Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000164840	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT01030000236091	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00950000186148	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000178333	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00840000130327	ENSGT00940000161487 #9	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b #37	ENSGT00530000063632.B
Myomorpha	ANCESTRAL SPECIES	28	ENSGT00840000130327	ENSGT00940000161487 #9	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.a.f ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.a ##37
Muroidea	ANCESTRAL SPECIES	10	ENSGT00940000161487 #9	ENSGT00940000164840	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.a.e.b.a ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.a ##37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000162330.i.a.b.a	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.b #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000162330.i.a.b.a	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.b #36
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00840000130327	ENSGT00940000161487 #9	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.b #36
Prairie vole	MODERN SPECIES	15	Clk4 (ENSMOCG00000022044) #7	ENSMOCG00000002350 #8	Zfp354a (ENSMOCG00000003692) #9	Prop1 (ENSMOCG00000021712) #10	Zfp354b (ENSMOCG00000019941) #11	Zfp2 (ENSMOCG00000022747) #12	Zfp454 (ENSMOCG00000020470) #13	Grm6 (ENSMOCG00000018877) #14	Zfp879 (ENSMOCG00000020947) #15	Zfp354c (ENSMOCG00000022297) #16	Adamts2 (ENSMOCG00000022331) #17	Rufy1 (ENSMOCG00000003244) #18	Hnrnph1 (ENSMOCG00000020579) #19	ENSMOCG00000011359 #20	Canx (ENSMOCG00000011838) #21	Maml1 (ENSMOCG00000001181) #22	ENSMOCG00000021052 #23	Mgat4b (ENSMOCG00000010677) #24	ENSMOCG00000002756 #25	ENSMOCG00000019043 #26	Mrnip (ENSMOCG00000014732) #27	Tbc1d9b (ENSMOCG00000017854) #28	Rnf130 (ENSMOCG00000022727) #29	Rasgef1c (ENSMOCG00000017254) #30	Mapk9 (ENSMOCG00000020546) #31	Gfpt2 (ENSMOCG00000022580) #32	Cnot6 (ENSMOCG00000021662) #33	Scgb3a1 (ENSMOCG00000018902) #34	Flt4 (ENSMOCG00000016968) #35	ENSMOCG00000002436 #36	ENSMOCG00000002339 #37
Northern American deer mouse	MODERN SPECIES	21	ENSPEMG00000025212	ENSPEMG00000026849	Or1ad6 (ENSPEMG00000029264)	Prop1 (ENSPEMG00000002087) #10	Zfp354b (ENSPEMG00000001281) #11	Zfp2 (ENSPEMG00000030164) #12	Zfp454 (ENSPEMG00000009308) #13	Grm6 (ENSPEMG00000012676) #14	Zfp879 (ENSPEMG00000010770) #15	Zfp354c (ENSPEMG00000014426) #16	Adamts2 (ENSPEMG00000018873) #17	Rufy1 (ENSPEMG00000009753) #18	Hnrnph1 (ENSPEMG00000018866) #19	ENSPEMG00000017877 #20	Canx (ENSPEMG00000005531) #21	Maml1 (ENSPEMG00000019224) #22	Ltc4s (ENSPEMG00000027708)	Mgat4b (ENSPEMG00000014635) #24	Sqstm1 (ENSPEMG00000019274)	Mrnip (ENSPEMG00000018478) #27	Tbc1d9b (ENSPEMG00000013746) #28	Rnf130 (ENSPEMG00000016730) #29	Rasgef1c (ENSPEMG00000018905) #30	Mapk9 (ENSPEMG00000016205) #31	Gfpt2 (ENSPEMG00000001870) #32	Cnot6 (ENSPEMG00000000627) #33	Scgb3a1 (ENSPEMG00000001932) #34	Flt4 (ENSPEMG00000013317) #35	ENSPEMG00000026395 ##37	ENSPEMG00000024369 ##37	ENSPEMG00000028647 ##37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000162330.i.a.b.a	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.b #36
Chinese hamster chok1gshd	MODERN SPECIES	229	Or1ad1 (ENSCGRG00001005982)	Or1ad6 (ENSCGRG00001007584)	Prop1 (ENSCGRG00001004549) #10	Zfp2 (ENSCGRG00001006658) #12	Zfp354b (ENSCGRG00001006089) #11	Zfp454 (ENSCGRG00001013939) #13	Grm6 (ENSCGRG00001015589) #14	Zfp879 (ENSCGRG00001013407) #15	Zfp354c (ENSCGRG00001011620) #16	Adamts2 (ENSCGRG00001017939) #17	ENSCGRG00001015852	Rufy1 (ENSCGRG00001013990) #18	Hnrnph1 (ENSCGRG00001013538) #19	Cby3 (ENSCGRG00001009348) #20	Canx (ENSCGRG00001017710) #21	Maml1 (ENSCGRG00001016447) #22	ENSCGRG00001013494 #23	Mgat4b (ENSCGRG00001006474) #24	ENSCGRG00001010734	Sqstm1 (ENSCGRG00001009697)	Mrnip (ENSCGRG00001004426) #27	Tbc1d9b (ENSCGRG00001020092) #28	Rnf130 (ENSCGRG00001021248) #29	Rasgef1c (ENSCGRG00001012629) #30	Mapk9 (ENSCGRG00001007000) #31	Gfpt2 (ENSCGRG00001020958) #32	Cnot6 (ENSCGRG00001011452) #33	Scgb3a1 (ENSCGRG00001005289) #34	Flt4 (ENSCGRG00001019633) #35	ENSCGRG00001001933 ##37	ENSCGRG00001015595 ##37
Golden Hamster	MODERN SPECIES	647	ENSMAUG00000008965	Clk4 (ENSMAUG00000006824) #7	Zfp354a (ENSMAUG00000000735) #9	Prop1 (ENSMAUG00000013991) #10	Zfp354b (ENSMAUG00000000163) #11	Zfp2 (ENSMAUG00000006975) #12	Zfp454 (ENSMAUG00000013415) #13	Grm6 (ENSMAUG00000017668) #14	Zfp879 (ENSMAUG00000000179) #15	Zfp354c (ENSMAUG00000001171) #16	Adamts2 (ENSMAUG00000000258) #17	Rufy1 (ENSMAUG00000010229) #18	Hnrnph1 (ENSMAUG00000012959) #19	ENSMAUG00000005355 #20	Canx (ENSMAUG00000007570) #21	Maml1 (ENSMAUG00000011048) #22	ENSMAUG00000004203 #23	Mgat4b (ENSMAUG00000000092) #24	Sqstm1 (ENSMAUG00000014382)	Mrnip (ENSMAUG00000016042) #27	Tbc1d9b (ENSMAUG00000014065) #28	Rnf130 (ENSMAUG00000015405) #29	Rasgef1c (ENSMAUG00000017005) #30	Mapk9 (ENSMAUG00000017175) #31	Gfpt2 (ENSMAUG00000000755) #32	Cnot6 (ENSMAUG00000019798) #33	Scgb3a1 (ENSMAUG00000012240) #34	Flt4 (ENSMAUG00000014271) #35	ENSMAUG00000018285 #36	ENSMAUG00000016974 #37	Or2y16 (ENSMAUG00000016979) ##37
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000162330.i.a.b.a	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.f ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.e ##37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000162330.i.b	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.f ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.e ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b.a ##37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00860000136315	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00900000143680	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.f ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.e ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b.a ##37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00860000136315	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00900000143680	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.f ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.a.e ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b.a ##37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000162330.i.a.a	ENSGT00940000162330.j	ENSGT00940000162292 #10	ENSGT00860000136315	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00900000143680	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.a.a.b.b ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.b.a.b ##37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.a.e.b.b ##37
spretus	MODERN SPECIES	2	Or1ad1 (MGP_SPRETEiJ_G0017147)	Or1ad6 (MGP_SPRETEiJ_G0017146)	Prop1 (MGP_SPRETEiJ_G0017145) #10	4933414I15Rik (MGP_SPRETEiJ_G0017144)	Zfp354b (MGP_SPRETEiJ_G0017143) #11	Zfp2 (MGP_SPRETEiJ_G0017142) #12	Zfp454 (MGP_SPRETEiJ_G0017141) #13	Grm6 (MGP_SPRETEiJ_G0017140) #14	Zfp879 (MGP_SPRETEiJ_G0017139) #15	Zfp354c (MGP_SPRETEiJ_G0017138) #16	Adamts2 (MGP_SPRETEiJ_G0017137) #17	Rufy1 (MGP_SPRETEiJ_G0017136) #18	MGP_SPRETEiJ_G0017135 #19	MGP_SPRETEiJ_G0017134 #20	Canx (MGP_SPRETEiJ_G0017133) #21	Maml1 (MGP_SPRETEiJ_G0017132) #22	Ltc4s (MGP_SPRETEiJ_G0017131)	Mgat4b (MGP_SPRETEiJ_G0017130) #24	Sqstm1 (MGP_SPRETEiJ_G0017129)	Mrnip (MGP_SPRETEiJ_G0017128) #27	Tbc1d9b (MGP_SPRETEiJ_G0017127) #28	Rnf130 (MGP_SPRETEiJ_G0017126) #29	Rasgef1c (MGP_SPRETEiJ_G0017125) #30	Mapk9 (MGP_SPRETEiJ_G0017124) #31	Gfpt2 (MGP_SPRETEiJ_G0017123) #32	Cnot6 (MGP_SPRETEiJ_G0017122) #33	Scgb3a1 (MGP_SPRETEiJ_G0017121) #34	Flt4 (MGP_SPRETEiJ_G0017120) #35	MGP_SPRETEiJ_G0017119 ##37	MGP_SPRETEiJ_G0017118 ##37	MGP_SPRETEiJ_G0017117 ##37
Steppe mouse	MODERN SPECIES	2758	Or1ad1 (ENSMSIG00000010102)	Or1ad6 (ENSMSIG00000010084)	Prop1 (ENSMSIG00000010077) #10	4933414I15Rik (ENSMSIG00000010069)	Zfp354b (ENSMSIG00000010046) #11	Zfp2 (ENSMSIG00000010031) #12	Zfp454 (ENSMSIG00000010013) #13	Grm6 (ENSMSIG00000009979) #14	Zfp879 (ENSMSIG00000009906) #15	Zfp354c (ENSMSIG00000009873) #16	Adamts2 (ENSMSIG00000009833) #17	Rufy1 (ENSMSIG00000009787) #18	Hnrnph1 (ENSMSIG00000009749) #19	ENSMSIG00000009741 #20	Canx (ENSMSIG00000009706) #21	Maml1 (ENSMSIG00000009693) #22	Ltc4s (ENSMSIG00000009669)	Mgat4b (ENSMSIG00000009625) #24	Sqstm1 (ENSMSIG00000009550)	Mrnip (ENSMSIG00000009547) #27
Mouse	MODERN SPECIES	2	Or1ad1 (ENSMUSG00000061952)	Or1ad6 (ENSMUSG00000050343)	Prop1 (ENSMUSG00000044542) #10	4933414I15Rik (ENSMUSG00000072983)	Zfp354b (ENSMUSG00000020335) #11	Zfp2 (ENSMUSG00000049321) #12	Zfp454 (ENSMUSG00000048728) #13	Grm6 (ENSMUSG00000000617) #14	Zfp879 (ENSMUSG00000044296) #15	Zfp354c (ENSMUSG00000044807) #16	Adamts2 (ENSMUSG00000036545) #17	Rufy1 (ENSMUSG00000020375) #18	Hnrnph1 (ENSMUSG00000007850) #19	Cby3 (ENSMUSG00000050087) #20	Canx (ENSMUSG00000020368) #21	Maml1 (ENSMUSG00000050567) #22	Ltc4s (ENSMUSG00000020377)	Mgat4b (ENSMUSG00000036620) #24	Sqstm1 (ENSMUSG00000015837)	Mrnip (ENSMUSG00000020381) #27	Tbc1d9b (ENSMUSG00000036644) #28	Rnf130 (ENSMUSG00000020376) #29	Rasgef1c (ENSMUSG00000020374) #30	Mapk9 (ENSMUSG00000020366) #31	Gfpt2 (ENSMUSG00000020363) #32	Cnot6 (ENSMUSG00000020362) #33	Scgb3a1 (ENSMUSG00000064057) #34	Flt4 (ENSMUSG00000020357) #35	Or2y10 (ENSMUSG00000107645) ##37	Or2y11 (ENSMUSG00000095187) ##37	Or2y12 (ENSMUSG00000063827) ##37
Ryukyu mouse	MODERN SPECIES	2	Or1ad6 (MGP_CAROLIEiJ_G0016302)	Prop1 (MGP_CAROLIEiJ_G0016301) #10	4933414I15Rik (MGP_CAROLIEiJ_G0016300)	Zfp354b (MGP_CAROLIEiJ_G0016299) #11	Zfp2 (MGP_CAROLIEiJ_G0016298) #12	Zfp454 (MGP_CAROLIEiJ_G0016297) #13	Grm6 (MGP_CAROLIEiJ_G0016296) #14	Zfp879 (MGP_CAROLIEiJ_G0016295) #15	Zfp354c (MGP_CAROLIEiJ_G0016294) #16	Adamts2 (MGP_CAROLIEiJ_G0016293) #17	Rufy1 (MGP_CAROLIEiJ_G0016292) #18	MGP_CAROLIEiJ_G0016291 #19	MGP_CAROLIEiJ_G0016290 #20	MGP_CAROLIEiJ_G0016289	Canx (MGP_CAROLIEiJ_G0016288) #21	Maml1 (MGP_CAROLIEiJ_G0016287) #22	Ltc4s (MGP_CAROLIEiJ_G0016286)	Mgat4b (MGP_CAROLIEiJ_G0016285) #24	Sqstm1 (MGP_CAROLIEiJ_G0016284)	Mrnip (MGP_CAROLIEiJ_G0016283) #27	Tbc1d9b (MGP_CAROLIEiJ_G0016282) #28	Rnf130 (MGP_CAROLIEiJ_G0016281) #29	Rasgef1c (MGP_CAROLIEiJ_G0016280) #30	Mapk9 (MGP_CAROLIEiJ_G0016279) #31	Gfpt2 (MGP_CAROLIEiJ_G0016278) #32	Cnot6 (MGP_CAROLIEiJ_G0016277) #33	Scgb3a1 (MGP_CAROLIEiJ_G0016276) #34	Flt4 (MGP_CAROLIEiJ_G0016275) #35	MGP_CAROLIEiJ_G0016274 ##37	MGP_CAROLIEiJ_G0016273 ##37	MGP_CAROLIEiJ_G0016272 ##37
Shrew mouse	MODERN SPECIES	5	Or1ad8 (MGP_PahariEiJ_G0017439)	Or1ad1 (MGP_PahariEiJ_G0017438)	Or1ad6 (MGP_PahariEiJ_G0017437)	Prop1 (MGP_PahariEiJ_G0017436) #10	Zfp354b (MGP_PahariEiJ_G0017434) #11	Zfp2 (MGP_PahariEiJ_G0017433) #12	Zfp454 (MGP_PahariEiJ_G0017432) #13	Grm6 (MGP_PahariEiJ_G0017431) #14	Zfp879 (MGP_PahariEiJ_G0017430) #15	Zfp354c (MGP_PahariEiJ_G0017429) #16	Adamts2 (MGP_PahariEiJ_G0017428) #17	Rufy1 (MGP_PahariEiJ_G0017427) #18	Hnrnph1 (MGP_PahariEiJ_G0017426) #19	Cby3 (MGP_PahariEiJ_G0017425) #20	Canx (MGP_PahariEiJ_G0017424) #21	Maml1 (MGP_PahariEiJ_G0017423) #22	MGP_PahariEiJ_G0017422 #23	Mgat4b (MGP_PahariEiJ_G0017421) #24	Sqstm1 (MGP_PahariEiJ_G0017420)	Mrnip (MGP_PahariEiJ_G0017419) #27	Tbc1d9b (MGP_PahariEiJ_G0017418) #28	Rnf130 (MGP_PahariEiJ_G0017417) #29	Rasgef1c (MGP_PahariEiJ_G0017416) #30	Mapk9 (MGP_PahariEiJ_G0017415) #31	Gfpt2 (MGP_PahariEiJ_G0017414) #32	Cnot6 (MGP_PahariEiJ_G0017413) #33	Scgb3a1 (MGP_PahariEiJ_G0017412) #34	Flt4 (MGP_PahariEiJ_G0017411) #35	MGP_PahariEiJ_G0017410 ##37	MGP_PahariEiJ_G0017409 ##37	Or2y15 (MGP_PahariEiJ_G0017408) ##37
Rat	MODERN SPECIES	1	Or1ad5 (ENSRNOG00000029930)	Or1ad1 (ENSRNOG00000063756)	Or1ad6 (ENSRNOG00000003668)	Prop1 (ENSRNOG00000003671) #10	ENSRNOG00000067059	Zfp2 (ENSRNOG00000030750) #12	Znf454 (ENSRNOG00000029678) #11	Grm6 (ENSRNOG00000000233) #14	Zfp879 (ENSRNOG00000030517) #15	Zfp354c (ENSRNOG00000029205) #16	Adamts2 (ENSRNOG00000061484) #17	Rufy1 (ENSRNOG00000003536) #18	Hnrnph1 (ENSRNOG00000003399) #19	Cby3 (ENSRNOG00000066223) #20	Canx (ENSRNOG00000003343) #21	Maml1 (ENSRNOG00000003268) #22	Ltc4s (ENSRNOG00000003244)	Mgat4b (ENSRNOG00000003235) #24	Sqstm1 (ENSRNOG00000003147)	Mrnip (ENSRNOG00000003068) #27	Tbc1d9b (ENSRNOG00000003050) #28	Rnf130 (ENSRNOG00000046330) #29	Rasgef1c (ENSRNOG00000003005) #30	Mapk9 (ENSRNOG00000002823) #31	Gfpt2 (ENSRNOG00000002810) #32	Cnot6 (ENSRNOG00000054891) #33	Scgb3a1 (ENSRNOG00000002718) #34	Flt4 (ENSRNOG00000002511) #35	LOC102555091 (ENSRNOG00000068579)	Or2y11 (ENSRNOG00000065754) ##37	Or2y12 (ENSRNOG00000070927) ##37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1624					Prop1 (ENSNGAG00000016946) #10	Zfp2 (ENSNGAG00000015033) #12	Zfp454 (ENSNGAG00000001170) #13	Grm6 (ENSNGAG00000000051) #14	Zfp879 (ENSNGAG00000010850) #15	Zfp354c (ENSNGAG00000013055) #16	Adamts2 (ENSNGAG00000007774) #17	Rufy1 (ENSNGAG00000014023) #18	Hnrnph1 (ENSNGAG00000014666) #19	ENSNGAG00000019073 #20	Canx (ENSNGAG00000009718) #21	Maml1 (ENSNGAG00000007418) #22	ENSNGAG00000019905 #23	Mgat4b (ENSNGAG00000011567) #24	Sqstm1 (ENSNGAG00000000111)	Mrnip (ENSNGAG00000019013) #27	Tbc1d9b (ENSNGAG00000020655) #28	ENSNGAG00000013038	Rnf130 (ENSNGAG00000000237) #29	Rasgef1c (ENSNGAG00000020883) #30	Mapk9 (ENSNGAG00000019965) #31	Gfpt2 (ENSNGAG00000014610) #32	Cnot6 (ENSNGAG00000008269) #33	Scgb3a1 (ENSNGAG00000011521) #34	Flt4 (ENSNGAG00000013547) #35
Lesser Egyptian jerboa	MODERN SPECIES	133										Adamts2 (ENSJJAG00000001682) #17	ENSJJAG00000010190	Rufy1 (ENSJJAG00000013513) #18	Hnrnph1 (ENSJJAG00000016203) #19	ENSJJAG00000014052 #20	Canx (ENSJJAG00000022784) #21	Maml1 (ENSJJAG00000023847) #22	ENSJJAG00000019535 #23	Mgat4b (ENSJJAG00000021000) #24	ENSJJAG00000012040	Mrnip (ENSJJAG00000010968) #27	Tbc1d9b (ENSJJAG00000013138) #28	ENSJJAG00000013685	Rnf130 (ENSJJAG00000014438) #29	Rasgef1c (ENSJJAG00000016338) #30	Mapk9 (ENSJJAG00000012308) #31	Gfpt2 (ENSJJAG00000014420) #32	Cnot6 (ENSJJAG00000012296) #33	Scgb3a1 (ENSJJAG00000011541) #34	Flt4 (ENSJJAG00000017737) #35	Sparc (ENSJJAG00000003597)	Fat2 (ENSJJAG00000019929)
Kangaroo rat	MODERN SPECIES	454	Phykpl (ENSDORG00000011023)	Col23a1 (ENSDORG00000011025)	ENSDORG00000024543 #7	Clk4 (ENSDORG00000009760) #7	Zfp354a (ENSDORG00000009396) #9	Prop1 (ENSDORG00000009397) #10	Zfp454 (ENSDORG00000029196) #13	Grm6 (ENSDORG00000029560) #14	Zfp2 (ENSDORG00000005936) #12	Zfp354c (ENSDORG00000015602) #16	Adamts2 (ENSDORG00000015603) #17	Rufy1 (ENSDORG00000005452) #18	Hnrnph1 (ENSDORG00000005453) #19	ENSDORG00000024643 #20	Canx (ENSDORG00000002108) #21	Maml1 (ENSDORG00000023567) #22	ENSDORG00000025410 #23	Mgat4b (ENSDORG00000007019) #24	Sqstm1 (ENSDORG00000014852)	Tbc1d9b (ENSDORG00000014854) #28	Rnf130 (ENSDORG00000012990) #29	Rasgef1c (ENSDORG00000003918) #30	Mapk9 (ENSDORG00000003921) #31	Gfpt2 (ENSDORG00000003922) #32	Cnot6 (ENSDORG00000001708) #33	Scgb3a1 (ENSDORG00000027422) #34	Flt4 (ENSDORG00000012877) #35	ENSDORG00000024367 ##37	ENSDORG00000024307 ##37	ENSDORG00000023565 ##37	ENSDORG00000028273 ##37
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000161487 #9	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT01030000236091	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00950000186148	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000178333	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029
Sciuridae	ANCESTRAL SPECIES	33	ENSGT00940000160245 #7	ENSGT00940000161487 #9	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT01030000236091	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00950000186148	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000178333	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029
Marmotini	ANCESTRAL SPECIES	90		ENSGT00940000162327	ENSGT00940000163610	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00950000186148	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.a.d.b.a ##37
Marmotini_b	ANCESTRAL SPECIES	162		ENSGT00940000162327	ENSGT00940000163610	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.a.d.b.a ##37
Arctic ground squirrel	MODERN SPECIES	533															CANX (ENSUPAG00010012868) #21	MAML1 (ENSUPAG00010012921) #22	LTC4S (ENSUPAG00010012940) #23	MGAT4B (ENSUPAG00010012951) #24	SQSTM1 (ENSUPAG00010012981)	MRNIP (ENSUPAG00010013026) #27	TBC1D9B (ENSUPAG00010013038) #28	RNF130 (ENSUPAG00010013174) #29	RASGEF1C (ENSUPAG00010013202) #30	MAPK9 (ENSUPAG00010013292) #31	GFPT2 (ENSUPAG00010013498) #32	ENSUPAG00010013530	CNOT6 (ENSUPAG00010013547) #33	SCGB3A1 (ENSUPAG00010013577) #34	FLT4 (ENSUPAG00010013592) #35	ENSUPAG00010013659	ENSUPAG00010013751 ##37
Squirrel	MODERN SPECIES	339		ENSSTOG00000001898	ENSSTOG00000027829	PROP1 (ENSSTOG00000013571) #10	ZNF354B (ENSSTOG00000008858) #11	ZFP2 (ENSSTOG00000034472) #12	ZNF454 (ENSSTOG00000029783) #13	GRM6 (ENSSTOG00000021282) #14	ZNF879 (ENSSTOG00000033666) #15	ZNF354C (ENSSTOG00000023695) #16	ADAMTS2 (ENSSTOG00000004811) #17	RUFY1 (ENSSTOG00000016368) #18	HNRNPH1 (ENSSTOG00000016376) #19	CBY3 (ENSSTOG00000013625) #20	CANX (ENSSTOG00000013636) #21	MAML1 (ENSSTOG00000013644) #22	LTC4S (ENSSTOG00000028546) #23	MGAT4B (ENSSTOG00000015692) #24	SQSTM1 (ENSSTOG00000013654)	ENSSTOG00000013660 #27	TBC1D9B (ENSSTOG00000013665) #28	RNF130 (ENSSTOG00000013681) #29	RASGEF1C (ENSSTOG00000002744) #30	MAPK9 (ENSSTOG00000002755) #31	GFPT2 (ENSSTOG00000002766) #32	ENSSTOG00000026322	CNOT6 (ENSSTOG00000002803) #33	SCGB3A1 (ENSSTOG00000029379) #34	FLT4 (ENSSTOG00000009900) #35	ENSSTOG00000024162 ##37	ENSSTOG00000023199 ##37
Alpin marmot	MODERN SPECIES	119		PGBD2 (ENSMMMG00000010992)	ENSMMMG00000010966	PROP1 (ENSMMMG00000010955) #10	ZNF354B (ENSMMMG00000010934) #11	ZFP2 (ENSMMMG00000010928) #12	ZNF454 (ENSMMMG00000010924) #13	GRM6 (ENSMMMG00000010868) #14	ZNF879 (ENSMMMG00000010856) #15	ZNF354C (ENSMMMG00000010838) #16	ADAMTS2 (ENSMMMG00000010786) #17	RUFY1 (ENSMMMG00000010729) #18	HNRNPH1 (ENSMMMG00000010637) #19	ENSMMMG00000010630 #20	CANX (ENSMMMG00000010583) #21	MAML1 (ENSMMMG00000010563) #22	LTC4S (ENSMMMG00000010544) #23	MGAT4B (ENSMMMG00000010531) #24	SQSTM1 (ENSMMMG00000010495)	ENSMMMG00000010488	ENSMMMG00000010477 #27	ENSMMMG00000010472	TBC1D9B (ENSMMMG00000010464) #28	RNF130 (ENSMMMG00000010453) #29	RASGEF1C (ENSMMMG00000010333) #30	MAPK9 (ENSMMMG00000009979) #31	GFPT2 (ENSMMMG00000009950) #32	ENSMMMG00000009922	ENSMMMG00000009920	CNOT6 (ENSMMMG00000009896) #33	SCGB3A1 (ENSMMMG00000009881) #34
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005003942	ENSSVLG00005003957	PROP1 (ENSSVLG00005003982) #10	ZNF354B (ENSSVLG00005003997) #11	ZFP2 (ENSSVLG00005004011) #12	ZNF454 (ENSSVLG00005004024) #13	GRM6 (ENSSVLG00005004048) #14	ZNF879 (ENSSVLG00005004068) #15	ZNF354C (ENSSVLG00005004083) #16	ADAMTS2 (ENSSVLG00005004107) #17	RUFY1 (ENSSVLG00005004214) #18	HNRNPH1 (ENSSVLG00005004313) #19	CBY3 (ENSSVLG00005004437) #20	CANX (ENSSVLG00005004460) #21	ENSSVLG00005004484	MAML1 (ENSSVLG00005004507) #22	LTC4S (ENSSVLG00005004534) #23	MGAT4B (ENSSVLG00005004599) #24	SQSTM1 (ENSSVLG00005004679)	MRNIP (ENSSVLG00005004714) #27	TBC1D9B (ENSSVLG00005004773) #28	ENSSVLG00005004884	RNF130 (ENSSVLG00005004920) #29	RASGEF1C (ENSSVLG00005004985) #30	MAPK9 (ENSSVLG00005005069) #31	ENSSVLG00005005097 #31	GFPT2 (ENSSVLG00005005125) #32	CNOT6 (ENSSVLG00005005179) #33	SCGB3A1 (ENSSVLG00005005231) #34	ENSSVLG00005005257	ENSSVLG00005005292
Hystricomorpha	ANCESTRAL SPECIES	30	ENSGT00940000160245 #7	ENSGT00940000161487 #9	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00940000153137.a.b.a #20	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00390000006124 #27	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35	ENSGT00940000163029
Hystricomorpha_a	ANCESTRAL SPECIES	74	ENSGT00940000162238	ENSGT00940000160245 #7	ENSGT00940000161487 #9	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35
Hystricomorpha_b	ANCESTRAL SPECIES	19	ENSGT00940000162238	ENSGT00940000160245 #7	ENSGT00940000161487 #9	ENSGT00940000162330	ENSGT00940000162292 #10	ENSGT00940000162570 #11	ENSGT00940000162743 #12	ENSGT00940000162181 #13	ENSGT01030000234648.a.b.a.b #14	ENSGT00940000162816 #15	ENSGT00940000162715 #16	ENSGT00940000156647 #17	ENSGT00940000158334 #18	ENSGT00940000153503.a.a #19	ENSGT00950000182915.a.a.a #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781	ENSGT00940000158554 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #31	ENSGT00940000156413 #32	ENSGT00940000158978 #33	ENSGT00420000029848.A #34	ENSGT00940000159358 #35
Long-tailed chinchilla	MODERN SPECIES	115	CLK4 (ENSCLAG00000013604) #7	ZNF354A (ENSCLAG00000014648) #9	ENSCLAG00000010643	ENSCLAG00000017710	ZNF354B (ENSCLAG00000013514) #11	ZFP2 (ENSCLAG00000011174) #12	ENSCLAG00000010435 #13	ENSCLAG00000010195 #13	GRM6 (ENSCLAG00000015195) #14	ZNF879 (ENSCLAG00000013696) #15	ZNF354C (ENSCLAG00000012651) #16	ADAMTS2 (ENSCLAG00000012213) #17	RUFY1 (ENSCLAG00000012650) #18	HNRNPH1 (ENSCLAG00000013617) #19	CANX (ENSCLAG00000012635) #21	MAML1 (ENSCLAG00000012443) #22	MGAT4B (ENSCLAG00000013986) #24	SQSTM1 (ENSCLAG00000014864)	TBC1D9B (ENSCLAG00000010716) #28	RNF130 (ENSCLAG00000012509) #29	RASGEF1C (ENSCLAG00000010592) #30	MAPK9 (ENSCLAG00000011477) #31	GFPT2 (ENSCLAG00000011097) #32	CNOT6 (ENSCLAG00000010489) #33	SCGB3A1 (ENSCLAG00000017376) #34	FLT4 (ENSCLAG00000012174) #35
Degu	MODERN SPECIES	70	ENSODEG00000007622	CLK4 (ENSODEG00000006750) #7	ZNF354A (ENSODEG00000008278) #9	ENSODEG00000006751	ENSODEG00000007859	PROP1 (ENSODEG00000007660) #10	ZNF354B (ENSODEG00000007968) #11	ZNF454 (ENSODEG00000007335) #13	GRM6 (ENSODEG00000009985) #14	ZNF879 (ENSODEG00000007967) #15	ZNF354C (ENSODEG00000007509) #16	ADAMTS2 (ENSODEG00000010343) #17	RUFY1 (ENSODEG00000006045) #18	ENSODEG00000007058 #19	CANX (ENSODEG00000007247) #21	MAML1 (ENSODEG00000007120) #22	LTC4S (ENSODEG00000006956) #23	MGAT4B (ENSODEG00000006661) #24	SQSTM1 (ENSODEG00000007536)	TBC1D9B (ENSODEG00000007268) #28	RNF130 (ENSODEG00000006815) #29	ENSODEG00000006074 #31	GFPT2 (ENSODEG00000007246) #32	ENSODEG00000006939	CNOT6 (ENSODEG00000007041) #33	SCGB3A1 (ENSODEG00000006628) #34	FLT4 (ENSODEG00000006420) #35
Guinea pig	MODERN SPECIES	176	ZNF354A (ENSCPOG00000034791) #9	ENSCPOG00000037406	ENSCPOG00000025194	PROP1 (ENSCPOG00000020734) #10	ZNF354B (ENSCPOG00000002227) #11	ZFP2 (ENSCPOG00000031347) #12	ENSCPOG00000033835 #13	ENSCPOG00000035563 #13	GRM6 (ENSCPOG00000001162) #14	ZNF879 (ENSCPOG00000040313) #15	ZNF354C (ENSCPOG00000038581) #16	ADAMTS2 (ENSCPOG00000001168) #17	RUFY1 (ENSCPOG00000012088) #18	ENSCPOG00000001485 #19	CANX (ENSCPOG00000003259) #21	MAML1 (ENSCPOG00000009382) #22	LTC4S (ENSCPOG00000021312) #23	MGAT4B (ENSCPOG00000005836) #24	SQSTM1 (ENSCPOG00000026534)	TBC1D9B (ENSCPOG00000011294) #28	ENSCPOG00000015076	RNF130 (ENSCPOG00000013821) #29
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000045105	ENSHGLG00000032445	ENSHGLG00000009648 #10	ENSHGLG00000034750	ENSHGLG00000033241	ENSHGLG00000047455 #11	ZFP2 (ENSHGLG00000033138) #12	GRM6 (ENSHGLG00000013576) #14	ZNF879 (ENSHGLG00000013266) #15	ENSHGLG00000019454 #16	ADAMTS2 (ENSHGLG00000017531) #17	RUFY1 (ENSHGLG00000017638) #18	HNRNPH1 (ENSHGLG00000018565) #19	ENSHGLG00000014040 #20	ENSHGLG00000014507 #21	MAML1 (ENSHGLG00000007422) #22	LTC4S (ENSHGLG00000008079) #23	ENSHGLG00000010792 #24	SQSTM1 (ENSHGLG00000012249)	ENSHGLG00000034162 #27	TBC1D9B (ENSHGLG00000014248) #28	RNF130 (ENSHGLG00000019044) #29	ENSHGLG00000016658	RASGEF1C (ENSHGLG00000018254) #30	ENSHGLG00000039343	MAPK9 (ENSHGLG00000018063) #31	GFPT2 (ENSHGLG00000018020) #32	CNOT6 (ENSHGLG00000017756) #33	ENSHGLG00000015320 #34	ENSHGLG00000017837 #35	ENSHGLG00000019068