500	ENSPNAG00000020463	them4 (ENSPNAG00000020439)	si:dkey-87o1.2 (ENSPNAG00000020427)	zgc:174935 (ENSPNAG00000020413)	ENSPNAG00000020403	ENSPNAG00000020397 ##22	TMEM238 (ENSPNAG00000020329)	ccdc106a (ENSPNAG00000020318)	ENSPNAG00000020258	ENSPNAG00000020242	m6pr (ENSPNAG00000020210)	casp2 (ENSPNAG00000020200)	CLCN1 (ENSPNAG00000003638)	FAM131B (ENSPNAG00000020111)	zyx (ENSPNAG00000003623)	ENSPNAG00000005020	emg1 (ENSPNAG00000019953)	ENSPNAG00000019928	gtf3c6 (ENSPNAG00000019896)	nop2 (ENSPNAG00000019880)	nppcl (ENSPNAG00000006757)
Mexicana tetra	MODERN SPECIES	1	cep76 (ENSAMXG00000000217)	ENSAMXG00000043847	id4 (ENSAMXG00000031634)	ncalda (ENSAMXG00000041366)	grhl2a (ENSAMXG00000000221)	ENSAMXG00000000229	vamp1b (ENSAMXG00000044022)	pip5k1ab (ENSAMXG00000000234)	ENSAMXG00000019072	ENSAMXG00000019070	them4 (ENSAMXG00000040390)	ENSAMXG00000043574	si:dkey-87o1.2 (ENSAMXG00000039023)	zgc:174935 (ENSAMXG00000039231)	ENSAMXG00000039301	ENSAMXG00000019061 ##22	TMEM238 (ENSAMXG00000025100)	ccdc106a (ENSAMXG00000019054)	ENSAMXG00000041889	m6pr (ENSAMXG00000037010)	casp2 (ENSAMXG00000019043)	CLCN1 (ENSAMXG00000019025)	FAM131B (ENSAMXG00000019016)	zyx (ENSAMXG00000019006)	ENSAMXG00000018998	emg1 (ENSAMXG00000018994)	gtf3c6 (ENSAMXG00000038574)	nop2 (ENSAMXG00000018985)	nppcl (ENSAMXG00000018980)	gapdh (ENSAMXG00000039361)	opn9 (ENSAMXG00000018966)
Electric eel	MODERN SPECIES	100					ENSEEEG00000019593	ctdp1 (ENSEEEG00000019606)	scg3 (ENSEEEG00000019611)	lysmd2 (ENSEEEG00000019629)	pip5k1ab (ENSEEEG00000019638)	ENSEEEG00000019642	ENSEEEG00000019651	them4 (ENSEEEG00000019660)	si:dkey-87o1.2 (ENSEEEG00000019661)	zgc:174935 (ENSEEEG00000019662)	ENSEEEG00000019664	ENSEEEG00000019666 ##22	ENSEEEG00000019670	ccdc106a (ENSEEEG00000019671)	ENSEEEG00000019673	m6pr (ENSEEEG00000019680)	casp2 (ENSEEEG00000019681)	ENSEEEG00000019685	FAM131B (ENSEEEG00000019687)	ENSEEEG00000019689	ENSEEEG00000019691	emg1 (ENSEEEG00000019695)	gtf3c6 (ENSEEEG00000019696)	nop2 (ENSEEEG00000019698)	nppcl (ENSEEEG00000019703)	gapdh (ENSEEEG00000019740)	IFFO1 (ENSEEEG00000021205)
Cyprinoidei	ANCESTRAL SPECIES	122	ENSGT00940000154686.b	ENSGT00390000000781.i	ENSGT00940000162435	ENSGT00940000158862	ENSGT00940000155788.k	ENSGT00940000160453	ENSGT00940000164382.b.b	ENSGT00530000064050.b	ENSGT00940000154703.j	ENSGT00390000006215.a	ENSGT00940000167484	ENSGT00940000160047	ENSGT00390000015721	ENSGT00620000088774	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000002109	ENSGT00940000156657	ENSGT00940000157383.g.b	ENSGT00950000183106.a.b.b	ENSGT00940000154273.a	ENSGT00940000156745.b	ENSGT00390000000305	ENSGT00390000000510	ENSGT00940000161554	ENSGT00390000015492.A.e	ENSGT00940000153298.i.a	ENSGT01100000263524.B.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	195	ENSGT00940000154686.b.a	ENSGT00390000000781.j	ENSGT00940000162435	ENSGT00940000158862.g	ENSGT00940000155788.k.d	ENSGT00940000160453.i	ENSGT00940000164382.b.b.a	ENSGT00530000064050.b.h.a	ENSGT00940000154703.j.b	ENSGT00390000006215.a.a	ENSGT00940000167484.a	ENSGT00940000160047.a	ENSGT00390000015721.b	ENSGT00620000088774.d	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b.g ##22	ENSGT00940000160047.b	ENSGT00390000015721.a	ENSGT00620000088774.c	ENSGT00940000153496.b.h ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a.l	ENSGT00390000013183.d.b.a.k	ENSGT01030000234571.b.b.b.a.a.g.b	ENSGT00390000002109.b	ENSGT00940000156657.b	ENSGT00940000157383.g.b.a	ENSGT00950000183106.a.b.b.h	ENSGT00940000154273.a.g	ENSGT00940000156745.b.b
Cyprininae_a	ANCESTRAL SPECIES	184	ENSGT00940000154686.b.b.a	ENSGT00390000000781.i	ENSGT00940000162435.j	ENSGT00940000158862.g	ENSGT00940000155788.k.d	ENSGT00940000160453.i	ENSGT00940000164382.b.b.a	ENSGT00530000064050.b.h.a	ENSGT00940000154703.j.b	ENSGT00390000006215.a.a	ENSGT00940000167484.a	ENSGT00940000160047.a	ENSGT00390000015721.b	ENSGT00620000088774.d	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b.g ##22	ENSGT00390000013183.d.b.a.k	ENSGT01030000234571.b.b.b.a.a.g.b	ENSGT00390000002109.b	ENSGT00940000156657.b	ENSGT00940000157383.g.b.a	ENSGT00950000183106.a.b.b.h	ENSGT00940000154273.a.g
Common carp reference	MODERN SPECIES	47	ENSCCRG00000077227	id4 (ENSCCRG00000065440)	ncalda (ENSCCRG00000063359)	grhl2a (ENSCCRG00000011654)	ENSCCRG00000011647	vamp1b (ENSCCRG00000059605)	psmd4b (ENSCCRG00000010724)	pip5k1ab (ENSCCRG00000009579)	ENSCCRG00000065307	ENSCCRG00000056700	ENSCCRG00000024132	them4 (ENSCCRG00000023355)	zgc:174935 (ENSCCRG00000079968)	ENSCCRG00000004362	si:dkey-87o1.2 (ENSCCRG00000079148)	ENSCCRG00000004326 ##22	ccdc106a (ENSCCRG00000004399)	ENSCCRG00000064244	m6pr (ENSCCRG00000066778)	casp2 (ENSCCRG00000060086)	CLCN1 (ENSCCRG00000040733)	FAM131B (ENSCCRG00000078710)	zyx (ENSCCRG00000012192)	ENSCCRG00000071864	emg1 (ENSCCRG00000004428)	gtf3c6 (ENSCCRG00000076713)	nop2 (ENSCCRG00000072485)	opn9 (ENSCCRG00000068717)	ENSCCRG00000071029	ENSCCRG00000054477	ENSCCRG00000067009
Goldfish	MODERN SPECIES	7	ptpn2a (ENSCARG00000018225)	cep76 (ENSCARG00000018265)	id4 (ENSCARG00000018837)	ncalda (ENSCARG00000018839)	grhl2a (ENSCARG00000018877)	ENSCARG00000019260	vamp1b (ENSCARG00000019268)	psmd4b (ENSCARG00000019291)	pip5k1ab (ENSCARG00000019548)	ENSCARG00000019645	ENSCARG00000019672	them4 (ENSCARG00000019698)	si:dkey-87o1.2 (ENSCARG00000019707)	zgc:174935 (ENSCARG00000019710)	ENSCARG00000019716	ENSCARG00000019731 ##22	TMEM238 (ENSCARG00000019750)	ccdc106a (ENSCARG00000019759)	ENSCARG00000019775	m6pr (ENSCARG00000019780)	casp2 (ENSCARG00000019787)	CLCN1 (ENSCARG00000019833)	FAM131B (ENSCARG00000020592)	zyx (ENSCARG00000020612)	emg1 (ENSCARG00000020632)	gtf3c6 (ENSCARG00000020639)	nop2 (ENSCARG00000020653)	nppcl (ENSCARG00000020925)	gapdh (ENSCARG00000020960)	opn9 (ENSCARG00000021241)	IFFO1 (ENSCARG00000021251)
Cyprininae	ANCESTRAL SPECIES	195	ENSGT00940000155788.k.d	ENSGT00940000160453.i	ENSGT00940000164382.b.b.a	ENSGT00530000064050.b.h.a	ENSGT00940000154703.j.b	ENSGT00390000006215.a.a	ENSGT00940000167484.a	ENSGT00940000160047.a	ENSGT00390000015721.b	ENSGT00620000088774.d	ENSGT00940000154371.a.b.a	ENSGT00940000153496.b.g ##22	ENSGT00940000160047.b	ENSGT00390000015721.a	ENSGT00620000088774.c	ENSGT00940000153496.b.h ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a.l	ENSGT00390000013183.d.b.a.k	ENSGT01030000234571.b.b.b.a.a.g.b	ENSGT00390000002109.b	ENSGT00940000156657.b	ENSGT00940000157383.g.b.a	ENSGT00950000183106.a.b.b.h	ENSGT00940000154273.a.g	ENSGT00940000156745.b.b
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00510000048187.lb	ENSGT00940000153393.A.r.a	ENSGT00940000154686.b.a	ENSGT00390000000781.j	ENSGT00940000162435.i	ENSGT00940000158862.h	ENSGT00940000155788.k.c	ENSGT00940000160453.j	ENSGT00940000164382.b.b.b	ENSGT00530000064050.b.h.b	ENSGT00940000154703.j.a	ENSGT00390000006215.a.b	ENSGT00940000167484.b	ENSGT00390000015721.a	ENSGT00620000088774.c	ENSGT00940000153496.b.h ##22	ENSGT00940000162720.b.b.a	ENSGT00390000013183.d.b.a.l	ENSGT01030000234571.b.b.b.a.a.g.a	ENSGT00390000002109.a	ENSGT00940000156657.a	ENSGT00940000157383.g.b.b	ENSGT00950000183106.a.b.b.g	ENSGT00940000168198.a	ENSGT00940000156745.b.a	ENSGT00390000000305.b	ENSGT00940000156745.b.b	ENSGT00390000000305.a	ENSGT00390000000510	ENSGT00940000161554.b	ENSGT00940000153298.i.a.l
Golden-line barbel	MODERN SPECIES	965	ENSSGRG00000033965	CEP192 (ENSSGRG00000033967)	SEH1L (ENSSGRG00000033968)	ptpn2a (ENSSGRG00000033970)	id4 (ENSSGRG00000033972)	ncalda (ENSSGRG00000033973)	grhl2a (ENSSGRG00000034010)	ENSSGRG00000034012	vamp1b (ENSSGRG00000034013)	psmd4b (ENSSGRG00000034014)	pip5k1ab (ENSSGRG00000034015)	ENSSGRG00000034027	ENSSGRG00000034028	si:dkey-87o1.2 (ENSSGRG00000034029)	ENSSGRG00000034031	ENSSGRG00000034033 ##22	TMEM238 (ENSSGRG00000034034)
Common carp reference	MODERN SPECIES	2	ENSCCRG00000070486	CEP76 (ENSCCRG00000081120)	id4 (ENSCCRG00000061985)	ncalda (ENSCCRG00000054987)	grhl2a (ENSCCRG00000031734)	vamp1b (ENSCCRG00000064605)	ENSCCRG00000031765	psmd4b (ENSCCRG00000034339)	pip5k1ab (ENSCCRG00000034298)	ENSCCRG00000035090	ENSCCRG00000053975	ENSCCRG00000076676	ENSCCRG00000074446	zgc:174935 (ENSCCRG00000060924)	si:dkey-87o1.2 (ENSCCRG00000053863)	ENSCCRG00000065601 ##22	ENSCCRG00000070058	ENSCCRG00000004317	ENSCCRG00000004286	ccdc106a (ENSCCRG00000004290)	m6pr (ENSCCRG00000055112)	casp2 (ENSCCRG00000004051)	ENSCCRG00000003542	FAM131B (ENSCCRG00000003503)	ENSCCRG00000072147	ENSCCRG00000004410	emg1 (ENSCCRG00000064393)	ENSCCRG00000075090	nop2 (ENSCCRG00000081383)	nppcl (ENSCCRG00000004477)	gapdh (ENSCCRG00000006135)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	35	SEH1L (ENSCARG00000018078)	ENSCARG00000018103	ptpn2a (ENSCARG00000018112)	id4 (ENSCARG00000018122)	ncalda (ENSCARG00000018135)	grhl2a (ENSCARG00000018145)	ENSCARG00000018183	psmd4b (ENSCARG00000018192)	pip5k1ab (ENSCARG00000018255)	ENSCARG00000018293	ENSCARG00000025810	ENSCARG00000025871	them4 (ENSCARG00000025875)	si:dkey-87o1.2 (ENSCARG00000025887)	zgc:174935 (ENSCARG00000025916)	ENSCARG00000025926 ##22	TMEM238 (ENSCARG00000025954)	ccdc106a (ENSCARG00000025965)	ENSCARG00000025991	m6pr (ENSCARG00000026036)	casp2 (ENSCARG00000026057)	CLCN1 (ENSCARG00000026125)	FAM131B (ENSCARG00000026569)	zyx (ENSCARG00000026589)	ENSCARG00000026608	emg1 (ENSCARG00000026628)	gtf3c6 (ENSCARG00000026634)	nop2 (ENSCARG00000026645)	nppcl (ENSCARG00000026742)	ENSCARG00000026752	gapdh (ENSCARG00000026847)
Goldfish	MODERN SPECIES	35	ENSCARG00000025378	sri (ENSCARG00000025361)	nt5c3a (ENSCARG00000025336)	ENSCARG00000025329	ENSCARG00000025326	ENSCARG00000025318	bmper (ENSCARG00000024848)	BBS9 (ENSCARG00000024661)	pmvk (ENSCARG00000024613)	ARHGEF2 (ENSCARG00000021741)	mbpb (ENSCARG00000021610)	ENSCARG00000021601	ZNF236 (ENSCARG00000021448)	ZNF407 (ENSCARG00000021405)	ENSCARG00000021402	ENSCARG00000021390 ##22	TMEM238 (ENSCARG00000021383)	ccdc106a (ENSCARG00000021373)	atp1a3b (ENSCARG00000019300)	rabac1 (ENSCARG00000019186)	dedd1 (ENSCARG00000019176)	setdb1b (ENSCARG00000018394)	ENSCARG00000018342	trim108 (ENSCARG00000018332)	cldc1 (ENSCARG00000018322)	si:ch211-154o6.3 (ENSCARG00000018236)	znf384b (ENSCARG00000018218)	gnl1 (ENSCARG00000018203)	DDR1 (ENSCARG00000018160)	flot1b (ENSCARG00000017760)	ENSCARG00000017720
Zebrafish	MODERN SPECIES	7	ENSDARG00000021787	sp8b (ENSDARG00000056666)	ENSDARG00000077384	DNAH11 (ENSDARG00000094282)	rapgef5b (ENSDARG00000074307)	ENSDARG00000094999	ENSDARG00000056750	slc6a19b (ENSDARG00000056719)	FHOD3 (ENSDARG00000061904)	rxrbb (ENSDARG00000002006)	ENSDARG00000035797	ENSDARG00000087195	them4 (ENSDARG00000061621)	si:dkey-87o1.2 (ENSDARG00000095796)	zgc:174935 (ENSDARG00000079255)	ENSDARG00000079530 ##22	ccdc106a (ENSDARG00000004211)	m6pr (ENSDARG00000018432)	casp2 (ENSDARG00000062052)	CLCN1 (ENSDARG00000012269)	FAM131B (ENSDARG00000070575)	zyx (ENSDARG00000075733)	ENSDARG00000076950	emg1 (ENSDARG00000056914)	gtf3c6 (ENSDARG00000043301)	nop2 (ENSDARG00000043304)	nppcl (ENSDARG00000043460)	gapdh (ENSDARG00000043457)	opn9 (ENSDARG00000104231)	IFFO1 (ENSDARG00000062108)	ENSDARG00000094366
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00940000160072	ENSGT00390000007165.a	ENSGT00940000155965	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b	ENSGT00940000159441.m	ENSGT00940000177093	ENSGT00940000153496.b ##22	ENSGT00940000162720.b.b	ENSGT00390000013183.d.b.a	ENSGT00390000007786.b	ENSGT01050000244893.c.b.a.g.a	ENSGT01050000244961.b.i	ENSGT00940000167373	ENSGT00940000159109.a	ENSGT00940000163128.b	ENSGT00950000182979.a.b.b.b.a.d	ENSGT00940000163608	ENSGT00940000154967.a.b.a.a	ENSGT00940000165399.a.a.a	ENSGT00530000064557.a	ENSGT00940000162254.b.b	ENSGT00940000157149
Asian bonytongue	MODERN SPECIES	9	cox6b2 (ENSSFOG00015001809)	rasip1 (ENSSFOG00015001722)	ENSSFOG00015031417	ENSSFOG00015001710	nat14 (ENSSFOG00015001700)	necap1 (ENSSFOG00015001649)	mfap5 (ENSSFOG00015033019)	sbk3 (ENSSFOG00015001621)	epn1a (ENSSFOG00015001569)	ENSSFOG00015001519	isoc2 (ENSSFOG00015001507)	atg12 (ENSSFOG00015001501)	si:ch211-232m10.6 (ENSSFOG00015001441)	RCVRN (ENSSFOG00015001423)	ENSSFOG00015029284	ENSSFOG00015001405 ##22	tmem238a (ENSSFOG00015001387)	ccdc106a (ENSSFOG00015032969)	cacng6a (ENSSFOG00015001290)	CACNG8 (ENSSFOG00015001256)	CACNG7 (ENSSFOG00015001206)	ENSSFOG00015001139	ENSSFOG00015001021	pitpnc1b (ENSSFOG00015000977)	ENSSFOG00015000936	ENSSFOG00015000933	ntd5 (ENSSFOG00015000882)	ENSSFOG00015030199	ENSSFOG00015000866	ENSSFOG00015027469	ube2s (ENSSFOG00015025781)
Spotted gar	MODERN SPECIES	665	trpv6 (ENSLOCG00000008244)	ENSLOCG00000008232	ENSLOCG00000008218	ENSLOCG00000008206	ENSLOCG00000008194	ENSLOCG00000008181	ENSLOCG00000008171	aicda (ENSLOCG00000008158)	ENSLOCG00000008144	ENSLOCG00000017864	ENSLOCG00000008134	atg12 (ENSLOCG00000008119)	rasip1 (ENSLOCG00000008104)	ENSLOCG00000008093	epn1a (ENSLOCG00000008077)	ENSLOCG00000008068 ##22	u2af2b (ENSLOCG00000008050)	ENSLOCG00000008035	rps9 (ENSLOCG00000008007)	mboat7 (ENSLOCG00000007984)	znf384b (ENSLOCG00000007968)	nudt8 (ENSLOCG00000007952)	ENSLOCG00000007937	si:ch211-154o6.3 (ENSLOCG00000007920)	ENSLOCG00000007900	cops7a (ENSLOCG00000007876)	tpi1b (ENSLOCG00000007859)	ENSLOCG00000007845	ENSLOCG00000007835	usp5 (ENSLOCG00000007807)	ENSLOCG00000007785
Reedfish	MODERN SPECIES	7	ZBTB25 (ENSECRG00000017246)	zbtb1 (ENSECRG00000017265)	PLCB2 (ENSECRG00000017301)	ANKRD63 (ENSECRG00000017445)	pak6b (ENSECRG00000017465)	BUB1B (ENSECRG00000017525)	zfyve19 (ENSECRG00000017607)	ppp1r14d (ENSECRG00000017636)	spint1b (ENSECRG00000017666)	ENSECRG00000017723	ENSECRG00000017797	ENSECRG00000017913	ENSECRG00000018169	ENSECRG00000018192	ENSECRG00000018212	ENSECRG00000018243 ##22	rasip1 (ENSECRG00000018311)	cox6b2 (ENSECRG00000018339)	ube2s (ENSECRG00000018360)	ENSECRG00000018379	tmem238a (ENSECRG00000018395)	ENSECRG00000018451	rcvrn3 (ENSECRG00000018518)	si:ch211-232m10.6 (ENSECRG00000018538)	atg12 (ENSECRG00000018558)	isoc2 (ENSECRG00000018575)	ENSECRG00000018600	u2af2b (ENSECRG00000018730)	ENSECRG00000018774	dbpa (ENSECRG00000018796)	ENSECRG00000018806
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153496.b ##22
Hagfish	MODERN SPECIES	504						syt9b (ENSEBUG00000003394)	ENSEBUG00000014956	hipk2 (ENSEBUG00000002902)	tbxas1 (ENSEBUG00000009344)	lrp5 (ENSEBUG00000010078)	ENSEBUG00000009510	PAX6 (ENSEBUG00000015684)	ENSEBUG00000000492	ENSEBUG00000012001	TEAD1 (ENSEBUG00000015798)	ENSEBUG00000002467 ##22	tefa (ENSEBUG00000003127)
Ciona	ANCESTRAL SPECIES	145															ENSGT00940000154634	ENSGT00940000153496 #22	ENSGT00940000167589.b	ENSGT00390000005197.a	ENSGT00950000182886.b.a	ENSGT00940000163963.l.a.a.b
Ciona savignyi	MODERN SPECIES	113	ENSCSAVG00000010566	ENSCSAVG00000010569	ENSCSAVG00000010572	ENSCSAVG00000010575	ENSCSAVG00000010578	ENSCSAVG00000010598	ENSCSAVG00000010600	ENSCSAVG00000010601	ENSCSAVG00000010603	ENSCSAVG00000010623	ENSCSAVG00000010631	ENSCSAVG00000010636	ENSCSAVG00000010637	ENSCSAVG00000010708	ENSCSAVG00000010709	ENSCSAVG00000010711 #22	ENSCSAVG00000010743	ENSCSAVG00000010744	ENSCSAVG00000010748	ENSCSAVG00000010749	ENSCSAVG00000010761	ENSCSAVG00000010783	ENSCSAVG00000010784	ENSCSAVG00000010785	ENSCSAVG00000010786	ENSCSAVG00000010788	ENSCSAVG00000010794	ENSCSAVG00000010865	ENSCSAVG00000010868	ENSCSAVG00000010869	ENSCSAVG00000010872
Ciona intestinalis	MODERN SPECIES	6	ENSCING00000001577	ENSCING00000001556	ENSCING00000011565	ENSCING00000020431	ENSCING00000020178	ENSCING00000001550	ENSCING00000001548	ENSCING00000021499	ENSCING00000024099	ENSCING00000011564	ENSCING00000011563	ENSCING00000018986	ENSCING00000020784	ENSCING00000011562	ENSCING00000001205	ENSCING00000000844 #22	ENSCING00000000841	su(h) (ENSCING00000000838)	ENSCING00000000832	ENSCING00000003977	ENSCING00000021992	s-themis-a (ENSCING00000018693)	ENSCING00000010799	ENSCING00000011560	ENSCING00000004008	ENSCING00000020559	ENSCING00000008472	ENSCING00000008467	ENSCING00000007500	ENSCING00000007499	ENSCING00000018870