Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00390000000265	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b ##31	ENSGT00390000002770	ENSGT00940000159410 #32	ENSGT00390000000013	ENSGT00940000162571 #34	ENSGT01030000234531.A.b.b.b.f	ENSGT01030000234531.A.b.b.b.e.b
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00390000000265	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000159410 #32	ENSGT00940000170582 #33	ENSGT00390000000013	ENSGT00940000162571 #34	ENSGT01030000234531.A.b.b.b.e.b.c	ENSGT00390000014553	ENSGT00940000162160
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00390000000265	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000159410 #32	ENSGT00940000170582 #33	ENSGT00940000162571 #34	ENSGT00390000014553	ENSGT00940000162160	ENSGT00940000157630.g.b	ENSGT00940000157630.g.a
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00440000039706 #8	ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000159410 #32	ENSGT00940000170582 #33	ENSGT00940000162571 #34
Long-tailed chinchilla	MODERN SPECIES	234	SZRD1 (ENSCLAG00000003038) #7	FBXO42 (ENSCLAG00000002198) #8	CPLANE2 (ENSCLAG00000002302) #9	ARHGEF19 (ENSCLAG00000002678) #10	EPHA2 (ENSCLAG00000003129) #11	FAM131C (ENSCLAG00000004083) #12	ENSCLAG00000004938 #13	HSPB7 (ENSCLAG00000005960) #14	ZBTB17 (ENSCLAG00000006044) #15	SPEN (ENSCLAG00000002018) #16	FBLIM1 (ENSCLAG00000003668) #17	TMEM82 (ENSCLAG00000004347) #18	SLC25A34 (ENSCLAG00000002647) #19	PLEKHM2 (ENSCLAG00000003128) #20	ENSCLAG00000003693 #21	AGMAT (ENSCLAG00000004055) #22	DNAJC16 (ENSCLAG00000002114) #23	CASP9 (ENSCLAG00000003082) #24	ENSCLAG00000010512 #25	CTRC (ENSCLAG00000010834) #26	EFHD2 (ENSCLAG00000014606) #27	FHAD1 (ENSCLAG00000012202) #28	TMEM51 (ENSCLAG00000003533) #29	ENSCLAG00000003684 #30	ENSCLAG00000003967 #31	PRDM2 (ENSCLAG00000004362) #32	ENSCLAG00000002299 #33	LRRC38 (ENSCLAG00000002559) #34
Degu	MODERN SPECIES	133	EPHA2 (ENSODEG00000016363) #11	FAM131C (ENSODEG00000016610) #12	ENSODEG00000016231 #13	HSPB7 (ENSODEG00000016081) #14	ENSODEG00000020349	ENSODEG00000016716	ENSODEG00000020337	ZBTB17 (ENSODEG00000016152) #15	SPEN (ENSODEG00000016644) #16	FBLIM1 (ENSODEG00000016558) #17	TMEM82 (ENSODEG00000016458) #18	SLC25A34 (ENSODEG00000016800) #19	PLEKHM2 (ENSODEG00000016981) #20	RSC1A1 (ENSODEG00000016320) #21	DDI2 (ENSODEG00000016549)	AGMAT (ENSODEG00000016792) #22	DNAJC16 (ENSODEG00000016313) #23	ENSODEG00000016480	ENSODEG00000016581 #25	ENSODEG00000020480	CTRC (ENSODEG00000016340) #26	EFHD2 (ENSODEG00000016306) #27	FHAD1 (ENSODEG00000016605) #28	TMEM51 (ENSODEG00000016454) #29	ENSODEG00000016473 #31	ENSODEG00000016425 #31	PRDM2 (ENSODEG00000017400) #32
Guinea pig	MODERN SPECIES	25	CPLANE2 (ENSCPOG00000040319) #9	ENSCPOG00000019656	EPHA2 (ENSCPOG00000003065) #11	FAM131C (ENSCPOG00000027194) #12	ENSCPOG00000010602 #13	HSPB7 (ENSCPOG00000034311) #14	SRARP (ENSCPOG00000036293)	ZBTB17 (ENSCPOG00000014042) #15	SPEN (ENSCPOG00000014036) #16	FBLIM1 (ENSCPOG00000024867) #17	TMEM82 (ENSCPOG00000012084) #18	SLC25A34 (ENSCPOG00000012078) #19	PLEKHM2 (ENSCPOG00000012069) #20	RSC1A1 (ENSCPOG00000012066) #21	DDI2 (ENSCPOG00000020885)	AGMAT (ENSCPOG00000026931) #22	DNAJC16 (ENSCPOG00000012059) #23	CASP9 (ENSCPOG00000012051) #24	ENSCPOG00000038747 #25	ENSCPOG00000039418 #25	CTRC (ENSCPOG00000034507) #26	EFHD2 (ENSCPOG00000022076) #27	FHAD1 (ENSCPOG00000014449) #28	TMEM51 (ENSCPOG00000035704) #29	ENSCPOG00000035462 #31	ENSCPOG00000007591 #31	PRDM2 (ENSCPOG00000038436) #32	ENSCPOG00000038973 #33	LRRC38 (ENSCPOG00000031681) #34	CFAP107 (ENSCPOG00000003643)	AADACL3 (ENSCPOG00000000228)
Naked mole-rat female	MODERN SPECIES	26	RSG1 (ENSHGLG00000034672) #9	ARHGEF19 (ENSHGLG00000012640) #10	EPHA2 (ENSHGLG00000012989) #11	FAM131C (ENSHGLG00000010221) #12	ENSHGLG00000012896 #13	HSPB7 (ENSHGLG00000035307) #14	ENSHGLG00000010058	ZBTB17 (ENSHGLG00000011895) #15	SPEN (ENSHGLG00000032487) #16	ENSHGLG00000014407	FBLIM1 (ENSHGLG00000019134) #17	TMEM82 (ENSHGLG00000011424) #18	SLC25A34 (ENSHGLG00000032560) #19	PLEKHM2 (ENSHGLG00000007190) #20	ENSHGLG00000038027 #21	AGMAT (ENSHGLG00000007473) #22	DNAJC16 (ENSHGLG00000014574) #23	CASP9 (ENSHGLG00000019310) #24	ENSHGLG00000016895 #25	CTRC (ENSHGLG00000018486) #26	EFHD2 (ENSHGLG00000046486) #27	FHAD1 (ENSHGLG00000018196) #28	TMEM51 (ENSHGLG00000013366) #29	ENSHGLG00000009940 #31	ENSHGLG00000035804	CPT2 (ENSHGLG00000003070)	ENSHGLG00000002034	ENSHGLG00000001648	LRP8 (ENSHGLG00000001818)	ENSHGLG00000041952	NDC1 (ENSHGLG00000001547)
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00390000000265	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b ##31	ENSGT00940000159410 #32	ENSGT00390000000013	ENSGT00940000162571 #34	ENSGT01030000234531.A.b.b.b.f.b.b	ENSGT00390000014553	ENSGT00940000162160
Marmotini	ANCESTRAL SPECIES		ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00390000000265	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b ##31	ENSGT00940000159410 #32	ENSGT00390000000013	ENSGT00940000162571 #34	ENSGT00390000014553	ENSGT00940000162160	ENSGT00940000157630.c
Marmotini_b	ANCESTRAL SPECIES		ENSGT00390000006521 #9	ENSGT01030000234571.b.b.b.a.b #10	ENSGT00940000160786 #11	ENSGT00950000183106.b #12	ENSGT00940000158748 #13	ENSGT00390000010674 #14	ENSGT00390000000265	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000182999.a.a	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b ##31	ENSGT00940000159410 #32	ENSGT00390000000013	ENSGT00940000162571 #34	ENSGT00390000014553	ENSGT00940000162160	ENSGT00940000157630.c
Squirrel	MODERN SPECIES	74	ARHGEF19 (ENSSTOG00000026824) #10	EPHA2 (ENSSTOG00000003080) #11	FAM131C (ENSSTOG00000026095) #12	ENSSTOG00000022083 #13	HSPB7 (ENSSTOG00000028972) #14	SRARP (ENSSTOG00000015599)	ZBTB17 (ENSSTOG00000005696) #15	SPEN (ENSSTOG00000021428) #16	ENSSTOG00000029207	FBLIM1 (ENSSTOG00000028645) #17	TMEM82 (ENSSTOG00000025954) #18	SLC25A34 (ENSSTOG00000013833) #19	PLEKHM2 (ENSSTOG00000013821) #20	RSC1A1 (ENSSTOG00000025982) #21	DDI2 (ENSSTOG00000019447)	AGMAT (ENSSTOG00000013813) #22	DNAJC16 (ENSSTOG00000013804) #23	ENSSTOG00000028042	ENSSTOG00000021532 #25	ENSSTOG00000032931 #26	EFHD2 (ENSSTOG00000025403) #27	FHAD1 (ENSSTOG00000023646) #28	TMEM51 (ENSSTOG00000020167) #29	ENSSTOG00000030433 #31	ENSSTOG00000023112 #31	PRDM2 (ENSSTOG00000019848) #32	PDPN (ENSSTOG00000032629)	LRRC38 (ENSSTOG00000023111) #34	CFAP107 (ENSSTOG00000009816)	AADACL3 (ENSSTOG00000007059)	AADACL4 (ENSSTOG00000019534)
Arctic ground squirrel	MODERN SPECIES	236	FBXO42 (ENSUPAG00010017950) #8	CPLANE2 (ENSUPAG00010017964) #9	ARHGEF19 (ENSUPAG00010017982) #10	EPHA2 (ENSUPAG00010017996) #11	FAM131C (ENSUPAG00010018009) #12	ENSUPAG00010018021 #13	HSPB7 (ENSUPAG00010018035) #14	SRARP (ENSUPAG00010018039)	ZBTB17 (ENSUPAG00010018044) #15	SPEN (ENSUPAG00010018064) #16	FBLIM1 (ENSUPAG00010018076) #17	TMEM82 (ENSUPAG00010018085) #18	SLC25A34 (ENSUPAG00010018099) #19	PLEKHM2 (ENSUPAG00010018117) #20	ENSUPAG00010018182 #21	AGMAT (ENSUPAG00010018210) #22	DNAJC16 (ENSUPAG00010018220) #23	CASP9 (ENSUPAG00010018242) #24	ENSUPAG00010018260 #25
Alpin marmot	MODERN SPECIES	15	ENSMMMG00000021379	CPLANE2 (ENSMMMG00000021380) #9	ARHGEF19 (ENSMMMG00000021384) #10	EPHA2 (ENSMMMG00000021393) #11	FAM131C (ENSMMMG00000021619) #12	ENSMMMG00000021622 #13	HSPB7 (ENSMMMG00000021631) #14	SRARP (ENSMMMG00000021634)	ZBTB17 (ENSMMMG00000021636) #15	ENSMMMG00000021647	FBLIM1 (ENSMMMG00000021649) #17	TMEM82 (ENSMMMG00000021661) #18	SLC25A34 (ENSMMMG00000021668) #19	PLEKHM2 (ENSMMMG00000021689) #20	DDI2 (ENSMMMG00000021707)	AGMAT (ENSMMMG00000021713) #22	DNAJC16 (ENSMMMG00000021719) #23	CASP9 (ENSMMMG00000021730) #24	ENSMMMG00000021744 #25	EFHD2 (ENSMMMG00000021754) #27	FHAD1 (ENSMMMG00000021774) #28	TMEM51 (ENSMMMG00000021802) #29	KAZN (ENSMMMG00000021835) #31	PRDM2 (ENSMMMG00000021858) #32	ENSMMMG00000021882	LRRC38 (ENSMMMG00000021887) #34
Eurasian red squirrel	MODERN SPECIES		CPLANE2 (ENSSVLG00005000646) #9	ARHGEF19 (ENSSVLG00005000627) #10	EPHA2 (ENSSVLG00005000603) #11	FAM131C (ENSSVLG00005000572) #12	ENSSVLG00005000408 #13	HSPB7 (ENSSVLG00005000082) #14	SRARP (ENSSVLG00005010560)	ZBTB17 (ENSSVLG00005010439) #15	SPEN (ENSSVLG00005010400) #16	FBLIM1 (ENSSVLG00005010292) #17	TMEM82 (ENSSVLG00005010237) #18	SLC25A34 (ENSSVLG00005010194) #19	PLEKHM2 (ENSSVLG00005010150) #20	RSC1A1 (ENSSVLG00005010092) #21	DDI2 (ENSSVLG00005010074)	AGMAT (ENSSVLG00005010003) #22	ENSSVLG00005009978	DNAJC16 (ENSSVLG00005009925) #23	ENSSVLG00005009886	ENSSVLG00005009810 #25	ENSSVLG00005009617 #25	CTRC (ENSSVLG00005009531) #26	EFHD2 (ENSSVLG00005009504) #27	FHAD1 (ENSSVLG00005009255) #28	TMEM51 (ENSSVLG00005009207) #29	KAZN (ENSSVLG00005008929) #31	PRDM2 (ENSSVLG00005008674) #32	PDPN (ENSSVLG00005008527)	LRRC38 (ENSSVLG00005008488) #34	ENSSVLG00005008079	CFAP107 (ENSSVLG00005007956)