Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00940000175059	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.D ##26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153259.a.a.a	ENSGT00940000153972.A	ENSGT01100000263551.b.a.b
Amniota	ANCESTRAL SPECIES		ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153259.a.a.a
Mammalia	ANCESTRAL SPECIES	73	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00940000153972.A
Theria	ANCESTRAL SPECIES	15	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00530000063929.b #8	ENSGT00940000154175.g #7	ENSGT00940000154175.h ##7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Opossum	MODERN SPECIES	3	ENSMODG00000000608 #7	ENSMODG00000000611 #8	ENSMODG00000000623 #9	MMP20 (ENSMODG00000000639) #10	MMP27 (ENSMODG00000000669) #11	MMP8 (ENSMODG00000000692) #12	MMP1 (ENSMODG00000000712) #13	MMP3 (ENSMODG00000000734) #14	ENSMODG00000000767 #15	MMP13 (ENSMODG00000000794) #16	DCUN1D5 (ENSMODG00000000824) #17	DYNC2H1 (ENSMODG00000000925) #18	PDGFD (ENSMODG00000000942) #19	JRKL (ENSMODG00000024414) #20	CCDC82 (ENSMODG00000000097) #21	MAML2 (ENSMODG00000036741) #22	MTMR2 (ENSMODG00000000116) #23	CEP57 (ENSMODG00000000131) #24	FAM76B (ENSMODG00000000139) #25	SESN3 (ENSMODG00000000163) #26	ENDOD1 (ENSMODG00000000165) #27	ENSMODG00000000169 #28	AMOTL1 (ENSMODG00000000180) #29	PIWIL4 (ENSMODG00000000217) #30	FUT4 (ENSMODG00000024373) #31	ENSMODG00000028613 #32	ENSMODG00000043171 #33	ANKRD49 (ENSMODG00000000222) #34	MRE11 (ENSMODG00000000231) #35	GPR83 (ENSMODG00000000236) #36	IZUMO1R (ENSMODG00000000260) #37
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00530000063929.b #8	ENSGT00940000154175.g #7	ENSGT00940000154175.h ##7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000161737.n.b.a	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Tasmanian devil	MODERN SPECIES	2	MMP20 (ENSSHAG00000013213) #10	ENSSHAG00000012748 #9	ENSSHAG00000031693 #8	ENSSHAG00000022169 #7	YAP1 (ENSSHAG00000031498)	CFAP300 (ENSSHAG00000021373)	ENSSHAG00000008521	ANGPTL5 (ENSSHAG00000008135)	TRPC6 (ENSSHAG00000001852)	PGR (ENSSHAG00000028354)	ARHGAP42 (ENSSHAG00000015492)	CNTN5 (ENSSHAG00000012347)	ENSSHAG00000000656	JRKL (ENSSHAG00000029565) #20	CCDC82 (ENSSHAG00000020626) #21	MAML2 (ENSSHAG00000024964) #22	MTMR2 (ENSSHAG00000012900) #23	CEP57 (ENSSHAG00000013049) #24	FAM76B (ENSSHAG00000030305) #25	ENSSHAG00000014772	SESN3 (ENSSHAG00000016018) #26	ENDOD1 (ENSSHAG00000016362) #27	ENSSHAG00000016534 #28	AMOTL1 (ENSSHAG00000016815) #29	PIWIL4 (ENSSHAG00000017415) #30	FUT4 (ENSSHAG00000032130) #31	ENSSHAG00000028715 #32	ENSSHAG00000021016 #34	MRE11 (ENSSHAG00000017729) #35	GPR83 (ENSSHAG00000024803) #36	IZUMO1R (ENSSHAG00000029294) #37
Diprotodontia	ANCESTRAL SPECIES	11														ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000161737.n.b.a	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Wallaby	MODERN SPECIES	9051																ENSMEUG00000011747 #22
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000159119.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000161737.n.b.a	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Common wonbat	MODERN SPECIES	459															CCDC82 (ENSVURG00010010939) #21	MAML2 (ENSVURG00010010918) #22	ENSVURG00010010854 #23	CEP57 (ENSVURG00010010807) #24	FAM76B (ENSVURG00010010774) #25	ENSVURG00010010758	SESN3 (ENSVURG00010010715) #26	ENDOD1 (ENSVURG00010010700) #27	CWC15 (ENSVURG00010010692) #28	AMOTL1 (ENSVURG00010010648) #29	PIWIL4 (ENSVURG00010010619) #30	ENSVURG00010010592 #31	C11orf97 (ENSVURG00010010576) #32	ANKRD49 (ENSVURG00010010565) #34	MRE11 (ENSVURG00010010496) #35	GPR83 (ENSVURG00010010363) #36	IZUMO1R (ENSVURG00010010349) #37
koala	MODERN SPECIES	86													ENSPCIG00000001111	JRKL (ENSPCIG00000001127) #20	CCDC82 (ENSPCIG00000001133) #21	ENSPCIG00000001152 #22	MTMR2 (ENSPCIG00000001170) #23	CEP57 (ENSPCIG00000035948) #24	FAM76B (ENSPCIG00000001260) #25	SESN3 (ENSPCIG00000001309) #26	ENDOD1 (ENSPCIG00000001331) #27	CWC15 (ENSPCIG00000001348) #28	AMOTL1 (ENSPCIG00000001368) #29	PIWIL4 (ENSPCIG00000030600) #30	ENSPCIG00000030597 #31	C11orf97 (ENSPCIG00000034457) #32	ANKRD49 (ENSPCIG00000009610) #34	MRE11 (ENSPCIG00000009614) #35	GPR83 (ENSPCIG00000036706) #36	IZUMO1R (ENSPCIG00000003349) #37	ENSPCIG00000003364
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Atlantogenata	ANCESTRAL SPECIES	40	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Afrotheria	ANCESTRAL SPECIES	43	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Tenrec	MODERN SPECIES	7589																ENSETEG00000001003 #22	MTMR2 (ENSETEG00000000998) #23	CEP57 (ENSETEG00000000996) #24	FAM76B (ENSETEG00000000993) #25
Afrotheria_a	ANCESTRAL SPECIES	41	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Hyrax	MODERN SPECIES	6301																MAML2 (ENSPCAG00000015600) #22
Elephant	MODERN SPECIES	340	MMP7 (ENSLAFG00000002955)	ENSLAFG00000002954 #8	BIRC2 (ENSLAFG00000002953) #7	BIRC3 (ENSLAFG00000006047) #7	YAP1 (ENSLAFG00000003216)	CFAP300 (ENSLAFG00000003215)	CEP126 (ENSLAFG00000003624)	ANGPTL5 (ENSLAFG00000003621)	TRPC6 (ENSLAFG00000015085)	ENSLAFG00000006479	ARHGAP42 (ENSLAFG00000012625)	CNTN5 (ENSLAFG00000029736)	ENSLAFG00000026948	JRKL (ENSLAFG00000032743) #20	CCDC82 (ENSLAFG00000000217) #21	MAML2 (ENSLAFG00000001279) #22	MTMR2 (ENSLAFG00000008600) #23	CEP57 (ENSLAFG00000014511) #24	FAM76B (ENSLAFG00000014029) #25	SESN3 (ENSLAFG00000001537) #26	ENDOD1 (ENSLAFG00000010482) #27	ENSLAFG00000028723	KDM4D (ENSLAFG00000004460)	CWC15 (ENSLAFG00000004456) #28	AMOTL1 (ENSLAFG00000022009) #29	PIWIL4 (ENSLAFG00000008418) #30	FUT4 (ENSLAFG00000008415) #31	ANKRD49 (ENSLAFG00000003825) #34	MRE11 (ENSLAFG00000016373) #35	GPR83 (ENSLAFG00000016367) #36	IZUMO1R (ENSLAFG00000032394) #37
Xenarthra	ANCESTRAL SPECIES	895															ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26
Armadillo	MODERN SPECIES	4533															CCDC82 (ENSDNOG00000006456) #21	MAML2 (ENSDNOG00000045831) #22	MTMR2 (ENSDNOG00000007504) #23	CEP57 (ENSDNOG00000007492) #24
Sloth	MODERN SPECIES	6719																MAML2 (ENSCHOG00000011278) #22
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00530000063929.b #8	ENSGT00940000154175.j #7	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183201.a #22
Common shrew	MODERN SPECIES	5977																ENSSARG00000007554 #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Suina	ANCESTRAL SPECIES	5	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01070000257273	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Chacoan peccary	MODERN SPECIES	30														JRKL (ENSCWAG00000001572) #20	CCDC82 (ENSCWAG00000001593) #21	MAML2 (ENSCWAG00000001702) #22	MTMR2 (ENSCWAG00000001726) #23	CEP57 (ENSCWAG00000001747) #24	FAM76B (ENSCWAG00000001765) #25	SESN3 (ENSCWAG00000001788) #26	ENDOD1 (ENSCWAG00000001818) #27	KDM4D (ENSCWAG00000001831)	ENSCWAG00000001839	CWC15 (ENSCWAG00000001851) #28	AMOTL1 (ENSCWAG00000001874) #29	PIWIL4 (ENSCWAG00000001925) #30	ENSCWAG00000001987 #31	ENSCWAG00000001993 #32	ANKRD49 (ENSCWAG00000002004) #34	MRE11 (ENSCWAG00000002025) #35	NACA2 (ENSCWAG00000002065)
Pig	MODERN SPECIES	17	BIRC3 (ENSSSCG00000027529) #7	YAP1 (ENSSSCG00000031429)	CFAP300 (ENSSSCG00000014980)	CEP126 (ENSSSCG00000014979)	ANGPTL5 (ENSSSCG00000014978)	ENSSSCG00000061774	TRPC6 (ENSSSCG00000024022)	PGR (ENSSSCG00000014977)	ARHGAP42 (ENSSSCG00000014976)	CNTN5 (ENSSSCG00000014975)	ENSSSCG00000054749	ENSSSCG00000055851	JRKL (ENSSSCG00000034924) #20	CCDC82 (ENSSSCG00000014972) #21	ENSSSCG00000042256	MAML2 (ENSSSCG00000034879) #22	ENSSSCG00000056982	MTMR2 (ENSSSCG00000014970) #23	ENSSSCG00000014969 #24	FAM76B (ENSSSCG00000014967) #25	ENSSSCG00000041491	SESN3 (ENSSSCG00000037015) #26	ENDOD1 (ENSSSCG00000014965) #27	ENSSSCG00000054911	ENSSSCG00000057445	ENSSSCG00000057084	ENSSSCG00000036400	ENSSSCG00000034794	ENSSSCG00000031376	CWC15 (ENSSSCG00000014961) #28	AMOTL1 (ENSSSCG00000014960) #29
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765	ENSGT00940000158563
Yarkand deer	MODERN SPECIES		BIRC2 (ENSCHYG00000000902) #7	BIRC3 (ENSCHYG00000000926) #7	YAP1 (ENSCHYG00000000950)	CFAP300 (ENSCHYG00000000983)	CEP126 (ENSCHYG00000001029)	ANGPTL5 (ENSCHYG00000001077)	TRPC6 (ENSCHYG00000001196)	ENSCHYG00000001237	ENSCHYG00000001249	PGR (ENSCHYG00000001265)	ARHGAP42 (ENSCHYG00000001400)	CNTN5 (ENSCHYG00000001656)	ENSCHYG00000001741	JRKL (ENSCHYG00000001755) #20	CCDC82 (ENSCHYG00000001774) #21	MAML2 (ENSCHYG00000001814) #22	ENSCHYG00000001826	MTMR2 (ENSCHYG00000001840) #23	CEP57 (ENSCHYG00000001878) #24	FAM76B (ENSCHYG00000001944) #25	SESN3 (ENSCHYG00000002070) #26	ENSCHYG00000002108	ENDOD1 (ENSCHYG00000002117) #27	ENSCHYG00000002131	CWC15 (ENSCHYG00000002143) #28	AMOTL1 (ENSCHYG00000002196) #29	PIWIL4 (ENSCHYG00000002347) #30	FUT4 (ENSCHYG00000002405) #31	C11orf97 (ENSCHYG00000002417) #32	CWF19L2 (ENSCHYG00000002441)	ENSCHYG00000002475
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765	ENSGT00940000158563
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765	ENSGT00940000158563
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000153525.g.b.a.l	ENSGT00940000161513 #20	ENSGT00390000004986.b #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765	ENSGT00940000158563
Goat	DUPLICATION
Goat	MODERN SPECIES	6	CFAP300 (ENSCHIG00000009065)	CEP126 (ENSCHIG00000010122)	ANGPTL5 (ENSCHIG00000020358)	TRPC6 (ENSCHIG00000012921)	PGR (ENSCHIG00000021765)	ARHGAP42 (ENSCHIG00000024088)	ENSCHIG00000014784	CNTN5 (ENSCHIG00000008692)	ENSCHIG00000025381	ENSCHIG00000012754	ENSCHIG00000008854	ENSCHIG00000026137	JRKL (ENSCHIG00000013254) #20	ENSCHIG00000025173 #21	ENSCHIG00000012117 #22	ENSCHIG00000011629 #22	ENSCHIG00000017915	MTMR2 (ENSCHIG00000016981) #23	CEP57 (ENSCHIG00000013402) #24	FAM76B (ENSCHIG00000020487) #25	SESN3 (ENSCHIG00000025523) #26	ENDOD1 (ENSCHIG00000013572) #27	ENSCHIG00000023466	ENSCHIG00000009843	CWC15 (ENSCHIG00000013423) #28	AMOTL1 (ENSCHIG00000007539) #29	PIWIL4 (ENSCHIG00000007777) #30	FUT4 (ENSCHIG00000013426) #31	C11orf97 (ENSCHIG00000025332) #32	CWF19L2 (ENSCHIG00000013182)	ENSCHIG00000016274
Goat	MODERN SPECIES	6	YAP1 (ENSCHIG00000017090)	CFAP300 (ENSCHIG00000009065)	CEP126 (ENSCHIG00000010122)	ANGPTL5 (ENSCHIG00000020358)	TRPC6 (ENSCHIG00000012921)	PGR (ENSCHIG00000021765)	ARHGAP42 (ENSCHIG00000024088)	ENSCHIG00000014784	CNTN5 (ENSCHIG00000008692)	ENSCHIG00000025381	ENSCHIG00000012754	ENSCHIG00000008854	ENSCHIG00000026137	JRKL (ENSCHIG00000013254) #20	ENSCHIG00000025173 #21	ENSCHIG00000012117 #22	ENSCHIG00000011629 #22	ENSCHIG00000017915	MTMR2 (ENSCHIG00000016981) #23	CEP57 (ENSCHIG00000013402) #24	FAM76B (ENSCHIG00000020487) #25	SESN3 (ENSCHIG00000025523) #26	ENDOD1 (ENSCHIG00000013572) #27	ENSCHIG00000023466	ENSCHIG00000009843	CWC15 (ENSCHIG00000013423) #28	AMOTL1 (ENSCHIG00000007539) #29	PIWIL4 (ENSCHIG00000007777) #30	FUT4 (ENSCHIG00000013426) #31	C11orf97 (ENSCHIG00000025332) #32	CWF19L2 (ENSCHIG00000013182)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	6	BIRC2 (ENSOARG00020020262) #7	ENSOARG00020020385	BIRC3 (ENSOARG00020020405) #7	YAP1 (ENSOARG00020020483)	CFAP300 (ENSOARG00020021370)	ANGPTL5 (ENSOARG00020021669)	TRPC6 (ENSOARG00020021734)	ARHGAP42 (ENSOARG00020022418)	ENSOARG00020022833	CNTN5 (ENSOARG00020022860)	ENSOARG00020023102	ENSOARG00020023161	ENSOARG00020023185	JRKL (ENSOARG00020023202) #20	ENSOARG00020023333 #22	MAML2 (ENSOARG00020023344) #22	ENSOARG00020023366 #23	CEP57 (ENSOARG00020023483) #24	FAM76B (ENSOARG00020023594) #25	SESN3 (ENSOARG00020023675) #26	ENDOD1 (ENSOARG00020023802) #27	KDM4D (ENSOARG00020023815)	CWC15 (ENSOARG00020023834) #28	AMOTL1 (ENSOARG00020023880) #29	PIWIL4 (ENSOARG00020024217) #30	ENSOARG00020024270	FUT4 (ENSOARG00020024279) #31	C11orf97 (ENSOARG00020024290) #32	CWF19L2 (ENSOARG00020024318)	OTX2 (ENSOARG00020024485)	GUCY1A2 (ENSOARG00020024499)
Rambouillet Sheep	MODERN SPECIES	6	MMP7 (ENSOARG00020020219)	BIRC2 (ENSOARG00020020262) #7	ENSOARG00020020385	BIRC3 (ENSOARG00020020405) #7	YAP1 (ENSOARG00020020483)	CFAP300 (ENSOARG00020021370)	ANGPTL5 (ENSOARG00020021669)	TRPC6 (ENSOARG00020021734)	ARHGAP42 (ENSOARG00020022418)	ENSOARG00020022833	CNTN5 (ENSOARG00020022860)	ENSOARG00020023102	ENSOARG00020023161	ENSOARG00020023185	JRKL (ENSOARG00020023202) #20	ENSOARG00020023333 #22	MAML2 (ENSOARG00020023344) #22	ENSOARG00020023366 #23	CEP57 (ENSOARG00020023483) #24	FAM76B (ENSOARG00020023594) #25	SESN3 (ENSOARG00020023675) #26	ENDOD1 (ENSOARG00020023802) #27	KDM4D (ENSOARG00020023815)	CWC15 (ENSOARG00020023834) #28	AMOTL1 (ENSOARG00020023880) #29	PIWIL4 (ENSOARG00020024217) #30	ENSOARG00020024270	FUT4 (ENSOARG00020024279) #31	C11orf97 (ENSOARG00020024290) #32	CWF19L2 (ENSOARG00020024318)	OTX2 (ENSOARG00020024485)
Bovinae	ANCESTRAL SPECIES	21	ENSGT00530000063929.b #8	ENSGT00910000147719.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000003682.gb.a.d.a.b.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000153117.B.c.b	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765
Bos	ANCESTRAL SPECIES	20	ENSGT00910000147719.a	ENSGT00940000154175.i.b.l #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT01100000263481.n.a.b.a.b.a.b.a.b.a.a.a.b	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000003682.gb.a.d.a.b.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000153117.B.c.b	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765
Bos_a	ANCESTRAL SPECIES	15	ENSGT00910000147719.a	ENSGT00940000154175.i.b.l #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT01100000263481.n.a.b.a.b.a.b.a.b.a.a.a.b	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000003682.gb.a.d.a.b.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000153117.B.c.b	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765
Domestic yak	MODERN SPECIES	4	BIRC3 (ENSBGRG00000016714) #7	ENSBGRG00000016649	YAP1 (ENSBGRG00000016272)	ENSBGRG00000016235	CFAP300 (ENSBGRG00000015991)	CEP126 (ENSBGRG00000015803)	ANGPTL5 (ENSBGRG00000015671)	TRPC6 (ENSBGRG00000015265)	PGR (ENSBGRG00000015051)	ENSBGRG00000015030	ARHGAP42 (ENSBGRG00000014431)	ENSBGRG00000014381	CNTN5 (ENSBGRG00000013816)	ENSBGRG00000013770	CCDC82 (ENSBGRG00000013494) #21	MAML2 (ENSBGRG00000013332) #22	MTMR2 (ENSBGRG00000013219) #23	CEP57 (ENSBGRG00000012542) #24	FAM76B (ENSBGRG00000012187) #25	ENSBGRG00000012109	SESN3 (ENSBGRG00000011794) #26	ENDOD1 (ENSBGRG00000011722) #27	ENSBGRG00000011701	ENSBGRG00000011618	CWC15 (ENSBGRG00000011403) #28	AMOTL1 (ENSBGRG00000010809) #29	PIWIL4 (ENSBGRG00000010477) #30	FUT4 (ENSBGRG00000010445) #31	C11orf97 (ENSBGRG00000010391) #32	CWF19L2 (ENSBGRG00000010092)	GUCY1A2 (ENSBGRG00000009963)
Wild yak	MODERN SPECIES	1101													ENSBMUG00000005778	JRKL (ENSBMUG00000005768) #20	CCDC82 (ENSBMUG00000005746) #21	MAML2 (ENSBMUG00000005699) #22	MTMR2 (ENSBMUG00000005633) #23	CEP57 (ENSBMUG00000005592) #24	FAM76B (ENSBMUG00000005565) #25
Bos_b	ANCESTRAL SPECIES	19	ENSGT00940000154175.i.b.l.a #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559.d.b	ENSGT01100000263481.n.a.b.a.b.a.b.a.b.a.a.a.b	ENSGT00510000047559.c	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000003682.gb.a.d.a.b.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.k	ENSGT00940000154517.gb.a.a.b.b	ENSGT00940000162152.l	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00940000155627	ENSGT00940000157765
Hybrid Bos Indicus	MODERN SPECIES	6	ENSBIXG00005015904 #7	BIRC3 (ENSBIXG00005002521) #7	YAP1 (ENSBIXG00005016306)	ENSBIXG00005000087	ENSBIXG00005002602	CEP126 (ENSBIXG00005016413)	ANGPTL5 (ENSBIXG00005016445)	TRPC6 (ENSBIXG00005002629)	PGR (ENSBIXG00005016631)	ARHGAP42 (ENSBIXG00005002766)	ENSBIXG00005017120	CNTN5 (ENSBIXG00005017345)	ENSBIXG00005017419	JRKL (ENSBIXG00005017457) #20	CCDC82 (ENSBIXG00005017501) #21	MAML2 (ENSBIXG00005017561) #22	MTMR2 (ENSBIXG00005017635) #23	CEP57 (ENSBIXG00005017776) #24	FAM76B (ENSBIXG00005017806) #25	SESN3 (ENSBIXG00005002907) #26	ENDOD1 (ENSBIXG00005002914) #27	ENSBIXG00005017939	ENSBIXG00005017950	ENSBIXG00005017962	CWC15 (ENSBIXG00005002919) #28	AMOTL1 (ENSBIXG00005002944) #29	PIWIL4 (ENSBIXG00005018252) #30	FUT4 (ENSBIXG00005018272) #31	C11orf97 (ENSBIXG00005018281) #32	CWF19L2 (ENSBIXG00005018327)	GUCY1A2 (ENSBIXG00005018531)
Cow	MODERN SPECIES	6	ENSBTAG00000052956	BIRC2 (ENSBTAG00000035735) #7	BIRC3 (ENSBTAG00000024918) #7	YAP1 (ENSBTAG00000039307)	CFAP300 (ENSBTAG00000015309)	CEP126 (ENSBTAG00000020032)	ANGPTL5 (ENSBTAG00000005308)	TRPC6 (ENSBTAG00000011227)	PGR (ENSBTAG00000024648)	ARHGAP42 (ENSBTAG00000004423)	CNTN5 (ENSBTAG00000020466)	ENSBTAG00000054100	ENSBTAG00000051087	JRKL (ENSBTAG00000037488) #20	CCDC82 (ENSBTAG00000006581) #21	MAML2 (ENSBTAG00000037962) #22	MTMR2 (ENSBTAG00000016557) #23	CEP57 (ENSBTAG00000016547) #24	FAM76B (ENSBTAG00000020748) #25	SESN3 (ENSBTAG00000004034) #26	ENDOD1 (ENSBTAG00000024803) #27	ENSBTAG00000053613	ENSBTAG00000050139	ENSBTAG00000001704	CWC15 (ENSBTAG00000007913) #28	AMOTL1 (ENSBTAG00000018945) #29	PIWIL4 (ENSBTAG00000014910) #30	FUT4 (ENSBTAG00000038062) #31	C15H11orf97 (ENSBTAG00000040449) #32	ENSBTAG00000052218	CWF19L2 (ENSBTAG00000018629)
American bison	DUPLICATION
American bison	MODERN SPECIES	3336													JRKL (ENSBBBG00000000629) #20	ENSBBBG00000000627 #21	ENSBBBG00000000624 #22	MAML2 (ENSBBBG00000000617) #22	MTMR2 (ENSBBBG00000000564) #23	CEP57 (ENSBBBG00000005527) #24	FAM76B (ENSBBBG00000005531) #25	ENSBBBG00000020456	SESN3 (ENSBBBG00000020468) #26	ENDOD1 (ENSBBBG00000020475) #27	ENSBBBG00000020484	ENSBBBG00000006788	CWC15 (ENSBBBG00000020504) #28	AMOTL1 (ENSBBBG00000005544) #29	PIWIL4 (ENSBBBG00000020571) #30
American bison	MODERN SPECIES	3336														JRKL (ENSBBBG00000000629) #20	ENSBBBG00000000627 #21	ENSBBBG00000000624 #22	MAML2 (ENSBBBG00000000617) #22	MTMR2 (ENSBBBG00000000564) #23	CEP57 (ENSBBBG00000005527) #24	FAM76B (ENSBBBG00000005531) #25	ENSBBBG00000020456	SESN3 (ENSBBBG00000020468) #26	ENDOD1 (ENSBBBG00000020475) #27	ENSBBBG00000020484	ENSBBBG00000006788	CWC15 (ENSBBBG00000020504) #28	AMOTL1 (ENSBBBG00000005544) #29	PIWIL4 (ENSBBBG00000020571) #30
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1172	ENSMMSG00000020239 #7	ENSMMSG00000020213	YAP1 (ENSMMSG00000019446)	CFAP300 (ENSMMSG00000019347)	CEP126 (ENSMMSG00000019297)	ANGPTL5 (ENSMMSG00000019261)	TRPC6 (ENSMMSG00000019068)	PGR (ENSMMSG00000018992)	ARHGAP42 (ENSMMSG00000018863)	ENSMMSG00000018817	CNTN5 (ENSMMSG00000018181)	ENSMMSG00000018121	JRKL (ENSMMSG00000018096) #20	CCDC82 (ENSMMSG00000018018) #21	ENSMMSG00000017987 #22	MAML2 (ENSMMSG00000017946) #22	MTMR2 (ENSMMSG00000017890) #23	CEP57 (ENSMMSG00000017678) #24	FAM76B (ENSMMSG00000017563) #25	SESN3 (ENSMMSG00000017468) #26	ENDOD1 (ENSMMSG00000017446) #27	ENSMMSG00000017424	CWC15 (ENSMMSG00000017389) #28	AMOTL1 (ENSMMSG00000017300) #29	PIWIL4 (ENSMMSG00000017182) #30	ENSMMSG00000017150	FUT4 (ENSMMSG00000017132) #31	C11orf97 (ENSMMSG00000017113) #32	CWF19L2 (ENSMMSG00000017060)	ENSMMSG00000017036	ENSMMSG00000017016
Siberian musk deer	MODERN SPECIES	1172	ENSMMSG00000020291 #7	ENSMMSG00000020239 #7	ENSMMSG00000020213	YAP1 (ENSMMSG00000019446)	CFAP300 (ENSMMSG00000019347)	CEP126 (ENSMMSG00000019297)	ANGPTL5 (ENSMMSG00000019261)	TRPC6 (ENSMMSG00000019068)	PGR (ENSMMSG00000018992)	ARHGAP42 (ENSMMSG00000018863)	ENSMMSG00000018817	CNTN5 (ENSMMSG00000018181)	ENSMMSG00000018121	JRKL (ENSMMSG00000018096) #20	CCDC82 (ENSMMSG00000018018) #21	ENSMMSG00000017987 #22	MAML2 (ENSMMSG00000017946) #22	MTMR2 (ENSMMSG00000017890) #23	CEP57 (ENSMMSG00000017678) #24	FAM76B (ENSMMSG00000017563) #25	SESN3 (ENSMMSG00000017468) #26	ENDOD1 (ENSMMSG00000017446) #27	ENSMMSG00000017424	CWC15 (ENSMMSG00000017389) #28	AMOTL1 (ENSMMSG00000017300) #29	PIWIL4 (ENSMMSG00000017182) #30	ENSMMSG00000017150	FUT4 (ENSMMSG00000017132) #31	C11orf97 (ENSMMSG00000017113) #32	CWF19L2 (ENSMMSG00000017060)	ENSMMSG00000017036
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.n.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Blue whale	MODERN SPECIES	19	ENSBMSG00010006981 #8	BIRC2 (ENSBMSG00010007026) #7	BIRC3 (ENSBMSG00010007044) #7	YAP1 (ENSBMSG00010007087)	CFAP300 (ENSBMSG00010007148)	CEP126 (ENSBMSG00010007195)	ANGPTL5 (ENSBMSG00010007219)	TRPC6 (ENSBMSG00010007259)	PGR (ENSBMSG00010007436)	ARHGAP42 (ENSBMSG00010007547)	CNTN5 (ENSBMSG00010007654)	ENSBMSG00010007759	ENSBMSG00010007767	JRKL (ENSBMSG00010007778) #20	CCDC82 (ENSBMSG00010007784) #21	MAML2 (ENSBMSG00010007807) #22	MTMR2 (ENSBMSG00010007830) #23	CEP57 (ENSBMSG00010007898) #24	FAM76B (ENSBMSG00010007931) #25	SESN3 (ENSBMSG00010007953) #26	ENDOD1 (ENSBMSG00010007966) #27	ENSBMSG00010007972	ENSBMSG00010007975	ENSBMSG00010007984	ENSBMSG00010007988	CWC15 (ENSBMSG00010007991) #28	AMOTL1 (ENSBMSG00010007997) #29	ENSBMSG00010008011 #30	ENSBMSG00010008013	ENSBMSG00010008018 #31	C11orf97 (ENSBMSG00010008028) #32
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.n.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Sperm whale	MODERN SPECIES	7	MMP7 (ENSPCTG00005008052)	ENSPCTG00005008079	TMEM123 (ENSPCTG00005008095) #8	BIRC3 (ENSPCTG00005008131) #7	YAP1 (ENSPCTG00005008267)	CFAP300 (ENSPCTG00005008410)	CEP126 (ENSPCTG00005008482)	ANGPTL5 (ENSPCTG00005008552)	TRPC6 (ENSPCTG00005008688)	ENSPCTG00005009589	PGR (ENSPCTG00005009652)	ARHGAP42 (ENSPCTG00005009957)	CNTN5 (ENSPCTG00005010190)	JRKL (ENSPCTG00005011023) #20	CCDC82 (ENSPCTG00005011035) #21	MAML2 (ENSPCTG00005011167) #22	MTMR2 (ENSPCTG00005011244) #23	CEP57 (ENSPCTG00005011292) #24	FAM76B (ENSPCTG00005011532) #25	SESN3 (ENSPCTG00005011709) #26	ENSPCTG00005011830	ENSPCTG00005011881	ENDOD1 (ENSPCTG00005011905) #27	ENSPCTG00005011937	ENSPCTG00005012004 #24	ENSPCTG00005012039	CWC15 (ENSPCTG00005012079) #28	AMOTL1 (ENSPCTG00005012114) #29	PIWIL4 (ENSPCTG00005012159) #30	FUT4 (ENSPCTG00005012401) #31	C11orf97 (ENSPCTG00005012423) #32
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.n.a	ENSGT00390000012084.w #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00390000015164.v.a.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.n.a.b	ENSGT00390000012084.w #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00390000015164.v.a.a	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.n.a.b	ENSGT00390000012084.w #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37	ENSGT00940000153972.A
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	87	BIRC2 (ENSDLEG00000019103) #7	BIRC3 (ENSDLEG00000019114) #7	YAP1 (ENSDLEG00000019132)	CFAP300 (ENSDLEG00000019141)	CEP126 (ENSDLEG00000019156)	ANGPTL5 (ENSDLEG00000019199)	TRPC6 (ENSDLEG00000019215)	ENSDLEG00000019251	PGR (ENSDLEG00000019262)	ARHGAP42 (ENSDLEG00000019294)	ENSDLEG00000019322	ENSDLEG00000019330	ENSDLEG00000019332	JRKL (ENSDLEG00000019346) #20	CCDC82 (ENSDLEG00000019354) #21	ENSDLEG00000019362 #22	ENSDLEG00000019364 #22	MTMR2 (ENSDLEG00000008099) #23	CEP57 (ENSDLEG00000008152) #24	FAM76B (ENSDLEG00000008194) #25	SESN3 (ENSDLEG00000008313) #26	ENDOD1 (ENSDLEG00000008365) #27	CWC15 (ENSDLEG00000008381) #28	AMOTL1 (ENSDLEG00000008425) #29	PIWIL4 (ENSDLEG00000008525) #30	FUT4 (ENSDLEG00000008615) #31	ANKRD49 (ENSDLEG00000008640) #34	MRE11 (ENSDLEG00000008671) #35	GPR83 (ENSDLEG00000008769) #36	IZUMO1R (ENSDLEG00000008834) #37	PANX1 (ENSDLEG00000009144)
Beluga whale	MODERN SPECIES	87	BIRC3 (ENSDLEG00000019114) #7	YAP1 (ENSDLEG00000019132)	CFAP300 (ENSDLEG00000019141)	CEP126 (ENSDLEG00000019156)	ANGPTL5 (ENSDLEG00000019199)	TRPC6 (ENSDLEG00000019215)	ENSDLEG00000019251	PGR (ENSDLEG00000019262)	ARHGAP42 (ENSDLEG00000019294)	ENSDLEG00000019322	ENSDLEG00000019330	ENSDLEG00000019332	JRKL (ENSDLEG00000019346) #20	CCDC82 (ENSDLEG00000019354) #21	ENSDLEG00000019362 #22	ENSDLEG00000019364 #22	MTMR2 (ENSDLEG00000008099) #23	CEP57 (ENSDLEG00000008152) #24	FAM76B (ENSDLEG00000008194) #25	SESN3 (ENSDLEG00000008313) #26	ENDOD1 (ENSDLEG00000008365) #27	CWC15 (ENSDLEG00000008381) #28	AMOTL1 (ENSDLEG00000008425) #29	PIWIL4 (ENSDLEG00000008525) #30	FUT4 (ENSDLEG00000008615) #31	ANKRD49 (ENSDLEG00000008640) #34	MRE11 (ENSDLEG00000008671) #35	GPR83 (ENSDLEG00000008769) #36	IZUMO1R (ENSDLEG00000008834) #37	PANX1 (ENSDLEG00000009144)	HEPHL1 (ENSDLEG00000009188)
Narwhal	MODERN SPECIES	314	MMP7 (ENSMMNG00015017833)	TMEM123 (ENSMMNG00015017867) #8	ENSMMNG00015017889	BIRC2 (ENSMMNG00015017921) #7	BIRC3 (ENSMMNG00015017985) #7	YAP1 (ENSMMNG00015018068)	CFAP300 (ENSMMNG00015018205)	CEP126 (ENSMMNG00015018271)	ANGPTL5 (ENSMMNG00015018291)	TRPC6 (ENSMMNG00015018388)	PGR (ENSMMNG00015018676)	ARHGAP42 (ENSMMNG00015018844)	CNTN5 (ENSMMNG00015018995)	JRKL (ENSMMNG00015019272) #20	CCDC82 (ENSMMNG00015019297) #21	MAML2 (ENSMMNG00015019358) #22	MTMR2 (ENSMMNG00015019396) #23	CEP57 (ENSMMNG00015019470) #24	FAM76B (ENSMMNG00015019558) #25	SESN3 (ENSMMNG00015019600) #26	ENDOD1 (ENSMMNG00015019650) #27	ENSMMNG00015019662	ENSMMNG00015019674 #28	AMOTL1 (ENSMMNG00015019700) #29	PIWIL4 (ENSMMNG00015019794) #30	FUT4 (ENSMMNG00015019851) #31	ANKRD49 (ENSMMNG00015019870) #34	MRE11 (ENSMMNG00015019911) #35	GPR83 (ENSMMNG00015020020) #36	IZUMO1R (ENSMMNG00015020047) #37	PANX1 (ENSMMNG00015020072)
Vaquita	MODERN SPECIES	19	TMEM123 (ENSPSNG00000013055) #8	ENSPSNG00000013115	BIRC2 (ENSPSNG00000013192) #7	BIRC3 (ENSPSNG00000013270) #7	YAP1 (ENSPSNG00000013360)	CFAP300 (ENSPSNG00000013652)	CEP126 (ENSPSNG00000013968)	ANGPTL5 (ENSPSNG00000014015)	TRPC6 (ENSPSNG00000014185)	ENSPSNG00000014410	PGR (ENSPSNG00000014472)	ARHGAP42 (ENSPSNG00000009766)	CNTN5 (ENSPSNG00000010146)	JRKL (ENSPSNG00000011075) #20	CCDC82 (ENSPSNG00000011116) #21	MAML2 (ENSPSNG00000011258) #22	ENSPSNG00000011365 #23	CEP57 (ENSPSNG00000011486) #24	FAM76B (ENSPSNG00000011736) #25	SESN3 (ENSPSNG00000011827) #26	ENDOD1 (ENSPSNG00000012066) #27	ENSPSNG00000012161	ENSPSNG00000012220	ENSPSNG00000012253 #28	AMOTL1 (ENSPSNG00000012299) #29	PIWIL4 (ENSPSNG00000012478) #30	ENSPSNG00000012714 #31	ANKRD49 (ENSPSNG00000012741) #34	MRE11 (ENSPSNG00000012783) #35	GPR83 (ENSPSNG00000013087) #36	IZUMO1R (ENSPSNG00000013201) #37
Dolphin	MODERN SPECIES	4063																MAML2 (ENSTTRG00000012909) #22
Camelidae	ANCESTRAL SPECIES	32	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	1	BIRC3 (ENSCDRG00005001220) #7	YAP1 (ENSCDRG00005001090)	CFAP300 (ENSCDRG00005001024)	CEP126 (ENSCDRG00005000987)	ANGPTL5 (ENSCDRG00005000957)	ENSCDRG00005000933	TRPC6 (ENSCDRG00005000413)	PGR (ENSCDRG00005000147)	ARHGAP42 (ENSCDRG00005017619)	ENSCDRG00005017534	CNTN5 (ENSCDRG00005017083)	ENSCDRG00005017020	JRKL (ENSCDRG00005017005) #20	CCDC82 (ENSCDRG00005016974) #21	ENSCDRG00005016961 #22	ENSCDRG00005016889 #22	MTMR2 (ENSCDRG00005016764) #23	CEP57 (ENSCDRG00005016540) #24	FAM76B (ENSCDRG00005016457) #25	SESN3 (ENSCDRG00005016152) #26	ENSCDRG00005016090 #27	ENSCDRG00005016007	ENSCDRG00005015979	CWC15 (ENSCDRG00005015943) #28	AMOTL1 (ENSCDRG00005015718) #29	PIWIL4 (ENSCDRG00005015533) #30	FUT4 (ENSCDRG00005015443) #31	C11orf97 (ENSCDRG00005015394) #32	ANKRD49 (ENSCDRG00005015366) #34	MRE11 (ENSCDRG00005014968) #35	GPR83 (ENSCDRG00005014899) #36
Arabian camel	MODERN SPECIES	1	BIRC2 (ENSCDRG00005001258) #7	BIRC3 (ENSCDRG00005001220) #7	YAP1 (ENSCDRG00005001090)	CFAP300 (ENSCDRG00005001024)	CEP126 (ENSCDRG00005000987)	ANGPTL5 (ENSCDRG00005000957)	ENSCDRG00005000933	TRPC6 (ENSCDRG00005000413)	PGR (ENSCDRG00005000147)	ARHGAP42 (ENSCDRG00005017619)	ENSCDRG00005017534	CNTN5 (ENSCDRG00005017083)	ENSCDRG00005017020	JRKL (ENSCDRG00005017005) #20	CCDC82 (ENSCDRG00005016974) #21	ENSCDRG00005016961 #22	ENSCDRG00005016889 #22	MTMR2 (ENSCDRG00005016764) #23	CEP57 (ENSCDRG00005016540) #24	FAM76B (ENSCDRG00005016457) #25	SESN3 (ENSCDRG00005016152) #26	ENSCDRG00005016090 #27	ENSCDRG00005016007	ENSCDRG00005015979	CWC15 (ENSCDRG00005015943) #28	AMOTL1 (ENSCDRG00005015718) #29	PIWIL4 (ENSCDRG00005015533) #30	FUT4 (ENSCDRG00005015443) #31	C11orf97 (ENSCDRG00005015394) #32	ANKRD49 (ENSCDRG00005015366) #34	MRE11 (ENSCDRG00005014968) #35
Alpaca	MODERN SPECIES	2510														JRKL (ENSVPAG00000008344) #20	CCDC82 (ENSVPAG00000008341) #21	MAML2 (ENSVPAG00000008339) #22	MTMR2 (ENSVPAG00000008336) #23	CEP57 (ENSVPAG00000008333) #24	FAM76B (ENSVPAG00000008323) #25
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Carnivora	ANCESTRAL SPECIES	21	ENSGT00940000155900	ENSGT00940000156937	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Felidae	ANCESTRAL SPECIES		ENSGT00940000156937	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000153446.b.d	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.t	ENSGT00940000162152.s	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Panthera	ANCESTRAL SPECIES	23	ENSGT00940000156937	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000153446.b.d	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.s	ENSGT00390000012084.y.b #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Tiger	MODERN SPECIES	123											ENSPTIG00000006982	ENSPTIG00000006956	ENSPTIG00000006712	JRKL (ENSPTIG00000010065) #20	CCDC82 (ENSPTIG00000006366) #21	MAML2 (ENSPTIG00000005913) #22	MTMR2 (ENSPTIG00000005248) #23	CEP57 (ENSPTIG00000002807) #24	FAM76B (ENSPTIG00000000581) #25	SESN3 (ENSPTIG00000000066) #26	ENDOD1 (ENSPTIG00000021253) #27	KDM4D (ENSPTIG00000021192)	ENSPTIG00000021149 #28	AMOTL1 (ENSPTIG00000021027) #29	PIWIL4 (ENSPTIG00000020931) #30	C11orf97 (ENSPTIG00000020857) #32	ANKRD49 (ENSPTIG00000020842) #34	MRE11 (ENSPTIG00000020482) #35	GPR83 (ENSPTIG00000020384) #36	IZUMO1R (ENSPTIG00000020317) #37	PANX1 (ENSPTIG00000020245)
Panthera_a	ANCESTRAL SPECIES	24	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000153446.b.d	ENSGT00390000003897.s.b.a.b.a.a	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.s.a	ENSGT00390000012084.y.a.a #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
leopard	MODERN SPECIES	17									PGR (ENSPPRG00000017879)	ARHGAP42 (ENSPPRG00000021497)	CNTN5 (ENSPPRG00000023167)	ENSPPRG00000022878	ENSPPRG00000014839	JRKL (ENSPPRG00000014847) #20	CCDC82 (ENSPPRG00000000337) #21	MAML2 (ENSPPRG00000000602) #22	MTMR2 (ENSPPRG00000002100) #23	CEP57 (ENSPPRG00000003241) #24	FAM76B (ENSPPRG00000003510) #25	SESN3 (ENSPPRG00000003990) #26	ENSPPRG00000004139	ENSPPRG00000004151 #27	ENSPPRG00000014900 #27	ENSPPRG00000014906	ENSPPRG00000014918	ENSPPRG00000005063 #28	AMOTL1 (ENSPPRG00000007186) #29	PIWIL4 (ENSPPRG00000007432) #30	FUT4 (ENSPPRG00000014970) #31	C11orf97 (ENSPPRG00000007748) #32	ANKRD49 (ENSPPRG00000008157) #34
lion	MODERN SPECIES	10	NCAPD3 (ENSPLOG00000013783)	VPS26B (ENSPLOG00000013860)	THYN1 (ENSPLOG00000013910)	ACAD8 (ENSPLOG00000014088)	ENSPLOG00000014293	GLB1L3 (ENSPLOG00000014476)	GLB1L2 (ENSPLOG00000014685)	B3GAT1 (ENSPLOG00000014881)	PGR (ENSPLOG00000014975)	ARHGAP42 (ENSPLOG00000015316)	CNTN5 (ENSPLOG00000015817)	ENSPLOG00000016751	ENSPLOG00000016802	JRKL (ENSPLOG00000016824) #20	CCDC82 (ENSPLOG00000016852) #21	MAML2 (ENSPLOG00000016912) #22	MTMR2 (ENSPLOG00000016998) #23	CEP57 (ENSPLOG00000017062) #24	FAM76B (ENSPLOG00000017383) #25	SESN3 (ENSPLOG00000017658) #26	ENDOD1 (ENSPLOG00000017790) #27	KDM4D (ENSPLOG00000017815)	ENSPLOG00000017871 #28	AMOTL1 (ENSPLOG00000017940) #29	PIWIL4 (ENSPLOG00000018141) #30	FUT4 (ENSPLOG00000010997) #31	C11orf97 (ENSPLOG00000011026) #32	ANKRD49 (ENSPLOG00000011102) #34	MRE11 (ENSPLOG00000011192) #35	GPR83 (ENSPLOG00000011474) #36	IZUMO1R (ENSPLOG00000011548) #37
Cat	MODERN SPECIES	241	VPS26B (ENSFCAG00000007418)	THYN1 (ENSFCAG00000007419)	ACAD8 (ENSFCAG00000007420)	ENSFCAG00000048577	ENSFCAG00000045417	GLB1L2 (ENSFCAG00000013738)	B3GAT1 (ENSFCAG00000013741)	ENSFCAG00000044711	PGR (ENSFCAG00000041663)	ARHGAP42 (ENSFCAG00000022220)	CNTN5 (ENSFCAG00000013908)	ENSFCAG00000052818	ENSFCAG00000048190	JRKL (ENSFCAG00000007462) #20	CCDC82 (ENSFCAG00000027555) #21	MAML2 (ENSFCAG00000012287) #22	MTMR2 (ENSFCAG00000030514) #23	CEP57 (ENSFCAG00000025537) #24	FAM76B (ENSFCAG00000026051) #25	SESN3 (ENSFCAG00000005081) #26	ENDOD1 (ENSFCAG00000005079) #27	ENSFCAG00000043892	ENSFCAG00000045743	CWC15 (ENSFCAG00000007826) #28	AMOTL1 (ENSFCAG00000010915) #29	PIWIL4 (ENSFCAG00000010914) #30	FUT4 (ENSFCAG00000029438) #31	CD1H11orf97 (ENSFCAG00000036846) #32	ANKRD49 (ENSFCAG00000042246) #34	MRE11 (ENSFCAG00000025219) #35	GPR83 (ENSFCAG00000010910) #36
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000155900	ENSGT00940000156937	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823.b #32	ENSGT00910000147289	ENSGT00520000058823.a #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35
Canidae	ANCESTRAL SPECIES	17											ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823.b #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Red fox	DUPLICATION
Red fox	MODERN SPECIES	12						ENSVVUG00000012771	ENSVVUG00000012768	ARHGAP42 (ENSVVUG00000011940)	ENSVVUG00000011935	CNTN5 (ENSVVUG00000011837)	ENSVVUG00000011800	JRKL (ENSVVUG00000011782) #20	CCDC82 (ENSVVUG00000011778) #21	ENSVVUG00000011776 #22	ENSVVUG00000011774	ENSVVUG00000011770 #22	MTMR2 (ENSVVUG00000011747) #23	ENSVVUG00000011726 #24	FAM76B (ENSVVUG00000011705) #25	SESN3 (ENSVVUG00000011684) #26	ENDOD1 (ENSVVUG00000011659) #27	KDM4D (ENSVVUG00000011656)	ENSVVUG00000011648 #28	ENSVVUG00000011644	AMOTL1 (ENSVVUG00000011602) #29	PIWIL4 (ENSVVUG00000011577) #30	FUT4 (ENSVVUG00000011573) #31	ENSVVUG00000011567 #32	ENSVVUG00000011564	ANKRD49 (ENSVVUG00000011561) #34	MRE11 (ENSVVUG00000011537) #35
Red fox	MODERN SPECIES	12								ENSVVUG00000012771	ENSVVUG00000012768	ARHGAP42 (ENSVVUG00000011940)	ENSVVUG00000011935	CNTN5 (ENSVVUG00000011837)	ENSVVUG00000011800	JRKL (ENSVVUG00000011782) #20	CCDC82 (ENSVVUG00000011778) #21	ENSVVUG00000011776 #22	ENSVVUG00000011774	ENSVVUG00000011770 #22	MTMR2 (ENSVVUG00000011747) #23	ENSVVUG00000011726 #24	FAM76B (ENSVVUG00000011705) #25	SESN3 (ENSVVUG00000011684) #26	ENDOD1 (ENSVVUG00000011659) #27	KDM4D (ENSVVUG00000011656)	ENSVVUG00000011648 #28	ENSVVUG00000011644	AMOTL1 (ENSVVUG00000011602) #29	PIWIL4 (ENSVVUG00000011577) #30	FUT4 (ENSVVUG00000011573) #31	ENSVVUG00000011567 #32	ENSVVUG00000011564
Canis_lupus	ANCESTRAL SPECIES	21							ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000003477.n	ENSGT00940000158183	ENSGT00940000161257.f	ENSGT01100000265450	ENSGT00940000154900.cb.b	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00940000162213.a.a.c.a.a	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.z	ENSGT00940000162152.y	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823.b #32	ENSGT00910000147289	ENSGT00390000003919 #34
Dog	MODERN SPECIES	13							PGR (ENSCAFG00845015739)	ENSCAFG00845015949	ENSCAFG00845016310	ENSCAFG00845016498	ENSCAFG00845016836	ENSCAFG00845017020	ENSCAFG00845017193	JRKL (ENSCAFG00845017252) #20	CCDC82 (ENSCAFG00845017278) #21	MAML2 (ENSCAFG00845017403) #22	MTMR2 (ENSCAFG00845017531) #23	CEP57 (ENSCAFG00845017787) #24	FAM76B (ENSCAFG00845018160) #25	ENSCAFG00845018846	SESN3 (ENSCAFG00845018942) #26	ENDOD1 (ENSCAFG00845019180) #27	ENSCAFG00845019240	ENSCAFG00845019286	CWC15 (ENSCAFG00845019309) #28	AMOTL1 (ENSCAFG00845019406) #29	PIWIL4 (ENSCAFG00845019963) #30	FUT4 (ENSCAFG00845020086) #31	ENSCAFG00845020114 #32	ENSCAFG00845020169	ANKRD49 (ENSCAFG00845020201) #34
Dingo	DUPLICATION
Dingo	MODERN SPECIES	245													ENSCAFG00020016048	JRKL (ENSCAFG00020016050) #20	CCDC82 (ENSCAFG00020016052) #21	ENSCAFG00020016054 #22	MAML2 (ENSCAFG00020016057) #22	MTMR2 (ENSCAFG00020016062) #23	CEP57 (ENSCAFG00020016478) #24	FAM76B (ENSCAFG00020016484) #25	ENSCAFG00020016489	ENSCAFG00020016496 #26	ENSCAFG00020016504 #27	ENSCAFG00020016506 #27	ENSCAFG00020016510	ENSCAFG00020016513	CWC15 (ENSCAFG00020016515) #28	AMOTL1 (ENSCAFG00020016518) #29	PIWIL4 (ENSCAFG00020016521) #30	FUT4 (ENSCAFG00020016526) #31	ANKRD49 (ENSCAFG00020016528) #34
Dingo	MODERN SPECIES	245												ENSCAFG00020016048	JRKL (ENSCAFG00020016050) #20	CCDC82 (ENSCAFG00020016052) #21	ENSCAFG00020016054 #22	MAML2 (ENSCAFG00020016057) #22	MTMR2 (ENSCAFG00020016062) #23	CEP57 (ENSCAFG00020016478) #24	FAM76B (ENSCAFG00020016484) #25	ENSCAFG00020016489	ENSCAFG00020016496 #26	ENSCAFG00020016504 #27	ENSCAFG00020016506 #27	ENSCAFG00020016510	ENSCAFG00020016513	CWC15 (ENSCAFG00020016515) #28	AMOTL1 (ENSCAFG00020016518) #29	PIWIL4 (ENSCAFG00020016521) #30	FUT4 (ENSCAFG00020016526) #31	ANKRD49 (ENSCAFG00020016528) #34	ENSCAFG00020016530
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000155900	ENSGT00940000156937	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823.a #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Mustelinae	ANCESTRAL SPECIES	25														ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823.a #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Ferret	MODERN SPECIES	207								ENSMPUG00000012379	ENSMPUG00000012371	ENSMPUG00000012369	ENSMPUG00000012359	ENSMPUG00000012348	ENSMPUG00000012316	JRKL (ENSMPUG00000012306) #20	CCDC82 (ENSMPUG00000012300) #21	MAML2 (ENSMPUG00000012297) #22	MTMR2 (ENSMPUG00000012291) #23	CEP57 (ENSMPUG00000012287) #24	FAM76B (ENSMPUG00000012280) #25	ENSMPUG00000012279	SESN3 (ENSMPUG00000012272) #26	ENSMPUG00000012270 #27	KDM4D (ENSMPUG00000012267)	CWC15 (ENSMPUG00000012265) #28	AMOTL1 (ENSMPUG00000012261) #29	PIWIL4 (ENSMPUG00000012256) #30	FUT4 (ENSMPUG00000019345) #31	ENSMPUG00000012255	ANKRD49 (ENSMPUG00000012252) #34	MRE11 (ENSMPUG00000012250) #35	GPR83 (ENSMPUG00000012244) #36
American mink	MODERN SPECIES	6														JRKL (ENSNVIG00000006095) #20	CCDC82 (ENSNVIG00000005993) #21	MAML2 (ENSNVIG00000005971) #22	MTMR2 (ENSNVIG00000005888) #23	CEP57 (ENSNVIG00000005774) #24	FAM76B (ENSNVIG00000005739) #25	SESN3 (ENSNVIG00000005698) #26	ENDOD1 (ENSNVIG00000005691) #27	ENSNVIG00000005674	ENSNVIG00000005671	CWC15 (ENSNVIG00000005664) #28	AMOTL1 (ENSNVIG00000005602) #29	PIWIL4 (ENSNVIG00000005560) #30	FUT4 (ENSNVIG00000005553) #31	C11orf97 (ENSNVIG00000005537) #32	ANKRD49 (ENSNVIG00000005521) #34	MRE11 (ENSNVIG00000005415) #35	GPR83 (ENSNVIG00000005397) #36
Ursidae	ANCESTRAL SPECIES	15	ENSGT00940000155900	ENSGT00940000156937	ENSGT00940000153566.b	ENSGT00950000183064.a.b.a	ENSGT00390000013297	ENSGT00940000157590	ENSGT00950000182942.b.a.b	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.u	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823.a #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Giant Panda	MODERN SPECIES	18	IGSF9B (ENSAMEG00000007065)	JAM3 (ENSAMEG00000007109)	NCAPD3 (ENSAMEG00000007193)	ENSAMEG00000007275	ENSAMEG00000007294	ENSAMEG00000007367	GLB1L3 (ENSAMEG00000007400)	GLB1L2 (ENSAMEG00000007409)	ENSAMEG00000007465	ENSAMEG00000023980	ENSAMEG00000017449	ARHGAP42 (ENSAMEG00000014849)	CNTN5 (ENSAMEG00000003430)	JRKL (ENSAMEG00000007961) #20	CCDC82 (ENSAMEG00000007964) #21	MAML2 (ENSAMEG00000007988) #22	MTMR2 (ENSAMEG00000007994) #23	CEP57 (ENSAMEG00000008024) #24	FAM76B (ENSAMEG00000008044) #25	SESN3 (ENSAMEG00000011413) #26	ENDOD1 (ENSAMEG00000019907) #27	ENSAMEG00000027198	ENSAMEG00000025796	CWC15 (ENSAMEG00000011392) #28	AMOTL1 (ENSAMEG00000011381) #29	ENSAMEG00000001911	PIWIL4 (ENSAMEG00000007580) #30	FUT4 (ENSAMEG00000007616) #31	C11orf97 (ENSAMEG00000024321) #32	ANKRD49 (ENSAMEG00000028517) #34	MRE11 (ENSAMEG00000007626) #35
Ursus	ANCESTRAL SPECIES	157											ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.u.b	ENSGT00940000162152.u.a.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	149								ENSUMAG00000008510	ENSUMAG00000008495	ARHGAP42 (ENSUMAG00000008322)	ENSUMAG00000008293	CNTN5 (ENSUMAG00000008194)	ENSUMAG00000008130	JRKL (ENSUMAG00000008102) #20	CCDC82 (ENSUMAG00000008097) #21	ENSUMAG00000008084 #22	ENSUMAG00000008078 #22	MTMR2 (ENSUMAG00000007301) #23	CEP57 (ENSUMAG00000007244) #24	FAM76B (ENSUMAG00000007226) #25	SESN3 (ENSUMAG00000007186) #26	ENDOD1 (ENSUMAG00000007178) #27	ENSUMAG00000007175	ENSUMAG00000007170	CWC15 (ENSUMAG00000007161) #28	AMOTL1 (ENSUMAG00000007154) #29	PIWIL4 (ENSUMAG00000007117) #30	ANKRD49 (ENSUMAG00000007092) #34	MRE11 (ENSUMAG00000007075) #35	GPR83 (ENSUMAG00000007059) #36	IZUMO1R (ENSUMAG00000006944) #37
Polar bear	MODERN SPECIES	149							ENSUMAG00000008510	ENSUMAG00000008495	ARHGAP42 (ENSUMAG00000008322)	ENSUMAG00000008293	CNTN5 (ENSUMAG00000008194)	ENSUMAG00000008130	JRKL (ENSUMAG00000008102) #20	CCDC82 (ENSUMAG00000008097) #21	ENSUMAG00000008084 #22	ENSUMAG00000008078 #22	MTMR2 (ENSUMAG00000007301) #23	CEP57 (ENSUMAG00000007244) #24	FAM76B (ENSUMAG00000007226) #25	SESN3 (ENSUMAG00000007186) #26	ENDOD1 (ENSUMAG00000007178) #27	ENSUMAG00000007175	ENSUMAG00000007170	CWC15 (ENSUMAG00000007161) #28	AMOTL1 (ENSUMAG00000007154) #29	PIWIL4 (ENSUMAG00000007117) #30	ANKRD49 (ENSUMAG00000007092) #34	MRE11 (ENSUMAG00000007075) #35	GPR83 (ENSUMAG00000007059) #36	IZUMO1R (ENSUMAG00000006944) #37	PANX1 (ENSUMAG00000006930)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	4847														JRKL (ENSUAMG00000027617) #20	ENSUAMG00000027618 #21	ENSUAMG00000027620 #22
American black bear	MODERN SPECIES	5704																ENSUAMG00000003283 #22	ENSUAMG00000003285
Laurasiatheria_c	ANCESTRAL SPECIES	23	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Equus	ANCESTRAL SPECIES	25	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT01010000229305	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.ab	ENSGT00940000162152.`b	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Donkey	MODERN SPECIES	12	BIRC2 (ENSEASG00005011141) #7	BIRC3 (ENSEASG00005011145) #7	YAP1 (ENSEASG00005011146)	CFAP300 (ENSEASG00005031746)	CEP126 (ENSEASG00005011151)	ANGPTL5 (ENSEASG00005011153)	TRPC6 (ENSEASG00005011159)	PGR (ENSEASG00005011167)	ARHGAP42 (ENSEASG00005011181)	CNTN5 (ENSEASG00005011200)	ENSEASG00005011203	ENSEASG00005011207	ENSEASG00005011209	JRKL (ENSEASG00005035447) #20	CCDC82 (ENSEASG00005011214) #21	MAML2 (ENSEASG00005011221) #22	ENSEASG00005036655	MTMR2 (ENSEASG00005011224) #23	CEP57 (ENSEASG00005011227) #24	FAM76B (ENSEASG00005011231) #25	SESN3 (ENSEASG00005011270) #26	ENDOD1 (ENSEASG00005028824) #27	ENSEASG00005011277	ENSEASG00005028515	CWC15 (ENSEASG00005011279) #28	AMOTL1 (ENSEASG00005011287) #29	PIWIL4 (ENSEASG00005027983) #30	FUT4 (ENSEASG00005011312) #31	C11orf97 (ENSEASG00005011314) #32	ANKRD49 (ENSEASG00005032651) #34	MRE11 (ENSEASG00005011342) #35
Horse	MODERN SPECIES	28	BIRC3 (ENSECAG00000047232) #7	ENSECAG00000054274	YAP1 (ENSECAG00000008660)	CFAP300 (ENSECAG00000008152)	CEP126 (ENSECAG00000000666)	ANGPTL5 (ENSECAG00000021029)	TRPC6 (ENSECAG00000023421)	PGR (ENSECAG00000011511)	ARHGAP42 (ENSECAG00000005829)	CNTN5 (ENSECAG00000000340)	ENSECAG00000037608	ENSECAG00000021004	ENSECAG00000052632	JRKL (ENSECAG00000001856) #20	CCDC82 (ENSECAG00000018064) #21	MAML2 (ENSECAG00000014537) #22	MTMR2 (ENSECAG00000018921) #23	CEP57 (ENSECAG00000010938) #24	FAM76B (ENSECAG00000005330) #25	SESN3 (ENSECAG00000017743) #26	ENSECAG00000030703	ENDOD1 (ENSECAG00000017667) #27	ENSECAG00000036765	ENSECAG00000057140	CWC15 (ENSECAG00000013314) #28	AMOTL1 (ENSECAG00000012681) #29	FUT4 (ENSECAG00000024199) #31	PIWIL4 (ENSECAG00000024385) #30	ANKRD49 (ENSECAG00000024188) #34	MRE11 (ENSECAG00000000295) #35	GPR83 (ENSECAG00000020552) #36
Chiroptera	ANCESTRAL SPECIES	33	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Megabat	MODERN SPECIES	3109																MAML2 (ENSPVAG00000005721) #22	MTMR2 (ENSPVAG00000005719) #23	CEP57 (ENSPVAG00000005717) #24	FAM76B (ENSPVAG00000005713) #25
Microchiroptera	ANCESTRAL SPECIES	34	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Greater horseshoe bat	MODERN SPECIES	2	BIRC2 (ENSRFEG00010006459) #7	BIRC3 (ENSRFEG00010006379) #7	ENSRFEG00010006344	YAP1 (ENSRFEG00010006175)	CFAP300 (ENSRFEG00010006073)	CEP126 (ENSRFEG00010005996)	ANGPTL5 (ENSRFEG00010005960)	TRPC6 (ENSRFEG00010021416)	PGR (ENSRFEG00010021367)	ENSRFEG00010021353	ARHGAP42 (ENSRFEG00010021297)	CNTN5 (ENSRFEG00010021161)	ENSRFEG00010021116	JRKL (ENSRFEG00010021090) #20	CCDC82 (ENSRFEG00010021069) #21	MAML2 (ENSRFEG00010021043) #22	MTMR2 (ENSRFEG00010021018) #23	CEP57 (ENSRFEG00010020926) #24	FAM76B (ENSRFEG00010020857) #25	SESN3 (ENSRFEG00010020812) #26	ENDOD1 (ENSRFEG00010020792) #27	ENSRFEG00010020772	ENSRFEG00010020755	CWC15 (ENSRFEG00010020742) #28	AMOTL1 (ENSRFEG00010020674) #29	PIWIL4 (ENSRFEG00010020425) #30	FUT4 (ENSRFEG00010020392) #31	C11orf97 (ENSRFEG00010020369) #32	ANKRD49 (ENSRFEG00010020343) #34	MRE11 (ENSRFEG00010020173) #35	GPR83 (ENSRFEG00010020113) #36
Microbat	MODERN SPECIES	1156														JRKL (ENSMLUG00000025663) #20	CCDC82 (ENSMLUG00000008655) #21	MAML2 (ENSMLUG00000008638) #22	ENSMLUG00000013626 #23
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00530000063929.b #8	ENSGT00940000154175.j #7	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35
Primates	ANCESTRAL SPECIES		ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00390000000537.e	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00910000147289
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00390000000537.e	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34
Cebidae	ANCESTRAL SPECIES		ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00390000000537.e	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158.e.a #29	ENSGT00940000160158.e.b #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Cebidae_a	ANCESTRAL SPECIES	22	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00390000000537.e.b	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00390000012084.o #28	ENSGT00940000160158.e.a #29
Bolivian squirrel monkey	MODERN SPECIES	50	YAP1 (ENSSBOG00000027497)	ENSSBOG00000036077	CFAP300 (ENSSBOG00000033758)	CEP126 (ENSSBOG00000028647)	ANGPTL5 (ENSSBOG00000031015)	ENSSBOG00000032893	TRPC6 (ENSSBOG00000019836)	ENSSBOG00000021319	ENSSBOG00000023108	ENSSBOG00000023277	PGR (ENSSBOG00000013714)	ARHGAP42 (ENSSBOG00000035822)	CNTN5 (ENSSBOG00000023228)	ENSSBOG00000018311	CCDC82 (ENSSBOG00000027897) #21	MAML2 (ENSSBOG00000031458) #22	MTMR2 (ENSSBOG00000012973) #23	CEP57 (ENSSBOG00000030610) #24	FAM76B (ENSSBOG00000017588) #25
Capuchin	MODERN SPECIES	336													ENSCCAG00000019622	CCDC82 (ENSCCAG00000006142) #21	ENSCCAG00000020935	MAML2 (ENSCCAG00000027721) #22	MTMR2 (ENSCCAG00000035373) #23	CEP57 (ENSCCAG00000023614) #24	FAM76B (ENSCCAG00000023682) #25	SESN3 (ENSCCAG00000031002) #26	ENDOD1 (ENSCCAG00000036865) #27	SRSF8 (ENSCCAG00000022864)	ENSCCAG00000027439	CWC15 (ENSCCAG00000026289) #28	ENSCCAG00000033319 #29
Marmoset	MODERN SPECIES	2	ENSCJAG00000058230	PGR (ENSCJAG00000000583)	ARHGAP42 (ENSCJAG00000000566)	ENSCJAG00000023196	ENSCJAG00000073241	CNTN5 (ENSCJAG00000000543)	ENSCJAG00000078589	ENSCJAG00000068576	ENSCJAG00000073640	ENSCJAG00000023377	ENSCJAG00000074342	ENSCJAG00000074166	ENSCJAG00000069774	JRKL (ENSCJAG00000043270) #20	CCDC82 (ENSCJAG00000004365) #21	MAML2 (ENSCJAG00000004359) #22	MTMR2 (ENSCJAG00000004327) #23	CEP57 (ENSCJAG00000004281) #24	FAM76B (ENSCJAG00000040122) #25	ENSCJAG00000004220 #26	ENDOD1 (ENSCJAG00000039825) #27	ENSCJAG00000072491	KDM4D (ENSCJAG00000023319)	CWC15 (ENSCJAG00000040352) #28	AMOTL1 (ENSCJAG00000004124) #29	ENSCJAG00000070716	ENSCJAG00000065220	PIWIL4 (ENSCJAG00000004075) #30	FUT4 (ENSCJAG00000074794) #31	C11orf97 (ENSCJAG00000087393) #32	ANKRD49 (ENSCJAG00000083691) #34
Mas night monkey	MODERN SPECIES	278	TMEM123 (ENSANAG00000029026) #8	BIRC2 (ENSANAG00000037030) #7	BIRC3 (ENSANAG00000035989) #7	ENSANAG00000022618	YAP1 (ENSANAG00000029463)	CFAP300 (ENSANAG00000023658)	CEP126 (ENSANAG00000033095)	ANGPTL5 (ENSANAG00000025830)	TRPC6 (ENSANAG00000032595)	PGR (ENSANAG00000036519)	ARHGAP42 (ENSANAG00000033530)	ENSANAG00000026824	CNTN5 (ENSANAG00000024170)	ENSANAG00000022382	CCDC82 (ENSANAG00000025591) #21	MAML2 (ENSANAG00000022462) #22	MTMR2 (ENSANAG00000028178) #23	CEP57 (ENSANAG00000033666) #24	FAM76B (ENSANAG00000027519) #25	SESN3 (ENSANAG00000032229) #26	ENSANAG00000031662	ENDOD1 (ENSANAG00000036222) #27	SRSF8 (ENSANAG00000031642)	ENSANAG00000022615	CWC15 (ENSANAG00000020484) #28
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00390000000537.e	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31
Vervet Monkey	MODERN SPECIES		MMP20 (ENSCSAG00000003216) #10	MMP7 (ENSCSAG00000003219)	TMEM123 (ENSCSAG00000003220) #8	BIRC3 (ENSCSAG00000003222) #7	YAP1 (ENSCSAG00000003224)	CFAP300 (ENSCSAG00000003227)	CEP126 (ENSCSAG00000003230)	ANGPTL5 (ENSCSAG00000003234)	TRPC6 (ENSCSAG00000003254)	PGR (ENSCSAG00000003260)	ARHGAP42 (ENSCSAG00000003267)	ENSCSAG00000003271	CNTN5 (ENSCSAG00000003274)	JRKL (ENSCSAG00000000606) #20	CCDC82 (ENSCSAG00000003276) #21	MAML2 (ENSCSAG00000003277) #22	MTMR2 (ENSCSAG00000003280) #23	CEP57 (ENSCSAG00000003283) #24	FAM76B (ENSCSAG00000003286) #25	SESN3 (ENSCSAG00000003288) #26	ENDOD1 (ENSCSAG00000003290) #27	KDM4E (ENSCSAG00000003292)	KDM4D (ENSCSAG00000003295)	CWC15 (ENSCSAG00000003299) #28	AMOTL1 (ENSCSAG00000003315) #29	PIWIL4 (ENSCSAG00000003360) #30	FUT4 (ENSCSAG00000000607) #31	C11orf97 (ENSCSAG00000003377) #32	ANKRD49 (ENSCSAG00000003379) #34	MRE11 (ENSCSAG00000003391) #35	GPR83 (ENSCSAG00000003397) #36
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00860000135858	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31
Cercopithecinae_b	ANCESTRAL SPECIES	21	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00860000135858	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Olive baboon	MODERN SPECIES	3	YAP1 (ENSPANG00000007466)	ENSPANG00000047316	CEP126 (ENSPANG00000005405)	ANGPTL5 (ENSPANG00000024283)	TRPC6 (ENSPANG00000015044)	PGR (ENSPANG00000010677)	ARHGAP42 (ENSPANG00000015327)	ENSPANG00000048576	CNTN5 (ENSPANG00000008340)	ENSPANG00000039316	ENSPANG00000044716	ENSPANG00000047988	ENSPANG00000051283	JRKL (ENSPANG00000003755) #20	CCDC82 (ENSPANG00000020671) #21	MAML2 (ENSPANG00000004951) #22	ENSPANG00000044338	MTMR2 (ENSPANG00000012250) #23	CEP57 (ENSPANG00000003973) #24	FAM76B (ENSPANG00000006473) #25	SESN3 (ENSPANG00000012747) #26	ENDOD1 (ENSPANG00000009553) #27	SRSF8 (ENSPANG00000032291)	KDM4F (ENSPANG00000038422)	KDM4E (ENSPANG00000047397)	KDM4D (ENSPANG00000000063)	CWC15 (ENSPANG00000019125) #28	AMOTL1 (ENSPANG00000018871) #29	PIWIL4 (ENSPANG00000016066) #30	ENSPANG00000046304	FUT4 (ENSPANG00000051031) #31
Cercopithecinae_d	ANCESTRAL SPECIES	45	ENSGT00910000147719	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00390000010045.g.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00860000135858	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Sooty mangabey	MODERN SPECIES	172	ENSCATG00000034848	BIRC2 (ENSCATG00000039366) #7	BIRC3 (ENSCATG00000025833) #7	YAP1 (ENSCATG00000035423)	CFAP300 (ENSCATG00000039694)	CEP126 (ENSCATG00000028236)	ANGPTL5 (ENSCATG00000042360)	TRPC6 (ENSCATG00000034519)	PGR (ENSCATG00000029370)	ARHGAP42 (ENSCATG00000038167)	ENSCATG00000033474	CNTN5 (ENSCATG00000036648)	JRKL (ENSCATG00000016525) #20	ENSCATG00000037010	CCDC82 (ENSCATG00000021333) #21	MAML2 (ENSCATG00000034406) #22	MTMR2 (ENSCATG00000032336) #23	CEP57 (ENSCATG00000034084) #24	FAM76B (ENSCATG00000014922) #25	SESN3 (ENSCATG00000039763) #26	ENSCATG00000015854	ENDOD1 (ENSCATG00000044441) #27	SRSF8 (ENSCATG00000018279)	ENSCATG00000020182	KDM4D (ENSCATG00000015609)	CWC15 (ENSCATG00000030235) #28
Drill	MODERN SPECIES	1365													JRKL (ENSMLEG00000017227) #20	ENSMLEG00000009269	CCDC82 (ENSMLEG00000037065) #21	MAML2 (ENSMLEG00000036653) #22	MTMR2 (ENSMLEG00000042985) #23	CEP57 (ENSMLEG00000030398) #24	FAM76B (ENSMLEG00000031982) #25	SESN3 (ENSMLEG00000003568) #26	ENSMLEG00000006421	ENDOD1 (ENSMLEG00000043710) #27	ENSMLEG00000032341	KDM4E (ENSMLEG00000038416)	KDM4D (ENSMLEG00000005495)	CWC15 (ENSMLEG00000035668) #28	AMOTL1 (ENSMLEG00000035114) #29	PIWIL4 (ENSMLEG00000029752) #30	FUT4 (ENSMLEG00000044444) #31	C11orf97 (ENSMLEG00000033483) #32	ENSMLEG00000043711
Macaca	ANCESTRAL SPECIES	2	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000010045.g.a	ENSGT00940000161513 #20	ENSGT00860000135858	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00520000058823 #32	ENSGT00910000147289
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT01100000263493.a.b.a.b.b.b.a.a.a.a.b.b.a	ENSGT01100000263493.a.b.a.a.b.b.b.b.a.b.a.a	ENSGT00390000015405.s.d	ENSGT00940000161513 #20	ENSGT00860000135858	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00520000058823 #32	ENSGT00390000003919.e #34	ENSGT00390000017288.c #35
Crab-eating macaque	MODERN SPECIES	5	YAP1 (ENSMFAG00000037027)	CEP126 (ENSMFAG00000030828)	ANGPTL5 (ENSMFAG00000036602)	TRPC6 (ENSMFAG00000002181)	ENSMFAG00000055655	ARHGAP42 (ENSMFAG00000000533)	CNTN5 (ENSMFAG00000045865)	ENSMFAG00000056178	ENSMFAG00000053298	ENSMFAG00000060346	ENSMFAG00000052366	ENSMFAG00000050345	ENSMFAG00000028681	JRKL (ENSMFAG00000030353) #20	CCDC82 (ENSMFAG00000036325) #21	MAML2 (ENSMFAG00000031735) #22	MTMR2 (ENSMFAG00000040303) #23	CEP57 (ENSMFAG00000003768) #24	FAM76B (ENSMFAG00000042981) #25	ENSMFAG00000048059	SESN3 (ENSMFAG00000040069) #26	ENSMFAG00000055573	ENDOD1 (ENSMFAG00000055848) #27	KDM4F (ENSMFAG00000059067)	ENSMFAG00000040102	KDM4D (ENSMFAG00000024894)	CWC15 (ENSMFAG00000044052) #28	AMOTL1 (ENSMFAG00000032749) #29	PIWIL4 (ENSMFAG00000042631) #30	C11orf97 (ENSMFAG00000044586) #32	ANKRD49 (ENSMFAG00000038557) #34
Rhesus	MODERN SPECIES	5	TRPC6 (ENSMMUG00000011835)	PGR (ENSMMUG00000011846)	ENSMMUG00000059891	ARHGAP42 (ENSMMUG00000022603)	ENSMMUG00000057177	CNTN5 (ENSMMUG00000016737)	ENSMMUG00000061185	ENSMMUG00000060458	ENSMMUG00000052417	ENSMMUG00000038443	ENSMMUG00000058706	JRKL (ENSMMUG00000003821) #20	ENSMMUG00000056501	CCDC82 (ENSMMUG00000007999) #21	ENSMMUG00000052484	MAML2 (ENSMMUG00000014806) #22	MTMR2 (ENSMMUG00000014801) #23	CEP57 (ENSMMUG00000014796) #24	FAM76B (ENSMMUG00000014792) #25	SESN3 (ENSMMUG00000009394) #26	ENDOD1 (ENSMMUG00000047793) #27	SRSF8 (ENSMMUG00000007639)	KDM4F (ENSMMUG00000045019)	KDM4E (ENSMMUG00000059644)	KDM4D (ENSMMUG00000023376)	CWC15 (ENSMMUG00000044962) #28	AMOTL1 (ENSMMUG00000001730) #29	PIWIL4 (ENSMMUG00000008965) #30	C14H11orf97 (ENSMMUG00000062781) #32	ANKRD49 (ENSMMUG00000061391) #34	MRE11 (ENSMMUG00000004112) #35
Pig-tailed macaque	MODERN SPECIES	109										ENSMNEG00000036289	CNTN5 (ENSMNEG00000043934)	ENSMNEG00000035759	JRKL (ENSMNEG00000010862) #20	CCDC82 (ENSMNEG00000036068) #21	ENSMNEG00000033275	MAML2 (ENSMNEG00000042629) #22	MTMR2 (ENSMNEG00000044061) #23	CEP57 (ENSMNEG00000031755) #24	FAM76B (ENSMNEG00000009651) #25	SESN3 (ENSMNEG00000030326) #26	ENSMNEG00000007007	ENDOD1 (ENSMNEG00000040186) #27	SRSF8 (ENSMNEG00000027570)	ENSMNEG00000035040	KDM4D (ENSMNEG00000026134)	CWC15 (ENSMNEG00000033968) #28	AMOTL1 (ENSMNEG00000044021) #29	PIWIL4 (ENSMNEG00000037456) #30	C11orf97 (ENSMNEG00000031514) #32	ENSMNEG00000020136	ANKRD49 (ENSMNEG00000034043) #34
Rhinopithecus	ANCESTRAL SPECIES	244														ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Black snub-nosed monkey	MODERN SPECIES	695														JRKL (ENSRBIG00000029080) #20	CCDC82 (ENSRBIG00000030883) #21	MAML2 (ENSRBIG00000001400) #22	MTMR2 (ENSRBIG00000028147) #23	CEP57 (ENSRBIG00000014037) #24	FAM76B (ENSRBIG00000006024) #25	SESN3 (ENSRBIG00000031220) #26	ENSRBIG00000027014	ENDOD1 (ENSRBIG00000025792) #27	ENSRBIG00000041837	ENSRBIG00000036245	ENSRBIG00000023300	KDM4E (ENSRBIG00000035068)	KDM4D (ENSRBIG00000029429)	CWC15 (ENSRBIG00000030781) #28	AMOTL1 (ENSRBIG00000043234) #29	PIWIL4 (ENSRBIG00000039745) #30	C11orf97 (ENSRBIG00000041747) #32
Golden snub-nosed monkey	MODERN SPECIES	1853													ENSRROG00000045222	JRKL (ENSRROG00000025782) #20	CCDC82 (ENSRROG00000011731) #21	MAML2 (ENSRROG00000043717) #22	MTMR2 (ENSRROG00000043388) #23	CEP57 (ENSRROG00000020602) #24	FAM76B (ENSRROG00000033284) #25
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00390000000537.e	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00390000009026	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00910000147059	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31
Hominidae	ANCESTRAL SPECIES	1	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00390000009026	ENSGT00940000155492.b	ENSGT00950000183087.A.a.b.b.g.e.b.a.a.a	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00390000009026	ENSGT00940000155492.b.c	ENSGT00950000183087.A.a.b.b.g.e.b.a.a.a	ENSGT00940000158183	ENSGT00940000162748.g	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Gorilla	MODERN SPECIES	2	ENSGGOG00000015908	TMEM123 (ENSGGOG00000008331) #8	BIRC2 (ENSGGOG00000008327) #7	BIRC3 (ENSGGOG00000005827) #7	ENSGGOG00000005796	CFAP300 (ENSGGOG00000000989)	CEP126 (ENSGGOG00000004641)	ANGPTL5 (ENSGGOG00000008463)	TRPC6 (ENSGGOG00000009198)	PGR (ENSGGOG00000016358)	ARHGAP42 (ENSGGOG00000011397)	CNTN5 (ENSGGOG00000016800)	ENSGGOG00000025493	JRKL (ENSGGOG00000000360) #20	CCDC82 (ENSGGOG00000016752) #21	MAML2 (ENSGGOG00000024120) #22	MTMR2 (ENSGGOG00000010339) #23	CEP57 (ENSGGOG00000013416) #24	FAM76B (ENSGGOG00000013409) #25	SESN3 (ENSGGOG00000004922) #26	ENDOD1 (ENSGGOG00000024775) #27	SRSF8 (ENSGGOG00000022679)	KDM4D (ENSGGOG00000010102)	CWC15 (ENSGGOG00000011926) #28	AMOTL1 (ENSGGOG00000001033) #29	PIWIL4 (ENSGGOG00000016276) #30	C11orf97 (ENSGGOG00000036219) #32	ANKRD49 (ENSGGOG00000008207) #34	MRE11 (ENSGGOG00000008192) #35	GPR83 (ENSGGOG00000007694) #36	IZUMO1R (ENSGGOG00000014840) #37
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00390000009026	ENSGT00940000155492.b.c	ENSGT00950000183087.A.a.b.b.g.e.b.a.a.a	ENSGT00940000158183	ENSGT00940000162748.g	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Pan	ANCESTRAL SPECIES	1	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00390000009026	ENSGT00940000155492.b.c	ENSGT00950000183087.A.a.b.b.g.e.b.a.a.a	ENSGT00940000158183	ENSGT00940000162748.g	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32
Chimpanzee	MODERN SPECIES	2	BIRC3 (ENSPTRG00000004212) #7	YAP1 (ENSPTRG00000004211)	CFAP300 (ENSPTRG00000004210)	CEP126 (ENSPTRG00000004209)	ANGPTL5 (ENSPTRG00000004208)	TRPC6 (ENSPTRG00000004207)	PGR (ENSPTRG00000004206)	ENSPTRG00000048308	ENSPTRG00000039214	ARHGAP42 (ENSPTRG00000004204)	ENSPTRG00000045366	CNTN5 (ENSPTRG00000004201)	ENSPTRG00000051433	JRKL (ENSPTRG00000028419) #20	CCDC82 (ENSPTRG00000004198) #21	MAML2 (ENSPTRG00000004196) #22	MTMR2 (ENSPTRG00000004195) #23	CEP57 (ENSPTRG00000004194) #24	FAM76B (ENSPTRG00000004193) #25	SESN3 (ENSPTRG00000004192) #26	ENDOD1 (ENSPTRG00000045007) #27	SRSF8 (ENSPTRG00000046909)	KDM4F (ENSPTRG00000044159)	ENSPTRG00000043643	KDM4E (ENSPTRG00000041826)	KDM4D (ENSPTRG00000004190)	CWC15 (ENSPTRG00000044239) #28	AMOTL1 (ENSPTRG00000004188) #29	PIWIL4 (ENSPTRG00000004187) #30	FUT4 (ENSPTRG00000028425) #31	C11H11orf97 (ENSPTRG00000047025) #32
Bonobo	MODERN SPECIES	2	BIRC2 (ENSPPAG00000004061) #7	BIRC3 (ENSPPAG00000029649) #7	YAP1 (ENSPPAG00000042951)	CFAP300 (ENSPPAG00000038653)	CEP126 (ENSPPAG00000005466)	ANGPTL5 (ENSPPAG00000026385)	TRPC6 (ENSPPAG00000028562)	ENSPPAG00000028196	ENSPPAG00000007168	ARHGAP42 (ENSPPAG00000043081)	CNTN5 (ENSPPAG00000003968)	ENSPPAG00000043290	ENSPPAG00000023621	JRKL (ENSPPAG00000025455) #20	CCDC82 (ENSPPAG00000021732) #21	MAML2 (ENSPPAG00000033930) #22	MTMR2 (ENSPPAG00000042525) #23	ENSPPAG00000024555 #24	FAM76B (ENSPPAG00000033075) #25	SESN3 (ENSPPAG00000027541) #26	ENDOD1 (ENSPPAG00000036031) #27	ENSPPAG00000033651	KDM4E (ENSPPAG00000022047)	CWC15 (ENSPPAG00000033609) #28	AMOTL1 (ENSPPAG00000036699) #29	PIWIL4 (ENSPPAG00000031181) #30	FUT4 (ENSPPAG00000021481) #31	C11orf97 (ENSPPAG00000031103) #32	ANKRD49 (ENSPPAG00000037946) #34	MRE11 (ENSPPAG00000034731) #35	GPR83 (ENSPPAG00000039550) #36
Human	MODERN SPECIES	2	MMP20 (ENSG00000137674) #10	MMP7 (ENSG00000137673)	TMEM123 (ENSG00000152558) #8	BIRC2 (ENSG00000110330) #7	BIRC3 (ENSG00000023445) #7	YAP1 (ENSG00000137693)	CFAP300 (ENSG00000137691)	CEP126 (ENSG00000110318)	ANGPTL5 (ENSG00000187151)	TRPC6 (ENSG00000137672)	PGR (ENSG00000082175)	ARHGAP42 (ENSG00000165895)	CNTN5 (ENSG00000149972)	JRKL (ENSG00000183340) #20	CCDC82 (ENSG00000149231) #21	MAML2 (ENSG00000184384) #22	MTMR2 (ENSG00000087053) #23	CEP57 (ENSG00000166037) #24	FAM76B (ENSG00000077458) #25	SESN3 (ENSG00000149212) #26	ENDOD1 (ENSG00000149218) #27	SRSF8 (ENSG00000263465)	KDM4F (ENSG00000255855)	KDM4E (ENSG00000235268)	KDM4D (ENSG00000186280)	CWC15 (ENSG00000150316) #28	AMOTL1 (ENSG00000166025) #29	FUT4 (ENSG00000196371) #31	PIWIL4 (ENSG00000134627) #30	C11orf97 (ENSG00000257057) #32	ANKRD49 (ENSG00000168876) #34
Orangutan	MODERN SPECIES	2	MMP7 (ENSPPYG00000003810)	TMEM123 (ENSPPYG00000003809) #8	BIRC2 (ENSPPYG00000003808) #7	BIRC3 (ENSPPYG00000034604) #7	YAP1 (ENSPPYG00000003806)	ENSPPYG00000003805	CEP126 (ENSPPYG00000003804)	ANGPTL5 (ENSPPYG00000003803)	TRPC6 (ENSPPYG00000003802)	PGR (ENSPPYG00000003801)	ARHGAP42 (ENSPPYG00000003799)	ENSPPYG00000041195	CNTN5 (ENSPPYG00000003797)	JRKL (ENSPPYG00000003796) #20	CCDC82 (ENSPPYG00000003795) #21	MAML2 (ENSPPYG00000003793) #22	MTMR2 (ENSPPYG00000003792) #23	CEP57 (ENSPPYG00000003790) #24	FAM76B (ENSPPYG00000003789) #25	SESN3 (ENSPPYG00000003788) #26	ENDOD1 (ENSPPYG00000040533) #27	SRSF8 (ENSPPYG00000035224)	KDM4F (ENSPPYG00000037461)	KDM4E (ENSPPYG00000041335)	CWC15 (ENSPPYG00000003785) #28	AMOTL1 (ENSPPYG00000003784) #29	PIWIL4 (ENSPPYG00000003783) #30	FUT4 (ENSPPYG00000037042) #31	ENSPPYG00000029760 #32	ENSPPYG00000041706	MRE11 (ENSPPYG00000037469) #35
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	424																ENSNLEG00000034001 #22
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	5	YAP1 (ENSNLEG00000007164)	CFAP300 (ENSNLEG00000007163)	CEP126 (ENSNLEG00000007160)	ANGPTL5 (ENSNLEG00000007159)	ENSNLEG00000027844	TRPC6 (ENSNLEG00000007157)	ENSNLEG00000007154	ENSNLEG00000033273	ARHGAP42 (ENSNLEG00000007152)	CNTN5 (ENSNLEG00000007147)	ENSNLEG00000034421	ENSNLEG00000007146	JRKL (ENSNLEG00000007145) #20	CCDC82 (ENSNLEG00000007144) #21	ENSNLEG00000030751 #22	ENSNLEG00000033879 #22	MTMR2 (ENSNLEG00000007138) #23	CEP57 (ENSNLEG00000007130) #24	ENSNLEG00000031555 #25	SESN3 (ENSNLEG00000007128) #26	ENSNLEG00000035714	ENDOD1 (ENSNLEG00000007127) #27	ENSNLEG00000031658	KDM4E (ENSNLEG00000007125)	ENSNLEG00000035015	KDM4D (ENSNLEG00000019232)	CWC15 (ENSNLEG00000031455) #28	AMOTL1 (ENSNLEG00000007120) #29	PIWIL4 (ENSNLEG00000007119) #30	ENSNLEG00000007118 #31	C11orf97 (ENSNLEG00000007117) #32
Gibbon	MODERN SPECIES	5	ENSNLEG00000033031	YAP1 (ENSNLEG00000007164)	CFAP300 (ENSNLEG00000007163)	CEP126 (ENSNLEG00000007160)	ANGPTL5 (ENSNLEG00000007159)	ENSNLEG00000027844	TRPC6 (ENSNLEG00000007157)	ENSNLEG00000007154	ENSNLEG00000033273	ARHGAP42 (ENSNLEG00000007152)	CNTN5 (ENSNLEG00000007147)	ENSNLEG00000034421	ENSNLEG00000007146	JRKL (ENSNLEG00000007145) #20	CCDC82 (ENSNLEG00000007144) #21	ENSNLEG00000030751 #22	ENSNLEG00000033879 #22	MTMR2 (ENSNLEG00000007138) #23	CEP57 (ENSNLEG00000007130) #24	ENSNLEG00000031555 #25	SESN3 (ENSNLEG00000007128) #26	ENSNLEG00000035714	ENDOD1 (ENSNLEG00000007127) #27	ENSNLEG00000031658	KDM4E (ENSNLEG00000007125)	ENSNLEG00000035015	KDM4D (ENSNLEG00000019232)	CWC15 (ENSNLEG00000031455) #28	AMOTL1 (ENSNLEG00000007120) #29	PIWIL4 (ENSNLEG00000007119) #30	ENSNLEG00000007118 #31
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Bushbaby	MODERN SPECIES	116	CFAP300 (ENSOGAG00000024314)	ENSOGAG00000028332	ENSOGAG00000030803	CEP126 (ENSOGAG00000009858)	ANGPTL5 (ENSOGAG00000009855)	TRPC6 (ENSOGAG00000000765)	PGR (ENSOGAG00000012310)	ARHGAP42 (ENSOGAG00000012302)	ENSOGAG00000029060	CNTN5 (ENSOGAG00000004704)	ENSOGAG00000027962	ENSOGAG00000033517	JRKL (ENSOGAG00000029206) #20	CCDC82 (ENSOGAG00000007288) #21	ENSOGAG00000024191	MAML2 (ENSOGAG00000000360) #22	MTMR2 (ENSOGAG00000005773) #23	ENSOGAG00000005770 #24	FAM76B (ENSOGAG00000005765) #25	SESN3 (ENSOGAG00000014489) #26	ENDOD1 (ENSOGAG00000026634) #27	ENSOGAG00000029074	ENSOGAG00000028767	ENSOGAG00000025313
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713.d	ENSGT00940000155492.b	ENSGT00940000158183.m	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Lemuriformes_a	ANCESTRAL SPECIES	147														ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Coquerels sifaka	MODERN SPECIES	801															JRKL (ENSPCOG00000004471) #20	MAML2 (ENSPCOG00000028333) #22	MTMR2 (ENSPCOG00000011333) #23	CEP57 (ENSPCOG00000019585) #24	FAM76B (ENSPCOG00000016586) #25	ENSPCOG00000017746	SESN3 (ENSPCOG00000017878) #26	ENDOD1 (ENSPCOG00000008619) #27	KDM4D (ENSPCOG00000024679)	CWC15 (ENSPCOG00000023913) #28	AMOTL1 (ENSPCOG00000024699) #29	PIWIL4 (ENSPCOG00000022264) #30	C11orf97 (ENSPCOG00000019915) #32	ANKRD49 (ENSPCOG00000022576) #34	MRE11 (ENSPCOG00000015583) #35	GPR83 (ENSPCOG00000022870) #36	IZUMO1R (ENSPCOG00000020918) #37
Greater bamboo lemur	MODERN SPECIES	587												ENSPSMG00000018014	ENSPSMG00000018016	JRKL (ENSPSMG00000018018) #20	CCDC82 (ENSPSMG00000018043) #21	MAML2 (ENSPSMG00000018059) #22	MTMR2 (ENSPSMG00000018109) #23
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	27	ENSMICG00000016656 #8	ENSMICG00000044293	BIRC3 (ENSMICG00000002746) #7	YAP1 (ENSMICG00000031456)	CFAP300 (ENSMICG00000017739)	CEP126 (ENSMICG00000009111)	ANGPTL5 (ENSMICG00000031686)	TRPC6 (ENSMICG00000010349)	PGR (ENSMICG00000006331)	ARHGAP42 (ENSMICG00000010758)	ENSMICG00000015969	ENSMICG00000031298	ENSMICG00000029672	JRKL (ENSMICG00000041876) #20	CCDC82 (ENSMICG00000009411) #21	ENSMICG00000031831 #22	MAML2 (ENSMICG00000009400) #22	MTMR2 (ENSMICG00000009395) #23	CEP57 (ENSMICG00000030559) #24	FAM76B (ENSMICG00000036906) #25	SESN3 (ENSMICG00000008178) #26	CWC15 (ENSMICG00000042790) #28	ENSMICG00000036230	AMOTL1 (ENSMICG00000001878) #29	ENSMICG00000041717	PIWIL4 (ENSMICG00000006375) #30	FUT4 (ENSMICG00000043071) #31	C11orf97 (ENSMICG00000043866) #32	ANKRD49 (ENSMICG00000013505) #34	ENSMICG00000027455 #35	GPR83 (ENSMICG00000028902) #36
Mouse lemur	MODERN SPECIES	27	ENSMICG00000044293	BIRC3 (ENSMICG00000002746) #7	YAP1 (ENSMICG00000031456)	CFAP300 (ENSMICG00000017739)	CEP126 (ENSMICG00000009111)	ANGPTL5 (ENSMICG00000031686)	TRPC6 (ENSMICG00000010349)	PGR (ENSMICG00000006331)	ARHGAP42 (ENSMICG00000010758)	ENSMICG00000015969	ENSMICG00000031298	ENSMICG00000029672	JRKL (ENSMICG00000041876) #20	CCDC82 (ENSMICG00000009411) #21	ENSMICG00000031831 #22	MAML2 (ENSMICG00000009400) #22	MTMR2 (ENSMICG00000009395) #23	CEP57 (ENSMICG00000030559) #24	FAM76B (ENSMICG00000036906) #25	SESN3 (ENSMICG00000008178) #26	CWC15 (ENSMICG00000042790) #28	ENSMICG00000036230	AMOTL1 (ENSMICG00000001878) #29	ENSMICG00000041717	PIWIL4 (ENSMICG00000006375) #30	FUT4 (ENSMICG00000043071) #31	C11orf97 (ENSMICG00000043866) #32	ANKRD49 (ENSMICG00000013505) #34	ENSMICG00000027455 #35	GPR83 (ENSMICG00000028902) #36	IZUMO1R (ENSMICG00000031112) #37
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Tree shrew	MODERN SPECIES	4545																MAML2 (ENSTBEG00000004935) #22	MTMR2 (ENSTBEG00000004099) #23	CEP57 (ENSTBEG00000003141) #24	FAM76B (ENSTBEG00000002188) #25
Glires	ANCESTRAL SPECIES	1	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084.u #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084.u #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00940000161871 #12	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT00940000162152	ENSGT00390000012084.u #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00520000058823 #32
Long-tailed chinchilla	MODERN SPECIES	119	MMP27 (ENSCLAG00000010798) #11	MMP20 (ENSCLAG00000013214) #10	MMP7 (ENSCLAG00000015356)	BIRC2 (ENSCLAG00000013394) #7	BIRC3 (ENSCLAG00000010783) #7	YAP1 (ENSCLAG00000011113)	CFAP300 (ENSCLAG00000013914)	CEP126 (ENSCLAG00000012819)	TRPC6 (ENSCLAG00000011949)	ENSCLAG00000013886	ARHGAP42 (ENSCLAG00000014100)	CNTN5 (ENSCLAG00000010625)	ENSCLAG00000018078	JRKL (ENSCLAG00000017853) #20	CCDC82 (ENSCLAG00000014287) #21	MAML2 (ENSCLAG00000014659) #22	MTMR2 (ENSCLAG00000011747) #23	ENSCLAG00000011257 #24	FAM76B (ENSCLAG00000010250) #25	SESN3 (ENSCLAG00000016066) #26
Degu	MODERN SPECIES	53	ENSODEG00000012579	YAP1 (ENSODEG00000012897)	ENSODEG00000013051	CFAP300 (ENSODEG00000014307)	CEP126 (ENSODEG00000014031)	ENSODEG00000013426	TRPC6 (ENSODEG00000014288)	ENSODEG00000013619	ARHGAP42 (ENSODEG00000013928)	ENSODEG00000013901	CNTN5 (ENSODEG00000014105)	ENSODEG00000012986	ENSODEG00000014051	JRKL (ENSODEG00000020217) #20	CCDC82 (ENSODEG00000012847) #21	MAML2 (ENSODEG00000015630) #22	ENSODEG00000020097	MTMR2 (ENSODEG00000013402) #23	CEP57 (ENSODEG00000013214) #24	FAM76B (ENSODEG00000013436) #25	ENSODEG00000014506	SESN3 (ENSODEG00000014538) #26	KDM4D (ENSODEG00000012937)	ENSODEG00000014060 #28	ENSODEG00000020081	AMOTL1 (ENSODEG00000013464) #29	PIWIL4 (ENSODEG00000013015) #30	ENSODEG00000020227	MRE11 (ENSODEG00000014786) #35	ENSODEG00000013277	ENSODEG00000014210
Guinea pig	MODERN SPECIES	19	MMP8 (ENSCPOG00000013813) #12	MMP27 (ENSCPOG00000035593) #11	MMP20 (ENSCPOG00000036970) #10	ENSCPOG00000038069	BIRC2 (ENSCPOG00000010349) #7	BIRC3 (ENSCPOG00000034907) #7	YAP1 (ENSCPOG00000033105)	CFAP300 (ENSCPOG00000011737)	CEP126 (ENSCPOG00000001844)	ANGPTL5 (ENSCPOG00000001842)	TRPC6 (ENSCPOG00000005560)	ENSCPOG00000030258	ARHGAP42 (ENSCPOG00000007842)	CNTN5 (ENSCPOG00000011322)	CCDC82 (ENSCPOG00000033086) #21	MAML2 (ENSCPOG00000008516) #22	MTMR2 (ENSCPOG00000008505) #23	CEP57 (ENSCPOG00000008497) #24	FAM76B (ENSCPOG00000040456) #25	SESN3 (ENSCPOG00000019467) #26	ENDOD1 (ENSCPOG00000002204) #27
Naked mole-rat female	MODERN SPECIES	24	YAP1 (ENSHGLG00000000291)	ENSHGLG00000019794	ENSHGLG00000005333	BIRC3 (ENSHGLG00000004954) #7	BIRC2 (ENSHGLG00000004179) #7	ENSHGLG00000044313	ENSHGLG00000047684 #8	MMP7 (ENSHGLG00000003863)	ENSHGLG00000003570 #10	ENSHGLG00000042812	ENSHGLG00000041631	ENSHGLG00000041058	CCDC82 (ENSHGLG00000013992) #21	JRKL (ENSHGLG00000049214) #20	ENSHGLG00000049135	MAML2 (ENSHGLG00000017672) #22	ENSHGLG00000050231	ENSHGLG00000015893 #23	ENSHGLG00000017903 #24	FAM76B (ENSHGLG00000013754) #25	ENSHGLG00000050488	ENSHGLG00000019419 #26	ENSHGLG00000018327	ENSHGLG00000017774	ENSHGLG00000046281	ENSHGLG00000043269 #27	ENSHGLG00000032452	ENSHGLG00000035638 #28	ENSHGLG00000049265	AMOTL1 (ENSHGLG00000010959) #29	ENSHGLG00000008729
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.h	ENSGT00940000162152.g.b	ENSGT00940000162152.g.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35
Eurasian red squirrel	MODERN SPECIES	2	BIRC3 (ENSSVLG00005013872) #7	YAP1 (ENSSVLG00005013738)	CFAP300 (ENSSVLG00005013383)	CEP126 (ENSSVLG00005013261)	ANGPTL5 (ENSSVLG00005013174)	ENSSVLG00005013071	TRPC6 (ENSSVLG00005012644)	ENSSVLG00005012488	PGR (ENSSVLG00005012195)	ARHGAP42 (ENSSVLG00005012065)	CNTN5 (ENSSVLG00005011074)	ENSSVLG00005010963	ENSSVLG00005010908	JRKL (ENSSVLG00005010894) #20	CCDC82 (ENSSVLG00005010580) #21	ENSSVLG00005010533 #22	MTMR2 (ENSSVLG00005010367) #23	CEP57 (ENSSVLG00005010241) #24	ENSSVLG00005010116 #25	SESN3 (ENSSVLG00005009932) #26	ENDOD1 (ENSSVLG00005009881) #27	ENSSVLG00005009855	KDM4D (ENSSVLG00005009838)	CWC15 (ENSSVLG00005009802) #28	AMOTL1 (ENSSVLG00005009738) #29	PIWIL4 (ENSSVLG00005009583) #30	FUT4 (ENSSVLG00005009540) #31	C11orf97 (ENSSVLG00005009503) #32	ANKRD49 (ENSSVLG00005009488) #34	ENSSVLG00005009454	MRE11 (ENSSVLG00005009395) #35
Marmotini	ANCESTRAL SPECIES	20	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b.e #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.h	ENSGT00940000162152.g.b	ENSGT00940000162152.g.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35
Marmotini_b	ANCESTRAL SPECIES	155														ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152.g.b	ENSGT00940000162152.g.a	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	276													JRKL (ENSUPAG00010014875) #20	CCDC82 (ENSUPAG00010014877) #21	ENSUPAG00010014913 #22	ENSUPAG00010014925 #22	MTMR2 (ENSUPAG00010014934) #23	CEP57 (ENSUPAG00010014984) #24	FAM76B (ENSUPAG00010015021) #25
Arctic ground squirrel	MODERN SPECIES	276														JRKL (ENSUPAG00010014875) #20	CCDC82 (ENSUPAG00010014877) #21	ENSUPAG00010014913 #22	ENSUPAG00010014925 #22	MTMR2 (ENSUPAG00010014934) #23	CEP57 (ENSUPAG00010014984) #24	FAM76B (ENSUPAG00010015021) #25
Squirrel	MODERN SPECIES	300													ENSSTOG00000029995	JRKL (ENSSTOG00000026474) #20	CCDC82 (ENSSTOG00000002309) #21	ENSSTOG00000033445 #22	MTMR2 (ENSSTOG00000002284) #23	CEP57 (ENSSTOG00000002278) #24	FAM76B (ENSSTOG00000023725) #25	SESN3 (ENSSTOG00000000033) #26	ENDOD1 (ENSSTOG00000000032) #27
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	25	TMEM123 (ENSMMMG00000002579) #8	ENSMMMG00000002595 #7	BIRC3 (ENSMMMG00000002693) #7	YAP1 (ENSMMMG00000002718)	CFAP300 (ENSMMMG00000002751)	CEP126 (ENSMMMG00000002769)	ANGPTL5 (ENSMMMG00000002794)	TRPC6 (ENSMMMG00000002831)	PGR (ENSMMMG00000002898)	ARHGAP42 (ENSMMMG00000002945)	CNTN5 (ENSMMMG00000003014)	ENSMMMG00000003243	JRKL (ENSMMMG00000003254) #20	CCDC82 (ENSMMMG00000003266) #21	ENSMMMG00000003341 #22	ENSMMMG00000003357 #22	MTMR2 (ENSMMMG00000003375) #23	CEP57 (ENSMMMG00000003431) #24	FAM76B (ENSMMMG00000003496) #25	ENSMMMG00000003554	SESN3 (ENSMMMG00000003584) #26	ENDOD1 (ENSMMMG00000003657) #27	ENSMMMG00000003662	ENSMMMG00000003674	ENSMMMG00000003680	ENSMMMG00000003692	CWC15 (ENSMMMG00000003695) #28	AMOTL1 (ENSMMMG00000003717) #29	PIWIL4 (ENSMMMG00000003741) #30	FUT4 (ENSMMMG00000003775) #31	C11orf97 (ENSMMMG00000003791) #32
Alpin marmot	MODERN SPECIES	25	MMP7 (ENSMMMG00000002551)	TMEM123 (ENSMMMG00000002579) #8	ENSMMMG00000002595 #7	BIRC3 (ENSMMMG00000002693) #7	YAP1 (ENSMMMG00000002718)	CFAP300 (ENSMMMG00000002751)	CEP126 (ENSMMMG00000002769)	ANGPTL5 (ENSMMMG00000002794)	TRPC6 (ENSMMMG00000002831)	PGR (ENSMMMG00000002898)	ARHGAP42 (ENSMMMG00000002945)	CNTN5 (ENSMMMG00000003014)	ENSMMMG00000003243	JRKL (ENSMMMG00000003254) #20	CCDC82 (ENSMMMG00000003266) #21	ENSMMMG00000003341 #22	ENSMMMG00000003357 #22	MTMR2 (ENSMMMG00000003375) #23	CEP57 (ENSMMMG00000003431) #24	FAM76B (ENSMMMG00000003496) #25	ENSMMMG00000003554	SESN3 (ENSMMMG00000003584) #26	ENDOD1 (ENSMMMG00000003657) #27	ENSMMMG00000003662	ENSMMMG00000003674	ENSMMMG00000003680	ENSMMMG00000003692	CWC15 (ENSMMMG00000003695) #28	AMOTL1 (ENSMMMG00000003717) #29	PIWIL4 (ENSMMMG00000003741) #30	FUT4 (ENSMMMG00000003775) #31
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Kangaroo rat	MODERN SPECIES	329	Mmp3 (ENSDORG00000015114) #14	ENSDORG00000015112 #13	Mmp10 (ENSDORG00000015107) #14	Mmp8 (ENSDORG00000015105) #12	Mmp27 (ENSDORG00000015102) #11	Mmp20 (ENSDORG00000015101) #10	Mmp7 (ENSDORG00000001516)	Birc2 (ENSDORG00000010334) #7	Yap1 (ENSDORG00000023430)	Cfap300 (ENSDORG00000003243)	Cep126 (ENSDORG00000025333)	Trpc6 (ENSDORG00000005456)	Arhgap42 (ENSDORG00000014906)	Jrkl (ENSDORG00000012234) #20	Ccdc82 (ENSDORG00000016570) #21	Maml2 (ENSDORG00000013901) #22	Mtmr2 (ENSDORG00000001033) #23	Cep57 (ENSDORG00000001032) #24	Fam76b (ENSDORG00000004977) #25	Sesn3 (ENSDORG00000014812) #26	Cwc15 (ENSDORG00000011075) #28	Amotl1 (ENSDORG00000006612) #29	ENSDORG00000029165 #30	ENSDORG00000027168 #32	Ankrd49 (ENSDORG00000013373) #34
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Lesser Egyptian jerboa	MODERN SPECIES	87	Tmem123 (ENSJJAG00000014178) #8	ENSJJAG00000017306 #7	ENSJJAG00000021580 #7	ENSJJAG00000010414	ENSJJAG00000015982	Cfap300 (ENSJJAG00000022122)	Cep126 (ENSJJAG00000014011)	Trpc6 (ENSJJAG00000021679)	ENSJJAG00000002569	Pgr (ENSJJAG00000015786)	Arhgap42 (ENSJJAG00000023474)	ENSJJAG00000000229	ENSJJAG00000007185	Jrkl (ENSJJAG00000000663) #20	Ccdc82 (ENSJJAG00000017966) #21	ENSJJAG00000002824 #22	Mtmr2 (ENSJJAG00000009913) #23	Cep57 (ENSJJAG00000013938) #24	Fam76b (ENSJJAG00000017450) #25	Sesn3 (ENSJJAG00000019262) #26	ENSJJAG00000015656	ENSJJAG00000016968 #28	Amotl1 (ENSJJAG00000000834) #29	ENSJJAG00000002783	Fut4 (ENSJJAG00000015747) #31	1700012B09Rik (ENSJJAG00000020782) #32	Ankrd49 (ENSJJAG00000023374) #34	Mre11a (ENSJJAG00000009794) #35	Izumo1r (ENSJJAG00000018637) #37	Panx1 (ENSJJAG00000024378)	Hephl1 (ENSJJAG00000015710)
Muroidea	ANCESTRAL SPECIES	29	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00940000167787	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Cricetinae	ANCESTRAL SPECIES	45	ENSGT00940000161871 #12	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00940000167787	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Chinese hamster chok1gshd	MODERN SPECIES	202	ENSCGRG00001022513	Birc2 (ENSCGRG00001023266) #7	Birc3 (ENSCGRG00001008505) #7	Yap1 (ENSCGRG00001011573)	Cfap300 (ENSCGRG00001021391)	Cep126 (ENSCGRG00001023949)	Trpc6 (ENSCGRG00001006368)	Pgr (ENSCGRG00001019400)	Arhgap42 (ENSCGRG00001000196)	ENSCGRG00001007078	Cntn5 (ENSCGRG00001022628)	ENSCGRG00001023105	Jrkl (ENSCGRG00001010876) #20	Ccdc82 (ENSCGRG00001017832) #21	ENSCGRG00001023836	Maml2 (ENSCGRG00001007799) #22	Mtmr2 (ENSCGRG00001014347) #23	Cep57 (ENSCGRG00001022050) #24	Fam76b (ENSCGRG00001010539) #25	Sesn3 (ENSCGRG00001021337) #26	Endod1 (ENSCGRG00001000699) #27
Golden Hamster	MODERN SPECIES	688	Mmp12 (ENSMAUG00000008249)	Mmp3 (ENSMAUG00000011335) #14	ENSMAUG00000009988 #13	Mmp27 (ENSMAUG00000000778) #11	Mmp20 (ENSMAUG00000011367) #10	ENSMAUG00000016756 #14	Birc2 (ENSMAUG00000018063) #7	Cfap300 (ENSMAUG00000011879)	Cep126 (ENSMAUG00000013444)	Trpc6 (ENSMAUG00000014533)	Pgr (ENSMAUG00000019127)	Arhgap42 (ENSMAUG00000012529)	Cntn5 (ENSMAUG00000012675)	Jrkl (ENSMAUG00000016872) #20	Ccdc82 (ENSMAUG00000019538) #21	Maml2 (ENSMAUG00000012350) #22	Mtmr2 (ENSMAUG00000014568) #23	Cep57 (ENSMAUG00000016167) #24	Fam76b (ENSMAUG00000008271) #25
Cricetidae_B	ANCESTRAL SPECIES	58	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00940000167787	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27
Northern American deer mouse	MODERN SPECIES	20	Birc3 (ENSPEMG00000020508) #7	Yap1 (ENSPEMG00000022927)	Cfap300 (ENSPEMG00000021710)	Cep126 (ENSPEMG00000020512)	ENSPEMG00000027711	ENSPEMG00000029807	Trpc6 (ENSPEMG00000012248)	Pgr (ENSPEMG00000020732)	Arhgap42 (ENSPEMG00000021176)	ENSPEMG00000024722	Cntn5 (ENSPEMG00000011066)	Jrkl (ENSPEMG00000004693) #20	Ccdc82 (ENSPEMG00000021515) #21	ENSPEMG00000022148	ENSPEMG00000008656	ENSPEMG00000022875 #22	Mtmr2 (ENSPEMG00000018649) #23	Cep57 (ENSPEMG00000022447) #24	Fam76b (ENSPEMG00000028973) #25	ENSPEMG00000028670	Sesn3 (ENSPEMG00000009677) #26	ENSPEMG00000027788 #27
Prairie vole	MODERN SPECIES	13	Yap1 (ENSMOCG00000007486)	Cfap300 (ENSMOCG00000013197)	Cep126 (ENSMOCG00000013353)	ENSMOCG00000014609	ENSMOCG00000006458	Trpc6 (ENSMOCG00000021166)	Pgr (ENSMOCG00000016670)	Arhgap42 (ENSMOCG00000004053)	ENSMOCG00000008541	Cntn5 (ENSMOCG00000021354)	ENSMOCG00000021331	ENSMOCG00000022546	Jrkl (ENSMOCG00000004889) #20	Ccdc82 (ENSMOCG00000019062) #21	ENSMOCG00000019222	Maml2 (ENSMOCG00000021568) #22	Mtmr2 (ENSMOCG00000009930) #23	Cep57 (ENSMOCG00000005014) #24	Fam76b (ENSMOCG00000001551) #25	Sesn3 (ENSMOCG00000013595) #26	Endod1 (ENSMOCG00000016035) #27	Cwf19l2 (ENSMOCG00000010389)	Alkbh8 (ENSMOCG00000019349)	ENSMOCG00000021818	ENSMOCG00000015072	Vstm5 (ENSMOCG00000012686)	Med17 (ENSMOCG00000018802)	4931406C07Rik (ENSMOCG00000012170)	Taf1d (ENSMOCG00000014011)	Cep295 (ENSMOCG00000021770)	ENSMOCG00000021789
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Mus	ANCESTRAL SPECIES	4	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00900000143517	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00860000136210	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00900000143517	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00860000136210	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00900000143517	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Mouse	MODERN SPECIES	18	Mmp27 (ENSMUSG00000070323) #11	Mmp20 (ENSMUSG00000018620) #10	Mmp7 (ENSMUSG00000018623)	Tmem123 (ENSMUSG00000050912) #8	Birc2 (ENSMUSG00000057367) #7	Birc3 (ENSMUSG00000032000) #7	Yap1 (ENSMUSG00000053110)	Cfap300 (ENSMUSG00000053070)	Cep126 (ENSMUSG00000040729)	Trpc6 (ENSMUSG00000031997)	Pgr (ENSMUSG00000031870)	Arhgap42 (ENSMUSG00000050730)	Cntn5 (ENSMUSG00000039488)	Jrkl (ENSMUSG00000079083) #20	Ccdc82 (ENSMUSG00000079084) #21	Maml2 (ENSMUSG00000031925) #22	Gm17571 (ENSMUSG00000090592)	Mtmr2 (ENSMUSG00000031918) #23	Cep57 (ENSMUSG00000031922) #24	Fam76b (ENSMUSG00000037808) #25	Sesn3 (ENSMUSG00000032009) #26	Endod1 (ENSMUSG00000037419) #27	Kdm4d (ENSMUSG00000053914)	Cwc15 (ENSMUSG00000004096) #28	Amotl1 (ENSMUSG00000013076) #29	Piwil4 (ENSMUSG00000036912) #30	Fut4 (ENSMUSG00000049307) #31	1700012B09Rik (ENSMUSG00000031927) #32	Ankrd49 (ENSMUSG00000031931) #34	Mre11a (ENSMUSG00000031928) #35	Gpr83 (ENSMUSG00000031932) #36
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00860000136210	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00900000143517	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Steppe mouse	MODERN SPECIES	2555														Jrkl (ENSMSIG00000028346) #20	Ccdc82 (ENSMSIG00000028330) #21	Maml2 (ENSMSIG00000028308) #22	ENSMSIG00000028297	ENSMSIG00000028266 #23	Cep57 (ENSMSIG00000028236) #24	Fam76b (ENSMSIG00000028224) #25
spretus	MODERN SPECIES	18	Tmem123 (MGP_SPRETEiJ_G0032880) #8	MGP_SPRETEiJ_G0032881 #7	Birc3 (MGP_SPRETEiJ_G0032882) #7	Yap1 (MGP_SPRETEiJ_G0032883)	Cfap300 (MGP_SPRETEiJ_G0032884)	Cep126 (MGP_SPRETEiJ_G0032885)	MGP_SPRETEiJ_G0032886	Trpc6 (MGP_SPRETEiJ_G0032887)	Pgr (MGP_SPRETEiJ_G0032888)	MGP_SPRETEiJ_G0032889	Arhgap42 (MGP_SPRETEiJ_G0032890)	Cntn5 (MGP_SPRETEiJ_G0032891)	Jrkl (MGP_SPRETEiJ_G0032892) #20	Ccdc82 (MGP_SPRETEiJ_G0032893) #21	MGP_SPRETEiJ_G0032894	Maml2 (MGP_SPRETEiJ_G0032895) #22	Mtmr2 (MGP_SPRETEiJ_G0032896) #23	Cep57 (MGP_SPRETEiJ_G0032897) #24	Fam76b (MGP_SPRETEiJ_G0032898) #25	Sesn3 (MGP_SPRETEiJ_G0032899) #26	Endod1 (MGP_SPRETEiJ_G0032900) #27	Kdm4d (MGP_SPRETEiJ_G0032901)	Cwc15 (MGP_SPRETEiJ_G0032902) #28	Amotl1 (MGP_SPRETEiJ_G0032903) #29	Piwil4 (MGP_SPRETEiJ_G0032904) #30	Fut4 (MGP_SPRETEiJ_G0032905) #31	1700012B09Rik (MGP_SPRETEiJ_G0032906) #32	Ankrd49 (MGP_SPRETEiJ_G0032907) #34	Mre11a (MGP_SPRETEiJ_G0032908) #35	MGP_SPRETEiJ_G0032909 #36	Izumo1r (MGP_SPRETEiJ_G0032910) #37
Ryukyu mouse	MODERN SPECIES	18	Tmem123 (MGP_CAROLIEiJ_G0031760) #8	MGP_CAROLIEiJ_G0031761 #7	MGP_CAROLIEiJ_G0031762 #7	Yap1 (MGP_CAROLIEiJ_G0031763)	Cfap300 (MGP_CAROLIEiJ_G0031764)	Cep126 (MGP_CAROLIEiJ_G0031765)	MGP_CAROLIEiJ_G0031766	Trpc6 (MGP_CAROLIEiJ_G0031767)	Pgr (MGP_CAROLIEiJ_G0031768)	MGP_CAROLIEiJ_G0031769	Arhgap42 (MGP_CAROLIEiJ_G0031770)	Cntn5 (MGP_CAROLIEiJ_G0031771)	Jrkl (MGP_CAROLIEiJ_G0031772) #20	Ccdc82 (MGP_CAROLIEiJ_G0031773) #21	MGP_CAROLIEiJ_G0031774	Maml2 (MGP_CAROLIEiJ_G0031775) #22	Mtmr2 (MGP_CAROLIEiJ_G0031776) #23	Cep57 (MGP_CAROLIEiJ_G0031777) #24	Fam76b (MGP_CAROLIEiJ_G0031778) #25	Sesn3 (MGP_CAROLIEiJ_G0031779) #26	Endod1 (MGP_CAROLIEiJ_G0031780) #27	Kdm4d (MGP_CAROLIEiJ_G0031781)	Cwc15 (MGP_CAROLIEiJ_G0031782) #28	Amotl1 (MGP_CAROLIEiJ_G0031783) #29	Piwil4 (MGP_CAROLIEiJ_G0031784) #30	Fut4 (MGP_CAROLIEiJ_G0031785) #31	1700012B09Rik (MGP_CAROLIEiJ_G0031786) #32	Ankrd49 (MGP_CAROLIEiJ_G0031787) #34	Mre11a (MGP_CAROLIEiJ_G0031788) #35	Gpr83 (MGP_CAROLIEiJ_G0031789) #36	Izumo1r (MGP_CAROLIEiJ_G0031790) #37
Shrew mouse	MODERN SPECIES	1	Mmp20 (MGP_PahariEiJ_G0014636) #10	Mmp7 (MGP_PahariEiJ_G0014637)	Tmem123 (MGP_PahariEiJ_G0014638) #8	MGP_PahariEiJ_G0014639	Birc3 (MGP_PahariEiJ_G0014640) #7	Yap1 (MGP_PahariEiJ_G0014641)	Cfap300 (MGP_PahariEiJ_G0014642)	Cep126 (MGP_PahariEiJ_G0014643)	Trpc6 (MGP_PahariEiJ_G0014644)	Pgr (MGP_PahariEiJ_G0014645)	Arhgap42 (MGP_PahariEiJ_G0014646)	MGP_PahariEiJ_G0014647	Jrkl (MGP_PahariEiJ_G0014648) #20	Ccdc82 (MGP_PahariEiJ_G0014649) #21	MGP_PahariEiJ_G0014650	Maml2 (MGP_PahariEiJ_G0014651) #22	Mtmr2 (MGP_PahariEiJ_G0014652) #23	Cep57 (MGP_PahariEiJ_G0014653) #24	Fam76b (MGP_PahariEiJ_G0014654) #25	Sesn3 (MGP_PahariEiJ_G0014655) #26	Endod1 (MGP_PahariEiJ_G0014656) #27	Kdm4d (MGP_PahariEiJ_G0014657)	Cwc15 (MGP_PahariEiJ_G0014658) #28	Amotl1 (MGP_PahariEiJ_G0014659) #29	Piwil4 (MGP_PahariEiJ_G0014660) #30	Fut4 (MGP_PahariEiJ_G0014661) #31	1700012B09Rik (MGP_PahariEiJ_G0014662) #32	Ankrd49 (MGP_PahariEiJ_G0014663) #34	Mre11a (MGP_PahariEiJ_G0014664) #35	Gpr83 (MGP_PahariEiJ_G0014665) #36	Izumo1r (MGP_PahariEiJ_G0014666) #37
Rat	MODERN SPECIES	18	Birc2 (ENSRNOG00000010602) #7	Birc3 (ENSRNOG00000005731) #7	Yap1 (ENSRNOG00000005933)	Cfap300 (ENSRNOG00000043410)	Cep126 (ENSRNOG00000021839)	ENSRNOG00000062568	LOC100362400 (ENSRNOG00000032531)	Trpc6 (ENSRNOG00000006324)	Pgr (ENSRNOG00000006831)	Arhgap42 (ENSRNOG00000026821)	ENSRNOG00000063507	Cntn5 (ENSRNOG00000007038)	ENSRNOG00000064384	Jrkl (ENSRNOG00000047133) #20	Ccdc82 (ENSRNOG00000005713) #21	Maml2 (ENSRNOG00000005879) #22	Mtmr2 (ENSRNOG00000005923) #23	Cep57 (ENSRNOG00000006792) #24	Fam76b (ENSRNOG00000024863) #25	Sesn3 (ENSRNOG00000008173) #26	Endod1 (ENSRNOG00000024757) #27	LOC108348070 (ENSRNOG00000045905)	Cwc15 (ENSRNOG00000008490) #28	Amotl1 (ENSRNOG00000008990) #29	Piwil4 (ENSRNOG00000009043) #30	Fut4 (ENSRNOG00000009157) #31	C8h11orf97 (ENSRNOG00000009203) #32	Ankrd49 (ENSRNOG00000009233) #34	Mre11 (ENSRNOG00000009506) #35	Gpr83 (ENSRNOG00000030318) #36	Izumo1r (ENSRNOG00000019894) #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1547														Jrkl (ENSNGAG00000018080) #20	Ccdc82 (ENSNGAG00000018253) #21	ENSNGAG00000017436 #22	ENSNGAG00000000408	ENSNGAG00000017608 #22	ENSNGAG00000020338 #23	Cep57 (ENSNGAG00000009593) #24	Fam76b (ENSNGAG00000022558) #25
Upper Galilee mountains blind mole rat	MODERN SPECIES	1547												Jrkl (ENSNGAG00000018080) #20	Ccdc82 (ENSNGAG00000018253) #21	ENSNGAG00000017436 #22	ENSNGAG00000000408	ENSNGAG00000017608 #22	ENSNGAG00000020338 #23	Cep57 (ENSNGAG00000009593) #24	Fam76b (ENSNGAG00000022558) #25
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000161871 #12	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175.i.b #7	ENSGT00940000154175.i.a #7	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00940000161513 #20	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00940000162152	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336.d #36	ENSGT00950000183144.A.j #37
Rabbit	MODERN SPECIES		ENSOCUG00000026522	ENSOCUG00000024698	TRPC6 (ENSOCUG00000017832)	PGR (ENSOCUG00000014693)	ARHGAP42 (ENSOCUG00000006927)	ENSOCUG00000037422	ENSOCUG00000007222	CNTN5 (ENSOCUG00000015047)	ENSOCUG00000036924	ENSOCUG00000037475	ENSOCUG00000033547	ENSOCUG00000032795	ENSOCUG00000026047	JRKL (ENSOCUG00000024211) #20	CCDC82 (ENSOCUG00000007312) #21	MAML2 (ENSOCUG00000010820) #22	MTMR2 (ENSOCUG00000014568) #23	CEP57 (ENSOCUG00000014557) #24	FAM76B (ENSOCUG00000014549) #25	ENSOCUG00000036784	SESN3 (ENSOCUG00000026640) #26	ENDOD1 (ENSOCUG00000014040) #27	ENSOCUG00000038702	ENSOCUG00000035381	ENSOCUG00000031183	ENSOCUG00000032220	ENSOCUG00000001631	CWC15 (ENSOCUG00000001629) #28	AMOTL1 (ENSOCUG00000001078) #29	PIWIL4 (ENSOCUG00000002860) #30	FUT4 (ENSOCUG00000014204) #31
Pika	MODERN SPECIES	3019																MAML2 (ENSOPRG00000015172) #22	MTMR2 (ENSOPRG00000015146) #23	CEP57 (ENSOPRG00000015118) #24
Platypus	MODERN SPECIES	12	MMP1 (ENSOANG00000010480) #13	MMP8 (ENSOANG00000010484) #12	ENSOANG00000047319	ENSOANG00000046987 #8	ENSOANG00000010486 #7	YAP1 (ENSOANG00000010488)	CFAP300 (ENSOANG00000010489)	ENSOANG00000010490	ANGPTL5 (ENSOANG00000010491)	TRPC6 (ENSOANG00000010492)	ENSOANG00000010494	ARHGAP42 (ENSOANG00000010495)	CNTN5 (ENSOANG00000010496)	ENSOANG00000010497	ENSOANG00000043963 ##22	MAML2 (ENSOANG00000010498) #22	MTMR2 (ENSOANG00000010499) #23	CEP57 (ENSOANG00000040575) #24	FAM76B (ENSOANG00000045559) #25	SESN3 (ENSOANG00000010503) #26	ENSOANG00000010505 #27	ENSOANG00000010405 #27	ENSOANG00000010404 #28	AMOTL1 (ENSOANG00000010403) #29	ENSOANG00000038002 #31	ENSOANG00000029843 #32	ANKRD49 (ENSOANG00000010402) #34	MRE11 (ENSOANG00000010399) #35	GPR83 (ENSOANG00000040634) #36	PANX1 (ENSOANG00000011723)	HEPHL1 (ENSOANG00000011719)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00940000175059	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a.jc ##13	ENSGT00940000154907.a.a.ic ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a.jc ##13	ENSGT00940000154907.a.a.ic ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994.c
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000009452 #8	ENSPMRG00000009446 #7	YAP1 (ENSPMRG00000009439)	CFAP300 (ENSPMRG00000009428)	ENSPMRG00000009421	ANGPTL5 (ENSPMRG00000009416)	TRPC6 (ENSPMRG00000009410)	PGR (ENSPMRG00000009404)	ARHGAP42 (ENSPMRG00000009371)	ENSPMRG00000009363	ENSPMRG00000009362	CNTN5 (ENSPMRG00000008844)	ENSPMRG00000008746	CCDC82 (ENSPMRG00000008743) #21	ENSPMRG00000008736	MAML2 (ENSPMRG00000008730) #22	MTMR2 (ENSPMRG00000008721) #23	CEP57 (ENSPMRG00000008718) #24	FAM76B (ENSPMRG00000008712) #25	ENSPMRG00000008711	SESN3 (ENSPMRG00000008702) #26	ENDOD1 (ENSPMRG00000008697) #27	CWC15 (ENSPMRG00000008694) #28	AMOTL1 (ENSPMRG00000008682) #29	ENSPMRG00000008502 #30	FUT4 (ENSPMRG00000008469) #31	ANKRD49 (ENSPMRG00000008465) #34	MRE11 (ENSPMRG00000008460) #35	GPR83 (ENSPMRG00000008457) #36	ENSPMRG00000008454	ENSPMRG00000008452
Argentine black and white tegu	MODERN SPECIES	24	ZC3H12C (ENSSMRG00000010798)	RDX (ENSSMRG00000010790)	FDX1 (ENSSMRG00000010785)	ENSSMRG00000010777	ENSSMRG00000010775 #8	ENSSMRG00000010773 #7	YAP1 (ENSSMRG00000010770)	ENSSMRG00000010748	ENSSMRG00000010744	ANGPTL5 (ENSSMRG00000010741)	TRPC6 (ENSSMRG00000010734)	PGR (ENSSMRG00000010697)	ARHGAP42 (ENSSMRG00000010680)	CNTN5 (ENSSMRG00000010264)	CCDC82 (ENSSMRG00000010232) #21	MAML2 (ENSSMRG00000010230) #22	MTMR2 (ENSSMRG00000010222) #23	CEP57 (ENSSMRG00000010212) #24	FAM76B (ENSSMRG00000010211) #25	SESN3 (ENSSMRG00000010206) #26	ENDOD1 (ENSSMRG00000010205) #27	CWC15 (ENSSMRG00000010192) #28	AMOTL1 (ENSSMRG00000010190) #29	PIWIL4 (ENSSMRG00000009898) #30	FUT4 (ENSSMRG00000009896) #31	C11orf97 (ENSSMRG00000009893) #32	ANKRD49 (ENSSMRG00000009883) #34	MRE11 (ENSSMRG00000009882) #35	GPR83 (ENSSMRG00000009866) #36	PANX1 (ENSSMRG00000009865)	ENSSMRG00000009859
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a.jc ##13	ENSGT00940000154907.a.a.ic ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00940000157994.c
Lizard	MODERN SPECIES	2	ENSACAG00000035329	ANGPTL5 (ENSACAG00000012817)	ENSACAG00000038711	TRPC6 (ENSACAG00000012822)	ENSACAG00000044869	PGR (ENSACAG00000013594)	ARHGAP42 (ENSACAG00000013753)	ENSACAG00000022852	ENSACAG00000038716	ENSACAG00000041932	CNTN5 (ENSACAG00000013104)	ENSACAG00000041554	ENSACAG00000007897	ENSACAG00000037709	CCDC82 (ENSACAG00000013514) #21	MAML2 (ENSACAG00000013555) #22	CEP57 (ENSACAG00000013700) #24	FAM76B (ENSACAG00000028830) #25	SESN3 (ENSACAG00000013850) #26	ENDOD1 (ENSACAG00000013977) #27	ENSACAG00000037254	CWC15 (ENSACAG00000013987) #28	AMOTL1 (ENSACAG00000014015) #29	ENSACAG00000035085	PIWIL4 (ENSACAG00000014070) #30	ENSACAG00000041426	FUT4 (ENSACAG00000014099) #31	C11orf97 (ENSACAG00000028473) #32	ANKRD49 (ENSACAG00000014101) #34	MRE11 (ENSACAG00000014110) #35	ENSACAG00000014226
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a.jc ##13	ENSGT00940000154907.a.a.ic ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00390000015701
Indian cobra	MODERN SPECIES	4	MMP27 (ENSNNAG00000011591) #11	MMP20 (ENSNNAG00000011646) #10	ENSNNAG00000011741 ##13	TMEM123 (ENSNNAG00000011768) #8	ENSNNAG00000011785 #7	YAP1 (ENSNNAG00000011815)	CFAP300 (ENSNNAG00000011854)	ENSNNAG00000011955	ANGPTL5 (ENSNNAG00000011981)	TRPC6 (ENSNNAG00000012027)	PGR (ENSNNAG00000012172)	ARHGAP42 (ENSNNAG00000012473)	CNTN5 (ENSNNAG00000012599)	ENSNNAG00000012902	CCDC82 (ENSNNAG00000012921) #21	MAML2 (ENSNNAG00000003081) #22	ENSNNAG00000003093	MTMR2 (ENSNNAG00000003100) #23	CEP57 (ENSNNAG00000003119) #24	FAM76B (ENSNNAG00000003133) #25	ENSNNAG00000003155 #26	ENDOD1 (ENSNNAG00000003169) #27	CWC15 (ENSNNAG00000003179) #28	AMOTL1 (ENSNNAG00000003274) #29	PIWIL4 (ENSNNAG00000003845) #30	FUT4 (ENSNNAG00000003996) #31	C11orf97 (ENSNNAG00000004006) #32	ANKRD49 (ENSNNAG00000004023) #34	ENSNNAG00000004034 #35	ENSNNAG00000004046 #35	ENSNNAG00000004076
Elapidae_a	ANCESTRAL SPECIES	41	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a.jc ##13	ENSGT00940000154907.a.a.ic ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00390000015701	ENSGT00940000166029
Acanthophiinae	ANCESTRAL SPECIES	42	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000154907.a.a.jc ##13	ENSGT00940000154907.a.a.ic ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00390000015701	ENSGT00940000166029
Mainland tiger snake	MODERN SPECIES	75	MMP20 (ENSNSUG00000006145) #10	ENSNSUG00000006143 ##13	ENSNSUG00000006090 ##13	TMEM123 (ENSNSUG00000006089) #8	ENSNSUG00000006049 #7	YAP1 (ENSNSUG00000006048)	CFAP300 (ENSNSUG00000006047)	ENSNSUG00000006044	ENSNSUG00000006043	ANGPTL5 (ENSNSUG00000006042)	TRPC6 (ENSNSUG00000006041)	PGR (ENSNSUG00000006026)	ARHGAP42 (ENSNSUG00000006025)	CNTN5 (ENSNSUG00000006024)	CCDC82 (ENSNSUG00000006023) #21	MAML2 (ENSNSUG00000006022) #22	MTMR2 (ENSNSUG00000006021) #23	CEP57 (ENSNSUG00000006020) #24	FAM76B (ENSNSUG00000006019) #25	SESN3 (ENSNSUG00000005777) #26	ENSNSUG00000005775 #27	CWC15 (ENSNSUG00000005774) #28	AMOTL1 (ENSNSUG00000005735) #29	PIWIL4 (ENSNSUG00000005734) #30
Eastern brown snake	MODERN SPECIES	33	MMP20 (ENSPTXG00000004974) #10	ENSPTXG00000004971 ##13	ENSPTXG00000004969 ##13	TMEM123 (ENSPTXG00000004967) #8	ENSPTXG00000004966 #7	YAP1 (ENSPTXG00000004962)	CFAP300 (ENSPTXG00000004955)	ENSPTXG00000004953	ANGPTL5 (ENSPTXG00000004951)	TRPC6 (ENSPTXG00000004918)	PGR (ENSPTXG00000004915)	ARHGAP42 (ENSPTXG00000004913)	CNTN5 (ENSPTXG00000004808)	ENSPTXG00000004802	CCDC82 (ENSPTXG00000004800) #21	MAML2 (ENSPTXG00000004798) #22	MTMR2 (ENSPTXG00000004795) #23	CEP57 (ENSPTXG00000004793) #24	FAM76B (ENSPTXG00000004789) #25	SESN3 (ENSPTXG00000004788) #26	ENDOD1 (ENSPTXG00000004786) #27	CWC15 (ENSPTXG00000004785) #28	AMOTL1 (ENSPTXG00000004778) #29	PIWIL4 (ENSPTXG00000004775) #30	FUT4 (ENSPTXG00000004772) #31	C11orf97 (ENSPTXG00000004770) #32	ANKRD49 (ENSPTXG00000004769) #34	MRE11 (ENSPTXG00000004736) #35	ENSPTXG00000004732	ENSPTXG00000004730	HEPHL1 (ENSPTXG00000004241)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	9575																ENSLLTG00000013241 #22
Blue-lipped sea krait	MODERN SPECIES	3026																ENSLLTG00000018076 #22
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1905														ENSSPUG00000018764	ENSSPUG00000018761 #22	ENSSPUG00000018754 #22
tuatara	MODERN SPECIES	1905															ENSSPUG00000018764	ENSSPUG00000018761 #22	ENSSPUG00000018754 #22
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000161159 #11	ENSGT00940000161277 #10	ENSGT00940000156340.b #9	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994
Aves	ANCESTRAL SPECIES		ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Great tit	MODERN SPECIES		ENSPMJG00000017838	MMP1 (ENSPMJG00000017839) #13	MMP27 (ENSPMJG00000017840) #11	ENSPMJG00000017841 ##13	TMEM123 (ENSPMJG00000017842) #8	ENSPMJG00000017843 #7	YAP1 (ENSPMJG00000017845)	CFAP300 (ENSPMJG00000017846)	ENSPMJG00000017848	ANGPTL5 (ENSPMJG00000017849)	TRPC6 (ENSPMJG00000017850)	PGR (ENSPMJG00000017851)	ARHGAP42 (ENSPMJG00000017852)	CNTN5 (ENSPMJG00000017853)	CCDC82 (ENSPMJG00000017854) #21	MAML2 (ENSPMJG00000017855) #22	MTMR2 (ENSPMJG00000017856) #23	CEP57 (ENSPMJG00000017857) #24	FAM76B (ENSPMJG00000017858) #25	SESN3 (ENSPMJG00000017859) #26	ENDOD1 (ENSPMJG00000017860) #27	CWC15 (ENSPMJG00000017862) #28	AMOTL1 (ENSPMJG00000017863) #29	FUT4 (ENSPMJG00000017864) #31	ENSPMJG00000017865	ANKRD49 (ENSPMJG00000017866) #34	MRE11 (ENSPMJG00000017867) #35	GPR83 (ENSPMJG00000017868) #36	PANX1 (ENSPMJG00000017869)	ENSPMJG00000017870	ENSPMJG00000017871
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Flycatcher	MODERN SPECIES		ENSFALG00000000394 #15	MMP1 (ENSFALG00000000382) #13	MMP27 (ENSFALG00000000375) #11	ENSFALG00000000372 ##13	ENSFALG00000000371	ENSFALG00000000370 #7	YAP1 (ENSFALG00000000364)	CFAP300 (ENSFALG00000000361)	ENSFALG00000000358	ANGPTL5 (ENSFALG00000000357)	TRPC6 (ENSFALG00000000356)	PGR (ENSFALG00000000354)	ARHGAP42 (ENSFALG00000000353)	CNTN5 (ENSFALG00000000348)	CCDC82 (ENSFALG00000024899) #21	MAML2 (ENSFALG00000000339) #22	MTMR2 (ENSFALG00000000338) #23	CEP57 (ENSFALG00000000337) #24	FAM76B (ENSFALG00000000336) #25	SESN3 (ENSFALG00000000333) #26	ENDOD1 (ENSFALG00000000330) #27	CWC15 (ENSFALG00000027709) #28	AMOTL1 (ENSFALG00000000320) #29	FUT4 (ENSFALG00000014231) #31	ENSFALG00000020356	ANKRD49 (ENSFALG00000027188) #34	MRE11 (ENSFALG00000000315) #35	GPR83 (ENSFALG00000000313) #36	PANX1 (ENSFALG00000000311)	HEPHL1 (ENSFALG00000000307)	ENSFALG00000025897
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Common canary	MODERN SPECIES	4	MMP1 (ENSSCAG00000004003) #13	MMP27 (ENSSCAG00000003998) #11	ENSSCAG00000003992 ##13	TMEM123 (ENSSCAG00000003984) #8	ENSSCAG00000003981 #7	YAP1 (ENSSCAG00000003972)	CFAP300 (ENSSCAG00000003962)	ENSSCAG00000003957	ANGPTL5 (ENSSCAG00000003952)	TRPC6 (ENSSCAG00000003932)	PGR (ENSSCAG00000003909)	ARHGAP42 (ENSSCAG00000003892)	ENSSCAG00000003880	CNTN5 (ENSSCAG00000003870)	CCDC82 (ENSSCAG00000003858) #21	ENSSCAG00000003855 #22	MTMR2 (ENSSCAG00000003835) #23	CEP57 (ENSSCAG00000003826) #24	FAM76B (ENSSCAG00000003820) #25	SESN3 (ENSSCAG00000003813) #26	ENDOD1 (ENSSCAG00000003802) #27	CWC15 (ENSSCAG00000003798) #28	AMOTL1 (ENSSCAG00000003677) #29	FUT4 (ENSSCAG00000003662) #31	ENSSCAG00000003659	ANKRD49 (ENSSCAG00000003657) #34	MRE11 (ENSSCAG00000003648) #35	GPR83 (ENSSCAG00000003647) #36	PANX1 (ENSSCAG00000003636)	HEPHL1 (ENSSCAG00000003621)	ENSSCAG00000003613
Zebra finch	MODERN SPECIES		MMP1 (ENSTGUG00000012737) #13	MMP27 (ENSTGUG00000023611) #11	ENSTGUG00000018460 #16	TMEM123 (ENSTGUG00000027337) #8	ENSTGUG00000012745 #7	YAP1 (ENSTGUG00000012754)	CFAP300 (ENSTGUG00000012760)	ENSTGUG00000012764	ANGPTL5 (ENSTGUG00000024680)	ENSTGUG00000022925	TRPC6 (ENSTGUG00000012766)	PGR (ENSTGUG00000012778)	ARHGAP42 (ENSTGUG00000012788)	CNTN5 (ENSTGUG00000012792)	CCDC82 (ENSTGUG00000012800) #21	MAML2 (ENSTGUG00000012803) #22	MTMR2 (ENSTGUG00000012806) #23	CEP57 (ENSTGUG00000024409) #24	FAM76B (ENSTGUG00000012811) #25	SESN3 (ENSTGUG00000024822) #26	ENDOD1 (ENSTGUG00000026431) #27	CWC15 (ENSTGUG00000029544) #28	AMOTL1 (ENSTGUG00000012818) #29	FUT4 (ENSTGUG00000027501) #31	C11orf97 (ENSTGUG00000022175) #32	ANKRD49 (ENSTGUG00000012823) #34	MRE11 (ENSTGUG00000012824) #35	GPR83 (ENSTGUG00000026792) #36	PANX1 (ENSTGUG00000012828)	ENSTGUG00000012838	ENSTGUG00000012842
Medium ground finch	MODERN SPECIES	5	ENSGFOG00000002382 #15	MMP1 (ENSGFOG00000002501) #13	MMP27 (ENSGFOG00000002634) #11	ENSGFOG00000002758 #16	TMEM123 (ENSGFOG00000002771) #8	ENSGFOG00000002791 #7	YAP1 (ENSGFOG00000002832)	CFAP300 (ENSGFOG00000002923)	ENSGFOG00000002958	ANGPTL5 (ENSGFOG00000003011)	TRPC6 (ENSGFOG00000003038)	ARHGAP42 (ENSGFOG00000003106)	CNTN5 (ENSGFOG00000003137)	ENSGFOG00000003199	CCDC82 (ENSGFOG00000003213) #21	MAML2 (ENSGFOG00000003232) #22	MTMR2 (ENSGFOG00000003280) #23	CEP57 (ENSGFOG00000003350) #24	FAM76B (ENSGFOG00000003753) #25	SESN3 (ENSGFOG00000003762) #26	ENDOD1 (ENSGFOG00000003780) #27	CWC15 (ENSGFOG00000003791) #28	AMOTL1 (ENSGFOG00000003833) #29	ENSGFOG00000004274 #31	C11orf97 (ENSGFOG00000004289) #32	ANKRD49 (ENSGFOG00000004301) #34	MRE11 (ENSGFOG00000004308) #35	GPR83 (ENSGFOG00000004321) #36	PANX1 (ENSGFOG00000004334)	ENSGFOG00000004352	ENSGFOG00000004362
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b
Kakapo	MODERN SPECIES	11	ENSSHBG00005002636	MMP1 (ENSSHBG00005002695) #13	MMP27 (ENSSHBG00005002736) #11	MMP7 (ENSSHBG00005002758)	TMEM123 (ENSSHBG00005002791) #8	ENSSHBG00005002816 #7	YAP1 (ENSSHBG00005002837)	ENSSHBG00005002847	ENSSHBG00005002857	ANGPTL5 (ENSSHBG00005002883)	TRPC6 (ENSSHBG00005002929)	PGR (ENSSHBG00005002963)	ARHGAP42 (ENSSHBG00005003000)	CNTN5 (ENSSHBG00005003033)	CCDC82 (ENSSHBG00005003090) #21	MAML2 (ENSSHBG00005003105) #22	MTMR2 (ENSSHBG00005003123) #23	CEP57 (ENSSHBG00005003137) #24	FAM76B (ENSSHBG00005003148) #25	SESN3 (ENSSHBG00005003167) #26	ENDOD1 (ENSSHBG00005003178) #27	CWC15 (ENSSHBG00005003187) #28	ENSSHBG00005003237 #29	FUT4 (ENSSHBG00005003309) #31	C11orf97 (ENSSHBG00005003322) #32	ANKRD49 (ENSSHBG00005003336) #34	MRE11 (ENSSHBG00005003350) #35	GPR83 (ENSSHBG00005003385) #36	PANX1 (ENSSHBG00005003411)	HEPHL1 (ENSSHBG00005003506)	ENSSHBG00005003748
Golden eagle	MODERN SPECIES	10	ENSACCG00020008528 #15	MMP1 (ENSACCG00020008549) #13	MMP27 (ENSACCG00020008570) #11	ENSACCG00020008585	TMEM123 (ENSACCG00020008603) #8	ENSACCG00020008627 #7	YAP1 (ENSACCG00020008686)	CFAP300 (ENSACCG00020008702)	CEP126 (ENSACCG00020008718)	ANGPTL5 (ENSACCG00020008738)	TRPC6 (ENSACCG00020008765)	PGR (ENSACCG00020008798)	ARHGAP42 (ENSACCG00020008871)	CNTN5 (ENSACCG00020008929)	CCDC82 (ENSACCG00020008966) #21	MAML2 (ENSACCG00020008985) #22	MTMR2 (ENSACCG00020009006) #23	CEP57 (ENSACCG00020009041) #24	FAM76B (ENSACCG00020009069) #25	SESN3 (ENSACCG00020009081) #26	ENDOD1 (ENSACCG00020009097) #27	CWC15 (ENSACCG00020009107) #28	AMOTL1 (ENSACCG00020009124) #29	FUT4 (ENSACCG00020009150) #31	C11orf97 (ENSACCG00020009174) #32	ANKRD49 (ENSACCG00020009196) #34	MRE11 (ENSACCG00020009228) #35	GPR83 (ENSACCG00020009257) #36	PANX1 (ENSACCG00020009270)	HEPHL1 (ENSACCG00020009476)	ENSACCG00020009612
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d
Anatidae	ANCESTRAL SPECIES	16	ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d
Pink-footed goose	MODERN SPECIES	69															CCDC82 (ENSABRG00000000801) #21	MAML2 (ENSABRG00000000748) #22	MTMR2 (ENSABRG00000022819) #23	CEP57 (ENSABRG00000022815) #24	FAM76B (ENSABRG00000022812) #25	SESN3 (ENSABRG00000022806) #26	ENDOD1 (ENSABRG00000022805) #27	CWC15 (ENSABRG00000022800) #28	AMOTL1 (ENSABRG00000022773) #29	FUT4 (ENSABRG00000022765) #31	C11orf97 (ENSABRG00000022763) #32	ANKRD49 (ENSABRG00000022759) #34	MRE11 (ENSABRG00000022756) #35	GPR83 (ENSABRG00000022752) #36	PANX1 (ENSABRG00000022749)	ENSABRG00000022746	ENSABRG00000022745
Duck	MODERN SPECIES		ENSAPLG00000031031	ENSAPLG00000026339	GPC5 (ENSAPLG00000007039)	ENSAPLG00000017935	ENSAPLG00000011925	SLITRK5 (ENSAPLG00000006873)	ENSAPLG00000024179	SLITRK6 (ENSAPLG00000011486)	ENSAPLG00000027660	ENSAPLG00000003316	ARHGAP42 (ENSAPLG00000016036)	CNTN5 (ENSAPLG00000013194)	ENSAPLG00000026412	ENSAPLG00000023904	CCDC82 (ENSAPLG00000004583) #21	MAML2 (ENSAPLG00000004519) #22	MTMR2 (ENSAPLG00000004052) #23	CEP57 (ENSAPLG00000003812) #24	FAM76B (ENSAPLG00000003717) #25	SESN3 (ENSAPLG00000003440) #26	ENDOD1 (ENSAPLG00000025860) #27	CWC15 (ENSAPLG00000003221) #28	AMOTL1 (ENSAPLG00000002742) #29	FUT4 (ENSAPLG00000019961) #31	C11orf97 (ENSAPLG00000019178) #32	MRE11 (ENSAPLG00000021936) #35	PANX1 (ENSAPLG00000016177)	ENSAPLG00000027891	HEPHL1 (ENSAPLG00000015713)	ENSAPLG00000015524	ENSAPLG00000015429
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00950000182865.b.b.b.c.a.i.a.b.b	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00940000157994.b	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES		TMEM123 (ENSCJPG00005003755) #8	ENSCJPG00005003757 #7	ENSCJPG00005003758	YAP1 (ENSCJPG00005003761)	CFAP300 (ENSCJPG00005003768)	ENSCJPG00005003770	ANGPTL5 (ENSCJPG00005003777)	ENSCJPG00005003791	TRPC6 (ENSCJPG00005003793)	PGR (ENSCJPG00005003805)	ARHGAP42 (ENSCJPG00005003808)	CNTN5 (ENSCJPG00005003828)	ENSCJPG00005003843	CCDC82 (ENSCJPG00005003846) #21	ENSCJPG00005003847 #22	ENSCJPG00005003848 #22	MTMR2 (ENSCJPG00005003852) #23	CEP57 (ENSCJPG00005003853) #24	FAM76B (ENSCJPG00005003854) #25	SESN3 (ENSCJPG00005003931) #26	ENDOD1 (ENSCJPG00005003932) #27	CWC15 (ENSCJPG00005003933) #28	AMOTL1 (ENSCJPG00005003951) #29	FUT4 (ENSCJPG00005003953) #31	C11orf97 (ENSCJPG00005003956) #32	ANKRD49 (ENSCJPG00005003958) #34	MRE11 (ENSCJPG00005003960) #35	GPR83 (ENSCJPG00005003962) #36	PANX1 (ENSCJPG00005003965)	ENSCJPG00005003967	ENSCJPG00005003971
Japanese quail	MODERN SPECIES		ENSCJPG00005003728 #16	TMEM123 (ENSCJPG00005003755) #8	ENSCJPG00005003757 #7	ENSCJPG00005003758	YAP1 (ENSCJPG00005003761)	CFAP300 (ENSCJPG00005003768)	ENSCJPG00005003770	ANGPTL5 (ENSCJPG00005003777)	ENSCJPG00005003791	TRPC6 (ENSCJPG00005003793)	PGR (ENSCJPG00005003805)	ARHGAP42 (ENSCJPG00005003808)	CNTN5 (ENSCJPG00005003828)	ENSCJPG00005003843	CCDC82 (ENSCJPG00005003846) #21	ENSCJPG00005003847 #22	ENSCJPG00005003848 #22	MTMR2 (ENSCJPG00005003852) #23	CEP57 (ENSCJPG00005003853) #24	FAM76B (ENSCJPG00005003854) #25	SESN3 (ENSCJPG00005003931) #26	ENDOD1 (ENSCJPG00005003932) #27	CWC15 (ENSCJPG00005003933) #28	AMOTL1 (ENSCJPG00005003951) #29	FUT4 (ENSCJPG00005003953) #31	C11orf97 (ENSCJPG00005003956) #32	ANKRD49 (ENSCJPG00005003958) #34	MRE11 (ENSCJPG00005003960) #35	GPR83 (ENSCJPG00005003962) #36	PANX1 (ENSCJPG00005003965)	ENSCJPG00005003967
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT00950000182865.b.b.b.c.a.i.a.b.b	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000153972.A	ENSGT00940000157994.b	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d
Chicken	MODERN SPECIES		ENSGALG00010007959	ENSGALG00010007961	ENSGALG00010007967	ENSGALG00010007971	ENSGALG00010007974	ENSGALG00010007421	ENSGALG00010007362	ENSGALG00010007411	ENSGALG00010007295	ENSGALG00010007309	TRPC6 (ENSGALG00010007455)	PGR (ENSGALG00010008178)	ARHGAP42 (ENSGALG00010008218)	CNTN5 (ENSGALG00010008242)	CCDC82 (ENSGALG00010008258) #21	MAML2 (ENSGALG00010008267) #22	MTMR2 (ENSGALG00010008289) #23	ENSGALG00010008302	CEP57 (ENSGALG00010008317) #24	FAM76B (ENSGALG00010008339) #25	SESN3 (ENSGALG00010008386) #26	ENDOD1 (ENSGALG00010008395) #27	CWC15 (ENSGALG00010008409) #28	AMOTL1 (ENSGALG00010008453) #29	FUT4 (ENSGALG00010009149) #31	C11orf97 (ENSGALG00010008466) #32	ANKRD49 (ENSGALG00010008492) #34	MRE11 (ENSGALG00010008516) #35	GPR83 (ENSGALG00010008529) #36	PANX1 (ENSGALG00010008580)	ENSGALG00010009160
Turkey	MODERN SPECIES		ENSMGAG00000021668	ENSMGAG00000015131	ENSMGAG00000015130	ENSMGAG00000015129	ENSMGAG00000015612	ENSMGAG00000015128	ENSMGAG00000021286	ENSMGAG00000015126	ENSMGAG00000022671	ENSMGAG00000015123	ENSMGAG00000015124	ZDHHC20 (ENSMGAG00000015122)	MRPL57 (ENSMGAG00000015610)	FGF9 (ENSMGAG00000021422)	CCDC82 (ENSMGAG00000015184) #21	MAML2 (ENSMGAG00000015186) #22	MTMR2 (ENSMGAG00000015187) #23	CEP57 (ENSMGAG00000015188) #24	FAM76B (ENSMGAG00000015189) #25	SESN3 (ENSMGAG00000015191) #26	ENDOD1 (ENSMGAG00000020832) #27	CWC15 (ENSMGAG00000015193) #28	SMCO4 (ENSMGAG00000021417)	ENSMGAG00000015214	C11orf54 (ENSMGAG00000015205)	ENSMGAG00000015206	ENSMGAG00000015202	ENSMGAG00000015203	ENSMGAG00000015204	ENSMGAG00000015200	ENSMGAG00000015201
African ostrich	MODERN SPECIES	256															CCDC82 (ENSSCUG00000004205) #21	MAML2 (ENSSCUG00000004207) #22	MTMR2 (ENSSCUG00000004208) #23	CEP57 (ENSSCUG00000004215) #24	FAM76B (ENSSCUG00000004219) #25	SESN3 (ENSSCUG00000004225) #26	ENDOD1 (ENSSCUG00000004227) #27	CWC15 (ENSSCUG00000004228) #28	ENSSCUG00000004229 #29	ENSSCUG00000004231 #29	FUT4 (ENSSCUG00000004234) #31	ENSSCUG00000004236	ANKRD49 (ENSSCUG00000004239) #34	MRE11 (ENSSCUG00000004242) #35
Australian saltwater crocodile	MODERN SPECIES	27	MMP20 (ENSCPRG00005014825) #10	ENSCPRG00005014827 #9	ENSCPRG00005014829	MMP7 (ENSCPRG00005014833)	TMEM123 (ENSCPRG00005014837) #8	ENSCPRG00005014841 #7	YAP1 (ENSCPRG00005014865)	CFAP300 (ENSCPRG00005014867)	CEP126 (ENSCPRG00005014875)	ANGPTL5 (ENSCPRG00005014880)	TRPC6 (ENSCPRG00005014918)	PGR (ENSCPRG00005014963)	ARHGAP42 (ENSCPRG00005014996)	CNTN5 (ENSCPRG00005015041)	CCDC82 (ENSCPRG00005015051) #21	MAML2 (ENSCPRG00005015057) #22	MTMR2 (ENSCPRG00005015062) #23	CEP57 (ENSCPRG00005015066) #24	FAM76B (ENSCPRG00005015082) #25	SESN3 (ENSCPRG00005015169) #26	ENDOD1 (ENSCPRG00005015178) #27	CWC15 (ENSCPRG00005015180) #28	AMOTL1 (ENSCPRG00005015195) #29	PIWIL4 (ENSCPRG00005015220) #30	FUT4 (ENSCPRG00005015235) #31	ENSCPRG00005015245	MRE11 (ENSCPRG00005015256) #35	GPR83 (ENSCPRG00005015271) #36	ENSCPRG00005015273	ENSCPRG00005015275	ENSCPRG00005015292
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000166491 #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Chinese turtle	MODERN SPECIES	1501										ENSPSIG00000001413	CNTN5 (ENSPSIG00000011284)	ENSPSIG00000001428	ENSPSIG00000001435	ENSPSIG00000001441	CCDC82 (ENSPSIG00000006535) #21	MAML2 (ENSPSIG00000006959) #22	MTMR2 (ENSPSIG00000007389) #23	CEP57 (ENSPSIG00000011086) #24	FAM76B (ENSPSIG00000011942) #25
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000166491.a.a #15	ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000154907.b.h.b #13	ENSGT00940000154907.b.h.a #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000157994
Three-toed box turtle	MODERN SPECIES	41				MMP27 (ENSTMTG00000007165) #11	ENSTMTG00000007074 ##13	ENSTMTG00000007041 #7	YAP1 (ENSTMTG00000007019)	CFAP300 (ENSTMTG00000006981)	CEP126 (ENSTMTG00000006950)	ANGPTL5 (ENSTMTG00000006917)	TRPC6 (ENSTMTG00000006827)	PGR (ENSTMTG00000021226)	ARHGAP42 (ENSTMTG00000021206)	CNTN5 (ENSTMTG00000020897)	CCDC82 (ENSTMTG00000020843) #21	MAML2 (ENSTMTG00000020833) #22	MTMR2 (ENSTMTG00000020816) #23	CEP57 (ENSTMTG00000020801) #24	FAM76B (ENSTMTG00000020789) #25	SESN3 (ENSTMTG00000020784) #26	ENDOD1 (ENSTMTG00000020781) #27	CWC15 (ENSTMTG00000020776) #28	AMOTL1 (ENSTMTG00000020714) #29	PIWIL4 (ENSTMTG00000020697) #30	FUT4 (ENSTMTG00000020687) #31	C11orf97 (ENSTMTG00000020677) #32	ANKRD49 (ENSTMTG00000020673) #34	ENSTMTG00000020664 #35	ENSTMTG00000020654 #35	GPR83 (ENSTMTG00000020649) #36	ENSTMTG00000020644
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	897																ENSCPBG00000024057 #22	MTMR2 (ENSCPBG00000024054) #23	CEP57 (ENSCPBG00000024051) #24	FAM76B (ENSCPBG00000024048) #25	SESN3 (ENSCPBG00000024045) #26	ENDOD1 (ENSCPBG00000024041) #27	CWC15 (ENSCPBG00000024037) #28	AMOTL1 (ENSCPBG00000024034) #29	PIWIL4 (ENSCPBG00000024031) #30	ENSCPBG00000024029	FUT4 (ENSCPBG00000024027) #31	C11orf97 (ENSCPBG00000024025) #32	ANKRD49 (ENSCPBG00000024024) #34	MRE11 (ENSCPBG00000024022) #35	GPR83 (ENSCPBG00000024017) #36	PANX1 (ENSCPBG00000024014)
painted turtle	MODERN SPECIES	2367	ENSCPBG00000027446 #15	ENSCPBG00000027444 #13	ENSCPBG00000027443 #13	MMP27 (ENSCPBG00000027441) #11	ENSCPBG00000027439 ##13	TMEM123 (ENSCPBG00000027438) #8	ENSCPBG00000027435 #7	YAP1 (ENSCPBG00000027430)	CEP126 (ENSCPBG00000027420)	ANGPTL5 (ENSCPBG00000027415)	TRPC6 (ENSCPBG00000027413)	ENSCPBG00000027411	ARHGAP42 (ENSCPBG00000027408)	CNTN5 (ENSCPBG00000027396)	CCDC82 (ENSCPBG00000027381) #21	ENSCPBG00000027378 #22
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000154907.b #13	ENSGT00940000161159 #11	ENSGT00940000154907.a.a ##13	ENSGT00940000160903	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00950000183201.a #22	ENSGT01010000223591	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.A #26	ENSGT01030000234592.B.`b #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00520000058823 #32	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A
Abingdon island giant tortoise	MODERN SPECIES	2391																MAML2 (ENSCABG00000022488) #22	ENSCABG00000022489	MTMR2 (ENSCABG00000022491) #23	CEP57 (ENSCABG00000022493) #24	ENSCABG00000022494	FAM76B (ENSCABG00000022496) #25	SESN3 (ENSCABG00000022517) #26	ENDOD1 (ENSCABG00000022523) #27	CWC15 (ENSCABG00000022524) #28	ENSCABG00000022525 #29	PIWIL4 (ENSCABG00000022526) #30	ENSCABG00000022529	FUT4 (ENSCABG00000022530) #31	C11orf97 (ENSCABG00000022532) #32
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005008403 #15	MMP1 (ENSGEVG00005008386) #13	MMP27 (ENSGEVG00005008369) #11	MMP7 (ENSGEVG00005008346)	ENSGEVG00005008335 #7	YAP1 (ENSGEVG00005008309)	CFAP300 (ENSGEVG00005008286)	CEP126 (ENSGEVG00005008250)	ANGPTL5 (ENSGEVG00005008220)	TRPC6 (ENSGEVG00005008171)	PGR (ENSGEVG00005008127)	ARHGAP42 (ENSGEVG00005008027)	CNTN5 (ENSGEVG00005007749)	CCDC82 (ENSGEVG00005007622) #21	ENSGEVG00005007596 #22	ENSGEVG00005007582 #22	ENSGEVG00005007569	MTMR2 (ENSGEVG00005007507) #23	CEP57 (ENSGEVG00005007470) #24	FAM76B (ENSGEVG00005007437) #25	SESN3 (ENSGEVG00005007415) #26	ENDOD1 (ENSGEVG00005007403) #27	CWC15 (ENSGEVG00005007384) #28	AMOTL1 (ENSGEVG00005007334) #29	PIWIL4 (ENSGEVG00005006224) #30	FUT4 (ENSGEVG00005006031) #31	C11orf97 (ENSGEVG00005006010) #32	ANKRD49 (ENSGEVG00005005970) #34	MRE11 (ENSGEVG00005005932) #35	GPR83 (ENSGEVG00005005900) #36	ENSGEVG00005005884
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005008434	ENSGEVG00005008403 #15	MMP1 (ENSGEVG00005008386) #13	MMP27 (ENSGEVG00005008369) #11	MMP7 (ENSGEVG00005008346)	ENSGEVG00005008335 #7	YAP1 (ENSGEVG00005008309)	CFAP300 (ENSGEVG00005008286)	CEP126 (ENSGEVG00005008250)	ANGPTL5 (ENSGEVG00005008220)	TRPC6 (ENSGEVG00005008171)	PGR (ENSGEVG00005008127)	ARHGAP42 (ENSGEVG00005008027)	CNTN5 (ENSGEVG00005007749)	CCDC82 (ENSGEVG00005007622) #21	ENSGEVG00005007596 #22	ENSGEVG00005007582 #22	ENSGEVG00005007569	MTMR2 (ENSGEVG00005007507) #23	CEP57 (ENSGEVG00005007470) #24	FAM76B (ENSGEVG00005007437) #25	SESN3 (ENSGEVG00005007415) #26	ENDOD1 (ENSGEVG00005007403) #27	CWC15 (ENSGEVG00005007384) #28	AMOTL1 (ENSGEVG00005007334) #29	PIWIL4 (ENSGEVG00005006224) #30	FUT4 (ENSGEVG00005006031) #31	C11orf97 (ENSGEVG00005006010) #32	ANKRD49 (ENSGEVG00005005970) #34	MRE11 (ENSGEVG00005005932) #35	GPR83 (ENSGEVG00005005900) #36
Anura	ANCESTRAL SPECIES	28	ENSGT00940000161277 #10	ENSGT00940000160903.b	ENSGT00940000160903.a	ENSGT00530000063929.b #8	ENSGT00940000154175 #7	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986 #21	ENSGT00940000175059	ENSGT00950000183201.a #22	ENSGT00940000153669.a #23	ENSGT00530000063695.a #24	ENSGT00940000159074 #25	ENSGT00950000183168.D ##26	ENSGT01030000234592.B #27	ENSGT00390000012084 #28	ENSGT00940000160158 #29	ENSGT00950000183200.A.a.a #30	ENSGT00940000162506 #31	ENSGT00390000003919 #34	ENSGT00390000017288 #35	ENSGT00940000154336 #36	ENSGT00940000153972.A	ENSGT00940000158517	ENSGT00940000166029.a
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000002506 ##30	ANGPTL5 (ENSLLEG00000002451)	ENSLLEG00000002445	TRPC6 (ENSLLEG00000002306)	PGR (ENSLLEG00000002160)	ARHGAP42 (ENSLLEG00000001987)	ENSLLEG00000001943	CNTN5 (ENSLLEG00000001802)	ENSLLEG00000001741	ENSLLEG00000001726	ENSLLEG00000001711	ENSLLEG00000001704	ENSLLEG00000001695	ENSLLEG00000001686	ENSLLEG00000001648	MAML2 (ENSLLEG00000001625) #22	MTMR2 (ENSLLEG00000001551) #23	CEP57 (ENSLLEG00000001493) #24	FAM76B (ENSLLEG00000001380) #25	ENSLLEG00000001302 ##26	ENSLLEG00000001264 #27	CWC15 (ENSLLEG00000001240) #28	AMOTL1 (ENSLLEG00000001089) #29	PIWIL4 (ENSLLEG00000000999) #30	FUT4 (ENSLLEG00000000971) #31	ENSLLEG00000000917	ANKRD49 (ENSLLEG00000000894) #34	MRE11 (ENSLLEG00000000758) #35	ENSLLEG00000000746	GPR83 (ENSLLEG00000000726) #36	ENSLLEG00000000696
Frog	MODERN SPECIES	2	mmp3 (ENSXETG00000022185)	tmem123 (ENSXETG00000040034) #8	ENSXETG00000049238	birc2 (ENSXETG00000022183) #7	yap1 (ENSXETG00000032689)	cfap300 (ENSXETG00000022178)	cep126 (ENSXETG00000032504)	angptl5 (ENSXETG00000005480)	trpc6 (ENSXETG00000005481)	pgr (ENSXETG00000005482)	ENSXETG00000042365	arhgap42 (ENSXETG00000005487)	ENSXETG00000034983	cntn5 (ENSXETG00000005492)	ccdc82 (ENSXETG00000007073) #21	maml2 (ENSXETG00000007075) #22	ENSXETG00000034471	cwc15 (ENSXETG00000007076) #28	endod1 (ENSXETG00000036422) #27	sesn3 (ENSXETG00000007079) ##26	fam76b (ENSXETG00000007080) #25	cep57 (ENSXETG00000007081) #24	mtmr2 (ENSXETG00000007082) #23	amotl1 (ENSXETG00000006385) #29	ENSXETG00000043087	ENSXETG00000047652	piwil4 (ENSXETG00000006411) #30	fut4 (ENSXETG00000025292) #31	ankrd49 (ENSXETG00000006415) #34	ankrd49 (ENSXETG00000037124)	mre11 (ENSXETG00000006417) #35