Murinae	ANCESTRAL SPECIES	2	ENSGT00390000006521 #7	ENSGT01030000234571.b.b.b.a.b #8	ENSGT00940000160786 #9	ENSGT00950000183106.b #10	ENSGT00940000158748.f #11	ENSGT00940000158748.e #12	ENSGT00390000010674 #13	ENSGT00390000000265 #14	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b #32	ENSGT00390000002770	ENSGT00940000159410 #33	ENSGT00390000000013 #35	ENSGT00940000162571 #36	ENSGT01030000234531.A.b.b.b.e.a.b.b #37	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##37
Mus	ANCESTRAL SPECIES	3	ENSGT00390000006521 #7	ENSGT01030000234571.b.b.b.a.b #8	ENSGT00940000160786 #9	ENSGT00950000183106.b #10	ENSGT00940000158748.f #11	ENSGT00940000158748.e #12	ENSGT00390000010674 #13	ENSGT00390000000265 #14	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b #32	ENSGT00390000002770	ENSGT00940000159410 #33	ENSGT00390000000013 #35	ENSGT00940000162571 #36	ENSGT01030000234531.A.b.b.b.e.a.b.b #37	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000006521 #7	ENSGT01030000234571.b.b.b.a.b #8	ENSGT00940000160786 #9	ENSGT00950000183106.b #10	ENSGT00940000158748.f #11	ENSGT00940000158748.e #12	ENSGT00390000010674 #13	ENSGT00390000000265 #14	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b #32	ENSGT00390000002770	ENSGT00940000159410 #33	ENSGT00390000000013 #35	ENSGT00940000162571 #36	ENSGT01030000234531.A.b.b.b.e.a.b.b #37	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000006521 #7	ENSGT01030000234571.b.b.b.a.b #8	ENSGT00940000160786 #9	ENSGT00950000183106.b #10	ENSGT00940000158748.f #11	ENSGT00940000158748.e #12	ENSGT00390000010674 #13	ENSGT00390000000265 #14	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b #32	ENSGT00390000002770	ENSGT00940000159410 #33	ENSGT00390000000013 #35	ENSGT00940000162571 #36	ENSGT01030000234531.A.b.b.b.e.a.b.b #37	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000006521 #7	ENSGT01030000234571.b.b.b.a.b #8	ENSGT00940000160786 #9	ENSGT00950000183106.b #10	ENSGT00940000158748.f #11	ENSGT00940000158748.e #12	ENSGT00390000010674 #13	ENSGT00390000000265 #14	ENSGT00940000159957 #15	ENSGT00940000157087.a.b #16	ENSGT00940000159003 #17	ENSGT00500000045021 #18	ENSGT00940000160016 #19	ENSGT00390000015175 #20	ENSGT00390000005744 #21	ENSGT00950000183195.a #22	ENSGT00940000155851 #23	ENSGT00940000159698 #24	ENSGT01030000234528.B.a.a #25	ENSGT00940000153216.a.b #26	ENSGT00390000012058.c.b #27	ENSGT00940000154171.A #28	ENSGT00390000009278 #29	ENSGT00940000154570.b #31	ENSGT00940000154570.a.b #32	ENSGT00940000159410 #33	ENSGT00390000000013 #35	ENSGT00940000162571 #36	ENSGT01030000234531.A.b.b.b.e.a.b.b #37	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##37	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##37
Steppe mouse	MODERN SPECIES	3329	Cplane2 (ENSMSIG00000013945) #7	Arhgef19 (ENSMSIG00000013963) #8	Epha2 (ENSMSIG00000014018) #9	Fam131c (ENSMSIG00000014039) #10	Clcnka (ENSMSIG00000014055) #11	Clcnkb (ENSMSIG00000014099) #12	Hspb7 (ENSMSIG00000014140) #13	Srarp (ENSMSIG00000014155) #14	Zbtb17 (ENSMSIG00000014168) #15	Spen (ENSMSIG00000014208) #16	Fblim1 (ENSMSIG00000014313) #17	Tmem82 (ENSMSIG00000014350) #18	Slc25a34 (ENSMSIG00000014377) #19	Plekhm2 (ENSMSIG00000014394) #20	ENSMSIG00000014561 #21	Agmat (ENSMSIG00000014614) #22	Dnajc16 (ENSMSIG00000014635) #23	Casp9 (ENSMSIG00000014653) #24	Cela2a (ENSMSIG00000014686) #25	ENSMSIG00000014707 #26	Efhd2 (ENSMSIG00000014750) #27	Fhad1 (ENSMSIG00000014775) #28	Tmem51 (ENSMSIG00000015190) #29	ENSMSIG00000015199 #30	Kazn (ENSMSIG00000015206) #31	ENSMSIG00000015235 #32	Prdm2 (ENSMSIG00000015257) #33	ENSMSIG00000015307 #34	Pdpn (ENSMSIG00000015317) #35	ENSMSIG00000015393 #36	Pramel1 (ENSMSIG00000015411) #37
spretus	MODERN SPECIES	13	Cplane2 (MGP_SPRETEiJ_G0027716) #7	Arhgef19 (MGP_SPRETEiJ_G0027717) #8	Epha2 (MGP_SPRETEiJ_G0027718) #9	Fam131c (MGP_SPRETEiJ_G0027719) #10	Clcnka (MGP_SPRETEiJ_G0027720) #11	Clcnkb (MGP_SPRETEiJ_G0027721) #12	Hspb7 (MGP_SPRETEiJ_G0027722) #13	Zbtb17 (MGP_SPRETEiJ_G0027723) #15	Spen (MGP_SPRETEiJ_G0027724) #16	Fblim1 (MGP_SPRETEiJ_G0027725) #17	Tmem82 (MGP_SPRETEiJ_G0027726) #18	Slc25a34 (MGP_SPRETEiJ_G0027727) #19	Plekhm2 (MGP_SPRETEiJ_G0027728) #20	MGP_SPRETEiJ_G0027729 #21	MGP_SPRETEiJ_G0027730 #21	Agmat (MGP_SPRETEiJ_G0027731) #22	Dnajc16 (MGP_SPRETEiJ_G0027732) #23	Casp9 (MGP_SPRETEiJ_G0027733) #24	Cela2a (MGP_SPRETEiJ_G0027734) #25	MGP_SPRETEiJ_G0027735	Efhd2 (MGP_SPRETEiJ_G0027736) #27	Fhad1 (MGP_SPRETEiJ_G0027737) #28	Tmem51 (MGP_SPRETEiJ_G0027738) #29	Kazn (MGP_SPRETEiJ_G0027739) #31	Prdm2 (MGP_SPRETEiJ_G0027740) #33	Pdpn (MGP_SPRETEiJ_G0027741) #35	Lrrc38 (MGP_SPRETEiJ_G0027742) #36	Pramel1 (MGP_SPRETEiJ_G0027743) #37	Pramel12 (MGP_SPRETEiJ_G0027744) ##37	Oog4 (MGP_SPRETEiJ_G0027745) ##37	MGP_SPRETEiJ_G0027746 ##37
Mouse	MODERN SPECIES	13	Arhgef19 (ENSMUSG00000028919) #8	Epha2 (ENSMUSG00000006445) #9	Fam131c (ENSMUSG00000006218) #10	Clcnka (ENSMUSG00000033770) #11	Clcnkb (ENSMUSG00000006216) #12	Hspb7 (ENSMUSG00000006221) #13	Srarp (ENSMUSG00000070637) #14	Zbtb17 (ENSMUSG00000006215) #15	Spen (ENSMUSG00000040761) #16	Fblim1 (ENSMUSG00000006219) #17	Tmem82 (ENSMUSG00000043085) #18	Slc25a34 (ENSMUSG00000040740) #19	Plekhm2 (ENSMUSG00000028917) #20	Ddi2 (ENSMUSG00000078515) #21	Rsc1a1 (ENSMUSG00000040715) #21	Agmat (ENSMUSG00000040706) #22	Dnajc16 (ENSMUSG00000040697) #23	Casp9 (ENSMUSG00000028914) #24	Cela2a (ENSMUSG00000058579) #25	Ctrc (ENSMUSG00000062478)	Efhd2 (ENSMUSG00000040659) #27	Fhad1 (ENSMUSG00000051435) #28	Tmem51 (ENSMUSG00000040616) #29	Kazn (ENSMUSG00000040606) #31	6330411D24Rik (ENSMUSG00000110067)	Prdm2 (ENSMUSG00000057637) #33	Pdpn (ENSMUSG00000028583) #35	Lrrc38 (ENSMUSG00000028584) #36	Pramel1 (ENSMUSG00000041805) #37	Pramel12 (ENSMUSG00000046862) ##37	Oog4 (ENSMUSG00000047799) ##37
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026737	Epha2 (MGP_CAROLIEiJ_G0026738) #9	Fam131c (MGP_CAROLIEiJ_G0026739) #10	Clcnka (MGP_CAROLIEiJ_G0026740) #11	Clcnkb (MGP_CAROLIEiJ_G0026741) #12	Hspb7 (MGP_CAROLIEiJ_G0026742) #13	Srarp (MGP_CAROLIEiJ_G0026743) #14	Zbtb17 (MGP_CAROLIEiJ_G0026744) #15	Spen (MGP_CAROLIEiJ_G0026745) #16	Fblim1 (MGP_CAROLIEiJ_G0026746) #17	Tmem82 (MGP_CAROLIEiJ_G0026747) #18	Slc25a34 (MGP_CAROLIEiJ_G0026748) #19	Plekhm2 (MGP_CAROLIEiJ_G0026749) #20	MGP_CAROLIEiJ_G0026750 #21	MGP_CAROLIEiJ_G0026751 #21	Agmat (MGP_CAROLIEiJ_G0026752) #22	Dnajc16 (MGP_CAROLIEiJ_G0026753) #23	MGP_CAROLIEiJ_G0026754 #24	MGP_CAROLIEiJ_G0026755	Efhd2 (MGP_CAROLIEiJ_G0026756) #27	Fhad1 (MGP_CAROLIEiJ_G0026757) #28	Tmem51 (MGP_CAROLIEiJ_G0026758) #29	Kazn (MGP_CAROLIEiJ_G0026759) #31	Prdm2 (MGP_CAROLIEiJ_G0026760) #33	Pdpn (MGP_CAROLIEiJ_G0026761) #35	Lrrc38 (MGP_CAROLIEiJ_G0026762) #36	Pramel1 (MGP_CAROLIEiJ_G0026763) #37	Pramel12 (MGP_CAROLIEiJ_G0026764) ##37	Oog4 (MGP_CAROLIEiJ_G0026765) ##37	MGP_CAROLIEiJ_G0026766 ##37	MGP_CAROLIEiJ_G0026767 ##37
Shrew mouse	MODERN SPECIES	19	MGP_PahariEiJ_G0029068	Epha2 (MGP_PahariEiJ_G0029069) #9	Fam131c (MGP_PahariEiJ_G0029070) #10	Clcnka (MGP_PahariEiJ_G0029071) #11	Clcnkb (MGP_PahariEiJ_G0029072) #12	Hspb7 (MGP_PahariEiJ_G0029073) #13	MGP_PahariEiJ_G0029074 #14	Zbtb17 (MGP_PahariEiJ_G0029075) #15	Spen (MGP_PahariEiJ_G0029076) #16	Fblim1 (MGP_PahariEiJ_G0029077) #17	Tmem82 (MGP_PahariEiJ_G0029078) #18	Slc25a34 (MGP_PahariEiJ_G0029079) #19	Plekhm2 (MGP_PahariEiJ_G0029080) #20	MGP_PahariEiJ_G0029081 #21	MGP_PahariEiJ_G0029082 #21	Agmat (MGP_PahariEiJ_G0029083) #22	Dnajc16 (MGP_PahariEiJ_G0029084) #23	Casp9 (MGP_PahariEiJ_G0029085) #24	Cela2a (MGP_PahariEiJ_G0029086) #25	MGP_PahariEiJ_G0029087	Efhd2 (MGP_PahariEiJ_G0029088) #27	Fhad1 (MGP_PahariEiJ_G0029089) #28	Tmem51 (MGP_PahariEiJ_G0029090) #29	Kazn (MGP_PahariEiJ_G0029091) #31	Prdm2 (MGP_PahariEiJ_G0029092) #33	Pdpn (MGP_PahariEiJ_G0029093) #35	Lrrc38 (MGP_PahariEiJ_G0029094) #36	Pramel1 (MGP_PahariEiJ_G0029095) #37	Pramel12 (MGP_PahariEiJ_G0029096) ##37	MGP_PahariEiJ_G0029097 ##37	MGP_PahariEiJ_G0029098 ##37
Rat	MODERN SPECIES	15	Cplane2 (ENSRNOG00000023346) #7	Arhgef19 (ENSRNOG00000047967) #8	Epha2 (ENSRNOG00000009222) #9	Rps27a-ps2 (ENSRNOG00000051047)	Fam131c (ENSRNOG00000023008) #10	Clcnka (ENSRNOG00000052368) #11	Clcnkb (ENSRNOG00000009897) #12	Hspb7 (ENSRNOG00000029079) #13	AC120594.1 (ENSRNOG00000054155) #14	Zbtb17 (ENSRNOG00000010436) #15	Spen (ENSRNOG00000033556) #16	Fblim1 (ENSRNOG00000011774) #17	Tmem82 (ENSRNOG00000011970) #18	Plekhm2 (ENSRNOG00000012163) #20	Ddi2 (ENSRNOG00000012274) #21	Agmat (ENSRNOG00000012315) #22	Dnajc16 (ENSRNOG00000012503) #23	Casp9 (ENSRNOG00000012944) #24	Cela2a (ENSRNOG00000013628) #25	Ctrc (ENSRNOG00000013745) #26	Efhd2 (ENSRNOG00000013783) #27	Fhad1 (ENSRNOG00000028064) #28	Tmem51 (ENSRNOG00000014197) #29	ENSRNOG00000070661	Kazn (ENSRNOG00000014322) #31	6330411D24Rik (ENSRNOG00000065736)	Prdm2 (ENSRNOG00000033522) #33	LOC100359951 (ENSRNOG00000071148)	ENSRNOG00000070725	Pdpn (ENSRNOG00000014961) #35	Lrrc38 (ENSRNOG00000015264) #36