Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000000883	ENSGT00940000153956.a	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000154372.b #12	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23	ENSGT00510000047961 #24	ENSGT01070000253744.a.a.a.a #25	ENSGT00510000047107.A #26	ENSGT00940000157825 #27	ENSGT00390000017833 #28	ENSGT00940000159793 #29	ENSGT00940000153249.a #30	ENSGT00940000157356 #31	ENSGT00390000008540 #32	ENSGT00940000156410	ENSGT00740000115593	ENSGT00940000162913.a.a	ENSGT00940000162913.a.b	ENSGT00940000154299.e
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00390000000883	ENSGT00940000153956.a	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000154372.b #12	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23	ENSGT00510000047961 #24	ENSGT01070000253744.a.a.a.a #25	ENSGT00510000047107.A #26	ENSGT00940000157825 #27	ENSGT00390000017833 #28	ENSGT00940000159793 #29	ENSGT00940000153249.a #30	ENSGT00940000157356 #31	ENSGT00390000008540 #32	ENSGT00940000156410	ENSGT00740000115593	ENSGT00940000162913.a.a	ENSGT00940000162913.a.b	ENSGT00940000154299.e
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000000883	ENSGT00940000153956.a	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000154372.b #12	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23	ENSGT00510000047961 #24	ENSGT01070000253744.a.a.a.a #25	ENSGT00510000047107.A #26	ENSGT00940000157825 #27	ENSGT00390000017833 #28	ENSGT00940000159793 #29	ENSGT00940000153249.a #30	ENSGT00940000157356 #31	ENSGT00390000008540 #32	ENSGT00940000156410	ENSGT00740000115593	ENSGT00940000162913.a.a	ENSGT00940000162913.a.b	ENSGT00940000154299.e.c
Marmotini_b	ANCESTRAL SPECIES	136	ENSGT00940000160856	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000154372.b #12	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00940000164435 #18	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23	ENSGT00510000047961 #24	ENSGT01070000253744.a.a.a.a #25	ENSGT00510000047107.A #26	ENSGT00940000157825 #27	ENSGT00390000017833 #28	ENSGT00940000159793 #29	ENSGT00940000153249.a #30	ENSGT00940000157356 #31	ENSGT00390000008540 #32	ENSGT00940000156410	ENSGT00740000115593	ENSGT00940000162913.a.a	ENSGT00940000162913.a.b	ENSGT00940000154299.e.c
Arctic ground squirrel	MODERN SPECIES	184	ENSUPAG00010011348 #7	PCGF5 (ENSUPAG00010011353) #8	HECTD2 (ENSUPAG00010011490) #9	PPP1R3C (ENSUPAG00010011587) #10	TNKS2 (ENSUPAG00010011590) #11	FGFBP3 (ENSUPAG00010011663) #12	BTAF1 (ENSUPAG00010011669) #13	CPEB3 (ENSUPAG00010011729) #14	MARCHF5 (ENSUPAG00010011762) #15	IDE (ENSUPAG00010011780) #16	KIF11 (ENSUPAG00010011823) #17	ENSUPAG00010011848 #18	EXOC6 (ENSUPAG00010011855) #19	ENSUPAG00010011980 #20	CYP26C1 (ENSUPAG00010011987) #21	CYP26A1 (ENSUPAG00010012007) #22	MYOF (ENSUPAG00010012066) #23	CEP55 (ENSUPAG00010015636) #24	FFAR4 (ENSUPAG00010015683) #25	RBP4 (ENSUPAG00010015686) #26	PDE6C (ENSUPAG00010015697) #27	FRA10AC1 (ENSUPAG00010015789) #28	LGI1 (ENSUPAG00010015822) #29	SLC35G1 (ENSUPAG00010015900) #30	PLCE1 (ENSUPAG00010015907) #31	NOC3L (ENSUPAG00010015941) #32	ENSUPAG00010015965 #33	NEFL (ENSUPAG00010015984) #34
Squirrel	MODERN SPECIES	201	PCGF5 (ENSSTOG00000009179) #8	HECTD2 (ENSSTOG00000009022) #9	PPP1R3C (ENSSTOG00000025781) #10	TNKS2 (ENSSTOG00000002349) #11	BTAF1 (ENSSTOG00000008677) #13	CPEB3 (ENSSTOG00000028061) #14	MARCHF5 (ENSSTOG00000005998) #15	ENSSTOG00000025613	IDE (ENSSTOG00000020385) #16	ENSSTOG00000024075	KIF11 (ENSSTOG00000006209) #17	HHEX (ENSSTOG00000006255)	ENSSTOG00000030502 #20	EXOC6 (ENSSTOG00000015601) #19	CYP26C1 (ENSSTOG00000015614) #21	CYP26A1 (ENSSTOG00000015617) #22	MYOF (ENSSTOG00000034018) #23	CEP55 (ENSSTOG00000016092) #24	FFAR4 (ENSSTOG00000016093) #25	RBP4 (ENSSTOG00000016094) #26	PDE6C (ENSSTOG00000024806) #27	FRA10AC1 (ENSSTOG00000016097) #28	LGI1 (ENSSTOG00000016098) #29	SLC35G1 (ENSSTOG00000014149) #30	PLCE1 (ENSSTOG00000014154) #31	NOC3L (ENSSTOG00000027599) #32	TBC1D12 (ENSSTOG00000019398)	HELLS (ENSSTOG00000021976)	ENSSTOG00000022653	ENSSTOG00000019513	ENSSTOG00000026122
Alpin marmot	MODERN SPECIES	66	ANKRD1 (ENSMMMG00000012324)	ENSMMMG00000012338 #7	PCGF5 (ENSMMMG00000012341) #8	HECTD2 (ENSMMMG00000012452) #9	PPP1R3C (ENSMMMG00000012486) #10	TNKS2 (ENSMMMG00000012490) #11	BTAF1 (ENSMMMG00000012536) #13	CPEB3 (ENSMMMG00000012583) #14	MARCHF5 (ENSMMMG00000012751) #15	ENSMMMG00000012791	IDE (ENSMMMG00000012810) #16	KIF11 (ENSMMMG00000014562) #17	HHEX (ENSMMMG00000014588)	EXOC6 (ENSMMMG00000014609) #19	CYP26C1 (ENSMMMG00000014630) #21	CYP26A1 (ENSMMMG00000014654) #22	MYOF (ENSMMMG00000014697) #23	CEP55 (ENSMMMG00000016392) #24	FFAR4 (ENSMMMG00000016402) #25	RBP4 (ENSMMMG00000016408) #26	PDE6C (ENSMMMG00000016417) #27	FRA10AC1 (ENSMMMG00000016466) #28	LGI1 (ENSMMMG00000016475) #29	SLC35G1 (ENSMMMG00000016542) #30	PLCE1 (ENSMMMG00000016548) #31	NOC3L (ENSMMMG00000016670) #32
Eurasian red squirrel	MODERN SPECIES	13	ANKRD1 (ENSSVLG00005002411)	ENSSVLG00005002380 #7	PCGF5 (ENSSVLG00005002364) #8	HECTD2 (ENSSVLG00005002277) #9	PPP1R3C (ENSSVLG00005002239) #10	ENSSVLG00005002229	TNKS2 (ENSSVLG00005002210) #11	FGFBP3 (ENSSVLG00005002179) #12	CPEB3 (ENSSVLG00005001674) #14	MARCHF5 (ENSSVLG00005001638) #15	IDE (ENSSVLG00005001509) #16	KIF11 (ENSSVLG00005001396) #17	ENSSVLG00005001363	EXOC6 (ENSSVLG00005001255) #19	CYP26C1 (ENSSVLG00005001162) #21	CYP26A1 (ENSSVLG00005001125) #22	MYOF (ENSSVLG00005001073) #23	CEP55 (ENSSVLG00005000977) #24	RBP4 (ENSSVLG00005000954) #26	FFAR4 (ENSSVLG00005000917) #25	ENSSVLG00005000896	PDE6C (ENSSVLG00005000854) #27	FRA10AC1 (ENSSVLG00005000812) #28	LGI1 (ENSSVLG00005000690) #29	SLC35G1 (ENSSVLG00005000602) #30	PLCE1 (ENSSVLG00005000526) #31	NOC3L (ENSSVLG00005000479) #32	ENSSVLG00005000452	TBC1D12 (ENSSVLG00005000401)	HELLS (ENSSVLG00005025855)	ENSSVLG00005025831
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000000883	ENSGT00940000153956.a	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000154372.b #12	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23	ENSGT00510000047961 #24	ENSGT01070000253744.a.a.a.a #25	ENSGT00510000047107.A #26	ENSGT00940000157825 #27	ENSGT00390000017833 #28	ENSGT00940000159793 #29	ENSGT00940000153249.a #30	ENSGT00940000157356 #31	ENSGT00390000008540 #32	ENSGT00940000156410	ENSGT00740000115593	ENSGT00940000162913.a.a	ENSGT00940000162913.a.b	ENSGT00940000154299.e.b
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT01010000222287.B.a.a.a.a	ENSGT00390000000883	ENSGT00940000153956.a	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23	ENSGT00510000047961 #24	ENSGT01070000253744.a.a.a.a #25	ENSGT00510000047107.A #26	ENSGT00940000157825 #27	ENSGT00390000017833 #28	ENSGT00940000159793 #29	ENSGT00940000153249.a #30	ENSGT00940000157356 #31	ENSGT00390000008540 #32	ENSGT00940000156410	ENSGT00740000115593	ENSGT00940000162913.a.a	ENSGT00940000162913.a.b	ENSGT00940000154299.e.b
Hystricomorpha_b	ANCESTRAL SPECIES	72	ENSGT01010000222287.B.a.a.a.a	ENSGT00390000000883	ENSGT00940000153956.a	ENSGT00940000155896 #8	ENSGT00940000157750 #9	ENSGT00940000155648.B #10	ENSGT00940000159911 #11	ENSGT00940000157500 #13	ENSGT00940000158949 #14	ENSGT00390000009948.c #15	ENSGT00940000155780 #16	ENSGT00940000155921 #17	ENSGT00940000161748	ENSGT00390000005739.a.b #19	ENSGT00800000124060.A.b #21	ENSGT00800000124060.B #22	ENSGT00940000154741 #23
Long-tailed chinchilla	MODERN SPECIES	132	RPP30 (ENSCLAG00000008595)	ANKRD1 (ENSCLAG00000009887)	PCGF5 (ENSCLAG00000013777) #8	ENSCLAG00000012695 #9	PPP1R3C (ENSCLAG00000012433) #10	ENSCLAG00000010844	TNKS2 (ENSCLAG00000013558) #11	BTAF1 (ENSCLAG00000012888) #13	CPEB3 (ENSCLAG00000011817) #14	MARCHF5 (ENSCLAG00000013192) #15	IDE (ENSCLAG00000013467) #16	KIF11 (ENSCLAG00000013622) #17	HHEX (ENSCLAG00000012119)	EXOC6 (ENSCLAG00000008310) #19	CYP26C1 (ENSCLAG00000010270) #21	CYP26A1 (ENSCLAG00000010048) #22	MYOF (ENSCLAG00000007931) #23
Degu	MODERN SPECIES	87	ENSODEG00000004464	MARCHF5 (ENSODEG00000004219) #15	ENSODEG00000005936	IDE (ENSODEG00000005398) #16	KIF11 (ENSODEG00000006812) #17	HHEX (ENSODEG00000006657)	ENSODEG00000005404	ENSODEG00000019192	ENSODEG00000005119	ENSODEG00000019122	ENSODEG00000005000	ENSODEG00000005878	ENSODEG00000005365	EXOC6 (ENSODEG00000005032) #19	CYP26C1 (ENSODEG00000006273) #21	CYP26A1 (ENSODEG00000006141) #22	ENSODEG00000006071	MYOF (ENSODEG00000004826) #23	ENSODEG00000004069	ENSODEG00000005256	ENSODEG00000005072	ENSODEG00000004737	ENSODEG00000004562	DNA2 (ENSODEG00000004357)	ENSODEG00000004211	HNRNPH3 (ENSODEG00000004517)	PBLD (ENSODEG00000004402)	ATOH7 (ENSODEG00000004225)	MYPN (ENSODEG00000008662)	HERC4 (ENSODEG00000008527)	SIRT1 (ENSODEG00000005951)
Guinea pig	MODERN SPECIES	135						TNKS2 (ENSCPOG00000002254) #11	BTAF1 (ENSCPOG00000003886) #13	CPEB3 (ENSCPOG00000037660) #14	MARCHF5 (ENSCPOG00000019626) #15	IDE (ENSCPOG00000000805) #16	KIF11 (ENSCPOG00000021736) #17	ENSCPOG00000031265	EXOC6 (ENSCPOG00000003806) #19	ENSCPOG00000030450	CYP26C1 (ENSCPOG00000003810) #21	CYP26A1 (ENSCPOG00000021751) #22	MYOF (ENSCPOG00000009867) #23	CEP55 (ENSCPOG00000007305) #24	FFAR4 (ENSCPOG00000002132) #25	RBP4 (ENSCPOG00000002134) #26	PDE6C (ENSCPOG00000004287) #27	FRA10AC1 (ENSCPOG00000004292) #28	LGI1 (ENSCPOG00000008822) #29	SLC35G1 (ENSCPOG00000012167) #30	PLCE1 (ENSCPOG00000009723) #31	NOC3L (ENSCPOG00000009746) #32	ENSCPOG00000037761	TBC1D12 (ENSCPOG00000007903)	HELLS (ENSCPOG00000003043)
Naked mole-rat female	MODERN SPECIES	4	HECTD2 (ENSHGLG00000013810) #9	ENSHGLG00000033981	PPP1R3C (ENSHGLG00000045942) #10	TNKS2 (ENSHGLG00000018423) #11	FGFBP3 (ENSHGLG00000046261) #12	BTAF1 (ENSHGLG00000010425) #13	CPEB3 (ENSHGLG00000014022) #14	MARCH5 (ENSHGLG00000044946) #15	IDE (ENSHGLG00000012665) #16	KIF11 (ENSHGLG00000014395) #17	HHEX (ENSHGLG00000033111)	EXOC6 (ENSHGLG00000012531) #19	ENSHGLG00000042956	ENSHGLG00000039738	CYP26C1 (ENSHGLG00000015899) #21	CYP26A1 (ENSHGLG00000015940) #22	ENSHGLG00000045003	MYOF (ENSHGLG00000016065) #23	CEP55 (ENSHGLG00000006591) #24	FFAR4 (ENSHGLG00000007702) #25	RBP4 (ENSHGLG00000008358) #26	PDE6C (ENSHGLG00000011305) #27	FRA10AC1 (ENSHGLG00000016660) #28	ENSHGLG00000036961	LGI1 (ENSHGLG00000034142) #29	ENSHGLG00000032608	SLC35G1 (ENSHGLG00000014527) #30	PLCE1 (ENSHGLG00000013624) #31	ENSHGLG00000014910	ENSHGLG00000047960	NOC3L (ENSHGLG00000013197) #32