Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000161487	ENSGT00940000162330 #7	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00940000153137.a.b.a #19	ENSGT00950000182915.a.a.a #20	ENSGT01030000236091 #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00950000186148	ENSGT00390000006124 #26	ENSGT00940000158554 #27	ENSGT00940000178333 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358	ENSGT00940000163029 #37
Sciuridae	ANCESTRAL SPECIES	33	ENSGT00940000160245	ENSGT00940000161487	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00940000153137.a.b.a #19	ENSGT00950000182915.a.a.a #20	ENSGT01030000236091 #21	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00950000186148	ENSGT00390000006124 #26	ENSGT00940000158554 #27	ENSGT00940000178333 #28	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358	ENSGT00940000163029 #37
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005003942 #7	ENSSVLG00005003957 #8	PROP1 (ENSSVLG00005003982) #9	ZNF354B (ENSSVLG00005003997) #10	ZFP2 (ENSSVLG00005004011) #11	ZNF454 (ENSSVLG00005004024) #12	GRM6 (ENSSVLG00005004048) #13	ZNF879 (ENSSVLG00005004068) #14	ZNF354C (ENSSVLG00005004083) #15	ADAMTS2 (ENSSVLG00005004107) #16	RUFY1 (ENSSVLG00005004214) #17	HNRNPH1 (ENSSVLG00005004313) #18	CBY3 (ENSSVLG00005004437) #19	CANX (ENSSVLG00005004460) #20	ENSSVLG00005004484 #21	MAML1 (ENSSVLG00005004507) #22	LTC4S (ENSSVLG00005004534) #23	MGAT4B (ENSSVLG00005004599) #24	SQSTM1 (ENSSVLG00005004679) #25	MRNIP (ENSSVLG00005004714) #26	TBC1D9B (ENSSVLG00005004773) #27	ENSSVLG00005004884 #28	RNF130 (ENSSVLG00005004920) #29	RASGEF1C (ENSSVLG00005004985) #30	MAPK9 (ENSSVLG00005005069) #31	ENSSVLG00005005097 #32	GFPT2 (ENSSVLG00005005125) #33	CNOT6 (ENSSVLG00005005179) #34	SCGB3A1 (ENSSVLG00005005231) #35	ENSSVLG00005005257 #36	ENSSVLG00005005292 #37
Marmotini	ANCESTRAL SPECIES	90		ENSGT00940000162327	ENSGT00940000163610	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00940000153137.a.b.a #19	ENSGT00950000182915.a.a.a #20	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00950000186148	ENSGT00390000006124 #26	ENSGT00940000158554 #27	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358	ENSGT00940000163029 #37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.a.d.b.a
Marmotini_b	ANCESTRAL SPECIES	162		ENSGT00940000162327	ENSGT00940000163610	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00940000153137.a.b.a #19	ENSGT00950000182915.a.a.a #20	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00390000006124 #26	ENSGT00940000158554 #27	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358	ENSGT00940000163029 #37	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b.f.b.a.a.d.b.a
Arctic ground squirrel	MODERN SPECIES	533															CANX (ENSUPAG00010012868) #20	MAML1 (ENSUPAG00010012921) #22	LTC4S (ENSUPAG00010012940) #23	MGAT4B (ENSUPAG00010012951) #24	SQSTM1 (ENSUPAG00010012981) #25	MRNIP (ENSUPAG00010013026) #26	TBC1D9B (ENSUPAG00010013038) #27	RNF130 (ENSUPAG00010013174) #29	RASGEF1C (ENSUPAG00010013202) #30	MAPK9 (ENSUPAG00010013292) #32	GFPT2 (ENSUPAG00010013498) #33	ENSUPAG00010013530	CNOT6 (ENSUPAG00010013547) #34	SCGB3A1 (ENSUPAG00010013577) #35	FLT4 (ENSUPAG00010013592)	ENSUPAG00010013659 #37	ENSUPAG00010013751
Squirrel	MODERN SPECIES	339		ENSSTOG00000001898	ENSSTOG00000027829	PROP1 (ENSSTOG00000013571) #9	ZNF354B (ENSSTOG00000008858) #10	ZFP2 (ENSSTOG00000034472) #11	ZNF454 (ENSSTOG00000029783) #12	GRM6 (ENSSTOG00000021282) #13	ZNF879 (ENSSTOG00000033666) #14	ZNF354C (ENSSTOG00000023695) #15	ADAMTS2 (ENSSTOG00000004811) #16	RUFY1 (ENSSTOG00000016368) #17	HNRNPH1 (ENSSTOG00000016376) #18	CBY3 (ENSSTOG00000013625) #19	CANX (ENSSTOG00000013636) #20	MAML1 (ENSSTOG00000013644) #22	LTC4S (ENSSTOG00000028546) #23	MGAT4B (ENSSTOG00000015692) #24	SQSTM1 (ENSSTOG00000013654) #25	ENSSTOG00000013660 #26	TBC1D9B (ENSSTOG00000013665) #27	RNF130 (ENSSTOG00000013681) #29	RASGEF1C (ENSSTOG00000002744) #30	MAPK9 (ENSSTOG00000002755) #32	GFPT2 (ENSSTOG00000002766) #33	ENSSTOG00000026322	CNOT6 (ENSSTOG00000002803) #34	SCGB3A1 (ENSSTOG00000029379) #35	FLT4 (ENSSTOG00000009900)	ENSSTOG00000024162	ENSSTOG00000023199
Alpin marmot	MODERN SPECIES	119		PGBD2 (ENSMMMG00000010992)	ENSMMMG00000010966	PROP1 (ENSMMMG00000010955) #9	ZNF354B (ENSMMMG00000010934) #10	ZFP2 (ENSMMMG00000010928) #11	ZNF454 (ENSMMMG00000010924) #12	GRM6 (ENSMMMG00000010868) #13	ZNF879 (ENSMMMG00000010856) #14	ZNF354C (ENSMMMG00000010838) #15	ADAMTS2 (ENSMMMG00000010786) #16	RUFY1 (ENSMMMG00000010729) #17	HNRNPH1 (ENSMMMG00000010637) #18	ENSMMMG00000010630 #19	CANX (ENSMMMG00000010583) #20	MAML1 (ENSMMMG00000010563) #22	LTC4S (ENSMMMG00000010544) #23	MGAT4B (ENSMMMG00000010531) #24	SQSTM1 (ENSMMMG00000010495) #25	ENSMMMG00000010488	ENSMMMG00000010477 #26	ENSMMMG00000010472 #28	TBC1D9B (ENSMMMG00000010464) #27	RNF130 (ENSMMMG00000010453) #29	RASGEF1C (ENSMMMG00000010333) #30	MAPK9 (ENSMMMG00000009979) #32	GFPT2 (ENSMMMG00000009950) #33	ENSMMMG00000009922	ENSMMMG00000009920	CNOT6 (ENSMMMG00000009896) #34	SCGB3A1 (ENSMMMG00000009881) #35
Hystricomorpha	ANCESTRAL SPECIES	30	ENSGT00940000160245	ENSGT00940000161487	ENSGT00940000162330 #7	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00940000153137.a.b.a #19	ENSGT00950000182915.a.a.a #20	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00390000006124 #26	ENSGT00940000158554 #27	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358	ENSGT00940000163029 #37
Hystricomorpha_a	ANCESTRAL SPECIES	74	ENSGT00940000162238	ENSGT00940000160245	ENSGT00940000161487	ENSGT00940000162330 #7	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00950000182915.a.a.a #20	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00940000158554 #27	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358
Hystricomorpha_b	ANCESTRAL SPECIES	19	ENSGT00940000162238	ENSGT00940000160245	ENSGT00940000161487	ENSGT00940000162330 #7	ENSGT00940000162292 #9	ENSGT00940000162570 #10	ENSGT00940000162743 #11	ENSGT00940000162181 #12	ENSGT01030000234648.a.b.a.b #13	ENSGT00940000162816 #14	ENSGT00940000162715 #15	ENSGT00940000156647 #16	ENSGT00940000158334 #17	ENSGT00940000153503.a.a #18	ENSGT00950000182915.a.a.a #20	ENSGT00950000183201.b.b.b.a #22	ENSGT00940000160738 #23	ENSGT00940000156526.a #24	ENSGT00390000002781 #25	ENSGT00940000158554 #27	ENSGT00940000157465 #29	ENSGT00940000161005 #30	ENSGT00940000158327 #32	ENSGT00940000156413 #33	ENSGT00940000158978 #34	ENSGT00420000029848.A #35	ENSGT00940000159358
Long-tailed chinchilla	MODERN SPECIES	115	CLK4 (ENSCLAG00000013604)	ZNF354A (ENSCLAG00000014648)	ENSCLAG00000010643 #7	ENSCLAG00000017710 #7	ZNF354B (ENSCLAG00000013514) #10	ZFP2 (ENSCLAG00000011174) #11	ENSCLAG00000010435 #12	ENSCLAG00000010195 #12	GRM6 (ENSCLAG00000015195) #13	ZNF879 (ENSCLAG00000013696) #14	ZNF354C (ENSCLAG00000012651) #15	ADAMTS2 (ENSCLAG00000012213) #16	RUFY1 (ENSCLAG00000012650) #17	HNRNPH1 (ENSCLAG00000013617) #18	CANX (ENSCLAG00000012635) #20	MAML1 (ENSCLAG00000012443) #22	MGAT4B (ENSCLAG00000013986) #24	SQSTM1 (ENSCLAG00000014864) #25	TBC1D9B (ENSCLAG00000010716) #27	RNF130 (ENSCLAG00000012509) #29	RASGEF1C (ENSCLAG00000010592) #30	MAPK9 (ENSCLAG00000011477) #32	GFPT2 (ENSCLAG00000011097) #33	CNOT6 (ENSCLAG00000010489) #34	SCGB3A1 (ENSCLAG00000017376) #35	FLT4 (ENSCLAG00000012174)
Degu	MODERN SPECIES	70	ENSODEG00000007622	CLK4 (ENSODEG00000006750)	ZNF354A (ENSODEG00000008278)	ENSODEG00000006751	ENSODEG00000007859 #7	PROP1 (ENSODEG00000007660) #9	ZNF354B (ENSODEG00000007968) #10	ZNF454 (ENSODEG00000007335) #12	GRM6 (ENSODEG00000009985) #13	ZNF879 (ENSODEG00000007967) #14	ZNF354C (ENSODEG00000007509) #15	ADAMTS2 (ENSODEG00000010343) #16	RUFY1 (ENSODEG00000006045) #17	ENSODEG00000007058 #18	CANX (ENSODEG00000007247) #20	MAML1 (ENSODEG00000007120) #22	LTC4S (ENSODEG00000006956) #23	MGAT4B (ENSODEG00000006661) #24	SQSTM1 (ENSODEG00000007536) #25	TBC1D9B (ENSODEG00000007268) #27	RNF130 (ENSODEG00000006815) #29	ENSODEG00000006074 #32	GFPT2 (ENSODEG00000007246) #33	ENSODEG00000006939	CNOT6 (ENSODEG00000007041) #34	SCGB3A1 (ENSODEG00000006628) #35	FLT4 (ENSODEG00000006420)
Guinea pig	MODERN SPECIES	176	ZNF354A (ENSCPOG00000034791)	ENSCPOG00000037406 #7	ENSCPOG00000025194 #7	PROP1 (ENSCPOG00000020734) #9	ZNF354B (ENSCPOG00000002227) #10	ZFP2 (ENSCPOG00000031347) #11	ENSCPOG00000033835 #12	ENSCPOG00000035563 #12	GRM6 (ENSCPOG00000001162) #13	ZNF879 (ENSCPOG00000040313) #14	ZNF354C (ENSCPOG00000038581) #15	ADAMTS2 (ENSCPOG00000001168) #16	RUFY1 (ENSCPOG00000012088) #17	ENSCPOG00000001485 #18	CANX (ENSCPOG00000003259) #20	MAML1 (ENSCPOG00000009382) #22	LTC4S (ENSCPOG00000021312) #23	MGAT4B (ENSCPOG00000005836) #24	SQSTM1 (ENSCPOG00000026534) #25	TBC1D9B (ENSCPOG00000011294) #27	ENSCPOG00000015076	RNF130 (ENSCPOG00000013821) #29
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000045105 #7	ENSHGLG00000032445 #7	ENSHGLG00000009648 #9	ENSHGLG00000034750 #7	ENSHGLG00000033241 #7	ENSHGLG00000047455 #10	ZFP2 (ENSHGLG00000033138) #11	GRM6 (ENSHGLG00000013576) #13	ZNF879 (ENSHGLG00000013266) #14	ENSHGLG00000019454 #15	ADAMTS2 (ENSHGLG00000017531) #16	RUFY1 (ENSHGLG00000017638) #17	HNRNPH1 (ENSHGLG00000018565) #18	ENSHGLG00000014040 #19	ENSHGLG00000014507 #20	MAML1 (ENSHGLG00000007422) #22	LTC4S (ENSHGLG00000008079) #23	ENSHGLG00000010792 #24	SQSTM1 (ENSHGLG00000012249) #25	ENSHGLG00000034162 #26	TBC1D9B (ENSHGLG00000014248) #27	RNF130 (ENSHGLG00000019044) #29	ENSHGLG00000016658	RASGEF1C (ENSHGLG00000018254) #30	ENSHGLG00000039343	MAPK9 (ENSHGLG00000018063) #32	GFPT2 (ENSHGLG00000018020) #33	CNOT6 (ENSHGLG00000017756) #34	ENSHGLG00000015320 #35	ENSHGLG00000017837	ENSHGLG00000019068 #37