Euteleosteomorpha	ANCESTRAL SPECIES	129	ENSGT00940000157872 #9	ENSGT00940000157849.n.c #11	ENSGT00940000162479.a ##10	ENSGT00940000155360.B.k #12	ENSGT00940000163243 #13	ENSGT00390000008846 #14	ENSGT00940000159205 #15	ENSGT00940000163031.b.a.a #16	ENSGT00390000018553 #17	ENSGT00940000164275.f	ENSGT00940000157360.c #18	ENSGT00940000156807.f	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00390000013956 #23	ENSGT00940000156877 #24	ENSGT00940000175375	ENSGT00940000159144.A	ENSGT00390000003758	ENSGT00940000153534.A	ENSGT00930000150950.b	ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b
Protacanthopterygii	ANCESTRAL SPECIES	46	ENSGT00390000004360.a.b.a.a.b #7	ENSGT00940000157874.q.a #8	ENSGT00940000157872 #9	ENSGT00940000157849.n.c #11	ENSGT00940000155360.B.k #12	ENSGT00940000163243 #13	ENSGT00390000008846 #14	ENSGT00940000159205 #15	ENSGT00940000163031.b.a.a #16	ENSGT00390000018553 #17	ENSGT00940000164275.f	ENSGT00940000157360.c #18	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00390000013956 #23	ENSGT00940000156877 #24	ENSGT00970000196952	ENSGT00390000005130 #26	ENSGT00940000160040.B.a.a #27	ENSGT01050000244924.a.a.b.a.b #28	ENSGT00940000160580.b #29	ENSGT00940000160280.d #30	ENSGT00940000161021.a.b #31	ENSGT00890000139496.a #32	ENSGT00940000155893.b #33	ENSGT00940000155708 #34	ENSGT00950000183196.B.e.f #35	ENSGT01080000257342.H.b
Northern pike	MODERN SPECIES	21	cab39l (ENSELUG00000005160) #7	MCF2L (ENSELUG00000005447) #8	tubgcp3 (ENSELUG00000005567) #9	sox1b (ENSELUG00000005792) #10	ATP11A (ENSELUG00000005738) #11	arhgef7b (ENSELUG00000005907) #12	ENSELUG00000001132 #13	lipt1 (ENSELUG00000005979) #14	tsga10 (ENSELUG00000006038) #15	ENSELUG00000006099 #16	unc50 (ENSELUG00000033269) #17	inpp4ab (ENSELUG00000006294) #18	ENSELUG00000006350 #19	pou3f3b (ENSELUG00000006369) #20	mrps9 (ENSELUG00000006431) #21	SLAIN1 (ENSELUG00000006486) #22	ENSELUG00000006526 #23	ENSELUG00000006544 #24	ENSELUG00000006561 #25	ENSELUG00000006570 #26	efna2a (ENSELUG00000006580) #27	ptbp1a (ENSELUG00000006668) #28	palm1b (ENSELUG00000006693) #29	plppr3a (ENSELUG00000006711) #30	GRIN3B (ENSELUG00000006801) #31	cldn11a (ENSELUG00000001325) #32	slc7a14a (ENSELUG00000006859) #33	slc2a2 (ENSELUG00000006900) #34	tnika (ENSELUG00000006980) #35	gyg1a (ENSELUG00000007021) #36	pak2a (ENSELUG00000007078) #37
Salmoninae	ANCESTRAL SPECIES	226	ENSGT00940000155360.B.k.c #12	ENSGT00940000163243.f #13	ENSGT00390000008846.a #14	ENSGT00940000159205.fb #15	ENSGT00940000163031.b.a.a #16	ENSGT00390000018553.e.a #17	ENSGT00940000164275.f.e	ENSGT00940000157360.c.i #18	ENSGT00390000017581.b.b.c #19	ENSGT00390000018553.e.b #17	ENSGT00940000164275.f.f	ENSGT00940000157360.c.j.b.a #18	ENSGT00390000017581.b.b.d #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204.f.a #21	ENSGT00390000017860.a.b.f #22	ENSGT00390000013956 #23	ENSGT00940000156877.g #24	ENSGT01070000253816.a.a.b.p #25	ENSGT00390000005130 #26	ENSGT00940000160040.B.a.a.f #27	ENSGT01050000244924.a.a.b.a.b.e.b #28	ENSGT00940000160580.b #29	ENSGT00940000160280.d.c.b #30	ENSGT00940000160040.B.a.a.e #27	ENSGT01050000244924.a.a.b.a.b.f #28	ENSGT00940000160280.d.d #30	ENSGT00940000161021.a.b #31	ENSGT00890000139496.a #32	ENSGT00940000155893.b #33	ENSGT00940000155708.f.b #34
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	114	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d	ENSGT00390000004360.a.b.a.a.b.a.b #7	ENSGT00940000157874.q.a.c.a #8	ENSGT00940000157872.i #9	ENSGT00940000157849.n.c #11	ENSGT00940000155360.B.k.d #12	ENSGT00940000163243.e #13	ENSGT00990000211402	ENSGT00940000162479.b.i.b #10	ENSGT00940000155360.B.k.c #12	ENSGT00940000163243.f #13	ENSGT00390000008846.a #14	ENSGT00940000159205.gb.a #15	ENSGT00390000011204.e #21	ENSGT00390000017860.a.b.f.e #22	ENSGT00940000156877.g.b #24	ENSGT00940000159205.fb #15	ENSGT00940000163031.b.a.a #16	ENSGT00390000018553.e.a #17	ENSGT00940000164275.f.e	ENSGT00940000157360.c.i.b #18	ENSGT00940000157360.c.j.b.a #18	ENSGT00390000017581.b.b.d #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204.f.a #21	ENSGT00390000017860.a.b.f.f #22	ENSGT00390000013956 #23	ENSGT00940000156877.g.a #24	ENSGT01070000253816.a.a.b.p #25	ENSGT00390000005130 #26
Salmo	ANCESTRAL SPECIES	72	ENSGT00940000157872.i #9	ENSGT00940000157849.n.c.c #11	ENSGT00990000211402	ENSGT00940000162479.b.i.b.c.a #10	ENSGT00940000155360.B.k.c.a #12	ENSGT00940000163243.f #13	ENSGT00390000008846.a #14	ENSGT00940000159205.gb.a #15	ENSGT00940000163031.b.a.a.d #16	ENSGT00390000018553.e.b #17	ENSGT00940000164275.f.f	ENSGT00940000157360.c.i.a #18	ENSGT00390000017581.b.b.d.b #19	ENSGT00940000164385.a.a.a.b.f #20	ENSGT00390000011204.e #21	ENSGT00390000017860.a.b.f.e #22	ENSGT00390000013956.r #23	ENSGT00940000156877.g.b #24	ENSGT00940000160040.B.a.a.e.b #27	ENSGT01050000244924.a.a.b.a.b.e.a #28	ENSGT00990000206247	ENSGT00940000160280.d.c.a #30	ENSGT00940000161021.a.b.g #31	ENSGT00890000139496.a.h #32	ENSGT00940000155893.b.e #33
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000118166 #8	tubgcp3 (ENSSSAG00000006171) #9	ENSSSAG00000112221 #11	ENSSSAG00000028853	sox1b (ENSSSAG00000091784) #10	arhgef7b (ENSSSAG00000039606) #12	ENSSSAG00000039332 #13	lipt1 (ENSSSAG00000039313) #14	ENSSSAG00000039034 #15	ENSSSAG00000039005 #16	ENSSSAG00000038673 #17	inpp4ab (ENSSSAG00000031267) #18	ENSSSAG00000031058 #19	pou3f3b (ENSSSAG00000083901) #20	mrps9 (ENSSSAG00000030622) #21	ENSSSAG00000054968 #22	ENSSSAG00000054989 #24	ENSSSAG00000097082 #23	ENSSSAG00000086884 #27	ptbp1a (ENSSSAG00000069127) #28	ENSSSAG00000058289	ENSSSAG00000115621 #30	ENSSSAG00000069064 #31	slc7a14a (ENSSSAG00000069049) #33	ENSSSAG00000101469	SLC2A2 (ENSSSAG00000006108) #34	tnika (ENSSSAG00000112433) #35	ENSSSAG00000075620 #36	ENSSSAG00000060629 #37	ENSSSAG00000064788	ENSSSAG00000064092
River trout	MODERN SPECIES	36	tubgcp3 (ENSSTUG00000024512) #9	ATP11A (ENSSTUG00000018974) #11	sox1b (ENSSTUG00000018630) #10	arhgef7b (ENSSTUG00000015815) #12	ENSSTUG00000014720 #13	lipt1 (ENSSTUG00000014646) #14	tsga10 (ENSSTUG00000014562) #15	ENSSTUG00000014543	ENSSTUG00000014518 #16	unc50 (ENSSTUG00000014502) #17	ENSSTUG00000014497	inpp4ab (ENSSTUG00000013043) #18	ENSSTUG00000012937 #19	pou3f3b (ENSSTUG00000012917) #20	mrps9 (ENSSTUG00000012891) #21	ENSSTUG00000012856 #22	ENSSTUG00000012823 #23	ENSSTUG00000012814 #24	ENSSTUG00000012800 #25	efna2a (ENSSTUG00000012794) #27	ptbp1a (ENSSTUG00000012389) #28	ENSSTUG00000012334	ENSSTUG00000012330	GRIN3B (ENSSTUG00000012185) #31	cldn11a (ENSSTUG00000012162) #32	slc7a14a (ENSSTUG00000012153) #33	slc2a2 (ENSSTUG00000011869) #34	ENSSTUG00000011851 #35	pak2a (ENSSTUG00000011713) #37	pls1 (ENSSTUG00000010105)	ATR (ENSSTUG00000010029)
Oncorhynchus	ANCESTRAL SPECIES	70													ENSGT00940000164385.a.a.a.b.g #20	ENSGT01070000253760.b.b.a.a.c.b.d.a.a	ENSGT00390000011204.f.b #21	ENSGT00390000017860.a.b.f.e #22	ENSGT00390000013956.p #23	ENSGT00940000156877.g.b #24	ENSGT01070000253816.a.a.b.p.b #25	ENSGT00940000175375	ENSGT00940000160040.B.a.a.e.b #27	ENSGT01050000244924.a.a.b.a.b.f.b #28	ENSGT00990000206247.a	ENSGT00890000139496.a.h #32	ENSGT00940000155893.b.g #33	ENSGT00940000155708.f.a #34	ENSGT00950000183196.B.e.f.b.a #35	ENSGT00940000154674.q.a.e.a #36	ENSGT00950000182988.a.a.a.l #37	ENSGT00950000183097.a.b.j	ENSGT00940000154674.q.a.e.b #36
Rainbow trout	MODERN SPECIES	9	sox1b (ENSOMYG00000021249) #10	arhgef7b (ENSOMYG00000021518) #12	ENSOMYG00000022188 #13	lipt1 (ENSOMYG00000022239) #14	ENSOMYG00000022246 #15	ENSOMYG00000022260 #16	ENSOMYG00000059228	ENSOMYG00000019074 #17	ENSOMYG00000019107	inpp4ab (ENSOMYG00000019295) #18	ENSOMYG00000019536 #19	ENSOMYG00000069555	pou3f3b (ENSOMYG00000011661) #20	ENSOMYG00000011538	mrps9 (ENSOMYG00000011552) #21	ENSOMYG00000073384 #22	ENSOMYG00000065069 #23	ENSOMYG00000011871 #24	ENSOMYG00000055047 #25	ENSOMYG00000050433 #27	ptbp1a (ENSOMYG00000001791) #28	ENSOMYG00000075091 #30	ENSOMYG00000068301	ENSOMYG00000067927 #31	cldn11a (ENSOMYG00000055325) #32	slc7a14a (ENSOMYG00000002640) #33	ENSOMYG00000055324	slc2a2 (ENSOMYG00000051374) #34	tnika (ENSOMYG00000063166) #35	ENSOMYG00000002765 #36	ENSOMYG00000052728 #37
Oncorhynchus_a	ANCESTRAL SPECIES	92	ENSGT00940000155360.B.k.d #12	ENSGT00940000163243.f #13	ENSGT00390000008846.a.d #14	ENSGT00940000159205.fb.b #15	ENSGT00940000159205.fb.a.a #15	ENSGT00940000163031.b.a.a.f #16	ENSGT00390000018553.e.b #17	ENSGT00940000164275.f.f	ENSGT00940000157360.c.j.b.a #18	ENSGT00940000164275.f.e	ENSGT00940000157360.c.i.a #18	ENSGT00390000017581.b.b.d #19	ENSGT00940000164385.a.a.a.b.g #20	ENSGT01070000253760.b.b.a.a.c.b.d.a.a	ENSGT00390000011204.f.b #21	ENSGT00390000017860.a.b.f.e #22	ENSGT00390000013956.p #23	ENSGT00940000156877.g.b #24	ENSGT01070000253816.a.a.b.p.b #25	ENSGT00940000175375	ENSGT00940000160040.B.a.a.e.b #27	ENSGT01050000244924.a.a.b.a.b.f.b #28	ENSGT00990000206247.a	ENSGT00890000139496.a.h #32	ENSGT00940000155893.b.g #33	ENSGT00940000155708.f.a #34
Chinook salmon	MODERN SPECIES	333												pou3f3b (ENSOTSG00005033826) #20	ENSOTSG00005033825	ENSOTSG00005033824	mrps9 (ENSOTSG00005033806) #21	ENSOTSG00005033804 #22	ENSOTSG00005033803 #24	ENSOTSG00005033801 #25	efna2a (ENSOTSG00005033799) #27
Coho salmon	MODERN SPECIES	7	ENSOKIG00005009797	arhgef7b (ENSOKIG00005008724) #12	ENSOKIG00005007334 #13	lipt1 (ENSOKIG00005007292) #14	ENSOKIG00005007269 #15	ENSOKIG00005007257 #16	UNC50 (ENSOKIG00005007236) #17	ENSOKIG00005007227	inpp4ab (ENSOKIG00005006509) #18	ENSOKIG00005006456 #19	ENSOKIG00005006449	ENSOKIG00005006444	pou3f3b (ENSOKIG00005006420) #20	ENSOKIG00005006410	mrps9 (ENSOKIG00005006386) #21	ENSOKIG00005006354 #22	ENSOKIG00005006337 #23	ENSOKIG00005006330 #24	ENSOKIG00005006320 #25	ENSOKIG00005006309	EFNA2 (ENSOKIG00005006303) #27	ptbp1a (ENSOKIG00005006201) #28	ENSOKIG00005006142	PLPPR3 (ENSOKIG00005006119) #30	cldn11a (ENSOKIG00005006092) #32	slc7a14a (ENSOKIG00005006081) #33	slc2a2 (ENSOKIG00005005618) #34	ENSOKIG00005005587	ENSOKIG00005005553	ENSOKIG00005005532	ENSOKIG00005005522
Salmoninae_a	ANCESTRAL SPECIES	114	ENSGT00940000163243.f #13	ENSGT00390000008846.a #14	ENSGT00940000159205.gb.a #15	ENSGT00390000011204.e #21	ENSGT00390000017860.a.b.f.e #22	ENSGT00940000156877.g.b #24	ENSGT00940000159205.fb #15	ENSGT00940000163031.b.a.a #16	ENSGT00390000018553.e.a #17	ENSGT00940000164275.f.e	ENSGT00940000157360.c.i.b #18	ENSGT00940000157360.c.j.b.a #18	ENSGT00390000017581.b.b.d #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204.f.a #21	ENSGT00390000017860.a.b.f.f #22	ENSGT00390000013956 #23	ENSGT00940000156877.g.a #24	ENSGT01070000253816.a.a.b.p #25	ENSGT00390000005130 #26	ENSGT00940000160040.B.a.a.e.a #27	ENSGT00940000160580.b #29	ENSGT00940000160040.B.a.a.f #27	ENSGT01050000244924.a.a.b.a.b.e.b #28	ENSGT00940000160280.d.c.b #30	ENSGT00940000160040.B.a.a.e.b #27	ENSGT01050000244924.a.a.b.a.b.f #28	ENSGT00940000160280.d.d #30	ENSGT00940000161021.a.b #31	ENSGT00890000139496.a.g #32	ENSGT00940000155893.b #33
Salmo	ANCESTRAL SPECIES	144						ENSGT00940000159205.gb.b #15	ENSGT00940000163031.b.a.a.c #16	ENSGT01090000260365.a.a.b	ENSGT00390000018553.e.a #17	ENSGT00940000164275.f.e	ENSGT00940000157360.c.i.b #18	ENSGT00390000017581.b.b.d.a #19	ENSGT00940000164385.a.a.a.b.e #20	ENSGT01070000253760.b.b.a.a.c.b.d.a.a	ENSGT00390000011204.f.a #21	ENSGT00390000017860.a.b.f.f #22	ENSGT00390000013956.q #23	ENSGT00940000156877.g.a #24	ENSGT01070000253816.a.a.b.p #25	ENSGT00390000005130 #26	ENSGT00940000160040.B.a.a.f #27	ENSGT01050000244924.a.a.b.a.b.e.b #28	ENSGT00940000160580.b #29	ENSGT00940000160280.d.c.b #30	ENSGT00940000161021.a.b.h #31	ENSGT00890000139496.a.g #32	ENSGT00940000155893.b.f #33	ENSGT00940000155708.f.b #34	ENSGT00950000183196.B.e.f.b.b.b #35
River trout	MODERN SPECIES	32	tubgcp3 (ENSSTUG00000045146) #9	ATP11A (ENSSTUG00000045283) #11	sox1b (ENSSTUG00000046415) #10	ARHGEF7 (ENSSTUG00000046486) #12	ENSSTUG00000047795 #13	tsga10 (ENSSTUG00000047918) #15	ENSSTUG00000047938 #16	ENSSTUG00000047943	unc50 (ENSSTUG00000047952) #17	ENSSTUG00000047983	inpp4ab (ENSSTUG00000048010) #18	ENSSTUG00000048288 #19	pou3f3b (ENSSTUG00000048292) #20	ENSSTUG00000048298	mrps9 (ENSSTUG00000048302) #21	ENSSTUG00000048311 #22	ENSSTUG00000048318 #23	ENSSTUG00000048329 #24	ENSSTUG00000048360	ENSSTUG00000023123 #26	efna2a (ENSSTUG00000023172) #27	ptbp1a (ENSSTUG00000023182) #28	plppr3a (ENSSTUG00000023197) #30	cldn11a (ENSSTUG00000023229) #32	ENSSTUG00000023242	slc7a14a (ENSSTUG00000023261) #33	slc2a2 (ENSSTUG00000023403) #34	tnika (ENSSTUG00000023717) #35	ENSSTUG00000030766	ENSSTUG00000030774	ENSSTUG00000030778
Atlantic salmon	MODERN SPECIES	8	tubgcp3 (ENSSSAG00000078807) #9	ENSSSAG00000078974 #11	sox1b (ENSSSAG00000028805) #10	arhgef7b (ENSSSAG00000045555) #12	ENSSSAG00000053976 #13	LIPB (ENSSSAG00000053997) #14	ENSSSAG00000113836	ENSSSAG00000083176	ENSSSAG00000054862 #16	ENSSSAG00000054854 #17	inpp4ab (ENSSSAG00000054024) #18	tm182 (ENSSSAG00000030984) #19	pou3f3b (ENSSSAG00000101862) #20	ENSSSAG00000077018	mrps9 (ENSSSAG00000077015) #21	ENSSSAG00000077004 #22	ENSSSAG00000077000 #23	ENSSSAG00000054998 #25	ENSSSAG00000076998 #24	ENSSSAG00000076993 #26	ENSSSAG00000096664	efna2a (ENSSSAG00000076992) #27	ptbp1 (ENSSSAG00000058273) #28	palm1b (ENSSSAG00000118074) #29	ENSSSAG00000069092 #30	ENSSSAG00000107093 #31	cldn11a (ENSSSAG00000092281) #32	slc7a14a (ENSSSAG00000058384) #33	slc2a2 (ENSSSAG00000060861) #34	tnika (ENSSSAG00000006960) #35	ENSSSAG00000087097 #36
Oncorhynchus	ANCESTRAL SPECIES	74	ENSGT00940000155360.B.k.c #12	ENSGT00940000163243.f #13	ENSGT00390000008846.a.d #14	ENSGT00940000159205.fb.b #15	ENSGT00390000008846.a.c #14	ENSGT00940000159205.fb.a.b #15	ENSGT00940000163031.b.a.a.f #16	ENSGT00390000018553.e.b #17	ENSGT00940000164275.f.f	ENSGT00940000157360.c.j.b.a #18	ENSGT00940000164275.f.e	ENSGT00940000157360.c.i.a #18	ENSGT00390000017581.b.b.d #19	ENSGT00940000164385.a.a.a.b.h #20	ENSGT00390000011204.f.a #21	ENSGT00390000017860.a.b.f.f #22	ENSGT00390000013956.o #23	ENSGT00940000156877.g.a #24	ENSGT01070000253816.a.a.b.p.a #25	ENSGT00390000005130 #26	ENSGT00940000160040.B.a.a.e.a #27	ENSGT01050000244924.a.a.b.a.b.f.a #28	ENSGT00940000160280.d.d.a #30	ENSGT00940000161021.a.b.e #31	ENSGT00890000139496.a.g #32	ENSGT00940000155893.b.h #33	ENSGT00940000155708.f.b #34	ENSGT00950000183196.B.e.f.b.b.a #35	ENSGT01080000257342.H.b.m.b
Rainbow trout	MODERN SPECIES	28	sox1b (ENSOMYG00000010454) #10	arhgef7b (ENSOMYG00000010640) #12	ENSOMYG00000011183 #13	lipt1 (ENSOMYG00000011323) #14	ENSOMYG00000011281 #15	ENSOMYG00000011335 #16	ENSOMYG00000011360 #17	ENSOMYG00000011384	inpp4ab (ENSOMYG00000011410) #18	ENSOMYG00000011513 #19	ENSOMYG00000069545	ENSOMYG00000069232	pou3f3b (ENSOMYG00000011528) #20	ENSOMYG00000066265	mrps9 (ENSOMYG00000067764) #21	ENSOMYG00000011694 #22	ENSOMYG00000011798 #23	ENSOMYG00000001912 #24	ENSOMYG00000001266 #25	ENSOMYG00000001958 #26	ENSOMYG00000001298 #27	ptbp1a (ENSOMYG00000048355) #28	ENSOMYG00000059593	ENSOMYG00000072184 #30	ENSOMYG00000054355 #31	ENSOMYG00000067596	cldn11a (ENSOMYG00000001995) #32	slc7a14a (ENSOMYG00000002080) #33	slc2a2 (ENSOMYG00000002245) #34	ENSOMYG00000002304	tnika (ENSOMYG00000002547) #35
Oncorhynchus_a	ANCESTRAL SPECIES	192														ENSGT00940000164385.a.a.a.b.h #20	ENSGT00390000011204.f.a #21	ENSGT00390000017860.a.b.f.f #22	ENSGT00390000013956.o #23	ENSGT00940000156877.g.a #24	ENSGT01070000253816.a.a.b.p.a #25	ENSGT00390000005130 #26	ENSGT00940000160040.B.a.a.e.a #27	ENSGT01050000244924.a.a.b.a.b.f.a #28	ENSGT00940000160280.d.d.a #30	ENSGT00940000161021.a.b.e #31	ENSGT00890000139496.a.g #32	ENSGT00940000155893.b.h #33
Coho salmon	MODERN SPECIES	25	tubgcp3 (ENSOKIG00005017748) #9	ATP11A (ENSOKIG00005017874) #11	arhgef7b (ENSOKIG00005018087) #12	ENSOKIG00005018911 #13	lipt1 (ENSOKIG00005019106) #14	tsga10 (ENSOKIG00005019118) #15	ENSOKIG00005019152 #16	unc50 (ENSOKIG00005019172) #17	inpp4ab (ENSOKIG00005019209) #18	ENSOKIG00005019508	ENSOKIG00005019513	ENSOKIG00005019520 #19	ENSOKIG00005019544	pou3f3b (ENSOKIG00005019565) #20	mrps9 (ENSOKIG00005019589) #21	ENSOKIG00005019625 #22	ENSOKIG00005019647 #23	MTRF1 (ENSOKIG00005019660) #24	ENSOKIG00005019684 #25	ENSOKIG00005019696 #26	ENSOKIG00005019720 #27	ptbp1a (ENSOKIG00005019747) #28	PLPPR3 (ENSOKIG00005019860) #30	ENSOKIG00005019903 #31	cldn11a (ENSOKIG00005020491) #32	slc7a14a (ENSOKIG00005020500) #33	GHSR (ENSOKIG00005020526)	pld1a (ENSOKIG00005020738)	ELAVL1 (ENSOKIG00005027108)	slc1a8b (ENSOKIG00005027226)	ENSOKIG00005027241
Chinook salmon	MODERN SPECIES	178														pou3f3b (ENSOTSG00005020954) #20	mrps9 (ENSOTSG00005020945) #21	SLAIN1 (ENSOTSG00005020942) #22	ENSOTSG00005020938 #23	MTRF1 (ENSOTSG00005020935) #24	ENSOTSG00005020931 #25	ENSOTSG00005020910 #26	ptbp1a (ENSOTSG00005020908) #28	ptbp1a (ENSOTSG00005020759) #28	ENSOTSG00005020747
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3798															mrps9 (ENSHHUG00000043028) #21	ENSHHUG00000043029 #22	ENSHHUG00000043034 #23	ENSHHUG00000043035 #24	ENSHHUG00000043038	efna2a (ENSHHUG00000043041) #27	ptbp1a (ENSHHUG00000043044) #28	ENSHHUG00000043123
Huchen	MODERN SPECIES	5288														ENSHHUG00000028317	mrps9 (ENSHHUG00000028302) #21	ENSHHUG00000028290 #22	ENSHHUG00000028280 #23	MTRF1 (ENSHHUG00000028271) #24	ENSHHUG00000028265	efna2a (ENSHHUG00000028257) #27	ENSHHUG00000028246 #26
Acanthomorphata	ANCESTRAL SPECIES	158	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00930000151029.i.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00930000151029.i.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c #18
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00940000155065.yb	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Cyprinodontiformes	ANCESTRAL SPECIES	26	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Aplocheiloidei	ANCESTRAL SPECIES	80	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956 #23	ENSGT00940000156877 #24	ENSGT00940000175375	ENSGT00940000159144.A.f
Mangrove rivulus	MODERN SPECIES	308														pou3f3b (ENSKMAG00000002995) #20	mrps9 (ENSKMAG00000003005) #21	ENSKMAG00000003017 #22	jagn1b (ENSKMAG00000003035)	ENSKMAG00000003057	ENSKMAG00000003090	ENSKMAG00000003209 #23	ENSKMAG00000003231 #24	ENSKMAG00000003256	ENSKMAG00000003291
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015003808	lancl1 (ENSNFUG00015003811)	MYLZ3 (ENSNFUG00015003820)	ACADL (ENSNFUG00015003830)	ENSNFUG00015003871	OSBPL11 (ENSNFUG00015003923)	GPD1C (ENSNFUG00015003969)	NCKAP5 (ENSNFUG00015003981)	LYPD1 (ENSNFUG00015003990)	actr3 (ENSNFUG00015003996)	ENSNFUG00015004005 #19	ENSNFUG00015004012	ENSNFUG00015004015	POU3F3B (ENSNFUG00015004017) #20	mrps9 (ENSNFUG00015004033) #21	SLAIN1 (ENSNFUG00015004070) #22	jagn1b (ENSNFUG00015004083)	ENSNFUG00015004097	ENSNFUG00015004185	WBP4 (ENSNFUG00015004530) #23	MTRF1 (ENSNFUG00015004546) #24	TSC22D1 (ENSNFUG00015004555)	NELFA (ENSNFUG00015004572)	FAAH2 (ENSNFUG00015004612)	TESK1 (ENSNFUG00015004650)	pik3c3 (ENSNFUG00015004681)	ENSNFUG00015004797	RGP1 (ENSNFUG00015004827)	GBA2 (ENSNFUG00015004861)	C4orf48 (ENSNFUG00015004928)	NAT8L (ENSNFUG00015004936)
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
NAME_4	ANCESTRAL SPECIES	90	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Mummichog	MODERN SPECIES	2266	lancl1 (ENSFHEG00000008419)	mylz3 (ENSFHEG00000008428)	acadl (ENSFHEG00000008455)	ENSFHEG00000008465	ENSFHEG00000008496	ENSFHEG00000008511	OSBPL11 (ENSFHEG00000008566)	ENSFHEG00000008576	gpd1c (ENSFHEG00000008637)	NCKAP5 (ENSFHEG00000000681)	LYPD1 (ENSFHEG00000008701)	ACTR3 (ENSFHEG00000008744)	ENSFHEG00000008756 #19	pou3f3b (ENSFHEG00000008779) #20	mrps9 (ENSFHEG00000008856) #21	ENSFHEG00000008868 #22	FAM171B (ENSFHEG00000008900)	zswim2 (ENSFHEG00000008914)	ENSFHEG00000008985	ENSFHEG00000009001	ENSFHEG00000009028	ENSFHEG00000009063	pwp2h (ENSFHEG00000009078)
Sheepshead minnow	MODERN SPECIES	265												LYPD1 (ENSCVAG00000000808)	ACTR3 (ENSCVAG00000000211)	pou3f3b (ENSCVAG00000007726) #20	mrps9 (ENSCVAG00000007791) #21	ENSCVAG00000007816 #22	FAM171B (ENSCVAG00000007832)	zswim2 (ENSCVAG00000000212)	ENSCVAG00000008212	ENSCVAG00000014163	ENSCVAG00000014333	pwp2h (ENSCVAG00000000996)	eed (ENSCVAG00000014409)	ATP7B (ENSCVAG00000014446)	ENSCVAG00000014466	LRRC3 (ENSCVAG00000014472)	ENSCVAG00000014482	ENSCVAG00000014489	gpd2 (ENSCVAG00000014507)	NR4A2 (ENSCVAG00000014515)	ENSCVAG00000014521
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Poecilia	ANCESTRAL SPECIES	45	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
NAME_6	ANCESTRAL SPECIES	239					ENSGT00940000157652.s	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Sailfin molly	MODERN SPECIES	1409														pou3f3b (ENSPLAG00000008124) #20	mrps9 (ENSPLAG00000008098) #21	ENSPLAG00000008045 #22	FAM171B (ENSPLAG00000008034)	ENSPLAG00000008015
Amazon molly	MODERN SPECIES	309			acadl (ENSPFOG00000012140)	ENSPFOG00000012261	ENSPFOG00000012328	ENSPFOG00000023505	UNC80 (ENSPFOG00000012390)	OSBPL11 (ENSPFOG00000013280)	gpd1c (ENSPFOG00000013450)	NCKAP5 (ENSPFOG00000013527)	LYPD1 (ENSPFOG00000013617)	actr3 (ENSPFOG00000013626)	ENSPFOG00000013697 #19	pou3f3b (ENSPFOG00000013701) #20	mrps9 (ENSPFOG00000013721) #21	ENSPFOG00000013825 #22	FAM171B (ENSPFOG00000013868)	ENSPFOG00000021831	ENSPFOG00000013924	COL5A2 (ENSPFOG00000014044)	ENSPFOG00000014758	pwp2h (ENSPFOG00000014764)	eed (ENSPFOG00000014791)	ATP7B (ENSPFOG00000014876)	LRRC3 (ENSPFOG00000020176)	ENSPFOG00000015051	ENSPFOG00000015163
Guppy	MODERN SPECIES	450	RAMP1 (ENSPREG00000016819)	erbb4a (ENSPREG00000016755)	lancl1 (ENSPREG00000016732)	mylz3 (ENSPREG00000016719)	ENSPREG00000016631	ENSPREG00000016604	UNC80 (ENSPREG00000016482)	OSBPL11 (ENSPREG00000016431)	gpd1c (ENSPREG00000016404)	NCKAP5 (ENSPREG00000016365)	LYPD1 (ENSPREG00000016343)	ENSPREG00000016318	ENSPREG00000016302 #19	pou3f3b (ENSPREG00000016284) #20	mrps9 (ENSPREG00000016254) #21	ENSPREG00000016230 #22	FAM171B (ENSPREG00000016216)	zswim2 (ENSPREG00000016206)	ENSPREG00000016193	ENSPREG00000016172	COL5A2 (ENSPREG00000015993)	ENSPREG00000015932	pwp2h (ENSPREG00000015887)	eed (ENSPREG00000015809)	ATP7B (ENSPREG00000015767)	LRRC3 (ENSPREG00000015757)	ENSPREG00000015736	ENSPREG00000015714	gpd2 (ENSPREG00000015690)	NR4A2 (ENSPREG00000015677)	ENSPREG00000015663
Platyfish	MODERN SPECIES	16	mylz3 (ENSXMAG00000029420)	acadl (ENSXMAG00000004697)	ENSXMAG00000026703	acadl (ENSXMAG00000026099)	ENSXMAG00000014512	ENSXMAG00000025117	OSBPL11 (ENSXMAG00000007933)	gpd1c (ENSXMAG00000007949)	NCKAP5 (ENSXMAG00000003034)	LYPD1 (ENSXMAG00000007958)	ACTR3 (ENSXMAG00000007959)	ENSXMAG00000026038 #19	ENSXMAG00000022133	pou3f3b (ENSXMAG00000021922) #20	mrps9 (ENSXMAG00000007974) #21	ENSXMAG00000007979 #22	ENSXMAG00000022497	zswim2 (ENSXMAG00000024598)	ENSXMAG00000007989	ENSXMAG00000007999	ENSXMAG00000008123	pwp2h (ENSXMAG00000008124)	eed (ENSXMAG00000008149)	ATP7B (ENSXMAG00000008157)	LRRC3 (ENSXMAG00000019730)	ENSXMAG00000008175	ENSXMAG00000029591	gpd2 (ENSXMAG00000008190)	NR4A2 (ENSXMAG00000008198)	TUBA4A (ENSXMAG00000026340)	ENSXMAG00000008207
Oryzias	ANCESTRAL SPECIES	55	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00940000155773.a	ENSGT01030000235131	ENSGT00390000014376.c.b	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT00940000165423.a.b	ENSGT01100000263489.a.b.a.b.b.a.a.a.a.b.a.b	ENSGT01020000230582	ENSGT01100000263489.a.b.a.b.b.a.b.a.a.b	ENSGT00390000017193
Oryzias_a	ANCESTRAL SPECIES	76	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.e	ENSGT00940000154840.b.f.c.a	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00940000155773.a	ENSGT01030000235131	ENSGT00390000014376.c.b	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT00940000165423.a.b
Chinese medaka	MODERN SPECIES	229			ATP1A1 (ENSOSIG00000003574)	ENSOSIG00000003306	ccdc28a (ENSOSIG00000003296)	FILIP1L (ENSOSIG00000003291)	ENSOSIG00000003286	COL8A1 (ENSOSIG00000003281)	ACTR3 (ENSOSIG00000003238)	LYPD1 (ENSOSIG00000003228)	NCKAP5 (ENSOSIG00000003206)	gpd1c (ENSOSIG00000003177)	OSBPL11 (ENSOSIG00000001053)	pou3f3b (ENSOSIG00000001036) #20	mrps9 (ENSOSIG00000000621) #21	ENSOSIG00000000618 #22	si:dkey-276j7.1 (ENSOSIG00000000617)	ENSOSIG00000000616	ENSOSIG00000000615	ENSOSIG00000000607	ENSOSIG00000000603
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000027612	prox1a (ENSORLG00000001996)	ccdc28a (ENSORLG00000026855)	ENSORLG00000024492	FILIP1L (ENSORLG00000001976)	ENSORLG00000001973	COL8A1 (ENSORLG00000001968)	ACTR3 (ENSORLG00000001964)	ENSORLG00000028132	NCKAP5 (ENSORLG00000001953)	gpd1c (ENSORLG00000001939)	OSBPL11 (ENSORLG00000001914)	ENSORLG00000023000	pou3f3b (ENSORLG00000001901) #20	mrps9 (ENSORLG00000001896) #21	ENSORLG00000001882 #22	ENSORLG00000001869	ENSORLG00000001854	ENSORLG00000001848	ENSORLG00000023893	ENSORLG00000001841	ENSORLG00000027125	ENSORLG00000027116	ENSORLG00000028915	ENSORLG00000029493	ENSORLG00000028867	ENSORLG00000030461	ENSORLG00000029234	ENSORLG00000027982	ENSORLG00000001809	ENSORLG00000023548
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00940000155773.a	ENSGT01030000235131	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT00390000003194.n.a	ENSGT00390000003194.n.b	ENSGT00940000165423.a.b	ENSGT01070000253760.b.a.a.a.b.a.a.a.a.a.a.a.a.a.a.b	ENSGT01100000263489.a.b.a.b.b.a.a.b.a.b.a.b.a.b.b.a	ENSGT01100000263489.a.b.a.b.b.a.a.a.a.b.a.b	ENSGT01020000230582	ENSGT01100000263489.a.b.a.b.b.a.a.b.a.a.a.a.a.b.a.b.b.b.b.b.a	ENSGT01100000263489.a.b.a.b.b.a.b.a.a.b	ENSGT00390000017193	ENSGT00940000154095.b.b.a.a
Javanese ricefish	MODERN SPECIES	11	klf7a (ENSOJAG00000010793)	si:ch211-93g23.2 (ENSOJAG00000010785)	RAMP1 (ENSOJAG00000010777)	erbb4a (ENSOJAG00000006976)	ENSOJAG00000006555	lancl1 (ENSOJAG00000006445)	acadl (ENSOJAG00000005560)	ENSOJAG00000005443	gpd1c (ENSOJAG00000005357)	ENSOJAG00000005329	ENSOJAG00000005320	LYPD1 (ENSOJAG00000005312)	actr3 (ENSOJAG00000005253)	pou3f3b (ENSOJAG00000005234) #20	mrps9 (ENSOJAG00000005057) #21	ENSOJAG00000005026 #22	ENSOJAG00000003970	ENSOJAG00000003735	ENSOJAG00000003720	ENSOJAG00000003675	ENSOJAG00000003657	ENSOJAG00000003136	ENSOJAG00000003123	ENSOJAG00000003109	ENSOJAG00000003095	ENSOJAG00000003071	ENSOJAG00000003065	ENSOJAG00000003057	ENSOJAG00000003054	ENSOJAG00000003049	ENSOJAG00000003045
Indian medaka	MODERN SPECIES	20	ENSOMEG00000014454	ccdc28a (ENSOMEG00000014477)	COL8A1 (ENSOMEG00000014510)	ENSOMEG00000014548	atp6v1c1a (ENSOMEG00000014607)	azin1a (ENSOMEG00000014684)	ENSOMEG00000000368	ncalda (ENSOMEG00000014721)	ubr5 (ENSOMEG00000014794)	ENSOMEG00000014819	ENSOMEG00000014858	LAPTM4B (ENSOMEG00000014886)	MATN2 (ENSOMEG00000015004)	pou3f3b (ENSOMEG00000015038) #20	mrps9 (ENSOMEG00000015064) #21	SLAIN1 (ENSOMEG00000015080) #22	ENSOMEG00000015117	ENSOMEG00000015135	ENSOMEG00000015178	ENSOMEG00000015195	ENSOMEG00000015224	ENSOMEG00000015244	ENSOMEG00000015250	ENSOMEG00000015262	ENSOMEG00000015276	ENSOMEG00000015378	ENSOMEG00000015420	ENSOMEG00000015439	ENSOMEG00000015453	ENSOMEG00000015460	ENSOMEG00000015490
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c #18	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c #18	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Nile tilapia	MODERN SPECIES	14	RAMP1 (ENSONIG00000013384)	erbb4a (ENSONIG00000013385)	lancl1 (ENSONIG00000039677)	mylz3 (ENSONIG00000013405)	acadl (ENSONIG00000013415)	ENSONIG00000031428	ENSONIG00000013432	OSBPL11 (ENSONIG00000013436)	NCKAP5 (ENSONIG00000013447)	gpd1c (ENSONIG00000013442)	LYPD1 (ENSONIG00000042130)	actr3 (ENSONIG00000013451)	ENSONIG00000040824 #19	pou3f3b (ENSONIG00000033851) #20	mrps9 (ENSONIG00000013457) #21	SLAIN1 (ENSONIG00000013458) #22	ENSONIG00000013460	inpp4ab (ENSONIG00000007183) #18	ENSONIG00000007178	ENSONIG00000007142	ENSONIG00000007140	pwp2h (ENSONIG00000007136)	eed (ENSONIG00000007134)	ATP7B (ENSONIG00000012121)	LRRC3 (ENSONIG00000021036)	ENSONIG00000012122	ENSONIG00000041348	gpd2 (ENSONIG00000012127)	NR4A2 (ENSONIG00000012131)	ENSONIG00000038870	ENSONIG00000012140
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c #18	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Lyretail cichlid	MODERN SPECIES	315					ENSNBRG00000017269	UNC80 (ENSNBRG00000017115)	ENSNBRG00000017069	OSBPL11 (ENSNBRG00000017006)	gpd1c (ENSNBRG00000016963)	NCKAP5 (ENSNBRG00000016948)	LYPD1 (ENSNBRG00000016930)	actr3 (ENSNBRG00000016906)	ENSNBRG00000016892 #19	pou3f3b (ENSNBRG00000016867) #20	mrps9 (ENSNBRG00000016845) #21	SLAIN1 (ENSNBRG00000016815) #22	ENSNBRG00000016769	INPP4A (ENSNBRG00000016726) #18	ENSNBRG00000016687	ENSNBRG00000016673	ENSNBRG00000016650	ENSNBRG00000016629	pwp2h (ENSNBRG00000016527)	eed (ENSNBRG00000016506)	ATP7B (ENSNBRG00000016446)	ENSNBRG00000016409	ENSNBRG00000016366	gpd2 (ENSNBRG00000016315)	nr4a2b (ENSNBRG00000016182)	ENSNBRG00000016160	ENSNBRG00000016116
Haplochromini	ANCESTRAL SPECIES	41	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c #18	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Haplochromini_A	ANCESTRAL SPECIES	76	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c #18	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
P. nyererei	MODERN SPECIES	413	lancl1 (ENSPNYG00000009191)	mylz3 (ENSPNYG00000009169)	acadl (ENSPNYG00000009136)	ENSPNYG00000009098	ENSPNYG00000009075	ENSPNYG00000009023	OSBPL11 (ENSPNYG00000008964)	gpd1c (ENSPNYG00000008925)	NCKAP5 (ENSPNYG00000008855)	LYPD1 (ENSPNYG00000008826)	actr3 (ENSPNYG00000008790)	ENSPNYG00000008774 #19	ENSPNYG00000008750	pou3f3b (ENSPNYG00000008739) #20	mrps9 (ENSPNYG00000008697) #21	ENSPNYG00000008662 #22	ENSPNYG00000008633	INPP4A (ENSPNYG00000008561) #18	ENSPNYG00000008513	ENSPNYG00000008421	ENSPNYG00000008393	pwp2h (ENSPNYG00000008379)	eed (ENSPNYG00000008359)
Haplochromini_B	ANCESTRAL SPECIES	91	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c #18	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Eastern happy	MODERN SPECIES	14	mylz3 (ENSACLG00000009730)	acadl (ENSACLG00000009736)	ENSACLG00000009755	UNC80 (ENSACLG00000010248)	ENSACLG00000010303	OSBPL11 (ENSACLG00000010308)	gpd1c (ENSACLG00000010329)	NCKAP5 (ENSACLG00000010348)	LYPD1 (ENSACLG00000010372)	actr3 (ENSACLG00000010384)	ENSACLG00000010396 #19	ENSACLG00000010404	pou3f3b (ENSACLG00000010758) #20	ENSACLG00000010806	mrps9 (ENSACLG00000010815) #21	SLAIN1 (ENSACLG00000010893) #22	ENSACLG00000010924	inpp4ab (ENSACLG00000010937) #18	ENSACLG00000010997	ENSACLG00000011037	ENSACLG00000011140	pwp2h (ENSACLG00000011425)	eed (ENSACLG00000011473)	ATP7B (ENSACLG00000011489)	ENSACLG00000011525	ENSACLG00000011541	ENSACLG00000011549	ENSACLG00000011572	ENSACLG00000011578	zgc:172131 (ENSACLG00000011585)	ENSACLG00000011599
Zebra mbuna	MODERN SPECIES	1105	lancl1 (ENSMZEG00005014788)	mylz3 (ENSMZEG00005014804)	acadl (ENSMZEG00005014822)	ENSMZEG00005014849	UNC80 (ENSMZEG00005015080)	ENSMZEG00005015129	OSBPL11 (ENSMZEG00005015141)	gpd1c (ENSMZEG00005015157)	NCKAP5 (ENSMZEG00005015180)	LYPD1 (ENSMZEG00005015213)	ACTR3 (ENSMZEG00005015223)	ENSMZEG00005015233 #19	ENSMZEG00005015241	pou3f3b (ENSMZEG00005015253) #20	mrps9 (ENSMZEG00005015264) #21	SLAIN1 (ENSMZEG00005015282) #22	ENSMZEG00005015297	inpp4ab (ENSMZEG00005015313) #18	ENSMZEG00005015345	ENSMZEG00005015382	ENSMZEG00005015426	pwp2h (ENSMZEG00005015448)	eed (ENSMZEG00005015490)	ENSMZEG00005015497	gpd2 (ENSMZEG00005015505)	nr4a2b (ENSMZEG00005015529)	ENSMZEG00005015539	ENSMZEG00005015580	mfsd6a (ENSMZEG00005015608)	ENSMZEG00005015623	ahr1b (ENSMZEG00005015628)
Burton s mouthbrooder	MODERN SPECIES	304	lancl1 (ENSHBUG00000004582)	mylz3 (ENSHBUG00000000111)	acadl (ENSHBUG00000004635)	ENSHBUG00000004642	UNC80 (ENSHBUG00000004774)	ENSHBUG00000004820	OSBPL11 (ENSHBUG00000004848)	gpd1c (ENSHBUG00000004876)	NCKAP5 (ENSHBUG00000004916)	LYPD1 (ENSHBUG00000004940)	actr3 (ENSHBUG00000004956)	ENSHBUG00000004970 #19	ENSHBUG00000005011	pou3f3b (ENSHBUG00000000126) #20	mrps9 (ENSHBUG00000005067) #21	SLAIN1 (ENSHBUG00000005081) #22	FAM171B (ENSHBUG00000005092)	INPP4A (ENSHBUG00000005299) #18	ENSHBUG00000005353	ENSHBUG00000005415	ENSHBUG00000005434	ENSHBUG00000005457	pwp2h (ENSHBUG00000005530)	eed (ENSHBUG00000005542)	ENSHBUG00000005560	WDR49 (ENSHBUG00000005604)	pdcd10a (ENSHBUG00000005860)	serpini1 (ENSHBUG00000005921)	ENSHBUG00000005934	ENSHBUG00000005939	ENSHBUG00000005954
Midas cichlid	MODERN SPECIES	1022	RAMP1 (ENSACIG00000024059)	erbb4a (ENSACIG00000024060)	lancl1 (ENSACIG00000024064)	mylz3 (ENSACIG00000024069)	acadl (ENSACIG00000024075)	ENSACIG00000024076	ENSACIG00000024077	OSBPL11 (ENSACIG00000024078)	gpd1c (ENSACIG00000024080)	NCKAP5 (ENSACIG00000024082)	LYPD1 (ENSACIG00000024083)	actr3 (ENSACIG00000024085)	ENSACIG00000024086 #19	pou3f3b (ENSACIG00000024088) #20	mrps9 (ENSACIG00000024089) #21	ENSACIG00000024092 #22	ENSACIG00000024094	inpp4ab (ENSACIG00000024097) #18	ENSACIG00000024101	ENSACIG00000024104	ENSACIG00000024105	ENSACIG00000024107	pwp2h (ENSACIG00000024109)	eed (ENSACIG00000024110)	ENSACIG00000024113
Pomacentridae	ANCESTRAL SPECIES	200																ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Bicolor damselfish	MODERN SPECIES	1128																SLAIN1 (ENSSPAG00000023388) #22	FAM171B (ENSSPAG00000023385)	zswim2 (ENSSPAG00000023383)	ENSSPAG00000023380	ENSSPAG00000023376	ENSSPAG00000023373	pwp2h (ENSSPAG00000023368)	eed (ENSSPAG00000023363)	ATP7B (ENSSPAG00000023357)	LRRC3 (ENSSPAG00000023355)	ENSSPAG00000023341	ENSSPAG00000023327
Pomacentridae_A	ANCESTRAL SPECIES	272																ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000177931
Amphiprion	ANCESTRAL SPECIES	126						ENSGT00940000165301.b	ENSGT00940000158265	ENSGT00940000158614	ENSGT00940000156634.b	ENSGT00940000158687.a.b	ENSGT00940000178221	ENSGT00940000159723	ENSGT00940000154851.A	ENSGT00940000166110	ENSGT00940000155009.b	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000165508	ENSGT00390000009987	ENSGT00390000006347.b	ENSGT00390000010308	ENSGT00950000183022.a.b
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000007456	vamp1a (ENSAPEG00000007478)	vamp1a (ENSAPEG00000007503)	vamp1a (ENSAPEG00000007525)	ENSAPEG00000007545	ENSAPEG00000007568	clcn4 (ENSAPEG00000007651)	ephx2 (ENSAPEG00000007677)	plaat1l (ENSAPEG00000007696)	ENSAPEG00000007724	ENSAPEG00000007740	dusp27 (ENSAPEG00000007759)	ENSAPEG00000007776	cybb (ENSAPEG00000007823)	dynlt3 (ENSAPEG00000007870)	slain1b (ENSAPEG00000007892) #22	FAM171B (ENSAPEG00000007899)	ENSAPEG00000007932	ENSAPEG00000007959	ENSAPEG00000007995	ENSAPEG00000008011	LRRC3 (ENSAPEG00000008027)	ATP7B (ENSAPEG00000008040)	eed (ENSAPEG00000008130)	pwp2h (ENSAPEG00000008152)	ENSAPEG00000008229	ENSAPEG00000008265	ENSAPEG00000008318	ENSAPEG00000008343	atg3 (ENSAPEG00000008361)	SLC19A2 (ENSAPEG00000008374)
Clown anemonefish	MODERN SPECIES	244				vamp1a (ENSAOCG00000008076)	ENSAOCG00000008162	clcn4 (ENSAOCG00000008213)	ephx2 (ENSAOCG00000008233)	plaat1l (ENSAOCG00000008258)	ENSAOCG00000008278	ENSAOCG00000008292	dusp27 (ENSAOCG00000008299)	ENSAOCG00000008316	ENSAOCG00000000486	cybb (ENSAOCG00000008399)	dynlt3 (ENSAOCG00000008405)	slain1b (ENSAOCG00000008430) #22	FAM171B (ENSAOCG00000008444)	zswim2 (ENSAOCG00000008474)	ENSAOCG00000008515	ENSAOCG00000008550	ENSAOCG00000008592	LRRC3 (ENSAOCG00000008600)
Spiny chromis	MODERN SPECIES	562																SLAIN1 (ENSAPOG00000000515) #22	ENSAPOG00000018722	zswim2 (ENSAPOG00000018703)	ENSAPOG00000018607	ENSAPOG00000018542	ENSAPOG00000000505	MAMDC2 (ENSAPOG00000018503)	slc30a5 (ENSAPOG00000018484)	ENSAPOG00000018408	TMC2 (ENSAPOG00000018396)	zfand5b (ENSAPOG00000018070)	ccnb1 (ENSAPOG00000018055)	pmchl (ENSAPOG00000018043)	ENSAPOG00000018011	ENSAPOG00000017999	alad (ENSAPOG00000017987)
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Ballan wrasse	MODERN SPECIES	65	lancl1 (ENSLBEG00000007526)	mylz3 (ENSLBEG00000007506)	acadl (ENSLBEG00000007469)	ENSLBEG00000007407	ENSLBEG00000007366	ENSLBEG00000007343	OSBPL11 (ENSLBEG00000007267)	gpd1c (ENSLBEG00000007203)	NCKAP5 (ENSLBEG00000007143)	LYPD1 (ENSLBEG00000007128)	actr3 (ENSLBEG00000007072)	ENSLBEG00000007033 #19	pou3f3b (ENSLBEG00000007009) #20	ENSLBEG00000006977	mrps9 (ENSLBEG00000006954) #21	SLAIN1 (ENSLBEG00000006927) #22	FAM171B (ENSLBEG00000006878)	zswim2 (ENSLBEG00000006844)	ENSLBEG00000006775	ENSLBEG00000006549	ENSLBEG00000006488	pwp2h (ENSLBEG00000006388)	eed (ENSLBEG00000006356)	ATP7B (ENSLBEG00000006266)	LRRC3 (ENSLBEG00000006245)	ENSLBEG00000006201	ENSLBEG00000006143	gpd2 (ENSLBEG00000006019)	nr4a2b (ENSLBEG00000005973)	ENSLBEG00000005944	ENSLBEG00000005866
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Perciformes	ANCESTRAL SPECIES	27							ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Cottioidei	ANCESTRAL SPECIES	48	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a
Stickleback	MODERN SPECIES		ENSGACG00000013610	ENSGACG00000013612	dhrs13a.3 (ENSGACG00000013614)	dhrs13b.1 (ENSGACG00000013619)	akap1b (ENSGACG00000013633)	cuedc1b (ENSGACG00000013641)	wsb1 (ENSGACG00000013651)	KSR1 (ENSGACG00000013663)	lgals9l5 (ENSGACG00000013667)	MYO18A (ENSGACG00000013682)	pipox (ENSGACG00000013689)	ENSGACG00000013700	ENSGACG00000013701	PHF12 (ENSGACG00000013703)	pou3f3b (ENSGACG00000013707) #20	ENSGACG00000013709 #22	ENSGACG00000013710	ENSGACG00000013712	ENSGACG00000013725 #23	MTRF1 (ENSGACG00000013728) #24	ENSGACG00000013730	ENSGACG00000013733	ENSGACG00000013738	ENSGACG00000013742	nop58 (ENSGACG00000013746)	wdr12 (ENSGACG00000013778)	ICA1L (ENSGACG00000013811)	FAM117B (ENSGACG00000013815)	bmpr2a (ENSGACG00000013817)	ENSGACG00000013821	slc15a1b (ENSGACG00000013831)
Lumpfish	MODERN SPECIES	11	ENSCLMG00005004061	ENSCLMG00005004058	ENSCLMG00005003879	zswim2 (ENSCLMG00005003873)	FAM171B (ENSCLMG00005003871)	ENSCLMG00005003860	ENSCLMG00005003870	OSBPL11 (ENSCLMG00005003844)	gpd1c (ENSCLMG00005003822)	NCKAP5 (ENSCLMG00005003817)	ENSCLMG00005003813	actr3 (ENSCLMG00005003694)	ENSCLMG00005003691 #19	pou3f3b (ENSCLMG00005003690) #20	mrps9 (ENSCLMG00005003170) #21	ENSCLMG00005003157 #22	n6amt1 (ENSCLMG00005003150)	gart (ENSCLMG00005003036)	ENSCLMG00005002951 #23	ENSCLMG00005002934 #24	ENSCLMG00005002920	ENSCLMG00005002907	ENSCLMG00005002895	ENSCLMG00005002877	ENSCLMG00005002826	ENSCLMG00005011335	ENSCLMG00005011334	ENSCLMG00005011332	ENSCLMG00005011326	ENSCLMG00005011322	ENSCLMG00005011318
Perciformes_a	ANCESTRAL SPECIES	29	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a
Pike perch	MODERN SPECIES	9	FARP1 (ENSSLUG00000025804)	ggact.3 (ENSSLUG00000025819)	arl13b (ENSSLUG00000025823)	NCAM2 (ENSSLUG00000025829)	ENSSLUG00000025834	gart (ENSSLUG00000025845)	n6amt1 (ENSSLUG00000025852)	OSBPL11 (ENSSLUG00000025859)	gpd1c (ENSSLUG00000025864)	NCKAP5 (ENSSLUG00000025867)	LYPD1 (ENSSLUG00000025873)	actr3 (ENSSLUG00000025880)	ENSSLUG00000025884 #19	pou3f3b (ENSSLUG00000025885) #20	mrps9 (ENSSLUG00000025888) #21	ENSSLUG00000025889 #22	FAM171B (ENSSLUG00000025890)	zswim2 (ENSSLUG00000025891)	ENSSLUG00000025893	ENSSLUG00000025899	ENSSLUG00000025902	ENSSLUG00000025903	pwp2h (ENSSLUG00000025908)	ATP7B (ENSSLUG00000025934)	LRRC3 (ENSSLUG00000025954)	ENSSLUG00000025955	ENSSLUG00000025956	gpd2 (ENSSLUG00000025959)	nr4a2b (ENSSLUG00000025961)	ENSSLUG00000025963	ENSSLUG00000025976
Channel bull blenny	MODERN SPECIES	11	arl13b (ENSCGOG00000010733)	NCAM2 (ENSCGOG00000010755)	ENSCGOG00000011560	ENSCGOG00000011561	gart (ENSCGOG00000011590)	n6amt1 (ENSCGOG00000012715)	ENSCGOG00000012716	OSBPL11 (ENSCGOG00000012722)	gpd1c (ENSCGOG00000012810)	NCKAP5 (ENSCGOG00000013216)	LYPD1 (ENSCGOG00000013222)	actr3 (ENSCGOG00000013242)	ENSCGOG00000013928 #19	pou3f3b (ENSCGOG00000013930) #20	mrps9 (ENSCGOG00000013936) #21	ENSCGOG00000014061 #22	n6amt1 (ENSCGOG00000014068)	FAM171B (ENSCGOG00000014069)	zswim2 (ENSCGOG00000014072)	ENSCGOG00000014080	ENSCGOG00000014139	ENSCGOG00000014216	pwp2h (ENSCGOG00000014224)	eed (ENSCGOG00000014468)	ATP7B (ENSCGOG00000014706)	LRRC3 (ENSCGOG00000016789)	PCBP3 (ENSCGOG00000016792)	ENSCGOG00000016794	gpd2 (ENSCGOG00000016825)	nr4a2b (ENSCGOG00000017337)	ENSCGOG00000017339
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d.cb	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d.cb	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Large yellow croaker	MODERN SPECIES	486	erbb4a (ENSLCRG00005004324)	ENSLCRG00005004961	lancl1 (ENSLCRG00005004963)	mylz3 (ENSLCRG00005004965)	acadl (ENSLCRG00005004993)	ENSLCRG00005005063	ENSLCRG00005005071	OSBPL11 (ENSLCRG00005005075)	gpd1c (ENSLCRG00005005078)	NCKAP5 (ENSLCRG00005005087)	LYPD1 (ENSLCRG00005005090)	actr3 (ENSLCRG00005005092)	ENSLCRG00005005108 #19	pou3f3b (ENSLCRG00005005109) #20	mrps9 (ENSLCRG00005005112) #21	SLAIN1 (ENSLCRG00005005207) #22	FAM171B (ENSLCRG00005005210)	zswim2 (ENSLCRG00005005211)	ENSLCRG00005005215	ENSLCRG00005005225	clcn4 (ENSLCRG00005005283)	ENSLCRG00005005464	ENSLCRG00005005469	CLASP1 (ENSLCRG00005005519)	gli2b (ENSLCRG00005008478)	INHBB (ENSLCRG00005008479)	ENSLCRG00005008480	faimb (ENSLCRG00005008481)	AGAP1 (ENSLCRG00005008491)	gbx2 (ENSLCRG00005009560)	ENSLCRG00005009563
European seabass	MODERN SPECIES	15	ENSDLAG00005026609	erbb4a (ENSDLAG00005026285)	lancl1 (ENSDLAG00005028062)	mylz3 (ENSDLAG00005026275)	ACADL (ENSDLAG00005026259)	ENSDLAG00005026247	ENSDLAG00005026239	ENSDLAG00005026236	ENSDLAG00005026230	ENSDLAG00005026223	ENSDLAG00005027126	ENSDLAG00005026218	ENSDLAG00005026217	ENSDLAG00005026212 #20	ENSDLAG00005026210 #21	ENSDLAG00005028117 #22	ENSDLAG00005031664	ENSDLAG00005033457	ENSDLAG00005026194	ENSDLAG00005026180	ENSDLAG00005032136	ENSDLAG00005026175	ENSDLAG00005026165	ENSDLAG00005026359	ENSDLAG00005026064	ENSDLAG00005028144	ENSDLAG00005026006	ENSDLAG00005026002	ENSDLAG00005025994	ENSDLAG00005025989	ENSDLAG00005025985
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010017958	ENSSAUG00010017955	ENSSAUG00010017954	ENSSAUG00010017953	ENSSAUG00010017952	ENSSAUG00010017947	OSBPL11 (ENSSAUG00010017936)	gpd1c (ENSSAUG00010017909)	NCKAP5 (ENSSAUG00010017901)	LYPD1 (ENSSAUG00010017899)	actr3 (ENSSAUG00010017878)	ENSSAUG00010017876 #19	pou3f3b (ENSSAUG00010017873) #20	mrps9 (ENSSAUG00010017854) #21	ENSSAUG00010017850	SLAIN1 (ENSSAUG00010017846) #22	ENSSAUG00010017840	ENSSAUG00010017837	ENSSAUG00010017836	ENSSAUG00010017834	ENSSAUG00010017832	ENSSAUG00010026067	FAM171B (ENSSAUG00010026066)	ENSSAUG00010026065	ENSSAUG00010026059	pwp2h (ENSSAUG00010026036)	ATP7B (ENSSAUG00010025265)	LRRC3 (ENSSAUG00010025253)	ENSSAUG00010025252	ENSSAUG00010025183	ENSSAUG00010025177
Gilthead seabream	MODERN SPECIES	78																ENSSAUG00010019976 #22	ENSSAUG00010019983
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Anabantaria	ANCESTRAL SPECIES	32								ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Anabantoidei	ANCESTRAL SPECIES	28	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c #18	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Climbing perch	MODERN SPECIES	11	ENSATEG00000014233	ENSATEG00000014443	ENSATEG00000014519 #18	ENSATEG00000014628	ENSATEG00000026630	ENSATEG00000014678	ENSATEG00000014800	ENSATEG00000014880	ENSATEG00000014967	ENSATEG00000015005	ENSATEG00000015044	ENSATEG00000015062	ENSATEG00000015108 #19	ENSATEG00000015179 #20	mrps9 (ENSATEG00000015199) #21	ENSATEG00000015213 #22	FAM171B (ENSATEG00000015221)	ENSATEG00000015273	ENSATEG00000015305	ENSATEG00000026059	ENSATEG00000015465	ENSATEG00000015493	ENSATEG00000015756	ENSATEG00000015772	ENSATEG00000015787	ENSATEG00000026622	ENSATEG00000015871	ENSATEG00000016006	ACADL (ENSATEG00000016035)	mylz3 (ENSATEG00000016065)	LANCL1 (ENSATEG00000016083)
Siamese fighting fish	MODERN SPECIES	10	ALS2 (ENSBSLG00000003776)	CHRNA2 (ENSBSLG00000003586)	zgc:113142 (ENSBSLG00000003212)	inpp4ab (ENSBSLG00000003185) #18	ENSBSLG00000002627	ENSBSLG00000001877	NR4A2 (ENSBSLG00000001870)	gpd2 (ENSBSLG00000001802)	OSBPL11 (ENSBSLG00000001729)	gpd1c (ENSBSLG00000001710)	NCKAP5 (ENSBSLG00000001671)	LYPD1 (ENSBSLG00000001663)	actr3 (ENSBSLG00000001636)	pou3f3b (ENSBSLG00000001618) #20	mrps9 (ENSBSLG00000001466) #21	ENSBSLG00000001411 #22	FAM171B (ENSBSLG00000001401)	ENSBSLG00000001392	ENSBSLG00000001375	ENSBSLG00000001320	ENSBSLG00000001294	pwp2h (ENSBSLG00000001247)	eed (ENSBSLG00000000888)	ATP7B (ENSBSLG00000000664)	ENSBSLG00000000540	LRRC3 (ENSBSLG00000000527)	ENSBSLG00000000465	ENSBSLG00000000444	ENSBSLG00000000394	acadl (ENSBSLG00000000333)	ENSBSLG00000000302
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000022334	ENSMAMG00000022327	ENSMAMG00000022325	ENSMAMG00000022323	ENSMAMG00000022320	ENSMAMG00000022315	ENSMAMG00000022309	ENSMAMG00000022306	ENSMAMG00000022304	ENSMAMG00000022299	ENSMAMG00000022296	ENSMAMG00000022293	ENSMAMG00000022292 #19	ENSMAMG00000022291 #20	mrps9 (ENSMAMG00000022287) #21	ENSMAMG00000022284 #22	zc3h13 (ENSMAMG00000022274)	cpb2 (ENSMAMG00000022271)	alg11 (ENSMAMG00000022268)	spp2 (ENSMAMG00000022266)	raph1b (ENSMAMG00000022248)	ENSMAMG00000022240	ENSMAMG00000022239	mdh1b (ENSMAMG00000022235)	retreg2 (ENSMAMG00000022232)	ENSMAMG00000022222	cnppd1 (ENSMAMG00000022216)	abcb6a (ENSMAMG00000022210)	ENSMAMG00000022194	ENSMAMG00000022187	ENSMAMG00000022183
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652.p	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Carangaria_A	ANCESTRAL SPECIES	38	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325.d	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22
Barramundi perch	MODERN SPECIES	115	ENSLCAG00010010465	ENSLCAG00010010090	ENSLCAG00010009959	zswim2 (ENSLCAG00010009948)	FAM171B (ENSLCAG00010009946)	ENSLCAG00010009938	OSBPL11 (ENSLCAG00010009913)	gpd1c (ENSLCAG00010009903)	NCKAP5 (ENSLCAG00010009890)	LYPD1 (ENSLCAG00010009884)	actr3 (ENSLCAG00010009875)	ENSLCAG00010009867 #19	ENSLCAG00010009865	pou3f3b (ENSLCAG00010009863) #20	mrps9 (ENSLCAG00010009840) #21	SLAIN1 (ENSLCAG00010009828) #22
Seriola	ANCESTRAL SPECIES	47								ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Greater amberjack	MODERN SPECIES	7								OSBPL11 (ENSSDUG00000011051)	gpd1c (ENSSDUG00000011096)	NCKAP5 (ENSSDUG00000011127)	LYPD1 (ENSSDUG00000011164)	actr3 (ENSSDUG00000011172)	ENSSDUG00000011199 #19	pou3f3b (ENSSDUG00000011212) #20	mrps9 (ENSSDUG00000011236) #21	SLAIN1 (ENSSDUG00000011268) #22	zswim2 (ENSSDUG00000011305)	FAM171B (ENSSDUG00000011334)	ENSSDUG00000011349	ENSSDUG00000011373	ENSSDUG00000011421	ENSSDUG00000011435	pwp2h (ENSSDUG00000011462)	eed (ENSSDUG00000011532)	ATP7B (ENSSDUG00000011556)	LRRC3 (ENSSDUG00000011592)	ENSSDUG00000011608	ENSSDUG00000011623	gpd2 (ENSSDUG00000011657)	nr4a2b (ENSSDUG00000011809)	TUBA4A (ENSSDUG00000012063)
Yellowtail amberjack	MODERN SPECIES	3005	erbb4a (ENSSLDG00000005838)	lancl1 (ENSSLDG00000005802)	mylz3 (ENSSLDG00000005770)	acadl (ENSSLDG00000005722)	ENSSLDG00000005658	UNC80 (ENSSLDG00000005477)	gpd1c (ENSSLDG00000005420)	OSBPL11 (ENSSLDG00000005371)	ENSSLDG00000005335	ENSSLDG00000005306	LYPD1 (ENSSLDG00000005291)	actr3 (ENSSLDG00000005231)	ENSSLDG00000005209 #19	pou3f3b (ENSSLDG00000005195) #20	mrps9 (ENSSLDG00000005169) #21	ENSSLDG00000005141 #22	ENSSLDG00000004979	stoml2 (ENSSLDG00000004916)	ENSSLDG00000004890	ENSSLDG00000004843	cbsa (ENSSLDG00000004764)	u2af1 (ENSSLDG00000004576)	ENSSLDG00000004551	zgc:172122 (ENSSLDG00000004531)	ENSSLDG00000004521	ENSSLDG00000004505	ENSSLDG00000004486	ENSSLDG00000004469	gemin8 (ENSSLDG00000004417)	gpm6ba (ENSSLDG00000004387)	rab9a (ENSSLDG00000004352)
Pleuronectoidei	ANCESTRAL SPECIES	47	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652.p	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.yb	ENSGT00390000017581.b.b #19	ENSGT00940000164385.a.a.a.b #20	ENSGT00390000011204 #21	ENSGT00390000017860.a.b.f #22	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d
Tongue sole	MODERN SPECIES	5	MCF2L (ENSCSEG00000003384) #8	arpc2 (ENSCSEG00000003404)	ENSCSEG00000003406	ENSCSEG00000003409	ENSCSEG00000003414	bzw1a (ENSCSEG00000003418)	ENSCSEG00000003428	ENSCSEG00000003432	KYNU (ENSCSEG00000003441)	OSBPL11 (ENSCSEG00000003461)	ENSCSEG00000003472	LYPD1 (ENSCSEG00000003476)	actr3 (ENSCSEG00000003485)	pou3f3b (ENSCSEG00000003499) #20	mrps9 (ENSCSEG00000003508) #21	ENSCSEG00000003510 #22	NSMF (ENSCSEG00000003518)	ENSCSEG00000003532	ENSCSEG00000003544	ADORA2A (ENSCSEG00000003550)	BCR (ENSCSEG00000003567)	atp2a2b (ENSCSEG00000003600)	pus1 (ENSCSEG00000003629)	noc4l (ENSCSEG00000003635)	RIMBP2 (ENSCSEG00000003643)	ENSCSEG00000003654	TMEM132C (ENSCSEG00000003665)	ENSCSEG00000003709	crkl (ENSCSEG00000003721)	si:ch211-222n4.2 (ENSCSEG00000003724)	ULK1 (ENSCSEG00000003734)
Turbot	DUPLICATION
Turbot	MODERN SPECIES		erbb4a (ENSSMAG00000010805)	LANCL1 (ENSSMAG00000010780)	mylz3 (ENSSMAG00000010764)	ACADL (ENSSMAG00000010744)	ENSSMAG00000010026	ENSSMAG00000028385	ENSSMAG00000010077	ENSSMAG00000010137	ENSSMAG00000010164	ENSSMAG00000033279	ENSSMAG00000010624	ENSSMAG00000010680 #19	ENSSMAG00000010693	ENSSMAG00000010706 #20	ENSSMAG00000010712	ENSSMAG00000031472 #22	ENSSMAG00000028603 #22	zswim2 (ENSSMAG00000011667)	ENSSMAG00000011680	ENSSMAG00000011709	ENSSMAG00000030332	ENSSMAG00000011793	ENSSMAG00000011839	ENSSMAG00000011872	ENSSMAG00000011898	ENSSMAG00000011922	ENSSMAG00000011929	ENSSMAG00000029800	ENSSMAG00000011966	ENSSMAG00000022266	ENSSMAG00000012080
Turbot	MODERN SPECIES		LANCL1 (ENSSMAG00000010780)	mylz3 (ENSSMAG00000010764)	ACADL (ENSSMAG00000010744)	ENSSMAG00000010026	ENSSMAG00000028385	ENSSMAG00000010077	ENSSMAG00000010137	ENSSMAG00000010164	ENSSMAG00000033279	ENSSMAG00000010624	ENSSMAG00000010680 #19	ENSSMAG00000010693	ENSSMAG00000010706 #20	ENSSMAG00000010712	ENSSMAG00000031472 #22	ENSSMAG00000028603 #22	zswim2 (ENSSMAG00000011667)	ENSSMAG00000011680	ENSSMAG00000011709	ENSSMAG00000030332	ENSSMAG00000011793	ENSSMAG00000011839	ENSSMAG00000011872	ENSSMAG00000011898	ENSSMAG00000011922	ENSSMAG00000011929	ENSSMAG00000029800	ENSSMAG00000011966	ENSSMAG00000022266	ENSSMAG00000012080	ENSSMAG00000012175
Pinecone sodierfish	MODERN SPECIES	11	lancl1 (ENSMMDG00005000594)	mylz3 (ENSMMDG00005000540)	acadl (ENSMMDG00005000534)	acadl (ENSMMDG00005000529)	ENSMMDG00005000523	UNC80 (ENSMMDG00005000474)	SNX4 (ENSMMDG00005000443)	OSBPL11 (ENSMMDG00005000421)	gpd1c (ENSMMDG00005000403)	NCKAP5 (ENSMMDG00005000392)	LYPD1 (ENSMMDG00005000386)	actr3 (ENSMMDG00005000371)	ENSMMDG00005000359 #19	pou3f3b (ENSMMDG00005000354) #20	mrps9 (ENSMMDG00005000347) #21	SLAIN1 (ENSMMDG00005000336) #22	FAM171B (ENSMMDG00005000328)	zswim2 (ENSMMDG00005000318)	ENSMMDG00005000123	ENSMMDG00005000081	pwp2h (ENSMMDG00005007880)	eed (ENSMMDG00005007873)	ATP7B (ENSMMDG00005007871)	LRRC3 (ENSMMDG00005007869)	ENSMMDG00005007814	ENSMMDG00005007805	gpd2 (ENSMMDG00005007801)	NR4A2 (ENSMMDG00005007659)	ENSMMDG00005007653	ENSMMDG00005007641	ENSMMDG00005007609
Cod	MODERN SPECIES	17	ENSGMOG00000026081	ENSGMOG00000005378	ENSGMOG00000034018	ENSGMOG00000034147	ENSGMOG00000033822	ENSGMOG00000025299	ENSGMOG00000029542	ENSGMOG00000026758	ENSGMOG00000024588	ENSGMOG00000033374	ENSGMOG00000030623	ENSGMOG00000002043	ENSGMOG00000023951 #19	ENSGMOG00000029211 #20	mrps9 (ENSGMOG00000032381) #21	ENSGMOG00000031908 #22	ENSGMOG00000035288	ENSGMOG00000003871	ENSGMOG00000033154	ENSGMOG00000028121	ENSGMOG00000030346	ENSGMOG00000035856	ENSGMOG00000034015	ENSGMOG00000025152	ENSGMOG00000031279	ENSGMOG00000030149	ENSGMOG00000023691	ENSGMOG00000025694	ENSGMOG00000029948	ENSGMOG00000024387	ENSGMOG00000034284