Gnathostomata DUPLICATION Gnathostomata ANCESTRAL SPECIES 172 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b ENSGT00950000182960.a.a ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 Euteleostomi ANCESTRAL SPECIES 77 ENSGT00390000004836 ENSGT00960000186809 ENSGT00940000159664 ENSGT00940000164958 ENSGT00940000155556.c ENSGT00940000157100 ENSGT01050000244814.a.b ENSGT01080000257338.A.b ENSGT00940000158127 ENSGT00940000159441 ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000156268.a.a ENSGT00940000161336 ENSGT00390000004323.b ENSGT00390000014667 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00730000111191 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00940000156854 ENSGT00940000168310 ENSGT00940000154322.C ENSGT00940000176040 Sarcopterygii ANCESTRAL SPECIES 76 ENSGT00390000017592 ENSGT00940000159293 ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00950000182960.a.a.a.a ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A Tetrapoda ANCESTRAL SPECIES 75 ENSGT00390000017592 ENSGT00940000159293 ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A Amniota ANCESTRAL SPECIES 11 ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00390000013965 ENSGT01090000260051.b.a.b ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Mammalia ANCESTRAL SPECIES 11 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Theria ANCESTRAL SPECIES 10 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Eutheria ANCESTRAL SPECIES 22 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT01090000260018.B.b Boreoeutheria ANCESTRAL SPECIES 12 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j #34 Euarchontoglires ANCESTRAL SPECIES 12 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j #34 ENSGT01090000260018.B.b Euarchontoglires_A ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j #34 ENSGT01090000260018.B.b ENSGT00940000163330 Glires ANCESTRAL SPECIES 11 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a #34 ENSGT01090000260018.B.b ENSGT00940000163330 Rodentia ANCESTRAL SPECIES 11 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a Rodentia_B ANCESTRAL SPECIES 29 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT00950000182958.a.b.b.j.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a Myomorpha ANCESTRAL SPECIES 31 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00950000182958.a.b.b.j.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 Muroidea ANCESTRAL SPECIES 51 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 Upper Galilee mountains blind mole rat MODERN SPECIES 1850 Rsph10b (ENSNGAG00000023731) #7 Ccz1 (ENSNGAG00000004053) #8 Ocm (ENSNGAG00000008617) #9 Lmtk2 (ENSNGAG00000012019) #10 Bhlha15 (ENSNGAG00000011836) #11 Tecpr1 (ENSNGAG00000013589) #12 Bri3 (ENSNGAG00000013902) #13 Baiap2l1 (ENSNGAG00000018325) #14 ENSNGAG00000014139 #15 Nptx2 (ENSNGAG00000013356) #16 Tmem130 (ENSNGAG00000017786) #17 Trrap (ENSNGAG00000022892) #18 Smurf1 (ENSNGAG00000008962) #19 Kpna7 (ENSNGAG00000021193) #20 ENSNGAG00000018383 #21 Arpc1b (ENSNGAG00000015329) #22 Pdap1 (ENSNGAG00000017370) #23 ENSNGAG00000002694 #24 ENSNGAG00000015871 #25 Cpsf4 (ENSNGAG00000001567) #26 ENSNGAG00000018916 #27 Zkscan14 (ENSNGAG00000023424) #28 ENSNGAG00000023612 #29 Zkscan5 (ENSNGAG00000017855) #30 Zfp655 (ENSNGAG00000008217) #31 Zscan25 (ENSNGAG00000021657) #32 ENSNGAG00000010294 #33 ENSNGAG00000000778 #34 Muroidea_A ANCESTRAL SPECIES 27 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a Cricetidae ANCESTRAL SPECIES 27 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j.a ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a Cricetinae ANCESTRAL SPECIES 19 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00950000182958.a.b.b.j.a.a.a.b.b #33 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b.a #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j.a ENSGT00940000157104 ENSGT00950000182962.a.a Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 130 Ccz1 (ENSCGRG00001021911) #8 Ocm (ENSCGRG00001020230) #9 Lmtk2 (ENSCGRG00001005742) #10 Bhlha15 (ENSCGRG00001003090) #11 Tecpr1 (ENSCGRG00001010075) #12 Bri3 (ENSCGRG00001003030) #13 Baiap2l1 (ENSCGRG00001018597) #14 ENSCGRG00001012810 Nptx2 (ENSCGRG00001001038) #16 Tmem130 (ENSCGRG00001017171) #17 ENSCGRG00001014941 Trrap (ENSCGRG00001015326) #18 Smurf1 (ENSCGRG00001020132) #19 Kpna7 (ENSCGRG00001007501) #20 ENSCGRG00001021831 #21 ENSCGRG00001021035 #22 Pdap1 (ENSCGRG00001016829) #23 Bud31 (ENSCGRG00001012044) #24 Ptcd1 (ENSCGRG00001023686) Cpsf4 (ENSCGRG00001024184) #26 Atp5j2 (ENSCGRG00001016065) #27 Zkscan14 (ENSCGRG00001014948) #28 Zkscan5 (ENSCGRG00001021752) #30 Zfp655 (ENSCGRG00001016484) #31 ENSCGRG00001019977 #33 Zscan25 (ENSCGRG00001017680) #32 ENSCGRG00001010181 #33 ENSCGRG00001023511 #34 ENSCGRG00001020483 Rnf6 (ENSCGRG00001010459) Cdk8 (ENSCGRG00001010747) Chinese hamster chok1gshd MODERN SPECIES 101 Asb7 (ENSCGRG00001013196) Lins1 (ENSCGRG00001016676) Cers3 (ENSCGRG00001019177) Adamts17 (ENSCGRG00001015416) Lysmd4 (ENSCGRG00001023024) Mef2a (ENSCGRG00001010696) Lrrc28 (ENSCGRG00001005872) Ttc23 (ENSCGRG00001014885) Synm (ENSCGRG00001009711) Igf1r (ENSCGRG00001024468) Pgpep1l (ENSCGRG00001013682) Fam169b (ENSCGRG00001013956) Arrdc4 (ENSCGRG00001021034) ENSCGRG00001022756 Nr2f2 (ENSCGRG00001011537) ENSCGRG00001008245 #22 Mctp2 (ENSCGRG00001021616) ENSCGRG00001006608 Rgma (ENSCGRG00001019932) Chd2 (ENSCGRG00001006649) Fam174b (ENSCGRG00001018170) St8sia2 (ENSCGRG00001018925) Slco3a1 (ENSCGRG00001017955) Sv2b (ENSCGRG00001019863) ENSCGRG00001024289 ENSCGRG00001000354 ENSCGRG00001008980 Akap13 (ENSCGRG00001014312) Klhl25 (ENSCGRG00001012399) Agbl1 (ENSCGRG00001015401) Ntrk3 (ENSCGRG00001021632) Chinese hamster chok1gshd MODERN SPECIES 16 4933403O08Rik (ENSCGRG00001018687) ENSCGRG00001000206 ENSCGRG00001000138 2010106E10Rik (ENSCGRG00001018464) Zfp711 (ENSCGRG00001010150) Pof1b (ENSCGRG00001015632) Chm (ENSCGRG00001006793) Tpm3-rs7 (ENSCGRG00001006979) Dach2 (ENSCGRG00001023530) ENSCGRG00001006882 Klhl4 (ENSCGRG00001016767) ENSCGRG00001004881 ENSCGRG00001010570 ENSCGRG00001003703 ENSCGRG00001006460 ENSCGRG00001009434 #22 Diaph2 (ENSCGRG00001018454) ENSCGRG00001023968 ENSCGRG00001022345 Pcdh19 (ENSCGRG00001014584) Tnmd (ENSCGRG00001002116) Tspan6 (ENSCGRG00001023806) Srpx2 (ENSCGRG00001015475) Sytl4 (ENSCGRG00001016125) Cstf2 (ENSCGRG00001023023) Nox1 (ENSCGRG00001023137) Xkrx (ENSCGRG00001019171) Arl13a (ENSCGRG00001021947) Trmt2b (ENSCGRG00001021883) Tmem35a (ENSCGRG00001000179) Cenpi (ENSCGRG00001018101) Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 712 ENSMAUG00000014015 ENSMAUG00000011345 #7 Ccz1 (ENSMAUG00000004705) #8 Ocm (ENSMAUG00000016041) #9 Lmtk2 (ENSMAUG00000014353) #10 Tecpr1 (ENSMAUG00000008072) #12 Bri3 (ENSMAUG00000000701) #13 Baiap2l1 (ENSMAUG00000008280) #14 Nptx2 (ENSMAUG00000017629) #16 ENSMAUG00000000660 Tmem130 (ENSMAUG00000020273) #17 Trrap (ENSMAUG00000015855) #18 Smurf1 (ENSMAUG00000000511) #19 Kpna7 (ENSMAUG00000019165) #20 ENSMAUG00000014235 #21 ENSMAUG00000003299 #22 Pdap1 (ENSMAUG00000011742) #23 Bud31 (ENSMAUG00000016405) #24 ENSMAUG00000011008 Cpsf4 (ENSMAUG00000021253) #26 Atp5j2 (ENSMAUG00000018419) #27 Zkscan5 (ENSMAUG00000014532) #30 Zscan25 (ENSMAUG00000012364) #32 ENSMAUG00000013270 #33 ENSMAUG00000011782 #34 Rnf6 (ENSMAUG00000014438) ENSMAUG00000013390 Wasf3 (ENSMAUG00000004464) Golden Hamster MODERN SPECIES 689 Efnb2 (ENSMAUG00000001276) Slc10a2 (ENSMAUG00000011194) Shcbp1 (ENSMAUG00000019669) Rrn3 (ENSMAUG00000011506) Ntan1 (ENSMAUG00000010841) Pdxdc1 (ENSMAUG00000010809) Mpv17l (ENSMAUG00000003589) ENSMAUG00000014370 Marf1 (ENSMAUG00000018205) ENSMAUG00000019358 ENSMAUG00000008568 Myh11 (ENSMAUG00000020559) Cep20 (ENSMAUG00000011902) ENSMAUG00000006717 Abcc1 (ENSMAUG00000021635) ENSMAUG00000014105 #22 Flnb (ENSMAUG00000013744) Gm45521 (ENSMAUG00000001771) Dnase1l3 (ENSMAUG00000011466) Abhd6 (ENSMAUG00000010276) ENSMAUG00000017489 Rpp14 (ENSMAUG00000022082) Pxk (ENSMAUG00000011206) Pdhb (ENSMAUG00000004888) ENSMAUG00000009900 Lrrc8b (ENSMAUG00000000978) Lrrc8c (ENSMAUG00000007752) Lrrc8d (ENSMAUG00000012239) Zfp326 (ENSMAUG00000020840) Barhl2 (ENSMAUG00000013573) ENSMAUG00000016699 Cricetidae_B ANCESTRAL SPECIES 46 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 Northern American deer mouse MODERN SPECIES 15 Rsph10b (ENSPEMG00000017010) #7 Ccz1 (ENSPEMG00000007600) #8 Ocm (ENSPEMG00000023404) #9 Lmtk2 (ENSPEMG00000002227) #10 Bhlha15 (ENSPEMG00000009777) #11 Tecpr1 (ENSPEMG00000002374) #12 Bri3 (ENSPEMG00000009259) #13 Baiap2l1 (ENSPEMG00000016921) #14 Nptx2 (ENSPEMG00000004530) #16 ENSPEMG00000030777 Tmem130 (ENSPEMG00000017312) #17 Trrap (ENSPEMG00000007905) #18 Smurf1 (ENSPEMG00000004784) #19 Kpna7 (ENSPEMG00000017218) #20 Arpc1a (ENSPEMG00000013996) #21 Arpc1b (ENSPEMG00000017147) #22 ENSPEMG00000015747 #23 Bud31 (ENSPEMG00000010947) #24 Ptcd1 (ENSPEMG00000013736) Cpsf4 (ENSPEMG00000004508) #26 Atp5j2 (ENSPEMG00000013672) #27 Zkscan14 (ENSPEMG00000011797) #28 Zkscan5 (ENSPEMG00000010963) #30 ENSPEMG00000011222 ENSPEMG00000030363 ENSPEMG00000029204 #33 ENSPEMG00000031372 ENSPEMG00000026224 #33 Rxfp2 (ENSPEMG00000018554) B3glct (ENSPEMG00000015898) ENSPEMG00000025164 Prairie vole MODERN SPECIES 110 Aimp2 (ENSMOCG00000014024) ENSMOCG00000010177 Rsph10b (ENSMOCG00000018506) #7 Ccz1 (ENSMOCG00000018777) #8 Ocm (ENSMOCG00000005057) #9 Lmtk2 (ENSMOCG00000019505) #10 Tecpr1 (ENSMOCG00000021771) #12 Bri3 (ENSMOCG00000007653) #13 Baiap2l1 (ENSMOCG00000002763) #14 Nptx2 (ENSMOCG00000011501) #16 Tmem130 (ENSMOCG00000015764) #17 Trrap (ENSMOCG00000000272) #18 Smurf1 (ENSMOCG00000010176) #19 Kpna7 (ENSMOCG00000012853) #20 Arpc1a (ENSMOCG00000020844) #21 Arpc1b (ENSMOCG00000010471) #22 Pdap1 (ENSMOCG00000015800) #23 Zfp655 (ENSMOCG00000019962) #31 Zkscan5 (ENSMOCG00000011909) #30 Atp5j2 (ENSMOCG00000003786) #27 Cpsf4 (ENSMOCG00000014901) #26 ENSMOCG00000016192 Bud31 (ENSMOCG00000017115) #24 Murinae ANCESTRAL SPECIES 28 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a Mus ANCESTRAL SPECIES 17 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #34 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c #34 ENSGT00940000158530.j ENSGT00940000157104 Mus_A DUPLICATION Mus_A ANCESTRAL SPECIES 6 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000156012.q ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.w #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #34 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c #34 ENSGT00940000158530.j ENSGT00940000157104 Mus_B ANCESTRAL SPECIES 4 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000156012.q ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.w #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #34 ENSGT00950000182958.a.b.b.j.a.a.a.b.j #33 ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a #34 ENSGT00940000158530.j ENSGT00940000157104 Mus_C ANCESTRAL SPECIES 4 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000156012.q ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.w #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00940000155423.e.b ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h Steppe mouse MODERN SPECIES 3370 Ocm (ENSMSIG00000029288) #9 Lmtk2 (ENSMSIG00000029281) #10 Bhlha15 (ENSMSIG00000029278) #11 Tecpr1 (ENSMSIG00000029264) #12 ENSMSIG00000029259 Baiap2l1 (ENSMSIG00000029242) #14 ENSMSIG00000029239 Nptx2 (ENSMSIG00000029233) #16 Tmem130 (ENSMSIG00000029228) #17 Trrap (ENSMSIG00000029078) #18 Smurf1 (ENSMSIG00000029028) #19 ENSMSIG00000029026 #20 ENSMSIG00000029019 Arpc1a (ENSMSIG00000029008) #21 ENSMSIG00000029006 Arpc1b (ENSMSIG00000028992) #22 Pdap1 (ENSMSIG00000028982) #23 Bud31 (ENSMSIG00000028973) #24 Ptcd1 (ENSMSIG00000028962) Cpsf4 (ENSMSIG00000028934) #26 Atp5j2 (ENSMSIG00000028928) #27 ENSMSIG00000028921 #28 Zkscan5 (ENSMSIG00000028906) #30 Zscan25 (ENSMSIG00000028875) #32 spretus MODERN SPECIES 14 MGP_SPRETEiJ_G0028994 Rsph10b (MGP_SPRETEiJ_G0028995) #7 Ccz1 (MGP_SPRETEiJ_G0028996) #8 Ocm (MGP_SPRETEiJ_G0028997) #9 Lmtk2 (MGP_SPRETEiJ_G0028998) #10 Bhlha15 (MGP_SPRETEiJ_G0028999) #11 Tecpr1 (MGP_SPRETEiJ_G0029000) #12 Bri3 (MGP_SPRETEiJ_G0029001) #13 Baiap2l1 (MGP_SPRETEiJ_G0029002) #14 Nptx2 (MGP_SPRETEiJ_G0029003) #16 Tmem130 (MGP_SPRETEiJ_G0029004) #17 Trrap (MGP_SPRETEiJ_G0029005) #18 Smurf1 (MGP_SPRETEiJ_G0029006) #19 Kpna7 (MGP_SPRETEiJ_G0029007) #20 Arpc1a (MGP_SPRETEiJ_G0029008) #21 MGP_SPRETEiJ_G0029009 #22 Pdap1 (MGP_SPRETEiJ_G0029010) #23 Bud31 (MGP_SPRETEiJ_G0029011) #24 Ptcd1 (MGP_SPRETEiJ_G0029012) Cpsf4 (MGP_SPRETEiJ_G0029013) #26 Atp5j2 (MGP_SPRETEiJ_G0029014) #27 Zkscan14 (MGP_SPRETEiJ_G0029015) #28 Zkscan5 (MGP_SPRETEiJ_G0029016) #30 Zfp655 (MGP_SPRETEiJ_G0029017) #31 Zscan25 (MGP_SPRETEiJ_G0029018) #32 MGP_SPRETEiJ_G0029019 #34 MGP_SPRETEiJ_G0029020 #34 MGP_SPRETEiJ_G0029021 #34 Rnf6 (MGP_SPRETEiJ_G0029022) Cdk8 (MGP_SPRETEiJ_G0029023) Wasf3 (MGP_SPRETEiJ_G0029024) Mouse MODERN SPECIES 14 Ccz1 (ENSMUSG00000029617) #8 Ocm (ENSMUSG00000029618) #9 Lmtk2 (ENSMUSG00000038970) #10 Bhlha15 (ENSMUSG00000052271) #11 Tecpr1 (ENSMUSG00000066621) #12 Bri3 (ENSMUSG00000047843) #13 Baiap2l1 (ENSMUSG00000038859) #14 Nptx2 (ENSMUSG00000059991) #16 Tmem130 (ENSMUSG00000043388) #17 Trrap (ENSMUSG00000045482) #18 Smurf1 (ENSMUSG00000038780) #19 Kpna7 (ENSMUSG00000038770) #20 Gm4871 (ENSMUSG00000061707) 1700018F24Rik (ENSMUSG00000029620) Arpc1a (ENSMUSG00000029621) #21 Arpc1b (ENSMUSG00000029622) #22 Pdap1 (ENSMUSG00000029623) #23 Bud31 (ENSMUSG00000038722) #24 Ptcd1 (ENSMUSG00000029624) Cpsf4 (ENSMUSG00000029625) #26 Atp5j2 (ENSMUSG00000038690) #27 Zkscan14 (ENSMUSG00000029627) #28 Zkscan5 (ENSMUSG00000055991) #30 Zfp655 (ENSMUSG00000007812) #31 Zscan25 (ENSMUSG00000070420) #32 Cyp3a57 (ENSMUSG00000070419) #34 Cyp3a16 (ENSMUSG00000038656) #33 Cyp3a41b (ENSMUSG00000075552) #33 Cyp3a41a (ENSMUSG00000075551) #33 Cyp3a44 (ENSMUSG00000054417) #33 Cyp3a11 (ENSMUSG00000056035) #33 Ryukyu mouse MODERN SPECIES 14 Fpr-rs3 (MGP_CAROLIEiJ_G0027993) Ocm (MGP_CAROLIEiJ_G0027994) #9 Lmtk2 (MGP_CAROLIEiJ_G0027995) #10 Bhlha15 (MGP_CAROLIEiJ_G0027996) #11 Tecpr1 (MGP_CAROLIEiJ_G0027997) #12 Bri3 (MGP_CAROLIEiJ_G0027998) #13 Baiap2l1 (MGP_CAROLIEiJ_G0027999) #14 Nptx2 (MGP_CAROLIEiJ_G0028000) #16 Tmem130 (MGP_CAROLIEiJ_G0028001) #17 Trrap (MGP_CAROLIEiJ_G0028002) #18 Smurf1 (MGP_CAROLIEiJ_G0028003) #19 Kpna7 (MGP_CAROLIEiJ_G0028004) #20 MGP_CAROLIEiJ_G0028005 MGP_CAROLIEiJ_G0028006 Arpc1a (MGP_CAROLIEiJ_G0028007) #21 Arpc1b (MGP_CAROLIEiJ_G0028008) #22 Pdap1 (MGP_CAROLIEiJ_G0028009) #23 Bud31 (MGP_CAROLIEiJ_G0028010) #24 Ptcd1 (MGP_CAROLIEiJ_G0028011) Cpsf4 (MGP_CAROLIEiJ_G0028012) #26 Atp5j2 (MGP_CAROLIEiJ_G0028013) #27 Zkscan14 (MGP_CAROLIEiJ_G0028014) #28 Zkscan5 (MGP_CAROLIEiJ_G0028015) #30 Zfp655 (MGP_CAROLIEiJ_G0028016) #31 MGP_CAROLIEiJ_G0028017 #32 MGP_CAROLIEiJ_G0028018 ##34 MGP_CAROLIEiJ_G0028020 MGP_CAROLIEiJ_G0028022 MGP_CAROLIEiJ_G0028021 MGP_CAROLIEiJ_G0028023 Rnf6 (MGP_CAROLIEiJ_G0028024) Mus_A ANCESTRAL SPECIES ENSGT00950000183183.b.b.x #22 Mus_B ANCESTRAL SPECIES ENSGT00950000183183.b.b.x #22 Mus_C ANCESTRAL SPECIES ENSGT00950000183183.b.b.x #22 Steppe mouse MODERN SPECIES 2132 ENSMSIG00000011660 ENSMSIG00000011768 #22 F9 (ENSMSIG00000011777) Shrew mouse MODERN SPECIES 15 MGP_PahariEiJ_G0024562 Rsph10b (MGP_PahariEiJ_G0024563) #7 Ccz1 (MGP_PahariEiJ_G0024564) #8 Ocm (MGP_PahariEiJ_G0024565) #9 Lmtk2 (MGP_PahariEiJ_G0024566) #10 Bhlha15 (MGP_PahariEiJ_G0024567) #11 Tecpr1 (MGP_PahariEiJ_G0024568) #12 Bri3 (MGP_PahariEiJ_G0024569) #13 Baiap2l1 (MGP_PahariEiJ_G0024570) #14 Nptx2 (MGP_PahariEiJ_G0024571) #16 Tmem130 (MGP_PahariEiJ_G0024572) #17 Trrap (MGP_PahariEiJ_G0024573) #18 Smurf1 (MGP_PahariEiJ_G0024574) #19 Kpna7 (MGP_PahariEiJ_G0024575) #20 MGP_PahariEiJ_G0024576 #21 Arpc1b (MGP_PahariEiJ_G0024577) #22 Pdap1 (MGP_PahariEiJ_G0024578) #23 Bud31 (MGP_PahariEiJ_G0024579) #24 Ptcd1 (MGP_PahariEiJ_G0024580) Cpsf4 (MGP_PahariEiJ_G0024581) #26 Atp5j2 (MGP_PahariEiJ_G0024582) #27 Zkscan14 (MGP_PahariEiJ_G0024583) #28 Zkscan5 (MGP_PahariEiJ_G0024584) #30 Zfp655 (MGP_PahariEiJ_G0024585) #31 Zscan25 (MGP_PahariEiJ_G0024586) #32 MGP_PahariEiJ_G0024587 #34 MGP_PahariEiJ_G0024589 #34 MGP_PahariEiJ_G0024588 #34 Rnf6 (MGP_PahariEiJ_G0024590) Cdk8 (MGP_PahariEiJ_G0024591) Wasf3 (MGP_PahariEiJ_G0024592) Rat MODERN SPECIES 3 Ccz1b (ENSRNOG00000001032) #8 Ocm (ENSRNOG00000001031) #9 Lmtk2 (ENSRNOG00000025155) #10 Bhlha15 (ENSRNOG00000025164) #11 Tecpr1 (ENSRNOG00000001010) #12 Bri3 (ENSRNOG00000001009) #13 Baiap2l1 (ENSRNOG00000001007) #14 RGD1565131 (ENSRNOG00000025212) LOC100360200 (ENSRNOG00000025217) #26 Nptx2 (ENSRNOG00000001006) #16 Tmem130 (ENSRNOG00000025235) #17 Trrap (ENSRNOG00000025244) #18 Smurf1 (ENSRNOG00000000999) #19 Kpna7 (ENSRNOG00000042296) #20 Arpc1a (ENSRNOG00000000996) #21 Arpc1b (ENSRNOG00000000991) #22 Pdap1 (ENSRNOG00000000990) #23 Bud31 (ENSRNOG00000000989) #24 Ptcd1 (ENSRNOG00000000987) Cpsf4 (ENSRNOG00000000985) #26 Atp5mf (ENSRNOG00000027049) #27 Zfp394 (ENSRNOG00000000983) #28 Zkscan5 (ENSRNOG00000059552) #30 Zfp655 (ENSRNOG00000060129) #31 Zscan25 (ENSRNOG00000042213) #32 Cyp3a23-3a1 (ENSRNOG00000067532) #33 ENSRNOG00000062654 #34 ENSRNOG00000063231 #33 Cyp3a23-3a1 (ENSRNOG00000062027) #33 Cyp3a2 (ENSRNOG00000032560) #33 Cyp3a73 (ENSRNOG00000047745) #33 Lesser Egyptian jerboa MODERN SPECIES 250 Eif3b (ENSJJAG00000014658) Trrap (ENSJJAG00000015572) #18 Smurf1 (ENSJJAG00000011991) #19 Kpna7 (ENSJJAG00000010612) #20 ENSJJAG00000011076 #21 Arpc1b (ENSJJAG00000010687) #22 ENSJJAG00000008855 #23 Bud31 (ENSJJAG00000007925) #24 Ptcd1 (ENSJJAG00000000319) Cpsf4 (ENSJJAG00000019426) #26 Atp5j2 (ENSJJAG00000018319) #27 Zkscan14 (ENSJJAG00000017218) #28 Zkscan5 (ENSJJAG00000017033) #30 Kangaroo rat MODERN SPECIES 387 Rsph10b (ENSDORG00000027674) #7 ENSDORG00000028983 Ccz1 (ENSDORG00000013281) #8 Ocm (ENSDORG00000012852) #9 Lmtk2 (ENSDORG00000003934) #10 Bhlha15 (ENSDORG00000026874) #11 Tecpr1 (ENSDORG00000003936) #12 ENSDORG00000027487 Baiap2l1 (ENSDORG00000007704) #14 Nptx2 (ENSDORG00000002048) #16 Tmem130 (ENSDORG00000008927) #17 Trrap (ENSDORG00000016733) #18 Smurf1 (ENSDORG00000001289) #19 Kpna7 (ENSDORG00000001481) #20 ENSDORG00000016059 #21 Arpc1b (ENSDORG00000000737) #22 Pdap1 (ENSDORG00000000738) #23 ENSDORG00000000739 #24 Ptcd1 (ENSDORG00000000740) Cpsf4 (ENSDORG00000000742) #26 Atp5j2 (ENSDORG00000000743) #27 Zkscan14 (ENSDORG00000006843) #28 ENSDORG00000027431 ENSDORG00000029957 Zscan25 (ENSDORG00000024526) #32 ENSDORG00000030120 ENSDORG00000012448 ##34 ENSDORG00000027377 ##34 Gjc3 (ENSDORG00000004757) Zkscan1 (ENSDORG00000025152) Zscan21 (ENSDORG00000009833) Rodentia_A ANCESTRAL SPECIES 10 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a Sciuridae ANCESTRAL SPECIES 9 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.ib #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.e.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a Marmotini ANCESTRAL SPECIES 85 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.ib #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.e.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##34 Marmotini_b ANCESTRAL SPECIES 131 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.ib #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.e.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##34 Squirrel MODERN SPECIES 350 ENSSTOG00000006111 ENSSTOG00000026631 #7 ENSSTOG00000006071 #8 ENSSTOG00000010731 #9 LMTK2 (ENSSTOG00000009706) #10 BHLHA15 (ENSSTOG00000009728) #11 TECPR1 (ENSSTOG00000009733) #12 BRI3 (ENSSTOG00000021622) #13 BAIAP2L1 (ENSSTOG00000020782) #14 NPTX2 (ENSSTOG00000003631) #16 TMEM130 (ENSSTOG00000010723) #17 TRRAP (ENSSTOG00000028392) #18 SMURF1 (ENSSTOG00000015427) #19 KPNA7 (ENSSTOG00000032733) #20 ARPC1A (ENSSTOG00000001660) #21 ARPC1B (ENSSTOG00000001668) #22 PDAP1 (ENSSTOG00000001679) #23 BUD31 (ENSSTOG00000023828) #24 PTCD1 (ENSSTOG00000001682) CPSF4 (ENSSTOG00000001688) #26 ATP5MF (ENSSTOG00000023928) #27 ENSSTOG00000034172 ZNF394 (ENSSTOG00000032054) #28 ZKSCAN5 (ENSSTOG00000019879) #30 ZNF655 (ENSSTOG00000008206) #31 ZSCAN25 (ENSSTOG00000008185) #32 Arctic ground squirrel MODERN SPECIES 300 ENSUPAG00010006347 #8 ENSUPAG00010006809 #9 LMTK2 (ENSUPAG00010006825) #10 BHLHA15 (ENSUPAG00010006858) #11 TECPR1 (ENSUPAG00010006865) #12 BRI3 (ENSUPAG00010006894) #13 BAIAP2L1 (ENSUPAG00010006906) #14 NPTX2 (ENSUPAG00010006944) #16 TMEM130 (ENSUPAG00010006958) #17 TRRAP (ENSUPAG00010006983) #18 ENSUPAG00010007610 SMURF1 (ENSUPAG00010007614) #19 KPNA7 (ENSUPAG00010007717) #20 ENSUPAG00010007740 ARPC1A (ENSUPAG00010007778) #21 ARPC1B (ENSUPAG00010007793) #22 PDAP1 (ENSUPAG00010007814) #23 BUD31 (ENSUPAG00010007837) #24 PTCD1 (ENSUPAG00010007850) CPSF4 (ENSUPAG00010007865) #26 ENSUPAG00010007991 ENSUPAG00010007996 #27 ENSUPAG00010008010 #28 ENSUPAG00010008013 #28 ZKSCAN5 (ENSUPAG00010008019) #30 ZNF655 (ENSUPAG00010008051) #31 TMEM225B (ENSUPAG00010008085) ZSCAN25 (ENSUPAG00010008096) #32 ENSUPAG00010008106 ##34 ENSUPAG00010008122 ##34 ENSUPAG00010008173 ##34 Alpin marmot MODERN SPECIES 77 ENSMMMG00000006346 #8 ENSMMMG00000006340 #9 LMTK2 (ENSMMMG00000006321) #10 BHLHA15 (ENSMMMG00000006320) #11 TECPR1 (ENSMMMG00000006293) #12 ENSMMMG00000006285 BRI3 (ENSMMMG00000006279) #13 BAIAP2L1 (ENSMMMG00000006242) #14 NPTX2 (ENSMMMG00000006236) #16 TMEM130 (ENSMMMG00000006225) #17 TRRAP (ENSMMMG00000005650) #18 SMURF1 (ENSMMMG00000005602) #19 KPNA7 (ENSMMMG00000005564) #20 ENSMMMG00000005492 ARPC1A (ENSMMMG00000005477) #21 ARPC1B (ENSMMMG00000005459) #22 PDAP1 (ENSMMMG00000005448) #23 BUD31 (ENSMMMG00000005402) #24 PTCD1 (ENSMMMG00000005393) ENSMMMG00000005390 CPSF4 (ENSMMMG00000005304) #26 ENSMMMG00000005266 #27 ZNF394 (ENSMMMG00000005254) #28 ZKSCAN5 (ENSMMMG00000005213) #30 ZNF655 (ENSMMMG00000005178) #31 TMEM225B (ENSMMMG00000005168) ZSCAN25 (ENSMMMG00000005159) #32 ENSMMMG00000005149 ##34 ENSMMMG00000005108 ##34 ENSMMMG00000005062 ##34 Eurasian red squirrel MODERN SPECIES 9 ENSSVLG00005020724 #8 ENSSVLG00005020777 #9 LMTK2 (ENSSVLG00005020820) #10 BHLHA15 (ENSSVLG00005020870) #11 TECPR1 (ENSSVLG00005020896) #12 ENSSVLG00005020936 BRI3 (ENSSVLG00005020971) #13 BAIAP2L1 (ENSSVLG00005021009) #14 NPTX2 (ENSSVLG00005021028) #16 TMEM130 (ENSSVLG00005021101) #17 TRRAP (ENSSVLG00005021317) #18 SMURF1 (ENSSVLG00005021442) #19 KPNA7 (ENSSVLG00005021513) #20 ENSSVLG00005021650 ENSSVLG00005021905 #21 ARPC1B (ENSSVLG00005021982) #22 ENSSVLG00005022058 #23 BUD31 (ENSSVLG00005022102) #24 PTCD1 (ENSSVLG00005022169) CPSF4 (ENSSVLG00005022210) #26 ENSSVLG00005022299 #27 ENSSVLG00005022403 ZNF789 (ENSSVLG00005022423) ZNF394 (ENSSVLG00005022501) #28 ZKSCAN5 (ENSSVLG00005022583) #30 ZNF655 (ENSSVLG00005022626) #31 TMEM225B (ENSSVLG00005022717) ZSCAN25 (ENSSVLG00005022756) #32 ENSSVLG00005022805 ##34 ENSSVLG00005023015 ##34 OR2AE1 (ENSSVLG00005023354) Hystricomorpha ANCESTRAL SPECIES 17 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 Hystricomorpha_a ANCESTRAL SPECIES 16 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 Guinea pig MODERN SPECIES 30 ENSCPOG00000019836 #7 ENSCPOG00000014787 #8 ENSCPOG00000011911 #9 ENSCPOG00000031560 LMTK2 (ENSCPOG00000009408) #10 BHLHA15 (ENSCPOG00000033368) #11 TECPR1 (ENSCPOG00000010430) #12 BRI3 (ENSCPOG00000025281) #13 BAIAP2L1 (ENSCPOG00000009274) #14 NPTX2 (ENSCPOG00000012135) #16 TMEM130 (ENSCPOG00000010669) #17 TRRAP (ENSCPOG00000007298) #18 SMURF1 (ENSCPOG00000000124) #19 KPNA7 (ENSCPOG00000014326) #20 ENSCPOG00000001777 #21 ARPC1B (ENSCPOG00000020413) #22 PDAP1 (ENSCPOG00000023217) #23 BUD31 (ENSCPOG00000001779) #24 PTCD1 (ENSCPOG00000001780) CPSF4 (ENSCPOG00000001783) #26 ENSCPOG00000034651 ZNF394 (ENSCPOG00000013321) #28 ZKSCAN5 (ENSCPOG00000032578) #30 ZNF655 (ENSCPOG00000032275) #31 ZSCAN25 (ENSCPOG00000031211) #32 Cyp3a14 (ENSCPOG00000001589) #34 ENSCPOG00000024937 #34 ENSCPOG00000012976 #34 ENSCPOG00000020375 ##34 ENSCPOG00000022315 ##34 GJC3 (ENSCPOG00000012551) Hystricomorpha_b ANCESTRAL SPECIES 55 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 Degu MODERN SPECIES 72 EIF2AK1 (ENSODEG00000011509) ENSODEG00000011718 ENSODEG00000012084 ENSODEG00000011251 #8 ENSODEG00000011077 #9 LMTK2 (ENSODEG00000012233) #10 TECPR1 (ENSODEG00000011578) #12 BRI3 (ENSODEG00000010514) #13 BAIAP2L1 (ENSODEG00000010504) #14 ENSODEG00000012635 NPTX2 (ENSODEG00000011311) #16 TMEM130 (ENSODEG00000010706) #17 TRRAP (ENSODEG00000013196) #18 SMURF1 (ENSODEG00000012098) #19 ENSODEG00000010891 #21 ARPC1B (ENSODEG00000011865) #22 ENSODEG00000012197 #23 BUD31 (ENSODEG00000011226) #24 ENSODEG00000011181 #26 ENSODEG00000012299 ZKSCAN5 (ENSODEG00000012014) #30 ZNF655 (ENSODEG00000011702) #31 ZSCAN25 (ENSODEG00000012099) #32 Long-tailed chinchilla MODERN SPECIES 167 ENSCLAG00000009853 ENSCLAG00000004477 #7 ENSCLAG00000006812 #8 ENSCLAG00000007617 #9 LMTK2 (ENSCLAG00000005806) #10 BHLHA15 (ENSCLAG00000006581) #11 TECPR1 (ENSCLAG00000006941) #12 BRI3 (ENSCLAG00000012095) #13 BAIAP2L1 (ENSCLAG00000013528) #14 NPTX2 (ENSCLAG00000013930) #16 TMEM130 (ENSCLAG00000006489) #17 TRRAP (ENSCLAG00000007110) #18 SMURF1 (ENSCLAG00000005211) #19 KPNA7 (ENSCLAG00000006067) #20 ARPC1A (ENSCLAG00000006964) #21 ARPC1B (ENSCLAG00000006996) #22 PDAP1 (ENSCLAG00000007628) #23 BUD31 (ENSCLAG00000008079) #24 PTCD1 (ENSCLAG00000006354) CPSF4 (ENSCLAG00000007050) #26 ATP5MF (ENSCLAG00000004636) #27 ZNF394 (ENSCLAG00000005098) #28 ZKSCAN5 (ENSCLAG00000006450) #30 ZNF655 (ENSCLAG00000012856) #31 TMEM225B (ENSCLAG00000007073) ZSCAN25 (ENSCLAG00000006740) #32 Naked mole-rat female MODERN SPECIES BHLHA15 (ENSHGLG00000033900) #11 TECPR1 (ENSHGLG00000018344) #12 ENSHGLG00000015104 ENSHGLG00000013687 ENSHGLG00000032492 BAIAP2L1 (ENSHGLG00000017707) #14 ENSHGLG00000044552 ENSHGLG00000007737 #16 ENSHGLG00000042548 TMEM130 (ENSHGLG00000008380) #17 TRRAP (ENSHGLG00000013805) #18 SMURF1 (ENSHGLG00000006003) #19 ENSHGLG00000009628 #20 ENSHGLG00000043221 ENSHGLG00000017246 #21 ARPC1B (ENSHGLG00000017816) #22 PDAP1 (ENSHGLG00000013857) #23 ENSHGLG00000018123 #24 PTCD1 (ENSHGLG00000017621) ENSHGLG00000017150 #26 ENSHGLG00000006068 #27 ENSHGLG00000006453 ZNF394 (ENSHGLG00000033544) #28 ZKSCAN5 (ENSHGLG00000009175) #30 ZNF655 (ENSHGLG00000005530) #31 ENSHGLG00000040144 #32 ENSHGLG00000033148 ENSHGLG00000038153 ENSHGLG00000041246 ENSHGLG00000000859 HS3ST5 (ENSHGLG00000045242) Lagomorpha ANCESTRAL SPECIES 54 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.b ##34 ENSGT00950000183069.a.a ENSGT01090000260018.B.b ENSGT00940000163330 ENSGT01090000260005.a.a.a.a.d Pika MODERN SPECIES 1043 ARPC1B (ENSOPRG00000013600) #22 PDAP1 (ENSOPRG00000013615) #23 BUD31 (ENSOPRG00000013631) #24 PTCD1 (ENSOPRG00000013647) CPSF4 (ENSOPRG00000013663) #26 ATP5MF (ENSOPRG00000013680) #27 Rabbit MODERN SPECIES 493 NPTX2 (ENSOCUG00000017210) #16 TMEM130 (ENSOCUG00000014924) #17 TRRAP (ENSOCUG00000001829) #18 SMURF1 (ENSOCUG00000016326) #19 KPNA7 (ENSOCUG00000001792) #20 ARPC1A (ENSOCUG00000003944) #21 ARPC1B (ENSOCUG00000025962) #22 PDAP1 (ENSOCUG00000010572) #23 BUD31 (ENSOCUG00000010576) #24 PTCD1 (ENSOCUG00000010584) CPSF4 (ENSOCUG00000002437) #26 ENSOCUG00000015693 #27 ENSOCUG00000038839 ZNF394 (ENSOCUG00000002444) #28 ZKSCAN5 (ENSOCUG00000002447) #30 ZNF655 (ENSOCUG00000007932) #31 ZSCAN25 (ENSOCUG00000007939) #32 ENSOCUG00000025181 ENSOCUG00000024710 CYP3A6 (ENSOCUG00000023380) ##34 ENSOCUG00000027046 ENSOCUG00000035935 Tree shrew MODERN SPECIES 3419 TMEM130 (ENSTBEG00000001601) #17 TRRAP (ENSTBEG00000002243) #18 SMURF1 (ENSTBEG00000008251) #19 KPNA7 (ENSTBEG00000009007) #20 ENSTBEG00000009317 ARPC1B (ENSTBEG00000009902) #22 PDAP1 (ENSTBEG00000010152) #23 BUD31 (ENSTBEG00000010640) #24 PTCD1 (ENSTBEG00000011021) CPSF4 (ENSTBEG00000011406) #26 ENSTBEG00000012332 #27 Primates ANCESTRAL SPECIES 11 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a ##34 ENSGT01090000260018.B.b Strepsirrhini ANCESTRAL SPECIES 14 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a.b ##34 ENSGT00950000182958.a.b.b.i.a.a ##34 Lemuriformes ANCESTRAL SPECIES 6 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.s.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a.a ##34 ENSGT00950000182958.a.b.b.i.a.b ##34 Lemuriformes_a ANCESTRAL SPECIES 16 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.s.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a.a ##34 ENSGT00940000165702 Coquerels sifaka MODERN SPECIES 155 PMS2 (ENSPCOG00000019462) ENSPCOG00000024104 #7 ENSPCOG00000025277 #8 ENSPCOG00000017766 #9 LMTK2 (ENSPCOG00000025104) #10 TECPR1 (ENSPCOG00000015825) #12 BRI3 (ENSPCOG00000000280) #13 BAIAP2L1 (ENSPCOG00000022611) #14 NPTX2 (ENSPCOG00000024897) #16 TMEM130 (ENSPCOG00000025459) #17 TRRAP (ENSPCOG00000021914) #18 SMURF1 (ENSPCOG00000023089) #19 KPNA7 (ENSPCOG00000026168) #20 ENSPCOG00000017933 ENSPCOG00000013572 #21 ARPC1B (ENSPCOG00000010552) #22 PDAP1 (ENSPCOG00000024638) #23 BUD31 (ENSPCOG00000016931) #24 PTCD1 (ENSPCOG00000018596) CPSF4 (ENSPCOG00000012771) #26 ATP5MF (ENSPCOG00000027298) #27 ZNF789 (ENSPCOG00000020262) ZNF394 (ENSPCOG00000025668) #28 ZKSCAN5 (ENSPCOG00000024797) #30 ZNF655 (ENSPCOG00000017676) #31 TMEM225B (ENSPCOG00000020944) ZSCAN25 (ENSPCOG00000020153) #32 ENSPCOG00000002834 ##34 ENSPCOG00000023160 CYP3A201 (ENSPCOG00000018451) ##34 CYP3A5 (ENSPCOG00000018679) ##34 Greater bamboo lemur MODERN SPECIES 522 ENSPSMG00000003157 ENSPSMG00000003259 #8 ENSPSMG00000003348 #9 LMTK2 (ENSPSMG00000003391) #10 BHLHA15 (ENSPSMG00000003426) #11 TECPR1 (ENSPSMG00000003451) #12 BRI3 (ENSPSMG00000003477) #13 BAIAP2L1 (ENSPSMG00000003502) #14 NPTX2 (ENSPSMG00000003510) #16 ENSPSMG00000003514 TMEM130 (ENSPSMG00000003560) #17 TRRAP (ENSPSMG00000004004) #18 SMURF1 (ENSPSMG00000004395) #19 KPNA7 (ENSPSMG00000004499) #20 ARPC1A (ENSPSMG00000004536) #21 ARPC1B (ENSPSMG00000004575) #22 PDAP1 (ENSPSMG00000004603) #23 BUD31 (ENSPSMG00000004621) #24 PTCD1 (ENSPSMG00000004631) CPSF4 (ENSPSMG00000004691) #26 ATP5MF (ENSPSMG00000004717) #27 ENSPSMG00000004726 ZNF789 (ENSPSMG00000004734) ENSPSMG00000004745 #28 ZKSCAN5 (ENSPSMG00000004768) #30 ENSPSMG00000004779 FAM200A (ENSPSMG00000004785) ZNF655 (ENSPSMG00000004861) #31 TMEM225B (ENSPSMG00000004872) ZSCAN25 (ENSPSMG00000004884) #32 ENSPSMG00000004900 ##34 Mouse lemur MODERN SPECIES 8 ENSMICG00000012751 #8 ENSMICG00000042503 #9 ENSMICG00000046401 LMTK2 (ENSMICG00000002866) #10 BHLHA15 (ENSMICG00000036615) #11 TECPR1 (ENSMICG00000002874) #12 ENSMICG00000043223 #13 BAIAP2L1 (ENSMICG00000002891) #14 NPTX2 (ENSMICG00000002901) #16 TMEM130 (ENSMICG00000002904) #17 TRRAP (ENSMICG00000002909) #18 SMURF1 (ENSMICG00000042244) #19 KPNA7 (ENSMICG00000017420) #20 ENSMICG00000017421 ENSMICG00000017423 #21 ARPC1B (ENSMICG00000017424) #22 PDAP1 (ENSMICG00000017425) #23 ENSMICG00000017426 #24 PTCD1 (ENSMICG00000017428) CPSF4 (ENSMICG00000017429) #26 ENSMICG00000044867 #27 ENSMICG00000034093 ZNF789 (ENSMICG00000005979) ZNF394 (ENSMICG00000005987) #28 ZKSCAN5 (ENSMICG00000005991) #30 ZNF655 (ENSMICG00000006010) #31 TMEM225B (ENSMICG00000029262) ZSCAN25 (ENSMICG00000006018) #32 ENSMICG00000014650 ##34 ENSMICG00000006024 ##34 TRIM4 (ENSMICG00000005567) Bushbaby MODERN SPECIES 257 ENSOGAG00000001126 #7 ENSOGAG00000027379 #8 ENSOGAG00000007674 #9 LMTK2 (ENSOGAG00000010100) #10 BHLHA15 (ENSOGAG00000010106) #11 TECPR1 (ENSOGAG00000010108) #12 ENSOGAG00000000638 #13 BAIAP2L1 (ENSOGAG00000000639) #14 NPTX2 (ENSOGAG00000000640) #16 TMEM130 (ENSOGAG00000000642) #17 TRRAP (ENSOGAG00000000643) #18 SMURF1 (ENSOGAG00000009903) #19 ENSOGAG00000031106 #20 ENSOGAG00000028575 ARPC1A (ENSOGAG00000010870) #21 ARPC1B (ENSOGAG00000010872) #22 ENSOGAG00000010874 #23 BUD31 (ENSOGAG00000010875) #24 PTCD1 (ENSOGAG00000010877) CPSF4 (ENSOGAG00000010884) #26 ENSOGAG00000032002 ZNF394 (ENSOGAG00000025525) #28 ZKSCAN5 (ENSOGAG00000010899) #30 FAM200A (ENSOGAG00000026707) ZNF655 (ENSOGAG00000009915) #31 TMEM225B (ENSOGAG00000032661) ZSCAN25 (ENSOGAG00000011024) #32 CYP3A4 (ENSOGAG00000011021) ##34 CYP3A169 (ENSOGAG00000004122) ##34 ENSOGAG00000004125 ##34 ENSOGAG00000032785 Haplorrhini ANCESTRAL SPECIES 26 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a ##34 ENSGT01090000260018.B.b ENSGT00940000163330 Tarsier MODERN SPECIES 4203 ENSTSYG00000009967 ARPC1A (ENSTSYG00000003574) #21 ARPC1B (ENSTSYG00000033630) #22 PDAP1 (ENSTSYG00000035864) #23 BUD31 (ENSTSYG00000026135) #24 PTCD1 (ENSTSYG00000029495) CPSF4 (ENSTSYG00000005712) #26 ATP5MF (ENSTSYG00000026376) #27 ZNF394 (ENSTSYG00000013540) #28 ZNF789 (ENSTSYG00000031696) ZKSCAN5 (ENSTSYG00000014107) #30 ZNF655 (ENSTSYG00000002676) #31 TMEM225B (ENSTSYG00000032314) ZSCAN25 (ENSTSYG00000033603) #32 ENSTSYG00000009030 Simiiformes ANCESTRAL SPECIES 26 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00950000182958.a.b.b.i.a ##34 Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES ENSGT00950000183183.b.b.y #22 Cebidae ANCESTRAL SPECIES ENSGT00950000183183.b.b.y #22 Cebidae_a ANCESTRAL SPECIES 19 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.y #22 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00940000163330 Capuchin MODERN SPECIES 82 ENSCCAG00000023211 #7 ENSCCAG00000000590 ENSCCAG00000008446 #8 ENSCCAG00000027694 #9 LMTK2 (ENSCCAG00000021992) #10 TECPR1 (ENSCCAG00000022147) #12 BRI3 (ENSCCAG00000022002) #13 BAIAP2L1 (ENSCCAG00000022124) #14 NPTX2 (ENSCCAG00000021986) #16 TMEM130 (ENSCCAG00000021884) #17 TRRAP (ENSCCAG00000031555) #18 SMURF1 (ENSCCAG00000037956) #19 ENSCCAG00000037962 #20 ENSCCAG00000024944 ARPC1A (ENSCCAG00000019780) #21 ENSCCAG00000037322 #22 PDAP1 (ENSCCAG00000031892) #23 BUD31 (ENSCCAG00000021788) #24 PTCD1 (ENSCCAG00000034025) CPSF4 (ENSCCAG00000028291) #26 ENSCCAG00000017059 #27 ENSCCAG00000020703 ZNF394 (ENSCCAG00000027351) #28 ZNF789 (ENSCCAG00000025456) ZKSCAN5 (ENSCCAG00000030902) #30 ZNF655 (ENSCCAG00000022358) #31 TMEM225B (ENSCCAG00000018539) ENSCCAG00000037804 ZSCAN25 (ENSCCAG00000037223) #32 CYP3A5 (ENSCCAG00000034158) ##34 CYP3A90 (ENSCCAG00000036748) ##34 Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES ENSGT00950000183183.b.b.z.a #22 Cebidae ANCESTRAL SPECIES 24 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.z.a #22 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00940000163330 Cebidae_a ANCESTRAL SPECIES ENSGT00950000183183.b.b.z.a #22 Capuchin MODERN SPECIES 762 ENSCCAG00000022023 #22 PROS1 (ENSCCAG00000007509) ARL13B (ENSCCAG00000024532) ENSCCAG00000020571 NSUN3 (ENSCCAG00000019943) Marmoset MODERN SPECIES 11 ENSCJAG00000015308 #7 ENSCJAG00000015269 #8 ENSCJAG00000015258 #9 LMTK2 (ENSCJAG00000015240) #10 BHLHA15 (ENSCJAG00000023085) #11 TECPR1 (ENSCJAG00000033050) #12 BRI3 (ENSCJAG00000071589) #13 BAIAP2L1 (ENSCJAG00000031937) #14 NPTX2 (ENSCJAG00000015220) #16 ENSCJAG00000078860 TMEM130 (ENSCJAG00000016109) #17 TRRAP (ENSCJAG00000016008) #18 SMURF1 (ENSCJAG00000046325) #19 KPNA7 (ENSCJAG00000015943) #20 ENSCJAG00000015859 #21 ENSCJAG00000015849 #22 PDAP1 (ENSCJAG00000015838) #23 BUD31 (ENSCJAG00000015836) #24 PTCD1 (ENSCJAG00000015815) CPSF4 (ENSCJAG00000015826) #26 ATP5MF (ENSCJAG00000045628) #27 ZNF789 (ENSCJAG00000015813) ZKSCAN5 (ENSCJAG00000015788) #30 ZNF394 (ENSCJAG00000015808) #28 ZNF655 (ENSCJAG00000032195) #31 TMEM225B (ENSCJAG00000033315) ZSCAN25 (ENSCJAG00000015783) #32 CYP3A90 (ENSCJAG00000064350) ##34 CYP3A5 (ENSCJAG00000064981) ##34 CYP3A4 (ENSCJAG00000015744) ##34 TRIM4 (ENSCJAG00000015702) Mas night monkey MODERN SPECIES 514 ENSANAG00000025161 UXS1 (ENSANAG00000029989) ENSANAG00000036314 ECRG4 (ENSANAG00000025705) ENSANAG00000025417 ENSANAG00000034596 ENSANAG00000031830 ENSANAG00000022431 #22 NCK2 (ENSANAG00000032429) ENSANAG00000031587 ENSANAG00000030079 ENSANAG00000026010 MALL (ENSANAG00000025387) Platyrrhini ANCESTRAL SPECIES 19 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00940000163330 ENSGT01090000260005.a.a.a.a Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 556 PMS2 (ENSANAG00000030348) ENSANAG00000008157 #7 ENSANAG00000034191 #8 ENSANAG00000024814 #9 LMTK2 (ENSANAG00000030215) #10 TECPR1 (ENSANAG00000034833) #12 BRI3 (ENSANAG00000027654) #13 ENSANAG00000024350 #14 NPTX2 (ENSANAG00000037968) #16 TMEM130 (ENSANAG00000034905) #17 TRRAP (ENSANAG00000031335) #18 SMURF1 (ENSANAG00000031906) #19 ENSANAG00000024791 #20 ENSANAG00000019992 ARPC1A (ENSANAG00000038029) #21 ENSANAG00000023601 #22 PDAP1 (ENSANAG00000035351) #23 ENSANAG00000027119 #24 PTCD1 (ENSANAG00000035790) CPSF4 (ENSANAG00000021360) #26 ATP5MF (ENSANAG00000021638) #27 ZNF394 (ENSANAG00000030792) #28 ZNF789 (ENSANAG00000028480) ZKSCAN5 (ENSANAG00000032873) #30 ZNF655 (ENSANAG00000029025) #31 TMEM225B (ENSANAG00000035558) ZSCAN25 (ENSANAG00000020427) #32 ENSANAG00000022722 CYP3A5 (ENSANAG00000032272) ##34 TRIM4 (ENSANAG00000036020) GJC3 (ENSANAG00000030391) Mas night monkey MODERN SPECIES 478 CRYBG1 (ENSANAG00000023839) RTN4IP1 (ENSANAG00000037479) ENSANAG00000003965 ENSANAG00000037838 ENSANAG00000036990 ENSANAG00000037315 BEND3 (ENSANAG00000021126) PDSS2 (ENSANAG00000015555) SOBP (ENSANAG00000034007) ENSANAG00000025986 SCML4 (ENSANAG00000021645) SEC63 (ENSANAG00000022108) ENSANAG00000019987 ENSANAG00000037950 NR2E1 (ENSANAG00000020325) ENSANAG00000030536 #22 SNX3 (ENSANAG00000028701) AFG1L (ENSANAG00000033061) ENSANAG00000023931 ARMC2 (ENSANAG00000027283) SESN1 (ENSANAG00000026899) CEP57L1 (ENSANAG00000031702) ENSANAG00000036298 CD164 (ENSANAG00000012591) PPIL6 (ENSANAG00000023713) SMPD2 (ENSANAG00000028732) MICAL1 (ENSANAG00000034803) ZBTB24 (ENSANAG00000023992) AK9 (ENSANAG00000028754) FIG4 (ENSANAG00000026338) GPR6 (ENSANAG00000024209) Cebidae ANCESTRAL SPECIES 24 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.z.a #22 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00940000163330 ENSGT01090000260005.a.a.a.a Cebidae_a ANCESTRAL SPECIES 19 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.y #22 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00940000163330 ENSGT01090000260005.a.a.a.a Bolivian squirrel monkey MODERN SPECIES 104 ENSSBOG00000027924 PMS2 (ENSSBOG00000028728) ENSSBOG00000031799 #7 ENSSBOG00000032415 #8 ENSSBOG00000021103 #9 LMTK2 (ENSSBOG00000035095) #10 TECPR1 (ENSSBOG00000018971) #12 ENSSBOG00000032858 #13 ENSSBOG00000018064 #14 NPTX2 (ENSSBOG00000029192) #16 TMEM130 (ENSSBOG00000023597) #17 TRRAP (ENSSBOG00000022151) #18 SMURF1 (ENSSBOG00000026488) #19 ENSSBOG00000032329 #20 ENSSBOG00000035988 ARPC1B (ENSSBOG00000017784) #22 ENSSBOG00000035146 #23 BUD31 (ENSSBOG00000027048) #24 PTCD1 (ENSSBOG00000024114) CPSF4 (ENSSBOG00000020493) #26 ATP5MF (ENSSBOG00000032284) #27 ZNF394 (ENSSBOG00000026184) #28 ZNF789 (ENSSBOG00000027974) ZKSCAN5 (ENSSBOG00000020293) #30 ZNF655 (ENSSBOG00000023361) #31 TMEM225B (ENSSBOG00000035101) ZSCAN25 (ENSSBOG00000032849) #32 CYP3A90 (ENSSBOG00000022364) ##34 CYP3A5 (ENSSBOG00000030571) ##34 CYP3A4 (ENSSBOG00000035505) ##34 TRIM4 (ENSSBOG00000032029) Marmoset MODERN SPECIES 18 AKAP13 (ENSCJAG00000009388) ENSCJAG00000057743 ENSCJAG00000052178 ADAMTS7 (ENSCJAG00000002181) MORF4L1 (ENSCJAG00000002214) ENSCJAG00000002305 ENSCJAG00000085127 RASGRF1 (ENSCJAG00000002316) ANKRD34C (ENSCJAG00000005284) TMED3 (ENSCJAG00000005277) ENSCJAG00000080331 ENSCJAG00000063236 ENSCJAG00000087217 ENSCJAG00000078641 ENSCJAG00000086335 ENSCJAG00000043892 #22 ENSCJAG00000076001 ENSCJAG00000008511 ENSCJAG00000079776 ENSCJAG00000081875 ENSCJAG00000087135 MTHFS (ENSCJAG00000007560) BCL2A1 (ENSCJAG00000007569) ENSCJAG00000074804 ZFAND6 (ENSCJAG00000007572) FAH (ENSCJAG00000007600) ENSCJAG00000062260 ARNT2 (ENSCJAG00000007640) ABHD17C (ENSCJAG00000007705) CEMIP (ENSCJAG00000007708) MESD (ENSCJAG00000048641) Catarrhini ANCESTRAL SPECIES 6 ENSGT00940000170143 ENSGT00390000004713.c #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n #23 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 Cercopithecidae ANCESTRAL SPECIES 11 ENSGT00940000170143 ENSGT00390000004713.c #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.d #27 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 46 ENSGT00390000017980.hb ENSGT00910000148510 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b.`b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.d.d #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.c ##34 ENSGT00950000182958.a.b.b.i.b.b.c.a ##34 Golden snub-nosed monkey MODERN SPECIES 1891 TMEM130 (ENSRROG00000041705) #17 TRRAP (ENSRROG00000038566) #18 SMURF1 (ENSRROG00000033605) #19 KPNA7 (ENSRROG00000038253) #20 ENSRROG00000029302 ARPC1A (ENSRROG00000034397) #21 ENSRROG00000039173 #22 ENSRROG00000040014 #23 BUD31 (ENSRROG00000036579) #24 PTCD1 (ENSRROG00000036420) CPSF4 (ENSRROG00000040431) #26 ENSRROG00000035599 #27 ZNF789 (ENSRROG00000024718) ZNF394 (ENSRROG00000034088) #28 ZKSCAN5 (ENSRROG00000034392) #30 FAM200A (ENSRROG00000018629) ZNF655 (ENSRROG00000044389) #31 TMEM225B (ENSRROG00000025234) ZSCAN25 (ENSRROG00000043347) #32 CYP3A5 (ENSRROG00000032359) ##34 ENSRROG00000042643 ##34 Black snub-nosed monkey MODERN SPECIES 191 ZNF701 (ENSRBIG00000038188) ENSRBIG00000028970 ENSRBIG00000037488 ENSRBIG00000037978 RORA (ENSRBIG00000022050) ICE2 (ENSRBIG00000030556) ENSRBIG00000029223 ANXA2 (ENSRBIG00000041394) NPTX2 (ENSRBIG00000037271) #16 TMEM130 (ENSRBIG00000038360) #17 TRRAP (ENSRBIG00000043840) #18 SMURF1 (ENSRBIG00000035136) #19 KPNA7 (ENSRBIG00000032648) #20 ENSRBIG00000026342 ARPC1A (ENSRBIG00000034019) #21 ARPC1B (ENSRBIG00000022904) #22 Rhinopithecus ANCESTRAL SPECIES ENSGT00950000183183.b.b.ab #22 Golden snub-nosed monkey MODERN SPECIES 1578 ENSRROG00000026908 ENSRROG00000027315 ENSRROG00000031835 ENSRROG00000025317 #22 GALC (ENSRROG00000032715) GPR65 (ENSRROG00000012184) Cercopithecinae ANCESTRAL SPECIES 8 ENSGT00940000170143 ENSGT00390000004713.c.h #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.b #27 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 Cercopithecinae_a ANCESTRAL SPECIES 8 ENSGT00940000170143 ENSGT00390000004713.c.h #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.b #27 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 Cercopithecinae_b ANCESTRAL SPECIES 36 ENSGT00390000004713.c.g #8 ENSGT00390000004713.c.h #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##34 Olive baboon MODERN SPECIES 14 ENSPANG00000051135 ENSPANG00000008247 #7 ENSPANG00000035903 ENSPANG00000033390 #9 LMTK2 (ENSPANG00000023289) #10 BHLHA15 (ENSPANG00000010823) #11 TECPR1 (ENSPANG00000020539) #12 BRI3 (ENSPANG00000015667) #13 BAIAP2L1 (ENSPANG00000024563) #14 NPTX2 (ENSPANG00000009445) #16 TMEM130 (ENSPANG00000009013) #17 TRRAP (ENSPANG00000006931) #18 SMURF1 (ENSPANG00000023126) #19 KPNA7 (ENSPANG00000021499) #20 ARPC1A (ENSPANG00000032757) #21 ARPC1B (ENSPANG00000023245) #22 ENSPANG00000025132 #23 BUD31 (ENSPANG00000006779) #24 PTCD1 (ENSPANG00000016730) CPSF4 (ENSPANG00000023123) #26 ENSPANG00000030778 #27 ENSPANG00000009919 #28 ZNF789 (ENSPANG00000009920) ZKSCAN5 (ENSPANG00000000548) #30 FAM200A (ENSPANG00000018803) ENSPANG00000018842 TMEM225B (ENSPANG00000008632) ZSCAN25 (ENSPANG00000023896) #32 CYP3A5 (ENSPANG00000023122) ##34 CYP3A7 (ENSPANG00000008155) ##34 CYP3A4 (ENSPANG00000017641) ##34 Cercopithecinae_d ANCESTRAL SPECIES 75 ENSGT00940000159899 #7 ENSGT00390000004713.c.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##34 Sooty mangabey MODERN SPECIES 630 ENSCATG00000011606 #8 ENSCATG00000042940 #9 LMTK2 (ENSCATG00000037130) #10 ENSCATG00000017491 BHLHA15 (ENSCATG00000021737) #11 TECPR1 (ENSCATG00000043836) #12 BRI3 (ENSCATG00000039656) #13 BAIAP2L1 (ENSCATG00000033297) #14 NPTX2 (ENSCATG00000035885) #16 TMEM130 (ENSCATG00000034901) #17 TRRAP (ENSCATG00000032049) #18 SMURF1 (ENSCATG00000019164) #19 KPNA7 (ENSCATG00000016098) #20 ENSCATG00000045237 ARPC1A (ENSCATG00000034511) #21 ARPC1B (ENSCATG00000037261) #22 ENSCATG00000037918 #23 BUD31 (ENSCATG00000042456) #24 PTCD1 (ENSCATG00000040859) CPSF4 (ENSCATG00000038440) #26 ENSCATG00000030778 ENSCATG00000040640 #27 ZNF789 (ENSCATG00000042095) ZNF394 (ENSCATG00000042636) #28 ZKSCAN5 (ENSCATG00000043807) #30 FAM200A (ENSCATG00000007135) ZNF655 (ENSCATG00000041092) #31 TMEM225B (ENSCATG00000038153) ZSCAN25 (ENSCATG00000010757) #32 CYP3A7 (ENSCATG00000036704) ##34 CYP3A43 (ENSCATG00000033186) ##34 Drill DUPLICATION Drill MODERN SPECIES 930 ENSMLEG00000030927 #7 ENSMLEG00000030378 #8 ENSMLEG00000037262 #9 LMTK2 (ENSMLEG00000033242) #10 BHLHA15 (ENSMLEG00000005175) #11 TECPR1 (ENSMLEG00000033546) #12 BRI3 (ENSMLEG00000038264) #13 BAIAP2L1 (ENSMLEG00000030011) #14 NPTX2 (ENSMLEG00000034636) #16 TMEM130 (ENSMLEG00000024016) #17 TRRAP (ENSMLEG00000020926) #18 SMURF1 (ENSMLEG00000041278) #19 KPNA7 (ENSMLEG00000041680) #20 ENSMLEG00000036464 ARPC1A (ENSMLEG00000031614) #21 ENSMLEG00000041405 #22 ENSMLEG00000031168 #22 ENSMLEG00000029041 #23 BUD31 (ENSMLEG00000035118) #24 PTCD1 (ENSMLEG00000031179) CPSF4 (ENSMLEG00000034721) #26 ATP5MF (ENSMLEG00000043000) #27 ZNF394 (ENSMLEG00000040037) #28 ZNF789 (ENSMLEG00000041142) ZKSCAN5 (ENSMLEG00000034683) #30 FAM200A (ENSMLEG00000001071) ZNF655 (ENSMLEG00000041871) #31 TMEM225B (ENSMLEG00000037236) ZSCAN25 (ENSMLEG00000006141) #32 CYP3A5 (ENSMLEG00000042908) ##34 CYP3A67 (ENSMLEG00000035821) ##34 Drill MODERN SPECIES 930 ENSMLEG00000030378 #8 ENSMLEG00000037262 #9 LMTK2 (ENSMLEG00000033242) #10 BHLHA15 (ENSMLEG00000005175) #11 TECPR1 (ENSMLEG00000033546) #12 BRI3 (ENSMLEG00000038264) #13 BAIAP2L1 (ENSMLEG00000030011) #14 NPTX2 (ENSMLEG00000034636) #16 TMEM130 (ENSMLEG00000024016) #17 TRRAP (ENSMLEG00000020926) #18 SMURF1 (ENSMLEG00000041278) #19 KPNA7 (ENSMLEG00000041680) #20 ENSMLEG00000036464 ARPC1A (ENSMLEG00000031614) #21 ENSMLEG00000041405 #22 ENSMLEG00000031168 #22 ENSMLEG00000029041 #23 BUD31 (ENSMLEG00000035118) #24 PTCD1 (ENSMLEG00000031179) CPSF4 (ENSMLEG00000034721) #26 ATP5MF (ENSMLEG00000043000) #27 ZNF394 (ENSMLEG00000040037) #28 ZNF789 (ENSMLEG00000041142) ZKSCAN5 (ENSMLEG00000034683) #30 FAM200A (ENSMLEG00000001071) ZNF655 (ENSMLEG00000041871) #31 TMEM225B (ENSMLEG00000037236) ZSCAN25 (ENSMLEG00000006141) #32 CYP3A5 (ENSMLEG00000042908) ##34 CYP3A67 (ENSMLEG00000035821) ##34 CYP3A7 (ENSMLEG00000042648) ##34 Macaca ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713.c.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.a.b #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.c.b ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##34 Macaca_a ANCESTRAL SPECIES 7 ENSGT00940000158475 #10 ENSGT00510000047886.a #12 ENSGT00940000167990.a ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT01100000263539.b.a.a.a.a.b.a.b.b.a.d.a ENSGT00950000183188.A.b #17 ENSGT01080000257579.b.b.b.a.b ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT01100000263539.b.a.a.a.a.a.a.a.b.b.b.a.b.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.b #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##34 ENSGT00950000182958.a.b.b.i.b.b.c.a ##34 Crab-eating macaque MODERN SPECIES 13 ENSMFAG00000047484 #9 ENSMFAG00000059369 ENSMFAG00000049779 ENSMFAG00000036994 BAIAP2L1 (ENSMFAG00000037269) #14 NPTX2 (ENSMFAG00000039583) #16 ENSMFAG00000047721 TMEM130 (ENSMFAG00000040311) #17 ENSMFAG00000063130 TRRAP (ENSMFAG00000039475) #18 SMURF1 (ENSMFAG00000033436) #19 KPNA7 (ENSMFAG00000031709) #20 ENSMFAG00000062641 ENSMFAG00000052918 ARPC1A (ENSMFAG00000003138) #21 ARPC1B (ENSMFAG00000046299) #22 ENSMFAG00000053643 ENSMFAG00000003092 #23 BUD31 (ENSMFAG00000035579) #24 PTCD1 (ENSMFAG00000041324) ENSMFAG00000051467 CPSF4 (ENSMFAG00000001462) #26 ENSMFAG00000036062 #27 ZNF789 (ENSMFAG00000041302) ZNF394 (ENSMFAG00000045342) #28 ZKSCAN5 (ENSMFAG00000037519) #30 FAM200A (ENSMFAG00000030317) ZNF655 (ENSMFAG00000037712) #31 TMEM225B (ENSMFAG00000045372) ZSCAN25 (ENSMFAG00000046015) #32 ENSMFAG00000054128 Pig-tailed macaque MODERN SPECIES 80 ENSMNEG00000034328 #7 ENSMNEG00000031130 #8 ENSMNEG00000036828 #9 LMTK2 (ENSMNEG00000038154) #10 BHLHA15 (ENSMNEG00000021350) #11 TECPR1 (ENSMNEG00000039715) #12 BRI3 (ENSMNEG00000000029) #13 BAIAP2L1 (ENSMNEG00000027564) #14 NPTX2 (ENSMNEG00000031035) #16 TMEM130 (ENSMNEG00000034143) #17 TRRAP (ENSMNEG00000011245) #18 SMURF1 (ENSMNEG00000030527) #19 KPNA7 (ENSMNEG00000043325) #20 ENSMNEG00000043344 ARPC1A (ENSMNEG00000045309) #21 ARPC1B (ENSMNEG00000032941) #22 ENSMNEG00000038469 #23 BUD31 (ENSMNEG00000034239) #24 PTCD1 (ENSMNEG00000043786) CPSF4 (ENSMNEG00000032306) #26 ENSMNEG00000044753 #27 ZNF394 (ENSMNEG00000044404) #28 ZNF789 (ENSMNEG00000034945) ZKSCAN5 (ENSMNEG00000036993) #30 FAM200A (ENSMNEG00000009524) ZNF655 (ENSMNEG00000032786) #31 TMEM225B (ENSMNEG00000039756) ZSCAN25 (ENSMNEG00000026859) #32 CYP3A5 (ENSMNEG00000029025) ##34 ENSMNEG00000019082 ##34 CYP3A4 (ENSMNEG00000031776) ##34 Hominoidea ANCESTRAL SPECIES 6 ENSGT00940000154303.B ENSGT00390000004713.d #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a ENSGT00950000182958.a.b.b.i.b.a ##34 Gibbon MODERN SPECIES 7 ENSNLEG00000035464 LMTK2 (ENSNLEG00000010627) #10 ENSNLEG00000027958 BHLHA15 (ENSNLEG00000018875) #11 TECPR1 (ENSNLEG00000010642) #12 ENSNLEG00000012944 ENSNLEG00000035321 #13 BAIAP2L1 (ENSNLEG00000033877) #14 ENSNLEG00000010697 #16 TMEM130 (ENSNLEG00000010699) #17 TRRAP (ENSNLEG00000027081) #18 SMURF1 (ENSNLEG00000010717) #19 KPNA7 (ENSNLEG00000010827) #20 ENSNLEG00000032444 ARPC1A (ENSNLEG00000010852) #21 ENSNLEG00000026790 #22 PDAP1 (ENSNLEG00000011017) #23 BUD31 (ENSNLEG00000011020) #24 PTCD1 (ENSNLEG00000011060) ENSNLEG00000011100 CPSF4 (ENSNLEG00000011074) #26 ATP5MF (ENSNLEG00000011101) #27 ZNF789 (ENSNLEG00000011123) ZNF394 (ENSNLEG00000035314) #28 ZKSCAN5 (ENSNLEG00000011141) #30 FAM200A (ENSNLEG00000011174) ZNF655 (ENSNLEG00000030892) #31 TMEM225B (ENSNLEG00000011185) ZSCAN25 (ENSNLEG00000029330) #32 ENSNLEG00000032867 CYP3A5 (ENSNLEG00000035706) ##34 Hominidae ANCESTRAL SPECIES 26 ENSGT00940000155974.i.a ENSGT00390000004713.d #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a ENSGT00950000182958.a.b.b.i.b.a ##34 Homo/Pan/Gorilla group ANCESTRAL SPECIES 15 ENSGT00390000004713.d.a #8 ENSGT00940000161875.c.b #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a ENSGT00950000182958.a.b.b.i.b.a ##34 Homo/Pan group ANCESTRAL SPECIES 15 ENSGT00390000004713.d.a #8 ENSGT00940000161875.c.b #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a ENSGT00950000182958.a.b.b.i.b.a ##34 Pan ANCESTRAL SPECIES 13 ENSGT00390000001994.u ENSGT00390000004713.d.a #8 ENSGT00940000161875.c.b #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a ENSGT00950000182958.a.b.b.i.b.a ##34 Bonobo MODERN SPECIES 20 TAC1 (ENSPPAG00000033152) ASNS (ENSPPAG00000033201) ENSPPAG00000027488 #8 LMTK2 (ENSPPAG00000032735) #10 BHLHA15 (ENSPPAG00000038305) #11 TECPR1 (ENSPPAG00000036532) #12 ENSPPAG00000031565 #13 BAIAP2L1 (ENSPPAG00000037144) #14 ENSPPAG00000032935 #16 TMEM130 (ENSPPAG00000016661) #17 TRRAP (ENSPPAG00000036292) #18 SMURF1 (ENSPPAG00000031727) #19 KPNA7 (ENSPPAG00000040756) #20 ENSPPAG00000032160 ARPC1A (ENSPPAG00000032222) #21 ARPC1B (ENSPPAG00000029449) #22 PDAP1 (ENSPPAG00000031378) #23 BUD31 (ENSPPAG00000040700) #24 PTCD1 (ENSPPAG00000036024) CPSF4 (ENSPPAG00000043355) #26 ENSPPAG00000042587 ATP5MF (ENSPPAG00000036976) #27 ZNF789 (ENSPPAG00000040508) ZNF394 (ENSPPAG00000036746) #28 ZKSCAN5 (ENSPPAG00000035814) #30 FAM200A (ENSPPAG00000025979) ZNF655 (ENSPPAG00000041610) #31 TMEM225B (ENSPPAG00000040983) ZSCAN25 (ENSPPAG00000043285) #32 ENSPPAG00000035255 CYP3A5 (ENSPPAG00000038928) ##34 Chimpanzee MODERN SPECIES 20 ENSPTRG00000046532 #8 OCM2 (ENSPTRG00000019432) #9 LMTK2 (ENSPTRG00000019433) #10 BHLHA15 (ENSPTRG00000019434) #11 TECPR1 (ENSPTRG00000028478) #12 BRI3 (ENSPTRG00000019436) #13 BAIAP2L1 (ENSPTRG00000019438) #14 ENSPTRG00000049708 NPTX2 (ENSPTRG00000019440) #16 TMEM130 (ENSPTRG00000045055) #17 TRRAP (ENSPTRG00000019442) #18 SMURF1 (ENSPTRG00000019444) #19 KPNA7 (ENSPTRG00000019446) #20 MYH16 (ENSPTRG00000052047) ARPC1A (ENSPTRG00000033819) #21 ARPC1B (ENSPTRG00000019449) #22 PDAP1 (ENSPTRG00000041711) #23 BUD31 (ENSPTRG00000019451) #24 PTCD1 (ENSPTRG00000019452) CPSF4 (ENSPTRG00000019453) #26 ENSPTRG00000046696 ATP5MF (ENSPTRG00000044099) #27 ZNF789 (ENSPTRG00000023303) ZNF394 (ENSPTRG00000019456) #28 ZKSCAN5 (ENSPTRG00000019455) #30 FAM200A (ENSPTRG00000042511) ZNF655 (ENSPTRG00000048790) #31 TMEM225B (ENSPTRG00000043828) ZSCAN25 (ENSPTRG00000023744) #32 ENSPTRG00000047408 CYP3A5 (ENSPTRG00000019458) ##34 Human MODERN SPECIES 19 TAC1 (ENSG00000006128) ASNS (ENSG00000070669) OCM2 (ENSG00000135175) #9 LMTK2 (ENSG00000164715) #10 BHLHA15 (ENSG00000180535) #11 TECPR1 (ENSG00000205356) #12 BRI3 (ENSG00000164713) #13 BAIAP2L1 (ENSG00000006453) #14 NPTX2 (ENSG00000106236) #16 TMEM130 (ENSG00000166448) #17 TRRAP (ENSG00000196367) #18 SMURF1 (ENSG00000198742) #19 KPNA7 (ENSG00000185467) #20 ENSG00000284292 ARPC1A (ENSG00000241685) #21 ARPC1B (ENSG00000130429) #22 PDAP1 (ENSG00000106244) #23 BUD31 (ENSG00000106245) #24 PTCD1 (ENSG00000106246) ATP5MF-PTCD1 (ENSG00000248919) CPSF4 (ENSG00000160917) #26 ATP5MF (ENSG00000241468) #27 ZNF789 (ENSG00000198556) ZNF394 (ENSG00000160908) #28 ZKSCAN5 (ENSG00000196652) #30 FAM200A (ENSG00000221909) ZNF655 (ENSG00000197343) #31 TMEM225B (ENSG00000244219) ZSCAN25 (ENSG00000197037) #32 CYP3A5 (ENSG00000106258) ##34 CYP3A7-CYP3A51P (ENSG00000282301) Gorilla MODERN SPECIES 20 ENSGGOG00000038206 #8 OCM2 (ENSGGOG00000022595) #9 LMTK2 (ENSGGOG00000003052) #10 TECPR1 (ENSGGOG00000003065) #12 ENSGGOG00000009646 #13 BAIAP2L1 (ENSGGOG00000022920) #14 ENSGGOG00000023648 NPTX2 (ENSGGOG00000014713) #16 TMEM130 (ENSGGOG00000016665) #17 TRRAP (ENSGGOG00000002928) #18 SMURF1 (ENSGGOG00000011481) #19 KPNA7 (ENSGGOG00000000414) #20 ENSGGOG00000016797 ENSGGOG00000036592 #21 ARPC1A (ENSGGOG00000039217) #21 ARPC1B (ENSGGOG00000013186) #22 PDAP1 (ENSGGOG00000025196) #23 BUD31 (ENSGGOG00000015119) #24 ENSGGOG00000041309 PTCD1 (ENSGGOG00000015123) CPSF4 (ENSGGOG00000015131) #26 ATP5MF (ENSGGOG00000037236) #27 ENSGGOG00000022768 ZNF394 (ENSGGOG00000013650) #28 ZKSCAN5 (ENSGGOG00000009555) #30 FAM200A (ENSGGOG00000001350) ZNF655 (ENSGGOG00000002488) #31 TMEM225B (ENSGGOG00000040673) ZSCAN25 (ENSGGOG00000016950) #32 CYP3A5 (ENSGGOG00000003875) ##34 ENSGGOG00000043492 ##34 Orangutan MODERN SPECIES 20 ZNF853 (ENSPPYG00000040545) ZNF316 (ENSPPYG00000033506) ZNF12 (ENSPPYG00000030303) ENSPPYG00000017340 #9 LMTK2 (ENSPPYG00000017360) #10 BHLHA15 (ENSPPYG00000017361) #11 TECPR1 (ENSPPYG00000017362) #12 ENSPPYG00000037940 #13 BAIAP2L1 (ENSPPYG00000017363) #14 NPTX2 (ENSPPYG00000029795) #16 TMEM130 (ENSPPYG00000017365) #17 TRRAP (ENSPPYG00000017366) #18 SMURF1 (ENSPPYG00000017368) #19 KPNA7 (ENSPPYG00000017369) #20 ARPC1A (ENSPPYG00000025816) #21 ARPC1B (ENSPPYG00000017374) #22 ENSPPYG00000017375 #23 BUD31 (ENSPPYG00000017376) #24 PTCD1 (ENSPPYG00000017377) CPSF4 (ENSPPYG00000017378) #26 ENSPPYG00000041797 ATP5MF (ENSPPYG00000017379) #27 ZNF789 (ENSPPYG00000041347) ZNF394 (ENSPPYG00000017381) #28 ZKSCAN5 (ENSPPYG00000017382) #30 FAM200A (ENSPPYG00000017383) ZNF655 (ENSPPYG00000017384) #31 TMEM225B (ENSPPYG00000033654) ZSCAN25 (ENSPPYG00000034484) #32 CYP3A5 (ENSPPYG00000034419) ##34 CYP3A7 (ENSPPYG00000032198) ##34 Laurasiatheria ANCESTRAL SPECIES 10 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j #34 Eulipotyphla ANCESTRAL SPECIES 1974 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 Common shrew MODERN SPECIES 2047 ARPC1B (ENSSARG00000011699) #22 ENSSARG00000011708 #23 Laurasiatheria_a ANCESTRAL SPECIES 12 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Artiodactyla ANCESTRAL SPECIES 10 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Artiodactyla_a ANCESTRAL SPECIES 10 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Camelidae ANCESTRAL SPECIES 24 ENSGT00940000157605 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.l.a #34 ENSGT01090000260018.B.b ENSGT00940000163330 Arabian camel MODERN SPECIES 9 AIMP2 (ENSCDRG00005014622) PMS2 (ENSCDRG00005014320) ENSCDRG00005014255 #7 ENSCDRG00005014080 #8 ENSCDRG00005014012 #9 LMTK2 (ENSCDRG00005013925) #10 TECPR1 (ENSCDRG00005013716) #12 BRI3 (ENSCDRG00005013667) #13 BAIAP2L1 (ENSCDRG00005013606) #14 NPTX2 (ENSCDRG00005013554) #16 TMEM130 (ENSCDRG00005013368) #17 ENSCDRG00005013327 #18 ENSCDRG00005012884 #18 SMURF1 (ENSCDRG00005012771) #19 KPNA7 (ENSCDRG00005012622) #20 ARPC1B (ENSCDRG00005012372) #22 PDAP1 (ENSCDRG00005012264) #23 BUD31 (ENSCDRG00005012145) #24 PTCD1 (ENSCDRG00005011961) CPSF4 (ENSCDRG00005011554) #26 ENSCDRG00005011410 #27 ENSCDRG00005011387 ZNF394 (ENSCDRG00005011366) #28 ZKSCAN5 (ENSCDRG00005011297) #30 ZNF789 (ENSCDRG00005011225) ZNF655 (ENSCDRG00005011089) #31 ENSCDRG00005011047 TMEM225B (ENSCDRG00005011012) ZSCAN25 (ENSCDRG00005010978) #32 ENSCDRG00005010875 #34 ENSCDRG00005010827 Artiodactyla_b ANCESTRAL SPECIES 9 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Pecora ANCESTRAL SPECIES 10 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200.a ENSGT00940000162113 #32 Percora_a ANCESTRAL SPECIES 9 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200.a ENSGT00940000162113 #32 Bovidae ANCESTRAL SPECIES 11 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200.a ENSGT00940000162113 #32 Bovinae DUPLICATION Bovinae ANCESTRAL SPECIES 7 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a ENSGT00940000162113 #32 ENSGT00940000165702 Bos ANCESTRAL SPECIES 9 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a ENSGT00940000162113 #32 Bos_b ANCESTRAL SPECIES 6 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a ENSGT00940000162113 #32 ENSGT00940000165702 Hybrid Bos Indicus MODERN SPECIES 17 PMS2 (ENSBIXG00005002516) ENSBIXG00005015885 #7 ENSBIXG00005015615 #8 ENSBIXG00005015523 #9 LMTK2 (ENSBIXG00005002294) #10 BAIAP2L1 (ENSBIXG00005015423) #14 BHLHA15 (ENSBIXG00005015363) #11 TECPR1 (ENSBIXG00005015345) #12 BRI3 (ENSBIXG00005015306) #13 NPTX2 (ENSBIXG00005015270) #16 TMEM130 (ENSBIXG00005015225) #17 TRRAP (ENSBIXG00005015045) #18 SMURF1 (ENSBIXG00005005409) #19 KPNA7 (ENSBIXG00005014735) #20 ENSBIXG00005002057 #21 ENSBIXG00005014625 #22 PDAP1 (ENSBIXG00005014563) #23 BUD31 (ENSBIXG00005014534) #24 PTCD1 (ENSBIXG00005014503) CPSF4 (ENSBIXG00005014471) #26 ENSBIXG00005014397 #27 ENSBIXG00005014375 ENSBIXG00005001905 ENSBIXG00005014311 ZKSCAN5 (ENSBIXG00005001885) #30 ENSBIXG00005014283 ZNF789 (ENSBIXG00005014273) FAM200A (ENSBIXG00005014258) ZNF655 (ENSBIXG00005014236) #31 ENSBIXG00005014180 ENSBIXG00005014162 Cow MODERN SPECIES 17 PMS2 (ENSBTAG00000007364) RSPH10B (ENSBTAG00000005908) #7 CCZ1 (ENSBTAG00000003288) #8 ENSBTAG00000046943 #9 LMTK2 (ENSBTAG00000004135) #10 BHLHA15 (ENSBTAG00000046010) #11 TECPR1 (ENSBTAG00000051678) #12 BRI3 (ENSBTAG00000022825) #13 BAIAP2L1 (ENSBTAG00000019181) #14 NPTX2 (ENSBTAG00000045896) #16 TMEM130 (ENSBTAG00000005679) #17 TRRAP (ENSBTAG00000007113) #18 SMURF1 (ENSBTAG00000007118) #19 KPNA7 (ENSBTAG00000015737) #20 ARPC1A (ENSBTAG00000004242) #21 ARPC1B (ENSBTAG00000046248) #22 PDAP1 (ENSBTAG00000044040) #23 BUD31 (ENSBTAG00000020439) #24 PTCD1 (ENSBTAG00000020440) CPSF4 (ENSBTAG00000002090) #26 ATP5MF (ENSBTAG00000002094) #27 ZNF394 (ENSBTAG00000016190) #28 ENSBTAG00000053161 ZKSCAN5 (ENSBTAG00000049731) #30 ENSBTAG00000048341 ZNF789 (ENSBTAG00000047572) FAM200A (ENSBTAG00000051481) ZNF655 (ENSBTAG00000030951) #31 TMEM225B (ENSBTAG00000039720) ZSCAN25 (ENSBTAG00000039512) #32 CYP3A24 (ENSBTAG00000054260) #34 Bos_a ANCESTRAL SPECIES 35 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.b.a #21 ENSGT00950000183183.b.a.q.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a ENSGT00940000162113 #32 Domestic yak MODERN SPECIES 18 ENSBGRG00000025431 #8 ENSBGRG00000025381 #9 LMTK2 (ENSBGRG00000025270) #10 BHLHA15 (ENSBGRG00000025237) #11 TECPR1 (ENSBGRG00000025127) #12 BRI3 (ENSBGRG00000025097) #13 BAIAP2L1 (ENSBGRG00000025058) #14 NPTX2 (ENSBGRG00000025022) #16 TMEM130 (ENSBGRG00000024946) #17 TRRAP (ENSBGRG00000024841) #18 ENSBGRG00000024800 SMURF1 (ENSBGRG00000024646) #19 KPNA7 (ENSBGRG00000024547) #20 ENSBGRG00000024515 #21 ENSBGRG00000024499 #21 ENSBGRG00000024483 #22 PDAP1 (ENSBGRG00000024415) #23 BUD31 (ENSBGRG00000024361) #24 PTCD1 (ENSBGRG00000024303) CPSF4 (ENSBGRG00000024142) #26 ENSBGRG00000024105 #27 ENSBGRG00000024073 ENSBGRG00000024059 ZNF394 (ENSBGRG00000024040) #28 ZKSCAN5 (ENSBGRG00000024023) #30 ENSBGRG00000024016 ZNF789 (ENSBGRG00000023983) FAM200A (ENSBGRG00000023967) ZNF655 (ENSBGRG00000023838) #31 ENSBGRG00000023765 ZSCAN25 (ENSBGRG00000023712) #32 Wild yak MODERN SPECIES 538 ENSBMUG00000023044 #21 ENSBMUG00000023068 #22 PDAP1 (ENSBMUG00000023105) #23 BUD31 (ENSBMUG00000023129) #24 PTCD1 (ENSBMUG00000023153) CPSF4 (ENSBMUG00000023198) #26 ENSBMUG00000023216 #27 ENSBMUG00000023229 ZNF394 (ENSBMUG00000023235) #28 ENSBMUG00000023244 ENSBMUG00000023259 #30 ZNF789 (ENSBMUG00000023267) FAM200A (ENSBMUG00000023277) ZNF655 (ENSBMUG00000023339) #31 ENSBMUG00000023294 TMEM225B (ENSBMUG00000023356) ZSCAN25 (ENSBMUG00000023364) #32 American bison MODERN SPECIES 3140 PMS2 (ENSBBBG00000001701) ENSBBBG00000006928 #7 ENSBBBG00000010103 #8 ENSBBBG00000010109 #9 LMTK2 (ENSBBBG00000010132) #10 BHLHA15 (ENSBBBG00000010137) #11 BRI3 (ENSBBBG00000010143) #13 ENSBBBG00000001713 BAIAP2L1 (ENSBBBG00000010154) #14 NPTX2 (ENSBBBG00000001718) #16 TMEM130 (ENSBBBG00000010173) #17 TRRAP (ENSBBBG00000000060) #18 SMURF1 (ENSBBBG00000010293) #19 KPNA7 (ENSBBBG00000001770) #20 ENSBBBG00000008539 #21 ENSBBBG00000010343 #22 PDAP1 (ENSBBBG00000010357) #23 BUD31 (ENSBBBG00000010369) #24 PTCD1 (ENSBBBG00000010388) CPSF4 (ENSBBBG00000010423) #26 ENSBBBG00000010437 #27 ZNF394 (ENSBBBG00000010440) #28 ZKSCAN5 (ENSBBBG00000001814) #30 ZNF789 (ENSBBBG00000010449) ZNF655 (ENSBBBG00000010475) #31 ENSBBBG00000001826 ZSCAN25 (ENSBBBG00000010489) #32 ENSBBBG00000001832 ENSBBBG00000010568 #34 ENSBBBG00000007021 #34 ENSBBBG00000001861 #34 Bovinae ANCESTRAL SPECIES 29 ENSGT00940000154925.j ENSGT00950000183159.b ENSGT00940000161074.a ENSGT00390000015700.a ENSGT00390000010065 ENSGT00940000159395 ENSGT00940000155756 ENSGT00530000063872.B ENSGT00390000017860.a.b ENSGT01100000263512.a.a.a.b ENSGT00940000162154 ENSGT00390000013512 ENSGT00510000046929.a ENSGT00390000012721.b ENSGT00950000183055.a.a ENSGT00950000183183.b.b.n #22 ENSGT00950000183375 ENSGT00940000153362.a.cb.a.b ENSGT00940000159810 ENSGT00940000160718 ENSGT00390000009902.o ENSGT00940000158453.a ENSGT01050000244955.a.a ENSGT01050000244897.a.b.b.a.b ENSGT01050000244897.a.b.b.b ENSGT00940000155186.t.d ENSGT00940000156856 ENSGT00940000159196 ENSGT00940000153981.A ENSGT00940000162795 ENSGT00940000153931.a.a Bos ANCESTRAL SPECIES 28 ENSGT00950000183159.b ENSGT00940000161074.a ENSGT00390000003420.a.b.v.a ENSGT00390000015700.a ENSGT00390000010065 ENSGT00940000159395 ENSGT00940000155756 ENSGT00530000063872.B ENSGT00390000017860.a.b ENSGT01100000263512.a.a.a.b ENSGT00940000162154 ENSGT00390000013512 ENSGT00510000046929.a ENSGT00390000012721.b ENSGT00950000183055.a.a ENSGT00950000183183.b.b.n #22 ENSGT00950000183375 ENSGT00940000153362.a.cb.a.b.b ENSGT00940000159810 ENSGT00940000160718 ENSGT00390000009902.o ENSGT00940000158453.a ENSGT01050000244955.a.a ENSGT01050000244897.a.b.b.a.b ENSGT01050000244897.a.b.b.b ENSGT00940000155186.t.d ENSGT00940000156856 ENSGT00940000159196 ENSGT00940000153981.A ENSGT00940000162795 ENSGT00940000153931.a.a Bos_a ANCESTRAL SPECIES 19 ENSGT00940000161074.a ENSGT00390000003420.a.b.v.a ENSGT00390000015700.a ENSGT00390000010065 ENSGT00940000159395 ENSGT00940000155756 ENSGT00990000212850 ENSGT00530000063872.B ENSGT00390000017860.a.b ENSGT01100000263512.a.a.a.b ENSGT00940000162154 ENSGT00390000013512 ENSGT00510000046929.a ENSGT00390000012721.b ENSGT00950000183055.a.a ENSGT00950000183183.b.b.n #22 ENSGT00950000183375 ENSGT01100000263503.E.d.a.a.b.b.k.a ENSGT00730000111351 ENSGT00390000017146.b ENSGT00950000182950.B ENSGT01000000214889 ENSGT00940000157953 ENSGT00390000016480 ENSGT00940000161271 ENSGT00940000160889 ENSGT00940000159927 ENSGT01030000234579.B.b ENSGT00940000154652 ENSGT00390000001394 ENSGT00940000157453 Domestic yak MODERN SPECIES 6 KCTD12 (ENSBGRG00000003834) ACOD1 (ENSBGRG00000003776) CLN5 (ENSBGRG00000021575) FBXL3 (ENSBGRG00000021547) ENSBGRG00000021531 ENSBGRG00000021495 SCEL (ENSBGRG00000020490) SLAIN1 (ENSBGRG00000020350) EDNRB (ENSBGRG00000020314) POU4F1 (ENSBGRG00000020242) ENSBGRG00000020223 OBI1 (ENSBGRG00000020123) RBM26 (ENSBGRG00000019863) NDFIP2 (ENSBGRG00000019693) SPRY2 (ENSBGRG00000019613) ENSBGRG00000019588 #22 ENSBGRG00000019537 ENSBGRG00000019514 CHAMP1 (ENSBGRG00000019502) UPF3A (ENSBGRG00000019190) CDC16 (ENSBGRG00000018425) ENSBGRG00000018383 RASA3 (ENSBGRG00000017995) ENSBGRG00000017918 GAS6 (ENSBGRG00000017756) TMEM255B (ENSBGRG00000017560) GRK1 (ENSBGRG00000017415) ATP4B (ENSBGRG00000017325) TFDP1 (ENSBGRG00000017078) TMCO3 (ENSBGRG00000016679) ENSBGRG00000016617 Wild yak MODERN SPECIES 1975 SPRY2 (ENSBMUG00000016754) ENSBMUG00000016712 #22 Bos_b ANCESTRAL SPECIES 33 ENSGT00390000018141.i.a.a.a.a.b.a.a ENSGT00940000161074.a ENSGT00390000003420.a.b.v.a ENSGT00390000015700.a ENSGT00390000010065 ENSGT00940000159395 ENSGT00940000155756 ENSGT00530000063872.B ENSGT00390000017860.a.b ENSGT01100000263512.a.a.a.b ENSGT00940000162154 ENSGT00390000013512 ENSGT00510000046929.a ENSGT00390000012721.b ENSGT00950000183055.a.a ENSGT00950000183183.b.b.n #22 ENSGT00950000183375 ENSGT00940000153362.a.cb.a.b.b ENSGT00940000159810 ENSGT00940000160718 ENSGT00390000009902.o ENSGT00940000158453.a ENSGT00940000157437.cb ENSGT01050000244955.a.a ENSGT01050000244897.a.b.b.a.b ENSGT01050000244897.a.b.b.b ENSGT00940000155186.t.d ENSGT00940000156856 ENSGT00940000159196 ENSGT00940000153981.A ENSGT00940000162795 Cow MODERN SPECIES 3 ENSBTAG00000032878 KCTD12 (ENSBTAG00000001414) ENSBTAG00000054283 ACOD1 (ENSBTAG00000008259) CLN5 (ENSBTAG00000018846) FBXL3 (ENSBTAG00000018848) MYCBP2 (ENSBTAG00000018851) SCEL (ENSBTAG00000032821) SLAIN1 (ENSBTAG00000003511) EDNRB (ENSBTAG00000005299) POU4F1 (ENSBTAG00000051184) OBI1 (ENSBTAG00000000869) RBM26 (ENSBTAG00000017573) NDFIP2 (ENSBTAG00000014227) SPRY2 (ENSBTAG00000001774) ENSBTAG00000020684 #22 SLITRK1 (ENSBTAG00000038168) SLITRK6 (ENSBTAG00000004388) HTATSF1 (ENSBTAG00000032711) SLITRK5 (ENSBTAG00000010129) ENSBTAG00000051320 GPC5 (ENSBTAG00000008708) GPC6 (ENSBTAG00000040347) ENSBTAG00000054671 ENSBTAG00000051263 DCT (ENSBTAG00000002300) ENSBTAG00000051519 TGDS (ENSBTAG00000005309) GPR180 (ENSBTAG00000005310) SOX21 (ENSBTAG00000022484) ENSBTAG00000032603 Hybrid Bos Indicus MODERN SPECIES 3 ENSBIXG00005030605 KCTD12 (ENSBIXG00005030613) ENSBIXG00005030621 ACOD1 (ENSBIXG00005030632) CLN5 (ENSBIXG00005030640) FBXL3 (ENSBIXG00005030647) MYCBP2 (ENSBIXG00005030675) SCEL (ENSBIXG00005030770) SLAIN1 (ENSBIXG00005030824) EDNRB (ENSBIXG00005030835) POU4F1 (ENSBIXG00005030848) OBI1 (ENSBIXG00005030850) RBM26 (ENSBIXG00005030874) NDFIP2 (ENSBIXG00005030900) SPRY2 (ENSBIXG00005030925) ENSBIXG00005030943 #22 ENSBIXG00005030951 ENSBIXG00005030959 SLITRK1 (ENSBIXG00005030962) ENSBIXG00005030973 SLITRK6 (ENSBIXG00005029231) ENSBIXG00005001608 SLITRK5 (ENSBIXG00005001645) ENSBIXG00005029197 GPC5 (ENSBIXG00005001799) GPC6 (ENSBIXG00005001836) ENSBIXG00005005175 ENSBIXG00005005171 DCT (ENSBIXG00005029117) ENSBIXG00005001900 TGDS (ENSBIXG00005001934) American bison MODERN SPECIES 3268 ENSBBBG00000013910 ACOD1 (ENSBBBG00000003022) CLN5 (ENSBBBG00000003026) FBXL3 (ENSBBBG00000003030) MYCBP2 (ENSBBBG00000014029) SCEL (ENSBBBG00000014157) SLAIN1 (ENSBBBG00000014178) EDNRB (ENSBBBG00000014192) OBI1 (ENSBBBG00000003218) RBM26 (ENSBBBG00000014297) NDFIP2 (ENSBBBG00000003255) SPRY2 (ENSBBBG00000014320) ENSBBBG00000014338 #22 ENSBBBG00000003271 Caprinae ANCESTRAL SPECIES 7 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b.a.a.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.y #27 ENSGT00940000154488.A.b.a.b ENSGT00510000046986.x.a.d #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200.a ENSGT00940000162113 #32 ENSGT00940000165702 Goat MODERN SPECIES 17 PMS2 (ENSCHIG00000017062) ENSCHIG00000021579 #7 ENSCHIG00000016566 #8 ENSCHIG00000026637 #9 LMTK2 (ENSCHIG00000023995) #10 BHLHA15 (ENSCHIG00000008225) #11 TECPR1 (ENSCHIG00000025300) #12 BRI3 (ENSCHIG00000005545) #13 BAIAP2L1 (ENSCHIG00000003641) #14 NPTX2 (ENSCHIG00000016145) #16 TMEM130 (ENSCHIG00000025196) #17 TRRAP (ENSCHIG00000025236) #18 SMURF1 (ENSCHIG00000017881) #19 KPNA7 (ENSCHIG00000026332) #20 ENSCHIG00000013674 #21 ARPC1B (ENSCHIG00000021068) #22 PDAP1 (ENSCHIG00000024190) #23 BUD31 (ENSCHIG00000015455) #24 PTCD1 (ENSCHIG00000027000) CPSF4 (ENSCHIG00000014313) #26 ENSCHIG00000021771 #27 ENSCHIG00000005075 ZNF394 (ENSCHIG00000016834) #28 ZKSCAN5 (ENSCHIG00000024258) #30 ZNF789 (ENSCHIG00000013695) ZNF655 (ENSCHIG00000025621) #31 ENSCHIG00000023445 TMEM225B (ENSCHIG00000014873) ZSCAN25 (ENSCHIG00000023626) #32 CYP3A24 (ENSCHIG00000012426) #34 CYP3A76 (ENSCHIG00000022924) #34 Rambouillet Sheep MODERN SPECIES 16 AIMP2 (ENSOARG00020023890) PMS2 (ENSOARG00020023689) ENSOARG00020023637 #7 ENSOARG00020023544 #8 ENSOARG00020023523 #9 BHLHA15 (ENSOARG00020023426) #11 TECPR1 (ENSOARG00020023364) #12 BRI3 (ENSOARG00020023331) #13 BAIAP2L1 (ENSOARG00020023297) #14 NPTX2 (ENSOARG00020023277) #16 TMEM130 (ENSOARG00020023081) #17 TRRAP (ENSOARG00020022843) #18 SMURF1 (ENSOARG00020022545) #19 KPNA7 (ENSOARG00020022480) #20 ENSOARG00020022442 #21 ARPC1B (ENSOARG00020022406) #22 PDAP1 (ENSOARG00020022360) #23 BUD31 (ENSOARG00020022312) #24 CPSF4 (ENSOARG00020022199) #26 ENSOARG00020022141 #27 ZNF394 (ENSOARG00020022119) #28 ZKSCAN5 (ENSOARG00020022085) #30 ZNF789 (ENSOARG00020022053) ZNF655 (ENSOARG00020021933) #31 TMEM225B (ENSOARG00020021911) ZSCAN25 (ENSOARG00020021884) #32 ENSOARG00020021858 CYP3A24 (ENSOARG00020021603) #34 ENSOARG00020021338 #34 ENSOARG00020021224 #34 OR2AE1 (ENSOARG00020021194) Siberian musk deer MODERN SPECIES 1230 ENSMMSG00000015595 ENSMMSG00000015506 #7 ENSMMSG00000015402 #8 ENSMMSG00000015375 #9 LMTK2 (ENSMMSG00000015302) #10 BHLHA15 (ENSMMSG00000015278) #11 TECPR1 (ENSMMSG00000015173) #12 BRI3 (ENSMMSG00000015142) #13 BAIAP2L1 (ENSMMSG00000015095) #14 NPTX2 (ENSMMSG00000015078) #16 TMEM130 (ENSMMSG00000015018) #17 TRRAP (ENSMMSG00000014927) #18 SMURF1 (ENSMMSG00000014815) #19 ENSMMSG00000014765 #20 ENSMMSG00000014733 #21 ARPC1B (ENSMMSG00000014707) #22 PDAP1 (ENSMMSG00000014684) #23 BUD31 (ENSMMSG00000014656) #24 PTCD1 (ENSMMSG00000014637) CPSF4 (ENSMMSG00000014539) #26 ENSMMSG00000014510 #27 ZNF394 (ENSMMSG00000014499) #28 ZKSCAN5 (ENSMMSG00000014471) #30 ZNF789 (ENSMMSG00000014456) ZNF655 (ENSMMSG00000014427) #31 TMEM225B (ENSMMSG00000014403) ZSCAN25 (ENSMMSG00000014381) #32 ENSMMSG00000014367 ENSMMSG00000014350 ENSMMSG00000014257 #34 ENSMMSG00000013676 #34 Yarkand deer MODERN SPECIES 1 PMS2 (ENSCHYG00000018507) ENSCHYG00000018095 #7 ENSCHYG00000017835 #8 ENSCHYG00000017762 #9 LMTK2 (ENSCHYG00000017591) #10 BHLHA15 (ENSCHYG00000017555) #11 TECPR1 (ENSCHYG00000017360) #12 BRI3 (ENSCHYG00000017314) #13 BAIAP2L1 (ENSCHYG00000017061) #14 NPTX2 (ENSCHYG00000016997) #16 TMEM130 (ENSCHYG00000016668) #17 TRRAP (ENSCHYG00000013971) #18 SMURF1 (ENSCHYG00000013359) #19 KPNA7 (ENSCHYG00000013180) #20 ENSCHYG00000013066 #21 ARPC1B (ENSCHYG00000012964) #22 PDAP1 (ENSCHYG00000012875) #23 BUD31 (ENSCHYG00000012781) #24 PTCD1 (ENSCHYG00000012720) CPSF4 (ENSCHYG00000012568) #26 ENSCHYG00000012401 #27 ENSCHYG00000012361 ZNF394 (ENSCHYG00000012317) #28 ZKSCAN5 (ENSCHYG00000012276) #30 ENSCHYG00000012259 ZNF789 (ENSCHYG00000012222) ZNF655 (ENSCHYG00000012070) #31 ENSCHYG00000012030 TMEM225B (ENSCHYG00000011916) ZSCAN25 (ENSCHYG00000011869) #32 ENSCHYG00000011123 #34 Cetacea ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.k.a #34 Odontoceti ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.k.a #34 Odontoceti_a ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.k.a #34 Odontoceti_b ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.k.a #34 Monodontidae ANCESTRAL SPECIES 1 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.k.a #34 Narwhal MODERN SPECIES 299 ENSMMNG00015003873 #7 ENSMMNG00015003818 #8 ENSMMNG00015003789 #9 LMTK2 (ENSMMNG00015003763) #10 BHLHA15 (ENSMMNG00015003745) #11 TECPR1 (ENSMMNG00015003675) #12 BRI3 (ENSMMNG00015003639) #13 BAIAP2L1 (ENSMMNG00015003589) #14 NPTX2 (ENSMMNG00015003563) #16 TMEM130 (ENSMMNG00015003509) #17 TRRAP (ENSMMNG00015003087) #18 SMURF1 (ENSMMNG00015002854) #19 KPNA7 (ENSMMNG00015002759) #20 ENSMMNG00015002693 ENSMMNG00015002635 #21 ARPC1B (ENSMMNG00015002613) #22 PDAP1 (ENSMMNG00015002587) #23 BUD31 (ENSMMNG00015002560) #24 PTCD1 (ENSMMNG00015002519) CPSF4 (ENSMMNG00015002457) #26 ENSMMNG00015002418 #27 ZNF394 (ENSMMNG00015002396) #28 ZKSCAN5 (ENSMMNG00015002368) #30 ZNF789 (ENSMMNG00015002337) FAM200A (ENSMMNG00015002312) ZNF655 (ENSMMNG00015002264) #31 ENSMMNG00015002225 TMEM225B (ENSMMNG00015002205) ZSCAN25 (ENSMMNG00015002179) #32 ENSMMNG00015002160 ENSMMNG00015002083 #34 Beluga whale MODERN SPECIES 48 ENSDLEG00000020481 ENSDLEG00000020475 #8 ENSDLEG00000020471 #9 LMTK2 (ENSDLEG00000020452) #10 BHLHA15 (ENSDLEG00000020448) #11 TECPR1 (ENSDLEG00000020413) #12 BRI3 (ENSDLEG00000020405) #13 BAIAP2L1 (ENSDLEG00000020393) #14 NPTX2 (ENSDLEG00000020388) #16 TMEM130 (ENSDLEG00000020386) #17 TRRAP (ENSDLEG00000016992) #18 SMURF1 (ENSDLEG00000016179) #19 KPNA7 (ENSDLEG00000016100) #20 ENSDLEG00000015938 ARPC1A (ENSDLEG00000015896) #21 ARPC1B (ENSDLEG00000015861) #22 PDAP1 (ENSDLEG00000015839) #23 BUD31 (ENSDLEG00000015820) #24 PTCD1 (ENSDLEG00000015782) CPSF4 (ENSDLEG00000015772) #26 ENSDLEG00000015761 #27 ZNF394 (ENSDLEG00000015750) #28 ZKSCAN5 (ENSDLEG00000015741) #30 ZNF789 (ENSDLEG00000015734) ZNF655 (ENSDLEG00000015709) #31 TMEM225B (ENSDLEG00000015693) ZSCAN25 (ENSDLEG00000015677) #32 ENSDLEG00000015665 #34 ENSDLEG00000015652 #34 ENSDLEG00000015622 #34 TRIM4 (ENSDLEG00000015596) Vaquita MODERN SPECIES 6 ENSPSNG00000013097 #7 ENSPSNG00000012850 #8 ENSPSNG00000012777 #9 LMTK2 (ENSPSNG00000012631) #10 BHLHA15 (ENSPSNG00000012595) #11 TECPR1 (ENSPSNG00000012533) #12 ENSPSNG00000012465 #13 BAIAP2L1 (ENSPSNG00000012292) #14 NPTX2 (ENSPSNG00000012212) #16 TMEM130 (ENSPSNG00000011895) #17 TRRAP (ENSPSNG00000011688) #18 SMURF1 (ENSPSNG00000011505) #19 KPNA7 (ENSPSNG00000011346) #20 ENSPSNG00000010917 ENSPSNG00000010796 #21 ARPC1B (ENSPSNG00000010674) #22 PDAP1 (ENSPSNG00000010590) #23 BUD31 (ENSPSNG00000010482) #24 PTCD1 (ENSPSNG00000010406) CPSF4 (ENSPSNG00000010306) #26 ENSPSNG00000010232 #27 ZNF394 (ENSPSNG00000010193) #28 ZKSCAN5 (ENSPSNG00000010150) #30 ZNF789 (ENSPSNG00000010094) FAM200A (ENSPSNG00000010058) ZNF655 (ENSPSNG00000009816) #31 TMEM225B (ENSPSNG00000013751) ZSCAN25 (ENSPSNG00000013706) #32 ENSPSNG00000013187 #34 ENSPSNG00000012402 #34 TRIM4 (ENSPSNG00000012189) Dolphin MODERN SPECIES 2531 TRRAP (ENSTTRG00000002957) #18 ENSTTRG00000002991 SMURF1 (ENSTTRG00000002994) #19 KPNA7 (ENSTTRG00000002998) #20 ENSTTRG00000003000 ARPC1A (ENSTTRG00000003002) #21 ARPC1B (ENSTTRG00000003003) #22 PDAP1 (ENSTTRG00000003004) #23 BUD31 (ENSTTRG00000003005) #24 PTCD1 (ENSTTRG00000003006) CPSF4 (ENSTTRG00000003007) #26 ATP5MF (ENSTTRG00000003008) #27 Sperm whale MODERN SPECIES 215 ARPC1B (ENSPCTG00005015411) #22 PDAP1 (ENSPCTG00005015297) #23 BUD31 (ENSPCTG00005015188) #24 PTCD1 (ENSPCTG00005015145) CPSF4 (ENSPCTG00005014992) #26 ATP5MF (ENSPCTG00005014816) #27 Blue whale MODERN SPECIES 6 PMS2 (ENSBMSG00010016204) ENSBMSG00010016031 #8 ENSBMSG00010015991 #9 LMTK2 (ENSBMSG00010015958) #10 BHLHA15 (ENSBMSG00010015945) #11 TECPR1 (ENSBMSG00010015935) #12 ENSBMSG00010015916 BAIAP2L1 (ENSBMSG00010015891) #14 NPTX2 (ENSBMSG00010015873) #16 TMEM130 (ENSBMSG00010015649) #17 TRRAP (ENSBMSG00010014624) #18 SMURF1 (ENSBMSG00010014386) #19 KPNA7 (ENSBMSG00010014304) #20 ENSBMSG00010014169 ENSBMSG00010014113 #21 ARPC1B (ENSBMSG00010014056) #22 PDAP1 (ENSBMSG00010014018) #23 ENSBMSG00010013970 #24 PTCD1 (ENSBMSG00010013917) ENSBMSG00010012551 #26 ENSBMSG00010012514 #27 ENSBMSG00010012488 ZNF394 (ENSBMSG00010012476) #28 ZKSCAN5 (ENSBMSG00010012465) #30 ENSBMSG00010012445 FAM200A (ENSBMSG00010012436) ZNF655 (ENSBMSG00010012412) #31 TMEM225B (ENSBMSG00010012383) ZSCAN25 (ENSBMSG00010012378) #32 ENSBMSG00010012316 #34 ENSBMSG00010012280 #34 Suina ANCESTRAL SPECIES 46 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.k.a.c #34 ENSGT00950000182958.a.b.b.j.k.b #34 Chacoan peccary MODERN SPECIES 833 ENSCWAG00000010359 #7 ENSCWAG00000010481 #8 ENSCWAG00000010569 #9 LMTK2 (ENSCWAG00000010619) #10 BHLHA15 (ENSCWAG00000010732) #11 TECPR1 (ENSCWAG00000010756) #12 BRI3 (ENSCWAG00000010841) #13 BAIAP2L1 (ENSCWAG00000010874) #14 NPTX2 (ENSCWAG00000010978) #16 TMEM130 (ENSCWAG00000011040) #17 TRRAP (ENSCWAG00000011543) #18 SMURF1 (ENSCWAG00000011777) #19 KPNA7 (ENSCWAG00000011846) #20 ENSCWAG00000011967 ARPC1A (ENSCWAG00000012355) #21 ARPC1B (ENSCWAG00000012397) #22 PDAP1 (ENSCWAG00000012444) #23 BUD31 (ENSCWAG00000012494) #24 PTCD1 (ENSCWAG00000012549) CPSF4 (ENSCWAG00000012575) #26 ENSCWAG00000012721 #27 ENSCWAG00000012841 #28 ZKSCAN5 (ENSCWAG00000012872) #30 ZNF789 (ENSCWAG00000012955) FAM200A (ENSCWAG00000012995) ZNF655 (ENSCWAG00000013035) #31 TMEM225B (ENSCWAG00000013216) ZSCAN25 (ENSCWAG00000013260) #32 ENSCWAG00000013302 ENSCWAG00000013404 #34 ENSCWAG00000015518 #34 Pig MODERN SPECIES 11 AIMP2 (ENSSSCG00000024245) PMS2 (ENSSSCG00000007590) ENSSSCG00000007589 #7 ENSSSCG00000025940 #8 ENSSSCG00000007596 #9 LMTK2 (ENSSSCG00000007599) #10 BHLHA15 (ENSSSCG00000038489) #11 TECPR1 (ENSSSCG00000007601) #12 BRI3 (ENSSSCG00000037605) #13 BAIAP2L1 (ENSSSCG00000007602) #14 NPTX2 (ENSSSCG00000007603) #16 TMEM130 (ENSSSCG00000007605) #17 TRRAP (ENSSSCG00000007606) #18 SMURF1 (ENSSSCG00000030153) #19 KPNA7 (ENSSSCG00000007607) #20 ARPC1B (ENSSSCG00000007625) #22 ENSSSCG00000035534 ARPC1A (ENSSSCG00000007609) #21 PDAP1 (ENSSSCG00000033450) #23 BUD31 (ENSSSCG00000007623) #24 PTCD1 (ENSSSCG00000007622) CPSF4 (ENSSSCG00000026896) #26 ENSSSCG00000034019 #27 ZNF394 (ENSSSCG00000036665) #28 ZKSCAN5 (ENSSSCG00000031809) #30 ZNF789 (ENSSSCG00000007618) FAM200A (ENSSSCG00000029175) ZNF655 (ENSSSCG00000007617) #31 ENSSSCG00000031485 TMEM225B (ENSSSCG00000043842) ZSCAN25 (ENSSSCG00000039842) #32 Laurasiatheria_b ANCESTRAL SPECIES 12 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00940000154740.a.a.c.b ENSGT00940000165768 ENSGT00510000055200 Laurasiatheria_c ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Chiroptera ANCESTRAL SPECIES 37 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Microchiroptera ANCESTRAL SPECIES 39 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Microbat MODERN SPECIES 937 ALDH7A1 (ENSMLUG00000002944) ENSMLUG00000000184 LMNB1 (ENSMLUG00000009721) MARCHF3 (ENSMLUG00000009747) C5orf63 (ENSMLUG00000002467) MEGF10 (ENSMLUG00000010818) PRRC1 (ENSMLUG00000010866) CTXN3 (ENSMLUG00000009416) SLC12A2 (ENSMLUG00000008327) FBN2 (ENSMLUG00000008374) SLC27A6 (ENSMLUG00000011142) ISOC1 (ENSMLUG00000023846) ENSMLUG00000029686 ENSMLUG00000010877 ARPC1A (ENSMLUG00000010912) #21 ARPC1B (ENSMLUG00000010933) #22 PDAP1 (ENSMLUG00000010959) #23 BUD31 (ENSMLUG00000010973) #24 CPSF4 (ENSMLUG00000010980) #26 PTCD1 (ENSMLUG00000010994) ZNF789 (ENSMLUG00000017347) ENSMLUG00000017348 #28 ENSMLUG00000017349 ENSMLUG00000017351 TMEM225B (ENSMLUG00000023300) ENSMLUG00000017353 #32 ENSMLUG00000027083 ENSMLUG00000024696 #34 ENSMLUG00000026442 #34 TRIM4 (ENSMLUG00000001995) GJC3 (ENSMLUG00000002012) Greater horseshoe bat MODERN SPECIES 25 TEX43 (ENSRFEG00010000914) LMNB1 (ENSRFEG00010000927) ENSRFEG00010000967 MARCHF3 (ENSRFEG00010000985) C5orf63 (ENSRFEG00010001015) MEGF10 (ENSRFEG00010001053) PRRC1 (ENSRFEG00010001126) CTXN3 (ENSRFEG00010001164) CCDC192 (ENSRFEG00010001188) SLC12A2 (ENSRFEG00010001326) FBN2 (ENSRFEG00010001705) SLC27A6 (ENSRFEG00010001758) ENSRFEG00010001776 ENSRFEG00010001816 ARPC1A (ENSRFEG00010001888) #21 ARPC1B (ENSRFEG00010001904) #22 PDAP1 (ENSRFEG00010001955) #23 BUD31 (ENSRFEG00010001998) #24 PTCD1 (ENSRFEG00010002023) CPSF4 (ENSRFEG00010002049) #26 ENSRFEG00010002114 #27 ENSRFEG00010002156 ZNF789 (ENSRFEG00010002174) ZNF394 (ENSRFEG00010002189) #28 ZKSCAN5 (ENSRFEG00010002216) #30 FAM200A (ENSRFEG00010002229) ZNF655 (ENSRFEG00010002275) #31 ENSRFEG00010002302 TMEM225B (ENSRFEG00010002313) ZSCAN25 (ENSRFEG00010002331) #32 ENSRFEG00010002337 Megabat MODERN SPECIES 3872 ENSPVAG00000007520 ARPC1A (ENSPVAG00000007521) #21 ARPC1B (ENSPVAG00000007523) #22 PDAP1 (ENSPVAG00000007524) #23 BUD31 (ENSPVAG00000007527) #24 PTCD1 (ENSPVAG00000007529) CPSF4 (ENSPVAG00000007531) #26 ATP5MF (ENSPVAG00000007533) #27 Equus ANCESTRAL SPECIES 22 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.o #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT01050000244868.a.a.a.a.a.b.m.a ENSGT00940000154249.a.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.h.b.b.a #34 Horse MODERN SPECIES 4 AIMP2 (ENSECAG00000000053) PMS2 (ENSECAG00000014072) ENSECAG00000004548 #7 ENSECAG00000011387 #8 OCM (ENSECAG00000000243) #9 LMTK2 (ENSECAG00000019598) #10 TECPR1 (ENSECAG00000003104) #12 ENSECAG00000031100 #13 BAIAP2L1 (ENSECAG00000012734) #14 NPTX2 (ENSECAG00000012370) #16 TMEM130 (ENSECAG00000009541) #17 TRRAP (ENSECAG00000010540) #18 SMURF1 (ENSECAG00000017400) #19 KPNA7 (ENSECAG00000000554) #20 ENSECAG00000050899 #21 ARPC1B (ENSECAG00000024991) #22 PDAP1 (ENSECAG00000024426) #23 BUD31 (ENSECAG00000024151) #24 PTCD1 (ENSECAG00000016617) CPSF4 (ENSECAG00000007525) #26 ATP5MF (ENSECAG00000002088) #27 ENSECAG00000036787 ENSECAG00000022200 ZNF789 (ENSECAG00000011061) ENSECAG00000040295 ZNF394 (ENSECAG00000011549) #28 ZKSCAN5 (ENSECAG00000012353) #30 FAM200A (ENSECAG00000038549) ZNF655 (ENSECAG00000019599) #31 ENSECAG00000058567 ZSCAN25 (ENSECAG00000019610) #32 Donkey MODERN SPECIES 5 PMS2 (ENSEASG00005000763) ENSEASG00005000768 #7 ENSEASG00005000796 #8 ENSEASG00005000807 #9 LMTK2 (ENSEASG00005000819) #10 BHLHA15 (ENSEASG00005000829) #11 TECPR1 (ENSEASG00005000888) #12 ENSEASG00005023687 BAIAP2L1 (ENSEASG00005001273) #14 NPTX2 (ENSEASG00005001282) #16 TMEM130 (ENSEASG00005001296) #17 TRRAP (ENSEASG00005001513) #18 SMURF1 (ENSEASG00005002115) #19 KPNA7 (ENSEASG00005002435) #20 ENSEASG00005002444 #21 ARPC1B (ENSEASG00005002462) #22 PDAP1 (ENSEASG00005033136) #23 BUD31 (ENSEASG00005032549) #24 PTCD1 (ENSEASG00005002480) ENSEASG00005002487 #26 ENSEASG00005030979 #27 Carnivora ANCESTRAL SPECIES 12 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a #34 Felidae ANCESTRAL SPECIES 19 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a.g #34 ENSGT00950000182958.a.b.b.j.i.a.h #34 Panthera ANCESTRAL SPECIES 27 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a.g #34 ENSGT00950000182958.a.b.b.j.i.a.h #34 Panthera_a ANCESTRAL SPECIES 27 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000183014.f.a.h.p ENSGT00930000152728.c ENSGT00940000165702 leopard MODERN SPECIES 91 ENSPPRG00000001866 #9 LMTK2 (ENSPPRG00000001646) #10 BHLHA15 (ENSPPRG00000022063) #11 TECPR1 (ENSPPRG00000000441) #12 BRI3 (ENSPPRG00000022966) #13 BAIAP2L1 (ENSPPRG00000023080) #14 ENSPPRG00000023746 NPTX2 (ENSPPRG00000024054) #16 TMEM130 (ENSPPRG00000024166) #17 TRRAP (ENSPPRG00000024644) #18 ENSPPRG00000003908 SMURF1 (ENSPPRG00000013759) #19 KPNA7 (ENSPPRG00000011372) #20 ENSPPRG00000010473 ARPC1A (ENSPPRG00000008068) #21 ARPC1B (ENSPPRG00000007519) #22 PDAP1 (ENSPPRG00000007263) #23 BUD31 (ENSPPRG00000004354) #24 PTCD1 (ENSPPRG00000003478) CPSF4 (ENSPPRG00000003134) #26 ENSPPRG00000001557 #27 ZNF789 (ENSPPRG00000001332) ZNF394 (ENSPPRG00000000948) #28 ZKSCAN5 (ENSPPRG00000000685) #30 FAM200A (ENSPPRG00000020418) ZNF655 (ENSPPRG00000023556) #31 TMEM225B (ENSPPRG00000021822) ZSCAN25 (ENSPPRG00000020661) #32 ENSPPRG00000018011 ENSPPRG00000020127 ENSPPRG00000020116 lion MODERN SPECIES 16 ENSPLOG00000012512 #8 ENSPLOG00000012444 #9 LMTK2 (ENSPLOG00000012296) #10 BHLHA15 (ENSPLOG00000012274) #11 TECPR1 (ENSPLOG00000012232) #12 BRI3 (ENSPLOG00000012123) #13 BAIAP2L1 (ENSPLOG00000011965) #14 ENSPLOG00000011906 NPTX2 (ENSPLOG00000011785) #16 TMEM130 (ENSPLOG00000011537) #17 TRRAP (ENSPLOG00000022523) #18 SMURF1 (ENSPLOG00000022456) #19 KPNA7 (ENSPLOG00000022405) #20 ENSPLOG00000022335 ARPC1A (ENSPLOG00000022304) #21 ARPC1B (ENSPLOG00000022242) #22 PDAP1 (ENSPLOG00000022211) #23 BUD31 (ENSPLOG00000022188) #24 PTCD1 (ENSPLOG00000022137) CPSF4 (ENSPLOG00000022084) #26 ENSPLOG00000022043 #27 ZNF789 (ENSPLOG00000022019) ZNF394 (ENSPLOG00000022000) #28 ZKSCAN5 (ENSPLOG00000021985) #30 FAM200A (ENSPLOG00000021967) ZNF655 (ENSPLOG00000021930) #31 ENSPLOG00000021878 ZSCAN25 (ENSPLOG00000021838) #32 ENSPLOG00000021805 ENSPLOG00000021785 CYP3A131 (ENSPLOG00000021657) #34 Tiger MODERN SPECIES 155 PMS2 (ENSPTIG00000015503) ENSPTIG00000014426 #7 ENSPTIG00000013267 ENSPTIG00000010995 #8 ENSPTIG00000009441 #9 LMTK2 (ENSPTIG00000008096) #10 TECPR1 (ENSPTIG00000005029) #12 BAIAP2L1 (ENSPTIG00000020036) #14 NPTX2 (ENSPTIG00000019675) #16 TMEM130 (ENSPTIG00000017143) #17 ENSPTIG00000016839 SMURF1 (ENSPTIG00000019948) #19 KPNA7 (ENSPTIG00000019265) #20 ENSPTIG00000015791 ARPC1A (ENSPTIG00000015204) #21 ARPC1B (ENSPTIG00000014065) #22 PDAP1 (ENSPTIG00000012964) #23 BUD31 (ENSPTIG00000011324) #24 PTCD1 (ENSPTIG00000010617) CPSF4 (ENSPTIG00000005604) #26 ENSPTIG00000004326 #27 ZNF789 (ENSPTIG00000001790) ZNF394 (ENSPTIG00000020093) #28 ZKSCAN5 (ENSPTIG00000018483) #30 FAM200A (ENSPTIG00000006096) ZNF655 (ENSPTIG00000015445) #31 TMEM225B (ENSPTIG00000013612) ZSCAN25 (ENSPTIG00000012424) #32 ENSPTIG00000005985 ENSPTIG00000011815 CYP3A131 (ENSPTIG00000011625) #34 Caniformia ANCESTRAL SPECIES 8 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Caniformia_b ANCESTRAL SPECIES 7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a #34 Ursidae ANCESTRAL SPECIES 3 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690.b #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.b #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a.b #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.i.a #34 ENSGT00950000182958.a.b.b.j.i.b.a #34 Ursus ANCESTRAL SPECIES 32 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690.b #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.b #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00940000165768 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.i.a #34 American black bear MODERN SPECIES 1742 KPNA7 (ENSUAMG00000008014) #20 ENSUAMG00000008018 ARPC1A (ENSUAMG00000008037) #21 ARPC1B (ENSUAMG00000008040) #22 PDAP1 (ENSUAMG00000008045) #23 BUD31 (ENSUAMG00000008048) #24 PTCD1 (ENSUAMG00000008049) CPSF4 (ENSUAMG00000008051) #26 Polar bear MODERN SPECIES 212 ENSUMAG00000009008 #7 ENSUMAG00000009052 #8 ENSUMAG00000009054 #9 LMTK2 (ENSUMAG00000009057) #10 TECPR1 (ENSUMAG00000009072) #12 BRI3 (ENSUMAG00000009119) #13 BAIAP2L1 (ENSUMAG00000009124) #14 ENSUMAG00000009130 NPTX2 (ENSUMAG00000009137) #16 TMEM130 (ENSUMAG00000009146) #17 ENSUMAG00000009153 #18 SMURF1 (ENSUMAG00000009290) #19 KPNA7 (ENSUMAG00000009427) #20 ENSUMAG00000009433 ARPC1A (ENSUMAG00000009440) #21 ARPC1B (ENSUMAG00000009445) #22 PDAP1 (ENSUMAG00000009448) #23 BUD31 (ENSUMAG00000009451) #24 PTCD1 (ENSUMAG00000009455) CPSF4 (ENSUMAG00000009474) #26 ENSUMAG00000009476 #27 ENSUMAG00000009480 ZNF789 (ENSUMAG00000009482) ZNF394 (ENSUMAG00000009484) #28 ZKSCAN5 (ENSUMAG00000009486) #30 FAM200A (ENSUMAG00000009489) ENSUMAG00000009492 ENSUMAG00000009495 ZSCAN25 (ENSUMAG00000009498) #32 ENSUMAG00000009516 #34 ENSUMAG00000009725 #34 Giant Panda MODERN SPECIES 1 PMS2 (ENSAMEG00000009032) ENSAMEG00000009007 #7 ENSAMEG00000008970 #8 ENSAMEG00000008965 #9 ENSAMEG00000008945 #10 TECPR1 (ENSAMEG00000008910) #12 BRI3 (ENSAMEG00000025389) #13 BAIAP2L1 (ENSAMEG00000008876) #14 NPTX2 (ENSAMEG00000006901) #16 TMEM130 (ENSAMEG00000006881) #17 TRRAP (ENSAMEG00000006794) #18 SMURF1 (ENSAMEG00000006728) #19 KPNA7 (ENSAMEG00000006691) #20 ENSAMEG00000006326 ARPC1A (ENSAMEG00000006322) #21 ARPC1B (ENSAMEG00000006289) #22 PDAP1 (ENSAMEG00000006274) #23 BUD31 (ENSAMEG00000006269) #24 PTCD1 (ENSAMEG00000006224) CPSF4 (ENSAMEG00000006252) #26 ENSAMEG00000027254 #27 ENSAMEG00000010231 ZNF789 (ENSAMEG00000006221) ZNF394 (ENSAMEG00000024236) #28 ZKSCAN5 (ENSAMEG00000006213) #30 FAM200A (ENSAMEG00000030624) ZNF655 (ENSAMEG00000006210) #31 TMEM225B (ENSAMEG00000006209) ZSCAN25 (ENSAMEG00000028606) #32 ENSAMEG00000004376 #34 ENSAMEG00000031466 Mustelinae ANCESTRAL SPECIES 64 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Ferret MODERN SPECIES 366 ENSMPUG00000016571 #7 ENSMPUG00000016569 #8 ENSMPUG00000016568 #9 LMTK2 (ENSMPUG00000016567) #10 BHLHA15 (ENSMPUG00000020102) #11 TECPR1 (ENSMPUG00000016564) #12 BRI3 (ENSMPUG00000016562) #13 BAIAP2L1 (ENSMPUG00000016561) #14 ENSMPUG00000016560 NPTX2 (ENSMPUG00000016559) #16 TMEM130 (ENSMPUG00000016558) #17 TRRAP (ENSMPUG00000016556) #18 SMURF1 (ENSMPUG00000016554) #19 KPNA7 (ENSMPUG00000016543) #20 ENSMPUG00000016523 ARPC1B (ENSMPUG00000016522) #22 PDAP1 (ENSMPUG00000016521) #23 BUD31 (ENSMPUG00000016519) #24 PTCD1 (ENSMPUG00000016518) CPSF4 (ENSMPUG00000016508) #26 ENSMPUG00000016506 ZNF789 (ENSMPUG00000016504) ZNF394 (ENSMPUG00000016503) #28 ENSMPUG00000016494 ENSMPUG00000016492 TMEM225B (ENSMPUG00000016491) ZSCAN25 (ENSMPUG00000016490) #32 ENSMPUG00000020101 American mink MODERN SPECIES 487 TMEM130 (ENSNVIG00000005922) #17 ENSNVIG00000005938 #18 ENSNVIG00000005969 #18 SMURF1 (ENSNVIG00000006131) #19 KPNA7 (ENSNVIG00000007636) #20 ENSNVIG00000007675 ARPC1A (ENSNVIG00000007739) #21 ARPC1B (ENSNVIG00000007787) #22 PDAP1 (ENSNVIG00000007834) #23 BUD31 (ENSNVIG00000007866) #24 PTCD1 (ENSNVIG00000007876) CPSF4 (ENSNVIG00000007981) #26 ENSNVIG00000008040 #27 ENSNVIG00000008074 ZNF789 (ENSNVIG00000008084) ENSNVIG00000008098 #28 ZKSCAN5 (ENSNVIG00000008113) #30 ZNF655 (ENSNVIG00000008181) #31 TMEM225B (ENSNVIG00000008271) ZSCAN25 (ENSNVIG00000008324) #32 ENSNVIG00000008363 Canidae ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.p.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.w #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a.e #34 Red fox DUPLICATION Red fox MODERN SPECIES 218 OCM2 (ENSVVUG00000015131) #9 LMTK2 (ENSVVUG00000015127) #10 BHLHA15 (ENSVVUG00000015125) #11 TECPR1 (ENSVVUG00000015112) #12 BRI3 (ENSVVUG00000015104) #13 BAIAP2L1 (ENSVVUG00000015091) #14 NPTX2 (ENSVVUG00000015063) #16 ENSVVUG00000015058 TMEM130 (ENSVVUG00000015055) #17 ENSVVUG00000015052 TRRAP (ENSVVUG00000011404) #18 SMURF1 (ENSVVUG00000009130) #19 ENSVVUG00000009096 #20 ENSVVUG00000009006 ARPC1A (ENSVVUG00000008994) #21 ARPC1B (ENSVVUG00000008857) #22 PDAP1 (ENSVVUG00000008843) #23 BUD31 (ENSVVUG00000008841) #24 PTCD1 (ENSVVUG00000008836) CPSF4 (ENSVVUG00000008824) #26 ENSVVUG00000008815 ZNF394 (ENSVVUG00000008797) #28 ZKSCAN5 (ENSVVUG00000008758) #30 FAM200A (ENSVVUG00000008745) ZNF655 (ENSVVUG00000008738) #31 TMEM225B (ENSVVUG00000008732) ZSCAN25 (ENSVVUG00000008713) #32 ENSVVUG00000008703 ENSVVUG00000008658 #34 Red fox MODERN SPECIES 30 ENSVVUG00000003816 RANBP9 (ENSVVUG00000003683) ENSVVUG00000003646 ENSVVUG00000003633 ENSVVUG00000003618 CD83 (ENSVVUG00000003609) ENSVVUG00000003574 JARID2 (ENSVVUG00000003416) DTNBP1 (ENSVVUG00000003410) MYLIP (ENSVVUG00000003403) GMPR (ENSVVUG00000003402) ATXN1 (ENSVVUG00000003386) STMND1 (ENSVVUG00000003370) ENSVVUG00000003364 CAP2 (ENSVVUG00000003337) ENSVVUG00000003313 #22 FAM8A1 (ENSVVUG00000003308) NUP153 (ENSVVUG00000003265) KIF13A (ENSVVUG00000003156) NHLRC1 (ENSVVUG00000003126) ENSVVUG00000003118 TPMT (ENSVVUG00000003096) KDM1B (ENSVVUG00000003007) DEK (ENSVVUG00000002975) RNF144B (ENSVVUG00000002955) ENSVVUG00000002946 MBOAT1 (ENSVVUG00000002867) ENSVVUG00000002851 CDKAL1 (ENSVVUG00000002820) ENSVVUG00000002798 ENSVVUG00000002795 Canis_lupus ANCESTRAL SPECIES 2 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000153096.b.c.b.b.h ENSGT00940000161804.c.a.a ENSGT00940000158690 #19 ENSGT01050000244891.B.p.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.w #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a.e #34 Dingo MODERN SPECIES 351 ENSCAFG00020016887 LMTK2 (ENSCAFG00020016884) #10 BHLHA15 (ENSCAFG00020016879) #11 TECPR1 (ENSCAFG00020016803) #12 BRI3 (ENSCAFG00020016791) #13 BAIAP2L1 (ENSCAFG00020016786) #14 NPTX2 (ENSCAFG00020016774) #16 TMEM130 (ENSCAFG00020016766) #17 TRRAP (ENSCAFG00020015718) #18 ENSCAFG00020015608 ENSCAFG00020015606 SMURF1 (ENSCAFG00020014606) #19 KPNA7 (ENSCAFG00020014578) #20 ENSCAFG00020014574 ARPC1A (ENSCAFG00020014569) #21 ARPC1B (ENSCAFG00020014497) #22 PDAP1 (ENSCAFG00020014491) #23 BUD31 (ENSCAFG00020014486) #24 PTCD1 (ENSCAFG00020014480) CPSF4 (ENSCAFG00020014462) #26 ENSCAFG00020014459 #27 ENSCAFG00020014458 ZNF789 (ENSCAFG00020014455) ZNF394 (ENSCAFG00020014454) #28 ZKSCAN5 (ENSCAFG00020014453) #30 FAM200A (ENSCAFG00020014452) ENSCAFG00020014451 TMEM225B (ENSCAFG00020014448) ZSCAN25 (ENSCAFG00020014447) #32 ENSCAFG00020014443 ENSCAFG00020014437 #34 Dog DUPLICATION Dog MODERN SPECIES 34 TECPR1 (ENSCAFG00845009230) #12 BRI3 (ENSCAFG00845009124) #13 BAIAP2L1 (ENSCAFG00845009005) #14 NPTX2 (ENSCAFG00845004136) #16 TMEM130 (ENSCAFG00845004094) #17 TRRAP (ENSCAFG00845003973) #18 ENSCAFG00845003892 ENSCAFG00845003878 SMURF1 (ENSCAFG00845003851) #19 ENSCAFG00845003829 #20 MYH16 (ENSCAFG00845003682) ARPC1A (ENSCAFG00845003616) #21 PDAP1 (ENSCAFG00845003605) #23 BUD31 (ENSCAFG00845003589) #24 PTCD1 (ENSCAFG00845003559) ARPC1B (ENSCAFG00845003541) #22 ATP5J2 (ENSCAFG00845003518) #27 CPSF4 (ENSCAFG00845003492) #26 ENSCAFG00845003476 ZNF789 (ENSCAFG00845003457) ZNF394 (ENSCAFG00845003436) #28 ZKSCAN5 (ENSCAFG00845003412) #30 FAM200A (ENSCAFG00845003383) ZNF655 (ENSCAFG00845003343) #31 TMEM225B (ENSCAFG00845003304) ENSCAFG00845003272 #32 OR1F15 (ENSCAFG00845003253) CYP3A26 (ENSCAFG00845003103) #34 OR2AE1 (ENSCAFG00845002965) TRIM4 (ENSCAFG00845002953) ENSCAFG00845002934 Dog MODERN SPECIES 28 RANBP9 (ENSCAFG00845022601) ENSCAFG00845022965 ENSCAFG00845023078 RNF182 (ENSCAFG00845023112) CD83 (ENSCAFG00845023170) ASF1B (ENSCAFG00845023235) JARID2 (ENSCAFG00845023372) DTNBP1 (ENSCAFG00845023988) MYLIP (ENSCAFG00845024271) GMPR (ENSCAFG00845024346) ATXN1 (ENSCAFG00845024467) ENSCAFG00845024528 ENSCAFG00845024720 RBM24 (ENSCAFG00845024813) CAP2 (ENSCAFG00845024988) ENSCAFG00845025333 #22 FAM8A1 (ENSCAFG00845025363) NUP153 (ENSCAFG00845025432) KIF13A (ENSCAFG00845026182) KDM1B (ENSCAFG00845028324) NHLRC1 (ENSCAFG00845028631) ENSCAFG00845028647 TPMT (ENSCAFG00845028681) ENSCAFG00845028872 RNF144B (ENSCAFG00845028994) ENSCAFG00845029032 ID4 (ENSCAFG00845016386) MBOAT1 (ENSCAFG00845016457) E2F3 (ENSCAFG00845016633) CDKAL1 (ENSCAFG00845016956) SOX4 (ENSCAFG00845017149) Atlantogenata ANCESTRAL SPECIES 21 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT01090000260018.B.b ENSGT00940000163330 Xenarthra ANCESTRAL SPECIES ENSGT00950000183183.b.b #22 Armadillo MODERN SPECIES 959 FAM81A (ENSDNOG00000034819) ENSDNOG00000032898 MYO1E (ENSDNOG00000003626) CCNB2 (ENSDNOG00000033547) RNF111 (ENSDNOG00000002542) SLTM (ENSDNOG00000002975) MINDY2 (ENSDNOG00000013776) ADAM10 (ENSDNOG00000040738) ENSDNOG00000036584 #22 LIPC (ENSDNOG00000040890) AQP9 (ENSDNOG00000044325) ALDH1A2 (ENSDNOG00000010541) ENSDNOG00000044354 ENSDNOG00000042909 MYZAP (ENSDNOG00000003966) ENSDNOG00000003182 Afrotheria ANCESTRAL SPECIES 18 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 Tenrec MODERN SPECIES 2653 ENSETEG00000009915 ENSETEG00000009919 #21 ARPC1B (ENSETEG00000009924) #22 PDAP1 (ENSETEG00000009926) #23 PTCD1 (ENSETEG00000009928) Afrotheria_a ANCESTRAL SPECIES 65 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 Elephant MODERN SPECIES 403 ENSLAFG00000026343 #8 ENSLAFG00000027808 #9 LMTK2 (ENSLAFG00000000137) #10 BHLHA15 (ENSLAFG00000000139) #11 TECPR1 (ENSLAFG00000021861) #12 BRI3 (ENSLAFG00000031280) #13 BAIAP2L1 (ENSLAFG00000011959) #14 NPTX2 (ENSLAFG00000008442) #16 TMEM130 (ENSLAFG00000030396) #17 ENSLAFG00000027562 #18 ENSLAFG00000013536 #18 SMURF1 (ENSLAFG00000012470) #19 KPNA7 (ENSLAFG00000005116) #20 ENSLAFG00000008336 ARPC1A (ENSLAFG00000014024) #21 ARPC1B (ENSLAFG00000014031) #22 PDAP1 (ENSLAFG00000014038) #23 ENSLAFG00000012201 #24 PTCD1 (ENSLAFG00000002588) CPSF4 (ENSLAFG00000000159) #26 SEPTIN14 (ENSLAFG00000004021) MRPS17 (ENSLAFG00000027907) NIPSNAP2 (ENSLAFG00000010936) PSPH (ENSLAFG00000010938) CCT6A (ENSLAFG00000012791) SUMF2 (ENSLAFG00000012794) PHKG1 (ENSLAFG00000012802) ENSLAFG00000012806 VKORC1L1 (ENSLAFG00000002079) GUSB (ENSLAFG00000022591) ASL (ENSLAFG00000014828) Hyrax MODERN SPECIES 8566 ARPC1B (ENSPCAG00000013347) #22 PDAP1 (ENSPCAG00000013315) #23 Marsupialia ANCESTRAL SPECIES 6 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 ENSGT00390000017626 Opossum MODERN SPECIES 5 RADIL (ENSMODG00000000926) MMD2 (ENSMODG00000000933) ENSMODG00000000956 SLC29A4 (ENSMODG00000000979) TNRC18 (ENSMODG00000000994) FBXL18 (ENSMODG00000000999) ACTB (ENSMODG00000002647) FSCN1 (ENSMODG00000001028) ENSMODG00000001052 ENSMODG00000048718 ENSMODG00000001061 SMURF1 (ENSMODG00000001079) #19 KPNA7 (ENSMODG00000001093) #20 ENSMODG00000001273 ENSMODG00000001303 #21 ARPC1B (ENSMODG00000001316) #22 PDAP1 (ENSMODG00000001324) #23 PTCD1 (ENSMODG00000001350) CPSF4 (ENSMODG00000001367) #26 ENSMODG00000025496 #27 ENSMODG00000001377 MAP2K3 (ENSMODG00000042585) TMEM11 (ENSMODG00000001408) DHRS7B (ENSMODG00000001421) USP22 (ENSMODG00000001435) ENSMODG00000001449 ENSMODG00000000717 QPRT (ENSMODG00000001456) ENSMODG00000024917 ENSMODG00000001453 ENSMODG00000005311 Marsupialia_b ANCESTRAL SPECIES 18 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.r #24 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 Diprotodontia ANCESTRAL SPECIES 14 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.n #21 ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 ENSGT00390000017626 Diprotodontia_a ANCESTRAL SPECIES 13 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537.i ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.n #21 ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a.c #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 ENSGT00390000017626 Common wonbat MODERN SPECIES 1043 FOXK1 (ENSVURG00010018549) AP5Z1 (ENSVURG00010018537) RADIL (ENSVURG00010018523) MMD2 (ENSVURG00010018492) WIPI2 (ENSVURG00010018474) SLC29A4 (ENSVURG00010018431) TNRC18 (ENSVURG00010018350) FBXL18 (ENSVURG00010018291) ACTB (ENSVURG00010018277) FSCN1 (ENSVURG00010018267) RNF216 (ENSVURG00010018252) ENSVURG00010018242 SMURF1 (ENSVURG00010018224) #19 ENSVURG00010018191 ARPC1A (ENSVURG00010018169) #21 ARPC1B (ENSVURG00010018155) #22 PDAP1 (ENSVURG00010018142) #23 BUD31 (ENSVURG00010018125) #24 PTCD1 (ENSVURG00010018118) ENSVURG00010018069 #26 ENSVURG00010018064 #27 ENSVURG00010018055 MAP2K3 (ENSVURG00010018041) ENSVURG00010018034 TMEM11 (ENSVURG00010018029) DHRS7B (ENSVURG00010018024) USP22 (ENSVURG00010018016) ENSVURG00010018011 ENSVURG00010018008 QPRT (ENSVURG00010018004) ENSVURG00010018000 koala MODERN SPECIES 130 FOXK1 (ENSPCIG00000017373) AP5Z1 (ENSPCIG00000017374) RADIL (ENSPCIG00000017375) MMD2 (ENSPCIG00000017376) ENSPCIG00000017383 SLC29A4 (ENSPCIG00000029062) FBXL18 (ENSPCIG00000015253) ACTB (ENSPCIG00000015244) FSCN1 (ENSPCIG00000015239) RNF216 (ENSPCIG00000032734) ENSPCIG00000019658 SMURF1 (ENSPCIG00000019659) #19 ARPC1A (ENSPCIG00000024794) #21 ARPC1B (ENSPCIG00000024786) #22 PDAP1 (ENSPCIG00000024781) #23 ENSPCIG00000024779 #24 PTCD1 (ENSPCIG00000024778) CPSF4 (ENSPCIG00000024776) #26 ENSPCIG00000024775 #27 ENSPCIG00000024773 MAP2K3 (ENSPCIG00000001188) ENSPCIG00000001219 TMEM11 (ENSPCIG00000001231) DHRS7B (ENSPCIG00000001242) USP22 (ENSPCIG00000001276) ENSPCIG00000001333 ENSPCIG00000001344 QPRT (ENSPCIG00000001357) ENSPCIG00000001370 Wallaby MODERN SPECIES 3589 ARPC1B (ENSMEUG00000007881) #22 Tasmanian devil MODERN SPECIES RADIL (ENSSHAG00000004658) MMD2 (ENSSHAG00000028375) WIPI2 (ENSSHAG00000007266) ENSSHAG00000028539 SLC29A4 (ENSSHAG00000008906) ENSSHAG00000010855 TNRC18 (ENSSHAG00000009526) FBXL18 (ENSSHAG00000012245) ACTB (ENSSHAG00000029431) FSCN1 (ENSSHAG00000003565) ENSSHAG00000005785 ENSSHAG00000027219 ENSSHAG00000008364 #19 ENSSHAG00000009967 ENSSHAG00000010673 #21 ARPC1B (ENSSHAG00000030346) #22 PDAP1 (ENSSHAG00000028752) #23 BUD31 (ENSSHAG00000011349) #24 PTCD1 (ENSSHAG00000011376) CPSF4 (ENSSHAG00000011533) #26 ENSSHAG00000024488 #27 ENSSHAG00000021332 MAP2K3 (ENSSHAG00000014370) NATD1 (ENSSHAG00000027545) TMEM11 (ENSSHAG00000001753) ENSSHAG00000025678 ENSSHAG00000024580 ENSSHAG00000002524 ENSSHAG00000005106 ENSSHAG00000005789 ENSSHAG00000032174 Platypus MODERN SPECIES 11 AP5Z1 (ENSOANG00000003308) RADIL (ENSOANG00000003311) MMD2 (ENSOANG00000020170) WIPI2 (ENSOANG00000006569) SLC29A4 (ENSOANG00000006568) TNRC18 (ENSOANG00000006567) FBXL18 (ENSOANG00000006566) ACTB (ENSOANG00000007716) FSCN1 (ENSOANG00000030243) RNF216 (ENSOANG00000007717) ENSOANG00000007718 SMURF1 (ENSOANG00000007719) #19 KPNA7 (ENSOANG00000007721) #20 ENSOANG00000007722 ARPC1A (ENSOANG00000007724) #21 ARPC1B (ENSOANG00000007725) #22 PDAP1 (ENSOANG00000007726) #23 BUD31 (ENSOANG00000007727) #24 ENSOANG00000007728 CPSF4 (ENSOANG00000007729) #26 ATP5MF (ENSOANG00000007730) #27 ENSOANG00000007731 MAP2K3 (ENSOANG00000007732) NATD1 (ENSOANG00000007733) TMEM11 (ENSOANG00000007734) DHRS7B (ENSOANG00000007735) USP22 (ENSOANG00000001270) ENSOANG00000001268 MPRIP (ENSOANG00000001265) PLD6 (ENSOANG00000037555) FLCN (ENSOANG00000001264) Sauria ANCESTRAL SPECIES 12 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Lepidosauria ANCESTRAL SPECIES 22 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Episquamata ANCESTRAL SPECIES 8 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A Laterata ANCESTRAL SPECIES 22 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A Argentine black and white tegu MODERN SPECIES 103 AP5Z1 (ENSSMRG00000020271) RADIL (ENSSMRG00000020270) MMD2 (ENSSMRG00000020268) WIPI2 (ENSSMRG00000020266) SLC29A4 (ENSSMRG00000020264) TNRC18 (ENSSMRG00000020258) FBXL18 (ENSSMRG00000020254) ACTB (ENSSMRG00000020253) FSCN1 (ENSSMRG00000020250) RNF216 (ENSSMRG00000020248) ENSSMRG00000020246 SMURF1 (ENSSMRG00000020244) #19 KPNA7 (ENSSMRG00000020136) #20 ENSSMRG00000020128 ARPC1A (ENSSMRG00000020127) #21 ARPC1B (ENSSMRG00000020124) #22 PDAP1 (ENSSMRG00000020122) #23 BUD31 (ENSSMRG00000020120) #24 PTCD1 (ENSSMRG00000020118) CPSF4 (ENSSMRG00000020117) #26 ENSSMRG00000020116 ENSSMRG00000020115 MAP2K3 (ENSSMRG00000020114) NATD1 (ENSSMRG00000020113) TMEM11 (ENSSMRG00000020112) DHRS7B (ENSSMRG00000020111) USP22 (ENSSMRG00000020110) ENSSMRG00000020109 ENSSMRG00000020107 COX19 (ENSSMRG00000020106) Common wall lizard MODERN SPECIES 5 TXNDC11 (ENSPMRG00000012797) ZC3H7A (ENSPMRG00000012786) ENSPMRG00000012779 ENSPMRG00000012777 BFAR (ENSPMRG00000023027) ENSPMRG00000023022 CLCN7 (ENSPMRG00000023016) ENSPMRG00000023011 PARN (ENSPMRG00000023002) ENSPMRG00000022996 ECI1 (ENSPMRG00000022991) ENSPMRG00000022975 #20 ENSPMRG00000022958 #20 ENSPMRG00000022939 ENSPMRG00000022932 #21 ARPC1B (ENSPMRG00000022924) #22 PDAP1 (ENSPMRG00000022918) #23 BUD31 (ENSPMRG00000022912) #24 PTCD1 (ENSPMRG00000022910) CPSF4 (ENSPMRG00000022904) #26 ENSPMRG00000022899 ENSPMRG00000022896 MAP2K3 (ENSPMRG00000022885) ENSPMRG00000022881 ENSPMRG00000022878 TMEM11 (ENSPMRG00000022875) DHRS7B (ENSPMRG00000022868) USP22 (ENSPMRG00000022858) ENSPMRG00000022852 ENSPMRG00000022841 EEF2K (ENSPMRG00000022835) Toxicofera ANCESTRAL SPECIES 14 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A Elapidae ANCESTRAL SPECIES 1 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b.cb ENSGT00950000183157.a.a.b.bb ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875.a ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A Indian cobra MODERN SPECIES 15 AP5Z1 (ENSNNAG00000008991) RADIL (ENSNNAG00000008297) MMD2 (ENSNNAG00000008226) WIPI2 (ENSNNAG00000008185) SLC29A4 (ENSNNAG00000008031) TNRC18 (ENSNNAG00000007985) FBXL18 (ENSNNAG00000007962) ACTB (ENSNNAG00000007940) ENSNNAG00000016321 ENSNNAG00000016312 RNF216 (ENSNNAG00000016285) SMURF1 (ENSNNAG00000016275) #19 KPNA7 (ENSNNAG00000016223) #20 ENSNNAG00000016182 ARPC1A (ENSNNAG00000016149) #21 ARPC1B (ENSNNAG00000016131) #22 PDAP1 (ENSNNAG00000016121) #23 BUD31 (ENSNNAG00000016111) #24 PTCD1 (ENSNNAG00000016099) CPSF4 (ENSNNAG00000016093) #26 ENSNNAG00000016085 MAP2K3 (ENSNNAG00000016061) NATD1 (ENSNNAG00000016053) TMEM11 (ENSNNAG00000016047) DHRS7B (ENSNNAG00000016027) USP22 (ENSNNAG00000015976) ENSNNAG00000015960 ENSNNAG00000015935 GET4 (ENSNNAG00000015914) SUN1 (ENSNNAG00000015884) DNAAF5 (ENSNNAG00000015816) Elapidae_a ANCESTRAL SPECIES 3 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b.cb ENSGT00950000183157.a.a.b.bb ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875.a ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A Blue-lipped sea krait MODERN SPECIES 2816 SMURF1 (ENSLLTG00000001102) #19 KPNA7 (ENSLLTG00000001140) #20 ENSLLTG00000001193 ARPC1A (ENSLLTG00000001243) #21 ARPC1B (ENSLLTG00000001264) #22 PDAP1 (ENSLLTG00000001279) #23 BUD31 (ENSLLTG00000001290) #24 PTCD1 (ENSLLTG00000001300) CPSF4 (ENSLLTG00000001315) #26 Acanthophiinae ANCESTRAL SPECIES 2 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b.cb ENSGT00950000183157.a.a.b.bb ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875.a ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A ENSGT00390000015750 Mainland tiger snake MODERN SPECIES 241 FSCN1 (ENSNSUG00000014196) RNF216 (ENSNSUG00000014123) SMURF1 (ENSNSUG00000014122) #19 KPNA7 (ENSNSUG00000014121) #20 ENSNSUG00000014120 ARPC1A (ENSNSUG00000014119) #21 ARPC1B (ENSNSUG00000014118) #22 CPSF4 (ENSNSUG00000014117) #26 ENSNSUG00000014116 ENSNSUG00000014115 ENSNSUG00000014114 TMEM11 (ENSNSUG00000014113) DHRS7B (ENSNSUG00000014112) USP22 (ENSNSUG00000014111) TNFRSF13B (ENSNSUG00000014110) ENSNSUG00000014109 COX19 (ENSNSUG00000014108) ADAP1 (ENSNSUG00000014107) GET4 (ENSNSUG00000014106) ENSNSUG00000014105 ENSNSUG00000014104 PRKAR1B (ENSNSUG00000014103) Eastern brown snake MODERN SPECIES 24 FOXK1 (ENSPTXG00000006769) AP5Z1 (ENSPTXG00000006766) RADIL (ENSPTXG00000006655) SLC29A4 (ENSPTXG00000006654) ENSPTXG00000006652 ENSPTXG00000006651 FBXL18 (ENSPTXG00000006650) ACTB (ENSPTXG00000006649) ENSPTXG00000006648 ENSPTXG00000006647 ENSPTXG00000006646 SMURF1 (ENSPTXG00000006645) #19 KPNA7 (ENSPTXG00000006643) #20 ENSPTXG00000006641 ARPC1A (ENSPTXG00000006639) #21 ARPC1B (ENSPTXG00000006637) #22 BUD31 (ENSPTXG00000006636) #24 PTCD1 (ENSPTXG00000006635) CPSF4 (ENSPTXG00000006634) #26 ENSPTXG00000006632 ENSPTXG00000006631 ENSPTXG00000006628 NATD1 (ENSPTXG00000006626) TMEM11 (ENSPTXG00000006624) DHRS7B (ENSPTXG00000006623) USP22 (ENSPTXG00000006622) TNFRSF13B (ENSPTXG00000006619) ENSPTXG00000006618 COX19 (ENSPTXG00000006615) DNAAF5 (ENSPTXG00000006614) ENSPTXG00000006613 tuatara MODERN SPECIES 1383 RADIL (ENSSPUG00000002651) MMD2 (ENSSPUG00000002669) WIPI2 (ENSSPUG00000002705) SLC29A4 (ENSSPUG00000002730) TNRC18 (ENSSPUG00000002773) FBXL18 (ENSSPUG00000002840) ACTB (ENSSPUG00000002859) FSCN1 (ENSSPUG00000002887) ENSSPUG00000002901 ENSSPUG00000002931 ENSSPUG00000002956 SMURF1 (ENSSPUG00000002982) #19 KPNA7 (ENSSPUG00000003169) #20 ENSSPUG00000003424 ARPC1A (ENSSPUG00000003489) #21 ARPC1B (ENSSPUG00000003501) #22 PDAP1 (ENSSPUG00000003518) #23 BUD31 (ENSSPUG00000003523) #24 PTCD1 (ENSSPUG00000003540) CPSF4 (ENSSPUG00000003549) #26 ENSSPUG00000003555 ENSSPUG00000003583 MAP2K3 (ENSSPUG00000003597) NATD1 (ENSSPUG00000003604) TMEM11 (ENSSPUG00000003610) DHRS7B (ENSSPUG00000003613) USP22 (ENSSPUG00000003619) ENSSPUG00000003638 MPRIP (ENSSPUG00000003643) PLD6 (ENSSPUG00000003666) FLCN (ENSSPUG00000003680) Archelosauria ANCESTRAL SPECIES 12 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Archosauria ANCESTRAL SPECIES 8 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Aves ANCESTRAL SPECIES 11 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Neognathae ANCESTRAL SPECIES 10 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Galloanserae ANCESTRAL SPECIES 9 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Anatidae ANCESTRAL SPECIES 7 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293.c ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Duck MODERN SPECIES 6 SDK1 (ENSAPLG00000004608) ENSAPLG00000005773 ##34 ENSAPLG00000007447 #34 FOXK1 (ENSAPLG00000009084) AP5Z1 (ENSAPLG00000009165) ENSAPLG00000026450 WIPI2 (ENSAPLG00000009715) SLC29A4 (ENSAPLG00000010012) TNRC18 (ENSAPLG00000028315) FBXL18 (ENSAPLG00000010121) ACTB (ENSAPLG00000010147) RNF216 (ENSAPLG00000010364) SMURF1 (ENSAPLG00000010476) #19 KPNA7 (ENSAPLG00000010767) #20 ARPC1A (ENSAPLG00000011059) #21 ARPC1B (ENSAPLG00000020035) #22 PDAP1 (ENSAPLG00000006542) #23 BUD31 (ENSAPLG00000006748) #24 PTCD1 (ENSAPLG00000006862) CPSF4 (ENSAPLG00000018571) #26 ATP5MF (ENSAPLG00000007021) #27 ENSAPLG00000027874 ENSAPLG00000026453 NATD1 (ENSAPLG00000007590) TMEM11 (ENSAPLG00000028416) DHRS7B (ENSAPLG00000007599) USP22 (ENSAPLG00000002524) TNFRSF13B (ENSAPLG00000021324) MPRIP (ENSAPLG00000030840) PLD6 (ENSAPLG00000004112) FLCN (ENSAPLG00000004124) Pink-footed goose MODERN SPECIES 59 ENSABRG00000002324 #34 FOXK1 (ENSABRG00000002286) AP5Z1 (ENSABRG00000002241) RADIL (ENSABRG00000002193) MMD2 (ENSABRG00000002148) WIPI2 (ENSABRG00000002125) SLC29A4 (ENSABRG00000002112) TNRC18 (ENSABRG00000002069) FBXL18 (ENSABRG00000002032) ACTB (ENSABRG00000002004) ENSABRG00000001980 RNF216 (ENSABRG00000001919) SMURF1 (ENSABRG00000001864) #19 KPNA7 (ENSABRG00000001828) #20 ARPC1A (ENSABRG00000001764) #21 ARPC1B (ENSABRG00000001702) #22 PDAP1 (ENSABRG00000001687) #23 BUD31 (ENSABRG00000001589) #24 PTCD1 (ENSABRG00000001568) CPSF4 (ENSABRG00000001549) #26 ATP5MF (ENSABRG00000001534) #27 ENSABRG00000001514 MAP2K3 (ENSABRG00000001410) NATD1 (ENSABRG00000001319) TMEM11 (ENSABRG00000001303) DHRS7B (ENSABRG00000001258) USP22 (ENSABRG00000001162) TNFRSF13B (ENSABRG00000001137) MPRIP (ENSABRG00000000875) PLD6 (ENSABRG00000000855) FLCN (ENSABRG00000000811) Phasianidae ANCESTRAL SPECIES 10 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032.a ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Phasianidae_b ANCESTRAL SPECIES 10 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032.a ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Chicken MODERN SPECIES 5 FOXK1 (ENSGALG00010021144) AP5Z1 (ENSGALG00010021146) RADIL (ENSGALG00010021155) MMD2 (ENSGALG00010021159) WIPI2 (ENSGALG00010021162) SLC29A4 (ENSGALG00010021172) TNRC18 (ENSGALG00010021188) FBXL18 (ENSGALG00010021214) ACTB (ENSGALG00010021232) FSCN1 (ENSGALG00010021237) RNF216 (ENSGALG00010021251) ENSGALG00010021271 SMURF1 (ENSGALG00010021301) #19 KPNA7 (ENSGALG00010021313) #20 ARPC1A (ENSGALG00010021325) #21 ARPC1B (ENSGALG00010021362) #22 PDAP1 (ENSGALG00010021401) #23 BUD31 (ENSGALG00010021414) #24 PTCD1 (ENSGALG00010021424) CPSF4 (ENSGALG00010021431) #26 ATP5J2 (ENSGALG00010021454) #27 KCNJ12 (ENSGALG00010021526) MAP2K3 (ENSGALG00010021550) NATD1 (ENSGALG00010021573) TMEM11 (ENSGALG00010021610) DHRS7B (ENSGALG00010021629) USP22 (ENSGALG00010021655) TNFRSF13B (ENSGALG00010021671) MPRIP (ENSGALG00010021689) PLD6 (ENSGALG00010021702) FLCN (ENSGALG00010021700) Turkey MODERN SPECIES 7 ENSMGAG00000004302 ENSMGAG00000004369 ENSMGAG00000019138 ENSMGAG00000004299 TNFRSF13B (ENSMGAG00000004358) ENSMGAG00000015545 ENSMGAG00000004263 NATD1 (ENSMGAG00000004258) ENSMGAG00000004264 ENSMGAG00000015541 CPSF4 (ENSMGAG00000004235) #26 ENSMGAG00000018852 #27 BUD31 (ENSMGAG00000004195) #24 ENSMGAG00000004211 ENSMGAG00000004113 #21 ENSMGAG00000004152 #22 PDAP1 (ENSMGAG00000004176) #23 KPNA7 (ENSMGAG00000004051) #20 ENSMGAG00000021321 ENSMGAG00000003976 ENSMGAG00000003983 #19 ENSMGAG00000003930 ENSMGAG00000016921 ENSMGAG00000003905 ENSMGAG00000018626 ENSMGAG00000003960 ENSMGAG00000003918 ENSMGAG00000021420 ENSMGAG00000003892 ENSMGAG00000003866 ENSMGAG00000003831 Japanese quail MODERN SPECIES 5 AP5Z1 (ENSCJPG00005000241) RADIL (ENSCJPG00005000245) MMD2 (ENSCJPG00005000255) WIPI2 (ENSCJPG00005000267) SLC29A4 (ENSCJPG00005000281) TNRC18 (ENSCJPG00005000297) FBXL18 (ENSCJPG00005000327) ACTB (ENSCJPG00005000336) FSCN1 (ENSCJPG00005000395) RNF216 (ENSCJPG00005000414) ENSCJPG00005001323 SMURF1 (ENSCJPG00005001326) #19 ENSCJPG00005001328 KPNA7 (ENSCJPG00005001331) #20 ARPC1A (ENSCJPG00005001335) #21 ARPC1B (ENSCJPG00005001338) #22 PDAP1 (ENSCJPG00005001340) #23 BUD31 (ENSCJPG00005001343) #24 PTCD1 (ENSCJPG00005001347) CPSF4 (ENSCJPG00005001353) #26 ATP5MF (ENSCJPG00005001357) #27 ENSCJPG00005001360 MAP2K3 (ENSCJPG00005001368) NATD1 (ENSCJPG00005001379) TMEM11 (ENSCJPG00005001383) DHRS7B (ENSCJPG00005001385) USP22 (ENSCJPG00005001392) TNFRSF13B (ENSCJPG00005001394) MPRIP (ENSCJPG00005001400) PLD6 (ENSCJPG00005001422) FLCN (ENSCJPG00005001424) Neognathae_b ANCESTRAL SPECIES 12 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Passeriformes ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Great tit MODERN SPECIES 5 ENSPMJG00000017389 #34 FOXK1 (ENSPMJG00000017390) AP5Z1 (ENSPMJG00000017391) RADIL (ENSPMJG00000017392) MMD2 (ENSPMJG00000017393) WIPI2 (ENSPMJG00000017394) SLC29A4 (ENSPMJG00000017395) TNRC18 (ENSPMJG00000017396) FBXL18 (ENSPMJG00000017399) ACTB (ENSPMJG00000017400) FSCN1 (ENSPMJG00000017401) RNF216 (ENSPMJG00000017402) SMURF1 (ENSPMJG00000017403) #19 KPNA7 (ENSPMJG00000017404) #20 ARPC1A (ENSPMJG00000017406) #21 ARPC1B (ENSPMJG00000017407) #22 PDAP1 (ENSPMJG00000017408) #23 BUD31 (ENSPMJG00000017409) #24 PTCD1 (ENSPMJG00000017410) CPSF4 (ENSPMJG00000017411) #26 ATP5MF (ENSPMJG00000017412) #27 ENSPMJG00000017413 MAP2K3 (ENSPMJG00000017414) NATD1 (ENSPMJG00000017415) ENSPMJG00000017416 ENSPMJG00000017417 DHRS7B (ENSPMJG00000017419) USP22 (ENSPMJG00000017420) TNFRSF13B (ENSPMJG00000017421) MPRIP (ENSPMJG00000017422) FLCN (ENSPMJG00000017423) Passeriformes_d ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Passeriformes_g ANCESTRAL SPECIES 12 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Passeroidea ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00390000001055 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 Common canary MODERN SPECIES 17 ENSSCAG00000009176 #34 FOXK1 (ENSSCAG00000009164) AP5Z1 (ENSSCAG00000009139) RADIL (ENSSCAG00000009121) MMD2 (ENSSCAG00000009114) WIPI2 (ENSSCAG00000009100) SLC29A4 (ENSSCAG00000009090) ENSSCAG00000009080 FBXL18 (ENSSCAG00000009067) ACTB (ENSSCAG00000009060) FSCN1 (ENSSCAG00000009055) RNF216 (ENSSCAG00000009048) SMURF1 (ENSSCAG00000009043) #19 KPNA7 (ENSSCAG00000009027) #20 ARPC1A (ENSSCAG00000009009) #21 ARPC1B (ENSSCAG00000009006) #22 PDAP1 (ENSSCAG00000008999) #23 ENSSCAG00000008991 #24 PTCD1 (ENSSCAG00000008968) CPSF4 (ENSSCAG00000008956) #26 ENSSCAG00000008947 ENSSCAG00000008942 MAP2K3 (ENSSCAG00000008937) NATD1 (ENSSCAG00000008931) TMEM11 (ENSSCAG00000008929) DHRS7B (ENSSCAG00000008923) USP22 (ENSSCAG00000008918) TNFRSF13B (ENSSCAG00000008915) MPRIP (ENSSCAG00000008877) FLCN (ENSSCAG00000008865) COPS3 (ENSSCAG00000008862) Zebra finch MODERN SPECIES 5 ENSTGUG00000007903 ##34 ENSTGUG00000007790 #34 FOXK1 (ENSTGUG00000007783) AP5Z1 (ENSTGUG00000007760) RADIL (ENSTGUG00000007743) MMD2 (ENSTGUG00000029335) WIPI2 (ENSTGUG00000007704) SLC29A4 (ENSTGUG00000007691) TNRC18 (ENSTGUG00000007679) FBXL18 (ENSTGUG00000007676) ACTB (ENSTGUG00000004138) FSCN1 (ENSTGUG00000007668) RNF216 (ENSTGUG00000007658) SMURF1 (ENSTGUG00000007637) #19 KPNA7 (ENSTGUG00000007626) #20 ARPC1B (ENSTGUG00000007594) #22 PDAP1 (ENSTGUG00000007588) #23 BUD31 (ENSTGUG00000007584) #24 PTCD1 (ENSTGUG00000007563) CPSF4 (ENSTGUG00000007552) #26 ATP5MF (ENSTGUG00000027774) #27 ENSTGUG00000029126 MAP2K3 (ENSTGUG00000007502) TMEM11 (ENSTGUG00000007500) DHRS7B (ENSTGUG00000007489) USP22 (ENSTGUG00000007455) TNFRSF13B (ENSTGUG00000007454) MPRIP (ENSTGUG00000007423) PLD6 (ENSTGUG00000025415) FLCN (ENSTGUG00000007415) COPS3 (ENSTGUG00000007378) Medium ground finch MODERN SPECIES 22 SDK1 (ENSGFOG00000009659) ENSGFOG00000009594 ##34 ENSGFOG00000009559 #34 FOXK1 (ENSGFOG00000009540) AP5Z1 (ENSGFOG00000009472) RADIL (ENSGFOG00000009439) MMD2 (ENSGFOG00000009429) WIPI2 (ENSGFOG00000009409) SLC29A4 (ENSGFOG00000009402) FBXL18 (ENSGFOG00000009340) ENSGFOG00000009329 FSCN1 (ENSGFOG00000009318) RNF216 (ENSGFOG00000009308) SMURF1 (ENSGFOG00000008634) #19 KPNA7 (ENSGFOG00000008572) #20 ARPC1B (ENSGFOG00000008561) #22 ARPC1A (ENSGFOG00000008549) #21 PDAP1 (ENSGFOG00000008542) #23 ENSGFOG00000008538 #24 PTCD1 (ENSGFOG00000008525) CPSF4 (ENSGFOG00000008516) #26 ENSGFOG00000008510 ENSGFOG00000008509 MAP2K3 (ENSGFOG00000008502) NATD1 (ENSGFOG00000008499) TMEM11 (ENSGFOG00000008494) Neognathae_c ANCESTRAL SPECIES 14 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Golden eagle MODERN SPECIES 17 FOXK1 (ENSACCG00020013339) AP5Z1 (ENSACCG00020013298) RADIL (ENSACCG00020013236) MMD2 (ENSACCG00020013196) WIPI2 (ENSACCG00020013177) SLC29A4 (ENSACCG00020013147) TNRC18 (ENSACCG00020013096) FBXL18 (ENSACCG00020013037) ACTB (ENSACCG00020013020) FSCN1 (ENSACCG00020012998) RNF216 (ENSACCG00020012969) ENSACCG00020012955 SMURF1 (ENSACCG00020012938) #19 KPNA7 (ENSACCG00020012868) #20 ARPC1A (ENSACCG00020012791) #21 ARPC1B (ENSACCG00020012730) #22 PDAP1 (ENSACCG00020012701) #23 BUD31 (ENSACCG00020012680) #24 PTCD1 (ENSACCG00020012652) CPSF4 (ENSACCG00020012629) #26 ATP5MF (ENSACCG00020012613) #27 ENSACCG00020012599 MAP2K3 (ENSACCG00020012553) NATD1 (ENSACCG00020012513) TMEM11 (ENSACCG00020012496) DHRS7B (ENSACCG00020012388) USP22 (ENSACCG00020012331) TNFRSF13B (ENSACCG00020012289) MPRIP (ENSACCG00020012175) PLD6 (ENSACCG00020012032) FLCN (ENSACCG00020011997) Kakapo MODERN SPECIES 21 FOXK1 (ENSSHBG00005009241) AP5Z1 (ENSSHBG00005009252) RADIL (ENSSHBG00005009272) MMD2 (ENSSHBG00005009293) WIPI2 (ENSSHBG00005009312) SLC29A4 (ENSSHBG00005009331) TNRC18 (ENSSHBG00005009360) FBXL18 (ENSSHBG00005009478) ACTB (ENSSHBG00005009495) FSCN1 (ENSSHBG00005009511) RNF216 (ENSSHBG00005009526) ENSSHBG00005009548 SMURF1 (ENSSHBG00005009565) #19 KPNA7 (ENSSHBG00005009584) #20 ARPC1A (ENSSHBG00005009628) #21 ARPC1B (ENSSHBG00005009647) #22 PDAP1 (ENSSHBG00005009661) #23 BUD31 (ENSSHBG00005009702) #24 PTCD1 (ENSSHBG00005009712) CPSF4 (ENSSHBG00005009724) #26 ATP5MF (ENSSHBG00005009739) #27 ENSSHBG00005009753 MAP2K3 (ENSSHBG00005009760) NATD1 (ENSSHBG00005009769) TMEM11 (ENSSHBG00005009779) DHRS7B (ENSSHBG00005009791) USP22 (ENSSHBG00005009835) TNFRSF13B (ENSSHBG00005009892) MPRIP (ENSSHBG00005009910) PLD6 (ENSSHBG00005009927) FLCN (ENSSHBG00005009939) Australian saltwater crocodile MODERN SPECIES 46 FOXK1 (ENSCPRG00005016315) AP5Z1 (ENSCPRG00005016292) RADIL (ENSCPRG00005016285) MMD2 (ENSCPRG00005016281) WIPI2 (ENSCPRG00005016270) SLC29A4 (ENSCPRG00005016263) FBXL18 (ENSCPRG00005016208) ACTB (ENSCPRG00005016203) FSCN1 (ENSCPRG00005016199) RNF216 (ENSCPRG00005016190) ENSCPRG00005016185 SMURF1 (ENSCPRG00005016127) #19 KPNA7 (ENSCPRG00005016120) #20 ENSCPRG00005016109 ARPC1A (ENSCPRG00005016070) #21 ARPC1B (ENSCPRG00005016064) #22 PDAP1 (ENSCPRG00005016062) #23 BUD31 (ENSCPRG00005016057) #24 PTCD1 (ENSCPRG00005016054) CPSF4 (ENSCPRG00005016053) #26 ATP5MF (ENSCPRG00005016051) #27 ENSCPRG00005016049 MAP2K3 (ENSCPRG00005016043) NATD1 (ENSCPRG00005016042) TMEM11 (ENSCPRG00005016040) DHRS7B (ENSCPRG00005016037) USP22 (ENSCPRG00005016028) TNFRSF13B (ENSCPRG00005016024) MPRIP (ENSCPRG00005016012) PLD6 (ENSCPRG00005016009) FLCN (ENSCPRG00005016006) Cryptodira ANCESTRAL SPECIES 12 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Testudinoidea ANCESTRAL SPECIES 6 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Testudinidae ANCESTRAL SPECIES 13 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 Abingdon island giant tortoise MODERN SPECIES 914 ENSCABG00000019913 KPNA7 (ENSCABG00000019903) #20 ENSCABG00000019888 ARPC1A (ENSCABG00000019883) #21 ARPC1B (ENSCABG00000019881) #22 PDAP1 (ENSCABG00000019879) #23 BUD31 (ENSCABG00000019878) #24 PTCD1 (ENSCABG00000019877) CPSF4 (ENSCABG00000019876) #26 ENSCABG00000019873 ENSCABG00000019871 MAP2K3 (ENSCABG00000019870) NATD1 (ENSCABG00000019869) TMEM11 (ENSCABG00000019868) DHRS7B (ENSCABG00000019866) Goode s thornscrub tortoise MODERN SPECIES 1 AP5Z1 (ENSGEVG00005007693) RADIL (ENSGEVG00005007727) MMD2 (ENSGEVG00005007758) WIPI2 (ENSGEVG00005007807) SLC29A4 (ENSGEVG00005007844) TNRC18 (ENSGEVG00005007897) FBXL18 (ENSGEVG00005007947) ACTB (ENSGEVG00005007981) FSCN1 (ENSGEVG00005007997) RNF216 (ENSGEVG00005008033) ENSGEVG00005008108 SMURF1 (ENSGEVG00005008131) #19 KPNA7 (ENSGEVG00005008225) #20 ENSGEVG00005008415 ARPC1A (ENSGEVG00005008567) #21 ARPC1B (ENSGEVG00005008587) #22 PDAP1 (ENSGEVG00005008608) #23 BUD31 (ENSGEVG00005008621) #24 PTCD1 (ENSGEVG00005008641) CPSF4 (ENSGEVG00005008657) #26 ENSGEVG00005008673 ENSGEVG00005008686 MAP2K3 (ENSGEVG00005008697) NATD1 (ENSGEVG00005008718) TMEM11 (ENSGEVG00005008733) DHRS7B (ENSGEVG00005008744) USP22 (ENSGEVG00005008766) TNFRSF13B (ENSGEVG00005008795) MPRIP (ENSGEVG00005008868) PLD6 (ENSGEVG00005009155) FLCN (ENSGEVG00005009194) Emydidae ANCESTRAL SPECIES 12 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 ENSGT00390000009864 painted turtle MODERN SPECIES 2421 AP5Z1 (ENSCPBG00000020762) RADIL (ENSCPBG00000020765) MMD2 (ENSCPBG00000020769) WIPI2 (ENSCPBG00000020771) SLC29A4 (ENSCPBG00000020775) TNRC18 (ENSCPBG00000020786) FBXL18 (ENSCPBG00000020806) ACTB (ENSCPBG00000020809) FSCN1 (ENSCPBG00000020810) RNF216 (ENSCPBG00000020812) ENSCPBG00000020819 SMURF1 (ENSCPBG00000020821) #19 KPNA7 (ENSCPBG00000020833) #20 ENSCPBG00000020844 ARPC1A (ENSCPBG00000020854) #21 ARPC1B (ENSCPBG00000020858) #22 PDAP1 (ENSCPBG00000020862) #23 BUD31 (ENSCPBG00000020864) #24 PTCD1 (ENSCPBG00000020866) CPSF4 (ENSCPBG00000020869) #26 ATP5MF (ENSCPBG00000020871) #27 MAP2K3 (ENSCPBG00000020879) NATD1 (ENSCPBG00000020883) TMEM11 (ENSCPBG00000020885) DHRS7B (ENSCPBG00000020886) USP22 (ENSCPBG00000020888) TNFRSF13B (ENSCPBG00000020890) MPRIP (ENSCPBG00000020895) PLD6 (ENSCPBG00000020910) FLCN (ENSCPBG00000020915) COPS3 (ENSCPBG00000020918) Three-toed box turtle MODERN SPECIES 37 AP5Z1 (ENSTMTG00000014674) RADIL (ENSTMTG00000014332) MMD2 (ENSTMTG00000014249) WIPI2 (ENSTMTG00000014221) SLC29A4 (ENSTMTG00000014089) TNRC18 (ENSTMTG00000013974) FBXL18 (ENSTMTG00000013950) ACTB (ENSTMTG00000013939) FSCN1 (ENSTMTG00000013932) RNF216 (ENSTMTG00000013919) ENSTMTG00000013912 SMURF1 (ENSTMTG00000013503) #19 KPNA7 (ENSTMTG00000013331) #20 ENSTMTG00000013213 ARPC1A (ENSTMTG00000013201) #21 ARPC1B (ENSTMTG00000013193) #22 PDAP1 (ENSTMTG00000013184) #23 BUD31 (ENSTMTG00000013181) #24 PTCD1 (ENSTMTG00000013170) CPSF4 (ENSTMTG00000013163) #26 ATP5MF (ENSTMTG00000018744) #27 ENSTMTG00000018727 MAP2K3 (ENSTMTG00000018672) NATD1 (ENSTMTG00000018661) TMEM11 (ENSTMTG00000018651) DHRS7B (ENSTMTG00000018635) USP22 (ENSTMTG00000018604) TNFRSF13B (ENSTMTG00000018580) MPRIP (ENSTMTG00000018449) PLD6 (ENSTMTG00000018425) FLCN (ENSTMTG00000018397) Anura ANCESTRAL SPECIES 288 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 10 ENSLLEG00000017934 ENSLLEG00000017910 DNASE1L3 (ENSLLEG00000017824) ITGAV (ENSLLEG00000017273) CARD11 (ENSLLEG00000016801) FOXK1 (ENSLLEG00000016690) ENSLLEG00000016662 ENSLLEG00000016640 SLC29A4 (ENSLLEG00000016445) WIPI2 (ENSLLEG00000016159) SMURF1 (ENSLLEG00000028621) #19 ENSLLEG00000028588 ZC3H15 (ENSLLEG00000028373) KPNA7 (ENSLLEG00000028229) #20 ARPC1A (ENSLLEG00000028116) #21 ENSLLEG00000027985 #22 ENSLLEG00000027962 PDAP1 (ENSLLEG00000027924) #23 BUD31 (ENSLLEG00000027878) #24 PTCD1 (ENSLLEG00000027843) CPSF4 (ENSLLEG00000027717) #26 ENSLLEG00000027669 ENSLLEG00000027622 ENSLLEG00000027610 TMEM11 (ENSLLEG00000027583) NATD1 (ENSLLEG00000027541) DHRS7B (ENSLLEG00000027436) ENSLLEG00000027410 USP22 (ENSLLEG00000026537) ENSLLEG00000026383 ENSLLEG00000026278 Leishan spiny toad MODERN SPECIES 5 NCDN (ENSLLEG00000000136) ENSLLEG00000002788 KIAA0319L (ENSLLEG00000002751) ZMYM4 (ENSLLEG00000002696) ENSLLEG00000002672 ENSLLEG00000002658 ENSLLEG00000002643 ENSLLEG00000002627 ENSLLEG00000002612 ENSLLEG00000002595 ENSLLEG00000002573 ENSLLEG00000002554 ENSLLEG00000002542 ENSLLEG00000002531 DLGAP3 (ENSLLEG00000002504) ENSLLEG00000002479 #22 ENSLLEG00000002468 GRIK3 (ENSLLEG00000002394) ENSLLEG00000002359 ENSLLEG00000002346 ENSLLEG00000002340 ENSLLEG00000002336 ENSLLEG00000002321 ENSLLEG00000002312 ZC3H12A (ENSLLEG00000002291) ENSLLEG00000002267 MEAF6 (ENSLLEG00000002176) C1orf109 (ENSLLEG00000002145) ENSLLEG00000002134 SNIP1 (ENSLLEG00000002127) ENSLLEG00000002120 Frog MODERN SPECIES 9 ENSXETG00000046366 ENSXETG00000030743 ENSXETG00000044090 ENSXETG00000039174 ENSXETG00000046253 ENSXETG00000043701 luc7l (ENSXETG00000011562) fam234a (ENSXETG00000011563) mrpl28 (ENSXETG00000011564) usp22 (ENSXETG00000006051) dhrs7b (ENSXETG00000006052) ENSXETG00000046270 natd1 (ENSXETG00000024880) arpc1a (ENSXETG00000006057) #21 ENSXETG00000048691 arpc1b (ENSXETG00000006058) #22 bud31 (ENSXETG00000024872) #24 ENSXETG00000043374 ENSXETG00000044830 pdap1 (ENSXETG00000006062) #23 ENSXETG00000044515 card11 (ENSXETG00000045667) ENSXETG00000048008 ENSXETG00000044064 ENSXETG00000048709 ENSXETG00000045510 wipi2 (ENSXETG00000035921) ENSXETG00000042802 ENSXETG00000046117 ENSXETG00000042211 ENSXETG00000037883 Coelacanth MODERN SPECIES 345 TNRC18 (ENSLACG00000017249) FBXL18 (ENSLACG00000017111) ENSLACG00000017098 ENSLACG00000017094 ENSLACG00000016952 FSCN1 (ENSLACG00000016447) RNF216 (ENSLACG00000015715) ENSLACG00000015668 ENSLACG00000015251 ENSLACG00000014575 SMURF1 (ENSLACG00000014191) #19 KPNA7 (ENSLACG00000013531) #20 ENSLACG00000012445 ARPC1A (ENSLACG00000012158) #21 ARPC1B (ENSLACG00000011837) #22 PDAP1 (ENSLACG00000011502) #23 BUD31 (ENSLACG00000011373) #24 PTCD1 (ENSLACG00000011172) CPSF4 (ENSLACG00000010938) #26 atp5mf (ENSLACG00000010797) ENSLACG00000005568 Actinopterygii ANCESTRAL SPECIES 54 ENSGT00940000164900 ENSGT00940000169412 ENSGT00940000165096.b.b ENSGT00940000156922.b.a ENSGT00940000164958 ENSGT00940000155556.c ENSGT00940000157100 ENSGT00940000154768.A.b ENSGT01050000244814.a.b ENSGT01080000257338.A.b ENSGT00940000158127 ENSGT00940000159441 ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000156268.a.a ENSGT00940000163461.a.a.a.a ENSGT00940000163461.a.a.a.b ENSGT00940000161336 ENSGT00390000004323.b ENSGT00390000014667 ENSGT00940000168279 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00730000111191 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00940000156854 Reedfish MODERN SPECIES 2 PTCD1 (ENSECRG00000011515) cpsf4 (ENSECRG00000011433) #26 atp5mf (ENSECRG00000011385) slc29a4a (ENSECRG00000011361) ENSECRG00000011335 fbxl18 (ENSECRG00000011307) ACTB (ENSECRG00000011262) FSCN1 (ENSECRG00000020051) RNF216 (ENSECRG00000020006) ENSECRG00000019969 ENSECRG00000019928 smurf1 (ENSECRG00000019815) #19 kpna7 (ENSECRG00000019755) #20 ENSECRG00000019674 arpc1a (ENSECRG00000019611) #21 arpc1b (ENSECRG00000019549) #22 wipi2 (ENSECRG00000019499) mmd2a (ENSECRG00000019461) emp2 (ENSECRG00000019432) ENSECRG00000019398 GRIN2A (ENSECRG00000019325) hapstr1a (ENSECRG00000019279) USP7 (ENSECRG00000018912) si:ch211-157c3.4 (ENSECRG00000018814) ENSECRG00000018794 ENSECRG00000018777 ENSECRG00000018757 arhgdig (ENSECRG00000018736) rgs11 (ENSECRG00000018636) ENSECRG00000018566 pgap6 (ENSECRG00000018530) Neopterygii ANCESTRAL SPECIES 6 ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.b ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.a.a ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000165400 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000158127 ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000162543 ENSGT00390000004323.b ENSGT00940000168279 ENSGT00390000014667 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00730000111191 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00940000156854 ENSGT00940000176040 ENSGT00940000164189 ENSGT00940000168310 Spotted gar MODERN SPECIES 651 PTCD1 (ENSLOCG00000004833) cpsf4 (ENSLOCG00000004814) #26 atp5mf (ENSLOCG00000004800) slc29a4a (ENSLOCG00000004787) TNRC18 (ENSLOCG00000004756) fbxl18 (ENSLOCG00000004725) actb1 (ENSLOCG00000004713) fscn1a (ENSLOCG00000004693) RNF216 (ENSLOCG00000004666) ENSLOCG00000018103 ENSLOCG00000018102 smurf1 (ENSLOCG00000004637) #19 kpna7 (ENSLOCG00000004619) #20 ENSLOCG00000004563 arpc1a (ENSLOCG00000004549) #21 arpc1b (ENSLOCG00000004536) #22 wipi2 (ENSLOCG00000004511) mmd2a (ENSLOCG00000004492) radil (ENSLOCG00000004464) ap5z1 (ENSLOCG00000004430) ENSLOCG00000004405 ##34 ENSLOCG00000004392 ##34 ENSLOCG00000004367 ##34 SDK1 (ENSLOCG00000004340) CARD11 (ENSLOCG00000004308) gna12a (ENSLOCG00000004292) AMZ1 (ENSLOCG00000004268) brat1 (ENSLOCG00000004235) eif3ba (ENSLOCG00000004215) ENSLOCG00000004203 chst12a (ENSLOCG00000018101) Osteoglossocephalai ANCESTRAL SPECIES 24 ENSGT00940000164958 ENSGT00940000155556.c ENSGT00940000157100.b ENSGT01050000244814.a.b.b ENSGT00940000166074.A ENSGT01090000260189 ENSGT00940000157100.a ENSGT00940000154768.A.b ENSGT01050000244814.a.b.a ENSGT01080000257338.A.b ENSGT00940000158127 ENSGT00940000166074.B ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000156268.a.b ENSGT00390000014667 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00940000154076.A ENSGT00940000159717 ENSGT00940000154076.C.d ENSGT00940000156854.s ENSGT00940000162720.b.a.a.a ENSGT00940000177272 Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 98 ENSGT00940000159038.a.a ENSGT00940000159038.a.b ENSGT00940000164923.a.b ENSGT00390000012483 ENSGT00520000055626.b ENSGT00630000091000 ENSGT00390000000050 ENSGT00950000182898.a.b.c ENSGT00940000157099.u ENSGT00940000157099.v.a ENSGT00950000183157.a.a.b.a ENSGT01030000234534.C ENSGT00940000158690.d #19 ENSGT00940000160705.C.b.c.a ENSGT00950000183183.b.a.b #21 ENSGT00950000183183.b.b.a #22 ENSGT00940000155537.a ENSGT00940000157972.b ENSGT00940000159293.h ENSGT00390000017592 ENSGT00940000159507.g ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.a ENSGT00940000158573.e ENSGT00550000074913.e ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717.h ENSGT00950000183060.a.a.d.b ENSGT00460000041594 P. kingsleyae MODERN SPECIES 267 TBC1D10B (ENSPKIG00000017726) mylpfa (ENSPKIG00000017761) pheta2 (ENSPKIG00000017787) cd2bp2 (ENSPKIG00000017798) ENSPKIG00000017828 rusf1 (ENSPKIG00000017868) slc29a4a (ENSPKIG00000017922) ENSPKIG00000017952 ENSPKIG00000017991 ENSPKIG00000018028 FSCN1 (ENSPKIG00000018067) ENSPKIG00000018080 SMURF1 (ENSPKIG00000018100) #19 ENSPKIG00000018167 arpc1a (ENSPKIG00000018244) #21 arpc1b (ENSPKIG00000018299) #22 wipi2 (ENSPKIG00000018359) ENSPKIG00000018399 MMD2 (ENSPKIG00000018421) RADIL (ENSPKIG00000018461) ap5z1 (ENSPKIG00000018520) foxk1 (ENSPKIG00000018567) ENSPKIG00000018617 ##34 ENSPKIG00000018703 ##34 ENSPKIG00000018731 ENSPKIG00000018754 ENSPKIG00000018778 ENSPKIG00000018800 gemin8 (ENSPKIG00000018818) ENSPKIG00000018836 Asian bonytongue MODERN SPECIES 18 mylpfb (ENSSFOG00015006956) pheta2 (ENSSFOG00015024956) cd2bp2 (ENSSFOG00015006940) ENSSFOG00015006925 ENSSFOG00015032733 rusf1 (ENSSFOG00015006807) slc29a4a (ENSSFOG00015006743) ENSSFOG00015026914 ENSSFOG00015030220 TNRC18 (ENSSFOG00015006692) actb2 (ENSSFOG00015006657) ENSSFOG00015006633 SMURF1 (ENSSFOG00015006534) #19 ENSSFOG00015006391 arpc1a (ENSSFOG00015006328) #21 arpc1b (ENSSFOG00015006288) #22 wipi2 (ENSSFOG00015031380) MMD2 (ENSSFOG00015031989) RADIL (ENSSFOG00015006152) ap5z1 (ENSSFOG00015006120) foxk1 (ENSSFOG00015006080) cyp3c4 (ENSSFOG00015006064) ##34 SDK1 (ENSSFOG00015005958) CARD11 (ENSSFOG00015005860) EIF3B (ENSSFOG00015005824) chst12a (ENSSFOG00015027643) ENSSFOG00015005797 grifin (ENSSFOG00015005785) LFNG (ENSSFOG00015005761) TTYH3 (ENSSFOG00015005724) snx8a (ENSSFOG00015027657) Osteoglossiformes ANCESTRAL SPECIES 99 ENSGT00950000182957.b.a.b.a.b.b ENSGT00950000182957.b.a.b.a.b.a ENSGT00950000182898.a.b.d ENSGT00940000157099.v.b ENSGT00390000015109 ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b.b ENSGT00510000048032 ENSGT00940000165400.q ENSGT00940000158690.c #19 ENSGT00940000160705.C.b.c.b ENSGT00950000183183.b.a.a #21 ENSGT00950000183183.b.b.b #22 ENSGT00940000155537.b ENSGT00940000157972.a ENSGT00940000159293.g ENSGT00940000159507.h ENSGT00950000182958.b.a.a.a.b ##34 ENSGT00940000157747.b ENSGT00940000158573.f ENSGT00940000157636 ENSGT00390000017551 ENSGT00550000074913.f ENSGT00940000163734 ENSGT00940000158717.g ENSGT00950000183060.a.a.d.a ENSGT00940000163679 ENSGT00390000001316 Asian bonytongue MODERN SPECIES 12 hs3st2 (ENSSFOG00015005525) HS3ST4 (ENSSFOG00015024007) ears2 (ENSSFOG00015019361) ENSSFOG00015003116 ENSSFOG00015003168 SLC29A4 (ENSSFOG00015003203) TNRC18 (ENSSFOG00015003261) fbxl18 (ENSSFOG00015003278) ENSSFOG00015003294 FSCN1 (ENSSFOG00015028791) RNF216 (ENSSFOG00015003365) ENSSFOG00015003373 SMURF1 (ENSSFOG00015003386) #19 ENSSFOG00015003478 ARPC1A (ENSSFOG00015003595) #21 arpc1b (ENSSFOG00015003662) #22 WIPI2 (ENSSFOG00015003706) MMD2 (ENSSFOG00015030866) radil (ENSSFOG00015003792) FOXK1 (ENSSFOG00015003826) cyp3a65 (ENSSFOG00015003914) ##34 ENSSFOG00015004677 ##34 cyp3a65 (ENSSFOG00015005145) ##34 SDK1 (ENSSFOG00015005050) CARD11 (ENSSFOG00015006221) gna12a (ENSSFOG00015029829) brat1 (ENSSFOG00015006367) EIF3B (ENSSFOG00015006390) ENSSFOG00015006461 ENSSFOG00015027126 lfng (ENSSFOG00015006518) P. kingsleyae MODERN SPECIES 144 ENSPKIG00000010234 ENSPKIG00000010290 ENSPKIG00000010347 fbxl18 (ENSPKIG00000010437) ENSPKIG00000010452 fscn1a (ENSPKIG00000010464) RNF216 (ENSPKIG00000010505) ENSPKIG00000010562 ENSPKIG00000010588 SMURF1 (ENSPKIG00000010654) #19 ARPC1A (ENSPKIG00000010763) #21 arpc1b (ENSPKIG00000010821) #22 WIPI2 (ENSPKIG00000010854) MMD2 (ENSPKIG00000010889) radil (ENSPKIG00000010919) FOXK1 (ENSPKIG00000010956) cyp3a65 (ENSPKIG00000010991) ##34 SDK1 (ENSPKIG00000011127) CARD11 (ENSPKIG00000011579) GNA12 (ENSPKIG00000011669) brat1 (ENSPKIG00000011698) EIF3B (ENSPKIG00000011735) ENSPKIG00000011782 ENSPKIG00000011823 lfng (ENSPKIG00000011844) ttyh3b (ENSPKIG00000011905) iqce (ENSPKIG00000011959) Clupeocephala ANCESTRAL SPECIES 122 ENSGT00940000167865 ENSGT00930000151032.A ENSGT00390000009298 ENSGT00390000013127.b ENSGT00390000010052.b ENSGT00400000022459 ENSGT00940000153974.A ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00950000183060.a.a.d.b ENSGT00460000041594 ENSGT00390000000341 ENSGT00730000111241 ENSGT00940000161391.a ENSGT00390000000324 ENSGT00940000153861.a Otomorpha ANCESTRAL SPECIES 12 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Otophysi ANCESTRAL SPECIES 34 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Characiphysae ANCESTRAL SPECIES 10 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00550000074913.i ENSGT00940000156614.b.j ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b ENSGT00460000041594 Characiphysae_b ANCESTRAL SPECIES 1 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00940000166074.B ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00550000074913.i ENSGT00940000156614.b.j ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b ENSGT00460000041594 Characoidei ANCESTRAL SPECIES 3 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00550000074913.i ENSGT00940000156614.b.j ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b ENSGT00460000041594 Red-bellied piranha MODERN SPECIES 89 smcr8a (ENSPNAG00000022908) shmt1 (ENSPNAG00000022895) pdap1b (ENSPNAG00000022846) #23 bud31 (ENSPNAG00000022817) #24 cpsf4 (ENSPNAG00000003736) #26 atp5mf (ENSPNAG00000022775) slc29a4a (ENSPNAG00000022751) TNRC18 (ENSPNAG00000022709) actb2 (ENSPNAG00000022673) fscn1a (ENSPNAG00000022662) RNF216 (ENSPNAG00000022632) ENSPNAG00000003722 smurf1 (ENSPNAG00000022618) #19 ENSPNAG00000022571 arpc1a (ENSPNAG00000022456) #21 arpc1b (ENSPNAG00000022408) #22 wipi2 (ENSPNAG00000022384) mmd2a (ENSPNAG00000022319) ap5z1 (ENSPNAG00000022269) foxk1 (ENSPNAG00000022234) cyp3c4 (ENSPNAG00000022214) ##34 SDK1 (ENSPNAG00000022156) CARD11 (ENSPNAG00000021827) gna12a (ENSPNAG00000021705) eif3ba (ENSPNAG00000021677) chst12a (ENSPNAG00000021656) ENSPNAG00000021649 grifin (ENSPNAG00000021643) lfng (ENSPNAG00000021632) TTYH3 (ENSPNAG00000021579) snx8a (ENSPNAG00000021471) Mexicana tetra MODERN SPECIES 15 TNRC18 (ENSAMXG00000010115) actb2 (ENSAMXG00000037226) fscn1a (ENSAMXG00000031207) RNF216 (ENSAMXG00000010094) ENSAMXG00000025542 ENSAMXG00000042959 psmg3 (ENSAMXG00000030051) tmem184a (ENSAMXG00000039767) mafk (ENSAMXG00000001047) INTS1 (ENSAMXG00000001060) ENSAMXG00000030924 micall2a (ENSAMXG00000003783) smurf1 (ENSAMXG00000010087) #19 ENSAMXG00000010027 arpc1a (ENSAMXG00000009997) #21 arpc1b (ENSAMXG00000009992) #22 wipi2 (ENSAMXG00000009985) mmd2a (ENSAMXG00000030134) ap5z1 (ENSAMXG00000009967) foxk1 (ENSAMXG00000009961) ENSAMXG00000034235 ##34 ENSAMXG00000043827 ##34 ENSAMXG00000009950 ##34 SDK1 (ENSAMXG00000009867) CARD11 (ENSAMXG00000009824) gna12a (ENSAMXG00000035311) eif3ba (ENSAMXG00000009773) chst12a (ENSAMXG00000025540) ENSAMXG00000025538 grifin (ENSAMXG00000037837) lfng (ENSAMXG00000029254) Electric eel MODERN SPECIES slc29a4a (ENSEEEG00000000002) TNRC18 (ENSEEEG00000000003) actb2 (ENSEEEG00000000004) fscn1a (ENSEEEG00000000005) RNF216 (ENSEEEG00000000006) smurf1 (ENSEEEG00000000008) #19 ENSEEEG00000000009 arpc1a (ENSEEEG00000000010) #21 arpc1b (ENSEEEG00000000011) #22 wipi2 (ENSEEEG00000000012) mmd2a (ENSEEEG00000000013) ap5z1 (ENSEEEG00000000014) foxk1 (ENSEEEG00000000015) cyp3c4 (ENSEEEG00000000016) ##34 SDK1 (ENSEEEG00000000017) CARD11 (ENSEEEG00000000018) gna12a (ENSEEEG00000000019) eif3ba (ENSEEEG00000000020) chst12a (ENSEEEG00000000021) ENSEEEG00000000022 ENSEEEG00000000023 lfng (ENSEEEG00000000024) TTYH3 (ENSEEEG00000000025) snx8a (ENSEEEG00000000030) Channel catfish MODERN SPECIES 16 shmt1 (ENSIPUG00000017041) pdap1 (ENSIPUG00000017111) #23 bud31 (ENSIPUG00000017126) #24 cpsf4 (ENSIPUG00000017147) #26 atp5mf (ENSIPUG00000017219) slc29a4 (ENSIPUG00000017239) tnrc18 (ENSIPUG00000017314) twf1b (ENSIPUG00000017458) actb (ENSIPUG00000017486) fscn1 (ENSIPUG00000017523) ENSIPUG00000017537 ENSIPUG00000017573 smurf1 (ENSIPUG00000017588) #19 ENSIPUG00000017631 arpc1a (ENSIPUG00000017706) #21 ARPC1B (ENSIPUG00000017735) #22 WIPI2 (ENSIPUG00000017786) mmd2 (ENSIPUG00000017843) ap5z1 (ENSIPUG00000017877) foxk1 (ENSIPUG00000017911) cyp3a40 (ENSIPUG00000017942) ##34 SDK1 (ENSIPUG00000017988) card11 (ENSIPUG00000018235) gna12 (ENSIPUG00000018333) eif3b (ENSIPUG00000018347) chst12 (ENSIPUG00000018365) ENSIPUG00000018370 grifin (ENSIPUG00000018379) lfng (ENSIPUG00000018394) ttyh3 (ENSIPUG00000018410) snx8 (ENSIPUG00000018461) Cyprinoidei ANCESTRAL SPECIES 56 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690.f #19 ENSGT01030000234534.C ENSGT00940000158690.e #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b.c.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 182 ENSGT00940000156643.a ENSGT00940000156701.a ENSGT00390000010052.a.a ENSGT00390000002762.a.b.m ENSGT00390000018509.a.r #23 ENSGT00390000014300.m #24 ENSGT00940000155520.wb #26 ENSGT00940000165557.i ENSGT00950000182898.a.b.o.b ENSGT00940000157099.t ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b.o.b.a ENSGT00510000048032.k ENSGT00940000158690.e.a #19 ENSGT00950000183183.b.a.l #21 ENSGT00950000183183.b.b.c #22 ENSGT00940000155537.g ENSGT00940000157972.c.b ENSGT00390000017592.i ENSGT00940000159507.d ENSGT00950000182958.b.a.b.c.b.a ##34 ENSGT00940000157747.y.b ENSGT00940000158573.l ENSGT00940000157636.c.d ENSGT00980000201699.A ENSGT00550000074913.i.c ENSGT00940000156614.b.g ENSGT01070000253744.a.a.a.b.a.a.g.b ENSGT00940000162164.f.a.a ENSGT00940000158717.l ENSGT00950000183060.a.a.d.b.a.b Goldfish DUPLICATION Goldfish MODERN SPECIES 1684 arpc1a (ENSCARG00000044391) #21 arpc1b (ENSCARG00000044296) #22 wipi2 (ENSCARG00000044268) Goldfish MODERN SPECIES 2611 arpc1b (ENSCARG00000052001) #22 wipi2 (ENSCARG00000051868) mmd2a (ENSCARG00000051821) ap5z1 (ENSCARG00000051486) Cyprininae_a ANCESTRAL SPECIES 21 ENSGT00940000156643.a ENSGT00940000156701.a ENSGT00390000010052.a.a ENSGT00390000002762.a.b.m ENSGT00390000018509.a.r #23 ENSGT00390000014300.m #24 ENSGT00940000155520.wb #26 ENSGT00940000165557.i ENSGT00950000182898.a.b.o.b ENSGT00940000157099.t ENSGT00950000182960.a.a.a.b ENSGT00950000183157.a.a.b.o.b.a ENSGT00510000048032.k ENSGT01030000234534.C ENSGT00940000158690.e.a #19 ENSGT00950000183183.b.b.c #22 ENSGT00940000155537.g ENSGT00940000157972.c.b ENSGT00390000017592.i ENSGT00940000159507.d ENSGT00950000182958.b.a.b.c.b.a ##34 ENSGT00940000157747.y.b ENSGT00940000158573.l ENSGT00940000157636.c.d ENSGT00550000074913.i.c ENSGT00940000156614.b.g ENSGT01070000253744.a.a.a.b.a.a.g.b ENSGT00940000162164.f.b ENSGT00940000158717.l ENSGT00950000183060.a.a.d.b.a.b ENSGT00460000041594.q.b Common carp reference MODERN SPECIES 1 flii (ENSCCRG00000059665) TOP3A (ENSCCRG00000006080) smcr8a (ENSCCRG00000077891) shmt1 (ENSCCRG00000056003) pdap1b (ENSCCRG00000006016) #23 bud31 (ENSCCRG00000006005) #24 cpsf4 (ENSCCRG00000005959) #26 atp5mf (ENSCCRG00000031258) slc29a4a (ENSCCRG00000035546) ENSCCRG00000007286 actb2 (ENSCCRG00000001748) fscn1a (ENSCCRG00000001737) RNF216 (ENSCCRG00000006398) ENSCCRG00000013477 smurf1 (ENSCCRG00000001383) #19 arpc1b (ENSCCRG00000080423) #22 wipi2 (ENSCCRG00000075990) mmd2a (ENSCCRG00000057213) ap5z1 (ENSCCRG00000058240) cyp3c4 (ENSCCRG00000030874) ##34 cyp3c4 (ENSCCRG00000047631) ##34 SDK1 (ENSCCRG00000055349) ENSCCRG00000072338 ENSCCRG00000063825 gna12a (ENSCCRG00000061734) eif3ba (ENSCCRG00000076014) chst12a (ENSCCRG00000025342) ENSCCRG00000060023 grifin (ENSCCRG00000027710) lfng (ENSCCRG00000079591) ENSCCRG00000038525 Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 36 gfer (ENSSGRG00000025189) syngr3a (ENSSGRG00000025188) znf598 (ENSSGRG00000025187) flii (ENSSGRG00000024630) TOP3A (ENSSGRG00000024311) smcr8a (ENSSGRG00000024304) shmt1 (ENSSGRG00000024138) bud31 (ENSSGRG00000024126) #24 slc29a4a (ENSSGRG00000024125) TNRC18 (ENSSGRG00000024124) ENSSGRG00000024123 fscn1a (ENSSGRG00000024122) ENSSGRG00000024121 smurf1 (ENSSGRG00000023320) #19 arpc1a (ENSSGRG00000023238) #21 arpc1b (ENSSGRG00000023237) #22 arpc1b (ENSSGRG00000023235) #22 wipi2 (ENSSGRG00000022548) mmd2a (ENSSGRG00000022508) ap5z1 (ENSSGRG00000022504) foxk1 (ENSSGRG00000022494) cyp3c4 (ENSSGRG00000022236) ##34 SDK1 (ENSSGRG00000022161) CARD11 (ENSSGRG00000021748) gna12a (ENSSGRG00000021746) eif3ba (ENSSGRG00000021723) chst12a (ENSSGRG00000021722) ENSSGRG00000021721 grifin (ENSSGRG00000021719) lfng (ENSSGRG00000021661) TTYH3 (ENSSGRG00000021438) Golden-line barbel MODERN SPECIES 36 syngr3a (ENSSGRG00000025188) znf598 (ENSSGRG00000025187) flii (ENSSGRG00000024630) TOP3A (ENSSGRG00000024311) smcr8a (ENSSGRG00000024304) shmt1 (ENSSGRG00000024138) bud31 (ENSSGRG00000024126) #24 slc29a4a (ENSSGRG00000024125) TNRC18 (ENSSGRG00000024124) ENSSGRG00000024123 fscn1a (ENSSGRG00000024122) ENSSGRG00000024121 smurf1 (ENSSGRG00000023320) #19 arpc1a (ENSSGRG00000023238) #21 arpc1b (ENSSGRG00000023237) #22 arpc1b (ENSSGRG00000023235) #22 wipi2 (ENSSGRG00000022548) mmd2a (ENSSGRG00000022508) ap5z1 (ENSSGRG00000022504) foxk1 (ENSSGRG00000022494) cyp3c4 (ENSSGRG00000022236) ##34 SDK1 (ENSSGRG00000022161) CARD11 (ENSSGRG00000021748) gna12a (ENSSGRG00000021746) eif3ba (ENSSGRG00000021723) chst12a (ENSSGRG00000021722) ENSSGRG00000021721 grifin (ENSSGRG00000021719) lfng (ENSSGRG00000021661) TTYH3 (ENSSGRG00000021438) snx8a (ENSSGRG00000021422) Cyprininae ANCESTRAL SPECIES 545 ENSGT00950000183157.a.a.b.o.a ENSGT00510000048032.l ENSGT00940000158690.e.b #19 ENSGT00950000183183.b.a.k #21 ENSGT00950000183183.b.b.d #22 ENSGT00940000155537.h ENSGT00940000157972.c.a ENSGT00390000017592.j ENSGT00940000159507.c ENSGT00940000157747.y.a ENSGT00940000158573.k ENSGT00940000157636.c.c ENSGT00550000074913.i.d ENSGT00940000156614.b.h ENSGT01070000253744.a.a.a.b.a.a.g.a ENSGT00940000162164.e ENSGT00940000158717.k ENSGT00950000183060.a.a.d.b.a.a ENSGT00460000041594.q.a ENSGT00730000111241.q Cyprininae_a ANCESTRAL SPECIES 307 ENSGT00940000156643.b ENSGT00940000156701.b ENSGT00390000010052.a.b ENSGT00390000002762.a.b.n ENSGT00390000018509.a.q #23 ENSGT00390000014300.n #24 ENSGT00940000155520.vb #26 ENSGT00940000165557.h ENSGT00950000182898.a.b.o.a ENSGT00940000157099.s ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b.o.a ENSGT00510000048032.l ENSGT00940000158690.e.b #19 ENSGT00950000183183.b.a.k #21 ENSGT00950000183183.b.b.d #22 ENSGT00940000155537.h ENSGT00940000157972.c.a ENSGT00390000017592.j ENSGT00940000159507.c ENSGT00950000182958.b.a.b.c.a ##34 ENSGT00940000157747.y.a ENSGT00940000158573.k ENSGT00940000157636.c.c ENSGT00550000074913.i.d ENSGT00940000156614.b.h ENSGT01070000253744.a.a.a.b.a.a.g.a ENSGT00940000162164.e ENSGT00940000158717.k ENSGT00950000183060.a.a.d.b.a.a ENSGT00460000041594.q.a Common carp reference MODERN SPECIES 3 smcr8a (ENSCCRG00000012627) TOP3A (ENSCCRG00000012638) shmt1 (ENSCCRG00000012623) pdap1b (ENSCCRG00000068497) #23 bud31 (ENSCCRG00000073893) #24 cpsf4 (ENSCCRG00000012607) #26 atp5mf (ENSCCRG00000012602) slc29a4a (ENSCCRG00000029725) actb2 (ENSCCRG00000007233) ENSCCRG00000005914 fscn1a (ENSCCRG00000055127) RNF216 (ENSCCRG00000001719) smurf1 (ENSCCRG00000007960) #19 ENSCCRG00000015987 arpc1a (ENSCCRG00000007863) #21 arpc1b (ENSCCRG00000007822) #22 wipi2 (ENSCCRG00000007681) mmd2a (ENSCCRG00000007649) ap5z1 (ENSCCRG00000006288) foxk1 (ENSCCRG00000006272) ENSCCRG00000055534 ##34 SDK1 (ENSCCRG00000063944) CARD11 (ENSCCRG00000079965) eif3ba (ENSCCRG00000025354) chst12a (ENSCCRG00000060908) ENSCCRG00000077751 grifin (ENSCCRG00000025337) lfng (ENSCCRG00000038505) ENSCCRG00000075545 snx8a (ENSCCRG00000017625) ENSCCRG00000017624 Golden-line barbel MODERN SPECIES 8 znf598 (ENSSGRG00000046158) flii (ENSSGRG00000046171) smcr8a (ENSSGRG00000046490) shmt1 (ENSSGRG00000046492) pdap1b (ENSSGRG00000046617) #23 bud31 (ENSSGRG00000046618) #24 cpsf4 (ENSSGRG00000046623) #26 atp5mf (ENSSGRG00000046674) ENSSGRG00000046677 actb2 (ENSSGRG00000000280) fscn1a (ENSSGRG00000000599) ENSSGRG00000000601 ENSSGRG00000000609 smurf1 (ENSSGRG00000000663) #19 arpc1a (ENSSGRG00000002198) #21 arpc1b (ENSSGRG00000002202) #22 wipi2 (ENSSGRG00000002238) mmd2a (ENSSGRG00000002379) ap5z1 (ENSSGRG00000002381) foxk1 (ENSSGRG00000002384) cyp3c4 (ENSSGRG00000002398) ##34 ENSSGRG00000004847 ##34 SDK1 (ENSSGRG00000004909) CARD11 (ENSSGRG00000006508) gna12a (ENSSGRG00000006509) eif3ba (ENSSGRG00000006510) chst12a (ENSSGRG00000006636) ENSSGRG00000006637 grifin (ENSSGRG00000006644) lfng (ENSSGRG00000006645) TTYH3 (ENSSGRG00000006657) Goldfish DUPLICATION Goldfish MODERN SPECIES 22 ENSCARG00000059882 rhbdf1a (ENSCARG00000059962) aanat2 (ENSCARG00000060374) mgrn1b (ENSCARG00000060462) ubald1b (ENSCARG00000063111) ENSCARG00000063123 ENSCARG00000063169 s1pr2 (ENSCARG00000063247) dnmt1 (ENSCARG00000063315) eif3g (ENSCARG00000063726) p2ry11 (ENSCARG00000063869) ENSCARG00000063880 trip10a (ENSCARG00000063979) olfm2a (ENSCARG00000065566) arpc1a (ENSCARG00000065573) #21 arpc1b (ENSCARG00000065587) #22 wipi2 (ENSCARG00000065603) mmd2a (ENSCARG00000065728) ap5z1 (ENSCARG00000065773) SDK1 (ENSCARG00000065885) ENSCARG00000066191 ENSCARG00000066207 smurf1 (ENSCARG00000066359) #19 ABCC1 (ENSCARG00000067444) gna13b (ENSCARG00000069986) slc16a6b (ENSCARG00000069987) wipi1 (ENSCARG00000069989) zgc:86896 (ENSCARG00000069994) ##22 prkar1aa (ENSCARG00000069996) gps1 (ENSCARG00000070000) grna (ENSCARG00000070007) Goldfish MODERN SPECIES 22 scn4ab (ENSCARG00000002323) gh1 (ENSCARG00000002508) ENSCARG00000002560 ENSCARG00000002586 ENSCARG00000002589 ifnphi1 (ENSCARG00000002602) ifnphi1 (ENSCARG00000002638) ENSCARG00000002670 coa3b (ENSCARG00000002701) ENSCARG00000002713 ENSCARG00000002723 ENSCARG00000002732 ramp2 (ENSCARG00000002737) ENSCARG00000002744 arpc1a (ENSCARG00000002758) #21 arpc1b (ENSCARG00000002772) #22 wipi2 (ENSCARG00000002826) mmd2a (ENSCARG00000002971) ap5z1 (ENSCARG00000003003) ENSCARG00000003068 CREBBP (ENSCARG00000003136) ENSCARG00000003347 MCOLN1 (ENSCARG00000003394) ENSCARG00000003792 ubn2b (ENSCARG00000003829) trir (ENSCARG00000003920) ENSCARG00000003933 ENSCARG00000003950 EMP1 (ENSCARG00000003960) ENSCARG00000003979 ENSCARG00000003994 Zebrafish MODERN SPECIES 18 shmt1 (ENSDARG00000052816) pdap1b (ENSDARG00000002967) #23 bud31 (ENSDARG00000017084) #24 cpsf4 (ENSDARG00000020217) #26 ENSDARG00000116912 atp5mf (ENSDARG00000037867) slc29a4a (ENSDARG00000059690) TNRC18 (ENSDARG00000077052) actb2 (ENSDARG00000037870) fscn1a (ENSDARG00000059680) RNF216 (ENSDARG00000087893) ENSDARG00000109826 #19 ENSDARG00000096870 smurf1 (ENSDARG00000016086) #19 arpc1a (ENSDARG00000008383) #21 arpc1b (ENSDARG00000027063) #22 wipi2 (ENSDARG00000037871) mmd2a (ENSDARG00000087446) ap5z1 (ENSDARG00000078111) foxk1 (ENSDARG00000037872) cyp3c4 (ENSDARG00000070021) ##34 cyp3c3 (ENSDARG00000037873) ##34 ENSDARG00000037874 ##34 cyp3c1 (ENSDARG00000015575) ##34 SDK1 (ENSDARG00000078866) si:ch211-222n22.1 (ENSDARG00000097269) CARD11 (ENSDARG00000052741) ENSDARG00000115627 gna12a (ENSDARG00000025826) eif3ba (ENSDARG00000059654) chst12a (ENSDARG00000028786) Clupeiformes ANCESTRAL SPECIES 119 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT00940000166074.B ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Denticle herring MODERN SPECIES 17 smcr8a (ENSDCDG00000005352) shmt1 (ENSDCDG00000005364) pdap1b (ENSDCDG00000007605) #23 bud31 (ENSDCDG00000007610) #24 cpsf4 (ENSDCDG00000007624) #26 atp5mf (ENSDCDG00000007629) slc29a4a (ENSDCDG00000007633) TNRC18 (ENSDCDG00000007644) actb2 (ENSDCDG00000007657) fscn1a (ENSDCDG00000007707) ENSDCDG00000007718 ENSDCDG00000007733 smurf1 (ENSDCDG00000007740) #19 ENSDCDG00000007758 arpc1a (ENSDCDG00000007835) #21 arpc1b (ENSDCDG00000007870) #22 wipi2 (ENSDCDG00000008004) mmd2a (ENSDCDG00000008292) ap5z1 (ENSDCDG00000008330) foxk1 (ENSDCDG00000008373) cyp3c4 (ENSDCDG00000008452) ##34 SDK1 (ENSDCDG00000011464) CARD11 (ENSDCDG00000014495) gna12a (ENSDCDG00000014502) eif3ba (ENSDCDG00000014514) chst12a (ENSDCDG00000014552) ENSDCDG00000014556 grifin (ENSDCDG00000014560) lfng (ENSDCDG00000014571) TTYH3 (ENSDCDG00000014596) snx8a (ENSDCDG00000015235) Euteleosteomorpha ANCESTRAL SPECIES 171 ENSGT00940000159613 ENSGT00940000159788.a.b ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000178055 ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.a.b.b #34 ENSGT00940000157747 ENSGT00940000157636 Acanthomorphata ANCESTRAL SPECIES 39 ENSGT00950000182960.a.a.a.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.a.b.b #34 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Euacanthomorphacea ANCESTRAL SPECIES 3 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Pinecone sodierfish MODERN SPECIES ENSMMDG00005001059 fbxl18 (ENSMMDG00005001716) PTCD1 (ENSMMDG00005001724) zgc:112980 (ENSMMDG00005001733) smcr8b (ENSMMDG00005001743) mief2 (ENSMMDG00005001756) alkbh5 (ENSMMDG00005001762) ENSMMDG00005001768 ENSMMDG00005001774 GRIN2A (ENSMMDG00005001791) ENSMMDG00005001834 hapstr1b (ENSMMDG00005001839) abcg2b (ENSMMDG00005001846) ENSMMDG00005001849 ENSMMDG00005001852 arpc1b (ENSMMDG00005001863) #22 MMD2 (ENSMMDG00005001918) radil (ENSMMDG00005001999) foxk1 (ENSMMDG00005002006) cyp3a65 (ENSMMDG00005002016) ##34 cyp3a65 (ENSMMDG00005002051) ##34 ENSMMDG00005002452 ENSMMDG00005002457 ENSMMDG00005002466 SDK1 (ENSMMDG00005002494) GNA12 (ENSMMDG00005002710) ENSMMDG00005002724 ENSMMDG00005002747 EIF3B (ENSMMDG00005002768) brat1 (ENSMMDG00005002793) grapb (ENSMMDG00005002808) Percomorphaceae ANCESTRAL SPECIES 17 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.t ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Tiger tail seahorse MODERN SPECIES 518 ENSHCOG00000012204 mad1l1 (ENSHCOG00000011565) ELFN1 (ENSHCOG00000011553) VAV1 (ENSHCOG00000011487) UBL5 (ENSHCOG00000011460) pin1 (ENSHCOG00000011456) ENSHCOG00000011437 ENSHCOG00000011430 ENSHCOG00000011400 PLK1 (ENSHCOG00000011376) ENSHCOG00000011339 ttyh3b (ENSHCOG00000011321) ENSHCOG00000011268 ENSHCOG00000011040 arpc1a (ENSHCOG00000011030) #21 arpc1b (ENSHCOG00000010998) #22 ENSHCOG00000010966 ENSHCOG00000010858 ENSHCOG00000010830 alkbh5 (ENSHCOG00000010816) smcr8b (ENSHCOG00000010805) zgc:112980 (ENSHCOG00000010797) PTCD1 (ENSHCOG00000010784) fbxl18 (ENSHCOG00000010769) rdh8b (ENSHCOG00000010658) ENSHCOG00000010604 ENSHCOG00000010527 olfm2b (ENSHCOG00000010512) TRIP10 (ENSHCOG00000010451) ENSHCOG00000010436 ENSHCOG00000010401 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Ovalentaria ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Atherinomorphae ANCESTRAL SPECIES 20 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Cyprinodontiformes ANCESTRAL SPECIES 18 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Aplocheiloidei ANCESTRAL SPECIES 17 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 Mangrove rivulus MODERN SPECIES ENSKMAG00000008781 ENSKMAG00000008767 ENSKMAG00000008747 fbxl18 (ENSKMAG00000008729) PTCD1 (ENSKMAG00000008708) ENSKMAG00000008693 ENSKMAG00000008664 mief2 (ENSKMAG00000008644) alkbh5 (ENSKMAG00000008615) MYO15A (ENSKMAG00000008445) ENSKMAG00000008300 hapstr1b (ENSKMAG00000008256) abcg2c (ENSKMAG00000008205) ENSKMAG00000008189 arpc1a (ENSKMAG00000008145) #21 arpc1b (ENSKMAG00000008109) #22 MMD2 (ENSKMAG00000008075) radil (ENSKMAG00000008034) foxk1 (ENSKMAG00000008011) cyp3a65 (ENSKMAG00000007943) ##34 ENSKMAG00000007892 SDK1 (ENSKMAG00000007669) GNA12 (ENSKMAG00000007598) ENSKMAG00000007574 ENSKMAG00000007537 ENSKMAG00000007510 EIF3B (ENSKMAG00000007432) brat1 (ENSKMAG00000007384) grapb (ENSKMAG00000007362) ENSKMAG00000007343 SLC5A10 (ENSKMAG00000007319) Turquoise killifish MODERN SPECIES 1611 ENSNFUG00015006338 FBXL18 (ENSNFUG00015006340) PTCD1 (ENSNFUG00015006350) SMCR8B (ENSNFUG00015006353) ENSNFUG00015006362 mief2 (ENSNFUG00015006370) ALKBH5 (ENSNFUG00015006374) CR847950.4 (ENSNFUG00015006458) ENSNFUG00015006504 ENSNFUG00015006623 C1H16ORF72 (ENSNFUG00015006624) ENSNFUG00015006675 ENSNFUG00015007189 ENSNFUG00015007196 arpc1a (ENSNFUG00015007204) #21 arpc1b (ENSNFUG00015007224) #22 MMD2 (ENSNFUG00015007256) ENSNFUG00015007262 RADIL (ENSNFUG00015007274) foxk1 (ENSNFUG00015007286) cyp3a65 (ENSNFUG00015007369) ##34 ENSNFUG00015008493 ENSNFUG00015008500 SDK1 (ENSNFUG00015008616) ENSNFUG00015011270 mtg1 (ENSNFUG00015011277) GNA12A (ENSNFUG00015011291) ENSNFUG00015011476 CHST12 (ENSNFUG00015013751) ENSNFUG00015013753 EIF3B (ENSNFUG00015013813) Cyprinodontoidei ANCESTRAL SPECIES 24 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b NAME_4 ANCESTRAL SPECIES 176 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 Mummichog MODERN SPECIES 2496 ENSFHEG00000012458 ENSFHEG00000012469 fbxl18 (ENSFHEG00000012475) PTCD1 (ENSFHEG00000012491) ENSFHEG00000012501 ENSFHEG00000012508 mief2 (ENSFHEG00000012519) ENSFHEG00000012525 ENSFHEG00000012696 ENSFHEG00000012781 hapstr1b (ENSFHEG00000012815) abcg2c (ENSFHEG00000012869) ENSFHEG00000012881 ENSFHEG00000012893 arpc1a (ENSFHEG00000000760) #21 arpc1b (ENSFHEG00000000290) #22 MMD2 (ENSFHEG00000012996) radil (ENSFHEG00000013005) foxk1 (ENSFHEG00000013019) cyp3a65 (ENSFHEG00000013157) ##34 cyp3a65 (ENSFHEG00000013261) ##34 ENSFHEG00000013343 Sheepshead minnow MODERN SPECIES 574 PTCD1 (ENSCVAG00000003621) ENSCVAG00000022786 mief2 (ENSCVAG00000022780) alkbh5 (ENSCVAG00000022772) ENSCVAG00000022756 ENSCVAG00000022721 hapstr1b (ENSCVAG00000022682) abcg2b (ENSCVAG00000022660) ENSCVAG00000022634 arpc1a (ENSCVAG00000022624) #21 arpc1b (ENSCVAG00000022598) #22 MMD2 (ENSCVAG00000022574) radil (ENSCVAG00000022529) foxk1 (ENSCVAG00000022503) ENSCVAG00000022497 #34 Poeciliinae ANCESTRAL SPECIES 27 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.g.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000155905.a.e ENSGT00490000043413 ENSGT00530000063614.a.b ENSGT00940000165626.f ENSGT00940000177130 Poecilia ANCESTRAL SPECIES 31 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.g.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 NAME_6 ANCESTRAL SPECIES 323 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.g.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 Sailfin molly DUPLICATION Sailfin molly MODERN SPECIES 2259 arpc1b (ENSPLAG00000018563) #22 MMD2 (ENSPLAG00000018532) radil (ENSPLAG00000000422) foxk1 (ENSPLAG00000018421) Sailfin molly MODERN SPECIES 869 ENSPLAG00000004020 ENSPLAG00000004024 ENSPLAG00000004030 ENSPLAG00000004055 ENSPLAG00000004097 porcnl (ENSPLAG00000004137) suv39h1b (ENSPLAG00000004147) ENSPLAG00000004294 PAX7 (ENSPLAG00000006434) arpc1a (ENSPLAG00000006605) #21 arpc1b (ENSPLAG00000006677) #22 ENSPLAG00000006692 Amazon molly DUPLICATION Amazon molly MODERN SPECIES 652 ENSPFOG00000006473 ENSPFOG00000006668 hapstr1b (ENSPFOG00000007132) abcg2c (ENSPFOG00000007185) ENSPFOG00000023935 arpc1a (ENSPFOG00000023219) #21 arpc1b (ENSPFOG00000007351) #22 MMD2 (ENSPFOG00000007577) radil (ENSPFOG00000007614) foxk1 (ENSPFOG00000007970) cyp3a65 (ENSPFOG00000008049) ##34 ENSPFOG00000008593 ##34 ENSPFOG00000009128 ENSPFOG00000009153 Amazon molly MODERN SPECIES 1339 arpc1b (ENSPFOG00000015894) #22 Guppy MODERN SPECIES 439 UBL5 (ENSPREG00000000064) pin1 (ENSPREG00000000063) ENSPREG00000000062 ENSPREG00000000061 fbxl18 (ENSPREG00000000060) PTCD1 (ENSPREG00000000059) ENSPREG00000000058 ENSPREG00000000057 mief2 (ENSPREG00000000056) alkbh5 (ENSPREG00000000055) ENSPREG00000000054 ENSPREG00000000053 hapstr1b (ENSPREG00000000052) abcg2c (ENSPREG00000000051) arpc1a (ENSPREG00000000050) #21 arpc1b (ENSPREG00000000049) #22 MMD2 (ENSPREG00000000048) radil (ENSPREG00000000047) foxk1 (ENSPREG00000000046) ENSPREG00000000045 ##34 cyp3a65 (ENSPREG00000000044) ##34 ENSPREG00000000043 ENSPREG00000000042 SDK1 (ENSPREG00000000041) ENSPREG00000000040 ENSPREG00000000039 Platyfish MODERN SPECIES 19 pin1 (ENSXMAG00000015557) ENSXMAG00000024310 ENSXMAG00000015551 fbxl18 (ENSXMAG00000015544) PTCD1 (ENSXMAG00000015540) ENSXMAG00000015530 ENSXMAG00000022863 mief2 (ENSXMAG00000015519) alkbh5 (ENSXMAG00000015514) MYO15A (ENSXMAG00000015490) ENSXMAG00000000907 hapstr1b (ENSXMAG00000003416) abcg2b (ENSXMAG00000003423) ENSXMAG00000021146 arpc1a (ENSXMAG00000003448) #21 arpc1b (ENSXMAG00000003471) #22 MMD2 (ENSXMAG00000003490) radil (ENSXMAG00000003492) foxk1 (ENSXMAG00000003510) cyp3a65 (ENSXMAG00000025140) ##34 cyp3a65 (ENSXMAG00000009951) ##34 cyp3a65 (ENSXMAG00000027420) ##34 ENSXMAG00000026046 ENSXMAG00000029365 SDK1 (ENSXMAG00000006320) ENSXMAG00000027748 ENSXMAG00000022435 ENSXMAG00000022431 ENSXMAG00000028904 ENSXMAG00000021475 GNA12 (ENSXMAG00000006377) Oryzias ANCESTRAL SPECIES 15 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.f.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.f.a.a ##34 ENSGT00950000182958.b.a.a.a.a.a.f.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Oryzias_b ANCESTRAL SPECIES 21 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.f.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.f.a.a ##34 ENSGT00950000182958.b.a.a.a.a.a.f.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Indian medaka MODERN SPECIES 35 ENSOMEG00000020552 actb1 (ENSOMEG00000020586) fbxl18 (ENSOMEG00000020603) PTCD1 (ENSOMEG00000020627) ENSOMEG00000020666 ENSOMEG00000020754 mief2 (ENSOMEG00000020791) alkbh5 (ENSOMEG00000020820) MYO15A (ENSOMEG00000020933) ENSOMEG00000021095 hapstr1b (ENSOMEG00000021142) abcg2c (ENSOMEG00000021272) ENSOMEG00000000565 ENSOMEG00000021316 arpc1a (ENSOMEG00000021367) #21 arpc1b (ENSOMEG00000021429) #22 MMD2 (ENSOMEG00000021473) radil (ENSOMEG00000021581) foxk1 (ENSOMEG00000021635) cyp3a65 (ENSOMEG00000021683) ##34 cyp3a65 (ENSOMEG00000021770) ##34 cyp3a65 (ENSOMEG00000021856) ##34 ENSOMEG00000021903 SDK1 (ENSOMEG00000022171) GNA12 (ENSOMEG00000022227) ENSOMEG00000022267 ENSOMEG00000022285 grapb (ENSOMEG00000022301) FAM83G (ENSOMEG00000022330) SLC5A10 (ENSOMEG00000001807) gng13a (ENSOMEG00000001819) Javanese ricefish MODERN SPECIES ENSOJAG00000014504 ACTG1 (ENSOJAG00000014512) fbxl18 (ENSOJAG00000014573) PTCD1 (ENSOJAG00000014663) ENSOJAG00000014711 ENSOJAG00000014734 mief2 (ENSOJAG00000014808) alkbh5 (ENSOJAG00000014815) ENSOJAG00000014819 ENSOJAG00000014874 hapstr1b (ENSOJAG00000015004) abcg2c (ENSOJAG00000015025) ENSOJAG00000015322 ENSOJAG00000015330 arpc1a (ENSOJAG00000015354) #21 arpc1b (ENSOJAG00000015421) #22 MMD2 (ENSOJAG00000015528) radil (ENSOJAG00000015543) foxk1 (ENSOJAG00000015565) cyp3a65 (ENSOJAG00000015599) ##34 cyp3a65 (ENSOJAG00000015684) ##34 ENSOJAG00000017369 ENSOJAG00000017380 ENSOJAG00000017453 ENSOJAG00000018982 GNA12 (ENSOJAG00000018994) ENSOJAG00000019118 ENSOJAG00000003622 EIF3B (ENSOJAG00000003642) ENSOJAG00000003714 ENSOJAG00000003780 Oryzias_a ANCESTRAL SPECIES 26 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.f.a.a ##34 ENSGT00950000182958.b.a.a.a.a.a.f.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Chinese medaka MODERN SPECIES 973 pin1 (ENSOSIG00000016011) ENSOSIG00000015974 actb1 (ENSOSIG00000015919) fbxl18 (ENSOSIG00000015916) PTCD1 (ENSOSIG00000015915) ENSOSIG00000015907 ENSOSIG00000015902 mief2 (ENSOSIG00000015901) alkbh5 (ENSOSIG00000015899) ENSOSIG00000015781 hapstr1b (ENSOSIG00000015764) abcg2c (ENSOSIG00000015227) ENSOSIG00000015222 ENSOSIG00000015221 arpc1a (ENSOSIG00000015220) #21 arpc1b (ENSOSIG00000015215) #22 ENSOSIG00000015214 Japanese Medaka HdrR MODERN SPECIES ENSORLG00000022786 actb1 (ENSORLG00000009309) fbxl18 (ENSORLG00000009288) PTCD1 (ENSORLG00000009275) ENSORLG00000009263 ENSORLG00000009252 mief2 (ENSORLG00000009240) alkbh5 (ENSORLG00000009235) ENSORLG00000030000 ENSORLG00000009184 ENSORLG00000027721 hapstr1b (ENSORLG00000022770) abcg2c (ENSORLG00000009145) ENSORLG00000024225 arpc1a (ENSORLG00000009096) #21 arpc1b (ENSORLG00000009068) #22 MMD2 (ENSORLG00000025252) radil (ENSORLG00000009042) foxk1 (ENSORLG00000009023) cyp3a40 (ENSORLG00000019560) ##34 cyp3a (ENSORLG00000019618) ##34 ENSORLG00000009014 ENSORLG00000030128 ENSORLG00000008999 ENSORLG00000024037 GNA12 (ENSORLG00000008943) ern2 (ENSORLG00000008924) ENSORLG00000008873 EIF3B (ENSORLG00000008861) brat1 (ENSORLG00000008847) grapb (ENSORLG00000008827) Ovalentaria_B ANCESTRAL SPECIES 4 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Cichlidae ANCESTRAL SPECIES 3 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00990000204818.a ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.l.b ##34 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 Haplochromini ANCESTRAL SPECIES 3 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.l.b ##34 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747.k ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 Haplochromini_A ANCESTRAL SPECIES 2 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000165949 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747.k ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Haplochromini_B ANCESTRAL SPECIES 8 ENSGT00950000182960.a.a.b.e.b.a ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747.k ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Eastern happy MODERN SPECIES 18 fbxl18 (ENSACLG00000002840) PTCD1 (ENSACLG00000002824) zgc:112980 (ENSACLG00000002791) smcr8b (ENSACLG00000002784) mief2 (ENSACLG00000002732) alkbh5 (ENSACLG00000002713) ENSACLG00000002632 ENSACLG00000002598 ENSACLG00000002548 hapstr1b (ENSACLG00000002543) abcg2b (ENSACLG00000002540) ENSACLG00000002538 ENSACLG00000002517 ENSACLG00000002502 arpc1a (ENSACLG00000002471) #21 arpc1b (ENSACLG00000002439) #22 MMD2 (ENSACLG00000002411) radil (ENSACLG00000002353) foxk1 (ENSACLG00000002347) cyp3a65 (ENSACLG00000002304) ##34 cyp3a65 (ENSACLG00000002251) ##34 cyp3a65 (ENSACLG00000001386) ##34 GPANK1 (ENSACLG00000001320) ENSACLG00000001306 SDK1 (ENSACLG00000001109) ENSACLG00000001102 ENSACLG00000001057 ENSACLG00000001046 GNA12 (ENSACLG00000000981) ENSACLG00000000966 ENSACLG00000000948 Zebra mbuna MODERN SPECIES 1109 ENSMZEG00005012791 ACTB (ENSMZEG00005012760) PTCD1 (ENSMZEG00005012722) zgc:112980 (ENSMZEG00005012703) smcr8b (ENSMZEG00005012693) mief2 (ENSMZEG00005012679) alkbh5 (ENSMZEG00005012673) MYO15A (ENSMZEG00005012550) ENSMZEG00005012502 ENSMZEG00005012457 hapstr1b (ENSMZEG00005012443) abcg2b (ENSMZEG00005012411) ENSMZEG00005012398 ENSMZEG00005012389 arpc1a (ENSMZEG00005012370) #21 arpc1b (ENSMZEG00005012346) #22 MMD2 (ENSMZEG00005012327) radil (ENSMZEG00005012266) foxk1 (ENSMZEG00005012247) cyp3a65 (ENSMZEG00005012231) ##34 cyp3a65 (ENSMZEG00005012216) ##34 cyp3a65 (ENSMZEG00005012181) ##34 GPANK1 (ENSMZEG00005012135) ENSMZEG00005012115 ENSMZEG00005012110 SDK1 (ENSMZEG00005011972) GNA12 (ENSMZEG00005011918) ENSMZEG00005011884 ENSMZEG00005011878 EIF3B (ENSMZEG00005011827) brat1 (ENSMZEG00005011790) P. nyererei MODERN SPECIES 560 ENSPNYG00000019919 ENSPNYG00000019942 fbxl18 (ENSPNYG00000019957) PTCD1 (ENSPNYG00000019993) ENSPNYG00000020019 smcr8b (ENSPNYG00000020109) mief2 (ENSPNYG00000020121) alkbh5 (ENSPNYG00000020156) MYO15A (ENSPNYG00000020186) ENSPNYG00000020316 ENSPNYG00000020364 hapstr1b (ENSPNYG00000020374) abcg2c (ENSPNYG00000020405) ENSPNYG00000020481 arpc1a (ENSPNYG00000020492) #21 arpc1b (ENSPNYG00000020528) #22 MMD2 (ENSPNYG00000020553) radil (ENSPNYG00000020576) foxk1 (ENSPNYG00000020622) ENSPNYG00000020626 ##34 ENSPNYG00000020642 cyp3a65 (ENSPNYG00000020658) ##34 cyp3a65 (ENSPNYG00000020813) ##34 GPANK1 (ENSPNYG00000021711) ENSPNYG00000021772 SDK1 (ENSPNYG00000021802) Burton s mouthbrooder MODERN SPECIES 374 ENSHBUG00000018220 ENSHBUG00000018238 actb1 (ENSHBUG00000018251) fbxl18 (ENSHBUG00000018265) PTCD1 (ENSHBUG00000018275) ENSHBUG00000018284 smcr8b (ENSHBUG00000018288) mief2 (ENSHBUG00000018314) alkbh5 (ENSHBUG00000018324) ENSHBUG00000018462 ENSHBUG00000018585 hapstr1b (ENSHBUG00000018610) abcg2c (ENSHBUG00000018618) ENSHBUG00000018633 arpc1a (ENSHBUG00000018663) #21 arpc1b (ENSHBUG00000018691) #22 ENSHBUG00000018723 radil (ENSHBUG00000018755) foxk1 (ENSHBUG00000018823) ENSHBUG00000018835 ##34 cyp3a65 (ENSHBUG00000018842) ##34 cyp3a65 (ENSHBUG00000018871) ##34 ENSHBUG00000018924 ENSHBUG00000018938 SDK1 (ENSHBUG00000019165) GNA12 (ENSHBUG00000019222) ENSHBUG00000019242 ENSHBUG00000019254 EIF3B (ENSHBUG00000019329) brat1 (ENSHBUG00000019342) grapb (ENSHBUG00000019355) Lyretail cichlid MODERN SPECIES 332 PTCD1 (ENSNBRG00000010079) ENSNBRG00000010048 ENSNBRG00000009990 smcr8b (ENSNBRG00000009980) mief2 (ENSNBRG00000009954) alkbh5 (ENSNBRG00000009936) ENSNBRG00000009919 ENSNBRG00000009910 ENSNBRG00000009863 hapstr1b (ENSNBRG00000009844) abcg2c (ENSNBRG00000009655) ENSNBRG00000009620 ENSNBRG00000009597 arpc1a (ENSNBRG00000009587) #21 arpc1a (ENSNBRG00000009566) #21 arpc1b (ENSNBRG00000009543) #22 MMD2 (ENSNBRG00000009524) radil (ENSNBRG00000009464) foxk1 (ENSNBRG00000009409) cyp3a65 (ENSNBRG00000009111) ##34 cyp3a65 (ENSNBRG00000009035) ##34 cyp3a65 (ENSNBRG00000008950) ##34 ENSNBRG00000008940 ENSNBRG00000008923 SDK1 (ENSNBRG00000008837) ENSNBRG00000008814 GNA12 (ENSNBRG00000008798) ENSNBRG00000008766 ENSNBRG00000008730 EIF3B (ENSNBRG00000008582) brat1 (ENSNBRG00000008532) Nile tilapia MODERN SPECIES 18 fbxl18 (ENSONIG00000003165) PTCD1 (ENSONIG00000003168) zgc:112980 (ENSONIG00000003172) ENSONIG00000032900 smcr8b (ENSONIG00000003176) mief2 (ENSONIG00000003179) alkbh5 (ENSONIG00000003181) MYO15A (ENSONIG00000003182) ENSONIG00000003190 ENSONIG00000030100 hapstr1b (ENSONIG00000003202) abcg2b (ENSONIG00000003204) ENSONIG00000039403 ENSONIG00000039837 arpc1a (ENSONIG00000003213) #21 arpc1b (ENSONIG00000003217) #22 MMD2 (ENSONIG00000008524) radil (ENSONIG00000003223) foxk1 (ENSONIG00000003229) cyp3a65 (ENSONIG00000037961) ##34 cyp3a65 (ENSONIG00000003249) ##34 cyp3a65 (ENSONIG00000035482) ##34 cyp3a65 (ENSONIG00000034059) ##34 cyp3a65 (ENSONIG00000003231) ##34 ENSONIG00000033408 ENSONIG00000037527 ENSONIG00000033448 SDK1 (ENSONIG00000003264) GNA12 (ENSONIG00000003273) ENSONIG00000003276 ENSONIG00000031187 Midas cichlid MODERN SPECIES 1004 ENSACIG00000017987 ENSACIG00000017957 ENSACIG00000017943 fbxl18 (ENSACIG00000017899) PTCD1 (ENSACIG00000017861) smcr8b (ENSACIG00000017849) mief2 (ENSACIG00000017838) alkbh5 (ENSACIG00000017828) ENSACIG00000017815 ENSACIG00000017793 hapstr1b (ENSACIG00000017778) abcg2b (ENSACIG00000017725) ENSACIG00000017716 ENSACIG00000017707 arpc1a (ENSACIG00000017686) #21 arpc1b (ENSACIG00000017664) #22 MMD2 (ENSACIG00000017651) radil (ENSACIG00000017618) foxk1 (ENSACIG00000017584) cyp3a65 (ENSACIG00000017550) ##34 cyp3a65 (ENSACIG00000016717) ##34 cyp3a65 (ENSACIG00000016506) ##34 cyp3a65 (ENSACIG00000015785) ##34 ENSACIG00000015738 ENSACIG00000015729 SDK1 (ENSACIG00000015628) ENSACIG00000015602 GNA12 (ENSACIG00000015585) ENSACIG00000015500 ENSACIG00000015443 EIF3B (ENSACIG00000015396) Pomacentridae ANCESTRAL SPECIES 8 ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00940000153974.A ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Pomacentridae_A ANCESTRAL SPECIES 188 ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 Amphiprion ANCESTRAL SPECIES 124 ENSGT00950000183209.b.a.b ENSGT00940000155129.B ENSGT00940000157923 ENSGT00940000153974.A ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT01030000235934 Clown anemonefish MODERN SPECIES 698 ENSAOCG00000015669 arpc1a (ENSAOCG00000001081) #21 arpc1b (ENSAOCG00000015609) #22 MMD2 (ENSAOCG00000015562) radil (ENSAOCG00000015534) foxk1 (ENSAOCG00000015426) cyp3a65 (ENSAOCG00000015406) ##34 ENSAOCG00000015383 Orange clownfish MODERN SPECIES 17 ENSAPEG00000022651 smcr8b (ENSAPEG00000022674) mief2 (ENSAPEG00000022682) alkbh5 (ENSAPEG00000022697) ENSAPEG00000022728 ENSAPEG00000022754 ENSAPEG00000022789 hapstr1b (ENSAPEG00000022794) abcg2c (ENSAPEG00000022805) ENSAPEG00000022817 ENSAPEG00000022820 arpc1a (ENSAPEG00000022827) #21 arpc1a (ENSAPEG00000022863) #21 ENSAPEG00000022903 ENSAPEG00000022910 arpc1b (ENSAPEG00000022928) #22 MMD2 (ENSAPEG00000022945) radil (ENSAPEG00000022987) foxk1 (ENSAPEG00000023048) cyp3a65 (ENSAPEG00000023095) ##34 ENSAPEG00000023107 clrn2 (ENSAPEG00000023115) tapt1b (ENSAPEG00000023121) prom1b (ENSAPEG00000023178) fgfbp2b (ENSAPEG00000023360) FGFBP1 (ENSAPEG00000023365) ENSAPEG00000023370 anxa5b (ENSAPEG00000023383) uchl1 (ENSAPEG00000023424) limch1a (ENSAPEG00000023460) tmem192 (ENSAPEG00000023538) Spiny chromis MODERN SPECIES 1691 arpc1a (ENSAPOG00000004186) #21 arpc1b (ENSAPOG00000004144) #22 MMD2 (ENSAPOG00000004091) radil (ENSAPOG00000004046) Bicolor damselfish MODERN SPECIES 1493 ENSSPAG00000018808 hapstr1b (ENSSPAG00000018857) abcg2c (ENSSPAG00000018875) ENSSPAG00000018904 ENSSPAG00000018907 arpc1a (ENSSPAG00000018921) #21 arpc1b (ENSSPAG00000018957) #22 MMD2 (ENSSPAG00000018978) Percomorphaceae_C ANCESTRAL SPECIES 3 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Eupercaria ANCESTRAL SPECIES 2 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Tetraodontidae ANCESTRAL SPECIES ENSGT00950000183183.b.b #22 Tetraodon MODERN SPECIES 26 si:dkeyp-92c9.2 (ENSTNIG00000019642) ENSTNIG00000019615 ENSTNIG00000019585 ENSTNIG00000019821 ENSTNIG00000019685 kctd15a (ENSTNIG00000019575) ENSTNIG00000019535 ENSTNIG00000019691 ENSTNIG00000019655 hsd17b2 (ENSTNIG00000019720) gpia (ENSTNIG00000019788) ENSTNIG00000019704 abcg2c (ENSTNIG00000019778) ENSTNIG00000019779 arpc1a (ENSTNIG00000019780) #21 arpc1b (ENSTNIG00000019781) #22 DNAL1 (ENSTNIG00000019602) spra (ENSTNIG00000019699) spra (ENSTNIG00000019718) spra (ENSTNIG00000019712) pnp4a (ENSTNIG00000019818) ENSTNIG00000000781 srd5a2a (ENSTNIG00000019827) ENSTNIG00000019815 RAP1GAP (ENSTNIG00000019473) ENSTNIG00000019482 ENSTNIG00000019813 ENSTNIG00000019639 ENSTNIG00000019770 ENSTNIG00000019505 ENSTNIG00000019701 Eupecaria_A ANCESTRAL SPECIES 3 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Ballan wrasse MODERN SPECIES 134 ENSLBEG00000006859 hapstr1b (ENSLBEG00000006785) ENSLBEG00000006758 abcg2b (ENSLBEG00000006592) arpc1a (ENSLBEG00000006497) #21 arpc1b (ENSLBEG00000006423) #22 MMD2 (ENSLBEG00000006373) radil (ENSLBEG00000006244) foxk1 (ENSLBEG00000006213) cyp3a65 (ENSLBEG00000006148) ##34 ENSLBEG00000006109 ENSLBEG00000006075 ENSLBEG00000005862 ##34 GPANK1 (ENSLBEG00000005751) ENSLBEG00000005715 SDK1 (ENSLBEG00000005528) GNA12 (ENSLBEG00000005466) ENSLBEG00000005440 ENSLBEG00000005419 EIF3B (ENSLBEG00000005233) ENSLBEG00000005159 Eupecaria_B ANCESTRAL SPECIES 1 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Perciformes ANCESTRAL SPECIES 2 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Cottioidei ANCESTRAL SPECIES 3 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Lumpfish MODERN SPECIES ENSCLMG00005000733 ENSCLMG00005000735 fbxl18 (ENSCLMG00005000737) PTCD1 (ENSCLMG00005000738) zgc:112980 (ENSCLMG00005000739) smcr8b (ENSCLMG00005000742) mief2 (ENSCLMG00005000744) alkbh5 (ENSCLMG00005000745) ENSCLMG00005000746 ENSCLMG00005000750 hapstr1b (ENSCLMG00005000752) abcg2b (ENSCLMG00005000753) ENSCLMG00005000755 ENSCLMG00005000756 arpc1a (ENSCLMG00005000757) #21 arpc1b (ENSCLMG00005000761) #22 MMD2 (ENSCLMG00005000764) radil (ENSCLMG00005000793) foxk1 (ENSCLMG00005000801) cyp3a65 (ENSCLMG00005000805) ##34 ENSCLMG00005000993 ##34 ENSCLMG00005001049 ENSCLMG00005001055 SDK1 (ENSCLMG00005001061) GNA12 (ENSCLMG00005001065) ENSCLMG00005001083 ENSCLMG00005002523 EIF3B (ENSCLMG00005002524) brat1 (ENSCLMG00005002526) grapb (ENSCLMG00005002527) SLC5A10 (ENSCLMG00005002529) Stickleback MODERN SPECIES 4 pin1 (ENSGACG00000016585) ENSGACG00000016589 ENSGACG00000016593 fbxl18 (ENSGACG00000016604) ENSGACG00000016606 PTCD1 (ENSGACG00000016607) zgc:112980 (ENSGACG00000016610) smcr8b (ENSGACG00000016613) mief2 (ENSGACG00000016616) alkbh5 (ENSGACG00000016621) MYO15A (ENSGACG00000016622) ENSGACG00000016632 hapstr1b (ENSGACG00000016635) abcg2b (ENSGACG00000016636) arpc1a (ENSGACG00000016638) #21 arpc1b (ENSGACG00000016657) #22 MMD2 (ENSGACG00000016661) radil (ENSGACG00000016663) foxk1 (ENSGACG00000016666) cyp3a65 (ENSGACG00000016669) ##34 cyp3a65 (ENSGACG00000016687) ##34 cyp3a65 (ENSGACG00000016696) ##34 ENSGACG00000016703 ENSGACG00000016708 SDK1 (ENSGACG00000016711) GNA12 (ENSGACG00000016723) ENSGACG00000016726 ENSGACG00000016733 EIF3B (ENSGACG00000016738) brat1 (ENSGACG00000016753) ENSGACG00000016754 Perciformes_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Channel bull blenny MODERN SPECIES ENSCGOG00000010781 ENSCGOG00000010779 ENSCGOG00000009661 fbxl18 (ENSCGOG00000009638) PTCD1 (ENSCGOG00000009634) zgc:112980 (ENSCGOG00000009597) smcr8b (ENSCGOG00000009595) mief2 (ENSCGOG00000009590) alkbh5 (ENSCGOG00000009585) ENSCGOG00000009575 ENSCGOG00000007729 hapstr1b (ENSCGOG00000007685) abcg2b (ENSCGOG00000007674) ENSCGOG00000007672 ENSCGOG00000007670 arpc1b (ENSCGOG00000007140) #22 MMD2 (ENSCGOG00000007124) radil (ENSCGOG00000007121) foxk1 (ENSCGOG00000007118) cyp3a65 (ENSCGOG00000006100) ##34 cyp3a65 (ENSCGOG00000006065) ##34 ENSCGOG00000006055 ENSCGOG00000006054 ENSCGOG00000005335 GNA12 (ENSCGOG00000005315) ENSCGOG00000004015 ENSCGOG00000003992 EIF3B (ENSCGOG00000003791) brat1 (ENSCGOG00000003784) grapb (ENSCGOG00000003782) FAM83G (ENSCGOG00000003781) Pike perch MODERN SPECIES 8 pin1 (ENSSLUG00000001321) ENSSLUG00000001326 ENSSLUG00000001329 fbxl18 (ENSSLUG00000001338) PTCD1 (ENSSLUG00000001340) zgc:112980 (ENSSLUG00000001343) smcr8b (ENSSLUG00000001345) mief2 (ENSSLUG00000001349) alkbh5 (ENSSLUG00000001351) ENSSLUG00000001354 ENSSLUG00000001376 hapstr1b (ENSSLUG00000001410) abcg2c (ENSSLUG00000001414) ENSSLUG00000001417 ENSSLUG00000001418 arpc1b (ENSSLUG00000001422) #22 MMD2 (ENSSLUG00000001470) foxk1 (ENSSLUG00000005007) cyp3a65 (ENSSLUG00000005150) ##34 ENSSLUG00000005723 ENSSLUG00000005730 SDK1 (ENSSLUG00000005824) GNA12 (ENSSLUG00000006292) xylt1 (ENSSLUG00000006301) NOMO1 (ENSSLUG00000006362) TMC7 (ENSSLUG00000006618) ENSSLUG00000006663 gsg1l (ENSSLUG00000006694) sec23b (ENSSLUG00000006756) ccdc85al (ENSSLUG00000006822) bcl11ab (ENSSLUG00000006832) Eupecaria_C ANCESTRAL SPECIES 14 ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Gilthead seabream MODERN SPECIES ENSSAUG00010005086 ENSSAUG00010005089 ENSSAUG00010005095 fbxl18 (ENSSAUG00010005101) PTCD1 (ENSSAUG00010005102) smcr8b (ENSSAUG00010005103) mief2 (ENSSAUG00010005104) alkbh5 (ENSSAUG00010002796) MYO15A (ENSSAUG00010002828) ENSSAUG00010002933 ENSSAUG00010002979 cyp3a65 (ENSSAUG00010003022) ##34 hapstr1b (ENSSAUG00010003278) abcg2c (ENSSAUG00010003305) ENSSAUG00010003975 arpc1b (ENSSAUG00010003984) #22 MMD2 (ENSSAUG00010004018) radil (ENSSAUG00010004022) foxk1 (ENSSAUG00010004028) cyp3a65 (ENSSAUG00010004036) ##34 cyp3a65 (ENSSAUG00010004044) ##34 ENSSAUG00010004052 ENSSAUG00010004054 SDK1 (ENSSAUG00010004208) GNA12 (ENSSAUG00010004457) ENSSAUG00010004498 ENSSAUG00010006364 EIF3B (ENSSAUG00010006387) brat1 (ENSSAUG00010008044) grapb (ENSSAUG00010008047) SLC5A10 (ENSSAUG00010008059) Eupercaria_incertae_sedis ANCESTRAL SPECIES 13 ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00940000177139 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Large yellow croaker MODERN SPECIES 481 VAV1 (ENSLCRG00005003958) UBL5 (ENSLCRG00005004620) pin1 (ENSLCRG00005002404) ENSLCRG00005002419 ENSLCRG00005002431 fbxl18 (ENSLCRG00005002447) PTCD1 (ENSLCRG00005002470) zgc:112980 (ENSLCRG00005002485) smcr8b (ENSLCRG00005002493) mief2 (ENSLCRG00005002499) alkbh5 (ENSLCRG00005002503) ENSLCRG00005002595 hapstr1b (ENSLCRG00005002980) abcg2b (ENSLCRG00005003006) ENSLCRG00005004023 arpc1b (ENSLCRG00005004024) #22 MMD2 (ENSLCRG00005004033) radil (ENSLCRG00005004034) foxk1 (ENSLCRG00005004041) cyp3a65 (ENSLCRG00005004071) ##34 ENSLCRG00005006999 ENSLCRG00005007000 ENSLCRG00005007001 SDK1 (ENSLCRG00005007047) GNA12 (ENSLCRG00005010451) ENSLCRG00005010458 ENSLCRG00005011416 ENSLCRG00005011421 EIF3B (ENSLCRG00005011432) brat1 (ENSLCRG00005011468) ENSLCRG00005011472 European seabass MODERN SPECIES 20 ENSDLAG00005018416 ENSDLAG00005005172 ENSDLAG00005005392 ENSDLAG00005018387 ENSDLAG00005018358 ENSDLAG00005018351 zgc:112980 (ENSDLAG00005018308) smcr8b (ENSDLAG00005018266) mief2 (ENSDLAG00005018251) alkbh5 (ENSDLAG00005018238) ENSDLAG00005032865 ENSDLAG00005017302 ENSDLAG00005033020 abcg2b (ENSDLAG00005017097) ENSDLAG00005017086 ENSDLAG00005016847 #22 MMD2 (ENSDLAG00005032987) RADIL (ENSDLAG00005016712) FOXK1 (ENSDLAG00005016699) ENSDLAG00005015585 ##34 ENSDLAG00005028502 ##34 ENSDLAG00005032476 ENSDLAG00005015517 ENSDLAG00005014270 GNA12 (ENSDLAG00005031995) ENSDLAG00005013741 ENSDLAG00005013724 ENSDLAG00005013688 brat1 (ENSDLAG00005013680) grapb (ENSDLAG00005032133) ENSDLAG00005013648 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Carangaria ANCESTRAL SPECIES ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Pleuronectoidei ANCESTRAL SPECIES 26 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00940000170782 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Tongue sole MODERN SPECIES 19 fbxl18 (ENSCSEG00000002382) PTCD1 (ENSCSEG00000002378) zgc:112980 (ENSCSEG00000002362) smcr8b (ENSCSEG00000002336) mief2 (ENSCSEG00000002331) alkbh5 (ENSCSEG00000002327) ENSCSEG00000002317 ENSCSEG00000002307 ENSCSEG00000002302 ENSCSEG00000002295 hapstr1b (ENSCSEG00000002290) abcg2c (ENSCSEG00000002283) ENSCSEG00000002280 ENSCSEG00000002276 arpc1a (ENSCSEG00000002272) #21 arpc1b (ENSCSEG00000002251) #22 MMD2 (ENSCSEG00000002229) radil (ENSCSEG00000002195) cyp3a65 (ENSCSEG00000002180) ##34 cyp3a65 (ENSCSEG00000002174) ##34 foxk1 (ENSCSEG00000002165) ENSCSEG00000002162 ENSCSEG00000002158 ENSCSEG00000002155 ENSCSEG00000002149 rdh8b (ENSCSEG00000002146) ENSCSEG00000002139 PLK1 (ENSCSEG00000002130) ENSCSEG00000002128 ENSCSEG00000002122 ttyh3b (ENSCSEG00000002117) Turbot MODERN SPECIES 20 ENSSMAG00000000242 ENSSMAG00000029471 actb1 (ENSSMAG00000000233) fbxl18 (ENSSMAG00000000229) ENSSMAG00000000218 ENSSMAG00000000211 smcr8b (ENSSMAG00000000203) mief2 (ENSSMAG00000000199) alkbh5 (ENSSMAG00000000195) ENSSMAG00000030960 ENSSMAG00000000181 ENSSMAG00000033041 ENSSMAG00000000164 ENSSMAG00000000159 ENSSMAG00000000155 ENSSMAG00000000139 #22 ENSSMAG00000000119 ENSSMAG00000000104 ENSSMAG00000021272 ENSSMAG00000021273 ENSSMAG00000029122 ENSSMAG00000021270 ENSSMAG00000026886 GNA12 (ENSSMAG00000021269) ENSSMAG00000021268 ENSSMAG00000021267 ENSSMAG00000021266 ENSSMAG00000021264 ENSSMAG00000025929 grapb (ENSSMAG00000021262) ENSSMAG00000021261 Carangaria_A ANCESTRAL SPECIES 14 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Seriola ANCESTRAL SPECIES 18 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Greater amberjack MODERN SPECIES 13 ENSSDUG00000015634 fbxl18 (ENSSDUG00000015649) PTCD1 (ENSSDUG00000015671) smcr8b (ENSSDUG00000015863) mief2 (ENSSDUG00000015872) alkbh5 (ENSSDUG00000015880) ENSSDUG00000015899 ENSSDUG00000015946 ENSSDUG00000015968 abcg2b (ENSSDUG00000016042) hapstr1b (ENSSDUG00000016096) ENSSDUG00000016114 ENSSDUG00000016122 ENSSDUG00000016146 arpc1a (ENSSDUG00000016164) #21 arpc1b (ENSSDUG00000016183) #22 MMD2 (ENSSDUG00000016202) radil (ENSSDUG00000016227) foxk1 (ENSSDUG00000016301) cyp3a65 (ENSSDUG00000016319) ##34 cyp3a65 (ENSSDUG00000016348) ##34 ENSSDUG00000016390 ENSSDUG00000016450 SDK1 (ENSSDUG00000016492) GNA12 (ENSSDUG00000016705) ENSSDUG00000016726 ENSSDUG00000016749 EIF3B (ENSSDUG00000016761) brat1 (ENSSDUG00000016855) grapb (ENSSDUG00000016867) SLC5A10 (ENSSDUG00000016895) Yellowtail amberjack MODERN SPECIES 2966 mief2 (ENSSLDG00000022315) alkbh5 (ENSSLDG00000022333) ENSSLDG00000022350 ENSSLDG00000022381 hapstr1b (ENSSLDG00000022404) abcg2c (ENSSLDG00000022423) ENSSLDG00000022449 ENSSLDG00000022457 arpc1a (ENSSLDG00000022471) #21 arpc1b (ENSSLDG00000022510) #22 MMD2 (ENSSLDG00000022535) radil (ENSSLDG00000022549) foxk1 (ENSSLDG00000022594) cyp3a65 (ENSSLDG00000022618) ##34 cyp3a65 (ENSSLDG00000022644) ##34 ENSSLDG00000022692 ENSSLDG00000022703 ENSSLDG00000022721 ENSSLDG00000022787 GNA12 (ENSSLDG00000022802) ENSSLDG00000022830 ENSSLDG00000022862 EIF3B (ENSSLDG00000022874) brat1 (ENSSLDG00000022929) grapb (ENSSLDG00000022938) Barramundi perch MODERN SPECIES 399 ENSLCAG00010007517 ENSLCAG00010007316 fbxl18 (ENSLCAG00010007244) PTCD1 (ENSLCAG00010007233) zgc:112980 (ENSLCAG00010007222) smcr8b (ENSLCAG00010007212) mief2 (ENSLCAG00010007204) alkbh5 (ENSLCAG00010007194) ENSLCAG00010007181 ENSLCAG00010007173 ENSLCAG00010007104 hapstr1b (ENSLCAG00010007072) abcg2c (ENSLCAG00010007066) ENSLCAG00010007061 ENSLCAG00010007057 arpc1b (ENSLCAG00010007010) #22 MMD2 (ENSLCAG00010006990) foxk1 (ENSLCAG00010006979) cyp3a65 (ENSLCAG00010006846) ##34 cyp3a65 (ENSLCAG00010006785) ##34 GPANK1 (ENSLCAG00010006760) Anabantaria ANCESTRAL SPECIES 1 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Anabantoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000159416 Siamese fighting fish MODERN SPECIES pin1 (ENSBSLG00000000886) ENSBSLG00000000889 ENSBSLG00000000894 ENSBSLG00000000897 actb1 (ENSBSLG00000000900) fbxl18 (ENSBSLG00000000904) PTCD1 (ENSBSLG00000000908) ENSBSLG00000000913 smcr8b (ENSBSLG00000000921) mief2 (ENSBSLG00000000928) alkbh5 (ENSBSLG00000000934) ENSBSLG00000000961 hapstr1b (ENSBSLG00000000964) abcg2c (ENSBSLG00000000975) ENSBSLG00000001006 arpc1b (ENSBSLG00000001009) #22 MMD2 (ENSBSLG00000001012) radil (ENSBSLG00000001017) foxk1 (ENSBSLG00000001019) cyp3a65 (ENSBSLG00000001062) ##34 ENSBSLG00000001153 ##34 ENSBSLG00000001154 ENSBSLG00000001155 ENSBSLG00000001161 ENSBSLG00000001170 BFAR (ENSBSLG00000001172) txndc11 (ENSBSLG00000001173) ENSBSLG00000001174 ENSBSLG00000001175 mad1l1 (ENSBSLG00000001222) ELFN1 (ENSBSLG00000001249) Climbing perch MODERN SPECIES ENSATEG00000006475 ENSATEG00000006970 ENSATEG00000006980 fbxl18 (ENSATEG00000007008) ENSATEG00000007016 zgc:112980 (ENSATEG00000007024) smcr8b (ENSATEG00000007148) mief2 (ENSATEG00000007155) alkbh5 (ENSATEG00000007186) ENSATEG00000007193 ENSATEG00000007389 ENSATEG00000007469 abcg2b (ENSATEG00000007498) ENSATEG00000007784 ENSATEG00000028845 ENSATEG00000007824 #22 MMD2 (ENSATEG00000007894) RADIL (ENSATEG00000007941) FOXK1 (ENSATEG00000008101) ENSATEG00000008115 ##34 ENSATEG00000008180 ##34 ENSATEG00000026006 ENSATEG00000008273 ENSATEG00000008331 GNA12 (ENSATEG00000008569) ENSATEG00000008597 ENSATEG00000008612 ENSATEG00000008626 brat1 (ENSATEG00000008708) ENSATEG00000008737 ENSATEG00000008766 Cod MODERN SPECIES 16 VAV1 (ENSGMOG00000007593) ENSGMOG00000007612 ENSGMOG00000007618 ENSGMOG00000037081 actb1 (ENSGMOG00000023192) fbxl18 (ENSGMOG00000007631) ENSGMOG00000007639 ENSGMOG00000007653 smcr8b (ENSGMOG00000033083) mief2 (ENSGMOG00000007684) alkbh5 (ENSGMOG00000007690) ENSGMOG00000007731 ENSGMOG00000036131 ENSGMOG00000007752 ENSGMOG00000030890 ENSGMOG00000007758 #22 ENSGMOG00000007771 ENSGMOG00000027409 FOXK1 (ENSGMOG00000007792) ENSGMOG00000035483 ENSGMOG00000007797 ENSGMOG00000026844 SDK1 (ENSGMOG00000007808) ENSGMOG00000025657 GNA12 (ENSGMOG00000010559) ENSGMOG00000024230 ENSGMOG00000006029 ENSGMOG00000006082 ENSGMOG00000006100 brat1 (ENSGMOG00000006129) ENSGMOG00000006164 Protacanthopterygii ANCESTRAL SPECIES 117 ENSGT00940000159613 ENSGT00940000159788.a.b ENSGT00390000013443.c.j ENSGT00940000159005.c.b ENSGT01050000244893.c.a.a.b ENSGT00940000155217.o.b.c.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000157636 ENSGT00940000157747.c.b ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00950000182803.A.a.a.c.b ENSGT00550000075029 ENSGT00530000064157.a Northern pike MODERN SPECIES 8 ENSELUG00000027387 ENSELUG00000017972 ENSELUG00000030419 ENSELUG00000032838 PRKCB (ENSELUG00000018024) ENSELUG00000032362 ENSELUG00000009611 ENSELUG00000031788 socs1b (ENSELUG00000031681) ENSELUG00000026591 ENSELUG00000010939 hapstr1b (ENSELUG00000033582) abcg2c (ENSELUG00000010845) ENSELUG00000010808 ENSELUG00000033499 arpc1b (ENSELUG00000010722) #22 MMD2 (ENSELUG00000025771) radil (ENSELUG00000010665) foxk1 (ENSELUG00000010530) cyp3a65 (ENSELUG00000010319) ##34 cyp3a65 (ENSELUG00000010202) ##34 ENSELUG00000009653 ENSELUG00000009633 ENSELUG00000001232 ENSELUG00000010967 ENSELUG00000009603 ENSELUG00000009599 ENSELUG00000009553 ENSELUG00000009543 ENSELUG00000033639 ENSELUG00000009485 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 568 ENSGT01050000244893.c.a.a.b ENSGT00940000155217.o.b.c.b.b.a ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j #21 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.a ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.b.a.b.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b ##34 ENSGT00390000003292 Huchen MODERN SPECIES 4148 ENSHHUG00000029821 #22 ENSHHUG00000029819 Salmoninae_a ANCESTRAL SPECIES 190 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 ENSGT00940000177139.h.a ENSGT00950000183183.b.a.j.b #21 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.a ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.b.a.b.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b ##34 ENSGT00390000003292.j.a Salmo DUPLICATION Salmo ANCESTRAL SPECIES 166 ENSGT00940000155217.o.b.c.b.b.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a.h ENSGT00940000162658.b ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 ENSGT00940000165949 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 ENSGT00950000183183.b.b.i.a.a #22 ENSGT00940000157972.d.a.b ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b.b ##34 ENSGT00390000003292.j.a River trout MODERN SPECIES 215 ENSSTUG00000036312 ENSSTUG00000036318 arpc1a (ENSSTUG00000036329) #21 arpc1b (ENSSTUG00000036394) #22 ENSSTUG00000036434 MMD2 (ENSSTUG00000036436) ENSSTUG00000036440 MMD2 (ENSSTUG00000036442) arpc1b (ENSSTUG00000036451) #22 ENSSTUG00000036539 arpc1a (ENSSTUG00000036547) #21 ENSSTUG00000036554 Atlantic salmon MODERN SPECIES 11 ENSSSAG00000110892 ENSSSAG00000120989 ENSSSAG00000107253 ENSSSAG00000095195 ENSSSAG00000000248 ENSSSAG00000094876 ENSSSAG00000118171 ENSSSAG00000103846 ENSSSAG00000100382 hapstr1b (ENSSSAG00000000903) ENSSSAG00000102684 abcg2b (ENSSSAG00000000889) ENSSSAG00000007849 #21 ENSSSAG00000100569 ENSSSAG00000100526 arc1b (ENSSSAG00000089766) #22 MMD2 (ENSSSAG00000110000) RADIL (ENSSSAG00000092488) FOXK1 (ENSSSAG00000118397) ENSSSAG00000003450 ##34 ENSSSAG00000009258 ##34 ENSSSAG00000087972 ##34 ENSSSAG00000015381 ##34 ENSSSAG00000083136 ENSSSAG00000003478 ENSSSAG00000000629 ENSSSAG00000116311 ENSSSAG00000089701 ENSSSAG00000118491 ENSSSAG00000085649 ENSSSAG00000114740 Salmo ANCESTRAL SPECIES 314 ENSGT00390000002886.a.a.a.g ENSGT00940000177139.h.a ENSGT00950000183183.b.a.j.b #21 ENSGT00950000183183.b.b.i.a.b #22 ENSGT00940000157972.d.a.a River trout MODERN SPECIES 215 ENSSTUG00000036554 arpc1a (ENSSTUG00000036547) #21 ENSSTUG00000036539 arpc1b (ENSSTUG00000036451) #22 MMD2 (ENSSTUG00000036442) ENSSTUG00000036440 MMD2 (ENSSTUG00000036436) ENSSTUG00000036434 arpc1b (ENSSTUG00000036394) #22 arpc1a (ENSSTUG00000036329) #21 ENSSTUG00000036318 ENSSTUG00000036312 Atlantic salmon MODERN SPECIES 3 ENSSSAG00000115193 ENSSSAG00000119092 ENSSSAG00000117076 ENSSSAG00000117395 ENSSSAG00000085436 ENSSSAG00000103844 ENSSSAG00000058606 ENSSSAG00000007871 ENSSSAG00000007880 GRIN2A (ENSSSAG00000090079) ENSSSAG00000120850 hapstr1b (ENSSSAG00000059059) ENSSSAG00000114823 ENSSSAG00000000860 #21 ENSSSAG00000120103 ENSSSAG00000007843 #22 MMD2 (ENSSSAG00000087712) RADIL (ENSSSAG00000102000) FOXK1 (ENSSSAG00000098143) ENSSSAG00000003554 ##34 ENSSSAG00000003527 ##34 ENSSSAG00000098549 ENSSSAG00000007829 ENSSSAG00000001064 ENSSSAG00000110930 ENSSSAG00000000495 ENSSSAG00000008996 ENSSSAG00000083111 ENSSSAG00000116065 ENSSSAG00000110834 ENSSSAG00000005328 Oncorhynchus ANCESTRAL SPECIES 526 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.b Oncorhynchus_a ANCESTRAL SPECIES 678 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.b Coho salmon MODERN SPECIES 1374 ENSOKIG00005048943 arpc1a (ENSOKIG00005048939) #21 ENSOKIG00005048936 arpc1b (ENSOKIG00005048917) #22 ENSOKIG00005048907 ENSOKIG00005048905 ENSOKIG00005048898 FOXK1 (ENSOKIG00005048892) ENSOKIG00005048883 ##34 ENSOKIG00005048880 Salmoninae ANCESTRAL SPECIES ENSGT00950000183183.b.b.i.b #22 Huchen MODERN SPECIES 8066 arpc1b (ENSHHUG00000000515) #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183183.b.b.i.b #22 Oncorhynchus ANCESTRAL SPECIES 137 ENSGT01050000244893.c.a.a.b ENSGT01020000231775 ENSGT00940000155217.o.b.c.b.b.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 ENSGT00950000183183.b.b.i.b #22 ENSGT00940000157972.d.a ENSGT00940000159507.f Oncorhynchus_a ANCESTRAL SPECIES 397 ENSGT00950000183183.b.b.i.b #22 ENSGT00940000157972.d.a ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.b ##34 Coho salmon MODERN SPECIES 30 ENSOKIG00005040767 UNCX (ENSOKIG00005040815) ENSOKIG00005040856 ENSOKIG00005040879 PRKCB (ENSOKIG00005040988) ENSOKIG00005041054 socs1b (ENSOKIG00005026886) ENSOKIG00005026890 ENSOKIG00005026902 ENSOKIG00005026917 ENSOKIG00005026938 ENSOKIG00005026976 hapstr1b (ENSOKIG00005026999) ENSOKIG00005027061 ENSOKIG00005027725 ARPC1B (ENSOKIG00005027768) #22 MMD2 (ENSOKIG00005027861) foxk1 (ENSOKIG00005027972) ENSOKIG00005028017 ##34 ENSOKIG00005028508 ##34 ENSOKIG00005029463 ENSOKIG00005029480 smcr8b (ENSOKIG00005029534) ENSOKIG00005029552 alkbh5 (ENSOKIG00005029567) ENSOKIG00005029581 ENSOKIG00005029602 ENSOKIG00005029612 ENSOKIG00005029646 ENSOKIG00005029699 FBXL18 (ENSOKIG00005029708) Salmoninae ANCESTRAL SPECIES ENSGT00950000183183.b.b.j #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183183.b.b.j #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000183183.b.b.j #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000183183.b.b.j #22 Chinook salmon MODERN SPECIES 1815 ENSOTSG00005019455 #22 Elephant shark MODERN SPECIES 1639 PTCD1 (ENSCMIG00000017705) cpsf4 (ENSCMIG00000017708) #26 ENSCMIG00000017710 slc29a4a (ENSCMIG00000017711) ENSCMIG00000017715 TNRC18 (ENSCMIG00000017724) fbxl18 (ENSCMIG00000017737) fscn1a (ENSCMIG00000017739) ENSCMIG00000017741 ENSCMIG00000017845 kpna7 (ENSCMIG00000018017) #20 ENSCMIG00000018097 smurf1 (ENSCMIG00000018269) #19 ENSCMIG00000018292 arpc1a (ENSCMIG00000018301) #21 arpc1b (ENSCMIG00000018310) #22 wipi2 (ENSCMIG00000018316) ENSCMIG00000018328 radil (ENSCMIG00000018329) Gnathostomata ANCESTRAL SPECIES 172 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b ENSGT00950000182960.a.a ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 Euteleostomi ANCESTRAL SPECIES 77 ENSGT00390000004836 ENSGT00960000186809 ENSGT00940000159664 ENSGT00940000164958 ENSGT00940000155556.c ENSGT00940000157100 ENSGT01050000244814.a.b ENSGT01080000257338.A.b ENSGT00940000158127 ENSGT00940000159441 ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000156268.a.a ENSGT00940000161336 ENSGT00390000004323.b ENSGT00390000014667 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00730000111191 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00940000156854 ENSGT00940000168310 ENSGT00940000154322.C Actinopterygii ANCESTRAL SPECIES 54 ENSGT00940000164726 ENSGT00940000164900 ENSGT00940000169412 ENSGT00940000165096.b.b ENSGT00940000156922.b.a ENSGT00940000164958 ENSGT00940000155556.c ENSGT00940000157100 ENSGT00940000154768.A.b ENSGT01050000244814.a.b ENSGT01080000257338.A.b ENSGT00940000158127 ENSGT00940000159441 ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000156268.a.a ENSGT00940000163461.a.a.a.a ENSGT00940000163461.a.a.a.b ENSGT00940000161336 ENSGT00390000004323.b ENSGT00390000014667 ENSGT00940000168279 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00730000111191 ENSGT00940000154076.C.d ENSGT00940000159717 Neopterygii ANCESTRAL SPECIES 6 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.b ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.a.a ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000165400 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000158127 ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000162543 ENSGT00390000004323.b ENSGT00940000168279 ENSGT00390000014667 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00730000111191 ENSGT00940000154076.C.d ENSGT00940000159717 ENSGT00940000156854 ENSGT00940000176040 ENSGT00940000164189 Osteoglossocephalai ANCESTRAL SPECIES 24 ENSGT00940000156922.b.a ENSGT00940000164958 ENSGT00940000155556.c ENSGT00940000157100.b ENSGT01050000244814.a.b.b ENSGT00940000166074.A ENSGT01090000260189 ENSGT00940000157100.a ENSGT00940000154768.A.b ENSGT01050000244814.a.b.a ENSGT01080000257338.A.b ENSGT00940000158127 ENSGT00940000166074.B ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000156268.a.b ENSGT00390000014667 ENSGT00940000154744 ENSGT00950000182979.a.b.b.b.a.c ENSGT00940000154076.A ENSGT00940000159717 ENSGT00940000154076.C.d ENSGT00940000156854.s ENSGT00940000162720.b.a.a.a ENSGT00940000177272 Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 99 ENSGT00950000182957.b.a.b.a.b.b ENSGT00950000182957.b.a.b.a.b.a ENSGT00950000182898.a.b.d ENSGT00940000157099.v.b ENSGT00390000015109 ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b.b ENSGT00510000048032 ENSGT00940000165400.q ENSGT00940000158690.c #19 ENSGT00940000160705.C.b.c.b ENSGT00950000183183.b.a.a #21 ENSGT00950000183183.b.b.b #22 ENSGT00940000155537.b ENSGT00940000157972.a ENSGT00940000159293.g ENSGT00940000159507.h ENSGT00950000182958.b.a.a.a.b ##34 ENSGT00940000157747.b ENSGT00940000158573.f ENSGT00940000157636 ENSGT00390000017551 ENSGT00550000074913.f ENSGT00940000163734 ENSGT00940000158717.g ENSGT00950000183060.a.a.d.a ENSGT00940000163679 Asian bonytongue MODERN SPECIES 12 USP31 (ENSSFOG00015019296) hs3st2 (ENSSFOG00015005525) HS3ST4 (ENSSFOG00015024007) ears2 (ENSSFOG00015019361) ENSSFOG00015003116 ENSSFOG00015003168 SLC29A4 (ENSSFOG00015003203) TNRC18 (ENSSFOG00015003261) fbxl18 (ENSSFOG00015003278) ENSSFOG00015003294 FSCN1 (ENSSFOG00015028791) RNF216 (ENSSFOG00015003365) ENSSFOG00015003373 SMURF1 (ENSSFOG00015003386) #19 ENSSFOG00015003478 ARPC1A (ENSSFOG00015003595) #21 arpc1b (ENSSFOG00015003662) #22 WIPI2 (ENSSFOG00015003706) MMD2 (ENSSFOG00015030866) radil (ENSSFOG00015003792) FOXK1 (ENSSFOG00015003826) cyp3a65 (ENSSFOG00015003914) ##34 ENSSFOG00015004677 ##34 cyp3a65 (ENSSFOG00015005145) ##34 SDK1 (ENSSFOG00015005050) CARD11 (ENSSFOG00015006221) gna12a (ENSSFOG00015029829) brat1 (ENSSFOG00015006367) EIF3B (ENSSFOG00015006390) ENSSFOG00015006461 ENSSFOG00015027126 P. kingsleyae MODERN SPECIES 144 ENSPKIG00000010234 ENSPKIG00000010290 ENSPKIG00000010347 fbxl18 (ENSPKIG00000010437) ENSPKIG00000010452 fscn1a (ENSPKIG00000010464) RNF216 (ENSPKIG00000010505) ENSPKIG00000010562 ENSPKIG00000010588 SMURF1 (ENSPKIG00000010654) #19 ARPC1A (ENSPKIG00000010763) #21 arpc1b (ENSPKIG00000010821) #22 WIPI2 (ENSPKIG00000010854) MMD2 (ENSPKIG00000010889) radil (ENSPKIG00000010919) FOXK1 (ENSPKIG00000010956) cyp3a65 (ENSPKIG00000010991) ##34 SDK1 (ENSPKIG00000011127) CARD11 (ENSPKIG00000011579) GNA12 (ENSPKIG00000011669) brat1 (ENSPKIG00000011698) EIF3B (ENSPKIG00000011735) ENSPKIG00000011782 ENSPKIG00000011823 lfng (ENSPKIG00000011844) ttyh3b (ENSPKIG00000011905) Osteoglossiformes ANCESTRAL SPECIES 98 ENSGT00940000159805.d ENSGT00940000159038.a.a ENSGT00940000159038.a.b ENSGT00940000164923.a.b ENSGT00390000012483 ENSGT00520000055626.b ENSGT00630000091000 ENSGT00390000000050 ENSGT00950000182898.a.b.c ENSGT00940000157099.u ENSGT00940000157099.v.a ENSGT00950000183157.a.a.b.a ENSGT01030000234534.C ENSGT00940000158690.d #19 ENSGT00940000160705.C.b.c.a ENSGT00950000183183.b.a.b #21 ENSGT00950000183183.b.b.a #22 ENSGT00940000155537.a ENSGT00940000157972.b ENSGT00940000159293.h ENSGT00390000017592 ENSGT00940000159507.g ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.a ENSGT00940000158573.e ENSGT00550000074913.e ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717.h ENSGT00950000183060.a.a.d.b P. kingsleyae MODERN SPECIES 267 hsd3b7 (ENSPKIG00000017706) TBC1D10B (ENSPKIG00000017726) mylpfa (ENSPKIG00000017761) pheta2 (ENSPKIG00000017787) cd2bp2 (ENSPKIG00000017798) ENSPKIG00000017828 rusf1 (ENSPKIG00000017868) slc29a4a (ENSPKIG00000017922) ENSPKIG00000017952 ENSPKIG00000017991 ENSPKIG00000018028 FSCN1 (ENSPKIG00000018067) ENSPKIG00000018080 SMURF1 (ENSPKIG00000018100) #19 ENSPKIG00000018167 arpc1a (ENSPKIG00000018244) #21 arpc1b (ENSPKIG00000018299) #22 wipi2 (ENSPKIG00000018359) ENSPKIG00000018399 MMD2 (ENSPKIG00000018421) RADIL (ENSPKIG00000018461) ap5z1 (ENSPKIG00000018520) foxk1 (ENSPKIG00000018567) ENSPKIG00000018617 ##34 ENSPKIG00000018703 ##34 ENSPKIG00000018731 ENSPKIG00000018754 ENSPKIG00000018778 ENSPKIG00000018800 gemin8 (ENSPKIG00000018818) ENSPKIG00000018836 Asian bonytongue MODERN SPECIES 18 TBC1D10B (ENSSFOG00015006971) mylpfb (ENSSFOG00015006956) pheta2 (ENSSFOG00015024956) cd2bp2 (ENSSFOG00015006940) ENSSFOG00015006925 ENSSFOG00015032733 rusf1 (ENSSFOG00015006807) slc29a4a (ENSSFOG00015006743) ENSSFOG00015026914 ENSSFOG00015030220 TNRC18 (ENSSFOG00015006692) actb2 (ENSSFOG00015006657) ENSSFOG00015006633 SMURF1 (ENSSFOG00015006534) #19 ENSSFOG00015006391 arpc1a (ENSSFOG00015006328) #21 arpc1b (ENSSFOG00015006288) #22 wipi2 (ENSSFOG00015031380) MMD2 (ENSSFOG00015031989) RADIL (ENSSFOG00015006152) ap5z1 (ENSSFOG00015006120) foxk1 (ENSSFOG00015006080) cyp3c4 (ENSSFOG00015006064) ##34 SDK1 (ENSSFOG00015005958) CARD11 (ENSSFOG00015005860) EIF3B (ENSSFOG00015005824) chst12a (ENSSFOG00015027643) ENSSFOG00015005797 grifin (ENSSFOG00015005785) LFNG (ENSSFOG00015005761) TTYH3 (ENSSFOG00015005724) Clupeocephala ANCESTRAL SPECIES 122 ENSGT00950000182935.B.b.d.b ENSGT00940000167865 ENSGT00930000151032.A ENSGT00390000009298 ENSGT00390000013127.b ENSGT00390000010052.b ENSGT00400000022459 ENSGT00940000153974.A ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00950000183060.a.a.d.b ENSGT00460000041594 ENSGT00390000000341 ENSGT00730000111241 ENSGT00940000161391.a ENSGT00390000000324 Euteleosteomorpha ANCESTRAL SPECIES 171 ENSGT00390000009759 ENSGT00940000159613 ENSGT00940000159788.a.b ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000178055 ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.a.b.b #34 ENSGT00940000157747 ENSGT00940000157636 Acanthomorphata ANCESTRAL SPECIES 39 ENSGT00990000204057 ENSGT00950000182960.a.a.a.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.a.b.b #34 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Euacanthomorphacea ANCESTRAL SPECIES 3 ENSGT00950000182960.a.a.a.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Percomorphaceae ANCESTRAL SPECIES 17 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.t ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Percomorphaceae_C ANCESTRAL SPECIES 3 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Eupercaria ANCESTRAL SPECIES 2 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Tetraodontidae ANCESTRAL SPECIES 16 ENSGT00530000063725.p.e.a ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b.l ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00940000159293.j ENSGT00940000159507 ENSGT00940000170782 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262.l.b ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00550000075029 Fugu MODERN SPECIES 8 pin1 (ENSTRUG00000013606) ENSTRUG00000026524 ENSTRUG00000025485 ACTB (ENSTRUG00000020378) fbxl18 (ENSTRUG00000013524) PTCD1 (ENSTRUG00000013471) zgc:112980 (ENSTRUG00000020136) ENSTRUG00000013435 mief2 (ENSTRUG00000024936) alkbh5 (ENSTRUG00000013324) ENSTRUG00000012978 hapstr1b (ENSTRUG00000012950) abcg2b (ENSTRUG00000012715) ENSTRUG00000020587 ENSTRUG00000028683 arpc1a (ENSTRUG00000012566) #21 radil (ENSTRUG00000012208) foxk1 (ENSTRUG00000012135) ENSTRUG00000012011 ENSTRUG00000024606 ENSTRUG00000022843 SDK1 (ENSTRUG00000011617) GNA12 (ENSTRUG00000011518) ENSTRUG00000011288 ENSTRUG00000011206 ENSTRUG00000025579 ENSTRUG00000010816 SLC5A10 (ENSTRUG00000010594) FAM83G (ENSTRUG00000021374) ENSTRUG00000010314 ENSTRUG00000031183 Tetraodon MODERN SPECIES 26 ENSTNIG00000019682 si:dkeyp-92c9.2 (ENSTNIG00000019642) ENSTNIG00000019615 ENSTNIG00000019585 ENSTNIG00000019821 ENSTNIG00000019685 kctd15a (ENSTNIG00000019575) ENSTNIG00000019535 ENSTNIG00000019691 ENSTNIG00000019655 hsd17b2 (ENSTNIG00000019720) gpia (ENSTNIG00000019788) ENSTNIG00000019704 abcg2c (ENSTNIG00000019778) ENSTNIG00000019779 arpc1a (ENSTNIG00000019780) #21 arpc1b (ENSTNIG00000019781) #22 DNAL1 (ENSTNIG00000019602) spra (ENSTNIG00000019699) spra (ENSTNIG00000019718) spra (ENSTNIG00000019712) pnp4a (ENSTNIG00000019818) ENSTNIG00000000781 srd5a2a (ENSTNIG00000019827) ENSTNIG00000019815 RAP1GAP (ENSTNIG00000019473) ENSTNIG00000019482 ENSTNIG00000019813 ENSTNIG00000019639 ENSTNIG00000019770 ENSTNIG00000019505 Eupecaria_A ANCESTRAL SPECIES 3 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Eupecaria_B ANCESTRAL SPECIES 1 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Perciformes ANCESTRAL SPECIES 2 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Cottioidei ANCESTRAL SPECIES 3 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Lumpfish MODERN SPECIES ENSCLMG00005000732 ENSCLMG00005000733 ENSCLMG00005000735 fbxl18 (ENSCLMG00005000737) PTCD1 (ENSCLMG00005000738) zgc:112980 (ENSCLMG00005000739) smcr8b (ENSCLMG00005000742) mief2 (ENSCLMG00005000744) alkbh5 (ENSCLMG00005000745) ENSCLMG00005000746 ENSCLMG00005000750 hapstr1b (ENSCLMG00005000752) abcg2b (ENSCLMG00005000753) ENSCLMG00005000755 ENSCLMG00005000756 arpc1a (ENSCLMG00005000757) #21 arpc1b (ENSCLMG00005000761) #22 MMD2 (ENSCLMG00005000764) radil (ENSCLMG00005000793) foxk1 (ENSCLMG00005000801) cyp3a65 (ENSCLMG00005000805) ##34 ENSCLMG00005000993 ##34 ENSCLMG00005001049 ENSCLMG00005001055 SDK1 (ENSCLMG00005001061) GNA12 (ENSCLMG00005001065) ENSCLMG00005001083 ENSCLMG00005002523 EIF3B (ENSCLMG00005002524) brat1 (ENSCLMG00005002526) grapb (ENSCLMG00005002527) Stickleback MODERN SPECIES 4 UBL5 (ENSGACG00000016584) pin1 (ENSGACG00000016585) ENSGACG00000016589 ENSGACG00000016593 fbxl18 (ENSGACG00000016604) ENSGACG00000016606 PTCD1 (ENSGACG00000016607) zgc:112980 (ENSGACG00000016610) smcr8b (ENSGACG00000016613) mief2 (ENSGACG00000016616) alkbh5 (ENSGACG00000016621) MYO15A (ENSGACG00000016622) ENSGACG00000016632 hapstr1b (ENSGACG00000016635) abcg2b (ENSGACG00000016636) arpc1a (ENSGACG00000016638) #21 arpc1b (ENSGACG00000016657) #22 MMD2 (ENSGACG00000016661) radil (ENSGACG00000016663) foxk1 (ENSGACG00000016666) cyp3a65 (ENSGACG00000016669) ##34 cyp3a65 (ENSGACG00000016687) ##34 cyp3a65 (ENSGACG00000016696) ##34 ENSGACG00000016703 ENSGACG00000016708 SDK1 (ENSGACG00000016711) GNA12 (ENSGACG00000016723) ENSGACG00000016726 ENSGACG00000016733 EIF3B (ENSGACG00000016738) brat1 (ENSGACG00000016753) Ballan wrasse MODERN SPECIES 134 ENSLBEG00000006859 hapstr1b (ENSLBEG00000006785) ENSLBEG00000006758 abcg2b (ENSLBEG00000006592) arpc1a (ENSLBEG00000006497) #21 arpc1b (ENSLBEG00000006423) #22 MMD2 (ENSLBEG00000006373) radil (ENSLBEG00000006244) foxk1 (ENSLBEG00000006213) cyp3a65 (ENSLBEG00000006148) ##34 ENSLBEG00000006109 ENSLBEG00000006075 ENSLBEG00000005862 ##34 GPANK1 (ENSLBEG00000005751) ENSLBEG00000005715 SDK1 (ENSLBEG00000005528) GNA12 (ENSLBEG00000005466) ENSLBEG00000005440 ENSLBEG00000005419 EIF3B (ENSLBEG00000005233) Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Anabantaria ANCESTRAL SPECIES 1 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a Zig-zag eel MODERN SPECIES ENSMAMG00000007551 ENSMAMG00000007568 ENSMAMG00000007586 fbxl18 (ENSMAMG00000007615) ENSMAMG00000007623 zgc:112980 (ENSMAMG00000007639) smcr8b (ENSMAMG00000007656) mief2 (ENSMAMG00000007672) alkbh5 (ENSMAMG00000007695) ENSMAMG00000025724 ENSMAMG00000007991 ENSMAMG00000008048 abcg2b (ENSMAMG00000008060) ENSMAMG00000024569 ENSMAMG00000008121 ENSMAMG00000008158 #21 MMD2 (ENSMAMG00000008225) RADIL (ENSMAMG00000008255) FOXK1 (ENSMAMG00000008357) ENSMAMG00000008375 ##34 ENSMAMG00000008470 ENSMAMG00000028037 ENSMAMG00000008493 GNA12 (ENSMAMG00000008602) ENSMAMG00000008619 ENSMAMG00000008635 ENSMAMG00000008654 brat1 (ENSMAMG00000008741) ENSMAMG00000008760 ENSMAMG00000008783 FAM83G (ENSMAMG00000008819) Carangaria ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Pleuronectoidei ANCESTRAL SPECIES 26 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00940000170782 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Tongue sole MODERN SPECIES 19 ENSCSEG00000002389 fbxl18 (ENSCSEG00000002382) PTCD1 (ENSCSEG00000002378) zgc:112980 (ENSCSEG00000002362) smcr8b (ENSCSEG00000002336) mief2 (ENSCSEG00000002331) alkbh5 (ENSCSEG00000002327) ENSCSEG00000002317 ENSCSEG00000002307 ENSCSEG00000002302 ENSCSEG00000002295 hapstr1b (ENSCSEG00000002290) abcg2c (ENSCSEG00000002283) ENSCSEG00000002280 ENSCSEG00000002276 arpc1a (ENSCSEG00000002272) #21 arpc1b (ENSCSEG00000002251) #22 MMD2 (ENSCSEG00000002229) radil (ENSCSEG00000002195) cyp3a65 (ENSCSEG00000002180) ##34 cyp3a65 (ENSCSEG00000002174) ##34 foxk1 (ENSCSEG00000002165) ENSCSEG00000002162 ENSCSEG00000002158 ENSCSEG00000002155 ENSCSEG00000002149 rdh8b (ENSCSEG00000002146) ENSCSEG00000002139 PLK1 (ENSCSEG00000002130) ENSCSEG00000002128 ENSCSEG00000002122 Carangaria_A ANCESTRAL SPECIES 14 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Seriola ANCESTRAL SPECIES 18 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Greater amberjack MODERN SPECIES 13 ENSSDUG00000015606 ENSSDUG00000015634 fbxl18 (ENSSDUG00000015649) PTCD1 (ENSSDUG00000015671) smcr8b (ENSSDUG00000015863) mief2 (ENSSDUG00000015872) alkbh5 (ENSSDUG00000015880) ENSSDUG00000015899 ENSSDUG00000015946 ENSSDUG00000015968 abcg2b (ENSSDUG00000016042) hapstr1b (ENSSDUG00000016096) ENSSDUG00000016114 ENSSDUG00000016122 ENSSDUG00000016146 arpc1a (ENSSDUG00000016164) #21 arpc1b (ENSSDUG00000016183) #22 MMD2 (ENSSDUG00000016202) radil (ENSSDUG00000016227) foxk1 (ENSSDUG00000016301) cyp3a65 (ENSSDUG00000016319) ##34 cyp3a65 (ENSSDUG00000016348) ##34 ENSSDUG00000016390 ENSSDUG00000016450 SDK1 (ENSSDUG00000016492) GNA12 (ENSSDUG00000016705) ENSSDUG00000016726 ENSSDUG00000016749 EIF3B (ENSSDUG00000016761) brat1 (ENSSDUG00000016855) grapb (ENSSDUG00000016867) Yellowtail amberjack MODERN SPECIES 2966 mief2 (ENSSLDG00000022315) alkbh5 (ENSSLDG00000022333) ENSSLDG00000022350 ENSSLDG00000022381 hapstr1b (ENSSLDG00000022404) abcg2c (ENSSLDG00000022423) ENSSLDG00000022449 ENSSLDG00000022457 arpc1a (ENSSLDG00000022471) #21 arpc1b (ENSSLDG00000022510) #22 MMD2 (ENSSLDG00000022535) radil (ENSSLDG00000022549) foxk1 (ENSSLDG00000022594) cyp3a65 (ENSSLDG00000022618) ##34 cyp3a65 (ENSSLDG00000022644) ##34 ENSSLDG00000022692 ENSSLDG00000022703 ENSSLDG00000022721 ENSSLDG00000022787 GNA12 (ENSSLDG00000022802) ENSSLDG00000022830 ENSSLDG00000022862 EIF3B (ENSSLDG00000022874) brat1 (ENSSLDG00000022929) Ovalentaria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.b.f ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Atherinomorphae ANCESTRAL SPECIES 20 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Cyprinodontiformes ANCESTRAL SPECIES 18 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Aplocheiloidei ANCESTRAL SPECIES 17 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Mangrove rivulus MODERN SPECIES pin1 (ENSKMAG00000008796) ENSKMAG00000008781 ENSKMAG00000008767 ENSKMAG00000008747 fbxl18 (ENSKMAG00000008729) PTCD1 (ENSKMAG00000008708) ENSKMAG00000008693 ENSKMAG00000008664 mief2 (ENSKMAG00000008644) alkbh5 (ENSKMAG00000008615) MYO15A (ENSKMAG00000008445) ENSKMAG00000008300 hapstr1b (ENSKMAG00000008256) abcg2c (ENSKMAG00000008205) ENSKMAG00000008189 arpc1a (ENSKMAG00000008145) #21 arpc1b (ENSKMAG00000008109) #22 MMD2 (ENSKMAG00000008075) radil (ENSKMAG00000008034) foxk1 (ENSKMAG00000008011) cyp3a65 (ENSKMAG00000007943) ##34 ENSKMAG00000007892 SDK1 (ENSKMAG00000007669) GNA12 (ENSKMAG00000007598) ENSKMAG00000007574 ENSKMAG00000007537 ENSKMAG00000007510 EIF3B (ENSKMAG00000007432) brat1 (ENSKMAG00000007384) grapb (ENSKMAG00000007362) ENSKMAG00000007343 Turquoise killifish MODERN SPECIES 1611 Nfu_g_1_007023 (ENSNFUG00015006335) ENSNFUG00015006338 FBXL18 (ENSNFUG00015006340) PTCD1 (ENSNFUG00015006350) SMCR8B (ENSNFUG00015006353) ENSNFUG00015006362 mief2 (ENSNFUG00015006370) ALKBH5 (ENSNFUG00015006374) CR847950.4 (ENSNFUG00015006458) ENSNFUG00015006504 ENSNFUG00015006623 C1H16ORF72 (ENSNFUG00015006624) ENSNFUG00015006675 ENSNFUG00015007189 ENSNFUG00015007196 arpc1a (ENSNFUG00015007204) #21 arpc1b (ENSNFUG00015007224) #22 MMD2 (ENSNFUG00015007256) ENSNFUG00015007262 RADIL (ENSNFUG00015007274) foxk1 (ENSNFUG00015007286) cyp3a65 (ENSNFUG00015007369) ##34 ENSNFUG00015008493 ENSNFUG00015008500 SDK1 (ENSNFUG00015008616) ENSNFUG00015011270 mtg1 (ENSNFUG00015011277) GNA12A (ENSNFUG00015011291) ENSNFUG00015011476 CHST12 (ENSNFUG00015013751) ENSNFUG00015013753 Cyprinodontoidei ANCESTRAL SPECIES 24 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Poeciliinae ANCESTRAL SPECIES 27 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.g.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000155905.a.e ENSGT00490000043413 ENSGT00530000063614.a.b ENSGT00940000165626.f Poecilia ANCESTRAL SPECIES 31 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.g.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 NAME_6 ANCESTRAL SPECIES 323 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.g.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 Amazon molly MODERN SPECIES 652 ENSPFOG00000006473 ENSPFOG00000006668 hapstr1b (ENSPFOG00000007132) abcg2c (ENSPFOG00000007185) ENSPFOG00000023935 arpc1a (ENSPFOG00000023219) #21 arpc1b (ENSPFOG00000007351) #22 MMD2 (ENSPFOG00000007577) radil (ENSPFOG00000007614) foxk1 (ENSPFOG00000007970) cyp3a65 (ENSPFOG00000008049) ##34 ENSPFOG00000008593 ##34 ENSPFOG00000009128 ENSPFOG00000009153 Sailfin molly MODERN SPECIES 869 ENSPLAG00000004020 ENSPLAG00000004024 ENSPLAG00000004030 ENSPLAG00000004055 ENSPLAG00000004097 porcnl (ENSPLAG00000004137) suv39h1b (ENSPLAG00000004147) ENSPLAG00000004294 PAX7 (ENSPLAG00000006434) arpc1a (ENSPLAG00000006605) #21 arpc1b (ENSPLAG00000006677) #22 ENSPLAG00000006692 Guppy MODERN SPECIES 439 VAV1 (ENSPREG00000000065) UBL5 (ENSPREG00000000064) pin1 (ENSPREG00000000063) ENSPREG00000000062 ENSPREG00000000061 fbxl18 (ENSPREG00000000060) PTCD1 (ENSPREG00000000059) ENSPREG00000000058 ENSPREG00000000057 mief2 (ENSPREG00000000056) alkbh5 (ENSPREG00000000055) ENSPREG00000000054 ENSPREG00000000053 hapstr1b (ENSPREG00000000052) abcg2c (ENSPREG00000000051) arpc1a (ENSPREG00000000050) #21 arpc1b (ENSPREG00000000049) #22 MMD2 (ENSPREG00000000048) radil (ENSPREG00000000047) foxk1 (ENSPREG00000000046) ENSPREG00000000045 ##34 cyp3a65 (ENSPREG00000000044) ##34 ENSPREG00000000043 ENSPREG00000000042 SDK1 (ENSPREG00000000041) ENSPREG00000000040 ENSPREG00000000039 Platyfish MODERN SPECIES 19 UBL5 (ENSXMAG00000027727) pin1 (ENSXMAG00000015557) ENSXMAG00000024310 ENSXMAG00000015551 fbxl18 (ENSXMAG00000015544) PTCD1 (ENSXMAG00000015540) ENSXMAG00000015530 ENSXMAG00000022863 mief2 (ENSXMAG00000015519) alkbh5 (ENSXMAG00000015514) MYO15A (ENSXMAG00000015490) ENSXMAG00000000907 hapstr1b (ENSXMAG00000003416) abcg2b (ENSXMAG00000003423) ENSXMAG00000021146 arpc1a (ENSXMAG00000003448) #21 arpc1b (ENSXMAG00000003471) #22 MMD2 (ENSXMAG00000003490) radil (ENSXMAG00000003492) foxk1 (ENSXMAG00000003510) cyp3a65 (ENSXMAG00000025140) ##34 cyp3a65 (ENSXMAG00000009951) ##34 cyp3a65 (ENSXMAG00000027420) ##34 ENSXMAG00000026046 ENSXMAG00000029365 SDK1 (ENSXMAG00000006320) ENSXMAG00000027748 ENSXMAG00000022435 ENSXMAG00000022431 ENSXMAG00000028904 ENSXMAG00000021475 NAME_4 ANCESTRAL SPECIES 176 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 Mummichog MODERN SPECIES 2496 ENSFHEG00000012447 ENSFHEG00000012458 ENSFHEG00000012469 fbxl18 (ENSFHEG00000012475) PTCD1 (ENSFHEG00000012491) ENSFHEG00000012501 ENSFHEG00000012508 mief2 (ENSFHEG00000012519) ENSFHEG00000012525 ENSFHEG00000012696 ENSFHEG00000012781 hapstr1b (ENSFHEG00000012815) abcg2c (ENSFHEG00000012869) ENSFHEG00000012881 ENSFHEG00000012893 arpc1a (ENSFHEG00000000760) #21 arpc1b (ENSFHEG00000000290) #22 MMD2 (ENSFHEG00000012996) radil (ENSFHEG00000013005) foxk1 (ENSFHEG00000013019) cyp3a65 (ENSFHEG00000013157) ##34 cyp3a65 (ENSFHEG00000013261) ##34 ENSFHEG00000013343 Sheepshead minnow DUPLICATION Sheepshead minnow MODERN SPECIES 574 PTCD1 (ENSCVAG00000003621) ENSCVAG00000022786 mief2 (ENSCVAG00000022780) alkbh5 (ENSCVAG00000022772) ENSCVAG00000022756 ENSCVAG00000022721 hapstr1b (ENSCVAG00000022682) abcg2b (ENSCVAG00000022660) ENSCVAG00000022634 arpc1a (ENSCVAG00000022624) #21 arpc1b (ENSCVAG00000022598) #22 MMD2 (ENSCVAG00000022574) radil (ENSCVAG00000022529) foxk1 (ENSCVAG00000022503) ENSCVAG00000022497 #34 Sheepshead minnow MODERN SPECIES 505 ctcf (ENSCVAG00000003265) ENSCVAG00000003278 ENSCVAG00000003290 arpc1a (ENSCVAG00000003359) #21 ENSCVAG00000003413 ANO1 (ENSCVAG00000003438) PTPRZ1 (ENSCVAG00000003484) aass (ENSCVAG00000003499) fezf1 (ENSCVAG00000003505) CADPS2 (ENSCVAG00000003547) slc13a1 (ENSCVAG00000003568) IQUB (ENSCVAG00000003616) Oryzias ANCESTRAL SPECIES 15 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.f.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.f.a.a ##34 ENSGT00950000182958.b.a.a.a.a.a.f.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 Oryzias_b ANCESTRAL SPECIES 21 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.f.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.f.a.a ##34 ENSGT00950000182958.b.a.a.a.a.a.f.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 Indian medaka MODERN SPECIES 35 ENSOMEG00000020498 ENSOMEG00000020552 actb1 (ENSOMEG00000020586) fbxl18 (ENSOMEG00000020603) PTCD1 (ENSOMEG00000020627) ENSOMEG00000020666 ENSOMEG00000020754 mief2 (ENSOMEG00000020791) alkbh5 (ENSOMEG00000020820) MYO15A (ENSOMEG00000020933) ENSOMEG00000021095 hapstr1b (ENSOMEG00000021142) abcg2c (ENSOMEG00000021272) ENSOMEG00000000565 ENSOMEG00000021316 arpc1a (ENSOMEG00000021367) #21 arpc1b (ENSOMEG00000021429) #22 MMD2 (ENSOMEG00000021473) radil (ENSOMEG00000021581) foxk1 (ENSOMEG00000021635) cyp3a65 (ENSOMEG00000021683) ##34 cyp3a65 (ENSOMEG00000021770) ##34 cyp3a65 (ENSOMEG00000021856) ##34 ENSOMEG00000021903 SDK1 (ENSOMEG00000022171) GNA12 (ENSOMEG00000022227) ENSOMEG00000022267 ENSOMEG00000022285 grapb (ENSOMEG00000022301) FAM83G (ENSOMEG00000022330) SLC5A10 (ENSOMEG00000001807) Javanese ricefish MODERN SPECIES ENSOJAG00000014496 ENSOJAG00000014504 ACTG1 (ENSOJAG00000014512) fbxl18 (ENSOJAG00000014573) PTCD1 (ENSOJAG00000014663) ENSOJAG00000014711 ENSOJAG00000014734 mief2 (ENSOJAG00000014808) alkbh5 (ENSOJAG00000014815) ENSOJAG00000014819 ENSOJAG00000014874 hapstr1b (ENSOJAG00000015004) abcg2c (ENSOJAG00000015025) ENSOJAG00000015322 ENSOJAG00000015330 arpc1a (ENSOJAG00000015354) #21 arpc1b (ENSOJAG00000015421) #22 MMD2 (ENSOJAG00000015528) radil (ENSOJAG00000015543) foxk1 (ENSOJAG00000015565) cyp3a65 (ENSOJAG00000015599) ##34 cyp3a65 (ENSOJAG00000015684) ##34 ENSOJAG00000017369 ENSOJAG00000017380 ENSOJAG00000017453 ENSOJAG00000018982 GNA12 (ENSOJAG00000018994) ENSOJAG00000019118 ENSOJAG00000003622 EIF3B (ENSOJAG00000003642) ENSOJAG00000003714 Oryzias_a ANCESTRAL SPECIES 26 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.f.a.a ##34 ENSGT00950000182958.b.a.a.a.a.a.f.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Chinese medaka MODERN SPECIES 973 UBL5 (ENSOSIG00000016012) pin1 (ENSOSIG00000016011) ENSOSIG00000015974 actb1 (ENSOSIG00000015919) fbxl18 (ENSOSIG00000015916) PTCD1 (ENSOSIG00000015915) ENSOSIG00000015907 ENSOSIG00000015902 mief2 (ENSOSIG00000015901) alkbh5 (ENSOSIG00000015899) ENSOSIG00000015781 hapstr1b (ENSOSIG00000015764) abcg2c (ENSOSIG00000015227) ENSOSIG00000015222 ENSOSIG00000015221 arpc1a (ENSOSIG00000015220) #21 arpc1b (ENSOSIG00000015215) #22 ENSOSIG00000015214 Japanese Medaka HdrR MODERN SPECIES ENSORLG00000019573 ENSORLG00000022786 actb1 (ENSORLG00000009309) fbxl18 (ENSORLG00000009288) PTCD1 (ENSORLG00000009275) ENSORLG00000009263 ENSORLG00000009252 mief2 (ENSORLG00000009240) alkbh5 (ENSORLG00000009235) ENSORLG00000030000 ENSORLG00000009184 ENSORLG00000027721 hapstr1b (ENSORLG00000022770) abcg2c (ENSORLG00000009145) ENSORLG00000024225 arpc1a (ENSORLG00000009096) #21 arpc1b (ENSORLG00000009068) #22 MMD2 (ENSORLG00000025252) radil (ENSORLG00000009042) foxk1 (ENSORLG00000009023) cyp3a40 (ENSORLG00000019560) ##34 cyp3a (ENSORLG00000019618) ##34 ENSORLG00000009014 ENSORLG00000030128 ENSORLG00000008999 ENSORLG00000024037 GNA12 (ENSORLG00000008943) ern2 (ENSORLG00000008924) ENSORLG00000008873 EIF3B (ENSORLG00000008861) brat1 (ENSORLG00000008847) Ovalentaria_B ANCESTRAL SPECIES 4 ENSGT00530000063725.p.f.d ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Cichlidae ANCESTRAL SPECIES 3 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00990000204818.a ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00950000182960.a.a.b.e.b.a ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.l.b ##34 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 Lyretail cichlid DUPLICATION Lyretail cichlid MODERN SPECIES 332 ENSNBRG00000010199 fbxl18 (ENSNBRG00000010149) PTCD1 (ENSNBRG00000010079) ENSNBRG00000010048 ENSNBRG00000009990 smcr8b (ENSNBRG00000009980) mief2 (ENSNBRG00000009954) alkbh5 (ENSNBRG00000009936) ENSNBRG00000009919 ENSNBRG00000009910 ENSNBRG00000009863 hapstr1b (ENSNBRG00000009844) abcg2c (ENSNBRG00000009655) ENSNBRG00000009620 ENSNBRG00000009597 arpc1a (ENSNBRG00000009587) #21 arpc1a (ENSNBRG00000009566) #21 arpc1b (ENSNBRG00000009543) #22 MMD2 (ENSNBRG00000009524) radil (ENSNBRG00000009464) foxk1 (ENSNBRG00000009409) cyp3a65 (ENSNBRG00000009111) ##34 cyp3a65 (ENSNBRG00000009035) ##34 cyp3a65 (ENSNBRG00000008950) ##34 ENSNBRG00000008940 ENSNBRG00000008923 SDK1 (ENSNBRG00000008837) ENSNBRG00000008814 GNA12 (ENSNBRG00000008798) ENSNBRG00000008766 ENSNBRG00000008730 Lyretail cichlid MODERN SPECIES 332 fbxl18 (ENSNBRG00000010149) PTCD1 (ENSNBRG00000010079) ENSNBRG00000010048 ENSNBRG00000009990 smcr8b (ENSNBRG00000009980) mief2 (ENSNBRG00000009954) alkbh5 (ENSNBRG00000009936) ENSNBRG00000009919 ENSNBRG00000009910 ENSNBRG00000009863 hapstr1b (ENSNBRG00000009844) abcg2c (ENSNBRG00000009655) ENSNBRG00000009620 ENSNBRG00000009597 arpc1a (ENSNBRG00000009587) #21 arpc1a (ENSNBRG00000009566) #21 arpc1b (ENSNBRG00000009543) #22 MMD2 (ENSNBRG00000009524) radil (ENSNBRG00000009464) foxk1 (ENSNBRG00000009409) cyp3a65 (ENSNBRG00000009111) ##34 cyp3a65 (ENSNBRG00000009035) ##34 cyp3a65 (ENSNBRG00000008950) ##34 ENSNBRG00000008940 ENSNBRG00000008923 SDK1 (ENSNBRG00000008837) ENSNBRG00000008814 GNA12 (ENSNBRG00000008798) ENSNBRG00000008766 ENSNBRG00000008730 EIF3B (ENSNBRG00000008582) Haplochromini ANCESTRAL SPECIES 3 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.l.b ##34 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747.k ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 Burton s mouthbrooder MODERN SPECIES 374 ENSHBUG00000018220 ENSHBUG00000018238 actb1 (ENSHBUG00000018251) fbxl18 (ENSHBUG00000018265) PTCD1 (ENSHBUG00000018275) ENSHBUG00000018284 smcr8b (ENSHBUG00000018288) mief2 (ENSHBUG00000018314) alkbh5 (ENSHBUG00000018324) ENSHBUG00000018462 ENSHBUG00000018585 hapstr1b (ENSHBUG00000018610) abcg2c (ENSHBUG00000018618) ENSHBUG00000018633 arpc1a (ENSHBUG00000018663) #21 arpc1b (ENSHBUG00000018691) #22 ENSHBUG00000018723 radil (ENSHBUG00000018755) foxk1 (ENSHBUG00000018823) ENSHBUG00000018835 ##34 cyp3a65 (ENSHBUG00000018842) ##34 cyp3a65 (ENSHBUG00000018871) ##34 ENSHBUG00000018924 ENSHBUG00000018938 SDK1 (ENSHBUG00000019165) GNA12 (ENSHBUG00000019222) ENSHBUG00000019242 ENSHBUG00000019254 EIF3B (ENSHBUG00000019329) brat1 (ENSHBUG00000019342) Haplochromini_A ANCESTRAL SPECIES 2 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000165949 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747.k ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 P. nyererei MODERN SPECIES 560 ENSPNYG00000019906 ENSPNYG00000019919 ENSPNYG00000019942 fbxl18 (ENSPNYG00000019957) PTCD1 (ENSPNYG00000019993) ENSPNYG00000020019 smcr8b (ENSPNYG00000020109) mief2 (ENSPNYG00000020121) alkbh5 (ENSPNYG00000020156) MYO15A (ENSPNYG00000020186) ENSPNYG00000020316 ENSPNYG00000020364 hapstr1b (ENSPNYG00000020374) abcg2c (ENSPNYG00000020405) ENSPNYG00000020481 arpc1a (ENSPNYG00000020492) #21 arpc1b (ENSPNYG00000020528) #22 MMD2 (ENSPNYG00000020553) radil (ENSPNYG00000020576) foxk1 (ENSPNYG00000020622) ENSPNYG00000020626 ##34 ENSPNYG00000020642 cyp3a65 (ENSPNYG00000020658) ##34 cyp3a65 (ENSPNYG00000020813) ##34 GPANK1 (ENSPNYG00000021711) ENSPNYG00000021772 SDK1 (ENSPNYG00000021802) Haplochromini_B ANCESTRAL SPECIES 8 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a.k ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.l.a ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747.k ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 Zebra mbuna MODERN SPECIES 1109 ENSMZEG00005012824 ENSMZEG00005012791 ACTB (ENSMZEG00005012760) PTCD1 (ENSMZEG00005012722) zgc:112980 (ENSMZEG00005012703) smcr8b (ENSMZEG00005012693) mief2 (ENSMZEG00005012679) alkbh5 (ENSMZEG00005012673) MYO15A (ENSMZEG00005012550) ENSMZEG00005012502 ENSMZEG00005012457 hapstr1b (ENSMZEG00005012443) abcg2b (ENSMZEG00005012411) ENSMZEG00005012398 ENSMZEG00005012389 arpc1a (ENSMZEG00005012370) #21 arpc1b (ENSMZEG00005012346) #22 MMD2 (ENSMZEG00005012327) radil (ENSMZEG00005012266) foxk1 (ENSMZEG00005012247) cyp3a65 (ENSMZEG00005012231) ##34 cyp3a65 (ENSMZEG00005012216) ##34 cyp3a65 (ENSMZEG00005012181) ##34 GPANK1 (ENSMZEG00005012135) ENSMZEG00005012115 ENSMZEG00005012110 SDK1 (ENSMZEG00005011972) GNA12 (ENSMZEG00005011918) ENSMZEG00005011884 ENSMZEG00005011878 EIF3B (ENSMZEG00005011827) Eastern happy MODERN SPECIES 18 ENSACLG00000002849 fbxl18 (ENSACLG00000002840) PTCD1 (ENSACLG00000002824) zgc:112980 (ENSACLG00000002791) smcr8b (ENSACLG00000002784) mief2 (ENSACLG00000002732) alkbh5 (ENSACLG00000002713) ENSACLG00000002632 ENSACLG00000002598 ENSACLG00000002548 hapstr1b (ENSACLG00000002543) abcg2b (ENSACLG00000002540) ENSACLG00000002538 ENSACLG00000002517 ENSACLG00000002502 arpc1a (ENSACLG00000002471) #21 arpc1b (ENSACLG00000002439) #22 MMD2 (ENSACLG00000002411) radil (ENSACLG00000002353) foxk1 (ENSACLG00000002347) cyp3a65 (ENSACLG00000002304) ##34 cyp3a65 (ENSACLG00000002251) ##34 cyp3a65 (ENSACLG00000001386) ##34 GPANK1 (ENSACLG00000001320) ENSACLG00000001306 SDK1 (ENSACLG00000001109) ENSACLG00000001102 ENSACLG00000001057 ENSACLG00000001046 GNA12 (ENSACLG00000000981) ENSACLG00000000966 Nile tilapia MODERN SPECIES 18 ENSONIG00000025166 fbxl18 (ENSONIG00000003165) PTCD1 (ENSONIG00000003168) zgc:112980 (ENSONIG00000003172) ENSONIG00000032900 smcr8b (ENSONIG00000003176) mief2 (ENSONIG00000003179) alkbh5 (ENSONIG00000003181) MYO15A (ENSONIG00000003182) ENSONIG00000003190 ENSONIG00000030100 hapstr1b (ENSONIG00000003202) abcg2b (ENSONIG00000003204) ENSONIG00000039403 ENSONIG00000039837 arpc1a (ENSONIG00000003213) #21 arpc1b (ENSONIG00000003217) #22 MMD2 (ENSONIG00000008524) radil (ENSONIG00000003223) foxk1 (ENSONIG00000003229) cyp3a65 (ENSONIG00000037961) ##34 cyp3a65 (ENSONIG00000003249) ##34 cyp3a65 (ENSONIG00000035482) ##34 cyp3a65 (ENSONIG00000034059) ##34 cyp3a65 (ENSONIG00000003231) ##34 ENSONIG00000033408 ENSONIG00000037527 ENSONIG00000033448 SDK1 (ENSONIG00000003264) GNA12 (ENSONIG00000003273) ENSONIG00000003276 Midas cichlid MODERN SPECIES 1004 ENSACIG00000018253 ENSACIG00000017987 ENSACIG00000017957 ENSACIG00000017943 fbxl18 (ENSACIG00000017899) PTCD1 (ENSACIG00000017861) smcr8b (ENSACIG00000017849) mief2 (ENSACIG00000017838) alkbh5 (ENSACIG00000017828) ENSACIG00000017815 ENSACIG00000017793 hapstr1b (ENSACIG00000017778) abcg2b (ENSACIG00000017725) ENSACIG00000017716 ENSACIG00000017707 arpc1a (ENSACIG00000017686) #21 arpc1b (ENSACIG00000017664) #22 MMD2 (ENSACIG00000017651) radil (ENSACIG00000017618) foxk1 (ENSACIG00000017584) cyp3a65 (ENSACIG00000017550) ##34 cyp3a65 (ENSACIG00000016717) ##34 cyp3a65 (ENSACIG00000016506) ##34 cyp3a65 (ENSACIG00000015785) ##34 ENSACIG00000015738 ENSACIG00000015729 SDK1 (ENSACIG00000015628) ENSACIG00000015602 GNA12 (ENSACIG00000015585) ENSACIG00000015500 ENSACIG00000015443 Pomacentridae ANCESTRAL SPECIES 8 ENSGT00990000204057.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ENSGT00940000153974.A ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00950000182958.b.a.a.a.a.b ##34 ENSGT00390000003292 ENSGT00940000170908 ENSGT00940000157747 ENSGT00940000157636 ENSGT00940000165262 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000156254.o.a Bicolor damselfish MODERN SPECIES 1493 ENSSPAG00000018808 hapstr1b (ENSSPAG00000018857) abcg2c (ENSSPAG00000018875) ENSSPAG00000018904 ENSSPAG00000018907 arpc1a (ENSSPAG00000018921) #21 arpc1b (ENSSPAG00000018957) #22 MMD2 (ENSSPAG00000018978) Pomacentridae_A ANCESTRAL SPECIES 188 ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 Spiny chromis MODERN SPECIES 1691 arpc1a (ENSAPOG00000004186) #21 arpc1b (ENSAPOG00000004144) #22 MMD2 (ENSAPOG00000004091) radil (ENSAPOG00000004046) Amphiprion ANCESTRAL SPECIES 124 ENSGT00940000177082 ENSGT00950000183209.b.a.b ENSGT00940000155129.B ENSGT00940000157923 ENSGT00940000153974.A ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d.d ENSGT00940000159293 ENSGT00940000159507 ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT01030000235934 Clown anemonefish MODERN SPECIES 698 ENSAOCG00000015669 arpc1a (ENSAOCG00000001081) #21 arpc1b (ENSAOCG00000015609) #22 MMD2 (ENSAOCG00000015562) radil (ENSAOCG00000015534) foxk1 (ENSAOCG00000015426) cyp3a65 (ENSAOCG00000015406) ##34 ENSAOCG00000015383 Orange clownfish DUPLICATION Orange clownfish MODERN SPECIES 17 slc8a1a (ENSAPEG00000022587) psen2 (ENSAPEG00000022613) PTCD1 (ENSAPEG00000022632) ENSAPEG00000022651 smcr8b (ENSAPEG00000022674) mief2 (ENSAPEG00000022682) alkbh5 (ENSAPEG00000022697) ENSAPEG00000022728 ENSAPEG00000022754 ENSAPEG00000022789 hapstr1b (ENSAPEG00000022794) abcg2c (ENSAPEG00000022805) ENSAPEG00000022817 ENSAPEG00000022820 arpc1a (ENSAPEG00000022827) #21 arpc1a (ENSAPEG00000022863) #21 ENSAPEG00000022903 ENSAPEG00000022910 arpc1b (ENSAPEG00000022928) #22 MMD2 (ENSAPEG00000022945) radil (ENSAPEG00000022987) foxk1 (ENSAPEG00000023048) cyp3a65 (ENSAPEG00000023095) ##34 ENSAPEG00000023107 clrn2 (ENSAPEG00000023115) tapt1b (ENSAPEG00000023121) prom1b (ENSAPEG00000023178) fgfbp2b (ENSAPEG00000023360) FGFBP1 (ENSAPEG00000023365) ENSAPEG00000023370 anxa5b (ENSAPEG00000023383) Orange clownfish MODERN SPECIES 17 ENSAPEG00000022581 slc8a1a (ENSAPEG00000022587) psen2 (ENSAPEG00000022613) PTCD1 (ENSAPEG00000022632) ENSAPEG00000022651 smcr8b (ENSAPEG00000022674) mief2 (ENSAPEG00000022682) alkbh5 (ENSAPEG00000022697) ENSAPEG00000022728 ENSAPEG00000022754 ENSAPEG00000022789 hapstr1b (ENSAPEG00000022794) abcg2c (ENSAPEG00000022805) ENSAPEG00000022817 ENSAPEG00000022820 arpc1a (ENSAPEG00000022827) #21 arpc1a (ENSAPEG00000022863) #21 ENSAPEG00000022903 ENSAPEG00000022910 arpc1b (ENSAPEG00000022928) #22 MMD2 (ENSAPEG00000022945) radil (ENSAPEG00000022987) foxk1 (ENSAPEG00000023048) cyp3a65 (ENSAPEG00000023095) ##34 ENSAPEG00000023107 clrn2 (ENSAPEG00000023115) tapt1b (ENSAPEG00000023121) prom1b (ENSAPEG00000023178) fgfbp2b (ENSAPEG00000023360) FGFBP1 (ENSAPEG00000023365) ENSAPEG00000023370 Tiger tail seahorse MODERN SPECIES 518 ENSHCOG00000012204 mad1l1 (ENSHCOG00000011565) ELFN1 (ENSHCOG00000011553) VAV1 (ENSHCOG00000011487) UBL5 (ENSHCOG00000011460) pin1 (ENSHCOG00000011456) ENSHCOG00000011437 ENSHCOG00000011430 ENSHCOG00000011400 PLK1 (ENSHCOG00000011376) ENSHCOG00000011339 ttyh3b (ENSHCOG00000011321) ENSHCOG00000011268 ENSHCOG00000011040 arpc1a (ENSHCOG00000011030) #21 arpc1b (ENSHCOG00000010998) #22 ENSHCOG00000010966 ENSHCOG00000010858 ENSHCOG00000010830 alkbh5 (ENSHCOG00000010816) smcr8b (ENSHCOG00000010805) zgc:112980 (ENSHCOG00000010797) PTCD1 (ENSHCOG00000010784) fbxl18 (ENSHCOG00000010769) rdh8b (ENSHCOG00000010658) ENSHCOG00000010604 ENSHCOG00000010527 olfm2b (ENSHCOG00000010512) TRIP10 (ENSHCOG00000010451) ENSHCOG00000010436 Protacanthopterygii ANCESTRAL SPECIES 117 ENSGT00390000009759.d ENSGT00940000159613 ENSGT00940000159788.a.b ENSGT00390000013443.c.j ENSGT00940000159005.c.b ENSGT01050000244893.c.a.a.b ENSGT00940000155217.o.b.c.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a ##34 ENSGT00940000156614.a ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000157636 ENSGT00940000157747.c.b ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00950000182803.A.a.a.c.b ENSGT00550000075029 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 1806 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 Huchen DUPLICATION Huchen DUPLICATION Huchen MODERN SPECIES 8801 arpc1a (ENSHHUG00000013920) #21 Huchen MODERN SPECIES 12606 arpc1a (ENSHHUG00000016875) #21 Huchen MODERN SPECIES 11970 ENSHHUG00000012435 #21 Salmoninae_a ANCESTRAL SPECIES 190 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 ENSGT00940000177139.h.a ENSGT00950000183183.b.a.j.b #21 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.a ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.b.a.b.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b ##34 ENSGT00390000003292.j.a Oncorhynchus ANCESTRAL SPECIES ENSGT00950000183183.b.a.i #21 Rainbow trout MODERN SPECIES 8 ENSOMYG00000052139 ENSOMYG00000015218 ENSOMYG00000001350 ENSOMYG00000015156 ENSOMYG00000060317 ENSOMYG00000067845 ENSOMYG00000059978 ENSOMYG00000066370 socs1b (ENSOMYG00000011116) ENSOMYG00000050059 ENSOMYG00000011127 ENSOMYG00000052426 hapstr1b (ENSOMYG00000008968) ENSOMYG00000066223 ENSOMYG00000058537 ENSOMYG00000029967 #21 ENSOMYG00000069283 ENSOMYG00000075468 cyp3a27 (ENSOMYG00000061833) ##34 ENSOMYG00000074192 ENSOMYG00000012908 ENSOMYG00000027776 ##34 ENSOMYG00000077538 ENSOMYG00000027945 ##34 ENSOMYG00000076167 ENSOMYG00000075646 ##34 ENSOMYG00000059212 ENSOMYG00000062540 ENSOMYG00000005466 ENSOMYG00000049782 ENSOMYG00000054638 Salmo ANCESTRAL SPECIES 166 ENSGT00940000155217.o.b.c.b.b.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a.h ENSGT00940000162658.b ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 ENSGT00940000165949 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 ENSGT00950000183183.b.b.i.a.a #22 ENSGT00940000157972.d.a.b ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b.b ##34 ENSGT00390000003292.j.a River trout MODERN SPECIES 215 ENSSTUG00000036312 ENSSTUG00000036318 arpc1a (ENSSTUG00000036329) #21 arpc1b (ENSSTUG00000036394) #22 ENSSTUG00000036434 MMD2 (ENSSTUG00000036436) ENSSTUG00000036440 MMD2 (ENSSTUG00000036442) arpc1b (ENSSTUG00000036451) #22 ENSSTUG00000036539 arpc1a (ENSSTUG00000036547) #21 ENSSTUG00000036554 Salmoninae ANCESTRAL SPECIES 568 ENSGT01050000244893.c.a.a.b ENSGT00940000155217.o.b.c.b.b.a ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j #21 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.a ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.b.a.b.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b ##34 ENSGT00390000003292 Salmoninae_a DUPLICATION Salmoninae_a ANCESTRAL SPECIES 194 ENSGT01050000244893.c.a.a.b ENSGT00940000155217.o.b.c.b.b.a ENSGT00940000155217.o.b.c.b.b.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 Salmo ANCESTRAL SPECIES 166 ENSGT00940000155217.o.b.c.b.b.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a.h ENSGT00940000162658.b ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 ENSGT00940000165949 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 ENSGT00950000183183.b.b.i.a.a #22 ENSGT00940000157972.d.a.b ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.a.a.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b.b ##34 ENSGT00390000003292.j.a Atlantic salmon MODERN SPECIES 11 ENSSSAG00000000191 ENSSSAG00000049489 ENSSSAG00000114940 ENSSSAG00000110892 ENSSSAG00000120989 ENSSSAG00000107253 ENSSSAG00000095195 ENSSSAG00000000248 ENSSSAG00000094876 ENSSSAG00000118171 ENSSSAG00000103846 ENSSSAG00000100382 hapstr1b (ENSSSAG00000000903) ENSSSAG00000102684 abcg2b (ENSSSAG00000000889) ENSSSAG00000007849 #21 ENSSSAG00000100569 ENSSSAG00000100526 arc1b (ENSSSAG00000089766) #22 MMD2 (ENSSSAG00000110000) RADIL (ENSSSAG00000092488) FOXK1 (ENSSSAG00000118397) ENSSSAG00000003450 ##34 ENSSSAG00000009258 ##34 ENSSSAG00000087972 ##34 ENSSSAG00000015381 ##34 ENSSSAG00000083136 ENSSSAG00000003478 ENSSSAG00000000629 ENSSSAG00000116311 ENSSSAG00000089701 River trout MODERN SPECIES 215 ENSSTUG00000036554 arpc1a (ENSSTUG00000036547) #21 ENSSTUG00000036539 arpc1b (ENSSTUG00000036451) #22 MMD2 (ENSSTUG00000036442) ENSSTUG00000036440 MMD2 (ENSSTUG00000036436) ENSSTUG00000036434 arpc1b (ENSSTUG00000036394) #22 arpc1a (ENSSTUG00000036329) #21 ENSSTUG00000036318 ENSSTUG00000036312 Oncorhynchus ANCESTRAL SPECIES 137 ENSGT01050000244893.c.a.a.b ENSGT01020000231775 ENSGT00940000155217.o.b.c.b.b.b ENSGT00940000167193 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 ENSGT00950000183183.b.b.i.b #22 ENSGT00940000157972.d.a ENSGT00940000159507.f Oncorhynchus_a ANCESTRAL SPECIES 278 ENSGT00390000004428.b ENSGT00950000182894.A.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139.h.b ENSGT00950000183183.b.a.j.a #21 Coho salmon MODERN SPECIES 1374 ENSOKIG00005048943 arpc1a (ENSOKIG00005048939) #21 ENSOKIG00005048936 arpc1b (ENSOKIG00005048917) #22 ENSOKIG00005048907 ENSOKIG00005048905 ENSOKIG00005048898 FOXK1 (ENSOKIG00005048892) ENSOKIG00005048883 ##34 ENSOKIG00005048880 Rainbow trout MODERN SPECIES 69 ENSOMYG00000049939 ENSOMYG00000050782 ENSOMYG00000055363 ENSOMYG00000074454 ENSOMYG00000068401 ENSOMYG00000072648 #21 ENSOMYG00000064749 ENSOMYG00000058454 ENSOMYG00000073236 ENSOMYG00000071443 ENSOMYG00000060048 ##34 ENSOMYG00000052128 ENSOMYG00000075259 ##34 ENSOMYG00000050788 ENSOMYG00000038707 Salmoninae_a ANCESTRAL SPECIES 190 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a.i #21 ENSGT00940000177139.h.a ENSGT00950000183183.b.a.j.b #21 ENSGT00950000183183.b.b.i.a #22 ENSGT00940000157972.d.a ENSGT00940000159293.k ENSGT00940000159507.e ENSGT00950000182958.b.a.a.a.a.a.c.a.b.a.b.b ##34 ENSGT00950000182958.b.a.a.a.a.a.c.a.b.b ##34 ENSGT00390000003292.j.a Salmo ANCESTRAL SPECIES 314 ENSGT00390000002886.a.a.a.g ENSGT00940000177139.h.a ENSGT00950000183183.b.a.j.b #21 ENSGT00950000183183.b.b.i.a.b #22 ENSGT00940000157972.d.a.a Atlantic salmon MODERN SPECIES 3 ENSSSAG00000082143 ENSSSAG00000106342 ENSSSAG00000115193 ENSSSAG00000119092 ENSSSAG00000117076 ENSSSAG00000117395 ENSSSAG00000085436 ENSSSAG00000103844 ENSSSAG00000058606 ENSSSAG00000007871 ENSSSAG00000007880 GRIN2A (ENSSSAG00000090079) ENSSSAG00000120850 hapstr1b (ENSSSAG00000059059) ENSSSAG00000114823 ENSSSAG00000000860 #21 ENSSSAG00000120103 ENSSSAG00000007843 #22 MMD2 (ENSSSAG00000087712) RADIL (ENSSSAG00000102000) FOXK1 (ENSSSAG00000098143) ENSSSAG00000003554 ##34 ENSSSAG00000003527 ##34 ENSSSAG00000098549 ENSSSAG00000007829 ENSSSAG00000001064 ENSSSAG00000110930 ENSSSAG00000000495 ENSSSAG00000008996 ENSSSAG00000083111 ENSSSAG00000116065 Otomorpha ANCESTRAL SPECIES 12 ENSGT00940000156643 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 Otophysi ANCESTRAL SPECIES 34 ENSGT00940000156643 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 Characiphysae ANCESTRAL SPECIES 10 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00550000074913.i ENSGT00940000156614.b.j ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Channel catfish MODERN SPECIES 16 smcr8 (ENSIPUG00000017027) shmt1 (ENSIPUG00000017041) pdap1 (ENSIPUG00000017111) #23 bud31 (ENSIPUG00000017126) #24 cpsf4 (ENSIPUG00000017147) #26 atp5mf (ENSIPUG00000017219) slc29a4 (ENSIPUG00000017239) tnrc18 (ENSIPUG00000017314) twf1b (ENSIPUG00000017458) actb (ENSIPUG00000017486) fscn1 (ENSIPUG00000017523) ENSIPUG00000017537 ENSIPUG00000017573 smurf1 (ENSIPUG00000017588) #19 ENSIPUG00000017631 arpc1a (ENSIPUG00000017706) #21 ARPC1B (ENSIPUG00000017735) #22 WIPI2 (ENSIPUG00000017786) mmd2 (ENSIPUG00000017843) ap5z1 (ENSIPUG00000017877) foxk1 (ENSIPUG00000017911) cyp3a40 (ENSIPUG00000017942) ##34 SDK1 (ENSIPUG00000017988) card11 (ENSIPUG00000018235) gna12 (ENSIPUG00000018333) eif3b (ENSIPUG00000018347) chst12 (ENSIPUG00000018365) ENSIPUG00000018370 grifin (ENSIPUG00000018379) lfng (ENSIPUG00000018394) ttyh3 (ENSIPUG00000018410) Characiphysae_b ANCESTRAL SPECIES 1 ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00940000166074.B ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00550000074913.i ENSGT00940000156614.b.j ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Characoidei ANCESTRAL SPECIES 3 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00550000074913.i ENSGT00940000156614.b.j ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 ENSGT00950000183060.a.a.d.b Mexicana tetra MODERN SPECIES 15 slc29a4a (ENSAMXG00000010125) TNRC18 (ENSAMXG00000010115) actb2 (ENSAMXG00000037226) fscn1a (ENSAMXG00000031207) RNF216 (ENSAMXG00000010094) ENSAMXG00000025542 ENSAMXG00000042959 psmg3 (ENSAMXG00000030051) tmem184a (ENSAMXG00000039767) mafk (ENSAMXG00000001047) INTS1 (ENSAMXG00000001060) ENSAMXG00000030924 micall2a (ENSAMXG00000003783) smurf1 (ENSAMXG00000010087) #19 ENSAMXG00000010027 arpc1a (ENSAMXG00000009997) #21 arpc1b (ENSAMXG00000009992) #22 wipi2 (ENSAMXG00000009985) mmd2a (ENSAMXG00000030134) ap5z1 (ENSAMXG00000009967) foxk1 (ENSAMXG00000009961) ENSAMXG00000034235 ##34 ENSAMXG00000043827 ##34 ENSAMXG00000009950 ##34 SDK1 (ENSAMXG00000009867) CARD11 (ENSAMXG00000009824) gna12a (ENSAMXG00000035311) eif3ba (ENSAMXG00000009773) chst12a (ENSAMXG00000025540) ENSAMXG00000025538 grifin (ENSAMXG00000037837) Red-bellied piranha MODERN SPECIES 89 TOP3A (ENSPNAG00000022998) smcr8a (ENSPNAG00000022908) shmt1 (ENSPNAG00000022895) pdap1b (ENSPNAG00000022846) #23 bud31 (ENSPNAG00000022817) #24 cpsf4 (ENSPNAG00000003736) #26 atp5mf (ENSPNAG00000022775) slc29a4a (ENSPNAG00000022751) TNRC18 (ENSPNAG00000022709) actb2 (ENSPNAG00000022673) fscn1a (ENSPNAG00000022662) RNF216 (ENSPNAG00000022632) ENSPNAG00000003722 smurf1 (ENSPNAG00000022618) #19 ENSPNAG00000022571 arpc1a (ENSPNAG00000022456) #21 arpc1b (ENSPNAG00000022408) #22 wipi2 (ENSPNAG00000022384) mmd2a (ENSPNAG00000022319) ap5z1 (ENSPNAG00000022269) foxk1 (ENSPNAG00000022234) cyp3c4 (ENSPNAG00000022214) ##34 SDK1 (ENSPNAG00000022156) CARD11 (ENSPNAG00000021827) gna12a (ENSPNAG00000021705) eif3ba (ENSPNAG00000021677) chst12a (ENSPNAG00000021656) ENSPNAG00000021649 grifin (ENSPNAG00000021643) lfng (ENSPNAG00000021632) TTYH3 (ENSPNAG00000021579) Electric eel MODERN SPECIES slc29a4a (ENSEEEG00000000002) TNRC18 (ENSEEEG00000000003) actb2 (ENSEEEG00000000004) fscn1a (ENSEEEG00000000005) RNF216 (ENSEEEG00000000006) smurf1 (ENSEEEG00000000008) #19 ENSEEEG00000000009 arpc1a (ENSEEEG00000000010) #21 arpc1b (ENSEEEG00000000011) #22 wipi2 (ENSEEEG00000000012) mmd2a (ENSEEEG00000000013) ap5z1 (ENSEEEG00000000014) foxk1 (ENSEEEG00000000015) cyp3c4 (ENSEEEG00000000016) ##34 SDK1 (ENSEEEG00000000017) CARD11 (ENSEEEG00000000018) gna12a (ENSEEEG00000000019) eif3ba (ENSEEEG00000000020) chst12a (ENSEEEG00000000021) ENSEEEG00000000022 ENSEEEG00000000023 lfng (ENSEEEG00000000024) TTYH3 (ENSEEEG00000000025) Cyprinoidei ANCESTRAL SPECIES 56 ENSGT00940000156701 ENSGT00390000010052.a ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690.f #19 ENSGT01030000234534.C ENSGT00940000158690.e #19 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b.c.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 545 ENSGT00950000183157.a.a.b.o.a ENSGT00510000048032.l ENSGT00940000158690.e.b #19 ENSGT00950000183183.b.a.k #21 ENSGT00950000183183.b.b.d #22 ENSGT00940000155537.h ENSGT00940000157972.c.a ENSGT00390000017592.j ENSGT00940000159507.c ENSGT00940000157747.y.a ENSGT00940000158573.k ENSGT00940000157636.c.c ENSGT00550000074913.i.d ENSGT00940000156614.b.h ENSGT01070000253744.a.a.a.b.a.a.g.a ENSGT00940000162164.e ENSGT00940000158717.k ENSGT00950000183060.a.a.d.b.a.a ENSGT00460000041594.q.a Goldfish DUPLICATION Goldfish MODERN SPECIES 22 nprl3 (ENSCARG00000059359) ENSCARG00000059882 rhbdf1a (ENSCARG00000059962) aanat2 (ENSCARG00000060374) mgrn1b (ENSCARG00000060462) ubald1b (ENSCARG00000063111) ENSCARG00000063123 ENSCARG00000063169 s1pr2 (ENSCARG00000063247) dnmt1 (ENSCARG00000063315) eif3g (ENSCARG00000063726) p2ry11 (ENSCARG00000063869) ENSCARG00000063880 trip10a (ENSCARG00000063979) olfm2a (ENSCARG00000065566) arpc1a (ENSCARG00000065573) #21 arpc1b (ENSCARG00000065587) #22 wipi2 (ENSCARG00000065603) mmd2a (ENSCARG00000065728) ap5z1 (ENSCARG00000065773) SDK1 (ENSCARG00000065885) ENSCARG00000066191 ENSCARG00000066207 smurf1 (ENSCARG00000066359) #19 ABCC1 (ENSCARG00000067444) gna13b (ENSCARG00000069986) slc16a6b (ENSCARG00000069987) wipi1 (ENSCARG00000069989) zgc:86896 (ENSCARG00000069994) ##22 prkar1aa (ENSCARG00000069996) gps1 (ENSCARG00000070000) Goldfish MODERN SPECIES 22 myl4 (ENSCARG00000002235) scn4ab (ENSCARG00000002323) gh1 (ENSCARG00000002508) ENSCARG00000002560 ENSCARG00000002586 ENSCARG00000002589 ifnphi1 (ENSCARG00000002602) ifnphi1 (ENSCARG00000002638) ENSCARG00000002670 coa3b (ENSCARG00000002701) ENSCARG00000002713 ENSCARG00000002723 ENSCARG00000002732 ramp2 (ENSCARG00000002737) ENSCARG00000002744 arpc1a (ENSCARG00000002758) #21 arpc1b (ENSCARG00000002772) #22 wipi2 (ENSCARG00000002826) mmd2a (ENSCARG00000002971) ap5z1 (ENSCARG00000003003) ENSCARG00000003068 CREBBP (ENSCARG00000003136) ENSCARG00000003347 MCOLN1 (ENSCARG00000003394) ENSCARG00000003792 ubn2b (ENSCARG00000003829) trir (ENSCARG00000003920) ENSCARG00000003933 ENSCARG00000003950 EMP1 (ENSCARG00000003960) ENSCARG00000003979 Cyprininae_a ANCESTRAL SPECIES 307 ENSGT00390000014178.b ENSGT00940000156643.b ENSGT00940000156701.b ENSGT00390000010052.a.b ENSGT00390000002762.a.b.n ENSGT00390000018509.a.q #23 ENSGT00390000014300.n #24 ENSGT00940000155520.vb #26 ENSGT00940000165557.h ENSGT00950000182898.a.b.o.a ENSGT00940000157099.s ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b.o.a ENSGT00510000048032.l ENSGT00940000158690.e.b #19 ENSGT00950000183183.b.a.k #21 ENSGT00950000183183.b.b.d #22 ENSGT00940000155537.h ENSGT00940000157972.c.a ENSGT00390000017592.j ENSGT00940000159507.c ENSGT00950000182958.b.a.b.c.a ##34 ENSGT00940000157747.y.a ENSGT00940000158573.k ENSGT00940000157636.c.c ENSGT00550000074913.i.d ENSGT00940000156614.b.h ENSGT01070000253744.a.a.a.b.a.a.g.a ENSGT00940000162164.e ENSGT00940000158717.k ENSGT00950000183060.a.a.d.b.a.a Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 8 syngr3a (ENSSGRG00000046157) znf598 (ENSSGRG00000046158) flii (ENSSGRG00000046171) smcr8a (ENSSGRG00000046490) shmt1 (ENSSGRG00000046492) pdap1b (ENSSGRG00000046617) #23 bud31 (ENSSGRG00000046618) #24 cpsf4 (ENSSGRG00000046623) #26 atp5mf (ENSSGRG00000046674) ENSSGRG00000046677 actb2 (ENSSGRG00000000280) fscn1a (ENSSGRG00000000599) ENSSGRG00000000601 ENSSGRG00000000609 smurf1 (ENSSGRG00000000663) #19 arpc1a (ENSSGRG00000002198) #21 arpc1b (ENSSGRG00000002202) #22 wipi2 (ENSSGRG00000002238) mmd2a (ENSSGRG00000002379) ap5z1 (ENSSGRG00000002381) foxk1 (ENSSGRG00000002384) cyp3c4 (ENSSGRG00000002398) ##34 ENSSGRG00000004847 ##34 SDK1 (ENSSGRG00000004909) CARD11 (ENSSGRG00000006508) gna12a (ENSSGRG00000006509) eif3ba (ENSSGRG00000006510) chst12a (ENSSGRG00000006636) ENSSGRG00000006637 grifin (ENSSGRG00000006644) lfng (ENSSGRG00000006645) Golden-line barbel MODERN SPECIES 36 drg2 (ENSSGRG00000025197) gfer (ENSSGRG00000025189) syngr3a (ENSSGRG00000025188) znf598 (ENSSGRG00000025187) flii (ENSSGRG00000024630) TOP3A (ENSSGRG00000024311) smcr8a (ENSSGRG00000024304) shmt1 (ENSSGRG00000024138) bud31 (ENSSGRG00000024126) #24 slc29a4a (ENSSGRG00000024125) TNRC18 (ENSSGRG00000024124) ENSSGRG00000024123 fscn1a (ENSSGRG00000024122) ENSSGRG00000024121 smurf1 (ENSSGRG00000023320) #19 arpc1a (ENSSGRG00000023238) #21 arpc1b (ENSSGRG00000023237) #22 arpc1b (ENSSGRG00000023235) #22 wipi2 (ENSSGRG00000022548) mmd2a (ENSSGRG00000022508) ap5z1 (ENSSGRG00000022504) foxk1 (ENSSGRG00000022494) cyp3c4 (ENSSGRG00000022236) ##34 SDK1 (ENSSGRG00000022161) CARD11 (ENSSGRG00000021748) gna12a (ENSSGRG00000021746) eif3ba (ENSSGRG00000021723) chst12a (ENSSGRG00000021722) ENSSGRG00000021721 grifin (ENSSGRG00000021719) lfng (ENSSGRG00000021661) Common carp reference MODERN SPECIES 3 flii (ENSCCRG00000065292) smcr8a (ENSCCRG00000012627) TOP3A (ENSCCRG00000012638) shmt1 (ENSCCRG00000012623) pdap1b (ENSCCRG00000068497) #23 bud31 (ENSCCRG00000073893) #24 cpsf4 (ENSCCRG00000012607) #26 atp5mf (ENSCCRG00000012602) slc29a4a (ENSCCRG00000029725) actb2 (ENSCCRG00000007233) ENSCCRG00000005914 fscn1a (ENSCCRG00000055127) RNF216 (ENSCCRG00000001719) smurf1 (ENSCCRG00000007960) #19 ENSCCRG00000015987 arpc1a (ENSCCRG00000007863) #21 arpc1b (ENSCCRG00000007822) #22 wipi2 (ENSCCRG00000007681) mmd2a (ENSCCRG00000007649) ap5z1 (ENSCCRG00000006288) foxk1 (ENSCCRG00000006272) ENSCCRG00000055534 ##34 SDK1 (ENSCCRG00000063944) CARD11 (ENSCCRG00000079965) eif3ba (ENSCCRG00000025354) chst12a (ENSCCRG00000060908) ENSCCRG00000077751 grifin (ENSCCRG00000025337) lfng (ENSCCRG00000038505) ENSCCRG00000075545 snx8a (ENSCCRG00000017625) Cyprininae ANCESTRAL SPECIES 182 ENSGT00390000014178.a ENSGT00940000156643.a ENSGT00940000156701.a ENSGT00390000010052.a.a ENSGT00390000002762.a.b.m ENSGT00390000018509.a.r #23 ENSGT00390000014300.m #24 ENSGT00940000155520.wb #26 ENSGT00940000165557.i ENSGT00950000182898.a.b.o.b ENSGT00940000157099.t ENSGT00950000182960.a.a.b.d.a.b ENSGT00950000183157.a.a.b.o.b.a ENSGT00510000048032.k ENSGT00940000158690.e.a #19 ENSGT00950000183183.b.a.l #21 ENSGT00950000183183.b.b.c #22 ENSGT00940000155537.g ENSGT00940000157972.c.b ENSGT00390000017592.i ENSGT00940000159507.d ENSGT00950000182958.b.a.b.c.b.a ##34 ENSGT00940000157747.y.b ENSGT00940000158573.l ENSGT00940000157636.c.d ENSGT00980000201699.A ENSGT00550000074913.i.c ENSGT00940000156614.b.g ENSGT01070000253744.a.a.a.b.a.a.g.b ENSGT00940000162164.f.a.a ENSGT00940000158717.l Goldfish DUPLICATION Goldfish MODERN SPECIES 2677 ENSCARG00000065096 arpc1a (ENSCARG00000065074) #21 wipi2 (ENSCARG00000065060) Goldfish MODERN SPECIES 1684 arpc1a (ENSCARG00000044391) #21 arpc1b (ENSCARG00000044296) #22 wipi2 (ENSCARG00000044268) Zebrafish MODERN SPECIES 18 smcr8a (ENSDARG00000052818) shmt1 (ENSDARG00000052816) pdap1b (ENSDARG00000002967) #23 bud31 (ENSDARG00000017084) #24 cpsf4 (ENSDARG00000020217) #26 ENSDARG00000116912 atp5mf (ENSDARG00000037867) slc29a4a (ENSDARG00000059690) TNRC18 (ENSDARG00000077052) actb2 (ENSDARG00000037870) fscn1a (ENSDARG00000059680) RNF216 (ENSDARG00000087893) ENSDARG00000109826 #19 ENSDARG00000096870 smurf1 (ENSDARG00000016086) #19 arpc1a (ENSDARG00000008383) #21 arpc1b (ENSDARG00000027063) #22 wipi2 (ENSDARG00000037871) mmd2a (ENSDARG00000087446) ap5z1 (ENSDARG00000078111) foxk1 (ENSDARG00000037872) cyp3c4 (ENSDARG00000070021) ##34 cyp3c3 (ENSDARG00000037873) ##34 ENSDARG00000037874 ##34 cyp3c1 (ENSDARG00000015575) ##34 SDK1 (ENSDARG00000078866) si:ch211-222n22.1 (ENSDARG00000097269) CARD11 (ENSDARG00000052741) ENSDARG00000115627 gna12a (ENSDARG00000025826) eif3ba (ENSDARG00000059654) Clupeiformes ANCESTRAL SPECIES 119 ENSGT00390000002762.a.b ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00950000182898.a.b.o ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT00940000166074.B ENSGT00390000002752 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00940000155537 ENSGT00940000157972.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.b.a.b ##34 ENSGT00940000157747.y ENSGT00940000158573 ENSGT00940000157636.c ENSGT00980000201699.A ENSGT00550000074913.i ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 Denticle herring MODERN SPECIES 17 TOP3A (ENSDCDG00000005199) smcr8a (ENSDCDG00000005352) shmt1 (ENSDCDG00000005364) pdap1b (ENSDCDG00000007605) #23 bud31 (ENSDCDG00000007610) #24 cpsf4 (ENSDCDG00000007624) #26 atp5mf (ENSDCDG00000007629) slc29a4a (ENSDCDG00000007633) TNRC18 (ENSDCDG00000007644) actb2 (ENSDCDG00000007657) fscn1a (ENSDCDG00000007707) ENSDCDG00000007718 ENSDCDG00000007733 smurf1 (ENSDCDG00000007740) #19 ENSDCDG00000007758 arpc1a (ENSDCDG00000007835) #21 arpc1b (ENSDCDG00000007870) #22 wipi2 (ENSDCDG00000008004) mmd2a (ENSDCDG00000008292) ap5z1 (ENSDCDG00000008330) foxk1 (ENSDCDG00000008373) cyp3c4 (ENSDCDG00000008452) ##34 SDK1 (ENSDCDG00000011464) CARD11 (ENSDCDG00000014495) gna12a (ENSDCDG00000014502) eif3ba (ENSDCDG00000014514) chst12a (ENSDCDG00000014552) ENSDCDG00000014556 grifin (ENSDCDG00000014560) lfng (ENSDCDG00000014571) TTYH3 (ENSDCDG00000014596) Spotted gar MODERN SPECIES 651 bud31 (ENSLOCG00000004858) #24 PTCD1 (ENSLOCG00000004833) cpsf4 (ENSLOCG00000004814) #26 atp5mf (ENSLOCG00000004800) slc29a4a (ENSLOCG00000004787) TNRC18 (ENSLOCG00000004756) fbxl18 (ENSLOCG00000004725) actb1 (ENSLOCG00000004713) fscn1a (ENSLOCG00000004693) RNF216 (ENSLOCG00000004666) ENSLOCG00000018103 ENSLOCG00000018102 smurf1 (ENSLOCG00000004637) #19 kpna7 (ENSLOCG00000004619) #20 ENSLOCG00000004563 arpc1a (ENSLOCG00000004549) #21 arpc1b (ENSLOCG00000004536) #22 wipi2 (ENSLOCG00000004511) mmd2a (ENSLOCG00000004492) radil (ENSLOCG00000004464) ap5z1 (ENSLOCG00000004430) ENSLOCG00000004405 ##34 ENSLOCG00000004392 ##34 ENSLOCG00000004367 ##34 SDK1 (ENSLOCG00000004340) CARD11 (ENSLOCG00000004308) gna12a (ENSLOCG00000004292) AMZ1 (ENSLOCG00000004268) brat1 (ENSLOCG00000004235) eif3ba (ENSLOCG00000004215) ENSLOCG00000004203 Reedfish MODERN SPECIES 2 bud31 (ENSECRG00000011536) #24 PTCD1 (ENSECRG00000011515) cpsf4 (ENSECRG00000011433) #26 atp5mf (ENSECRG00000011385) slc29a4a (ENSECRG00000011361) ENSECRG00000011335 fbxl18 (ENSECRG00000011307) ACTB (ENSECRG00000011262) FSCN1 (ENSECRG00000020051) RNF216 (ENSECRG00000020006) ENSECRG00000019969 ENSECRG00000019928 smurf1 (ENSECRG00000019815) #19 kpna7 (ENSECRG00000019755) #20 ENSECRG00000019674 arpc1a (ENSECRG00000019611) #21 arpc1b (ENSECRG00000019549) #22 wipi2 (ENSECRG00000019499) mmd2a (ENSECRG00000019461) emp2 (ENSECRG00000019432) ENSECRG00000019398 GRIN2A (ENSECRG00000019325) hapstr1a (ENSECRG00000019279) USP7 (ENSECRG00000018912) si:ch211-157c3.4 (ENSECRG00000018814) ENSECRG00000018794 ENSECRG00000018777 ENSECRG00000018757 arhgdig (ENSECRG00000018736) rgs11 (ENSECRG00000018636) ENSECRG00000018566 Sarcopterygii ANCESTRAL SPECIES 76 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00950000182960.a.a.a.a ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A Tetrapoda ANCESTRAL SPECIES 75 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A Amniota ANCESTRAL SPECIES 11 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.b ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00390000013965 ENSGT01090000260051.b.a.b ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Mammalia ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Platypus MODERN SPECIES 11 FOXK1 (ENSOANG00000003307) AP5Z1 (ENSOANG00000003308) RADIL (ENSOANG00000003311) MMD2 (ENSOANG00000020170) WIPI2 (ENSOANG00000006569) SLC29A4 (ENSOANG00000006568) TNRC18 (ENSOANG00000006567) FBXL18 (ENSOANG00000006566) ACTB (ENSOANG00000007716) FSCN1 (ENSOANG00000030243) RNF216 (ENSOANG00000007717) ENSOANG00000007718 SMURF1 (ENSOANG00000007719) #19 KPNA7 (ENSOANG00000007721) #20 ENSOANG00000007722 ARPC1A (ENSOANG00000007724) #21 ARPC1B (ENSOANG00000007725) #22 PDAP1 (ENSOANG00000007726) #23 BUD31 (ENSOANG00000007727) #24 ENSOANG00000007728 CPSF4 (ENSOANG00000007729) #26 ATP5MF (ENSOANG00000007730) #27 ENSOANG00000007731 MAP2K3 (ENSOANG00000007732) NATD1 (ENSOANG00000007733) TMEM11 (ENSOANG00000007734) DHRS7B (ENSOANG00000007735) USP22 (ENSOANG00000001270) ENSOANG00000001268 MPRIP (ENSOANG00000001265) PLD6 (ENSOANG00000037555) Theria ANCESTRAL SPECIES 10 ENSGT00950000182958.a.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Marsupialia DUPLICATION Marsupialia ANCESTRAL SPECIES 6 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 Opossum DUPLICATION Opossum DUPLICATION Opossum MODERN SPECIES 1 ENSMODG00000025655 ENSMODG00000001609 ENSMODG00000001424 ENSMODG00000044511 ENSMODG00000029739 FAM78B (ENSMODG00000001360) UCK2 (ENSMODG00000001349) TMCO1 (ENSMODG00000001335) ENSMODG00000001321 MGST3 (ENSMODG00000001305) ENSMODG00000001296 ENSMODG00000040049 RXRG (ENSMODG00000001291) LMX1A (ENSMODG00000001270) PBX1 (ENSMODG00000001238) ENSMODG00000048722 #21 RGS5 (ENSMODG00000001208) RGS4 (ENSMODG00000001191) ENSMODG00000001176 HSD17B7 (ENSMODG00000001173) ENSMODG00000001090 DDR2 (ENSMODG00000001151) UAP1 (ENSMODG00000001084) ENSMODG00000001048 ENSMODG00000001024 ENSMODG00000041400 SPATA46 (ENSMODG00000001019) ENSMODG00000001013 ENSMODG00000000995 ENSMODG00000043123 ATF6 (ENSMODG00000000980) Opossum MODERN SPECIES 7 NUDT5 (ENSMODG00000016824) CDC123 (ENSMODG00000016826) SEC61A2 (ENSMODG00000016820) DHTKD1 (ENSMODG00000016802) UPF2 (ENSMODG00000016794) PROSER2 (ENSMODG00000044728) ENSMODG00000016773 ECHDC3 (ENSMODG00000016770) ENSMODG00000016766 CELF2 (ENSMODG00000016763) ENSMODG00000044483 ENSMODG00000043105 ENSMODG00000041063 ENSMODG00000016736 GATA3 (ENSMODG00000016735) ENSMODG00000016729 #21 TAF3 (ENSMODG00000016726) ENSMODG00000038818 ATP5F1C (ENSMODG00000016720) KIN (ENSMODG00000016717) ITIH2 (ENSMODG00000016710) ITIH5 (ENSMODG00000016687) SFMBT2 (ENSMODG00000016677) ENSMODG00000038661 PRKCQ (ENSMODG00000016663) PFKFB3 (ENSMODG00000016654) RBM17 (ENSMODG00000016648) ENSMODG00000016636 ENSMODG00000039197 MED21 (ENSMODG00000047408) TM7SF3 (ENSMODG00000016621) Opossum MODERN SPECIES 5 AP5Z1 (ENSMODG00000000891) RADIL (ENSMODG00000000926) MMD2 (ENSMODG00000000933) ENSMODG00000000956 SLC29A4 (ENSMODG00000000979) TNRC18 (ENSMODG00000000994) FBXL18 (ENSMODG00000000999) ACTB (ENSMODG00000002647) FSCN1 (ENSMODG00000001028) ENSMODG00000001052 ENSMODG00000048718 ENSMODG00000001061 SMURF1 (ENSMODG00000001079) #19 KPNA7 (ENSMODG00000001093) #20 ENSMODG00000001273 ENSMODG00000001303 #21 ARPC1B (ENSMODG00000001316) #22 PDAP1 (ENSMODG00000001324) #23 PTCD1 (ENSMODG00000001350) CPSF4 (ENSMODG00000001367) #26 ENSMODG00000025496 #27 ENSMODG00000001377 MAP2K3 (ENSMODG00000042585) TMEM11 (ENSMODG00000001408) DHRS7B (ENSMODG00000001421) USP22 (ENSMODG00000001435) ENSMODG00000001449 ENSMODG00000000717 QPRT (ENSMODG00000001456) ENSMODG00000024917 ENSMODG00000001453 Marsupialia_b ANCESTRAL SPECIES 18 ENSGT00950000182958.a.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.r #24 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a Diprotodontia ANCESTRAL SPECIES 14 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.n #21 ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 Diprotodontia_a ANCESTRAL SPECIES 13 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537.i ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.n #21 ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a.c #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a ENSGT00390000002761 koala MODERN SPECIES 130 FOXK1 (ENSPCIG00000017373) AP5Z1 (ENSPCIG00000017374) RADIL (ENSPCIG00000017375) MMD2 (ENSPCIG00000017376) ENSPCIG00000017383 SLC29A4 (ENSPCIG00000029062) FBXL18 (ENSPCIG00000015253) ACTB (ENSPCIG00000015244) FSCN1 (ENSPCIG00000015239) RNF216 (ENSPCIG00000032734) ENSPCIG00000019658 SMURF1 (ENSPCIG00000019659) #19 ARPC1A (ENSPCIG00000024794) #21 ARPC1B (ENSPCIG00000024786) #22 PDAP1 (ENSPCIG00000024781) #23 ENSPCIG00000024779 #24 PTCD1 (ENSPCIG00000024778) CPSF4 (ENSPCIG00000024776) #26 ENSPCIG00000024775 #27 ENSPCIG00000024773 MAP2K3 (ENSPCIG00000001188) ENSPCIG00000001219 TMEM11 (ENSPCIG00000001231) DHRS7B (ENSPCIG00000001242) USP22 (ENSPCIG00000001276) ENSPCIG00000001333 ENSPCIG00000001344 QPRT (ENSPCIG00000001357) Tasmanian devil MODERN SPECIES AP5Z1 (ENSSHAG00000004111) RADIL (ENSSHAG00000004658) MMD2 (ENSSHAG00000028375) WIPI2 (ENSSHAG00000007266) ENSSHAG00000028539 SLC29A4 (ENSSHAG00000008906) ENSSHAG00000010855 TNRC18 (ENSSHAG00000009526) FBXL18 (ENSSHAG00000012245) ACTB (ENSSHAG00000029431) FSCN1 (ENSSHAG00000003565) ENSSHAG00000005785 ENSSHAG00000027219 ENSSHAG00000008364 #19 ENSSHAG00000009967 ENSSHAG00000010673 #21 ARPC1B (ENSSHAG00000030346) #22 PDAP1 (ENSSHAG00000028752) #23 BUD31 (ENSSHAG00000011349) #24 PTCD1 (ENSSHAG00000011376) CPSF4 (ENSSHAG00000011533) #26 ENSSHAG00000024488 #27 ENSSHAG00000021332 MAP2K3 (ENSSHAG00000014370) NATD1 (ENSSHAG00000027545) TMEM11 (ENSSHAG00000001753) ENSSHAG00000025678 ENSSHAG00000024580 ENSSHAG00000002524 ENSSHAG00000005106 ENSSHAG00000005789 Marsupialia ANCESTRAL SPECIES ENSGT00950000183183.b.a.n #21 Opossum MODERN SPECIES 1 ENSMODG00000038892 RGS21 (ENSMODG00000027761) RGS1 (ENSMODG00000012062) RGS13 (ENSMODG00000040905) RGS2 (ENSMODG00000012101) UCHL5 (ENSMODG00000012129) ENSMODG00000036796 RO60 (ENSMODG00000012203) ENSMODG00000012212 ENSMODG00000012222 B3GALT2 (ENSMODG00000024892) ENSMODG00000051238 ENSMODG00000047710 ENSMODG00000038136 ENSMODG00000037598 ENSMODG00000048315 #21 ENSMODG00000012236 KCNT2 (ENSMODG00000012255) ENSMODG00000012284 F13B (ENSMODG00000012635) ASPM (ENSMODG00000012671) ZBTB41 (ENSMODG00000012684) CRB1 (ENSMODG00000012694) DENND1B (ENSMODG00000012699) C1orf53 (ENSMODG00000028784) LHX9 (ENSMODG00000012746) NEK7 (ENSMODG00000012789) ENSMODG00000050080 ENSMODG00000012794 PTPRC (ENSMODG00000012814) ENSMODG00000012821 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.n #21 Diprotodontia ANCESTRAL SPECIES 14 ENSGT00950000182958.a.b.b.h.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.n #21 ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a Wallaby MODERN SPECIES 1781 ENSMEUG00000005609 #21 Diprotodontia_a ANCESTRAL SPECIES 13 ENSGT00950000182958.a.b.b.h.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537.i ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b.rb ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.n #21 ENSGT00950000183183.b.a.m #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.q #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.a.c #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000162921.m.a.b.a Common wonbat MODERN SPECIES 1043 ENSVURG00010018557 FOXK1 (ENSVURG00010018549) AP5Z1 (ENSVURG00010018537) RADIL (ENSVURG00010018523) MMD2 (ENSVURG00010018492) WIPI2 (ENSVURG00010018474) SLC29A4 (ENSVURG00010018431) TNRC18 (ENSVURG00010018350) FBXL18 (ENSVURG00010018291) ACTB (ENSVURG00010018277) FSCN1 (ENSVURG00010018267) RNF216 (ENSVURG00010018252) ENSVURG00010018242 SMURF1 (ENSVURG00010018224) #19 ENSVURG00010018191 ARPC1A (ENSVURG00010018169) #21 ARPC1B (ENSVURG00010018155) #22 PDAP1 (ENSVURG00010018142) #23 BUD31 (ENSVURG00010018125) #24 PTCD1 (ENSVURG00010018118) ENSVURG00010018069 #26 ENSVURG00010018064 #27 ENSVURG00010018055 MAP2K3 (ENSVURG00010018041) ENSVURG00010018034 TMEM11 (ENSVURG00010018029) DHRS7B (ENSVURG00010018024) USP22 (ENSVURG00010018016) ENSVURG00010018011 ENSVURG00010018008 QPRT (ENSVURG00010018004) Tasmanian devil MODERN SPECIES 4 HSPA14 (ENSSHAG00000018420) MSANTD7 (ENSSHAG00000028221) CDNF (ENSSHAG00000018400) FAM107B (ENSSHAG00000029915) FRMD4A (ENSSHAG00000016639) PRPF18 (ENSSHAG00000022886) ENSSHAG00000030316 BEND7 (ENSSHAG00000016065) SEPHS1 (ENSSHAG00000015286) PHYH (ENSSHAG00000015098) UCMA (ENSSHAG00000014962) MCM10 (ENSSHAG00000014811) OPTN (ENSSHAG00000014689) ENSSHAG00000028637 CAMK1D (ENSSHAG00000013190) ENSSHAG00000023681 #21 NUDT5 (ENSSHAG00000027888) CDC123 (ENSSHAG00000009806) SEC61A2 (ENSSHAG00000009180) DHTKD1 (ENSSHAG00000008531) UPF2 (ENSSHAG00000008096) ENSSHAG00000005263 ECHDC3 (ENSSHAG00000002567) USP6NL (ENSSHAG00000015177) CELF2 (ENSSHAG00000025193) ENSSHAG00000032190 ENSSHAG00000027809 ENSSHAG00000027405 ENSSHAG00000004546 GATA3 (ENSSHAG00000018350) TAF3 (ENSSHAG00000025039) Eutheria ANCESTRAL SPECIES 22 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Boreoeutheria ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 Laurasiatheria ANCESTRAL SPECIES 10 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 Eulipotyphla ANCESTRAL SPECIES ENSGT00950000183183.b.a #21 Common shrew MODERN SPECIES 557 ARPC1A (ENSSARG00000007522) #21 Hedgehog MODERN SPECIES 1045 ARPC1A (ENSEEUG00000004378) #21 Laurasiatheria_a ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 Laurasiatheria_b ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00940000154740.a.a.c.b ENSGT00940000165768 Carnivora ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Caniformia ANCESTRAL SPECIES 8 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 Caniformia_b ANCESTRAL SPECIES 7 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Ursidae ANCESTRAL SPECIES 3 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690.b #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.b #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a.b #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.i.a #34 Ursus ANCESTRAL SPECIES 32 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT00390000006548.b.k.j.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690.b #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.b #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00940000165768 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 American black bear MODERN SPECIES 1742 KPNA7 (ENSUAMG00000008014) #20 ENSUAMG00000008018 ARPC1A (ENSUAMG00000008037) #21 ARPC1B (ENSUAMG00000008040) #22 PDAP1 (ENSUAMG00000008045) #23 BUD31 (ENSUAMG00000008048) #24 PTCD1 (ENSUAMG00000008049) CPSF4 (ENSUAMG00000008051) #26 Polar bear MODERN SPECIES 212 PMS2 (ENSUMAG00000008992) ENSUMAG00000009008 #7 ENSUMAG00000009052 #8 ENSUMAG00000009054 #9 LMTK2 (ENSUMAG00000009057) #10 TECPR1 (ENSUMAG00000009072) #12 BRI3 (ENSUMAG00000009119) #13 BAIAP2L1 (ENSUMAG00000009124) #14 ENSUMAG00000009130 NPTX2 (ENSUMAG00000009137) #16 TMEM130 (ENSUMAG00000009146) #17 ENSUMAG00000009153 #18 SMURF1 (ENSUMAG00000009290) #19 KPNA7 (ENSUMAG00000009427) #20 ENSUMAG00000009433 ARPC1A (ENSUMAG00000009440) #21 ARPC1B (ENSUMAG00000009445) #22 PDAP1 (ENSUMAG00000009448) #23 BUD31 (ENSUMAG00000009451) #24 PTCD1 (ENSUMAG00000009455) CPSF4 (ENSUMAG00000009474) #26 ENSUMAG00000009476 #27 ENSUMAG00000009480 ZNF789 (ENSUMAG00000009482) ZNF394 (ENSUMAG00000009484) #28 ZKSCAN5 (ENSUMAG00000009486) #30 FAM200A (ENSUMAG00000009489) ENSUMAG00000009492 ENSUMAG00000009495 ZSCAN25 (ENSUMAG00000009498) #32 ENSUMAG00000009516 #34 Giant Panda MODERN SPECIES 1 AIMP2 (ENSAMEG00000009065) PMS2 (ENSAMEG00000009032) ENSAMEG00000009007 #7 ENSAMEG00000008970 #8 ENSAMEG00000008965 #9 ENSAMEG00000008945 #10 TECPR1 (ENSAMEG00000008910) #12 BRI3 (ENSAMEG00000025389) #13 BAIAP2L1 (ENSAMEG00000008876) #14 NPTX2 (ENSAMEG00000006901) #16 TMEM130 (ENSAMEG00000006881) #17 TRRAP (ENSAMEG00000006794) #18 SMURF1 (ENSAMEG00000006728) #19 KPNA7 (ENSAMEG00000006691) #20 ENSAMEG00000006326 ARPC1A (ENSAMEG00000006322) #21 ARPC1B (ENSAMEG00000006289) #22 PDAP1 (ENSAMEG00000006274) #23 BUD31 (ENSAMEG00000006269) #24 PTCD1 (ENSAMEG00000006224) CPSF4 (ENSAMEG00000006252) #26 ENSAMEG00000027254 #27 ENSAMEG00000010231 ZNF789 (ENSAMEG00000006221) ZNF394 (ENSAMEG00000024236) #28 ZKSCAN5 (ENSAMEG00000006213) #30 FAM200A (ENSAMEG00000030624) ZNF655 (ENSAMEG00000006210) #31 TMEM225B (ENSAMEG00000006209) ZSCAN25 (ENSAMEG00000028606) #32 ENSAMEG00000004376 #34 Mustelinae ANCESTRAL SPECIES 64 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 American mink MODERN SPECIES 487 TMEM130 (ENSNVIG00000005922) #17 ENSNVIG00000005938 #18 ENSNVIG00000005969 #18 SMURF1 (ENSNVIG00000006131) #19 KPNA7 (ENSNVIG00000007636) #20 ENSNVIG00000007675 ARPC1A (ENSNVIG00000007739) #21 ARPC1B (ENSNVIG00000007787) #22 PDAP1 (ENSNVIG00000007834) #23 BUD31 (ENSNVIG00000007866) #24 PTCD1 (ENSNVIG00000007876) CPSF4 (ENSNVIG00000007981) #26 ENSNVIG00000008040 #27 ENSNVIG00000008074 ZNF789 (ENSNVIG00000008084) ENSNVIG00000008098 #28 ZKSCAN5 (ENSNVIG00000008113) #30 ZNF655 (ENSNVIG00000008181) #31 TMEM225B (ENSNVIG00000008271) ZSCAN25 (ENSNVIG00000008324) #32 ENSNVIG00000008363 Canidae ANCESTRAL SPECIES 3 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.p.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.w #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Canis_lupus ANCESTRAL SPECIES 2 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000153096.b.c.b.b.h ENSGT00940000161804.c.a.a ENSGT00940000158690 #19 ENSGT01050000244891.B.p.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.w #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.w #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Dog MODERN SPECIES 34 ENSCAFG00845009703 #8 OCM2 (ENSCAFG00845009625) #9 ENSCAFG00845009599 LMTK2 (ENSCAFG00845009531) #10 TECPR1 (ENSCAFG00845009230) #12 BRI3 (ENSCAFG00845009124) #13 BAIAP2L1 (ENSCAFG00845009005) #14 NPTX2 (ENSCAFG00845004136) #16 TMEM130 (ENSCAFG00845004094) #17 TRRAP (ENSCAFG00845003973) #18 ENSCAFG00845003892 ENSCAFG00845003878 SMURF1 (ENSCAFG00845003851) #19 ENSCAFG00845003829 #20 MYH16 (ENSCAFG00845003682) ARPC1A (ENSCAFG00845003616) #21 PDAP1 (ENSCAFG00845003605) #23 BUD31 (ENSCAFG00845003589) #24 PTCD1 (ENSCAFG00845003559) ARPC1B (ENSCAFG00845003541) #22 ATP5J2 (ENSCAFG00845003518) #27 CPSF4 (ENSCAFG00845003492) #26 ENSCAFG00845003476 ZNF789 (ENSCAFG00845003457) ZNF394 (ENSCAFG00845003436) #28 ZKSCAN5 (ENSCAFG00845003412) #30 FAM200A (ENSCAFG00845003383) ZNF655 (ENSCAFG00845003343) #31 TMEM225B (ENSCAFG00845003304) ENSCAFG00845003272 #32 OR1F15 (ENSCAFG00845003253) Dingo MODERN SPECIES 351 ENSCAFG00020016892 #9 ENSCAFG00020016887 LMTK2 (ENSCAFG00020016884) #10 BHLHA15 (ENSCAFG00020016879) #11 TECPR1 (ENSCAFG00020016803) #12 BRI3 (ENSCAFG00020016791) #13 BAIAP2L1 (ENSCAFG00020016786) #14 NPTX2 (ENSCAFG00020016774) #16 TMEM130 (ENSCAFG00020016766) #17 TRRAP (ENSCAFG00020015718) #18 ENSCAFG00020015608 ENSCAFG00020015606 SMURF1 (ENSCAFG00020014606) #19 KPNA7 (ENSCAFG00020014578) #20 ENSCAFG00020014574 ARPC1A (ENSCAFG00020014569) #21 ARPC1B (ENSCAFG00020014497) #22 PDAP1 (ENSCAFG00020014491) #23 BUD31 (ENSCAFG00020014486) #24 PTCD1 (ENSCAFG00020014480) CPSF4 (ENSCAFG00020014462) #26 ENSCAFG00020014459 #27 ENSCAFG00020014458 ZNF789 (ENSCAFG00020014455) ZNF394 (ENSCAFG00020014454) #28 ZKSCAN5 (ENSCAFG00020014453) #30 FAM200A (ENSCAFG00020014452) ENSCAFG00020014451 TMEM225B (ENSCAFG00020014448) ZSCAN25 (ENSCAFG00020014447) #32 ENSCAFG00020014443 Red fox MODERN SPECIES 218 CCZ1 (ENSVVUG00000015134) #8 OCM2 (ENSVVUG00000015131) #9 LMTK2 (ENSVVUG00000015127) #10 BHLHA15 (ENSVVUG00000015125) #11 TECPR1 (ENSVVUG00000015112) #12 BRI3 (ENSVVUG00000015104) #13 BAIAP2L1 (ENSVVUG00000015091) #14 NPTX2 (ENSVVUG00000015063) #16 ENSVVUG00000015058 TMEM130 (ENSVVUG00000015055) #17 ENSVVUG00000015052 TRRAP (ENSVVUG00000011404) #18 SMURF1 (ENSVVUG00000009130) #19 ENSVVUG00000009096 #20 ENSVVUG00000009006 ARPC1A (ENSVVUG00000008994) #21 ARPC1B (ENSVVUG00000008857) #22 PDAP1 (ENSVVUG00000008843) #23 BUD31 (ENSVVUG00000008841) #24 PTCD1 (ENSVVUG00000008836) CPSF4 (ENSVVUG00000008824) #26 ENSVVUG00000008815 ZNF394 (ENSVVUG00000008797) #28 ZKSCAN5 (ENSVVUG00000008758) #30 FAM200A (ENSVVUG00000008745) ZNF655 (ENSVVUG00000008738) #31 TMEM225B (ENSVVUG00000008732) ZSCAN25 (ENSVVUG00000008713) #32 ENSVVUG00000008703 ENSVVUG00000008658 #34 Felidae ANCESTRAL SPECIES 19 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a.g #34 Panthera ANCESTRAL SPECIES 27 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT00950000182958.a.b.b.j.i.a.g #34 Tiger MODERN SPECIES 155 AIMP2 (ENSPTIG00000018361) PMS2 (ENSPTIG00000015503) ENSPTIG00000014426 #7 ENSPTIG00000013267 ENSPTIG00000010995 #8 ENSPTIG00000009441 #9 LMTK2 (ENSPTIG00000008096) #10 TECPR1 (ENSPTIG00000005029) #12 BAIAP2L1 (ENSPTIG00000020036) #14 NPTX2 (ENSPTIG00000019675) #16 TMEM130 (ENSPTIG00000017143) #17 ENSPTIG00000016839 SMURF1 (ENSPTIG00000019948) #19 KPNA7 (ENSPTIG00000019265) #20 ENSPTIG00000015791 ARPC1A (ENSPTIG00000015204) #21 ARPC1B (ENSPTIG00000014065) #22 PDAP1 (ENSPTIG00000012964) #23 BUD31 (ENSPTIG00000011324) #24 PTCD1 (ENSPTIG00000010617) CPSF4 (ENSPTIG00000005604) #26 ENSPTIG00000004326 #27 ZNF789 (ENSPTIG00000001790) ZNF394 (ENSPTIG00000020093) #28 ZKSCAN5 (ENSPTIG00000018483) #30 FAM200A (ENSPTIG00000006096) ZNF655 (ENSPTIG00000015445) #31 TMEM225B (ENSPTIG00000013612) ZSCAN25 (ENSPTIG00000012424) #32 ENSPTIG00000005985 ENSPTIG00000011815 Panthera_a ANCESTRAL SPECIES 27 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.v.b.a.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000183014.f.a.h.p ENSGT00930000152728.c leopard MODERN SPECIES 91 ENSPPRG00000003334 #8 ENSPPRG00000001866 #9 LMTK2 (ENSPPRG00000001646) #10 BHLHA15 (ENSPPRG00000022063) #11 TECPR1 (ENSPPRG00000000441) #12 BRI3 (ENSPPRG00000022966) #13 BAIAP2L1 (ENSPPRG00000023080) #14 ENSPPRG00000023746 NPTX2 (ENSPPRG00000024054) #16 TMEM130 (ENSPPRG00000024166) #17 TRRAP (ENSPPRG00000024644) #18 ENSPPRG00000003908 SMURF1 (ENSPPRG00000013759) #19 KPNA7 (ENSPPRG00000011372) #20 ENSPPRG00000010473 ARPC1A (ENSPPRG00000008068) #21 ARPC1B (ENSPPRG00000007519) #22 PDAP1 (ENSPPRG00000007263) #23 BUD31 (ENSPPRG00000004354) #24 PTCD1 (ENSPPRG00000003478) CPSF4 (ENSPPRG00000003134) #26 ENSPPRG00000001557 #27 ZNF789 (ENSPPRG00000001332) ZNF394 (ENSPPRG00000000948) #28 ZKSCAN5 (ENSPPRG00000000685) #30 FAM200A (ENSPPRG00000020418) ZNF655 (ENSPPRG00000023556) #31 TMEM225B (ENSPPRG00000021822) ZSCAN25 (ENSPPRG00000020661) #32 ENSPPRG00000018011 ENSPPRG00000020127 lion MODERN SPECIES 16 ENSPLOG00000012710 #7 ENSPLOG00000012512 #8 ENSPLOG00000012444 #9 LMTK2 (ENSPLOG00000012296) #10 BHLHA15 (ENSPLOG00000012274) #11 TECPR1 (ENSPLOG00000012232) #12 BRI3 (ENSPLOG00000012123) #13 BAIAP2L1 (ENSPLOG00000011965) #14 ENSPLOG00000011906 NPTX2 (ENSPLOG00000011785) #16 TMEM130 (ENSPLOG00000011537) #17 TRRAP (ENSPLOG00000022523) #18 SMURF1 (ENSPLOG00000022456) #19 KPNA7 (ENSPLOG00000022405) #20 ENSPLOG00000022335 ARPC1A (ENSPLOG00000022304) #21 ARPC1B (ENSPLOG00000022242) #22 PDAP1 (ENSPLOG00000022211) #23 BUD31 (ENSPLOG00000022188) #24 PTCD1 (ENSPLOG00000022137) CPSF4 (ENSPLOG00000022084) #26 ENSPLOG00000022043 #27 ZNF789 (ENSPLOG00000022019) ZNF394 (ENSPLOG00000022000) #28 ZKSCAN5 (ENSPLOG00000021985) #30 FAM200A (ENSPLOG00000021967) ZNF655 (ENSPLOG00000021930) #31 ENSPLOG00000021878 ZSCAN25 (ENSPLOG00000021838) #32 ENSPLOG00000021805 ENSPLOG00000021785 Cat MODERN SPECIES 247 AIMP2 (ENSFCAG00000022896) PMS2 (ENSFCAG00000008459) ENSFCAG00000018906 #7 ENSFCAG00000031938 #8 OCM (ENSFCAG00000000313) #9 LMTK2 (ENSFCAG00000030546) #10 TECPR1 (ENSFCAG00000000316) #12 BRI3 (ENSFCAG00000045373) #13 BAIAP2L1 (ENSFCAG00000000317) #14 NPTX2 (ENSFCAG00000004394) #16 TMEM130 (ENSFCAG00000036518) #17 TRRAP (ENSFCAG00000015061) #18 SMURF1 (ENSFCAG00000015062) #19 KPNA7 (ENSFCAG00000015063) #20 MYH16 (ENSFCAG00000015064) ARPC1A (ENSFCAG00000015065) #21 PDAP1 (ENSFCAG00000015067) #23 BUD31 (ENSFCAG00000027449) #24 PTCD1 (ENSFCAG00000015069) CPSF4 (ENSFCAG00000015070) #26 ENSFCAG00000037096 #27 ZNF789 (ENSFCAG00000015072) ZNF394 (ENSFCAG00000031324) #28 ZKSCAN5 (ENSFCAG00000026733) #30 ZNF655 (ENSFCAG00000024492) #31 TMEM225B (ENSFCAG00000024064) ZSCAN25 (ENSFCAG00000006593) #32 ENSFCAG00000025929 CYP3A131 (ENSFCAG00000046713) #34 CYP3A132 (ENSFCAG00000040455) #34 ENSFCAG00000023135 #34 Laurasiatheria_c ANCESTRAL SPECIES 12 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Chiroptera ANCESTRAL SPECIES 37 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Microchiroptera ANCESTRAL SPECIES 39 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Microbat MODERN SPECIES 937 GRAMD2B (ENSMLUG00000002933) ALDH7A1 (ENSMLUG00000002944) ENSMLUG00000000184 LMNB1 (ENSMLUG00000009721) MARCHF3 (ENSMLUG00000009747) C5orf63 (ENSMLUG00000002467) MEGF10 (ENSMLUG00000010818) PRRC1 (ENSMLUG00000010866) CTXN3 (ENSMLUG00000009416) SLC12A2 (ENSMLUG00000008327) FBN2 (ENSMLUG00000008374) SLC27A6 (ENSMLUG00000011142) ISOC1 (ENSMLUG00000023846) ENSMLUG00000029686 ENSMLUG00000010877 ARPC1A (ENSMLUG00000010912) #21 ARPC1B (ENSMLUG00000010933) #22 PDAP1 (ENSMLUG00000010959) #23 BUD31 (ENSMLUG00000010973) #24 CPSF4 (ENSMLUG00000010980) #26 PTCD1 (ENSMLUG00000010994) ZNF789 (ENSMLUG00000017347) ENSMLUG00000017348 #28 ENSMLUG00000017349 ENSMLUG00000017351 TMEM225B (ENSMLUG00000023300) ENSMLUG00000017353 #32 ENSMLUG00000027083 ENSMLUG00000024696 #34 ENSMLUG00000026442 #34 TRIM4 (ENSMLUG00000001995) Greater horseshoe bat MODERN SPECIES 25 ENSRFEG00010000899 TEX43 (ENSRFEG00010000914) LMNB1 (ENSRFEG00010000927) ENSRFEG00010000967 MARCHF3 (ENSRFEG00010000985) C5orf63 (ENSRFEG00010001015) MEGF10 (ENSRFEG00010001053) PRRC1 (ENSRFEG00010001126) CTXN3 (ENSRFEG00010001164) CCDC192 (ENSRFEG00010001188) SLC12A2 (ENSRFEG00010001326) FBN2 (ENSRFEG00010001705) SLC27A6 (ENSRFEG00010001758) ENSRFEG00010001776 ENSRFEG00010001816 ARPC1A (ENSRFEG00010001888) #21 ARPC1B (ENSRFEG00010001904) #22 PDAP1 (ENSRFEG00010001955) #23 BUD31 (ENSRFEG00010001998) #24 PTCD1 (ENSRFEG00010002023) CPSF4 (ENSRFEG00010002049) #26 ENSRFEG00010002114 #27 ENSRFEG00010002156 ZNF789 (ENSRFEG00010002174) ZNF394 (ENSRFEG00010002189) #28 ZKSCAN5 (ENSRFEG00010002216) #30 FAM200A (ENSRFEG00010002229) ZNF655 (ENSRFEG00010002275) #31 ENSRFEG00010002302 TMEM225B (ENSRFEG00010002313) ZSCAN25 (ENSRFEG00010002331) #32 Megabat MODERN SPECIES 3872 ENSPVAG00000007520 ARPC1A (ENSPVAG00000007521) #21 ARPC1B (ENSPVAG00000007523) #22 PDAP1 (ENSPVAG00000007524) #23 BUD31 (ENSPVAG00000007527) #24 PTCD1 (ENSPVAG00000007529) CPSF4 (ENSPVAG00000007531) #26 ATP5MF (ENSPVAG00000007533) #27 Equus DUPLICATION Equus ANCESTRAL SPECIES 22 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.o #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b.a ENSGT01050000244868.a.a.a.a.a.b.m.a ENSGT00940000154249.a.a ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000162113 #32 Donkey MODERN SPECIES 5 AIMP2 (ENSEASG00005000759) PMS2 (ENSEASG00005000763) ENSEASG00005000768 #7 ENSEASG00005000796 #8 ENSEASG00005000807 #9 LMTK2 (ENSEASG00005000819) #10 BHLHA15 (ENSEASG00005000829) #11 TECPR1 (ENSEASG00005000888) #12 ENSEASG00005023687 BAIAP2L1 (ENSEASG00005001273) #14 NPTX2 (ENSEASG00005001282) #16 TMEM130 (ENSEASG00005001296) #17 TRRAP (ENSEASG00005001513) #18 SMURF1 (ENSEASG00005002115) #19 KPNA7 (ENSEASG00005002435) #20 ENSEASG00005002444 #21 ARPC1B (ENSEASG00005002462) #22 PDAP1 (ENSEASG00005033136) #23 BUD31 (ENSEASG00005032549) #24 PTCD1 (ENSEASG00005002480) ENSEASG00005002487 #26 ENSEASG00005030979 #27 Horse MODERN SPECIES 4 ANKRD61 (ENSECAG00000021190) AIMP2 (ENSECAG00000000053) PMS2 (ENSECAG00000014072) ENSECAG00000004548 #7 ENSECAG00000011387 #8 OCM (ENSECAG00000000243) #9 LMTK2 (ENSECAG00000019598) #10 TECPR1 (ENSECAG00000003104) #12 ENSECAG00000031100 #13 BAIAP2L1 (ENSECAG00000012734) #14 NPTX2 (ENSECAG00000012370) #16 TMEM130 (ENSECAG00000009541) #17 TRRAP (ENSECAG00000010540) #18 SMURF1 (ENSECAG00000017400) #19 KPNA7 (ENSECAG00000000554) #20 ENSECAG00000050899 #21 ARPC1B (ENSECAG00000024991) #22 PDAP1 (ENSECAG00000024426) #23 BUD31 (ENSECAG00000024151) #24 PTCD1 (ENSECAG00000016617) CPSF4 (ENSECAG00000007525) #26 ATP5MF (ENSECAG00000002088) #27 ENSECAG00000036787 ENSECAG00000022200 ZNF789 (ENSECAG00000011061) ENSECAG00000040295 ZNF394 (ENSECAG00000011549) #28 ZKSCAN5 (ENSECAG00000012353) #30 FAM200A (ENSECAG00000038549) ZNF655 (ENSECAG00000019599) #31 ENSECAG00000058567 Equus ANCESTRAL SPECIES 4 ENSGT00730000111374 ENSGT00940000161080 ENSGT01030000234614.C ENSGT00510000048454 ENSGT00940000162846 ENSGT00940000160967 ENSGT00940000153246.a.a.a ENSGT00390000017366 ENSGT00940000158575 ENSGT00940000158358 ENSGT00390000015967 ENSGT00940000156052 ENSGT00940000160359 ENSGT00390000016435 ENSGT00950000183037.A.a.c.a ENSGT00950000183183.b.a.p #21 ENSGT00950000183037.A.a.c.b ENSGT00940000157431 ENSGT00940000161890 ENSGT00950000182938.b.b.b.b.a ENSGT00940000157689 ENSGT00940000156476 ENSGT00390000016075 ENSGT00390000000860.a ENSGT00390000001424 ENSGT00390000002564.b ENSGT00940000157577 ENSGT00440000038107 ENSGT00390000002672 ENSGT00390000015516 ENSGT00940000153230.C Donkey MODERN SPECIES 11 TBC1D21 (ENSEASG00005005185) LOXL1 (ENSEASG00005005177) STOML1 (ENSEASG00005005172) PML (ENSEASG00005005165) ISLR2 (ENSEASG00005023672) ISLR (ENSEASG00005038002) STRA6 (ENSEASG00005005153) CCDC33 (ENSEASG00005005146) CYP11A1 (ENSEASG00005005104) SEMA7A (ENSEASG00005005095) UBL7 (ENSEASG00005005088) ARID3B (ENSEASG00005005082) CLK3 (ENSEASG00005005075) EDC3 (ENSEASG00005005071) CYP1A1 (ENSEASG00005015782) ENSEASG00005015780 #21 CYP1A2 (ENSEASG00005015776) ENSEASG00005015771 LMAN1L (ENSEASG00005015768) CPLX3 (ENSEASG00005028890) ULK3 (ENSEASG00005015761) SCAMP2 (ENSEASG00005036882) MPI (ENSEASG00005015754) FAM219B (ENSEASG00005015751) COX5A (ENSEASG00005015747) RPP25 (ENSEASG00005034267) ENSEASG00005033277 PPCDC (ENSEASG00005015742) C15orf39 (ENSEASG00005029877) COMMD4 (ENSEASG00005015738) NEIL1 (ENSEASG00005015734) Horse MODERN SPECIES INSYN1 (ENSECAG00000001634) TBC1D21 (ENSECAG00000024937) LOXL1 (ENSECAG00000023405) STOML1 (ENSECAG00000019789) PML (ENSECAG00000004617) ISLR2 (ENSECAG00000036372) STRA6 (ENSECAG00000016969) CCDC33 (ENSECAG00000012568) CYP11A1 (ENSECAG00000017494) SEMA7A (ENSECAG00000000173) UBL7 (ENSECAG00000014151) ARID3B (ENSECAG00000013123) CLK3 (ENSECAG00000022269) EDC3 (ENSECAG00000017994) CYP1A1 (ENSECAG00000013817) ENSECAG00000012465 #21 CYP1A2 (ENSECAG00000008153) CSK (ENSECAG00000013581) LMAN1L (ENSECAG00000008951) ULK3 (ENSECAG00000021084) SCAMP2 (ENSECAG00000015415) MPI (ENSECAG00000011033) FAM219B (ENSECAG00000040578) COX5A (ENSECAG00000000160) RPP25 (ENSECAG00000003353) SCAMP5 (ENSECAG00000021070) PPCDC (ENSECAG00000019339) C1H15orf39 (ENSECAG00000017739) COMMD4 (ENSECAG00000014814) NEIL1 (ENSECAG00000000925) MAN2C1 (ENSECAG00000021864) Artiodactyla ANCESTRAL SPECIES 10 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 Suina ANCESTRAL SPECIES 46 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.k.a.c #34 Chacoan peccary MODERN SPECIES 833 PMS2 (ENSCWAG00000010164) ENSCWAG00000010359 #7 ENSCWAG00000010481 #8 ENSCWAG00000010569 #9 LMTK2 (ENSCWAG00000010619) #10 BHLHA15 (ENSCWAG00000010732) #11 TECPR1 (ENSCWAG00000010756) #12 BRI3 (ENSCWAG00000010841) #13 BAIAP2L1 (ENSCWAG00000010874) #14 NPTX2 (ENSCWAG00000010978) #16 TMEM130 (ENSCWAG00000011040) #17 TRRAP (ENSCWAG00000011543) #18 SMURF1 (ENSCWAG00000011777) #19 KPNA7 (ENSCWAG00000011846) #20 ENSCWAG00000011967 ARPC1A (ENSCWAG00000012355) #21 ARPC1B (ENSCWAG00000012397) #22 PDAP1 (ENSCWAG00000012444) #23 BUD31 (ENSCWAG00000012494) #24 PTCD1 (ENSCWAG00000012549) CPSF4 (ENSCWAG00000012575) #26 ENSCWAG00000012721 #27 ENSCWAG00000012841 #28 ZKSCAN5 (ENSCWAG00000012872) #30 ZNF789 (ENSCWAG00000012955) FAM200A (ENSCWAG00000012995) ZNF655 (ENSCWAG00000013035) #31 TMEM225B (ENSCWAG00000013216) ZSCAN25 (ENSCWAG00000013260) #32 ENSCWAG00000013302 ENSCWAG00000013404 #34 Pig MODERN SPECIES 11 ENSSSCG00000007589 #7 ENSSSCG00000025940 #8 ENSSSCG00000007596 #9 LMTK2 (ENSSSCG00000007599) #10 BHLHA15 (ENSSSCG00000038489) #11 TECPR1 (ENSSSCG00000007601) #12 BRI3 (ENSSSCG00000037605) #13 BAIAP2L1 (ENSSSCG00000007602) #14 NPTX2 (ENSSSCG00000007603) #16 TMEM130 (ENSSSCG00000007605) #17 TRRAP (ENSSSCG00000007606) #18 SMURF1 (ENSSSCG00000030153) #19 KPNA7 (ENSSSCG00000007607) #20 ARPC1B (ENSSSCG00000007625) #22 ENSSSCG00000035534 ARPC1A (ENSSSCG00000007609) #21 PDAP1 (ENSSSCG00000033450) #23 BUD31 (ENSSSCG00000007623) #24 PTCD1 (ENSSSCG00000007622) CPSF4 (ENSSSCG00000026896) #26 ENSSSCG00000034019 #27 ZNF394 (ENSSSCG00000036665) #28 ZKSCAN5 (ENSSSCG00000031809) #30 ZNF789 (ENSSSCG00000007618) FAM200A (ENSSSCG00000029175) ZNF655 (ENSSSCG00000007617) #31 ENSSSCG00000031485 TMEM225B (ENSSSCG00000043842) ZSCAN25 (ENSSSCG00000039842) #32 ENSSSCG00000023320 #34 ENSSSCG00000060626 Artiodactyla_a ANCESTRAL SPECIES 10 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 Artiodactyla_b DUPLICATION Artiodactyla_b DUPLICATION Artiodactyla_b ANCESTRAL SPECIES 9 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 Cetacea DUPLICATION Cetacea DUPLICATION Cetacea ANCESTRAL SPECIES 15 ENSGT00940000155704 ENSGT00390000003585 ENSGT00390000015936 ENSGT00520000055570.B ENSGT00390000017022 ENSGT00940000154071.B ENSGT00940000153370.a.b ENSGT00390000002675 ENSGT00940000158461 ENSGT00390000018361 ENSGT00940000158966 ENSGT00890000139531 ENSGT00390000012040 ENSGT00510000047893 ENSGT00940000156958 ENSGT00950000183183.b.a.q.a.a.a #21 ENSGT00390000009258 ENSGT00940000153342.b ENSGT00940000157680 ENSGT00390000011529 ENSGT00940000156048.b ENSGT00390000003512 ENSGT00940000157464 ENSGT00940000156644 ENSGT00940000154289.B ENSGT00940000161899 Odontoceti ANCESTRAL SPECIES 14 ENSGT00940000155704 ENSGT00390000003585 ENSGT00390000015936 ENSGT00520000055570.B ENSGT00390000017022 ENSGT00940000154071.B ENSGT00940000153370.a.b ENSGT00390000002675 ENSGT00940000158461 ENSGT00390000018361 ENSGT00940000158966 ENSGT00890000139531 ENSGT00390000012040 ENSGT00510000047893 ENSGT00940000156958 ENSGT00950000183183.b.a.q.a.a.a #21 ENSGT00390000009258 ENSGT00940000153342.b ENSGT00940000157680 ENSGT00390000011529 ENSGT00940000156048.b ENSGT00390000003512 ENSGT00940000157464 ENSGT00940000156644 ENSGT00940000154289.B ENSGT00940000161899 Odontoceti_a ANCESTRAL SPECIES 11 ENSGT00940000155704 ENSGT00390000003585 ENSGT00390000015936 ENSGT00520000055570.B ENSGT00390000017022 ENSGT00940000154071.B ENSGT00940000153370.a.b ENSGT00390000002675 ENSGT00940000158461 ENSGT00390000018361 ENSGT00940000158966 ENSGT00890000139531 ENSGT00390000012040 ENSGT00510000047893 ENSGT00940000156958 ENSGT00950000183183.b.a.q.a.a.a #21 ENSGT00390000009258 ENSGT00940000153342.b ENSGT00940000157680 ENSGT00390000011529 ENSGT00940000156048.b ENSGT00390000003512 ENSGT00940000157464 ENSGT00940000156644 Odontoceti_b ANCESTRAL SPECIES 14 ENSGT00940000155704 ENSGT00390000003585 ENSGT00390000015936 ENSGT00520000055570.B ENSGT00390000017022 ENSGT00940000154071.B ENSGT00940000153370.a.b ENSGT00390000002675 ENSGT00940000158461 ENSGT00390000018361 ENSGT00940000158966 ENSGT00890000139531 ENSGT00390000012040 ENSGT00510000047893 ENSGT00940000156958 ENSGT00950000183183.b.a.q.a.a.a #21 ENSGT00390000009258 ENSGT00940000153342.b ENSGT00940000157680 ENSGT00390000011529 ENSGT00940000156048.b ENSGT00390000003512 ENSGT00940000157464 ENSGT00940000156644 Monodontidae ANCESTRAL SPECIES 14 ENSGT00940000155704 ENSGT00390000003585 ENSGT00390000015936 ENSGT00520000055570.B ENSGT00390000017022 ENSGT00940000154071.B ENSGT00940000153370.a.b ENSGT00390000002675 ENSGT00940000158461 ENSGT00390000018361 ENSGT00940000158966 ENSGT00890000139531 ENSGT00390000012040 ENSGT00510000047893 ENSGT00940000156958 ENSGT00950000183183.b.a.q.a.a.a #21 ENSGT00390000009258 ENSGT00940000153342.b ENSGT00940000157680 ENSGT00390000011529 ENSGT00940000156048.b ENSGT00390000003512 ENSGT00940000157464 ENSGT00940000156644 Beluga whale MODERN SPECIES 46 EGLN1 (ENSDLEG00000007575) SPRTN (ENSDLEG00000007584) EXOC8 (ENSDLEG00000007592) GNPAT (ENSDLEG00000007597) C1orf131 (ENSDLEG00000007655) TRIM67 (ENSDLEG00000007668) FAM89A (ENSDLEG00000007676) ARV1 (ENSDLEG00000007682) TTC13 (ENSDLEG00000007691) CUNH1orf198 (ENSDLEG00000007710) ENSDLEG00000007732 AGT (ENSDLEG00000007740) COG2 (ENSDLEG00000007748) PGBD5 (ENSDLEG00000007772) GALNT2 (ENSDLEG00000007783) ENSDLEG00000007798 #21 ENSDLEG00000007800 URB2 (ENSDLEG00000007804) ENSDLEG00000007807 ENSDLEG00000007813 ABCB10 (ENSDLEG00000007817) NUP133 (ENSDLEG00000007858) ACTA1 (ENSDLEG00000008382) CCSAP (ENSDLEG00000008558) RAB4A (ENSDLEG00000008574) RHOU (ENSDLEG00000008603) Vaquita MODERN SPECIES 7 TSNAX (ENSPSNG00000013890) EGLN1 (ENSPSNG00000013673) SPRTN (ENSPSNG00000013563) EXOC8 (ENSPSNG00000013521) GNPAT (ENSPSNG00000013442) C1orf131 (ENSPSNG00000013320) TRIM67 (ENSPSNG00000012977) FAM89A (ENSPSNG00000012928) ARV1 (ENSPSNG00000012750) TTC13 (ENSPSNG00000012646) C1orf198 (ENSPSNG00000012527) AGT (ENSPSNG00000012417) COG2 (ENSPSNG00000012333) PGBD5 (ENSPSNG00000012234) GALNT2 (ENSPSNG00000012093) ENSPSNG00000012051 #21 URB2 (ENSPSNG00000011968) TAF5L (ENSPSNG00000011894) ABCB10 (ENSPSNG00000011863) NUP133 (ENSPSNG00000011744) ACTA1 (ENSPSNG00000011648) CCSAP (ENSPSNG00000011607) RAB4A (ENSPSNG00000011533) RHOU (ENSPSNG00000011465) ENSPSNG00000011259 ENSPSNG00000011154 ENSPSNG00000011130 ENSPSNG00000011112 ENSPSNG00000011044 Blue whale MODERN SPECIES 7 SPRTN (ENSBMSG00010013599) EXOC8 (ENSBMSG00010013614) GNPAT (ENSBMSG00010013626) C1orf131 (ENSBMSG00010013641) TRIM67 (ENSBMSG00010013662) FAM89A (ENSBMSG00010013697) TTC13 (ENSBMSG00010013728) ENSBMSG00010013788 C1orf198 (ENSBMSG00010013799) CAPN9 (ENSBMSG00010013893) AGT (ENSBMSG00010014152) COG2 (ENSBMSG00010014222) PGBD5 (ENSBMSG00010014408) GALNT2 (ENSBMSG00010014469) ENSBMSG00010014518 ENSBMSG00010014536 #21 URB2 (ENSBMSG00010014573) ENSBMSG00010014627 ABCB10 (ENSBMSG00010014666) NUP133 (ENSBMSG00010014739) ACTA1 (ENSBMSG00010014761) CCSAP (ENSBMSG00010014786) RAB4A (ENSBMSG00010014811) ENSBMSG00010014844 RHOU (ENSBMSG00010014859) ENSBMSG00010014918 ENSBMSG00010014972 Cetacea ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.a.b #21 Blue whale MODERN SPECIES 40 ENSBMSG00010015603 ENSBMSG00010015592 RPS6KA3 (ENSBMSG00010015348) ENSBMSG00010015217 MAP7D2 (ENSBMSG00010015124) BCLAF3 (ENSBMSG00010015038) ENSBMSG00010014991 SH3KBP1 (ENSBMSG00010014785) MAP3K15 (ENSBMSG00010014594) PDHA1 (ENSBMSG00010014498) ENSBMSG00010014456 ADGRG2 (ENSBMSG00010014260) PHKA2 (ENSBMSG00010014126) PPEF1 (ENSBMSG00010014080) RS1 (ENSBMSG00010014012) ENSBMSG00010013995 #21 ENSBMSG00010013988 CDKL5 (ENSBMSG00010013954) ENSBMSG00010013905 ENSBMSG00010013867 ENSBMSG00010013823 ENSBMSG00010013811 RAI2 (ENSBMSG00010021187) ENSBMSG00010021146 ENSBMSG00010021135 NHS (ENSBMSG00010021097) ENSBMSG00010021062 ENSBMSG00010021040 RBBP7 (ENSBMSG00010020995) TXLNG (ENSBMSG00010020949) SYAP1 (ENSBMSG00010020905) Odontoceti ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.a.b #21 Odontoceti_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.a.b #21 Odontoceti_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.a.b #21 Monodontidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.a.b #21 Beluga whale MODERN SPECIES 41 RPS6KA3 (ENSDLEG00000021020) EIF1AX (ENSDLEG00000021017) MAP7D2 (ENSDLEG00000020985) BCLAF3 (ENSDLEG00000020974) ENSDLEG00000020972 ENSDLEG00000020970 ENSDLEG00000020966 SH3KBP1 (ENSDLEG00000020919) MAP3K15 (ENSDLEG00000020876) PDHA1 (ENSDLEG00000020859) ADGRG2 (ENSDLEG00000020709) PHKA2 (ENSDLEG00000020633) PPEF1 (ENSDLEG00000020612) RS1 (ENSDLEG00000020598) CDKL5 (ENSDLEG00000020591) ENSDLEG00000020586 #21 ENSDLEG00000020579 ENSDLEG00000020574 ENSDLEG00000020569 RAI2 (ENSDLEG00000020567) SCML1 (ENSDLEG00000020562) NHS (ENSDLEG00000020557) ENSDLEG00000020554 ENSDLEG00000020552 REPS2 (ENSDLEG00000020540) RBBP7 (ENSDLEG00000020531) TXLNG (ENSDLEG00000020525) SYAP1 (ENSDLEG00000020521) S100G (ENSDLEG00000020514) CTPS2 (ENSDLEG00000020502) GRPR (ENSDLEG00000020499) Cetacea ANCESTRAL SPECIES 3 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Odontoceti ANCESTRAL SPECIES 3 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Sperm whale MODERN SPECIES 5 ZSCAN21 (ENSPCTG00005009873) GJC3 (ENSPCTG00005009920) TRIM4 (ENSPCTG00005009981) ENSPCTG00005010186 #34 ENSPCTG00005011057 #34 TMEM225B (ENSPCTG00005011436) FAM200A (ENSPCTG00005011475) ZNF789 (ENSPCTG00005011499) ZKSCAN5 (ENSPCTG00005011547) #30 ZNF394 (ENSPCTG00005011596) #28 TMEM130 (ENSPCTG00005011667) #17 TRRAP (ENSPCTG00005012036) #18 SMURF1 (ENSPCTG00005012298) #19 KPNA7 (ENSPCTG00005012406) #20 ENSPCTG00005012809 ENSPCTG00005013240 #21 NPTX2 (ENSPCTG00005013455) #16 BAIAP2L1 (ENSPCTG00005013574) #14 BRI3 (ENSPCTG00005013964) #13 TECPR1 (ENSPCTG00005014032) #12 BHLHA15 (ENSPCTG00005014363) #11 LMTK2 (ENSPCTG00005014425) #10 OCM2 (ENSPCTG00005014893) #9 CCZ1 (ENSPCTG00005014972) #8 ENSPCTG00005015255 #7 PMS2 (ENSPCTG00005015618) AIMP2 (ENSPCTG00005015738) EIF2AK1 (ENSPCTG00005015824) ENSPCTG00005015924 USP42 (ENSPCTG00005016015) CYTH3 (ENSPCTG00005016072) Odontoceti_a DUPLICATION Odontoceti_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.b.a #21 Odontoceti_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.b.a #21 Monodontidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.b.a #21 Beluga whale MODERN SPECIES 71 PARP8 (ENSDLEG00000010187) ENSDLEG00000010254 EMB (ENSDLEG00000010268) HCN1 (ENSDLEG00000010295) MRPS30 (ENSDLEG00000010321) ENSDLEG00000010344 FGF10 (ENSDLEG00000010363) NNT (ENSDLEG00000010392) PAIP1 (ENSDLEG00000010481) ENSDLEG00000010795 TMEM267 (ENSDLEG00000010812) CCL28 (ENSDLEG00000010823) HMGCS1 (ENSDLEG00000010850) NIM1K (ENSDLEG00000010873) ZNF131 (ENSDLEG00000010883) ENSDLEG00000010960 #21 ENSDLEG00000010972 CCDC152 (ENSDLEG00000010980) GHR (ENSDLEG00000011057) ENSDLEG00000011077 FBXO4 (ENSDLEG00000011088) CUNH5orf51 (ENSDLEG00000011097) ENSDLEG00000011117 OXCT1 (ENSDLEG00000007932) ENSDLEG00000007959 PLCXD3 (ENSDLEG00000007969) ENSDLEG00000007976 C6 (ENSDLEG00000007985) ENSDLEG00000008015 ENSDLEG00000008047 C7 (ENSDLEG00000008142) Odontoceti_a ANCESTRAL SPECIES 3 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Dolphin MODERN SPECIES 2531 TRRAP (ENSTTRG00000002957) #18 ENSTTRG00000002991 SMURF1 (ENSTTRG00000002994) #19 KPNA7 (ENSTTRG00000002998) #20 ENSTTRG00000003000 ARPC1A (ENSTTRG00000003002) #21 ARPC1B (ENSTTRG00000003003) #22 PDAP1 (ENSTTRG00000003004) #23 BUD31 (ENSTTRG00000003005) #24 PTCD1 (ENSTTRG00000003006) CPSF4 (ENSTTRG00000003007) #26 ATP5MF (ENSTTRG00000003008) #27 Odontoceti_b ANCESTRAL SPECIES 3 ENSGT00940000154277.a.b.b.m.a.a.b ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Monodontidae ANCESTRAL SPECIES 1 ENSGT00940000154277.a.b.b.m.a.a.b ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.q.a.b.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 Narwhal MODERN SPECIES 299 ENSMMNG00015003915 ENSMMNG00015003873 #7 ENSMMNG00015003818 #8 ENSMMNG00015003789 #9 LMTK2 (ENSMMNG00015003763) #10 BHLHA15 (ENSMMNG00015003745) #11 TECPR1 (ENSMMNG00015003675) #12 BRI3 (ENSMMNG00015003639) #13 BAIAP2L1 (ENSMMNG00015003589) #14 NPTX2 (ENSMMNG00015003563) #16 TMEM130 (ENSMMNG00015003509) #17 TRRAP (ENSMMNG00015003087) #18 SMURF1 (ENSMMNG00015002854) #19 KPNA7 (ENSMMNG00015002759) #20 ENSMMNG00015002693 ENSMMNG00015002635 #21 ARPC1B (ENSMMNG00015002613) #22 PDAP1 (ENSMMNG00015002587) #23 BUD31 (ENSMMNG00015002560) #24 PTCD1 (ENSMMNG00015002519) CPSF4 (ENSMMNG00015002457) #26 ENSMMNG00015002418 #27 ZNF394 (ENSMMNG00015002396) #28 ZKSCAN5 (ENSMMNG00015002368) #30 ZNF789 (ENSMMNG00015002337) FAM200A (ENSMMNG00015002312) ZNF655 (ENSMMNG00015002264) #31 ENSMMNG00015002225 TMEM225B (ENSMMNG00015002205) ZSCAN25 (ENSMMNG00015002179) #32 ENSMMNG00015002160 Beluga whale MODERN SPECIES 48 ENSDLEG00000020484 ENSDLEG00000020481 ENSDLEG00000020475 #8 ENSDLEG00000020471 #9 LMTK2 (ENSDLEG00000020452) #10 BHLHA15 (ENSDLEG00000020448) #11 TECPR1 (ENSDLEG00000020413) #12 BRI3 (ENSDLEG00000020405) #13 BAIAP2L1 (ENSDLEG00000020393) #14 NPTX2 (ENSDLEG00000020388) #16 TMEM130 (ENSDLEG00000020386) #17 TRRAP (ENSDLEG00000016992) #18 SMURF1 (ENSDLEG00000016179) #19 KPNA7 (ENSDLEG00000016100) #20 ENSDLEG00000015938 ARPC1A (ENSDLEG00000015896) #21 ARPC1B (ENSDLEG00000015861) #22 PDAP1 (ENSDLEG00000015839) #23 BUD31 (ENSDLEG00000015820) #24 PTCD1 (ENSDLEG00000015782) CPSF4 (ENSDLEG00000015772) #26 ENSDLEG00000015761 #27 ZNF394 (ENSDLEG00000015750) #28 ZKSCAN5 (ENSDLEG00000015741) #30 ZNF789 (ENSDLEG00000015734) ZNF655 (ENSDLEG00000015709) #31 TMEM225B (ENSDLEG00000015693) ZSCAN25 (ENSDLEG00000015677) #32 ENSDLEG00000015665 #34 ENSDLEG00000015652 #34 ENSDLEG00000015622 #34 Vaquita MODERN SPECIES 6 ENSPSNG00000013383 ENSPSNG00000013097 #7 ENSPSNG00000012850 #8 ENSPSNG00000012777 #9 LMTK2 (ENSPSNG00000012631) #10 BHLHA15 (ENSPSNG00000012595) #11 TECPR1 (ENSPSNG00000012533) #12 ENSPSNG00000012465 #13 BAIAP2L1 (ENSPSNG00000012292) #14 NPTX2 (ENSPSNG00000012212) #16 TMEM130 (ENSPSNG00000011895) #17 TRRAP (ENSPSNG00000011688) #18 SMURF1 (ENSPSNG00000011505) #19 KPNA7 (ENSPSNG00000011346) #20 ENSPSNG00000010917 ENSPSNG00000010796 #21 ARPC1B (ENSPSNG00000010674) #22 PDAP1 (ENSPSNG00000010590) #23 BUD31 (ENSPSNG00000010482) #24 PTCD1 (ENSPSNG00000010406) CPSF4 (ENSPSNG00000010306) #26 ENSPSNG00000010232 #27 ZNF394 (ENSPSNG00000010193) #28 ZKSCAN5 (ENSPSNG00000010150) #30 ZNF789 (ENSPSNG00000010094) FAM200A (ENSPSNG00000010058) ZNF655 (ENSPSNG00000009816) #31 TMEM225B (ENSPSNG00000013751) ZSCAN25 (ENSPSNG00000013706) #32 ENSPSNG00000013187 #34 ENSPSNG00000012402 #34 Blue whale MODERN SPECIES 6 ENSBMSG00010016495 PMS2 (ENSBMSG00010016204) ENSBMSG00010016031 #8 ENSBMSG00010015991 #9 LMTK2 (ENSBMSG00010015958) #10 BHLHA15 (ENSBMSG00010015945) #11 TECPR1 (ENSBMSG00010015935) #12 ENSBMSG00010015916 BAIAP2L1 (ENSBMSG00010015891) #14 NPTX2 (ENSBMSG00010015873) #16 TMEM130 (ENSBMSG00010015649) #17 TRRAP (ENSBMSG00010014624) #18 SMURF1 (ENSBMSG00010014386) #19 KPNA7 (ENSBMSG00010014304) #20 ENSBMSG00010014169 ENSBMSG00010014113 #21 ARPC1B (ENSBMSG00010014056) #22 PDAP1 (ENSBMSG00010014018) #23 ENSBMSG00010013970 #24 PTCD1 (ENSBMSG00010013917) ENSBMSG00010012551 #26 ENSBMSG00010012514 #27 ENSBMSG00010012488 ZNF394 (ENSBMSG00010012476) #28 ZKSCAN5 (ENSBMSG00010012465) #30 ENSBMSG00010012445 FAM200A (ENSBMSG00010012436) ZNF655 (ENSBMSG00010012412) #31 TMEM225B (ENSBMSG00010012383) ZSCAN25 (ENSBMSG00010012378) #32 ENSBMSG00010012316 #34 Pecora DUPLICATION Pecora DUPLICATION Pecora DUPLICATION Pecora ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.a.a #21 Percora_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.a.a #21 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 428 ENSMMSG00000018911 #21 Siberian musk deer MODERN SPECIES 397 ENSMMSG00000018469 #21 Yarkand deer MODERN SPECIES 1323 POLA1 (ENSCHYG00000019524) ENSCHYG00000019382 MAGEB18 (ENSCHYG00000019310) ENSCHYG00000019249 ENSCHYG00000019208 ENSCHYG00000019135 ENSCHYG00000019103 ENSCHYG00000019078 ENSCHYG00000018962 PPP4R3C (ENSCHYG00000018927) ENSCHYG00000018901 ENSCHYG00000018884 ENSCHYG00000018734 ENSCHYG00000018685 ENSCHYG00000018596 ENSCHYG00000018456 #21 ENSCHYG00000018292 IL1RAPL1 (ENSCHYG00000018100) ENSCHYG00000018076 ENSCHYG00000017970 ENSCHYG00000017951 ENSCHYG00000017897 ENSCHYG00000017868 ENSCHYG00000017854 ENSCHYG00000017837 NR0B1 (ENSCHYG00000017774) TASL (ENSCHYG00000017678) ENSCHYG00000017279 TAB3 (ENSCHYG00000017183) ENSCHYG00000017141 DMD (ENSCHYG00000025075) Pecora ANCESTRAL SPECIES 10 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200.a Percora_a ANCESTRAL SPECIES 9 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200.a Bovidae ANCESTRAL SPECIES 11 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200.a Caprinae DUPLICATION Caprinae DUPLICATION Caprinae DUPLICATION Caprinae ANCESTRAL SPECIES 7 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b.a.a.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.y #27 ENSGT00940000154488.A.b.a.b ENSGT00510000046986.x.a.d #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00760000119441 #31 ENSGT00940000153104.f ENSGT00510000055200.a ENSGT00940000162113 #32 Rambouillet Sheep MODERN SPECIES 16 EIF2AK1 (ENSOARG00020023922) AIMP2 (ENSOARG00020023890) PMS2 (ENSOARG00020023689) ENSOARG00020023637 #7 ENSOARG00020023544 #8 ENSOARG00020023523 #9 BHLHA15 (ENSOARG00020023426) #11 TECPR1 (ENSOARG00020023364) #12 BRI3 (ENSOARG00020023331) #13 BAIAP2L1 (ENSOARG00020023297) #14 NPTX2 (ENSOARG00020023277) #16 TMEM130 (ENSOARG00020023081) #17 TRRAP (ENSOARG00020022843) #18 SMURF1 (ENSOARG00020022545) #19 KPNA7 (ENSOARG00020022480) #20 ENSOARG00020022442 #21 ARPC1B (ENSOARG00020022406) #22 PDAP1 (ENSOARG00020022360) #23 BUD31 (ENSOARG00020022312) #24 CPSF4 (ENSOARG00020022199) #26 ENSOARG00020022141 #27 ZNF394 (ENSOARG00020022119) #28 ZKSCAN5 (ENSOARG00020022085) #30 ZNF789 (ENSOARG00020022053) ZNF655 (ENSOARG00020021933) #31 TMEM225B (ENSOARG00020021911) ZSCAN25 (ENSOARG00020021884) #32 ENSOARG00020021858 CYP3A24 (ENSOARG00020021603) #34 ENSOARG00020021338 #34 ENSOARG00020021224 #34 Goat MODERN SPECIES 17 AIMP2 (ENSCHIG00000014822) PMS2 (ENSCHIG00000017062) ENSCHIG00000021579 #7 ENSCHIG00000016566 #8 ENSCHIG00000026637 #9 LMTK2 (ENSCHIG00000023995) #10 BHLHA15 (ENSCHIG00000008225) #11 TECPR1 (ENSCHIG00000025300) #12 BRI3 (ENSCHIG00000005545) #13 BAIAP2L1 (ENSCHIG00000003641) #14 NPTX2 (ENSCHIG00000016145) #16 TMEM130 (ENSCHIG00000025196) #17 TRRAP (ENSCHIG00000025236) #18 SMURF1 (ENSCHIG00000017881) #19 KPNA7 (ENSCHIG00000026332) #20 ENSCHIG00000013674 #21 ARPC1B (ENSCHIG00000021068) #22 PDAP1 (ENSCHIG00000024190) #23 BUD31 (ENSCHIG00000015455) #24 PTCD1 (ENSCHIG00000027000) CPSF4 (ENSCHIG00000014313) #26 ENSCHIG00000021771 #27 ENSCHIG00000005075 ZNF394 (ENSCHIG00000016834) #28 ZKSCAN5 (ENSCHIG00000024258) #30 ZNF789 (ENSCHIG00000013695) ZNF655 (ENSCHIG00000025621) #31 ENSCHIG00000023445 TMEM225B (ENSCHIG00000014873) ZSCAN25 (ENSCHIG00000023626) #32 CYP3A24 (ENSCHIG00000012426) #34 Caprinae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.a.b.a.a.b #21 Rambouillet Sheep MODERN SPECIES 18 ENSOARG00020021090 ZNF385D (ENSOARG00020021008) ENSOARG00020020982 ENSOARG00020020961 ENSOARG00020020552 NKIRAS1 (ENSOARG00020020315) ENSOARG00020020301 NR1D2 (ENSOARG00020020196) ENSOARG00020020163 THRB (ENSOARG00020019917) ENSOARG00020019867 RARB (ENSOARG00020019726) TOP2B (ENSOARG00020017639) ENSOARG00020017534 #21 NGLY1 (ENSOARG00020017155) OXSM (ENSOARG00020017097) ENSOARG00020017068 LRRC3B (ENSOARG00020017045) ENSOARG00020016997 PSD3 (ENSOARG00020015217) ENSOARG00020025759 CSGALNACT1 (ENSOARG00020025733) INTS10 (ENSOARG00020025726) HGSNAT (ENSOARG00020025720) POMK (ENSOARG00020025715) FNTA (ENSOARG00020025711) HOOK3 (ENSOARG00020025699) RNF170 (ENSOARG00020025696) THAP1 (ENSOARG00020025693) Caprinae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.a.b.a.b #21 Goat DUPLICATION Goat MODERN SPECIES 9 ENSCHIG00000000686 ENSCHIG00000008352 PRKCG (ENSCHIG00000023927) CACNG7 (ENSCHIG00000017646) CACNG8 (ENSCHIG00000019368) CACNG6 (ENSCHIG00000007908) NLRP9 (ENSCHIG00000024985) EPN1 (ENSCHIG00000012075) U2AF2 (ENSCHIG00000023595) CCDC106 (ENSCHIG00000011786) ZNF581 (ENSCHIG00000012084) ZNF865 (ENSCHIG00000012252) ZNF784 (ENSCHIG00000023200) ZNF524 (ENSCHIG00000011074) ZNF579 (ENSCHIG00000023249) ENSCHIG00000014120 #21 SBK3 (ENSCHIG00000023243) SBK2 (ENSCHIG00000013269) SSC5D (ENSCHIG00000025733) NAT14 (ENSCHIG00000010342) ZNF628 (ENSCHIG00000022075) ISOC2 (ENSCHIG00000024639) SHISA7 (ENSCHIG00000013707) UBE2S (ENSCHIG00000025320) ENSCHIG00000025540 TMEM238 (ENSCHIG00000010886) TMEM190 (ENSCHIG00000025879) IL11 (ENSCHIG00000017180) ENSCHIG00000017031 COX6B2 (ENSCHIG00000019110) KMT5C (ENSCHIG00000009854) Goat MODERN SPECIES 19 ZNF385D (ENSCHIG00000019119) ENSCHIG00000017721 UBE2E2 (ENSCHIG00000025159) UBE2E1 (ENSCHIG00000023454) NKIRAS1 (ENSCHIG00000012221) ENSCHIG00000014599 NR1D2 (ENSCHIG00000013761) THRB (ENSCHIG00000022036) RARB (ENSCHIG00000011887) TOP2B (ENSCHIG00000021091) NGLY1 (ENSCHIG00000027026) ENSCHIG00000009722 #21 OXSM (ENSCHIG00000021539) LRRC3B (ENSCHIG00000011441) ENSCHIG00000011996 PSD3 (ENSCHIG00000022134) SH2D4A (ENSCHIG00000018803) CSGALNACT1 (ENSCHIG00000024893) INTS10 (ENSCHIG00000000076) HGSNAT (ENSCHIG00000000180) POMK (ENSCHIG00000011543) ENSCHIG00000011734 HOOK3 (ENSCHIG00000016259) ENSCHIG00000018508 RNF170 (ENSCHIG00000017142) THAP1 (ENSCHIG00000012480) CHRNA6 (ENSCHIG00000024125) Rambouillet Sheep MODERN SPECIES 20 PPP1R3A (ENSOARG00020001807) FOXP2 (ENSOARG00020001223) MDFIC (ENSOARG00020001137) TFEC (ENSOARG00020001041) TES (ENSOARG00020000994) CAV2 (ENSOARG00020000978) CAV1 (ENSOARG00020000956) MET (ENSOARG00020000868) ENSOARG00020000812 ST7 (ENSOARG00020000287) WNT2 (ENSOARG00020000160) ASZ1 (ENSOARG00020000134) CFTR (ENSOARG00020016363) CTTNBP2 (ENSOARG00020016233) ENSOARG00020016185 ENSOARG00020016145 #21 ENSOARG00020016114 ENSOARG00020016083 ENSOARG00020016021 STARD3NL (ENSOARG00020015943) EPDR1 (ENSOARG00020015795) SFRP4 (ENSOARG00020015741) NME8 (ENSOARG00020015579) ENSOARG00020015549 PNPLA8 (ENSOARG00020015435) NRCAM (ENSOARG00020014477) ENSOARG00020014254 LAMB1 (ENSOARG00020013761) DLD (ENSOARG00020013466) SLC26A3 (ENSOARG00020013060) CBLL1 (ENSOARG00020012962) Caprinae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.a.b.b #21 Goat MODERN SPECIES 23 AEBP1 (ENSCHIG00000019312) POLM (ENSCHIG00000022903) ENSCHIG00000019345 COA1 (ENSCHIG00000025366) STK17A (ENSCHIG00000012894) ENSCHIG00000022757 HECW1 (ENSCHIG00000018639) MRPL32 (ENSCHIG00000026167) ENSCHIG00000012524 C7orf25 (ENSCHIG00000009068) ENSCHIG00000012804 GLI3 (ENSCHIG00000015297) INHBA (ENSCHIG00000025901) SUGCT (ENSCHIG00000017599) MPLKIP (ENSCHIG00000021871) ENSCHIG00000022322 #21 CDK13 (ENSCHIG00000022113) RALA (ENSCHIG00000013549) YAE1 (ENSCHIG00000016002) ENSCHIG00000016882 ENSCHIG00000020600 VPS41 (ENSCHIG00000005959) ENSCHIG00000011903 AMPH (ENSCHIG00000020495) ENSCHIG00000013794 ENSCHIG00000018076 ENSCHIG00000007301 LSM8 (ENSCHIG00000014201) ENSCHIG00000022010 KCND2 (ENSCHIG00000017913) ENSCHIG00000025503 Bovinae ANCESTRAL SPECIES 7 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a ENSGT00940000162113 #32 Bos ANCESTRAL SPECIES 9 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a Bos_b ANCESTRAL SPECIES 6 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.a.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a ENSGT00940000162113 #32 Cow MODERN SPECIES 17 AIMP2 (ENSBTAG00000007367) PMS2 (ENSBTAG00000007364) RSPH10B (ENSBTAG00000005908) #7 CCZ1 (ENSBTAG00000003288) #8 ENSBTAG00000046943 #9 LMTK2 (ENSBTAG00000004135) #10 BHLHA15 (ENSBTAG00000046010) #11 TECPR1 (ENSBTAG00000051678) #12 BRI3 (ENSBTAG00000022825) #13 BAIAP2L1 (ENSBTAG00000019181) #14 NPTX2 (ENSBTAG00000045896) #16 TMEM130 (ENSBTAG00000005679) #17 TRRAP (ENSBTAG00000007113) #18 SMURF1 (ENSBTAG00000007118) #19 KPNA7 (ENSBTAG00000015737) #20 ARPC1A (ENSBTAG00000004242) #21 ARPC1B (ENSBTAG00000046248) #22 PDAP1 (ENSBTAG00000044040) #23 BUD31 (ENSBTAG00000020439) #24 PTCD1 (ENSBTAG00000020440) CPSF4 (ENSBTAG00000002090) #26 ATP5MF (ENSBTAG00000002094) #27 ZNF394 (ENSBTAG00000016190) #28 ENSBTAG00000053161 ZKSCAN5 (ENSBTAG00000049731) #30 ENSBTAG00000048341 ZNF789 (ENSBTAG00000047572) FAM200A (ENSBTAG00000051481) ZNF655 (ENSBTAG00000030951) #31 TMEM225B (ENSBTAG00000039720) ZSCAN25 (ENSBTAG00000039512) #32 Hybrid Bos Indicus MODERN SPECIES 17 AIMP2 (ENSBIXG00005015986) PMS2 (ENSBIXG00005002516) ENSBIXG00005015885 #7 ENSBIXG00005015615 #8 ENSBIXG00005015523 #9 LMTK2 (ENSBIXG00005002294) #10 BAIAP2L1 (ENSBIXG00005015423) #14 BHLHA15 (ENSBIXG00005015363) #11 TECPR1 (ENSBIXG00005015345) #12 BRI3 (ENSBIXG00005015306) #13 NPTX2 (ENSBIXG00005015270) #16 TMEM130 (ENSBIXG00005015225) #17 TRRAP (ENSBIXG00005015045) #18 SMURF1 (ENSBIXG00005005409) #19 KPNA7 (ENSBIXG00005014735) #20 ENSBIXG00005002057 #21 ENSBIXG00005014625 #22 PDAP1 (ENSBIXG00005014563) #23 BUD31 (ENSBIXG00005014534) #24 PTCD1 (ENSBIXG00005014503) CPSF4 (ENSBIXG00005014471) #26 ENSBIXG00005014397 #27 ENSBIXG00005014375 ENSBIXG00005001905 ENSBIXG00005014311 ZKSCAN5 (ENSBIXG00005001885) #30 ENSBIXG00005014283 ZNF789 (ENSBIXG00005014273) FAM200A (ENSBIXG00005014258) ZNF655 (ENSBIXG00005014236) #31 ENSBIXG00005014180 American bison MODERN SPECIES 3140 AIMP2 (ENSBBBG00000010040) PMS2 (ENSBBBG00000001701) ENSBBBG00000006928 #7 ENSBBBG00000010103 #8 ENSBBBG00000010109 #9 LMTK2 (ENSBBBG00000010132) #10 BHLHA15 (ENSBBBG00000010137) #11 BRI3 (ENSBBBG00000010143) #13 ENSBBBG00000001713 BAIAP2L1 (ENSBBBG00000010154) #14 NPTX2 (ENSBBBG00000001718) #16 TMEM130 (ENSBBBG00000010173) #17 TRRAP (ENSBBBG00000000060) #18 SMURF1 (ENSBBBG00000010293) #19 KPNA7 (ENSBBBG00000001770) #20 ENSBBBG00000008539 #21 ENSBBBG00000010343 #22 PDAP1 (ENSBBBG00000010357) #23 BUD31 (ENSBBBG00000010369) #24 PTCD1 (ENSBBBG00000010388) CPSF4 (ENSBBBG00000010423) #26 ENSBBBG00000010437 #27 ZNF394 (ENSBBBG00000010440) #28 ZKSCAN5 (ENSBBBG00000001814) #30 ZNF789 (ENSBBBG00000010449) ZNF655 (ENSBBBG00000010475) #31 ENSBBBG00000001826 ZSCAN25 (ENSBBBG00000010489) #32 ENSBBBG00000001832 ENSBBBG00000010568 #34 ENSBBBG00000007021 #34 Siberian musk deer MODERN SPECIES 1230 PMS2 (ENSMMSG00000015622) ENSMMSG00000015595 ENSMMSG00000015506 #7 ENSMMSG00000015402 #8 ENSMMSG00000015375 #9 LMTK2 (ENSMMSG00000015302) #10 BHLHA15 (ENSMMSG00000015278) #11 TECPR1 (ENSMMSG00000015173) #12 BRI3 (ENSMMSG00000015142) #13 BAIAP2L1 (ENSMMSG00000015095) #14 NPTX2 (ENSMMSG00000015078) #16 TMEM130 (ENSMMSG00000015018) #17 TRRAP (ENSMMSG00000014927) #18 SMURF1 (ENSMMSG00000014815) #19 ENSMMSG00000014765 #20 ENSMMSG00000014733 #21 ARPC1B (ENSMMSG00000014707) #22 PDAP1 (ENSMMSG00000014684) #23 BUD31 (ENSMMSG00000014656) #24 PTCD1 (ENSMMSG00000014637) CPSF4 (ENSMMSG00000014539) #26 ENSMMSG00000014510 #27 ZNF394 (ENSMMSG00000014499) #28 ZKSCAN5 (ENSMMSG00000014471) #30 ZNF789 (ENSMMSG00000014456) ZNF655 (ENSMMSG00000014427) #31 TMEM225B (ENSMMSG00000014403) ZSCAN25 (ENSMMSG00000014381) #32 ENSMMSG00000014367 ENSMMSG00000014350 ENSMMSG00000014257 #34 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 1284 ENSCHYG00000022204 #21 Yarkand deer MODERN SPECIES 1 AIMP2 (ENSCHYG00000018933) PMS2 (ENSCHYG00000018507) ENSCHYG00000018095 #7 ENSCHYG00000017835 #8 ENSCHYG00000017762 #9 LMTK2 (ENSCHYG00000017591) #10 BHLHA15 (ENSCHYG00000017555) #11 TECPR1 (ENSCHYG00000017360) #12 BRI3 (ENSCHYG00000017314) #13 BAIAP2L1 (ENSCHYG00000017061) #14 NPTX2 (ENSCHYG00000016997) #16 TMEM130 (ENSCHYG00000016668) #17 TRRAP (ENSCHYG00000013971) #18 SMURF1 (ENSCHYG00000013359) #19 KPNA7 (ENSCHYG00000013180) #20 ENSCHYG00000013066 #21 ARPC1B (ENSCHYG00000012964) #22 PDAP1 (ENSCHYG00000012875) #23 BUD31 (ENSCHYG00000012781) #24 PTCD1 (ENSCHYG00000012720) CPSF4 (ENSCHYG00000012568) #26 ENSCHYG00000012401 #27 ENSCHYG00000012361 ZNF394 (ENSCHYG00000012317) #28 ZKSCAN5 (ENSCHYG00000012276) #30 ENSCHYG00000012259 ZNF789 (ENSCHYG00000012222) ZNF655 (ENSCHYG00000012070) #31 ENSCHYG00000012030 TMEM225B (ENSCHYG00000011916) ZSCAN25 (ENSCHYG00000011869) #32 Pecora ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.b #21 Percora_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.b #21 Bovidae ANCESTRAL SPECIES 18 ENSGT01030000234633.C.b ENSGT00940000153912.B ENSGT00530000064550.A ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00390000018596.B.b ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000161376 ENSGT00950000183183.b.a.q.a.c.b #21 ENSGT00940000154194 ENSGT00940000158205 ENSGT00940000155196 ENSGT00940000162645 ENSGT00390000016927.i.a.a.b ENSGT00940000163645 ENSGT00940000162845 ENSGT00940000155234.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 ENSGT00390000013159 Bovinae ANCESTRAL SPECIES 15 ENSGT01030000234633.C.b ENSGT00940000153912.B ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00940000161841.i.b.a ENSGT00390000018596.B.b ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000161376 ENSGT00950000183183.b.a.q.a.c.b #21 ENSGT00940000154194 ENSGT00950000182891.a.a.b.a.b.a.m.a.b ENSGT00940000158205 ENSGT00940000155196 ENSGT00960000190398 ENSGT00940000162645 ENSGT00390000016927.i.a.a.b ENSGT00940000163645 ENSGT00940000162845 ENSGT00940000155234.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a ENSGT00390000011412 ENSGT00730000111645 Bos DUPLICATION Bos ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.c.b.a #21 Bos_a ANCESTRAL SPECIES 35 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.b.a #21 ENSGT00950000183183.b.a.q.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 Wild yak MODERN SPECIES 1481 PMS2 (ENSBMUG00000014299) ENSBMUG00000014408 #7 ENSBMUG00000014499 #8 ENSBMUG00000014511 ENSBMUG00000014529 #9 LMTK2 (ENSBMUG00000014553) #10 BHLHA15 (ENSBMUG00000014568) #11 TECPR1 (ENSBMUG00000014611) #12 BRI3 (ENSBMUG00000014621) #13 BAIAP2L1 (ENSBMUG00000014648) #14 NPTX2 (ENSBMUG00000014653) #16 TMEM130 (ENSBMUG00000014663) #17 TRRAP (ENSBMUG00000014924) #18 SMURF1 (ENSBMUG00000015064) #19 KPNA7 (ENSBMUG00000015095) #20 ENSBMUG00000015109 #21 Domestic yak MODERN SPECIES 18 PMS2 (ENSBGRG00000025668) ENSBGRG00000025625 #7 ENSBGRG00000025431 #8 ENSBGRG00000025381 #9 LMTK2 (ENSBGRG00000025270) #10 BHLHA15 (ENSBGRG00000025237) #11 TECPR1 (ENSBGRG00000025127) #12 BRI3 (ENSBGRG00000025097) #13 BAIAP2L1 (ENSBGRG00000025058) #14 NPTX2 (ENSBGRG00000025022) #16 TMEM130 (ENSBGRG00000024946) #17 TRRAP (ENSBGRG00000024841) #18 ENSBGRG00000024800 SMURF1 (ENSBGRG00000024646) #19 KPNA7 (ENSBGRG00000024547) #20 ENSBGRG00000024515 #21 ENSBGRG00000024499 #21 ENSBGRG00000024483 #22 PDAP1 (ENSBGRG00000024415) #23 BUD31 (ENSBGRG00000024361) #24 PTCD1 (ENSBGRG00000024303) CPSF4 (ENSBGRG00000024142) #26 ENSBGRG00000024105 #27 ENSBGRG00000024073 ENSBGRG00000024059 ZNF394 (ENSBGRG00000024040) #28 ZKSCAN5 (ENSBGRG00000024023) #30 ENSBGRG00000024016 ZNF789 (ENSBGRG00000023983) FAM200A (ENSBGRG00000023967) ZNF655 (ENSBGRG00000023838) #31 Bos_b ANCESTRAL SPECIES 14 ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.b.b.b.a.b.a.a.b.a.a.a ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00940000161841.i.b.a ENSGT00390000018596.B.b ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000161376 ENSGT00940000153362.a.cb.a.a.a ENSGT00950000183183.b.a.q.a.c.b.a #21 ENSGT00940000154194 ENSGT00950000182891.a.a.b.a.b.a.m.a.b ENSGT00940000158205 ENSGT00940000155196 ENSGT00960000190398 ENSGT00940000162645 ENSGT00390000016927.i.a.a.b ENSGT00940000163645 ENSGT00940000162845 ENSGT00940000155234.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a ENSGT00390000011412 ENSGT00730000111645 Hybrid Bos Indicus MODERN SPECIES 25 HPGDS (ENSBIXG00005019143) PDLIM5 (ENSBIXG00005019427) ENSBIXG00005019501 ENSBIXG00005019512 BMPR1B (ENSBIXG00005019716) ENSBIXG00005005526 UNC5C (ENSBIXG00005019951) PDHA2 (ENSBIXG00005006818) ENSBIXG00005020010 ENSBIXG00005020038 ENSBIXG00005003297 STPG2 (ENSBIXG00005020087) RAP1GDS1 (ENSBIXG00005020210) ENSBIXG00005003369 TSPAN5 (ENSBIXG00005020262) ENSBIXG00005020276 #21 EIF4E (ENSBIXG00005020322) ENSBIXG00005005594 ADH5 (ENSBIXG00005020398) ENSBIXG00005020447 ADH6 (ENSBIXG00005020520) METAP1 (ENSBIXG00005020582) ENSBIXG00005003522 ADH7 (ENSBIXG00005005993) C4orf17 (ENSBIXG00005021093) TRMT10A (ENSBIXG00005021122) MTTP (ENSBIXG00005021189) C4orf54 (ENSBIXG00005005747) DAPP1 (ENSBIXG00005021282) LAMTOR3 (ENSBIXG00005021344) DNAJB14 (ENSBIXG00005003609) Bos ANCESTRAL SPECIES 15 ENSGT00530000064550.A ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00940000161841.i.b.a ENSGT00390000018596.B.b ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000161376 ENSGT00940000153362.a.cb.a.a.a ENSGT00950000183183.b.a.q.a.c.b.b #21 ENSGT00940000154194 ENSGT00950000182891.a.a.b.a.b.a.m.a.b ENSGT00940000158205 ENSGT00940000155196 ENSGT00960000190398 ENSGT00940000162645 ENSGT00390000016927.i.a.a.b ENSGT00940000163645 ENSGT00940000162845 ENSGT00940000155234.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a ENSGT00390000011412 ENSGT00730000111645 Bos_a ANCESTRAL SPECIES 33 ENSGT01030000234633.C.b ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.a.a.a.a.b.b ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00940000161841.i.b.a ENSGT00390000018596.B.b ENSGT00390000014293.a ENSGT00940000161376 ENSGT00940000153362.a.cb.a.a.a ENSGT00950000183183.b.a.q.a.c.b.b #21 ENSGT00940000154194 ENSGT00950000182891.a.a.b.a.b.a.m.a.b ENSGT00940000158205 ENSGT00940000155196 ENSGT00940000162645 ENSGT00940000163645 ENSGT00940000162845 ENSGT00940000155234.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 ENSGT00390000013159 Domestic yak MODERN SPECIES 25 ATOH1 (ENSBGRG00000023717) SMARCAD1 (ENSBGRG00000023737) HPGDS (ENSBGRG00000000303) PDLIM5 (ENSBGRG00000000397) ENSBGRG00000000612 ENSBGRG00000000618 BMPR1B (ENSBGRG00000000658) UNC5C (ENSBGRG00000000763) PDHA2 (ENSBGRG00000000876) ENSBGRG00000000891 STPG2 (ENSBGRG00000000913) ENSBGRG00000000988 RAP1GDS1 (ENSBGRG00000001075) TSPAN5 (ENSBGRG00000001483) ENSBGRG00000001534 ENSBGRG00000001557 #21 EIF4E (ENSBGRG00000001581) ENSBGRG00000001626 METAP1 (ENSBGRG00000001645) ADH5 (ENSBGRG00000001695) ADH4 (ENSBGRG00000001793) ADH6 (ENSBGRG00000001847) ENSBGRG00000001962 ENSBGRG00000001971 ENSBGRG00000002006 C4orf17 (ENSBGRG00000002084) ADH7 (ENSBGRG00000002104) TRMT10A (ENSBGRG00000002151) MTTP (ENSBGRG00000002196) DAPP1 (ENSBGRG00000002376) LAMTOR3 (ENSBGRG00000002446) American bison MODERN SPECIES 3179 SMARCAD1 (ENSBBBG00000021403) HPGDS (ENSBBBG00000005710) PDLIM5 (ENSBBBG00000021614) ENSBBBG00000021647 BMPR1B (ENSBBBG00000021707) UNC5C (ENSBBBG00000021798) PDHA2 (ENSBBBG00000021816) ENSBBBG00000021827 ENSBBBG00000021839 ENSBBBG00000021848 RAP1GDS1 (ENSBBBG00000022062) TSPAN5 (ENSBBBG00000005833) ENSBBBG00000022107 ENSBBBG00000022115 #21 EIF4E (ENSBBBG00000005843) ENSBBBG00000022134 METAP1 (ENSBBBG00000022151) ADH5 (ENSBBBG00000022169) ENSBBBG00000022176 ADH4 (ENSBBBG00000022206) ENSBBBG00000022216 ADH6 (ENSBBBG00000007283) ENSBBBG00000005881 ENSBBBG00000022361 ADH7 (ENSBBBG00000005915) C4orf17 (ENSBBBG00000022450) TRMT10A (ENSBBBG00000022485) MTTP (ENSBBBG00000022532) C4orf54 (ENSBBBG00000005948) Caprinae ANCESTRAL SPECIES 13 ENSGT01030000234633.C.b ENSGT00940000153912.B ENSGT00530000064550.A ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00390000018596.B.b ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000161376 ENSGT00950000183183.b.a.q.a.c.b #21 ENSGT00940000154194 ENSGT00950000182891.a.a.b.a.b.b.b.d.a ENSGT00940000158205 ENSGT00940000155196 ENSGT00940000162645.b ENSGT00390000016927.i.a.a.b.a ENSGT00940000163645 ENSGT00940000162645.a ENSGT00390000016927.i.a.a.b.b ENSGT00940000162845 ENSGT00940000155234.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a ENSGT00390000011412 Goat MODERN SPECIES 25 CCSER1 (ENSCHIG00000019553) ENSCHIG00000000698 GRID2 (ENSCHIG00000020528) ATOH1 (ENSCHIG00000011106) ENSCHIG00000014271 SMARCAD1 (ENSCHIG00000012905) HPGDS (ENSCHIG00000022190) PDLIM5 (ENSCHIG00000008891) BMPR1B (ENSCHIG00000017761) UNC5C (ENSCHIG00000007694) PDHA2 (ENSCHIG00000008223) ENSCHIG00000013187 STPG2 (ENSCHIG00000014643) RAP1GDS1 (ENSCHIG00000013239) TSPAN5 (ENSCHIG00000022359) ENSCHIG00000016049 #21 EIF4E (ENSCHIG00000009550) ENSCHIG00000009913 METAP1 (ENSCHIG00000022024) ADH5 (ENSCHIG00000025518) ENSCHIG00000025317 ENSCHIG00000025086 ENSCHIG00000024279 ENSCHIG00000012239 ENSCHIG00000025566 ENSCHIG00000020284 ENSCHIG00000011302 ENSCHIG00000015989 ADH7 (ENSCHIG00000016676) C4orf17 (ENSCHIG00000014611) TRMT10A (ENSCHIG00000025147) Yarkand deer MODERN SPECIES 8 SNCA (ENSCHYG00000013101) MMRN1 (ENSCHYG00000013009) CCSER1 (ENSCHYG00000012836) GRID2 (ENSCHYG00000012507) ATOH1 (ENSCHYG00000012447) SMARCAD1 (ENSCHYG00000012370) HPGDS (ENSCHYG00000012305) PDLIM5 (ENSCHYG00000011689) BMPR1B (ENSCHYG00000011513) UNC5C (ENSCHYG00000011195) PDHA2 (ENSCHYG00000011151) ENSCHYG00000011128 STPG2 (ENSCHYG00000011023) RAP1GDS1 (ENSCHYG00000009459) TSPAN5 (ENSCHYG00000009162) ENSCHYG00000009101 #21 ENSCHYG00000009081 ENSCHYG00000009041 ENSCHYG00000008899 METAP1 (ENSCHYG00000008757) ENSCHYG00000008689 ADH4 (ENSCHYG00000008600) ADH6 (ENSCHYG00000008516) ENSCHYG00000008471 ENSCHYG00000008395 C4orf17 (ENSCHYG00000008205) TRMT10A (ENSCHYG00000008171) MTTP (ENSCHYG00000008075) C4orf54 (ENSCHYG00000008042) DAPP1 (ENSCHYG00000008000) LAMTOR3 (ENSCHYG00000007897) Pecora ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.d #21 Percora_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.d #21 Bovidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.d #21 Bovinae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.d #21 Bos ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.d #21 Bos_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.a.d #21 Cow MODERN SPECIES 26 VCAN (ENSBTAG00000014906) HAPLN1 (ENSBTAG00000012411) EDIL3 (ENSBTAG00000044033) ENSBTAG00000039555 ENSBTAG00000037434 RASA1 (ENSBTAG00000009565) ENSBTAG00000039523 CCNH (ENSBTAG00000009566) ENSBTAG00000022762 TMEM161B (ENSBTAG00000008484) ENSBTAG00000050008 MEF2C (ENSBTAG00000020701) ENSBTAG00000003258 ENSBTAG00000050847 CETN3 (ENSBTAG00000014373) ENSBTAG00000049440 #21 MBLAC2 (ENSBTAG00000013612) POLR3G (ENSBTAG00000044077) LYSMD3 (ENSBTAG00000027713) ADGRV1 (ENSBTAG00000006031) ARRDC3 (ENSBTAG00000007116) NR2F1 (ENSBTAG00000017599) FAM172A (ENSBTAG00000050195) KIAA0825 (ENSBTAG00000003144) SLF1 (ENSBTAG00000006107) MCTP1 (ENSBTAG00000054976) FAM81B (ENSBTAG00000019287) SKIC3 (ENSBTAG00000009131) ENSBTAG00000053404 ARSK (ENSBTAG00000020178) RFESD (ENSBTAG00000036242) American bison MODERN SPECIES 3376 ENSBBBG00000011455 ENSBBBG00000011444 RASA1 (ENSBBBG00000009045) ENSBBBG00000011354 ENSBBBG00000011338 TMEM161B (ENSBBBG00000011329) ENSBBBG00000011292 MEF2C (ENSBBBG00000011258) ENSBBBG00000023857 CETN3 (ENSBBBG00000023843) ENSBBBG00000023818 #21 MBLAC2 (ENSBBBG00000023810) ENSBBBG00000023804 LYSMD3 (ENSBBBG00000006198) ADGRV1 (ENSBBBG00000006195) ARRDC3 (ENSBBBG00000023568) NR2F1 (ENSBBBG00000023546) FAM172A (ENSBBBG00000023483) KIAA0825 (ENSBBBG00000023466) SLF1 (ENSBBBG00000023440) MCTP1 (ENSBBBG00000023391) FAM81B (ENSBBBG00000000321) SKIC3 (ENSBBBG00000000349) ARSK (ENSBBBG00000000459) RFESD (ENSBBBG00000000480) SPATA9 (ENSBBBG00000000483) Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Cetacea ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Odontoceti ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Sperm whale MODERN SPECIES 12 EGLN1 (ENSPCTG00005011619) SPRTN (ENSPCTG00005011531) EXOC8 (ENSPCTG00005011506) GNPAT (ENSPCTG00005011450) C1orf131 (ENSPCTG00005011342) TRIM67 (ENSPCTG00005011115) FAM89A (ENSPCTG00005011074) ARV1 (ENSPCTG00005010988) TTC13 (ENSPCTG00005010546) C20H1orf198 (ENSPCTG00005010444) ENSPCTG00005010277 AGT (ENSPCTG00005010165) COG2 (ENSPCTG00005010066) PGBD5 (ENSPCTG00005009891) GALNT2 (ENSPCTG00005016676) ENSPCTG00005016637 #21 URB2 (ENSPCTG00005016547) TAF5L (ENSPCTG00005016481) ABCB10 (ENSPCTG00005016326) NUP133 (ENSPCTG00005016132) ACTA1 (ENSPCTG00005016061) CCSAP (ENSPCTG00005016016) RAB4A (ENSPCTG00005015948) RHOU (ENSPCTG00005015892) ENSPCTG00005015859 ENSPCTG00005015697 Blue whale MODERN SPECIES 11 KIAA0586 (ENSBMSG00010006894) TIMM9 (ENSBMSG00010006673) TOMM20L (ENSBMSG00010006639) ARID4A (ENSBMSG00010006597) PSMA3 (ENSBMSG00010006547) ACTR10 (ENSBMSG00010006532) ARMH4 (ENSBMSG00010006512) SLC35F4 (ENSBMSG00010006486) CCDC198 (ENSBMSG00010006460) NAA30 (ENSBMSG00010006423) EXOC5 (ENSBMSG00010006288) ENSBMSG00010006244 TMEM260 (ENSBMSG00010006197) PELI2 (ENSBMSG00010006118) ENSBMSG00010006103 ENSBMSG00010006087 #21 KTN1 (ENSBMSG00010005998) TBPL2 (ENSBMSG00010005889) ATG14 (ENSBMSG00010005829) FBXO34 (ENSBMSG00010005804) ENSBMSG00010005771 LGALS3 (ENSBMSG00010005740) ENSBMSG00010005724 MAPK1IP1L (ENSBMSG00010005701) SOCS4 (ENSBMSG00010005678) WDHD1 (ENSBMSG00010005666) GCH1 (ENSBMSG00010005645) SAMD4A (ENSBMSG00010005603) CGRRF1 (ENSBMSG00010005565) ENSBMSG00010005542 CNIH1 (ENSBMSG00010005508) Pecora ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Percora_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Bovidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Bovinae ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Bos ANCESTRAL SPECIES ENSGT00950000183183.b.a.q.b #21 Bos_a ANCESTRAL SPECIES 35 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a.q.a.c.b.a #21 ENSGT00950000183183.b.a.q.b #21 ENSGT00950000183183.b.b.m #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.x.a.d #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000154740.a.a.c.b ENSGT00940000162299 #30 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b ENSGT00940000163495 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200.a Wild yak MODERN SPECIES 538 ENSBMUG00000023044 #21 ENSBMUG00000023068 #22 PDAP1 (ENSBMUG00000023105) #23 BUD31 (ENSBMUG00000023129) #24 PTCD1 (ENSBMUG00000023153) CPSF4 (ENSBMUG00000023198) #26 ENSBMUG00000023216 #27 ENSBMUG00000023229 ZNF394 (ENSBMUG00000023235) #28 ENSBMUG00000023244 ENSBMUG00000023259 #30 ZNF789 (ENSBMUG00000023267) FAM200A (ENSBMUG00000023277) ZNF655 (ENSBMUG00000023339) #31 ENSBMUG00000023294 TMEM225B (ENSBMUG00000023356) Domestic yak MODERN SPECIES 18 ENSBGRG00000025625 #7 ENSBGRG00000025431 #8 ENSBGRG00000025381 #9 LMTK2 (ENSBGRG00000025270) #10 BHLHA15 (ENSBGRG00000025237) #11 TECPR1 (ENSBGRG00000025127) #12 BRI3 (ENSBGRG00000025097) #13 BAIAP2L1 (ENSBGRG00000025058) #14 NPTX2 (ENSBGRG00000025022) #16 TMEM130 (ENSBGRG00000024946) #17 TRRAP (ENSBGRG00000024841) #18 ENSBGRG00000024800 SMURF1 (ENSBGRG00000024646) #19 KPNA7 (ENSBGRG00000024547) #20 ENSBGRG00000024515 #21 ENSBGRG00000024499 #21 ENSBGRG00000024483 #22 PDAP1 (ENSBGRG00000024415) #23 BUD31 (ENSBGRG00000024361) #24 PTCD1 (ENSBGRG00000024303) CPSF4 (ENSBGRG00000024142) #26 ENSBGRG00000024105 #27 ENSBGRG00000024073 ENSBGRG00000024059 ZNF394 (ENSBGRG00000024040) #28 ZKSCAN5 (ENSBGRG00000024023) #30 ENSBGRG00000024016 ZNF789 (ENSBGRG00000023983) FAM200A (ENSBGRG00000023967) ZNF655 (ENSBGRG00000023838) #31 ENSBGRG00000023765 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.r #21 Cetacea ANCESTRAL SPECIES 1 ENSGT00940000157646 ENSGT00390000016326 ENSGT00940000153731.a.a ENSGT00950000183129.b.a ENSGT00940000158944 ENSGT00940000158207 ENSGT00390000001442 ENSGT00940000158907 ENSGT00390000004624.a.a ENSGT00940000153432.B ENSGT00500000044987 ENSGT00390000003050 ENSGT00530000063923.a ENSGT00390000006096.a.b ENSGT00940000160020 ENSGT00950000183183.b.a.r #21 ENSGT00940000154668 ENSGT00390000009290 ENSGT00960000189773 ENSGT00510000049326.b.b ENSGT00390000010075 ENSGT00940000159987 ENSGT00390000014416 ENSGT00390000006707.r.g ENSGT00390000011383 ENSGT00940000154721.vb.a ENSGT00390000009130.a.a.b ENSGT00940000158747 ENSGT00940000156814 ENSGT00940000161231 ENSGT00940000156804 Blue whale MODERN SPECIES 14 ISL1 (ENSBMSG00010003004) ENSBMSG00010002989 PARP8 (ENSBMSG00010002818) EMB (ENSBMSG00010002758) HCN1 (ENSBMSG00010002726) MRPS30 (ENSBMSG00010002707) FGF10 (ENSBMSG00010002699) ENSBMSG00010002689 NNT (ENSBMSG00010002650) PAIP1 (ENSBMSG00010002619) C5orf34 (ENSBMSG00010002595) TMEM267 (ENSBMSG00010002583) CCL28 (ENSBMSG00010002574) HMGCS1 (ENSBMSG00010002551) NIM1K (ENSBMSG00010002540) ENSBMSG00010002531 #21 ZNF131 (ENSBMSG00010002495) ENSBMSG00010002479 ENSBMSG00010002468 ENSBMSG00010002463 CCDC152 (ENSBMSG00010002439) GHR (ENSBMSG00010002362) ENSBMSG00010002320 FBXO4 (ENSBMSG00010002261) ENSBMSG00010002244 RIMOC1 (ENSBMSG00010002238) ENSBMSG00010002229 OXCT1 (ENSBMSG00010002211) PLCXD3 (ENSBMSG00010002197) C6 (ENSBMSG00010002171) MROH2B (ENSBMSG00010002084) Odontoceti DUPLICATION Odontoceti ANCESTRAL SPECIES ENSGT00950000183183.b.a.r.a #21 Sperm whale MODERN SPECIES 16 ENSPCTG00005000520 RAMP3 (ENSPCTG00005000535) ENSPCTG00005000553 ADCY1 (ENSPCTG00005000587) IGFBP1 (ENSPCTG00005000667) IGFBP3 (ENSPCTG00005000698) ENSPCTG00005000738 UBE2D4 (ENSPCTG00005000753) DBNL (ENSPCTG00005000789) PGAM2 (ENSPCTG00005000870) VOPP1 (ENSPCTG00005000911) LANCL2 (ENSPCTG00005001055) EGFR (ENSPCTG00005001100) SEC61G (ENSPCTG00005001175) VSTM2A (ENSPCTG00005001196) ENSPCTG00005001218 #21 ENSPCTG00005001225 GRB10 (ENSPCTG00005001292) DDC (ENSPCTG00005001473) FIGNL1 (ENSPCTG00005001765) IKZF1 (ENSPCTG00005001820) SPATA48 (ENSPCTG00005002024) ZPBP (ENSPCTG00005002058) VWC2 (ENSPCTG00005002093) Odontoceti DUPLICATION Odontoceti ANCESTRAL SPECIES 1 ENSGT00940000157646 ENSGT00390000016326 ENSGT00940000153731.a.a ENSGT00950000183129.b.a ENSGT00940000158944 ENSGT00940000158207 ENSGT00390000001442 ENSGT00940000158907 ENSGT00390000004624.a.a ENSGT00940000153432.B ENSGT00500000044987 ENSGT00390000003050 ENSGT00530000063923.a ENSGT00390000006096.a.b ENSGT00940000160020 ENSGT00950000183183.b.a.r.b.a #21 ENSGT00940000154668 ENSGT00390000009290 ENSGT00940000167563 ENSGT00510000049326.b.b ENSGT00390000010075 ENSGT00940000159987 ENSGT00390000014416 ENSGT00390000006707.r.g ENSGT00390000011383 ENSGT00940000154721.vb.a ENSGT00390000009130.a.a.b ENSGT00940000158747 ENSGT00940000156814 ENSGT00940000161231 ENSGT00940000156804 Sperm whale MODERN SPECIES 19 ITGA1 (ENSPCTG00005020865) ISL1 (ENSPCTG00005020817) PARP8 (ENSPCTG00005020580) EMB (ENSPCTG00005020420) ENSPCTG00005020399 HCN1 (ENSPCTG00005020324) MRPS30 (ENSPCTG00005020299) FGF10 (ENSPCTG00005020276) NNT (ENSPCTG00005020182) PAIP1 (ENSPCTG00005020031) C8H5orf34 (ENSPCTG00005019995) TMEM267 (ENSPCTG00005019979) CCL28 (ENSPCTG00005019939) HMGCS1 (ENSPCTG00005019894) NIM1K (ENSPCTG00005019860) ENSPCTG00005019822 #21 ZNF131 (ENSPCTG00005019729) ENSPCTG00005019667 CCDC152 (ENSPCTG00005019630) GHR (ENSPCTG00005019431) FBXO4 (ENSPCTG00005019359) C8H5orf51 (ENSPCTG00005019324) ENSPCTG00005019287 OXCT1 (ENSPCTG00005019136) PLCXD3 (ENSPCTG00005019106) ENSPCTG00005019087 C7 (ENSPCTG00005018916) ENSPCTG00005018695 ENSPCTG00005018427 C6 (ENSPCTG00005018209) ENSPCTG00005018189 Odontoceti_a ANCESTRAL SPECIES 1 ENSGT00940000157646 ENSGT00390000016326 ENSGT00940000153731.a.a ENSGT00950000183129.b.a ENSGT00940000158944 ENSGT00940000158207 ENSGT00390000001442 ENSGT00940000158907 ENSGT00390000004624.a.a ENSGT00940000153432.B ENSGT00500000044987 ENSGT00390000003050 ENSGT00530000063923.a ENSGT00390000006096.a.b ENSGT00940000160020 ENSGT00950000183183.b.a.r.b.a #21 ENSGT00940000154668 ENSGT00390000009290 ENSGT00940000167563 ENSGT00510000049326.b.b ENSGT00390000010075 ENSGT00940000159987 ENSGT00390000014416 ENSGT00390000006707.r.g ENSGT00390000011383 ENSGT00390000009130.a.a.b ENSGT00940000158747 ENSGT00940000156814 ENSGT00940000161231 ENSGT00940000156804 ENSGT00940000162106 Odontoceti_b ANCESTRAL SPECIES 1 ENSGT00940000157646 ENSGT00390000016326 ENSGT00940000153731.a.a ENSGT00950000183129.b.a ENSGT00940000158944 ENSGT00940000158207 ENSGT00390000001442 ENSGT00940000158907 ENSGT00390000004624.a.a ENSGT00940000153432.B ENSGT00500000044987 ENSGT00390000003050 ENSGT00530000063923.a ENSGT00390000006096.a.b ENSGT00940000160020 ENSGT00950000183183.b.a.r.b.a #21 ENSGT00940000154668.rb.a ENSGT00390000009290 ENSGT00940000167563 ENSGT00510000049326.b.b ENSGT00390000010075 ENSGT00940000159987 ENSGT00390000014416 ENSGT00390000011383 ENSGT00390000006707.r.g ENSGT00390000009130.a.a.b ENSGT00940000158747 ENSGT00940000156814 ENSGT00940000161231 ENSGT00940000156804 ENSGT00390000005254.i.a.a.a.a Monodontidae ANCESTRAL SPECIES 7 ENSGT00390000016326 ENSGT00940000153731.a.a ENSGT00950000183129.b.a ENSGT00940000158944 ENSGT00940000158207 ENSGT00390000001442 ENSGT00940000158907 ENSGT00390000004624.a.a ENSGT00940000153432.B.e ENSGT00500000044987 ENSGT00950000184497 ENSGT00390000003050 ENSGT00530000063923.a ENSGT00390000006096.a.b ENSGT00940000160020 ENSGT00950000183183.b.a.r.b.a #21 ENSGT00940000154668.rb.a ENSGT00940000167563 ENSGT00510000049326.b.b ENSGT00390000010075 ENSGT00940000159987 ENSGT00390000014416 ENSGT00390000011383 ENSGT00390000006707.r.g ENSGT00390000009130.a.a.b ENSGT00940000158747 ENSGT00940000156814 ENSGT00940000161231 ENSGT00940000156804 ENSGT00940000162106 ENSGT00390000005254.i.a.b.c Narwhal MODERN SPECIES 298 ENSMMNG00015004553 EMB (ENSMMNG00015004544) ENSMMNG00015004536 HCN1 (ENSMMNG00015004515) MRPS30 (ENSMMNG00015004506) FGF10 (ENSMMNG00015004491) ENSMMNG00015004472 NNT (ENSMMNG00015004443) ENSMMNG00015004420 C5orf34 (ENSMMNG00015004395) ENSMMNG00015004383 TMEM267 (ENSMMNG00015004375) CCL28 (ENSMMNG00015004364) HMGCS1 (ENSMMNG00015004354) NIM1K (ENSMMNG00015004346) ENSMMNG00015004332 #21 ENSMMNG00015004312 ENSMMNG00015004294 ENSMMNG00015004288 CCDC152 (ENSMMNG00015004263) GHR (ENSMMNG00015004218) FBXO4 (ENSMMNG00015004176) ENSMMNG00015004154 RIMOC1 (ENSMMNG00015004141) OXCT1 (ENSMMNG00015004110) ENSMMNG00015004093 PLCXD3 (ENSMMNG00015004082) ENSMMNG00015004073 C6 (ENSMMNG00015004038) MROH2B (ENSMMNG00015003995) C7 (ENSMMNG00015003958) Vaquita MODERN SPECIES 34 KLHL34 (ENSPSNG00000022394) CNKSR2 (ENSPSNG00000022151) ENSPSNG00000021866 ENSPSNG00000021849 RPS6KA3 (ENSPSNG00000021768) EIF1AX (ENSPSNG00000021671) MAP7D2 (ENSPSNG00000021591) BCLAF3 (ENSPSNG00000021539) ENSPSNG00000021512 SH3KBP1 (ENSPSNG00000021240) PDHA1 (ENSPSNG00000020773) ADGRG2 (ENSPSNG00000020539) PHKA2 (ENSPSNG00000020358) PPEF1 (ENSPSNG00000020159) RS1 (ENSPSNG00000020065) ENSPSNG00000020052 #21 CDKL5 (ENSPSNG00000020000) ENSPSNG00000019959 ENSPSNG00000019901 RAI2 (ENSPSNG00000019870) ENSPSNG00000019850 NHS (ENSPSNG00000019626) ENSPSNG00000019571 ENSPSNG00000019537 REPS2 (ENSPSNG00000019316) RBBP7 (ENSPSNG00000019143) TXLNG (ENSPSNG00000019040) SYAP1 (ENSPSNG00000018949) S100G (ENSPSNG00000018903) CTPS2 (ENSPSNG00000018863) GRPR (ENSPSNG00000018819) Odontoceti ANCESTRAL SPECIES ENSGT00950000183183.b.a.r.b.b #21 Sperm whale MODERN SPECIES 2 KIAA0586 (ENSPCTG00005005784) TIMM9 (ENSPCTG00005005709) ARID4A (ENSPCTG00005005643) ENSPCTG00005005585 ACTR10 (ENSPCTG00005022758) ARMH4 (ENSPCTG00005022756) SLC35F4 (ENSPCTG00005022755) CCDC198 (ENSPCTG00005022752) NAA30 (ENSPCTG00005022750) AP5M1 (ENSPCTG00005022748) EXOC5 (ENSPCTG00005022744) OTX2 (ENSPCTG00005022740) TMEM260 (ENSPCTG00005022736) PELI2 (ENSPCTG00005022734) KTN1 (ENSPCTG00005022715) ENSPCTG00005022708 #21 TBPL2 (ENSPCTG00005022707) ATG14 (ENSPCTG00005022705) FBXO34 (ENSPCTG00005022704) DLGAP5 (ENSPCTG00005022701) LGALS3 (ENSPCTG00005022698) ENSPCTG00005022696 ENSPCTG00005022694 MAPK1IP1L (ENSPCTG00005022693) SOCS4 (ENSPCTG00005022691) WDHD1 (ENSPCTG00005022686) GCH1 (ENSPCTG00005022684) SAMD4A (ENSPCTG00005022681) CGRRF1 (ENSPCTG00005022680) GMFB (ENSPCTG00005022677) CNIH1 (ENSPCTG00005022675) Euarchontoglires ANCESTRAL SPECIES 12 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j #34 Primates ANCESTRAL SPECIES 11 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a ##34 Strepsirrhini ANCESTRAL SPECIES 14 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a.b ##34 Lemuriformes DUPLICATION Lemuriformes DUPLICATION Lemuriformes ANCESTRAL SPECIES 6 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.s.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a.a ##34 Lemuriformes_a ANCESTRAL SPECIES 16 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.s.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a.a ##34 Coquerels sifaka DUPLICATION Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 323 ACSM6 (ENSPCOG00000018498) ACSM4 (ENSPCOG00000024533) THUMPD1 (ENSPCOG00000024663) ACSM3 (ENSPCOG00000014215) ERI2 (ENSPCOG00000016395) REXO5 (ENSPCOG00000018775) ENSPCOG00000014378 LYRM1 (ENSPCOG00000023377) ENSPCOG00000028230 #21 DNAH3 (ENSPCOG00000008308) LDAF1 (ENSPCOG00000026805) ZP2 (ENSPCOG00000017301) ANKS4B (ENSPCOG00000016008) CRYM (ENSPCOG00000016833) ENSPCOG00000013546 PDZD9 (ENSPCOG00000017825) MOSMO (ENSPCOG00000014615) ENSPCOG00000015561 SDR42E2 (ENSPCOG00000027847) EEF2K (ENSPCOG00000023653) POLR3E (ENSPCOG00000005284) CDR2 (ENSPCOG00000016585) ENSPCOG00000011127 IGSF6 (ENSPCOG00000017774) Coquerels sifaka MODERN SPECIES 580 ENSPCOG00000013043 #21 ENSPCOG00000021221 AGTR2 (ENSPCOG00000025934) ENSPCOG00000019015 SLC6A14 (ENSPCOG00000015850) CT83 (ENSPCOG00000010682) Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 155 AIMP2 (ENSPCOG00000024068) PMS2 (ENSPCOG00000019462) ENSPCOG00000024104 #7 ENSPCOG00000025277 #8 ENSPCOG00000017766 #9 LMTK2 (ENSPCOG00000025104) #10 TECPR1 (ENSPCOG00000015825) #12 BRI3 (ENSPCOG00000000280) #13 BAIAP2L1 (ENSPCOG00000022611) #14 NPTX2 (ENSPCOG00000024897) #16 TMEM130 (ENSPCOG00000025459) #17 TRRAP (ENSPCOG00000021914) #18 SMURF1 (ENSPCOG00000023089) #19 KPNA7 (ENSPCOG00000026168) #20 ENSPCOG00000017933 ENSPCOG00000013572 #21 ARPC1B (ENSPCOG00000010552) #22 PDAP1 (ENSPCOG00000024638) #23 BUD31 (ENSPCOG00000016931) #24 PTCD1 (ENSPCOG00000018596) CPSF4 (ENSPCOG00000012771) #26 ATP5MF (ENSPCOG00000027298) #27 ZNF789 (ENSPCOG00000020262) ZNF394 (ENSPCOG00000025668) #28 ZKSCAN5 (ENSPCOG00000024797) #30 ZNF655 (ENSPCOG00000017676) #31 TMEM225B (ENSPCOG00000020944) ZSCAN25 (ENSPCOG00000020153) #32 ENSPCOG00000002834 ##34 ENSPCOG00000023160 CYP3A201 (ENSPCOG00000018451) ##34 Coquerels sifaka MODERN SPECIES 345 MTO1 (ENSPCOG00000019343) ENSPCOG00000027789 ENSPCOG00000026320 SLC17A5 (ENSPCOG00000014513) CD109 (ENSPCOG00000015200) ENSPCOG00000026844 COL12A1 (ENSPCOG00000026081) COX7A2 (ENSPCOG00000021379) TMEM30A (ENSPCOG00000017026) FILIP1 (ENSPCOG00000023751) ENSPCOG00000008115 SENP6 (ENSPCOG00000021433) MYO6 (ENSPCOG00000016731) IMPG1 (ENSPCOG00000013809) ENSPCOG00000007245 ENSPCOG00000021537 #21 HTR1B (ENSPCOG00000014248) MEI4 (ENSPCOG00000023963) IRAK1BP1 (ENSPCOG00000018402) PHIP (ENSPCOG00000025776) ENSPCOG00000027594 HMGN3 (ENSPCOG00000020626) LCA5 (ENSPCOG00000026990) SH3BGRL2 (ENSPCOG00000010718) ELOVL4 (ENSPCOG00000027157) TTK (ENSPCOG00000020369) BCKDHB (ENSPCOG00000001558) TENT5A (ENSPCOG00000014245) Mouse lemur MODERN SPECIES 8 ENSMICG00000012768 #7 ENSMICG00000012751 #8 ENSMICG00000042503 #9 ENSMICG00000046401 LMTK2 (ENSMICG00000002866) #10 BHLHA15 (ENSMICG00000036615) #11 TECPR1 (ENSMICG00000002874) #12 ENSMICG00000043223 #13 BAIAP2L1 (ENSMICG00000002891) #14 NPTX2 (ENSMICG00000002901) #16 TMEM130 (ENSMICG00000002904) #17 TRRAP (ENSMICG00000002909) #18 SMURF1 (ENSMICG00000042244) #19 KPNA7 (ENSMICG00000017420) #20 ENSMICG00000017421 ENSMICG00000017423 #21 ARPC1B (ENSMICG00000017424) #22 PDAP1 (ENSMICG00000017425) #23 ENSMICG00000017426 #24 PTCD1 (ENSMICG00000017428) CPSF4 (ENSMICG00000017429) #26 ENSMICG00000044867 #27 ENSMICG00000034093 ZNF789 (ENSMICG00000005979) ZNF394 (ENSMICG00000005987) #28 ZKSCAN5 (ENSMICG00000005991) #30 ZNF655 (ENSMICG00000006010) #31 TMEM225B (ENSMICG00000029262) ZSCAN25 (ENSMICG00000006018) #32 ENSMICG00000014650 ##34 ENSMICG00000006024 ##34 Lemuriformes ANCESTRAL SPECIES ENSGT00950000183183.b.a.s.b #21 Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 1 ENSMICG00000013112 RCL1 (ENSMICG00000015562) JAK2 (ENSMICG00000003885) INSL6 (ENSMICG00000044551) ENSMICG00000043730 PLGRKT (ENSMICG00000031798) CD274 (ENSMICG00000035171) PDCD1LG2 (ENSMICG00000004284) RIC1 (ENSMICG00000016293) ENSMICG00000030745 ERMP1 (ENSMICG00000016329) MLANA (ENSMICG00000048054) KIAA2026 (ENSMICG00000032366) ENSMICG00000026566 IL33 (ENSMICG00000009247) ENSMICG00000035564 #21 ENSMICG00000033153 TPD52L3 (ENSMICG00000000600) UHRF2 (ENSMICG00000036338) GLDC (ENSMICG00000000602) KDM4C (ENSMICG00000010464) DMAC1 (ENSMICG00000035725) ENSMICG00000035188 ENSMICG00000031481 PTPRD (ENSMICG00000006128) FBP2 (ENSMICG00000001148) ENSMICG00000014909 ENSMICG00000047245 ENSMICG00000035231 PRUNE2 (ENSMICG00000042329) FOXB2 (ENSMICG00000032613) Mouse lemur MODERN SPECIES 9 CCDC96 (ENSMICG00000007976) TADA2B (ENSMICG00000033119) ENSMICG00000043820 SORCS2 (ENSMICG00000011732) AFAP1 (ENSMICG00000005712) ENSMICG00000033823 ENSMICG00000033614 ABLIM2 (ENSMICG00000005733) SH3TC1 (ENSMICG00000013247) PIGG (ENSMICG00000012340) PDE6B (ENSMICG00000010725) ATP5ME (ENSMICG00000046376) MYL5 (ENSMICG00000034354) SLC49A3 (ENSMICG00000035034) PCGF3 (ENSMICG00000046135) ENSMICG00000032656 #21 CPLX1 (ENSMICG00000036308) GAK (ENSMICG00000012895) TMEM175 (ENSMICG00000029354) DGKQ (ENSMICG00000012917) SLC26A1 (ENSMICG00000033003) IDUA (ENSMICG00000012938) FGFRL1 (ENSMICG00000030053) RNF212 (ENSMICG00000047687) ENSMICG00000033680 ENSMICG00000036701 SPON2 (ENSMICG00000002454) CTBP1 (ENSMICG00000012941) MAEA (ENSMICG00000012953) UVSSA (ENSMICG00000012963) ENSMICG00000044932 Lemuriformes_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.s.b #21 Coquerels sifaka MODERN SPECIES 234 ENSPCOG00000026534 #21 ENSPCOG00000024361 RNF187 (ENSPCOG00000002810) ENSPCOG00000005164 H2BC26 (ENSPCOG00000003934) H2AC25 (ENSPCOG00000013826) H3-4 (ENSPCOG00000026493) TRIM17 (ENSPCOG00000026287) TRIM11 (ENSPCOG00000016532) OBSCN (ENSPCOG00000028285) IBA57 (ENSPCOG00000028589) GUK1 (ENSPCOG00000009766) MRPL55 (ENSPCOG00000013827) C1orf35 (ENSPCOG00000025028) ARF1 (ENSPCOG00000026770) WNT3A (ENSPCOG00000024931) Lemuriformes ANCESTRAL SPECIES ENSGT00950000183183.b.a.t #21 Lemuriformes_a ANCESTRAL SPECIES ENSGT00950000183183.b.a.t #21 Greater bamboo lemur MODERN SPECIES 522 ENSPSMG00000003153 #7 ENSPSMG00000003157 ENSPSMG00000003259 #8 ENSPSMG00000003348 #9 LMTK2 (ENSPSMG00000003391) #10 BHLHA15 (ENSPSMG00000003426) #11 TECPR1 (ENSPSMG00000003451) #12 BRI3 (ENSPSMG00000003477) #13 BAIAP2L1 (ENSPSMG00000003502) #14 NPTX2 (ENSPSMG00000003510) #16 ENSPSMG00000003514 TMEM130 (ENSPSMG00000003560) #17 TRRAP (ENSPSMG00000004004) #18 SMURF1 (ENSPSMG00000004395) #19 KPNA7 (ENSPSMG00000004499) #20 ARPC1A (ENSPSMG00000004536) #21 ARPC1B (ENSPSMG00000004575) #22 PDAP1 (ENSPSMG00000004603) #23 BUD31 (ENSPSMG00000004621) #24 PTCD1 (ENSPSMG00000004631) CPSF4 (ENSPSMG00000004691) #26 ATP5MF (ENSPSMG00000004717) #27 ENSPSMG00000004726 ZNF789 (ENSPSMG00000004734) ENSPSMG00000004745 #28 ZKSCAN5 (ENSPSMG00000004768) #30 ENSPSMG00000004779 FAM200A (ENSPSMG00000004785) ZNF655 (ENSPSMG00000004861) #31 TMEM225B (ENSPSMG00000004872) ZSCAN25 (ENSPSMG00000004884) #32 Bushbaby MODERN SPECIES 257 PMS2 (ENSOGAG00000001128) ENSOGAG00000001126 #7 ENSOGAG00000027379 #8 ENSOGAG00000007674 #9 LMTK2 (ENSOGAG00000010100) #10 BHLHA15 (ENSOGAG00000010106) #11 TECPR1 (ENSOGAG00000010108) #12 ENSOGAG00000000638 #13 BAIAP2L1 (ENSOGAG00000000639) #14 NPTX2 (ENSOGAG00000000640) #16 TMEM130 (ENSOGAG00000000642) #17 TRRAP (ENSOGAG00000000643) #18 SMURF1 (ENSOGAG00000009903) #19 ENSOGAG00000031106 #20 ENSOGAG00000028575 ARPC1A (ENSOGAG00000010870) #21 ARPC1B (ENSOGAG00000010872) #22 ENSOGAG00000010874 #23 BUD31 (ENSOGAG00000010875) #24 PTCD1 (ENSOGAG00000010877) CPSF4 (ENSOGAG00000010884) #26 ENSOGAG00000032002 ZNF394 (ENSOGAG00000025525) #28 ZKSCAN5 (ENSOGAG00000010899) #30 FAM200A (ENSOGAG00000026707) ZNF655 (ENSOGAG00000009915) #31 TMEM225B (ENSOGAG00000032661) ZSCAN25 (ENSOGAG00000011024) #32 CYP3A4 (ENSOGAG00000011021) ##34 CYP3A169 (ENSOGAG00000004122) ##34 ENSOGAG00000004125 ##34 Haplorrhini ANCESTRAL SPECIES 26 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.a ##34 ENSGT01090000260018.B.b Tarsier DUPLICATION Tarsier DUPLICATION Tarsier DUPLICATION Tarsier DUPLICATION Tarsier MODERN SPECIES 5169 ADTRP (ENSTSYG00000011185) ENSTSYG00000025560 #21 Tarsier MODERN SPECIES 4494 CTSL (ENSTSYG00000002858) ENSTSYG00000036578 #21 Tarsier DUPLICATION Tarsier MODERN SPECIES 3946 ENSTSYG00000028432 #21 Tarsier MODERN SPECIES 4016 ENSTSYG00000032279 ENSTSYG00000036023 METTL13 (ENSTSYG00000012467) VAMP4 (ENSTSYG00000010345) MYOC (ENSTSYG00000028331) ENSTSYG00000025928 PRRC2C (ENSTSYG00000014050) ENSTSYG00000025506 #21 Tarsier MODERN SPECIES 4203 ENSTSYG00000009967 ARPC1A (ENSTSYG00000003574) #21 ARPC1B (ENSTSYG00000033630) #22 PDAP1 (ENSTSYG00000035864) #23 BUD31 (ENSTSYG00000026135) #24 PTCD1 (ENSTSYG00000029495) CPSF4 (ENSTSYG00000005712) #26 ATP5MF (ENSTSYG00000026376) #27 ZNF394 (ENSTSYG00000013540) #28 ZNF789 (ENSTSYG00000031696) ZKSCAN5 (ENSTSYG00000014107) #30 ZNF655 (ENSTSYG00000002676) #31 TMEM225B (ENSTSYG00000032314) ZSCAN25 (ENSTSYG00000033603) #32 ENSTSYG00000009030 Tarsier MODERN SPECIES 6840 KCTD13 (ENSTSYG00000037437) TMEM219 (ENSTSYG00000000592) TAOK2 (ENSTSYG00000036147) ENSTSYG00000004257 INO80E (ENSTSYG00000027247) DOC2A (ENSTSYG00000027221) C16orf92 (ENSTSYG00000003859) FAM57B (ENSTSYG00000033577) ENSTSYG00000025998 ALDOA (ENSTSYG00000004505) PPP4C (ENSTSYG00000004533) TBX6 (ENSTSYG00000030769) YPEL3 (ENSTSYG00000028159) GDPD3 (ENSTSYG00000005758) MAPK3 (ENSTSYG00000005769) ENSTSYG00000025554 #21 CORO1A (ENSTSYG00000033562) ENSTSYG00000006761 ENSTSYG00000035667 ENSTSYG00000031308 XPO6 (ENSTSYG00000012249) Simiiformes ANCESTRAL SPECIES 26 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 Platyrrhini ANCESTRAL SPECIES 19 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 ENSGT00940000163330 Cebidae ANCESTRAL SPECIES 24 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.z.a #22 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 Marmoset DUPLICATION Marmoset MODERN SPECIES 11 PMS2 (ENSCJAG00000015340) ENSCJAG00000015308 #7 ENSCJAG00000015269 #8 ENSCJAG00000015258 #9 LMTK2 (ENSCJAG00000015240) #10 BHLHA15 (ENSCJAG00000023085) #11 TECPR1 (ENSCJAG00000033050) #12 BRI3 (ENSCJAG00000071589) #13 BAIAP2L1 (ENSCJAG00000031937) #14 NPTX2 (ENSCJAG00000015220) #16 ENSCJAG00000078860 TMEM130 (ENSCJAG00000016109) #17 TRRAP (ENSCJAG00000016008) #18 SMURF1 (ENSCJAG00000046325) #19 KPNA7 (ENSCJAG00000015943) #20 ENSCJAG00000015859 #21 ENSCJAG00000015849 #22 PDAP1 (ENSCJAG00000015838) #23 BUD31 (ENSCJAG00000015836) #24 PTCD1 (ENSCJAG00000015815) CPSF4 (ENSCJAG00000015826) #26 ATP5MF (ENSCJAG00000045628) #27 ZNF789 (ENSCJAG00000015813) ZKSCAN5 (ENSCJAG00000015788) #30 ZNF394 (ENSCJAG00000015808) #28 ZNF655 (ENSCJAG00000032195) #31 TMEM225B (ENSCJAG00000033315) ZSCAN25 (ENSCJAG00000015783) #32 CYP3A90 (ENSCJAG00000064350) ##34 CYP3A5 (ENSCJAG00000064981) ##34 CYP3A4 (ENSCJAG00000015744) ##34 Marmoset MODERN SPECIES 15 FRAS1 (ENSCJAG00000014882) ANXA3 (ENSCJAG00000014968) BMP2K (ENSCJAG00000014993) PAQR3 (ENSCJAG00000046327) NAA11 (ENSCJAG00000023110) GK2 (ENSCJAG00000023111) ANTXR2 (ENSCJAG00000015024) ENSCJAG00000022250 PRDM8 (ENSCJAG00000015064) FGF5 (ENSCJAG00000076442) CFAP299 (ENSCJAG00000015075) BMP3 (ENSCJAG00000062893) PRKG2 (ENSCJAG00000015083) ENSCJAG00000073198 RASGEF1B (ENSCJAG00000015113) ENSCJAG00000023152 #21 ENSCJAG00000048181 ENSCJAG00000071896 ENSCJAG00000043771 HNRNPD (ENSCJAG00000015165) ENSCJAG00000015197 ENSCJAG00000081064 ENSCJAG00000071687 ENOPH1 (ENSCJAG00000048699) TMEM150C (ENSCJAG00000081174) SCD5 (ENSCJAG00000039485) ENSCJAG00000072138 ENSCJAG00000005062 SEC31A (ENSCJAG00000004799) THAP9 (ENSCJAG00000005095) LIN54 (ENSCJAG00000005110) Cebidae_a ANCESTRAL SPECIES 19 ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a.c #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B.i.a #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.y #22 ENSGT00950000183183.b.b.z.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.`b #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b ##34 Capuchin MODERN SPECIES 82 PMS2 (ENSCCAG00000034137) ENSCCAG00000023211 #7 ENSCCAG00000000590 ENSCCAG00000008446 #8 ENSCCAG00000027694 #9 LMTK2 (ENSCCAG00000021992) #10 TECPR1 (ENSCCAG00000022147) #12 BRI3 (ENSCCAG00000022002) #13 BAIAP2L1 (ENSCCAG00000022124) #14 NPTX2 (ENSCCAG00000021986) #16 TMEM130 (ENSCCAG00000021884) #17 TRRAP (ENSCCAG00000031555) #18 SMURF1 (ENSCCAG00000037956) #19 ENSCCAG00000037962 #20 ENSCCAG00000024944 ARPC1A (ENSCCAG00000019780) #21 ENSCCAG00000037322 #22 PDAP1 (ENSCCAG00000031892) #23 BUD31 (ENSCCAG00000021788) #24 PTCD1 (ENSCCAG00000034025) CPSF4 (ENSCCAG00000028291) #26 ENSCCAG00000017059 #27 ENSCCAG00000020703 ZNF394 (ENSCCAG00000027351) #28 ZNF789 (ENSCCAG00000025456) ZKSCAN5 (ENSCCAG00000030902) #30 ZNF655 (ENSCCAG00000022358) #31 TMEM225B (ENSCCAG00000018539) ENSCCAG00000037804 ZSCAN25 (ENSCCAG00000037223) #32 CYP3A5 (ENSCCAG00000034158) ##34 Mas night monkey MODERN SPECIES 556 ENSANAG00000009006 PMS2 (ENSANAG00000030348) ENSANAG00000008157 #7 ENSANAG00000034191 #8 ENSANAG00000024814 #9 LMTK2 (ENSANAG00000030215) #10 TECPR1 (ENSANAG00000034833) #12 BRI3 (ENSANAG00000027654) #13 ENSANAG00000024350 #14 NPTX2 (ENSANAG00000037968) #16 TMEM130 (ENSANAG00000034905) #17 TRRAP (ENSANAG00000031335) #18 SMURF1 (ENSANAG00000031906) #19 ENSANAG00000024791 #20 ENSANAG00000019992 ARPC1A (ENSANAG00000038029) #21 ENSANAG00000023601 #22 PDAP1 (ENSANAG00000035351) #23 ENSANAG00000027119 #24 PTCD1 (ENSANAG00000035790) CPSF4 (ENSANAG00000021360) #26 ATP5MF (ENSANAG00000021638) #27 ZNF394 (ENSANAG00000030792) #28 ZNF789 (ENSANAG00000028480) ZKSCAN5 (ENSANAG00000032873) #30 ZNF655 (ENSANAG00000029025) #31 TMEM225B (ENSANAG00000035558) ZSCAN25 (ENSANAG00000020427) #32 ENSANAG00000022722 CYP3A5 (ENSANAG00000032272) ##34 TRIM4 (ENSANAG00000036020) Catarrhini DUPLICATION Catarrhini DUPLICATION Catarrhini DUPLICATION Catarrhini DUPLICATION Catarrhini ANCESTRAL SPECIES ENSGT00950000183183.b.a.y.a.a.a #21 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.y.a.a.a #21 Cercopithecinae ANCESTRAL SPECIES 1 ENSGT00940000163013.b.a ENSGT00940000163013.b.b ENSGT00940000165725 ENSGT01100000263534.b.k.a.b.b.a.b.d ENSGT00940000154397.b.c.a.b.a.a ENSGT00940000154397.a ENSGT00940000163013.a ENSGT00940000154397.b.c.b.a.b.c ENSGT00940000164431 ENSGT00940000165246 ENSGT00940000154397.b.c.a.b.b ENSGT00940000163506.a.a ENSGT00940000154397.b.c.a.b.a.b ENSGT00940000154397.b.c.b.a.b.d ENSGT00940000164101.a.a ENSGT00950000183183.b.a.y.a.a.a #21 ENSGT00940000164101.a.b ENSGT00940000162609.a ENSGT00940000164638 ENSGT00940000164205 ENSGT00940000162609.b ENSGT00940000154411.`b.i.f ENSGT00940000160770.B.b.a ENSGT01100000263534.b.k.a.b.b.a.b.c ENSGT00940000155274.b.c.b ENSGT00940000154397.b.c.a.a.a.b ENSGT00940000163506.a.b.b ENSGT01030000234542.b.a.a.a.b.a.b.c.b.d ENSGT00940000154397.b.c.a.a.b ENSGT00940000161267.a.a ENSGT00640000091698 Cercopithecinae_a ANCESTRAL SPECIES 3 ENSGT00940000163746.a.b ENSGT00940000163013.b.a ENSGT00940000163013.b.b ENSGT00940000165725 ENSGT01100000263534.b.k.a.b.b.a.b.d ENSGT00940000154397.b.c.a.b.a.a ENSGT00940000163013.a ENSGT00940000154397.b.c.b.a.b.c ENSGT00940000164431 ENSGT00940000165246 ENSGT00940000154397.b.c.a.b.b ENSGT00940000163506.a.a ENSGT00940000154397.b.c.a.b.a.b ENSGT00940000154397.b.c.b.a.b.d ENSGT00940000164101.a.a ENSGT00950000183183.b.a.y.a.a.a #21 ENSGT00940000164101.a.b ENSGT00940000162609.a ENSGT00940000164638 ENSGT00940000164205 ENSGT00940000162609.b ENSGT00940000160770.B.b.a ENSGT01100000263534.b.k.a.b.b.a.b.c ENSGT00940000155274.b.c.b ENSGT00940000154397.b.c.a.a.a.b ENSGT00940000163506.a.b.b ENSGT01030000234542.b.a.a.a.b.a.b.c.b.d ENSGT00940000154397.b.c.a.a.b ENSGT00940000161267.a.a ENSGT00640000091698 ENSGT00940000160873 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000183183.b.a.y.a.a.a #21 Cercopithecinae_d ANCESTRAL SPECIES 9 ENSGT00940000163746.a.a ENSGT00940000163746.a.b ENSGT00940000163013.b.a ENSGT00940000163013.b.b ENSGT00940000165725 ENSGT01100000263534.b.k.a.b.b.a.b.d ENSGT00940000154397.b.c.a.b.a.a ENSGT00940000154397.a ENSGT00940000164431 ENSGT00940000165246 ENSGT00940000154397.b.c.a.b.b ENSGT00940000163506.a.a ENSGT00940000154397.b.c.a.b.a.b ENSGT00940000154397.b.c.b.a.b.d.a ENSGT01100000263507.D.a.a.a.b.a.a ENSGT00950000183183.b.a.y.a.a.a #21 ENSGT00940000162609.a ENSGT00940000164638 ENSGT00940000164205 ENSGT00940000162609.b ENSGT00940000160770.B.b.a ENSGT01100000263534.b.k.a.b.b.a.b.c ENSGT00940000155274.b.c.b ENSGT00940000154397.b.c.a.a.a.b ENSGT00940000163506.a.b.b ENSGT01030000234542.b.a.a.a.b.a.b.c.b.d ENSGT00940000154397.b.c.a.a.b ENSGT00940000161267.a.a ENSGT00640000091698 ENSGT00940000160873 ENSGT00950000182933.C.c Sooty mangabey MODERN SPECIES 228 ENSCATG00000035728 ZNF534 (ENSCATG00000040910) ZNF808 (ENSCATG00000036940) ZNF701 (ENSCATG00000036391) ENSCATG00000042143 ENSCATG00000038142 ZNF611 (ENSCATG00000036192) ZNF28 (ENSCATG00000035314) ZNF468 (ENSCATG00000041129) ZNF320 (ENSCATG00000042172) ZNF888 (ENSCATG00000042797) ZNF816 (ENSCATG00000043791) ENSCATG00000041731 ENSCATG00000011552 ENSCATG00000037519 ENSCATG00000038020 #21 ENSCATG00000019907 ZNF160 (ENSCATG00000037429) ZNF415 (ENSCATG00000031013) ZNF347 (ENSCATG00000017011) ZNF665 (ENSCATG00000030213) ZNF845 (ENSCATG00000032570) ZNF677 (ENSCATG00000014694) ENSCATG00000018509 ENSCATG00000039003 ENSCATG00000044235 ENSCATG00000036054 Drill MODERN SPECIES 107 ENSMLEG00000036760 ENSMLEG00000038583 ZNF28 (ENSMLEG00000041213) ZNF468 (ENSMLEG00000033227) ZNF320 (ENSMLEG00000011375) ZNF816 (ENSMLEG00000036926) ENSMLEG00000039752 ENSMLEG00000038242 #21 ZNF160 (ENSMLEG00000040642) ZNF415 (ENSMLEG00000041995) ZNF347 (ENSMLEG00000000049) ZNF665 (ENSMLEG00000034539) ZNF677 (ENSMLEG00000041413) ZNF845 (ENSMLEG00000044333) ENSMLEG00000038728 ENSMLEG00000044093 ZNF765 (ENSMLEG00000029793) ENSMLEG00000035663 ENSMLEG00000035014 ENSMLEG00000040211 ZNF813 (ENSMLEG00000030750) ZNF331 (ENSMLEG00000039708) DPRX (ENSMLEG00000033703) Macaca ANCESTRAL SPECIES 140 ENSGT00950000183183.b.a.y.a.a.a #21 ENSGT00940000164101.a.a Pig-tailed macaque MODERN SPECIES 248 ENSMNEG00000027858 ENSMNEG00000023583 ZNF808 (ENSMNEG00000043562) ENSMNEG00000035379 ENSMNEG00000028454 ZNF28 (ENSMNEG00000042815) ZNF468 (ENSMNEG00000041194) ENSMNEG00000045369 ZNF888 (ENSMNEG00000037271) ZNF816 (ENSMNEG00000030249) ENSMNEG00000030248 ENSMNEG00000031312 ZNF320 (ENSMNEG00000039739) ENSMNEG00000040503 ENSMNEG00000037266 ENSMNEG00000028956 #21 ENSMNEG00000039708 ZNF160 (ENSMNEG00000044441) ZNF415 (ENSMNEG00000032629) ZNF347 (ENSMNEG00000037350) ZNF665 (ENSMNEG00000011318) ZNF677 (ENSMNEG00000042310) ENSMNEG00000045225 ENSMNEG00000043419 ENSMNEG00000028876 ZNF331 (ENSMNEG00000039489) DPRX (ENSMNEG00000032869) NLRP12 (ENSMNEG00000035386) MYADM (ENSMNEG00000009444) PRKCG (ENSMNEG00000037765) CACNG7 (ENSMNEG00000029699) Macaca_a ANCESTRAL SPECIES 113 ENSGT00950000183183.b.a.y.a.a.a #21 ENSGT00940000164101.a.a Crab-eating macaque MODERN SPECIES 10 ZNF528 (ENSMFAG00000033276) ENSMFAG00000048794 ZNF808 (ENSMFAG00000007422) ZNF701 (ENSMFAG00000040866) ENSMFAG00000053536 ENSMFAG00000056370 ZNF83 (ENSMFAG00000032186) ENSMFAG00000062090 ENSMFAG00000003749 ZNF600 (ENSMFAG00000030933) ENSMFAG00000058557 ZNF28 (ENSMFAG00000053638) ENSMFAG00000061210 ENSMFAG00000056762 ZNF888 (ENSMFAG00000063010) ENSMFAG00000042950 #21 ENSMFAG00000042517 ENSMFAG00000059287 ZNF160 (ENSMFAG00000034454) ZNF415 (ENSMFAG00000040786) ZNF347 (ENSMFAG00000000482) ENSMFAG00000055607 ENSMFAG00000048343 ENSMFAG00000056716 ZNF845 (ENSMFAG00000065563) ZNF677 (ENSMFAG00000045486) ENSMFAG00000037611 ENSMFAG00000059402 ENSMFAG00000047620 ENSMFAG00000050411 ENSMFAG00000057747 Rhinopithecus ANCESTRAL SPECIES 384 ENSGT00940000165246.a ENSGT01090000260061.c.b.lg.b.a.b ENSGT00940000154397.b.c.a.b.b ENSGT00940000154397.b.c.a.b.a.b ENSGT00940000154397.b.c.b.a.b.d ENSGT00940000165358 ENSGT00950000183183.b.a.y.a.a.a #21 ENSGT00940000164101.a ENSGT00940000162609.a ENSGT00940000164638 ENSGT00940000164205 ENSGT00940000162609.b ENSGT00940000160770.B.b.a ENSGT00960000186612.B.a.b.a.b.a.b Golden snub-nosed monkey MODERN SPECIES 1971 ZNF528 (ENSRROG00000040325) ENSRROG00000033206 ENSRROG00000044123 ENSRROG00000035465 ZNF808 (ENSRROG00000009467) ZNF701 (ENSRROG00000045288) ENSRROG00000039436 ENSRROG00000030824 ZNF600 (ENSRROG00000037435) ENSRROG00000044423 ZNF468 (ENSRROG00000031174) ZNF28 (ENSRROG00000032344) ZNF888 (ENSRROG00000036532) ZNF816 (ENSRROG00000033377) ENSRROG00000030062 ENSRROG00000003713 #21 ENSRROG00000037022 ZNF160 (ENSRROG00000035317) ZNF415 (ENSRROG00000035150) ZNF347 (ENSRROG00000030294) ZNF665 (ENSRROG00000039874) ENSRROG00000045794 ZNF677 (ENSRROG00000037335) VN1R2 (ENSRROG00000012907) Black snub-nosed monkey MODERN SPECIES 1981 ZNF28 (ENSRBIG00000037464) ENSRBIG00000028532 ZNF468 (ENSRBIG00000037148) ENSRBIG00000032168 ZNF888 (ENSRBIG00000041848) ZNF816 (ENSRBIG00000036703) ENSRBIG00000028484 ENSRBIG00000036517 ENSRBIG00000031822 ENSRBIG00000035780 #21 ENSRBIG00000026527 ZNF160 (ENSRBIG00000032121) ZNF415 (ENSRBIG00000036406) ZNF347 (ENSRBIG00000032942) ZNF665 (ENSRBIG00000042059) Catarrhini ANCESTRAL SPECIES 7 ENSGT00940000155389 ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00940000154629.B.db.b.b ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b ENSGT00950000183076.b ENSGT01050000244840.A.a.b Hominoidea ANCESTRAL SPECIES 8 ENSGT00940000155389.k ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00940000154629.B.db.b.b ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b ENSGT00950000183076.b ENSGT01050000244840.A.a.b Hominidae ANCESTRAL SPECIES 7 ENSGT00940000155498 ENSGT00940000155389.k ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b ENSGT00950000183076.b ENSGT01050000244840.A.a.b Homo/Pan/Gorilla group ANCESTRAL SPECIES 7 ENSGT00950000182878.b.b.`b.a.a ENSGT00940000155389.k ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.b ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545.a ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b ENSGT00950000183076.b ENSGT01050000244840.A.a.b Homo/Pan group ANCESTRAL SPECIES 8 ENSGT00950000182878.b.b.`b.a.a ENSGT00940000155389.k ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.b ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545.a ENSGT00950000182940.b.b ENSGT01050000244840.A.b.b ENSGT00950000183076.b ENSGT01050000244840.A.a.b ENSGT01050000244840.A.a.a Pan ANCESTRAL SPECIES 21 ENSGT00940000155389.k ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00990000203720.a.b.b.a.a.a ENSGT00940000161645.a ENSGT00940000153288.a.b.a.b ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545.a ENSGT00950000182940.b.b ENSGT01050000244840.A.b.b ENSGT00950000183076.b ENSGT01050000244840.A.a.b ENSGT01050000244840.A.a.a Chimpanzee MODERN SPECIES 18 TNPO1 (ENSPTRG00000016972) ENSPTRG00000050315 FCHO2 (ENSPTRG00000016973) TMEM171 (ENSPTRG00000016977) TMEM174 (ENSPTRG00000016978) ENSPTRG00000051108 FOXD1 (ENSPTRG00000047627) BTF3 (ENSPTRG00000016979) ANKRA2 (ENSPTRG00000016981) UTP15 (ENSPTRG00000016982) ARHGEF28 (ENSPTRG00000034340) ENC1 (ENSPTRG00000016987) HEXB (ENSPTRG00000016988) GFM2 (ENSPTRG00000016989) NSA2 (ENSPTRG00000016990) ENSPTRG00000051667 #21 FAM169A (ENSPTRG00000016991) ENSPTRG00000044567 GCNT4 (ENSPTRG00000040943) ANKRD31 (ENSPTRG00000016993) HMGCR (ENSPTRG00000016994) CERT1 (ENSPTRG00000016996) POLK (ENSPTRG00000016997) ANKDD1B (ENSPTRG00000016998) POC5 (ENSPTRG00000016999) ENSPTRG00000051331 ENSPTRG00000044990 SV2C (ENSPTRG00000017000) ENSPTRG00000046035 F2RL2 (ENSPTRG00000017003) IQGAP2 (ENSPTRG00000017002) Bonobo MODERN SPECIES 18 ENSPPAG00000039984 TNPO1 (ENSPPAG00000042518) ENSPPAG00000028872 FCHO2 (ENSPPAG00000027023) TMEM171 (ENSPPAG00000031784) TMEM174 (ENSPPAG00000031226) ENSPPAG00000028226 BTF3 (ENSPPAG00000025817) ANKRA2 (ENSPPAG00000043347) UTP15 (ENSPPAG00000031829) ARHGEF28 (ENSPPAG00000027640) ENC1 (ENSPPAG00000026162) HEXB (ENSPPAG00000042905) GFM2 (ENSPPAG00000036359) NSA2 (ENSPPAG00000042622) ENSPPAG00000040994 #21 FAM169A (ENSPPAG00000042903) ENSPPAG00000041224 ENSPPAG00000035800 ANKRD31 (ENSPPAG00000033501) HMGCR (ENSPPAG00000034707) CERT1 (ENSPPAG00000042589) POLK (ENSPPAG00000026238) ANKDD1B (ENSPPAG00000039465) POC5 (ENSPPAG00000037734) ENSPPAG00000035826 ENSPPAG00000038410 SV2C (ENSPPAG00000042256) F2RL2 (ENSPPAG00000036549) IQGAP2 (ENSPPAG00000029477) F2R (ENSPPAG00000034950) Gorilla MODERN SPECIES 8 ZNF366 (ENSGGOG00000004981) ENSGGOG00000024772 TNPO1 (ENSGGOG00000026800) ENSGGOG00000022549 FCHO2 (ENSGGOG00000022902) TMEM171 (ENSGGOG00000004346) TMEM174 (ENSGGOG00000008689) ENSGGOG00000000166 ANKRA2 (ENSGGOG00000003298) UTP15 (ENSGGOG00000003301) ARHGEF28 (ENSGGOG00000015967) ENC1 (ENSGGOG00000003121) HEXB (ENSGGOG00000009296) GFM2 (ENSGGOG00000013739) NSA2 (ENSGGOG00000014365) ENSGGOG00000039925 #21 FAM169A (ENSGGOG00000003620) ENSGGOG00000040312 ENSGGOG00000041097 ENSGGOG00000023345 GCNT4 (ENSGGOG00000027775) ANKRD31 (ENSGGOG00000017052) HMGCR (ENSGGOG00000010919) CERT1 (ENSGGOG00000005049) POLK (ENSGGOG00000015644) ENSGGOG00000015099 POC5 (ENSGGOG00000015106) ENSGGOG00000039885 ENSGGOG00000042268 ENSGGOG00000039209 SV2C (ENSGGOG00000007723) Cercopithecidae ANCESTRAL SPECIES 5 ENSGT00940000155389 ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00940000154629.B.db.b.b ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00950000183076.b ENSGT01050000244840.A.b.b ENSGT01050000244840.A.a.b ENSGT01050000246082 Rhinopithecus ANCESTRAL SPECIES 114 ENSGT00940000155498 ENSGT00940000155389 ENSGT00940000157105 ENSGT00940000154629.B.db.b.b ENSGT00390000017024 ENSGT00390000004161 ENSGT00990000203720.a.b.b.a.b ENSGT00940000153288.a.b.a.b.m ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00390000005534.b.b.c.b.a.a.b.a.b ENSGT00940000159721 ENSGT00940000162618 Golden snub-nosed monkey MODERN SPECIES 611 FCHO2 (ENSRROG00000042058) TMEM171 (ENSRROG00000035606) TMEM174 (ENSRROG00000035675) ENSRROG00000044507 ENSRROG00000040820 ANKRA2 (ENSRROG00000036793) UTP15 (ENSRROG00000034462) ARHGEF28 (ENSRROG00000028997) ENC1 (ENSRROG00000027286) HEXB (ENSRROG00000042501) GFM2 (ENSRROG00000036459) NSA2 (ENSRROG00000037994) ENSRROG00000044209 #21 FAM169A (ENSRROG00000040140) ENSRROG00000002031 GCNT4 (ENSRROG00000036302) ANKRD31 (ENSRROG00000038255) Black snub-nosed monkey MODERN SPECIES 1015 TNPO1 (ENSRBIG00000021642) FCHO2 (ENSRBIG00000007669) ENSRBIG00000002036 TMEM171 (ENSRBIG00000037267) TMEM174 (ENSRBIG00000036025) ENSRBIG00000029002 ENSRBIG00000028164 ANKRA2 (ENSRBIG00000035499) UTP15 (ENSRBIG00000031078) ARHGEF28 (ENSRBIG00000042101) ENC1 (ENSRBIG00000003968) HEXB (ENSRBIG00000030473) GFM2 (ENSRBIG00000040962) NSA2 (ENSRBIG00000037875) FAM169A (ENSRBIG00000013278) ENSRBIG00000041343 #21 ENSRBIG00000043025 ENSRBIG00000038803 Cercopithecinae ANCESTRAL SPECIES 9 ENSGT00940000155498 ENSGT00940000155389 ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00950000183076.b ENSGT01050000244840.A.b.b ENSGT01050000244840.A.a.b ENSGT01050000246082 Cercopithecinae_a ANCESTRAL SPECIES 9 ENSGT00940000155389 ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00950000182802.B.a.a.a.a.h.b.b ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000005569.x.a.b.b.a.a ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b ENSGT00950000183076.b Macaca ANCESTRAL SPECIES 7 ENSGT00940000155389 ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00950000182802.B.a.a.a.a.h.b.b ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000005569.x.a.b.b.a.a ENSGT00390000004454 ENSGT00950000182940.b.b ENSGT00730000110997.k.b.a ENSGT00950000183076.b ENSGT01050000244840.A.b.b ENSGT01050000244840.A.a.b ENSGT01050000246082 Pig-tailed macaque MODERN SPECIES 533 TNPO1 (ENSMNEG00000044581) ENSMNEG00000029785 FCHO2 (ENSMNEG00000038505) TMEM171 (ENSMNEG00000042146) TMEM174 (ENSMNEG00000032405) ENSMNEG00000027924 FOXD1 (ENSMNEG00000043099) BTF3 (ENSMNEG00000044350) ANKRA2 (ENSMNEG00000030102) UTP15 (ENSMNEG00000032169) ARHGEF28 (ENSMNEG00000031568) ENC1 (ENSMNEG00000006975) HEXB (ENSMNEG00000036163) GFM2 (ENSMNEG00000034666) NSA2 (ENSMNEG00000042380) ENSMNEG00000031805 #21 FAM169A (ENSMNEG00000032139) ENSMNEG00000019915 ANKRD31 (ENSMNEG00000038747) HMGCR (ENSMNEG00000036782) CERT1 (ENSMNEG00000034301) ENSMNEG00000012143 POLK (ENSMNEG00000016543) ANKDD1B (ENSMNEG00000040050) ENSMNEG00000041053 POC5 (ENSMNEG00000028970) ENSMNEG00000029783 ENSMNEG00000039274 ENSMNEG00000035234 SV2C (ENSMNEG00000043938) F2RL2 (ENSMNEG00000028529) Cercopithecinae_b ANCESTRAL SPECIES 4 ENSGT00940000155389.j ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00950000182802.B.a.a.a.a.h.b.b ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000005569.x.a.b.b.a.a ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b ENSGT00950000183076.b Cercopithecinae_d ANCESTRAL SPECIES 48 ENSGT00940000155498 ENSGT00940000155389.j ENSGT01040000240503.B.eb.b ENSGT00940000157105 ENSGT00390000017024 ENSGT00390000004161 ENSGT00940000161645.a ENSGT00940000153288.a.b.a.a ENSGT00940000157156 ENSGT00390000004228 ENSGT00940000155831 ENSGT00950000182983.B.a.b ENSGT00390000008107.c.a ENSGT00550000074890 ENSGT00390000018706.m.b.a ENSGT00950000183183.b.a.y.a.a.b #21 ENSGT00510000048902.a ENSGT00390000005534.b.b.c.a ENSGT00940000159721 ENSGT00940000162618 ENSGT00940000155305 ENSGT00940000155123.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00390000005569.x.a.b.b.a.a ENSGT00390000004454 ENSGT00940000165612 ENSGT00940000164545 ENSGT00950000182940.b.b ENSGT00910000147370 ENSGT01050000244840.A.b.b Sooty mangabey MODERN SPECIES 296 ZNF366 (ENSCATG00000040573) ENSCATG00000043792 ENSCATG00000044660 FCHO2 (ENSCATG00000034829) TMEM171 (ENSCATG00000042228) TMEM174 (ENSCATG00000036156) FOXD1 (ENSCATG00000017156) BTF3 (ENSCATG00000014918) ANKRA2 (ENSCATG00000030220) UTP15 (ENSCATG00000008006) ARHGEF28 (ENSCATG00000010807) ENC1 (ENSCATG00000017777) HEXB (ENSCATG00000030875) GFM2 (ENSCATG00000036394) NSA2 (ENSCATG00000025984) ENSCATG00000044383 #21 FAM169A (ENSCATG00000040937) ENSCATG00000041782 GCNT4 (ENSCATG00000016075) ANKRD31 (ENSCATG00000029258) HMGCR (ENSCATG00000014646) CERT1 (ENSCATG00000037646) ENSCATG00000019819 POLK (ENSCATG00000014199) ANKDD1B (ENSCATG00000040088) ENSCATG00000039793 POC5 (ENSCATG00000044188) ENSCATG00000033028 ENSCATG00000038048 ENSCATG00000004582 ENSCATG00000039111 Drill MODERN SPECIES 197 TNPO1 (ENSMLEG00000030740) ENSMLEG00000031650 FCHO2 (ENSMLEG00000042403) TMEM171 (ENSMLEG00000043574) TMEM174 (ENSMLEG00000040536) ENSMLEG00000026788 BTF3 (ENSMLEG00000037682) ANKRA2 (ENSMLEG00000031536) UTP15 (ENSMLEG00000038816) ARHGEF28 (ENSMLEG00000021822) ENC1 (ENSMLEG00000021735) HEXB (ENSMLEG00000037337) GFM2 (ENSMLEG00000038075) NSA2 (ENSMLEG00000035058) ENSMLEG00000032772 #21 FAM169A (ENSMLEG00000034747) ENSMLEG00000013497 ENSMLEG00000038467 GCNT4 (ENSMLEG00000027356) ANKRD31 (ENSMLEG00000037468) HMGCR (ENSMLEG00000030530) CERT1 (ENSMLEG00000042639) ENSMLEG00000006839 POLK (ENSMLEG00000042768) ANKDD1B (ENSMLEG00000029848) ENSMLEG00000031391 POC5 (ENSMLEG00000039781) ENSMLEG00000039763 ENSMLEG00000040235 SV2C (ENSMLEG00000000294) Catarrhini ANCESTRAL SPECIES 6 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713.c #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n #23 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 Cercopithecidae ANCESTRAL SPECIES 11 ENSGT00940000159899 #7 ENSGT00940000170143 ENSGT00390000004713.c #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.d #27 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 Cercopithecinae ANCESTRAL SPECIES 8 ENSGT00390000004713.c.g #8 ENSGT00940000170143 ENSGT00390000004713.c.h #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.b #27 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 Cercopithecinae_a ANCESTRAL SPECIES 8 ENSGT00390000004713.c.g #8 ENSGT00940000170143 ENSGT00390000004713.c.h #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.b #27 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 Macaca ANCESTRAL SPECIES 3 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.c.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.a.b #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.c.b ##34 Macaca_a ANCESTRAL SPECIES 7 ENSGT00940000158475 #10 ENSGT00510000047886.a #12 ENSGT00940000167990.a ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT01100000263539.b.a.a.a.a.b.a.b.b.a.d.a ENSGT00950000183188.A.b #17 ENSGT01080000257579.b.b.b.a.b ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT01100000263539.b.a.a.a.a.a.a.a.b.b.b.a.b.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.c.b #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##34 Crab-eating macaque MODERN SPECIES 13 ENSMFAG00000035825 #8 ENSMFAG00000047484 #9 ENSMFAG00000059369 ENSMFAG00000049779 ENSMFAG00000036994 BAIAP2L1 (ENSMFAG00000037269) #14 NPTX2 (ENSMFAG00000039583) #16 ENSMFAG00000047721 TMEM130 (ENSMFAG00000040311) #17 ENSMFAG00000063130 TRRAP (ENSMFAG00000039475) #18 SMURF1 (ENSMFAG00000033436) #19 KPNA7 (ENSMFAG00000031709) #20 ENSMFAG00000062641 ENSMFAG00000052918 ARPC1A (ENSMFAG00000003138) #21 ARPC1B (ENSMFAG00000046299) #22 ENSMFAG00000053643 ENSMFAG00000003092 #23 BUD31 (ENSMFAG00000035579) #24 PTCD1 (ENSMFAG00000041324) ENSMFAG00000051467 CPSF4 (ENSMFAG00000001462) #26 ENSMFAG00000036062 #27 ZNF789 (ENSMFAG00000041302) ZNF394 (ENSMFAG00000045342) #28 ZKSCAN5 (ENSMFAG00000037519) #30 FAM200A (ENSMFAG00000030317) ZNF655 (ENSMFAG00000037712) #31 TMEM225B (ENSMFAG00000045372) ZSCAN25 (ENSMFAG00000046015) #32 Rhesus MODERN SPECIES 13 ENSMMUG00000064257 ENSMMUG00000054767 LMTK2 (ENSMMUG00000015477) #10 TECPR1 (ENSMMUG00000015479) #12 BRI3 (ENSMMUG00000049558) BAIAP2L1 (ENSMMUG00000013276) #14 NPTX2 (ENSMMUG00000011970) #16 ENSMMUG00000059873 TMEM130 (ENSMMUG00000012377) #17 ENSMMUG00000055827 TRRAP (ENSMMUG00000023318) #18 SMURF1 (ENSMMUG00000009183) #19 ENSMMUG00000054851 KPNA7 (ENSMMUG00000019445) #20 ENSMMUG00000056270 ARPC1A (ENSMMUG00000001458) #21 PDAP1 (ENSMMUG00000001460) #23 BUD31 (ENSMMUG00000000427) #24 PTCD1 (ENSMMUG00000030408) CPSF4 (ENSMMUG00000019191) #26 ZNF789 (ENSMMUG00000020139) ZNF394 (ENSMMUG00000020140) #28 ZKSCAN5 (ENSMMUG00000020141) #30 FAM200A (ENSMMUG00000019104) ZNF655 (ENSMMUG00000040393) #31 TMEM225B (ENSMMUG00000055483) ZSCAN25 (ENSMMUG00000022728) #32 CYP3A7 (ENSMMUG00000022730) ##34 ENSMMUG00000060678 ENSMMUG00000050824 CYP3A43 (ENSMMUG00000022490) ##34 Pig-tailed macaque MODERN SPECIES 80 PMS2 (ENSMNEG00000039965) ENSMNEG00000034328 #7 ENSMNEG00000031130 #8 ENSMNEG00000036828 #9 LMTK2 (ENSMNEG00000038154) #10 BHLHA15 (ENSMNEG00000021350) #11 TECPR1 (ENSMNEG00000039715) #12 BRI3 (ENSMNEG00000000029) #13 BAIAP2L1 (ENSMNEG00000027564) #14 NPTX2 (ENSMNEG00000031035) #16 TMEM130 (ENSMNEG00000034143) #17 TRRAP (ENSMNEG00000011245) #18 SMURF1 (ENSMNEG00000030527) #19 KPNA7 (ENSMNEG00000043325) #20 ENSMNEG00000043344 ARPC1A (ENSMNEG00000045309) #21 ARPC1B (ENSMNEG00000032941) #22 ENSMNEG00000038469 #23 BUD31 (ENSMNEG00000034239) #24 PTCD1 (ENSMNEG00000043786) CPSF4 (ENSMNEG00000032306) #26 ENSMNEG00000044753 #27 ZNF394 (ENSMNEG00000044404) #28 ZNF789 (ENSMNEG00000034945) ZKSCAN5 (ENSMNEG00000036993) #30 FAM200A (ENSMNEG00000009524) ZNF655 (ENSMNEG00000032786) #31 TMEM225B (ENSMNEG00000039756) ZSCAN25 (ENSMNEG00000026859) #32 CYP3A5 (ENSMNEG00000029025) ##34 ENSMNEG00000019082 ##34 Cercopithecinae_b ANCESTRAL SPECIES 36 ENSGT00940000159899 #7 ENSGT00390000004713.c.g #8 ENSGT00390000004713.c.h #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 Olive baboon MODERN SPECIES 14 ENSPANG00000009446 #9 ENSPANG00000051135 ENSPANG00000008247 #7 ENSPANG00000035903 ENSPANG00000033390 #9 LMTK2 (ENSPANG00000023289) #10 BHLHA15 (ENSPANG00000010823) #11 TECPR1 (ENSPANG00000020539) #12 BRI3 (ENSPANG00000015667) #13 BAIAP2L1 (ENSPANG00000024563) #14 NPTX2 (ENSPANG00000009445) #16 TMEM130 (ENSPANG00000009013) #17 TRRAP (ENSPANG00000006931) #18 SMURF1 (ENSPANG00000023126) #19 KPNA7 (ENSPANG00000021499) #20 ARPC1A (ENSPANG00000032757) #21 ARPC1B (ENSPANG00000023245) #22 ENSPANG00000025132 #23 BUD31 (ENSPANG00000006779) #24 PTCD1 (ENSPANG00000016730) CPSF4 (ENSPANG00000023123) #26 ENSPANG00000030778 #27 ENSPANG00000009919 #28 ZNF789 (ENSPANG00000009920) ZKSCAN5 (ENSPANG00000000548) #30 FAM200A (ENSPANG00000018803) ENSPANG00000018842 TMEM225B (ENSPANG00000008632) ZSCAN25 (ENSPANG00000023896) #32 CYP3A5 (ENSPANG00000023122) ##34 CYP3A7 (ENSPANG00000008155) ##34 Cercopithecinae_d ANCESTRAL SPECIES 75 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.c.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.c.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 Sooty mangabey MODERN SPECIES 630 ENSCATG00000034408 #7 ENSCATG00000011606 #8 ENSCATG00000042940 #9 LMTK2 (ENSCATG00000037130) #10 ENSCATG00000017491 BHLHA15 (ENSCATG00000021737) #11 TECPR1 (ENSCATG00000043836) #12 BRI3 (ENSCATG00000039656) #13 BAIAP2L1 (ENSCATG00000033297) #14 NPTX2 (ENSCATG00000035885) #16 TMEM130 (ENSCATG00000034901) #17 TRRAP (ENSCATG00000032049) #18 SMURF1 (ENSCATG00000019164) #19 KPNA7 (ENSCATG00000016098) #20 ENSCATG00000045237 ARPC1A (ENSCATG00000034511) #21 ARPC1B (ENSCATG00000037261) #22 ENSCATG00000037918 #23 BUD31 (ENSCATG00000042456) #24 PTCD1 (ENSCATG00000040859) CPSF4 (ENSCATG00000038440) #26 ENSCATG00000030778 ENSCATG00000040640 #27 ZNF789 (ENSCATG00000042095) ZNF394 (ENSCATG00000042636) #28 ZKSCAN5 (ENSCATG00000043807) #30 FAM200A (ENSCATG00000007135) ZNF655 (ENSCATG00000041092) #31 TMEM225B (ENSCATG00000038153) ZSCAN25 (ENSCATG00000010757) #32 CYP3A7 (ENSCATG00000036704) ##34 Drill MODERN SPECIES 930 ENSMLEG00000039444 ENSMLEG00000030927 #7 ENSMLEG00000030378 #8 ENSMLEG00000037262 #9 LMTK2 (ENSMLEG00000033242) #10 BHLHA15 (ENSMLEG00000005175) #11 TECPR1 (ENSMLEG00000033546) #12 BRI3 (ENSMLEG00000038264) #13 BAIAP2L1 (ENSMLEG00000030011) #14 NPTX2 (ENSMLEG00000034636) #16 TMEM130 (ENSMLEG00000024016) #17 TRRAP (ENSMLEG00000020926) #18 SMURF1 (ENSMLEG00000041278) #19 KPNA7 (ENSMLEG00000041680) #20 ENSMLEG00000036464 ARPC1A (ENSMLEG00000031614) #21 ENSMLEG00000041405 #22 ENSMLEG00000031168 #22 ENSMLEG00000029041 #23 BUD31 (ENSMLEG00000035118) #24 PTCD1 (ENSMLEG00000031179) CPSF4 (ENSMLEG00000034721) #26 ATP5MF (ENSMLEG00000043000) #27 ZNF394 (ENSMLEG00000040037) #28 ZNF789 (ENSMLEG00000041142) ZKSCAN5 (ENSMLEG00000034683) #30 FAM200A (ENSMLEG00000001071) ZNF655 (ENSMLEG00000041871) #31 TMEM225B (ENSMLEG00000037236) ZSCAN25 (ENSMLEG00000006141) #32 CYP3A5 (ENSMLEG00000042908) ##34 Rhinopithecus ANCESTRAL SPECIES 46 ENSGT00390000017980.hb ENSGT00910000148510 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b.`b #22 ENSGT00390000018509.a.m #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.n.a.d.d #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.i.b.a ##34 ENSGT00950000182958.a.b.b.i.b.b.c.b.c ##34 Black snub-nosed monkey MODERN SPECIES 191 ENSRBIG00000035402 ZNF701 (ENSRBIG00000038188) ENSRBIG00000028970 ENSRBIG00000037488 ENSRBIG00000037978 RORA (ENSRBIG00000022050) ICE2 (ENSRBIG00000030556) ENSRBIG00000029223 ANXA2 (ENSRBIG00000041394) NPTX2 (ENSRBIG00000037271) #16 TMEM130 (ENSRBIG00000038360) #17 TRRAP (ENSRBIG00000043840) #18 SMURF1 (ENSRBIG00000035136) #19 KPNA7 (ENSRBIG00000032648) #20 ENSRBIG00000026342 ARPC1A (ENSRBIG00000034019) #21 ARPC1B (ENSRBIG00000022904) #22 Golden snub-nosed monkey MODERN SPECIES 1891 TMEM130 (ENSRROG00000041705) #17 TRRAP (ENSRROG00000038566) #18 SMURF1 (ENSRROG00000033605) #19 KPNA7 (ENSRROG00000038253) #20 ENSRROG00000029302 ARPC1A (ENSRROG00000034397) #21 ENSRROG00000039173 #22 ENSRROG00000040014 #23 BUD31 (ENSRROG00000036579) #24 PTCD1 (ENSRROG00000036420) CPSF4 (ENSRROG00000040431) #26 ENSRROG00000035599 #27 ZNF789 (ENSRROG00000024718) ZNF394 (ENSRROG00000034088) #28 ZKSCAN5 (ENSRROG00000034392) #30 FAM200A (ENSRROG00000018629) ZNF655 (ENSRROG00000044389) #31 TMEM225B (ENSRROG00000025234) ZSCAN25 (ENSRROG00000043347) #32 CYP3A5 (ENSRROG00000032359) ##34 ENSRROG00000042643 ##34 Hominoidea ANCESTRAL SPECIES 6 ENSGT00940000162728 ENSGT00940000154303.B ENSGT00390000004713.d #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a Gibbon MODERN SPECIES 7 ENSNLEG00000000939 ENSNLEG00000035464 LMTK2 (ENSNLEG00000010627) #10 ENSNLEG00000027958 BHLHA15 (ENSNLEG00000018875) #11 TECPR1 (ENSNLEG00000010642) #12 ENSNLEG00000012944 ENSNLEG00000035321 #13 BAIAP2L1 (ENSNLEG00000033877) #14 ENSNLEG00000010697 #16 TMEM130 (ENSNLEG00000010699) #17 TRRAP (ENSNLEG00000027081) #18 SMURF1 (ENSNLEG00000010717) #19 KPNA7 (ENSNLEG00000010827) #20 ENSNLEG00000032444 ARPC1A (ENSNLEG00000010852) #21 ENSNLEG00000026790 #22 PDAP1 (ENSNLEG00000011017) #23 BUD31 (ENSNLEG00000011020) #24 PTCD1 (ENSNLEG00000011060) ENSNLEG00000011100 CPSF4 (ENSNLEG00000011074) #26 ATP5MF (ENSNLEG00000011101) #27 ZNF789 (ENSNLEG00000011123) ZNF394 (ENSNLEG00000035314) #28 ZKSCAN5 (ENSNLEG00000011141) #30 FAM200A (ENSNLEG00000011174) ZNF655 (ENSNLEG00000030892) #31 TMEM225B (ENSNLEG00000011185) ZSCAN25 (ENSNLEG00000029330) #32 ENSNLEG00000032867 Hominidae ANCESTRAL SPECIES 26 ENSGT00940000153253.b.a.g ENSGT00940000155974.i.a ENSGT00390000004713.d #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a Orangutan MODERN SPECIES 20 INTS15 (ENSPPYG00000017353) ZNF853 (ENSPPYG00000040545) ZNF316 (ENSPPYG00000033506) ZNF12 (ENSPPYG00000030303) ENSPPYG00000017340 #9 LMTK2 (ENSPPYG00000017360) #10 BHLHA15 (ENSPPYG00000017361) #11 TECPR1 (ENSPPYG00000017362) #12 ENSPPYG00000037940 #13 BAIAP2L1 (ENSPPYG00000017363) #14 NPTX2 (ENSPPYG00000029795) #16 TMEM130 (ENSPPYG00000017365) #17 TRRAP (ENSPPYG00000017366) #18 SMURF1 (ENSPPYG00000017368) #19 KPNA7 (ENSPPYG00000017369) #20 ARPC1A (ENSPPYG00000025816) #21 ARPC1B (ENSPPYG00000017374) #22 ENSPPYG00000017375 #23 BUD31 (ENSPPYG00000017376) #24 PTCD1 (ENSPPYG00000017377) CPSF4 (ENSPPYG00000017378) #26 ENSPPYG00000041797 ATP5MF (ENSPPYG00000017379) #27 ZNF789 (ENSPPYG00000041347) ZNF394 (ENSPPYG00000017381) #28 ZKSCAN5 (ENSPPYG00000017382) #30 FAM200A (ENSPPYG00000017383) ZNF655 (ENSPPYG00000017384) #31 TMEM225B (ENSPPYG00000033654) ZSCAN25 (ENSPPYG00000034484) #32 CYP3A5 (ENSPPYG00000034419) ##34 Homo/Pan/Gorilla group ANCESTRAL SPECIES 15 ENSGT00390000001994.u ENSGT00390000004713.d.a #8 ENSGT00940000161875.c.b #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a Gorilla MODERN SPECIES 20 ASNS (ENSGGOG00000005662) ENSGGOG00000038206 #8 OCM2 (ENSGGOG00000022595) #9 LMTK2 (ENSGGOG00000003052) #10 TECPR1 (ENSGGOG00000003065) #12 ENSGGOG00000009646 #13 BAIAP2L1 (ENSGGOG00000022920) #14 ENSGGOG00000023648 NPTX2 (ENSGGOG00000014713) #16 TMEM130 (ENSGGOG00000016665) #17 TRRAP (ENSGGOG00000002928) #18 SMURF1 (ENSGGOG00000011481) #19 KPNA7 (ENSGGOG00000000414) #20 ENSGGOG00000016797 ENSGGOG00000036592 #21 ARPC1A (ENSGGOG00000039217) #21 ARPC1B (ENSGGOG00000013186) #22 PDAP1 (ENSGGOG00000025196) #23 BUD31 (ENSGGOG00000015119) #24 ENSGGOG00000041309 PTCD1 (ENSGGOG00000015123) CPSF4 (ENSGGOG00000015131) #26 ATP5MF (ENSGGOG00000037236) #27 ENSGGOG00000022768 ZNF394 (ENSGGOG00000013650) #28 ZKSCAN5 (ENSGGOG00000009555) #30 FAM200A (ENSGGOG00000001350) ZNF655 (ENSGGOG00000002488) #31 TMEM225B (ENSGGOG00000040673) ZSCAN25 (ENSGGOG00000016950) #32 CYP3A5 (ENSGGOG00000003875) ##34 Homo/Pan group ANCESTRAL SPECIES 15 ENSGT00390000001994.u ENSGT00390000004713.d.a #8 ENSGT00940000161875.c.b #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a Pan ANCESTRAL SPECIES 13 ENSGT00390000002457 ENSGT00390000001994.u ENSGT00390000004713.d.a #8 ENSGT00940000161875.c.b #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486.g.a #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a.y.a.b #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a.n.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00390000002944.e.b ENSGT00510000046986.n.a.a.a #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00940000164024 ENSGT00760000119441.a #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000156593.wc.a Bonobo MODERN SPECIES 20 SDHAF3 (ENSPPAG00000037725) TAC1 (ENSPPAG00000033152) ASNS (ENSPPAG00000033201) ENSPPAG00000027488 #8 LMTK2 (ENSPPAG00000032735) #10 BHLHA15 (ENSPPAG00000038305) #11 TECPR1 (ENSPPAG00000036532) #12 ENSPPAG00000031565 #13 BAIAP2L1 (ENSPPAG00000037144) #14 ENSPPAG00000032935 #16 TMEM130 (ENSPPAG00000016661) #17 TRRAP (ENSPPAG00000036292) #18 SMURF1 (ENSPPAG00000031727) #19 KPNA7 (ENSPPAG00000040756) #20 ENSPPAG00000032160 ARPC1A (ENSPPAG00000032222) #21 ARPC1B (ENSPPAG00000029449) #22 PDAP1 (ENSPPAG00000031378) #23 BUD31 (ENSPPAG00000040700) #24 PTCD1 (ENSPPAG00000036024) CPSF4 (ENSPPAG00000043355) #26 ENSPPAG00000042587 ATP5MF (ENSPPAG00000036976) #27 ZNF789 (ENSPPAG00000040508) ZNF394 (ENSPPAG00000036746) #28 ZKSCAN5 (ENSPPAG00000035814) #30 FAM200A (ENSPPAG00000025979) ZNF655 (ENSPPAG00000041610) #31 TMEM225B (ENSPPAG00000040983) ZSCAN25 (ENSPPAG00000043285) #32 ENSPPAG00000035255 Chimpanzee MODERN SPECIES 20 ASNS (ENSPTRG00000019429) ENSPTRG00000046532 #8 OCM2 (ENSPTRG00000019432) #9 LMTK2 (ENSPTRG00000019433) #10 BHLHA15 (ENSPTRG00000019434) #11 TECPR1 (ENSPTRG00000028478) #12 BRI3 (ENSPTRG00000019436) #13 BAIAP2L1 (ENSPTRG00000019438) #14 ENSPTRG00000049708 NPTX2 (ENSPTRG00000019440) #16 TMEM130 (ENSPTRG00000045055) #17 TRRAP (ENSPTRG00000019442) #18 SMURF1 (ENSPTRG00000019444) #19 KPNA7 (ENSPTRG00000019446) #20 MYH16 (ENSPTRG00000052047) ARPC1A (ENSPTRG00000033819) #21 ARPC1B (ENSPTRG00000019449) #22 PDAP1 (ENSPTRG00000041711) #23 BUD31 (ENSPTRG00000019451) #24 PTCD1 (ENSPTRG00000019452) CPSF4 (ENSPTRG00000019453) #26 ENSPTRG00000046696 ATP5MF (ENSPTRG00000044099) #27 ZNF789 (ENSPTRG00000023303) ZNF394 (ENSPTRG00000019456) #28 ZKSCAN5 (ENSPTRG00000019455) #30 FAM200A (ENSPTRG00000042511) ZNF655 (ENSPTRG00000048790) #31 TMEM225B (ENSPTRG00000043828) ZSCAN25 (ENSPTRG00000023744) #32 ENSPTRG00000047408 Human MODERN SPECIES 19 SDHAF3 (ENSG00000196636) TAC1 (ENSG00000006128) ASNS (ENSG00000070669) OCM2 (ENSG00000135175) #9 LMTK2 (ENSG00000164715) #10 BHLHA15 (ENSG00000180535) #11 TECPR1 (ENSG00000205356) #12 BRI3 (ENSG00000164713) #13 BAIAP2L1 (ENSG00000006453) #14 NPTX2 (ENSG00000106236) #16 TMEM130 (ENSG00000166448) #17 TRRAP (ENSG00000196367) #18 SMURF1 (ENSG00000198742) #19 KPNA7 (ENSG00000185467) #20 ENSG00000284292 ARPC1A (ENSG00000241685) #21 ARPC1B (ENSG00000130429) #22 PDAP1 (ENSG00000106244) #23 BUD31 (ENSG00000106245) #24 PTCD1 (ENSG00000106246) ATP5MF-PTCD1 (ENSG00000248919) CPSF4 (ENSG00000160917) #26 ATP5MF (ENSG00000241468) #27 ZNF789 (ENSG00000198556) ZNF394 (ENSG00000160908) #28 ZKSCAN5 (ENSG00000196652) #30 FAM200A (ENSG00000221909) ZNF655 (ENSG00000197343) #31 TMEM225B (ENSG00000244219) ZSCAN25 (ENSG00000197037) #32 CYP3A5 (ENSG00000106258) ##34 Catarrhini ANCESTRAL SPECIES ENSGT00950000183183.b.a.y.b #21 Hominoidea ANCESTRAL SPECIES 10 ENSGT00940000162658.a.b ENSGT00910000147952 ENSGT00940000160729 ENSGT00940000159025 ENSGT00390000002509 ENSGT00390000010702 ENSGT00390000002485 ENSGT00730000111375 ENSGT00730000111489 ENSGT00510000046787.e.a ENSGT00390000017405 ENSGT00940000160856 ENSGT00940000161743 ENSGT00940000157583 ENSGT00950000182974.a.b ENSGT00950000183183.b.a.y.b #21 ENSGT00390000015549 ENSGT00940000169357 ENSGT00950000182808.a.a.a.a.b ENSGT00940000155133.b ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a ENSGT00910000147934 ENSGT00530000063424.b.d ENSGT00940000159471.c.b ENSGT00390000003791.g.b ENSGT00940000157350 Hominidae ANCESTRAL SPECIES 12 ENSGT00940000162658.a.b ENSGT00910000147952 ENSGT00940000160729 ENSGT00940000159025 ENSGT00390000002509 ENSGT00390000010702 ENSGT00390000002485 ENSGT00730000111375 ENSGT00730000111489 ENSGT00510000046787.e.a ENSGT00390000017405 ENSGT00940000160856 ENSGT00940000161743 ENSGT00940000157583 ENSGT00950000182974.a.b ENSGT00950000183183.b.a.y.b #21 ENSGT00390000015549 ENSGT00940000169357 ENSGT00950000182808.a.a.a.a.b ENSGT00940000155133.b ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a ENSGT00910000147934 ENSGT00530000063424.b.d ENSGT00940000159471.c.b ENSGT00390000003791.g.b ENSGT00940000157350 Homo/Pan/Gorilla group ANCESTRAL SPECIES 11 ENSGT00910000147952 ENSGT00940000160729 ENSGT00940000159025 ENSGT00390000002509 ENSGT00390000010702 ENSGT00390000002485 ENSGT00730000111375 ENSGT00730000111489 ENSGT00510000046787.e.a ENSGT00390000017405 ENSGT00940000160856 ENSGT00940000161743 ENSGT00940000153112.A ENSGT00940000157583 ENSGT00950000182974.a.b ENSGT00950000183183.b.a.y.b #21 ENSGT00390000015549 ENSGT00940000169357 ENSGT00950000182808.a.a.a.a.b ENSGT00940000155133.b ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a ENSGT00910000147934 ENSGT00530000063424.b.d ENSGT00940000159471.c.b ENSGT00390000003791.g.b ENSGT00940000157350 Homo/Pan group ANCESTRAL SPECIES 10 ENSGT00910000147952 ENSGT00940000159025 ENSGT00390000002509 ENSGT01020000230401.a.a.a.i.a.a ENSGT00390000010702 ENSGT00390000002485 ENSGT00730000111375 ENSGT00730000111489 ENSGT00510000046787.e.a ENSGT00390000017405 ENSGT00940000160856 ENSGT00940000161743 ENSGT00940000153112.A ENSGT00940000157583 ENSGT00950000182974.a.b ENSGT00950000183183.b.a.y.b #21 ENSGT00390000015549 ENSGT00940000169357 ENSGT00950000182808.a.a.a.a.b ENSGT00940000155133.b ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a ENSGT00910000147934 ENSGT00530000063424.b.d ENSGT00940000159471.c.b ENSGT00390000003791.g.b ENSGT00940000157350 Pan ANCESTRAL SPECIES 7 ENSGT00910000147952 ENSGT00940000159025 ENSGT00390000002509 ENSGT01020000230401.a.a.a.i.a.a ENSGT00390000010702 ENSGT00390000002485 ENSGT00730000111375 ENSGT00730000111489 ENSGT00510000046787.e.a ENSGT00390000017405 ENSGT00940000160856 ENSGT00940000161743 ENSGT00940000153112.A ENSGT00940000157583 ENSGT00950000182974.a.b ENSGT00950000183183.b.a.y.b #21 ENSGT00390000015549 ENSGT00940000169357 ENSGT00950000182808.a.a.a.a.b ENSGT00940000155133.b ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000160193 ENSGT00940000157266 ENSGT00390000012178.h ENSGT00940000159024 ENSGT00940000154245.B ENSGT00390000018121 ENSGT00940000156728 ENSGT00910000144184.q.b.b.a.a ENSGT00940000157103 Chimpanzee MODERN SPECIES 17 ABCG2 (ENSPTRG00000016270) PKD2 (ENSPTRG00000016267) SPP1 (ENSPTRG00000016266) ENSPTRG00000048010 MEPE (ENSPTRG00000016264) IBSP (ENSPTRG00000016263) DMP1 (ENSPTRG00000016262) DSPP (ENSPTRG00000016261) SPARCL1 (ENSPTRG00000016260) NUDT9 (ENSPTRG00000016259) HSD17B11 (ENSPTRG00000022658) HSD17B13 (ENSPTRG00000016258) ENSPTRG00000046435 KLHL8 (ENSPTRG00000016256) AFF1 (ENSPTRG00000016255) ENSPTRG00000050251 #21 C4H4orf36 (ENSPTRG00000016254) ENSPTRG00000043177 SLC10A6 (ENSPTRG00000016253) PTPN13 (ENSPTRG00000016249) MAPK10 (ENSPTRG00000016244) ARHGAP24 (ENSPTRG00000016243) GABRG1 (ENSPTRG00000016024) GABRA2 (ENSPTRG00000016026) COX7B2 (ENSPTRG00000016027) GABRA4 (ENSPTRG00000016029) GABRB1 (ENSPTRG00000016030) COMMD8 (ENSPTRG00000016031) ATP10D (ENSPTRG00000016032) ENSPTRG00000052754 CORIN (ENSPTRG00000016034) Bonobo MODERN SPECIES 17 PPM1K (ENSPPAG00000042478) ABCG2 (ENSPPAG00000024257) ENSPPAG00000012455 PKD2 (ENSPPAG00000031097) SPP1 (ENSPPAG00000040172) ENSPPAG00000031090 MEPE (ENSPPAG00000041299) IBSP (ENSPPAG00000038769) DMP1 (ENSPPAG00000040896) SPARCL1 (ENSPPAG00000033615) NUDT9 (ENSPPAG00000042541) HSD17B11 (ENSPPAG00000013061) HSD17B13 (ENSPPAG00000042548) KLHL8 (ENSPPAG00000030051) AFF1 (ENSPPAG00000029196) ENSPPAG00000028030 #21 C4orf36 (ENSPPAG00000043538) ENSPPAG00000037218 SLC10A6 (ENSPPAG00000007271) PTPN13 (ENSPPAG00000037012) MAPK10 (ENSPPAG00000042829) ARHGAP24 (ENSPPAG00000036857) GABRG1 (ENSPPAG00000027800) GABRA2 (ENSPPAG00000028343) COX7B2 (ENSPPAG00000017844) GABRA4 (ENSPPAG00000041491) GABRB1 (ENSPPAG00000041178) COMMD8 (ENSPPAG00000033705) ATP10D (ENSPPAG00000012322) ENSPPAG00000030943 CORIN (ENSPPAG00000032757) Gorilla MODERN SPECIES 17 ENSGGOG00000002002 PKD2 (ENSGGOG00000003323) SPP1 (ENSGGOG00000005577) ENSGGOG00000006185 MEPE (ENSGGOG00000009745) IBSP (ENSGGOG00000007024) DMP1 (ENSGGOG00000026902) DSPP (ENSGGOG00000024325) SPARCL1 (ENSGGOG00000015425) NUDT9 (ENSGGOG00000014777) HSD17B11 (ENSGGOG00000014710) HSD17B13 (ENSGGOG00000002954) ENSGGOG00000022570 KLHL8 (ENSGGOG00000014648) AFF1 (ENSGGOG00000008497) ENSGGOG00000037353 #21 C4orf36 (ENSGGOG00000005547) SLC10A6 (ENSGGOG00000007512) PTPN13 (ENSGGOG00000025765) MAPK10 (ENSGGOG00000003141) ARHGAP24 (ENSGGOG00000006266) WDFY3 (ENSGGOG00000006370) CDS1 (ENSGGOG00000002418) NKX6-1 (ENSGGOG00000008459) ENSGGOG00000028145 ENSGGOG00000026515 GPAT3 (ENSGGOG00000004211) ENSGGOG00000024919 ABRAXAS1 (ENSGGOG00000005818) MRPS18C (ENSGGOG00000008603) HELQ (ENSGGOG00000008598) Gibbon MODERN SPECIES 24 PPM1K (ENSNLEG00000009677) ENSNLEG00000009615 PKD2 (ENSNLEG00000009602) SPP1 (ENSNLEG00000009599) ENSNLEG00000032534 MEPE (ENSNLEG00000009593) IBSP (ENSNLEG00000009587) DMP1 (ENSNLEG00000009581) DSPP (ENSNLEG00000009572) SPARCL1 (ENSNLEG00000009544) NUDT9 (ENSNLEG00000032434) HSD17B11 (ENSNLEG00000033296) HSD17B13 (ENSNLEG00000009489) KLHL8 (ENSNLEG00000009463) AFF1 (ENSNLEG00000009429) ENSNLEG00000027926 #21 C4orf36 (ENSNLEG00000030589) ENSNLEG00000033518 SLC10A6 (ENSNLEG00000009412) PTPN13 (ENSNLEG00000009323) MAPK10 (ENSNLEG00000009285) ARHGAP24 (ENSNLEG00000009269) WDFY3 (ENSNLEG00000009171) CDS1 (ENSNLEG00000009160) ENSNLEG00000028024 NKX6-1 (ENSNLEG00000009157) GPAT3 (ENSNLEG00000034519) ABRAXAS1 (ENSNLEG00000009133) MRPS18C (ENSNLEG00000009119) HELQ (ENSNLEG00000009088) HPSE (ENSNLEG00000009047) Catarrhini ANCESTRAL SPECIES ENSGT00950000183183.b.a.z #21 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.z #21 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000183183.b.a.z #21 Vervet Monkey MODERN SPECIES 20 USP42 (ENSCSAG00000017719) ANKRD61 (ENSCSAG00000017721) EIF2AK1 (ENSCSAG00000017735) AIMP2 (ENSCSAG00000017739) PMS2 (ENSCSAG00000017741) LMTK2 (ENSCSAG00000017746) #10 BHLHA15 (ENSCSAG00000019492) #11 TECPR1 (ENSCSAG00000017751) #12 BRI3 (ENSCSAG00000017754) #13 BAIAP2L1 (ENSCSAG00000017756) #14 NPTX2 (ENSCSAG00000017758) #16 TMEM130 (ENSCSAG00000017759) #17 TRRAP (ENSCSAG00000017767) #18 SMURF1 (ENSCSAG00000017771) #19 KPNA7 (ENSCSAG00000017780) #20 ARPC1A (ENSCSAG00000017788) #21 ENSCSAG00000017792 #23 BUD31 (ENSCSAG00000017793) #24 PTCD1 (ENSCSAG00000017794) CPSF4 (ENSCSAG00000017795) #26 ZNF789 (ENSCSAG00000017796) ZNF394 (ENSCSAG00000017799) #28 ZKSCAN5 (ENSCSAG00000017802) #30 FAM200A (ENSCSAG00000019491) ZNF655 (ENSCSAG00000017804) #31 TMEM225B (ENSCSAG00000017806) ZSCAN25 (ENSCSAG00000017807) #32 CYP3A5 (ENSCSAG00000017809) ##34 CYP3A7 (ENSCSAG00000017821) ##34 ENSCSAG00000017824 ##34 ENSCSAG00000017825 ##34 Hominoidea ANCESTRAL SPECIES ENSGT00950000183183.b.a.z #21 Gibbon MODERN SPECIES ZNF480 (ENSNLEG00000006036) ZNF610 (ENSNLEG00000027814) ENSNLEG00000033392 ZNF528 (ENSNLEG00000032647) ZNF534 (ENSNLEG00000027043) ZNF808 (ENSNLEG00000006042) ZNF701 (ENSNLEG00000006043) ENSNLEG00000006045 ZNF611 (ENSNLEG00000006047) ZNF28 (ENSNLEG00000006051) ENSNLEG00000035292 ZNF468 (ENSNLEG00000027937) ZNF320 (ENSNLEG00000006053) ZNF888 (ENSNLEG00000030045) ZNF816 (ENSNLEG00000034515) ENSNLEG00000029357 #21 ENSNLEG00000018769 ZNF160 (ENSNLEG00000032951) ZNF415 (ENSNLEG00000027833) ZNF347 (ENSNLEG00000006065) ENSNLEG00000030103 SCYL2 (ENSNLEG00000006068) SLC17A8 (ENSNLEG00000006078) NR1H4 (ENSNLEG00000006093) GAS2L3 (ENSNLEG00000006116) ENSNLEG00000028974 ANO4 (ENSNLEG00000006128) ENSNLEG00000032249 SLC5A8 (ENSNLEG00000006157) UTP20 (ENSNLEG00000006166) ARL1 (ENSNLEG00000006223) Hominidae ANCESTRAL SPECIES ENSGT00950000183183.b.a.z #21 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000183183.b.a.z #21 Gorilla MODERN SPECIES 20 TAC1 (ENSGGOG00000014091) ASNS (ENSGGOG00000005662) ENSGGOG00000038206 #8 OCM2 (ENSGGOG00000022595) #9 LMTK2 (ENSGGOG00000003052) #10 TECPR1 (ENSGGOG00000003065) #12 ENSGGOG00000009646 #13 BAIAP2L1 (ENSGGOG00000022920) #14 ENSGGOG00000023648 NPTX2 (ENSGGOG00000014713) #16 TMEM130 (ENSGGOG00000016665) #17 TRRAP (ENSGGOG00000002928) #18 SMURF1 (ENSGGOG00000011481) #19 KPNA7 (ENSGGOG00000000414) #20 ENSGGOG00000016797 ENSGGOG00000036592 #21 ARPC1A (ENSGGOG00000039217) #21 ARPC1B (ENSGGOG00000013186) #22 PDAP1 (ENSGGOG00000025196) #23 BUD31 (ENSGGOG00000015119) #24 ENSGGOG00000041309 PTCD1 (ENSGGOG00000015123) CPSF4 (ENSGGOG00000015131) #26 ATP5MF (ENSGGOG00000037236) #27 ENSGGOG00000022768 ZNF394 (ENSGGOG00000013650) #28 ZKSCAN5 (ENSGGOG00000009555) #30 FAM200A (ENSGGOG00000001350) ZNF655 (ENSGGOG00000002488) #31 TMEM225B (ENSGGOG00000040673) ZSCAN25 (ENSGGOG00000016950) #32 Euarchontoglires_A ANCESTRAL SPECIES 12 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j #34 ENSGT01090000260018.B.b Tree shrew MODERN SPECIES 8477 ARPC1A (ENSTBEG00000011381) #21 Glires ANCESTRAL SPECIES 11 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a #34 ENSGT01090000260018.B.b Lagomorpha ANCESTRAL SPECIES 54 ENSGT00940000157605 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.b ##34 ENSGT00950000183069.a.a ENSGT01090000260018.B.b ENSGT00940000163330 Pika MODERN SPECIES 5270 ARPC1A (ENSOPRG00000001172) #21 Rabbit MODERN SPECIES 493 NPTX2 (ENSOCUG00000017210) #16 TMEM130 (ENSOCUG00000014924) #17 TRRAP (ENSOCUG00000001829) #18 SMURF1 (ENSOCUG00000016326) #19 KPNA7 (ENSOCUG00000001792) #20 ARPC1A (ENSOCUG00000003944) #21 ARPC1B (ENSOCUG00000025962) #22 PDAP1 (ENSOCUG00000010572) #23 BUD31 (ENSOCUG00000010576) #24 PTCD1 (ENSOCUG00000010584) CPSF4 (ENSOCUG00000002437) #26 ENSOCUG00000015693 #27 ENSOCUG00000038839 ZNF394 (ENSOCUG00000002444) #28 ZKSCAN5 (ENSOCUG00000002447) #30 ZNF655 (ENSOCUG00000007932) #31 ZSCAN25 (ENSOCUG00000007939) #32 ENSOCUG00000025181 ENSOCUG00000024710 CYP3A6 (ENSOCUG00000023380) ##34 ENSOCUG00000027046 Rodentia ANCESTRAL SPECIES 11 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260018.B.b Rodentia_B ANCESTRAL SPECIES 29 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT00950000182958.a.b.b.j.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 387 ENSDORG00000026010 Rsph10b (ENSDORG00000027674) #7 ENSDORG00000028983 Ccz1 (ENSDORG00000013281) #8 Ocm (ENSDORG00000012852) #9 Lmtk2 (ENSDORG00000003934) #10 Bhlha15 (ENSDORG00000026874) #11 Tecpr1 (ENSDORG00000003936) #12 ENSDORG00000027487 Baiap2l1 (ENSDORG00000007704) #14 Nptx2 (ENSDORG00000002048) #16 Tmem130 (ENSDORG00000008927) #17 Trrap (ENSDORG00000016733) #18 Smurf1 (ENSDORG00000001289) #19 Kpna7 (ENSDORG00000001481) #20 ENSDORG00000016059 #21 Arpc1b (ENSDORG00000000737) #22 Pdap1 (ENSDORG00000000738) #23 ENSDORG00000000739 #24 Ptcd1 (ENSDORG00000000740) Cpsf4 (ENSDORG00000000742) #26 Atp5j2 (ENSDORG00000000743) #27 Zkscan14 (ENSDORG00000006843) #28 ENSDORG00000027431 ENSDORG00000029957 Zscan25 (ENSDORG00000024526) #32 ENSDORG00000030120 ENSDORG00000012448 ##34 ENSDORG00000027377 ##34 Gjc3 (ENSDORG00000004757) Zkscan1 (ENSDORG00000025152) Kangaroo rat MODERN SPECIES 323 Ufsp2 (ENSDORG00000008191) 1700029J07Rik (ENSDORG00000028613) ENSDORG00000008195 Pdlim3 (ENSDORG00000008196) Sorbs2 (ENSDORG00000005031) ENSDORG00000026924 Tlr3 (ENSDORG00000026763) Fam149a (ENSDORG00000004650) Cyp4v3 (ENSDORG00000004653) Klkb1 (ENSDORG00000004654) F11 (ENSDORG00000004659) Mtnr1a (ENSDORG00000005478) Fat1 (ENSDORG00000010728) ENSDORG00000028920 Triml1 (ENSDORG00000014160) ENSDORG00000026978 #21 ENSDORG00000016190 Asah1 (ENSDORG00000028326) Pcm1 (ENSDORG00000001908) Fgl1 (ENSDORG00000010254) ENSDORG00000023741 ENSDORG00000023460 ENSDORG00000025424 Pdgfrl (ENSDORG00000007708) Slc7a2 (ENSDORG00000007705) Mtmr7 (ENSDORG00000014883) ENSDORG00000014879 Cnot7 (ENSDORG00000014877) Zdhhc2 (ENSDORG00000014876) Micu3 (ENSDORG00000014875) Fgf20 (ENSDORG00000006878) Myomorpha ANCESTRAL SPECIES 31 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00950000182958.a.b.b.j.a.b ##34 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 62 ENSJJAG00000010169 ENSJJAG00000011666 ENSJJAG00000014807 ENSJJAG00000018815 Spata4 (ENSJJAG00000000204) Asb5 (ENSJJAG00000009349) ENSJJAG00000005362 Vegfc (ENSJJAG00000023820) ENSJJAG00000011565 ENSJJAG00000020696 ENSJJAG00000012501 Neil3 (ENSJJAG00000021628) Aga (ENSJJAG00000024205) ENSJJAG00000017324 ENSJJAG00000011547 ENSJJAG00000024327 #21 ENSJJAG00000017527 Tenm3 (ENSJJAG00000009827) Dctd (ENSJJAG00000016617) ENSJJAG00000012983 ENSJJAG00000005210 Cdkn2aip (ENSJJAG00000000248) Ing2 (ENSJJAG00000022521) ENSJJAG00000022133 Trappc11 (ENSJJAG00000021365) Dlc1 (ENSJJAG00000015251) Sgcz (ENSJJAG00000017689) Tusc3 (ENSJJAG00000017924) ENSJJAG00000020899 Msr1 (ENSJJAG00000010232) ENSJJAG00000015563 Lesser Egyptian jerboa MODERN SPECIES 187 Tmem45a (ENSJJAG00000017418) Adgrg7 (ENSJJAG00000017637) ENSJJAG00000018134 ENSJJAG00000020498 Impg2 (ENSJJAG00000021040) Senp7 (ENSJJAG00000022320) ENSJJAG00000003951 Zbtb11 (ENSJJAG00000004464) ENSJJAG00000016512 Cep97 (ENSJJAG00000017444) Nxpe3 (ENSJJAG00000018826) Nfkbiz (ENSJJAG00000019118) ENSJJAG00000019459 ENSJJAG00000019593 #21 Zpld1 (ENSJJAG00000021262) Alcam (ENSJJAG00000022217) Cblb (ENSJJAG00000015925) Lesser Egyptian jerboa MODERN SPECIES 46 AI597479 (ENSJJAG00000022008) ENSJJAG00000012800 ENSJJAG00000014937 Gpr45 (ENSJJAG00000010952) ENSJJAG00000001151 ENSJJAG00000021686 Tmem182 (ENSJJAG00000012535) Mfsd9 (ENSJJAG00000016903) Slc9a2 (ENSJJAG00000014175) Slc9a4 (ENSJJAG00000016032) Il18r1 (ENSJJAG00000019528) Il1rl1 (ENSJJAG00000011833) Il1rl2 (ENSJJAG00000023541) Il1r1 (ENSJJAG00000011570) Il1r2 (ENSJJAG00000013732) ENSJJAG00000019399 #21 ENSJJAG00000022692 Map4k4 (ENSJJAG00000013973) Creg2 (ENSJJAG00000016924) Rnf149 (ENSJJAG00000007564) Cnot11 (ENSJJAG00000017976) Tbc1d8 (ENSJJAG00000017814) Rpl31 (ENSJJAG00000012790) ENSJJAG00000015742 ENSJJAG00000010749 Nms (ENSJJAG00000004537) Chst10 (ENSJJAG00000010292) Fbln7 (ENSJJAG00000013091) Tmem87b (ENSJJAG00000024136) Mertk (ENSJJAG00000013479) ENSJJAG00000006427 Lesser Egyptian jerboa MODERN SPECIES 250 Eif3b (ENSJJAG00000014658) Trrap (ENSJJAG00000015572) #18 Smurf1 (ENSJJAG00000011991) #19 Kpna7 (ENSJJAG00000010612) #20 ENSJJAG00000011076 #21 Arpc1b (ENSJJAG00000010687) #22 ENSJJAG00000008855 #23 Bud31 (ENSJJAG00000007925) #24 Ptcd1 (ENSJJAG00000000319) Cpsf4 (ENSJJAG00000019426) #26 Atp5j2 (ENSJJAG00000018319) #27 Zkscan14 (ENSJJAG00000017218) #28 Zkscan5 (ENSJJAG00000017033) #30 Muroidea ANCESTRAL SPECIES 51 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1850 ENSNGAG00000010571 Rsph10b (ENSNGAG00000023731) #7 Ccz1 (ENSNGAG00000004053) #8 Ocm (ENSNGAG00000008617) #9 Lmtk2 (ENSNGAG00000012019) #10 Bhlha15 (ENSNGAG00000011836) #11 Tecpr1 (ENSNGAG00000013589) #12 Bri3 (ENSNGAG00000013902) #13 Baiap2l1 (ENSNGAG00000018325) #14 ENSNGAG00000014139 #15 Nptx2 (ENSNGAG00000013356) #16 Tmem130 (ENSNGAG00000017786) #17 Trrap (ENSNGAG00000022892) #18 Smurf1 (ENSNGAG00000008962) #19 Kpna7 (ENSNGAG00000021193) #20 ENSNGAG00000018383 #21 Arpc1b (ENSNGAG00000015329) #22 Pdap1 (ENSNGAG00000017370) #23 ENSNGAG00000002694 #24 ENSNGAG00000015871 #25 Cpsf4 (ENSNGAG00000001567) #26 ENSNGAG00000018916 #27 Zkscan14 (ENSNGAG00000023424) #28 ENSNGAG00000023612 #29 Zkscan5 (ENSNGAG00000017855) #30 Zfp655 (ENSNGAG00000008217) #31 Zscan25 (ENSNGAG00000021657) #32 ENSNGAG00000010294 #33 ENSNGAG00000000778 #34 Upper Galilee mountains blind mole rat MODERN SPECIES 1527 ENSNGAG00000012928 ENSNGAG00000007862 Eeig2 (ENSNGAG00000000645) ENSNGAG00000019065 ##22 Henmt1 (ENSNGAG00000016442) Prpf38b (ENSNGAG00000011476) Fndc7 (ENSNGAG00000017706) Stxbp3 (ENSNGAG00000010143) ENSNGAG00000000145 ENSNGAG00000011912 ENSNGAG00000010890 Wdr47 (ENSNGAG00000019275) ENSNGAG00000010727 ENSNGAG00000010620 Cfap276 (ENSNGAG00000009506) Elapor1 (ENSNGAG00000000218) Sars (ENSNGAG00000001971) Celsr2 (ENSNGAG00000000998) Psrc1 (ENSNGAG00000020079) Muroidea_A ANCESTRAL SPECIES 27 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a Cricetidae ANCESTRAL SPECIES 27 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j.a ENSGT00940000157104 ENSGT00950000182962.a.a Cricetidae_B ANCESTRAL SPECIES 46 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 Prairie vole MODERN SPECIES 110 Ankrd61 (ENSMOCG00000005764) Aimp2 (ENSMOCG00000014024) ENSMOCG00000010177 Rsph10b (ENSMOCG00000018506) #7 Ccz1 (ENSMOCG00000018777) #8 Ocm (ENSMOCG00000005057) #9 Lmtk2 (ENSMOCG00000019505) #10 Tecpr1 (ENSMOCG00000021771) #12 Bri3 (ENSMOCG00000007653) #13 Baiap2l1 (ENSMOCG00000002763) #14 Nptx2 (ENSMOCG00000011501) #16 Tmem130 (ENSMOCG00000015764) #17 Trrap (ENSMOCG00000000272) #18 Smurf1 (ENSMOCG00000010176) #19 Kpna7 (ENSMOCG00000012853) #20 Arpc1a (ENSMOCG00000020844) #21 Arpc1b (ENSMOCG00000010471) #22 Pdap1 (ENSMOCG00000015800) #23 Zfp655 (ENSMOCG00000019962) #31 Zkscan5 (ENSMOCG00000011909) #30 Atp5j2 (ENSMOCG00000003786) #27 Cpsf4 (ENSMOCG00000014901) #26 ENSMOCG00000016192 Bud31 (ENSMOCG00000017115) #24 Northern American deer mouse MODERN SPECIES 15 Pms2 (ENSPEMG00000009009) Rsph10b (ENSPEMG00000017010) #7 Ccz1 (ENSPEMG00000007600) #8 Ocm (ENSPEMG00000023404) #9 Lmtk2 (ENSPEMG00000002227) #10 Bhlha15 (ENSPEMG00000009777) #11 Tecpr1 (ENSPEMG00000002374) #12 Bri3 (ENSPEMG00000009259) #13 Baiap2l1 (ENSPEMG00000016921) #14 Nptx2 (ENSPEMG00000004530) #16 ENSPEMG00000030777 Tmem130 (ENSPEMG00000017312) #17 Trrap (ENSPEMG00000007905) #18 Smurf1 (ENSPEMG00000004784) #19 Kpna7 (ENSPEMG00000017218) #20 Arpc1a (ENSPEMG00000013996) #21 Arpc1b (ENSPEMG00000017147) #22 ENSPEMG00000015747 #23 Bud31 (ENSPEMG00000010947) #24 Ptcd1 (ENSPEMG00000013736) Cpsf4 (ENSPEMG00000004508) #26 Atp5j2 (ENSPEMG00000013672) #27 Zkscan14 (ENSPEMG00000011797) #28 Zkscan5 (ENSPEMG00000010963) #30 ENSPEMG00000011222 ENSPEMG00000030363 ENSPEMG00000029204 #33 ENSPEMG00000031372 ENSPEMG00000026224 #33 Rxfp2 (ENSPEMG00000018554) B3glct (ENSPEMG00000015898) Cricetinae ANCESTRAL SPECIES 19 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713.g #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00950000182958.a.b.b.j.a.a.a.b.b #33 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b.a #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j.a ENSGT00940000157104 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 130 Rsph10b (ENSCGRG00001001878) #7 Ccz1 (ENSCGRG00001021911) #8 Ocm (ENSCGRG00001020230) #9 Lmtk2 (ENSCGRG00001005742) #10 Bhlha15 (ENSCGRG00001003090) #11 Tecpr1 (ENSCGRG00001010075) #12 Bri3 (ENSCGRG00001003030) #13 Baiap2l1 (ENSCGRG00001018597) #14 ENSCGRG00001012810 Nptx2 (ENSCGRG00001001038) #16 Tmem130 (ENSCGRG00001017171) #17 ENSCGRG00001014941 Trrap (ENSCGRG00001015326) #18 Smurf1 (ENSCGRG00001020132) #19 Kpna7 (ENSCGRG00001007501) #20 ENSCGRG00001021831 #21 ENSCGRG00001021035 #22 Pdap1 (ENSCGRG00001016829) #23 Bud31 (ENSCGRG00001012044) #24 Ptcd1 (ENSCGRG00001023686) Cpsf4 (ENSCGRG00001024184) #26 Atp5j2 (ENSCGRG00001016065) #27 Zkscan14 (ENSCGRG00001014948) #28 Zkscan5 (ENSCGRG00001021752) #30 Zfp655 (ENSCGRG00001016484) #31 ENSCGRG00001019977 #33 Zscan25 (ENSCGRG00001017680) #32 ENSCGRG00001010181 #33 ENSCGRG00001023511 #34 ENSCGRG00001020483 Rnf6 (ENSCGRG00001010459) Chinese hamster chok1gshd MODERN SPECIES 136 Sdcbp (ENSCGRG00001024052) Cyp7a1 (ENSCGRG00001023767) Ubxn2b (ENSCGRG00001022571) Fam110b (ENSCGRG00001016576) Bpnt2 (ENSCGRG00001020859) Penk (ENSCGRG00001017327) Sdr16c6 (ENSCGRG00001015002) Sdr16c5 (ENSCGRG00001012918) Chchd7 (ENSCGRG00001011586) Plag1 (ENSCGRG00001007120) Mos (ENSCGRG00001001977) ENSCGRG00001010356 Lyn (ENSCGRG00001023003) Tgs1 (ENSCGRG00001019470) Tmem68 (ENSCGRG00001014894) ENSCGRG00001014282 #21 ENSCGRG00001013815 ENSCGRG00001010786 Sox17 (ENSCGRG00001009950) ENSCGRG00001020498 ENSCGRG00001016962 ENSCGRG00001000991 Rgs20 (ENSCGRG00001023847) Atp6v1h (ENSCGRG00001018456) Oprk1 (ENSCGRG00001014321) ENSCGRG00001013124 Npbwr1 (ENSCGRG00001001773) Rb1cc1 (ENSCGRG00001010377) Alkal1 (ENSCGRG00001008308) St18 (ENSCGRG00001012689) Pcmtd1 (ENSCGRG00001010283) Chinese hamster chok1gshd MODERN SPECIES 207 ENSCGRG00001022919 Mterf3 (ENSCGRG00001020186) PTDSS1 (ENSCGRG00001017439) Sdc2 (ENSCGRG00001015958) ENSCGRG00001013803 #21 Tspyl5 (ENSCGRG00001012646) Mtdh (ENSCGRG00001010894) Laptm4b (ENSCGRG00001006505) Matn2 (ENSCGRG00001022796) Rpl30 (ENSCGRG00001020021) Rida (ENSCGRG00001019905) Pop1 (ENSCGRG00001017308) Nipal2 (ENSCGRG00001015512) Kcns2 (ENSCGRG00001014130) Stk3 (ENSCGRG00001014280) Osr2 (ENSCGRG00001011416) Vps13b (ENSCGRG00001019154) Cox6c (ENSCGRG00001001774) Rgs22 (ENSCGRG00001023210) Fbxo43 (ENSCGRG00001022414) Golden Hamster MODERN SPECIES 712 Aimp2 (ENSMAUG00000008325) ENSMAUG00000014015 ENSMAUG00000011345 #7 Ccz1 (ENSMAUG00000004705) #8 Ocm (ENSMAUG00000016041) #9 Lmtk2 (ENSMAUG00000014353) #10 Tecpr1 (ENSMAUG00000008072) #12 Bri3 (ENSMAUG00000000701) #13 Baiap2l1 (ENSMAUG00000008280) #14 Nptx2 (ENSMAUG00000017629) #16 ENSMAUG00000000660 Tmem130 (ENSMAUG00000020273) #17 Trrap (ENSMAUG00000015855) #18 Smurf1 (ENSMAUG00000000511) #19 Kpna7 (ENSMAUG00000019165) #20 ENSMAUG00000014235 #21 ENSMAUG00000003299 #22 Pdap1 (ENSMAUG00000011742) #23 Bud31 (ENSMAUG00000016405) #24 ENSMAUG00000011008 Cpsf4 (ENSMAUG00000021253) #26 Atp5j2 (ENSMAUG00000018419) #27 Zkscan5 (ENSMAUG00000014532) #30 Zscan25 (ENSMAUG00000012364) #32 ENSMAUG00000013270 #33 ENSMAUG00000011782 #34 Rnf6 (ENSMAUG00000014438) ENSMAUG00000013390 Wasf3 (ENSMAUG00000004464) Murinae ANCESTRAL SPECIES 28 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a Rat MODERN SPECIES 3 Rsph10b (ENSRNOG00000001036) #7 Ccz1b (ENSRNOG00000001032) #8 Ocm (ENSRNOG00000001031) #9 Lmtk2 (ENSRNOG00000025155) #10 Bhlha15 (ENSRNOG00000025164) #11 Tecpr1 (ENSRNOG00000001010) #12 Bri3 (ENSRNOG00000001009) #13 Baiap2l1 (ENSRNOG00000001007) #14 RGD1565131 (ENSRNOG00000025212) LOC100360200 (ENSRNOG00000025217) #26 Nptx2 (ENSRNOG00000001006) #16 Tmem130 (ENSRNOG00000025235) #17 Trrap (ENSRNOG00000025244) #18 Smurf1 (ENSRNOG00000000999) #19 Kpna7 (ENSRNOG00000042296) #20 Arpc1a (ENSRNOG00000000996) #21 Arpc1b (ENSRNOG00000000991) #22 Pdap1 (ENSRNOG00000000990) #23 Bud31 (ENSRNOG00000000989) #24 Ptcd1 (ENSRNOG00000000987) Cpsf4 (ENSRNOG00000000985) #26 Atp5mf (ENSRNOG00000027049) #27 Zfp394 (ENSRNOG00000000983) #28 Zkscan5 (ENSRNOG00000059552) #30 Zfp655 (ENSRNOG00000060129) #31 Zscan25 (ENSRNOG00000042213) #32 Cyp3a23-3a1 (ENSRNOG00000067532) #33 ENSRNOG00000062654 #34 ENSRNOG00000063231 #33 Cyp3a23-3a1 (ENSRNOG00000062027) #33 Cyp3a2 (ENSRNOG00000032560) #33 Mus ANCESTRAL SPECIES 17 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #34 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c #34 ENSGT00940000158530.j Shrew mouse MODERN SPECIES 15 Pms2 (MGP_PahariEiJ_G0024561) MGP_PahariEiJ_G0024562 Rsph10b (MGP_PahariEiJ_G0024563) #7 Ccz1 (MGP_PahariEiJ_G0024564) #8 Ocm (MGP_PahariEiJ_G0024565) #9 Lmtk2 (MGP_PahariEiJ_G0024566) #10 Bhlha15 (MGP_PahariEiJ_G0024567) #11 Tecpr1 (MGP_PahariEiJ_G0024568) #12 Bri3 (MGP_PahariEiJ_G0024569) #13 Baiap2l1 (MGP_PahariEiJ_G0024570) #14 Nptx2 (MGP_PahariEiJ_G0024571) #16 Tmem130 (MGP_PahariEiJ_G0024572) #17 Trrap (MGP_PahariEiJ_G0024573) #18 Smurf1 (MGP_PahariEiJ_G0024574) #19 Kpna7 (MGP_PahariEiJ_G0024575) #20 MGP_PahariEiJ_G0024576 #21 Arpc1b (MGP_PahariEiJ_G0024577) #22 Pdap1 (MGP_PahariEiJ_G0024578) #23 Bud31 (MGP_PahariEiJ_G0024579) #24 Ptcd1 (MGP_PahariEiJ_G0024580) Cpsf4 (MGP_PahariEiJ_G0024581) #26 Atp5j2 (MGP_PahariEiJ_G0024582) #27 Zkscan14 (MGP_PahariEiJ_G0024583) #28 Zkscan5 (MGP_PahariEiJ_G0024584) #30 Zfp655 (MGP_PahariEiJ_G0024585) #31 Zscan25 (MGP_PahariEiJ_G0024586) #32 MGP_PahariEiJ_G0024587 #34 MGP_PahariEiJ_G0024589 #34 MGP_PahariEiJ_G0024588 #34 Rnf6 (MGP_PahariEiJ_G0024590) Cdk8 (MGP_PahariEiJ_G0024591) Mus_A ANCESTRAL SPECIES 6 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000156012.q ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.w #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #34 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c #34 ENSGT00940000158530.j Ryukyu mouse MODERN SPECIES 14 Ccz1 (MGP_CAROLIEiJ_G0027992) #8 Fpr-rs3 (MGP_CAROLIEiJ_G0027993) Ocm (MGP_CAROLIEiJ_G0027994) #9 Lmtk2 (MGP_CAROLIEiJ_G0027995) #10 Bhlha15 (MGP_CAROLIEiJ_G0027996) #11 Tecpr1 (MGP_CAROLIEiJ_G0027997) #12 Bri3 (MGP_CAROLIEiJ_G0027998) #13 Baiap2l1 (MGP_CAROLIEiJ_G0027999) #14 Nptx2 (MGP_CAROLIEiJ_G0028000) #16 Tmem130 (MGP_CAROLIEiJ_G0028001) #17 Trrap (MGP_CAROLIEiJ_G0028002) #18 Smurf1 (MGP_CAROLIEiJ_G0028003) #19 Kpna7 (MGP_CAROLIEiJ_G0028004) #20 MGP_CAROLIEiJ_G0028005 MGP_CAROLIEiJ_G0028006 Arpc1a (MGP_CAROLIEiJ_G0028007) #21 Arpc1b (MGP_CAROLIEiJ_G0028008) #22 Pdap1 (MGP_CAROLIEiJ_G0028009) #23 Bud31 (MGP_CAROLIEiJ_G0028010) #24 Ptcd1 (MGP_CAROLIEiJ_G0028011) Cpsf4 (MGP_CAROLIEiJ_G0028012) #26 Atp5j2 (MGP_CAROLIEiJ_G0028013) #27 Zkscan14 (MGP_CAROLIEiJ_G0028014) #28 Zkscan5 (MGP_CAROLIEiJ_G0028015) #30 Zfp655 (MGP_CAROLIEiJ_G0028016) #31 MGP_CAROLIEiJ_G0028017 #32 MGP_CAROLIEiJ_G0028018 ##34 MGP_CAROLIEiJ_G0028020 MGP_CAROLIEiJ_G0028022 MGP_CAROLIEiJ_G0028021 MGP_CAROLIEiJ_G0028023 Mus_B ANCESTRAL SPECIES 4 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000156012.q ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.w #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #34 ENSGT00950000182958.a.b.b.j.a.a.a.b.j #33 ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a #34 ENSGT00940000158530.j Mouse MODERN SPECIES 14 Rsph10b (ENSMUSG00000075569) #7 Ccz1 (ENSMUSG00000029617) #8 Ocm (ENSMUSG00000029618) #9 Lmtk2 (ENSMUSG00000038970) #10 Bhlha15 (ENSMUSG00000052271) #11 Tecpr1 (ENSMUSG00000066621) #12 Bri3 (ENSMUSG00000047843) #13 Baiap2l1 (ENSMUSG00000038859) #14 Nptx2 (ENSMUSG00000059991) #16 Tmem130 (ENSMUSG00000043388) #17 Trrap (ENSMUSG00000045482) #18 Smurf1 (ENSMUSG00000038780) #19 Kpna7 (ENSMUSG00000038770) #20 Gm4871 (ENSMUSG00000061707) 1700018F24Rik (ENSMUSG00000029620) Arpc1a (ENSMUSG00000029621) #21 Arpc1b (ENSMUSG00000029622) #22 Pdap1 (ENSMUSG00000029623) #23 Bud31 (ENSMUSG00000038722) #24 Ptcd1 (ENSMUSG00000029624) Cpsf4 (ENSMUSG00000029625) #26 Atp5j2 (ENSMUSG00000038690) #27 Zkscan14 (ENSMUSG00000029627) #28 Zkscan5 (ENSMUSG00000055991) #30 Zfp655 (ENSMUSG00000007812) #31 Zscan25 (ENSMUSG00000070420) #32 Cyp3a57 (ENSMUSG00000070419) #34 Cyp3a16 (ENSMUSG00000038656) #33 Cyp3a41b (ENSMUSG00000075552) #33 Cyp3a41a (ENSMUSG00000075551) #33 Cyp3a44 (ENSMUSG00000054417) #33 Mus_C ANCESTRAL SPECIES 4 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000156012.q ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b.w #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.c #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00940000162113 #32 ENSGT00940000155423.e.b ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a spretus MODERN SPECIES 14 Pms2 (MGP_SPRETEiJ_G0028993) MGP_SPRETEiJ_G0028994 Rsph10b (MGP_SPRETEiJ_G0028995) #7 Ccz1 (MGP_SPRETEiJ_G0028996) #8 Ocm (MGP_SPRETEiJ_G0028997) #9 Lmtk2 (MGP_SPRETEiJ_G0028998) #10 Bhlha15 (MGP_SPRETEiJ_G0028999) #11 Tecpr1 (MGP_SPRETEiJ_G0029000) #12 Bri3 (MGP_SPRETEiJ_G0029001) #13 Baiap2l1 (MGP_SPRETEiJ_G0029002) #14 Nptx2 (MGP_SPRETEiJ_G0029003) #16 Tmem130 (MGP_SPRETEiJ_G0029004) #17 Trrap (MGP_SPRETEiJ_G0029005) #18 Smurf1 (MGP_SPRETEiJ_G0029006) #19 Kpna7 (MGP_SPRETEiJ_G0029007) #20 Arpc1a (MGP_SPRETEiJ_G0029008) #21 MGP_SPRETEiJ_G0029009 #22 Pdap1 (MGP_SPRETEiJ_G0029010) #23 Bud31 (MGP_SPRETEiJ_G0029011) #24 Ptcd1 (MGP_SPRETEiJ_G0029012) Cpsf4 (MGP_SPRETEiJ_G0029013) #26 Atp5j2 (MGP_SPRETEiJ_G0029014) #27 Zkscan14 (MGP_SPRETEiJ_G0029015) #28 Zkscan5 (MGP_SPRETEiJ_G0029016) #30 Zfp655 (MGP_SPRETEiJ_G0029017) #31 Zscan25 (MGP_SPRETEiJ_G0029018) #32 MGP_SPRETEiJ_G0029019 #34 MGP_SPRETEiJ_G0029020 #34 MGP_SPRETEiJ_G0029021 #34 Rnf6 (MGP_SPRETEiJ_G0029022) Cdk8 (MGP_SPRETEiJ_G0029023) Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3370 Rsph10b (ENSMSIG00000029304) #7 ENSMSIG00000029291 #8 Ocm (ENSMSIG00000029288) #9 Lmtk2 (ENSMSIG00000029281) #10 Bhlha15 (ENSMSIG00000029278) #11 Tecpr1 (ENSMSIG00000029264) #12 ENSMSIG00000029259 Baiap2l1 (ENSMSIG00000029242) #14 ENSMSIG00000029239 Nptx2 (ENSMSIG00000029233) #16 Tmem130 (ENSMSIG00000029228) #17 Trrap (ENSMSIG00000029078) #18 Smurf1 (ENSMSIG00000029028) #19 ENSMSIG00000029026 #20 ENSMSIG00000029019 Arpc1a (ENSMSIG00000029008) #21 ENSMSIG00000029006 Arpc1b (ENSMSIG00000028992) #22 Pdap1 (ENSMSIG00000028982) #23 Bud31 (ENSMSIG00000028973) #24 Ptcd1 (ENSMSIG00000028962) Cpsf4 (ENSMSIG00000028934) #26 Atp5j2 (ENSMSIG00000028928) #27 ENSMSIG00000028921 #28 Zkscan5 (ENSMSIG00000028906) #30 Zscan25 (ENSMSIG00000028875) #32 Steppe mouse MODERN SPECIES 3084 ENSMSIG00000024806 #21 ENSMSIG00000024803 Rhobtb2 (ENSMSIG00000024755) Tnfrsf10b (ENSMSIG00000024749) ENSMSIG00000024730 Chmp7 (ENSMSIG00000024716) R3hcc1 (ENSMSIG00000024698) Loxl2 (ENSMSIG00000024664) ENSMSIG00000024639 ENSMSIG00000024627 Slc25a37 (ENSMSIG00000024616) Nkx3-1 (ENSMSIG00000024609) Nkx2-6 (ENSMSIG00000024600) ENSMSIG00000024592 Stc1 (ENSMSIG00000024577) Adam28 (ENSMSIG00000024389) Rodentia_A ANCESTRAL SPECIES 10 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260018.B.b Hystricomorpha ANCESTRAL SPECIES 17 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a Hystricomorpha_a ANCESTRAL SPECIES 16 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.a.a #34 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a Guinea pig DUPLICATION Guinea pig MODERN SPECIES 30 PMS2 (ENSCPOG00000000555) ENSCPOG00000019836 #7 ENSCPOG00000014787 #8 ENSCPOG00000011911 #9 ENSCPOG00000031560 LMTK2 (ENSCPOG00000009408) #10 BHLHA15 (ENSCPOG00000033368) #11 TECPR1 (ENSCPOG00000010430) #12 BRI3 (ENSCPOG00000025281) #13 BAIAP2L1 (ENSCPOG00000009274) #14 NPTX2 (ENSCPOG00000012135) #16 TMEM130 (ENSCPOG00000010669) #17 TRRAP (ENSCPOG00000007298) #18 SMURF1 (ENSCPOG00000000124) #19 KPNA7 (ENSCPOG00000014326) #20 ENSCPOG00000001777 #21 ARPC1B (ENSCPOG00000020413) #22 PDAP1 (ENSCPOG00000023217) #23 BUD31 (ENSCPOG00000001779) #24 PTCD1 (ENSCPOG00000001780) CPSF4 (ENSCPOG00000001783) #26 ENSCPOG00000034651 ZNF394 (ENSCPOG00000013321) #28 ZKSCAN5 (ENSCPOG00000032578) #30 ZNF655 (ENSCPOG00000032275) #31 ZSCAN25 (ENSCPOG00000031211) #32 Cyp3a14 (ENSCPOG00000001589) #34 ENSCPOG00000024937 #34 ENSCPOG00000012976 #34 ENSCPOG00000020375 ##34 ENSCPOG00000022315 ##34 Guinea pig MODERN SPECIES 38 ENSCPOG00000004435 ENSCPOG00000009264 TMEM170B (ENSCPOG00000009186) ADTRP (ENSCPOG00000009187) HIVEP1 (ENSCPOG00000007524) EDN1 (ENSCPOG00000032724) PHACTR1 (ENSCPOG00000005061) TBC1D7 (ENSCPOG00000040544) GFOD1 (ENSCPOG00000033665) SIRT5 (ENSCPOG00000019784) NOL7 (ENSCPOG00000011722) RANBP9 (ENSCPOG00000011734) MCUR1 (ENSCPOG00000014899) RNF182 (ENSCPOG00000039677) CD83 (ENSCPOG00000040434) ENSCPOG00000020752 #21 JARID2 (ENSCPOG00000013267) DTNBP1 (ENSCPOG00000009425) MYLIP (ENSCPOG00000002917) GMPR (ENSCPOG00000011953) ATXN1 (ENSCPOG00000022869) STMND1 (ENSCPOG00000039398) RBM24 (ENSCPOG00000038459) CAP2 (ENSCPOG00000008839) FAM8A1 (ENSCPOG00000011886) NUP153 (ENSCPOG00000004007) KIF13A (ENSCPOG00000000367) NHLRC1 (ENSCPOG00000026167) TPMT (ENSCPOG00000005295) KDM1B (ENSCPOG00000005298) DEK (ENSCPOG00000005308) Hystricomorpha_b ANCESTRAL SPECIES 55 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 Long-tailed chinchilla MODERN SPECIES 167 AIMP2 (ENSCLAG00000009734) ENSCLAG00000009853 ENSCLAG00000004477 #7 ENSCLAG00000006812 #8 ENSCLAG00000007617 #9 LMTK2 (ENSCLAG00000005806) #10 BHLHA15 (ENSCLAG00000006581) #11 TECPR1 (ENSCLAG00000006941) #12 BRI3 (ENSCLAG00000012095) #13 BAIAP2L1 (ENSCLAG00000013528) #14 NPTX2 (ENSCLAG00000013930) #16 TMEM130 (ENSCLAG00000006489) #17 TRRAP (ENSCLAG00000007110) #18 SMURF1 (ENSCLAG00000005211) #19 KPNA7 (ENSCLAG00000006067) #20 ARPC1A (ENSCLAG00000006964) #21 ARPC1B (ENSCLAG00000006996) #22 PDAP1 (ENSCLAG00000007628) #23 BUD31 (ENSCLAG00000008079) #24 PTCD1 (ENSCLAG00000006354) CPSF4 (ENSCLAG00000007050) #26 ATP5MF (ENSCLAG00000004636) #27 ZNF394 (ENSCLAG00000005098) #28 ZKSCAN5 (ENSCLAG00000006450) #30 ZNF655 (ENSCLAG00000012856) #31 TMEM225B (ENSCLAG00000007073) ZSCAN25 (ENSCLAG00000006740) #32 Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 72 ENSODEG00000019832 EIF2AK1 (ENSODEG00000011509) ENSODEG00000011718 ENSODEG00000012084 ENSODEG00000011251 #8 ENSODEG00000011077 #9 LMTK2 (ENSODEG00000012233) #10 TECPR1 (ENSODEG00000011578) #12 BRI3 (ENSODEG00000010514) #13 BAIAP2L1 (ENSODEG00000010504) #14 ENSODEG00000012635 NPTX2 (ENSODEG00000011311) #16 TMEM130 (ENSODEG00000010706) #17 TRRAP (ENSODEG00000013196) #18 SMURF1 (ENSODEG00000012098) #19 ENSODEG00000010891 #21 ARPC1B (ENSODEG00000011865) #22 ENSODEG00000012197 #23 BUD31 (ENSODEG00000011226) #24 ENSODEG00000011181 #26 ENSODEG00000012299 ZKSCAN5 (ENSODEG00000012014) #30 ZNF655 (ENSODEG00000011702) #31 ZSCAN25 (ENSODEG00000012099) #32 Degu MODERN SPECIES 152 ENSODEG00000006230 HNRNPK (ENSODEG00000005637) RMI1 (ENSODEG00000004954) ENSODEG00000006844 SLC28A3 (ENSODEG00000004732) NTRK2 (ENSODEG00000005490) ENSODEG00000005328 AGTPBP1 (ENSODEG00000005635) NAA35 (ENSODEG00000005083) ENSODEG00000005810 ENSODEG00000019211 ENSODEG00000005480 ENSODEG00000006904 ENSODEG00000006376 ENSODEG00000004592 ENSODEG00000005716 #21 DAPK1 (ENSODEG00000005070) ENSODEG00000005255 ATP12A (ENSODEG00000005612) ENSODEG00000005443 CENPJ (ENSODEG00000004803) ENSODEG00000004571 ENSODEG00000005412 ENSODEG00000007817 ENSODEG00000007655 ENSODEG00000007331 ENSODEG00000019072 ZMYM2 (ENSODEG00000004718) GJB2 (ENSODEG00000019286) GJB6 (ENSODEG00000019244) ENSODEG00000005772 Degu MODERN SPECIES 84 CACNA1D (ENSODEG00000007697) CHDH (ENSODEG00000007204) IL17RB (ENSODEG00000010614) ACTR8 (ENSODEG00000009432) ENSODEG00000009603 LRTM1 (ENSODEG00000009416) CACNA2D3 (ENSODEG00000006836) WNT5A (ENSODEG00000007271) ERC2 (ENSODEG00000006199) CCDC66 (ENSODEG00000010465) ENSODEG00000007286 TASOR (ENSODEG00000006527) ENSODEG00000008069 #23 ENSODEG00000007518 ARHGEF3 (ENSODEG00000007707) ENSODEG00000007374 #21 ENSODEG00000009148 ENSODEG00000008648 APPL1 (ENSODEG00000005753) ASB14 (ENSODEG00000005874) ENSODEG00000006288 ENSODEG00000019205 ENSODEG00000009554 ENSODEG00000009106 ENSODEG00000006477 PDE12 (ENSODEG00000006268) ENSODEG00000006837 DENND6A (ENSODEG00000005908) ENSODEG00000019341 ENSODEG00000006496 SLMAP (ENSODEG00000005798) Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES LMTK2 (ENSHGLG00000013780) #10 BHLHA15 (ENSHGLG00000033900) #11 TECPR1 (ENSHGLG00000018344) #12 ENSHGLG00000015104 ENSHGLG00000013687 ENSHGLG00000032492 BAIAP2L1 (ENSHGLG00000017707) #14 ENSHGLG00000044552 ENSHGLG00000007737 #16 ENSHGLG00000042548 TMEM130 (ENSHGLG00000008380) #17 TRRAP (ENSHGLG00000013805) #18 SMURF1 (ENSHGLG00000006003) #19 ENSHGLG00000009628 #20 ENSHGLG00000043221 ENSHGLG00000017246 #21 ARPC1B (ENSHGLG00000017816) #22 PDAP1 (ENSHGLG00000013857) #23 ENSHGLG00000018123 #24 PTCD1 (ENSHGLG00000017621) ENSHGLG00000017150 #26 ENSHGLG00000006068 #27 ENSHGLG00000006453 ZNF394 (ENSHGLG00000033544) #28 ZKSCAN5 (ENSHGLG00000009175) #30 ZNF655 (ENSHGLG00000005530) #31 ENSHGLG00000040144 #32 ENSHGLG00000033148 ENSHGLG00000038153 ENSHGLG00000041246 ENSHGLG00000000859 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000047168 ENSHGLG00000033546 ENSHGLG00000049221 ENSHGLG00000019470 ENSHGLG00000046491 ZCCHC13 (ENSHGLG00000042816) ENSHGLG00000001245 ENSHGLG00000001010 ENSHGLG00000039057 NEXMIF (ENSHGLG00000012593) ABCB7 (ENSHGLG00000011499) UPRT (ENSHGLG00000050110) ENSHGLG00000011317 ENSHGLG00000006554 ZDHHC15 (ENSHGLG00000005176) ENSHGLG00000004443 #21 ENSHGLG00000035742 ENSHGLG00000032329 ENSHGLG00000045854 FOXO4 (ENSHGLG00000013305) ENSHGLG00000004894 ENSHGLG00000010744 MED12 (ENSHGLG00000005421) NLGN3 (ENSHGLG00000009982) GJB1 (ENSHGLG00000004743) ZMYM3 (ENSHGLG00000014526) NONO (ENSHGLG00000005550) ITGB1BP2 (ENSHGLG00000015433) ENSHGLG00000050039 ENSHGLG00000050796 ENSHGLG00000014818 Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000017139 ENSHGLG00000045477 ENSHGLG00000050579 ENSHGLG00000020814 ENSHGLG00000035414 ENSHGLG00000038697 ENSHGLG00000050450 TAF3 (ENSHGLG00000008290) ENSHGLG00000041554 Atp5f1c (ENSHGLG00000045723) KIN (ENSHGLG00000005095) ITIH2 (ENSHGLG00000018567) ENSHGLG00000006958 ITIH5 (ENSHGLG00000011827) SFMBT2 (ENSHGLG00000037639) ENSHGLG00000047228 #21 ENSHGLG00000036714 PRKCQ (ENSHGLG00000015477) ENSHGLG00000018392 PFKFB3 (ENSHGLG00000015612) ENSHGLG00000049853 ENSHGLG00000012809 RBM17 (ENSHGLG00000011580) IL2RA (ENSHGLG00000009500) ENSHGLG00000045098 ENSHGLG00000015581 ENSHGLG00000036312 ENSHGLG00000017145 CALML3 (ENSHGLG00000021203) ENSHGLG00000032878 NET1 (ENSHGLG00000008031) Naked mole-rat female MODERN SPECIES 15 ENSHGLG00000016130 ENSHGLG00000048943 AQP8 (ENSHGLG00000015845) ZKSCAN2 (ENSHGLG00000015971) ENSHGLG00000050225 HS3ST4 (ENSHGLG00000044229) ENSHGLG00000009416 ENSHGLG00000043464 KDM8 (ENSHGLG00000015770) NSMCE1 (ENSHGLG00000006540) ENSHGLG00000041088 ENSHGLG00000040451 GTF3C1 (ENSHGLG00000011628) KATNIP (ENSHGLG00000016183) GSG1L (ENSHGLG00000049570) ENSHGLG00000014594 #21 ENSHGLG00000009679 ENSHGLG00000036755 ENSHGLG00000035175 ENSHGLG00000012819 SPNS1 (ENSHGLG00000011375) NFATC2IP (ENSHGLG00000014293) CD19 (ENSHGLG00000010838) RABEP2 (ENSHGLG00000014706) ATP2A1 (ENSHGLG00000013268) SH2B1 (ENSHGLG00000012826) TUFM (ENSHGLG00000006613) ATXN2L (ENSHGLG00000010957) ENSHGLG00000011445 ENSHGLG00000020642 CLN3 (ENSHGLG00000012878) Sciuridae ANCESTRAL SPECIES 9 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.ib #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.e.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b ##34 ENSGT01090000260018.B.b Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 9 ENSSVLG00005020563 #7 ENSSVLG00005020724 #8 ENSSVLG00005020777 #9 LMTK2 (ENSSVLG00005020820) #10 BHLHA15 (ENSSVLG00005020870) #11 TECPR1 (ENSSVLG00005020896) #12 ENSSVLG00005020936 BRI3 (ENSSVLG00005020971) #13 BAIAP2L1 (ENSSVLG00005021009) #14 NPTX2 (ENSSVLG00005021028) #16 TMEM130 (ENSSVLG00005021101) #17 TRRAP (ENSSVLG00005021317) #18 SMURF1 (ENSSVLG00005021442) #19 KPNA7 (ENSSVLG00005021513) #20 ENSSVLG00005021650 ENSSVLG00005021905 #21 ARPC1B (ENSSVLG00005021982) #22 ENSSVLG00005022058 #23 BUD31 (ENSSVLG00005022102) #24 PTCD1 (ENSSVLG00005022169) CPSF4 (ENSSVLG00005022210) #26 ENSSVLG00005022299 #27 ENSSVLG00005022403 ZNF789 (ENSSVLG00005022423) ZNF394 (ENSSVLG00005022501) #28 ZKSCAN5 (ENSSVLG00005022583) #30 ZNF655 (ENSSVLG00005022626) #31 TMEM225B (ENSSVLG00005022717) ZSCAN25 (ENSSVLG00005022756) #32 ENSSVLG00005022805 ##34 ENSSVLG00005023015 ##34 Eurasian red squirrel MODERN SPECIES ENSSVLG00005002798 ENSSVLG00005002791 VPS13B (ENSSVLG00005002505) OSR2 (ENSSVLG00005002406) STK3 (ENSSVLG00005002365) KCNS2 (ENSSVLG00005002345) NIPAL2 (ENSSVLG00005002294) POP1 (ENSSVLG00005002246) ENSSVLG00005002234 ERICH5 (ENSSVLG00005002215) ENSSVLG00005002202 ENSSVLG00005002192 ENSSVLG00005002166 MATN2 (ENSSVLG00005002132) LAPTM4B (ENSSVLG00005002108) ENSSVLG00005002092 #21 ENSSVLG00005002083 ENSSVLG00005002034 TSPYL5 (ENSSVLG00005002014) CPQ (ENSSVLG00005001998) SDC2 (ENSSVLG00005001979) PTDSS1 (ENSSVLG00005001955) MTERF3 (ENSSVLG00005001923) ENSSVLG00005001896 GDF6 (ENSSVLG00005001881) CFAP418 (ENSSVLG00005001864) ENSSVLG00005001851 ENSSVLG00005001825 TP53INP1 (ENSSVLG00005001805) ENSSVLG00005001753 INTS8 (ENSSVLG00005001719) Eurasian red squirrel MODERN SPECIES 16 GTF2H4 (ENSSVLG00005005995) VARS2 (ENSSVLG00005005632) SFTA2 (ENSSVLG00005005574) ENSSVLG00005005513 C6orf15 (ENSSVLG00005005479) CDSN (ENSSVLG00005005459) PSORS1C2 (ENSSVLG00005005438) CCHCR1 (ENSSVLG00005005239) TCF19 (ENSSVLG00005005157) ENSSVLG00005005102 ENSSVLG00005005024 ENSSVLG00005005003 ENSSVLG00005004871 ENSSVLG00005004777 ENSSVLG00005004723 ENSSVLG00005004702 #21 ENSSVLG00005004683 ENSSVLG00005004672 ENSSVLG00005004666 ENSSVLG00005004654 ENSSVLG00005004643 ENSSVLG00005004633 ENSSVLG00005004614 ENSSVLG00005004572 MCCD1 (ENSSVLG00005004556) DDX39B (ENSSVLG00005004494) ATP6V1G2 (ENSSVLG00005004446) ENSSVLG00005004407 LTA (ENSSVLG00005004395) TNF (ENSSVLG00005004368) LTB (ENSSVLG00005004337) Marmotini ANCESTRAL SPECIES 85 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.ib #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.e.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##34 Alpin marmot MODERN SPECIES 77 ENSMMMG00000006369 #7 ENSMMMG00000006346 #8 ENSMMMG00000006340 #9 LMTK2 (ENSMMMG00000006321) #10 BHLHA15 (ENSMMMG00000006320) #11 TECPR1 (ENSMMMG00000006293) #12 ENSMMMG00000006285 BRI3 (ENSMMMG00000006279) #13 BAIAP2L1 (ENSMMMG00000006242) #14 NPTX2 (ENSMMMG00000006236) #16 TMEM130 (ENSMMMG00000006225) #17 TRRAP (ENSMMMG00000005650) #18 SMURF1 (ENSMMMG00000005602) #19 KPNA7 (ENSMMMG00000005564) #20 ENSMMMG00000005492 ARPC1A (ENSMMMG00000005477) #21 ARPC1B (ENSMMMG00000005459) #22 PDAP1 (ENSMMMG00000005448) #23 BUD31 (ENSMMMG00000005402) #24 PTCD1 (ENSMMMG00000005393) ENSMMMG00000005390 CPSF4 (ENSMMMG00000005304) #26 ENSMMMG00000005266 #27 ZNF394 (ENSMMMG00000005254) #28 ZKSCAN5 (ENSMMMG00000005213) #30 ZNF655 (ENSMMMG00000005178) #31 TMEM225B (ENSMMMG00000005168) ZSCAN25 (ENSMMMG00000005159) #32 ENSMMMG00000005149 ##34 ENSMMMG00000005108 ##34 ENSMMMG00000005062 ##34 Marmotini_b ANCESTRAL SPECIES 131 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.ib #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986.e.a #27 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##34 Squirrel MODERN SPECIES 350 ENSSTOG00000029156 ENSSTOG00000006111 ENSSTOG00000026631 #7 ENSSTOG00000006071 #8 ENSSTOG00000010731 #9 LMTK2 (ENSSTOG00000009706) #10 BHLHA15 (ENSSTOG00000009728) #11 TECPR1 (ENSSTOG00000009733) #12 BRI3 (ENSSTOG00000021622) #13 BAIAP2L1 (ENSSTOG00000020782) #14 NPTX2 (ENSSTOG00000003631) #16 TMEM130 (ENSSTOG00000010723) #17 TRRAP (ENSSTOG00000028392) #18 SMURF1 (ENSSTOG00000015427) #19 KPNA7 (ENSSTOG00000032733) #20 ARPC1A (ENSSTOG00000001660) #21 ARPC1B (ENSSTOG00000001668) #22 PDAP1 (ENSSTOG00000001679) #23 BUD31 (ENSSTOG00000023828) #24 PTCD1 (ENSSTOG00000001682) CPSF4 (ENSSTOG00000001688) #26 ATP5MF (ENSSTOG00000023928) #27 ENSSTOG00000034172 ZNF394 (ENSSTOG00000032054) #28 ZKSCAN5 (ENSSTOG00000019879) #30 ZNF655 (ENSSTOG00000008206) #31 ZSCAN25 (ENSSTOG00000008185) #32 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 277 UBL4B (ENSUPAG00010016066) SLC6A17 (ENSUPAG00010016070) KCNC4 (ENSUPAG00010016092) RBM15 (ENSUPAG00010016124) SLC16A4 (ENSUPAG00010016126) LAMTOR5 (ENSUPAG00010016147) PROK1 (ENSUPAG00010016152) ENSUPAG00010016162 ENSUPAG00010016166 KCNA10 (ENSUPAG00010016174) KCNA2 (ENSUPAG00010016180) KCNA3 (ENSUPAG00010016187) ENSUPAG00010016189 CD53 (ENSUPAG00010016194) LRIF1 (ENSUPAG00010016206) ENSUPAG00010016216 #21 DRAM2 (ENSUPAG00010016230) CEPT1 (ENSUPAG00010016280) DENND2D (ENSUPAG00010016317) Arctic ground squirrel MODERN SPECIES 300 ENSUPAG00010006316 #7 ENSUPAG00010006347 #8 ENSUPAG00010006809 #9 LMTK2 (ENSUPAG00010006825) #10 BHLHA15 (ENSUPAG00010006858) #11 TECPR1 (ENSUPAG00010006865) #12 BRI3 (ENSUPAG00010006894) #13 BAIAP2L1 (ENSUPAG00010006906) #14 NPTX2 (ENSUPAG00010006944) #16 TMEM130 (ENSUPAG00010006958) #17 TRRAP (ENSUPAG00010006983) #18 ENSUPAG00010007610 SMURF1 (ENSUPAG00010007614) #19 KPNA7 (ENSUPAG00010007717) #20 ENSUPAG00010007740 ARPC1A (ENSUPAG00010007778) #21 ARPC1B (ENSUPAG00010007793) #22 PDAP1 (ENSUPAG00010007814) #23 BUD31 (ENSUPAG00010007837) #24 PTCD1 (ENSUPAG00010007850) CPSF4 (ENSUPAG00010007865) #26 ENSUPAG00010007991 ENSUPAG00010007996 #27 ENSUPAG00010008010 #28 ENSUPAG00010008013 #28 ZKSCAN5 (ENSUPAG00010008019) #30 ZNF655 (ENSUPAG00010008051) #31 TMEM225B (ENSUPAG00010008085) ZSCAN25 (ENSUPAG00010008096) #32 ENSUPAG00010008106 ##34 ENSUPAG00010008122 ##34 Atlantogenata ANCESTRAL SPECIES 21 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00760000119441 #31 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 ENSGT00940000165702 ENSGT01090000260018.B.b Afrotheria ANCESTRAL SPECIES 18 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 Afrotheria_a ANCESTRAL SPECIES 65 ENSGT00940000155381 ENSGT00940000159899 #7 ENSGT00390000004713 #8 ENSGT00940000161875 #9 ENSGT00940000158475 #10 ENSGT00940000161824 #11 ENSGT00510000047886.a #12 ENSGT00510000048486 #13 ENSGT00940000153560.b.b.a #14 ENSGT01060000248591.a.a.a.a #16 ENSGT00950000183188.A.b #17 ENSGT00390000017961 #18 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 Elephant MODERN SPECIES 403 ENSLAFG00000011948 #7 ENSLAFG00000026343 #8 ENSLAFG00000027808 #9 LMTK2 (ENSLAFG00000000137) #10 BHLHA15 (ENSLAFG00000000139) #11 TECPR1 (ENSLAFG00000021861) #12 BRI3 (ENSLAFG00000031280) #13 BAIAP2L1 (ENSLAFG00000011959) #14 NPTX2 (ENSLAFG00000008442) #16 TMEM130 (ENSLAFG00000030396) #17 ENSLAFG00000027562 #18 ENSLAFG00000013536 #18 SMURF1 (ENSLAFG00000012470) #19 KPNA7 (ENSLAFG00000005116) #20 ENSLAFG00000008336 ARPC1A (ENSLAFG00000014024) #21 ARPC1B (ENSLAFG00000014031) #22 PDAP1 (ENSLAFG00000014038) #23 ENSLAFG00000012201 #24 PTCD1 (ENSLAFG00000002588) CPSF4 (ENSLAFG00000000159) #26 SEPTIN14 (ENSLAFG00000004021) MRPS17 (ENSLAFG00000027907) NIPSNAP2 (ENSLAFG00000010936) PSPH (ENSLAFG00000010938) CCT6A (ENSLAFG00000012791) SUMF2 (ENSLAFG00000012794) PHKG1 (ENSLAFG00000012802) ENSLAFG00000012806 VKORC1L1 (ENSLAFG00000002079) GUSB (ENSLAFG00000022591) Hyrax MODERN SPECIES 634 ARPC1A (ENSPCAG00000004960) #21 Tenrec MODERN SPECIES 2653 ENSETEG00000009915 ENSETEG00000009919 #21 ARPC1B (ENSETEG00000009924) #22 PDAP1 (ENSETEG00000009926) #23 PTCD1 (ENSETEG00000009928) Xenarthra ANCESTRAL SPECIES 368 ENSGT00950000183183.b.a #21 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000163495 ENSGT00940000162347 #28 ENSGT00940000162299 #30 ENSGT00950000182890.B.b ENSGT00510000055200 ENSGT00940000162113 #32 Sloth MODERN SPECIES 812 ARPC1A (ENSCHOG00000008176) #21 Armadillo DUPLICATION Armadillo DUPLICATION Armadillo MODERN SPECIES 1954 ENSDNOG00000035654 ENSDNOG00000005984 #21 PDAP1 (ENSDNOG00000005922) #23 BUD31 (ENSDNOG00000005929) #24 PTCD1 (ENSDNOG00000009957) CPSF4 (ENSDNOG00000006344) #26 ENSDNOG00000006351 #27 ENSDNOG00000032779 ENSDNOG00000034120 ENSDNOG00000023955 ZNF789 (ENSDNOG00000045486) ZNF394 (ENSDNOG00000046086) #28 ZKSCAN5 (ENSDNOG00000007054) #30 ENSDNOG00000031913 ENSDNOG00000044963 TMEM225B (ENSDNOG00000037023) ZSCAN25 (ENSDNOG00000039854) #32 Armadillo MODERN SPECIES 3294 ENSDNOG00000032911 NUDT6 (ENSDNOG00000046961) FGF2 (ENSDNOG00000014648) BBS12 (ENSDNOG00000030640) IL21 (ENSDNOG00000024605) ENSDNOG00000031937 IL2 (ENSDNOG00000009005) ADAD1 (ENSDNOG00000014986) ENSDNOG00000046777 ENSDNOG00000009442 ENSDNOG00000042720 ENSDNOG00000031010 BBS7 (ENSDNOG00000010654) CCNA2 (ENSDNOG00000010635) EXOSC9 (ENSDNOG00000010614) ENSDNOG00000039550 #21 ANXA5 (ENSDNOG00000041581) ENSDNOG00000014416 QRFPR (ENSDNOG00000018386) Armadillo MODERN SPECIES 463 ENSDNOG00000031694 ENSDNOG00000045942 #21 ENSDNOG00000034529 GFRA1 (ENSDNOG00000034045) PNLIPRP3 (ENSDNOG00000001044) ENSDNOG00000008626 PNLIPRP2 (ENSDNOG00000033982) C10orf82 (ENSDNOG00000045239) HSPA12A (ENSDNOG00000049257) ENO4 (ENSDNOG00000024397) SHTN1 (ENSDNOG00000017153) Sauria ANCESTRAL SPECIES 12 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Archelosauria ANCESTRAL SPECIES 12 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Archosauria ANCESTRAL SPECIES 8 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Aves ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Neognathae ANCESTRAL SPECIES 10 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Neognathae_b ANCESTRAL SPECIES 12 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Passeriformes ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 Great tit MODERN SPECIES 5 ENSPMJG00000017388 ##34 ENSPMJG00000017389 #34 FOXK1 (ENSPMJG00000017390) AP5Z1 (ENSPMJG00000017391) RADIL (ENSPMJG00000017392) MMD2 (ENSPMJG00000017393) WIPI2 (ENSPMJG00000017394) SLC29A4 (ENSPMJG00000017395) TNRC18 (ENSPMJG00000017396) FBXL18 (ENSPMJG00000017399) ACTB (ENSPMJG00000017400) FSCN1 (ENSPMJG00000017401) RNF216 (ENSPMJG00000017402) SMURF1 (ENSPMJG00000017403) #19 KPNA7 (ENSPMJG00000017404) #20 ARPC1A (ENSPMJG00000017406) #21 ARPC1B (ENSPMJG00000017407) #22 PDAP1 (ENSPMJG00000017408) #23 BUD31 (ENSPMJG00000017409) #24 PTCD1 (ENSPMJG00000017410) CPSF4 (ENSPMJG00000017411) #26 ATP5MF (ENSPMJG00000017412) #27 ENSPMJG00000017413 MAP2K3 (ENSPMJG00000017414) NATD1 (ENSPMJG00000017415) ENSPMJG00000017416 ENSPMJG00000017417 DHRS7B (ENSPMJG00000017419) USP22 (ENSPMJG00000017420) TNFRSF13B (ENSPMJG00000017421) MPRIP (ENSPMJG00000017422) Passeriformes_d ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 Flycatcher MODERN SPECIES 5 ENSFALG00000013844 #34 FOXK1 (ENSFALG00000013841) AP5Z1 (ENSFALG00000013840) RADIL (ENSFALG00000013838) MMD2 (ENSFALG00000013836) WIPI2 (ENSFALG00000028204) SLC29A4 (ENSFALG00000013831) TNRC18 (ENSFALG00000013830) FBXL18 (ENSFALG00000013829) ACTB (ENSFALG00000013828) FSCN1 (ENSFALG00000013827) RNF216 (ENSFALG00000013825) ENSFALG00000014244 SMURF1 (ENSFALG00000013824) #19 KPNA7 (ENSFALG00000013820) #20 ARPC1A (ENSFALG00000013815) #21 PDAP1 (ENSFALG00000025682) #23 ENSFALG00000013804 #24 PTCD1 (ENSFALG00000013803) CPSF4 (ENSFALG00000024016) #26 ATP5MF (ENSFALG00000013801) #27 KCNJ12 (ENSFALG00000027206) MAP2K3 (ENSFALG00000013796) NATD1 (ENSFALG00000023203) TMEM11 (ENSFALG00000014240) DHRS7B (ENSFALG00000013793) USP22 (ENSFALG00000013792) TNFRSF13B (ENSFALG00000027584) MPRIP (ENSFALG00000013790) PLD6 (ENSFALG00000027587) FLCN (ENSFALG00000013783) Passeriformes_g ANCESTRAL SPECIES 12 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Passeroidea ANCESTRAL SPECIES 11 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300.o #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT00390000001055 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 Common canary MODERN SPECIES 17 ENSSCAG00000009185 ##34 ENSSCAG00000009176 #34 FOXK1 (ENSSCAG00000009164) AP5Z1 (ENSSCAG00000009139) RADIL (ENSSCAG00000009121) MMD2 (ENSSCAG00000009114) WIPI2 (ENSSCAG00000009100) SLC29A4 (ENSSCAG00000009090) ENSSCAG00000009080 FBXL18 (ENSSCAG00000009067) ACTB (ENSSCAG00000009060) FSCN1 (ENSSCAG00000009055) RNF216 (ENSSCAG00000009048) SMURF1 (ENSSCAG00000009043) #19 KPNA7 (ENSSCAG00000009027) #20 ARPC1A (ENSSCAG00000009009) #21 ARPC1B (ENSSCAG00000009006) #22 PDAP1 (ENSSCAG00000008999) #23 ENSSCAG00000008991 #24 PTCD1 (ENSSCAG00000008968) CPSF4 (ENSSCAG00000008956) #26 ENSSCAG00000008947 ENSSCAG00000008942 MAP2K3 (ENSSCAG00000008937) NATD1 (ENSSCAG00000008931) TMEM11 (ENSSCAG00000008929) DHRS7B (ENSSCAG00000008923) USP22 (ENSSCAG00000008918) TNFRSF13B (ENSSCAG00000008915) MPRIP (ENSSCAG00000008877) FLCN (ENSSCAG00000008865) Medium ground finch MODERN SPECIES 22 ENSGFOG00000009594 ##34 ENSGFOG00000009559 #34 FOXK1 (ENSGFOG00000009540) AP5Z1 (ENSGFOG00000009472) RADIL (ENSGFOG00000009439) MMD2 (ENSGFOG00000009429) WIPI2 (ENSGFOG00000009409) SLC29A4 (ENSGFOG00000009402) FBXL18 (ENSGFOG00000009340) ENSGFOG00000009329 FSCN1 (ENSGFOG00000009318) RNF216 (ENSGFOG00000009308) SMURF1 (ENSGFOG00000008634) #19 KPNA7 (ENSGFOG00000008572) #20 ARPC1B (ENSGFOG00000008561) #22 ARPC1A (ENSGFOG00000008549) #21 PDAP1 (ENSGFOG00000008542) #23 ENSGFOG00000008538 #24 PTCD1 (ENSGFOG00000008525) CPSF4 (ENSGFOG00000008516) #26 ENSGFOG00000008510 ENSGFOG00000008509 MAP2K3 (ENSGFOG00000008502) NATD1 (ENSGFOG00000008499) TMEM11 (ENSGFOG00000008494) Neognathae_c ANCESTRAL SPECIES 14 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Kakapo MODERN SPECIES 21 ENSSHBG00005009224 #34 FOXK1 (ENSSHBG00005009241) AP5Z1 (ENSSHBG00005009252) RADIL (ENSSHBG00005009272) MMD2 (ENSSHBG00005009293) WIPI2 (ENSSHBG00005009312) SLC29A4 (ENSSHBG00005009331) TNRC18 (ENSSHBG00005009360) FBXL18 (ENSSHBG00005009478) ACTB (ENSSHBG00005009495) FSCN1 (ENSSHBG00005009511) RNF216 (ENSSHBG00005009526) ENSSHBG00005009548 SMURF1 (ENSSHBG00005009565) #19 KPNA7 (ENSSHBG00005009584) #20 ARPC1A (ENSSHBG00005009628) #21 ARPC1B (ENSSHBG00005009647) #22 PDAP1 (ENSSHBG00005009661) #23 BUD31 (ENSSHBG00005009702) #24 PTCD1 (ENSSHBG00005009712) CPSF4 (ENSSHBG00005009724) #26 ATP5MF (ENSSHBG00005009739) #27 ENSSHBG00005009753 MAP2K3 (ENSSHBG00005009760) NATD1 (ENSSHBG00005009769) TMEM11 (ENSSHBG00005009779) DHRS7B (ENSSHBG00005009791) USP22 (ENSSHBG00005009835) TNFRSF13B (ENSSHBG00005009892) MPRIP (ENSSHBG00005009910) PLD6 (ENSSHBG00005009927) Golden eagle MODERN SPECIES 17 ENSACCG00020013358 #34 FOXK1 (ENSACCG00020013339) AP5Z1 (ENSACCG00020013298) RADIL (ENSACCG00020013236) MMD2 (ENSACCG00020013196) WIPI2 (ENSACCG00020013177) SLC29A4 (ENSACCG00020013147) TNRC18 (ENSACCG00020013096) FBXL18 (ENSACCG00020013037) ACTB (ENSACCG00020013020) FSCN1 (ENSACCG00020012998) RNF216 (ENSACCG00020012969) ENSACCG00020012955 SMURF1 (ENSACCG00020012938) #19 KPNA7 (ENSACCG00020012868) #20 ARPC1A (ENSACCG00020012791) #21 ARPC1B (ENSACCG00020012730) #22 PDAP1 (ENSACCG00020012701) #23 BUD31 (ENSACCG00020012680) #24 PTCD1 (ENSACCG00020012652) CPSF4 (ENSACCG00020012629) #26 ATP5MF (ENSACCG00020012613) #27 ENSACCG00020012599 MAP2K3 (ENSACCG00020012553) NATD1 (ENSACCG00020012513) TMEM11 (ENSACCG00020012496) DHRS7B (ENSACCG00020012388) USP22 (ENSACCG00020012331) TNFRSF13B (ENSACCG00020012289) MPRIP (ENSACCG00020012175) PLD6 (ENSACCG00020012032) Galloanserae ANCESTRAL SPECIES 9 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Anatidae ANCESTRAL SPECIES 7 ENSGT00950000182958.a.b.a ##34 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293.c ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Pink-footed goose MODERN SPECIES 59 ENSABRG00000002537 ##34 ENSABRG00000002324 #34 FOXK1 (ENSABRG00000002286) AP5Z1 (ENSABRG00000002241) RADIL (ENSABRG00000002193) MMD2 (ENSABRG00000002148) WIPI2 (ENSABRG00000002125) SLC29A4 (ENSABRG00000002112) TNRC18 (ENSABRG00000002069) FBXL18 (ENSABRG00000002032) ACTB (ENSABRG00000002004) ENSABRG00000001980 RNF216 (ENSABRG00000001919) SMURF1 (ENSABRG00000001864) #19 KPNA7 (ENSABRG00000001828) #20 ARPC1A (ENSABRG00000001764) #21 ARPC1B (ENSABRG00000001702) #22 PDAP1 (ENSABRG00000001687) #23 BUD31 (ENSABRG00000001589) #24 PTCD1 (ENSABRG00000001568) CPSF4 (ENSABRG00000001549) #26 ATP5MF (ENSABRG00000001534) #27 ENSABRG00000001514 MAP2K3 (ENSABRG00000001410) NATD1 (ENSABRG00000001319) TMEM11 (ENSABRG00000001303) DHRS7B (ENSABRG00000001258) USP22 (ENSABRG00000001162) TNFRSF13B (ENSABRG00000001137) MPRIP (ENSABRG00000000875) PLD6 (ENSABRG00000000855) Duck MODERN SPECIES 6 CARD11 (ENSAPLG00000003700) SDK1 (ENSAPLG00000004608) ENSAPLG00000005773 ##34 ENSAPLG00000007447 #34 FOXK1 (ENSAPLG00000009084) AP5Z1 (ENSAPLG00000009165) ENSAPLG00000026450 WIPI2 (ENSAPLG00000009715) SLC29A4 (ENSAPLG00000010012) TNRC18 (ENSAPLG00000028315) FBXL18 (ENSAPLG00000010121) ACTB (ENSAPLG00000010147) RNF216 (ENSAPLG00000010364) SMURF1 (ENSAPLG00000010476) #19 KPNA7 (ENSAPLG00000010767) #20 ARPC1A (ENSAPLG00000011059) #21 ARPC1B (ENSAPLG00000020035) #22 PDAP1 (ENSAPLG00000006542) #23 BUD31 (ENSAPLG00000006748) #24 PTCD1 (ENSAPLG00000006862) CPSF4 (ENSAPLG00000018571) #26 ATP5MF (ENSAPLG00000007021) #27 ENSAPLG00000027874 ENSAPLG00000026453 NATD1 (ENSAPLG00000007590) TMEM11 (ENSAPLG00000028416) DHRS7B (ENSAPLG00000007599) USP22 (ENSAPLG00000002524) TNFRSF13B (ENSAPLG00000021324) MPRIP (ENSAPLG00000030840) PLD6 (ENSAPLG00000004112) Phasianidae ANCESTRAL SPECIES 10 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032.a ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Japanese quail MODERN SPECIES 5 FOXK1 (ENSCJPG00005000229) AP5Z1 (ENSCJPG00005000241) RADIL (ENSCJPG00005000245) MMD2 (ENSCJPG00005000255) WIPI2 (ENSCJPG00005000267) SLC29A4 (ENSCJPG00005000281) TNRC18 (ENSCJPG00005000297) FBXL18 (ENSCJPG00005000327) ACTB (ENSCJPG00005000336) FSCN1 (ENSCJPG00005000395) RNF216 (ENSCJPG00005000414) ENSCJPG00005001323 SMURF1 (ENSCJPG00005001326) #19 ENSCJPG00005001328 KPNA7 (ENSCJPG00005001331) #20 ARPC1A (ENSCJPG00005001335) #21 ARPC1B (ENSCJPG00005001338) #22 PDAP1 (ENSCJPG00005001340) #23 BUD31 (ENSCJPG00005001343) #24 PTCD1 (ENSCJPG00005001347) CPSF4 (ENSCJPG00005001353) #26 ATP5MF (ENSCJPG00005001357) #27 ENSCJPG00005001360 MAP2K3 (ENSCJPG00005001368) NATD1 (ENSCJPG00005001379) TMEM11 (ENSCJPG00005001383) DHRS7B (ENSCJPG00005001385) USP22 (ENSCJPG00005001392) TNFRSF13B (ENSCJPG00005001394) MPRIP (ENSCJPG00005001400) PLD6 (ENSCJPG00005001422) Phasianidae_b ANCESTRAL SPECIES 10 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032.a ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Chicken MODERN SPECIES 5 CYP3A5 (ENSGALG00010017603) #34 FOXK1 (ENSGALG00010021144) AP5Z1 (ENSGALG00010021146) RADIL (ENSGALG00010021155) MMD2 (ENSGALG00010021159) WIPI2 (ENSGALG00010021162) SLC29A4 (ENSGALG00010021172) TNRC18 (ENSGALG00010021188) FBXL18 (ENSGALG00010021214) ACTB (ENSGALG00010021232) FSCN1 (ENSGALG00010021237) RNF216 (ENSGALG00010021251) ENSGALG00010021271 SMURF1 (ENSGALG00010021301) #19 KPNA7 (ENSGALG00010021313) #20 ARPC1A (ENSGALG00010021325) #21 ARPC1B (ENSGALG00010021362) #22 PDAP1 (ENSGALG00010021401) #23 BUD31 (ENSGALG00010021414) #24 PTCD1 (ENSGALG00010021424) CPSF4 (ENSGALG00010021431) #26 ATP5J2 (ENSGALG00010021454) #27 KCNJ12 (ENSGALG00010021526) MAP2K3 (ENSGALG00010021550) NATD1 (ENSGALG00010021573) TMEM11 (ENSGALG00010021610) DHRS7B (ENSGALG00010021629) USP22 (ENSGALG00010021655) TNFRSF13B (ENSGALG00010021671) MPRIP (ENSGALG00010021689) PLD6 (ENSGALG00010021702) Turkey MODERN SPECIES 7 FLCN (ENSMGAG00000004370) ENSMGAG00000004302 ENSMGAG00000004369 ENSMGAG00000019138 ENSMGAG00000004299 TNFRSF13B (ENSMGAG00000004358) ENSMGAG00000015545 ENSMGAG00000004263 NATD1 (ENSMGAG00000004258) ENSMGAG00000004264 ENSMGAG00000015541 CPSF4 (ENSMGAG00000004235) #26 ENSMGAG00000018852 #27 BUD31 (ENSMGAG00000004195) #24 ENSMGAG00000004211 ENSMGAG00000004113 #21 ENSMGAG00000004152 #22 PDAP1 (ENSMGAG00000004176) #23 KPNA7 (ENSMGAG00000004051) #20 ENSMGAG00000021321 ENSMGAG00000003976 ENSMGAG00000003983 #19 ENSMGAG00000003930 ENSMGAG00000016921 ENSMGAG00000003905 ENSMGAG00000018626 ENSMGAG00000003960 ENSMGAG00000003918 ENSMGAG00000021420 ENSMGAG00000003892 ENSMGAG00000003866 African ostrich MODERN SPECIES 989 RNF216 (ENSSCUG00000018343) ENSSCUG00000018342 SMURF1 (ENSSCUG00000018341) #19 KPNA7 (ENSSCUG00000018339) #20 ENSSCUG00000018338 ARPC1A (ENSSCUG00000018336) #21 PDAP1 (ENSSCUG00000018335) #23 BUD31 (ENSSCUG00000018334) #24 PTCD1 (ENSSCUG00000018329) CPSF4 (ENSSCUG00000018325) #26 ATP5MF (ENSSCUG00000018324) #27 ENSSCUG00000018322 MAP2K3 (ENSSCUG00000018318) NATD1 (ENSSCUG00000018315) TMEM11 (ENSSCUG00000018314) DHRS7B (ENSSCUG00000018313) USP22 (ENSSCUG00000018311) MPRIP (ENSSCUG00000018303) FLCN (ENSSCUG00000018296) COPS3 (ENSSCUG00000018292) MED9 (ENSSCUG00000018286) Australian saltwater crocodile MODERN SPECIES 46 ENSCPRG00005016322 #34 FOXK1 (ENSCPRG00005016315) AP5Z1 (ENSCPRG00005016292) RADIL (ENSCPRG00005016285) MMD2 (ENSCPRG00005016281) WIPI2 (ENSCPRG00005016270) SLC29A4 (ENSCPRG00005016263) FBXL18 (ENSCPRG00005016208) ACTB (ENSCPRG00005016203) FSCN1 (ENSCPRG00005016199) RNF216 (ENSCPRG00005016190) ENSCPRG00005016185 SMURF1 (ENSCPRG00005016127) #19 KPNA7 (ENSCPRG00005016120) #20 ENSCPRG00005016109 ARPC1A (ENSCPRG00005016070) #21 ARPC1B (ENSCPRG00005016064) #22 PDAP1 (ENSCPRG00005016062) #23 BUD31 (ENSCPRG00005016057) #24 PTCD1 (ENSCPRG00005016054) CPSF4 (ENSCPRG00005016053) #26 ATP5MF (ENSCPRG00005016051) #27 ENSCPRG00005016049 MAP2K3 (ENSCPRG00005016043) NATD1 (ENSCPRG00005016042) TMEM11 (ENSCPRG00005016040) DHRS7B (ENSCPRG00005016037) USP22 (ENSCPRG00005016028) TNFRSF13B (ENSCPRG00005016024) MPRIP (ENSCPRG00005016012) PLD6 (ENSCPRG00005016009) Cryptodira ANCESTRAL SPECIES 12 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Testudinoidea ANCESTRAL SPECIES 6 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 Emydidae ANCESTRAL SPECIES 12 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00510000046986 #27 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 painted turtle MODERN SPECIES 2421 FOXK1 (ENSCPBG00000020759) AP5Z1 (ENSCPBG00000020762) RADIL (ENSCPBG00000020765) MMD2 (ENSCPBG00000020769) WIPI2 (ENSCPBG00000020771) SLC29A4 (ENSCPBG00000020775) TNRC18 (ENSCPBG00000020786) FBXL18 (ENSCPBG00000020806) ACTB (ENSCPBG00000020809) FSCN1 (ENSCPBG00000020810) RNF216 (ENSCPBG00000020812) ENSCPBG00000020819 SMURF1 (ENSCPBG00000020821) #19 KPNA7 (ENSCPBG00000020833) #20 ENSCPBG00000020844 ARPC1A (ENSCPBG00000020854) #21 ARPC1B (ENSCPBG00000020858) #22 PDAP1 (ENSCPBG00000020862) #23 BUD31 (ENSCPBG00000020864) #24 PTCD1 (ENSCPBG00000020866) CPSF4 (ENSCPBG00000020869) #26 ATP5MF (ENSCPBG00000020871) #27 MAP2K3 (ENSCPBG00000020879) NATD1 (ENSCPBG00000020883) TMEM11 (ENSCPBG00000020885) DHRS7B (ENSCPBG00000020886) USP22 (ENSCPBG00000020888) TNFRSF13B (ENSCPBG00000020890) MPRIP (ENSCPBG00000020895) PLD6 (ENSCPBG00000020910) FLCN (ENSCPBG00000020915) Three-toed box turtle MODERN SPECIES 37 FOXK1 (ENSTMTG00000014689) AP5Z1 (ENSTMTG00000014674) RADIL (ENSTMTG00000014332) MMD2 (ENSTMTG00000014249) WIPI2 (ENSTMTG00000014221) SLC29A4 (ENSTMTG00000014089) TNRC18 (ENSTMTG00000013974) FBXL18 (ENSTMTG00000013950) ACTB (ENSTMTG00000013939) FSCN1 (ENSTMTG00000013932) RNF216 (ENSTMTG00000013919) ENSTMTG00000013912 SMURF1 (ENSTMTG00000013503) #19 KPNA7 (ENSTMTG00000013331) #20 ENSTMTG00000013213 ARPC1A (ENSTMTG00000013201) #21 ARPC1B (ENSTMTG00000013193) #22 PDAP1 (ENSTMTG00000013184) #23 BUD31 (ENSTMTG00000013181) #24 PTCD1 (ENSTMTG00000013170) CPSF4 (ENSTMTG00000013163) #26 ATP5MF (ENSTMTG00000018744) #27 ENSTMTG00000018727 MAP2K3 (ENSTMTG00000018672) NATD1 (ENSTMTG00000018661) TMEM11 (ENSTMTG00000018651) DHRS7B (ENSTMTG00000018635) USP22 (ENSTMTG00000018604) TNFRSF13B (ENSTMTG00000018580) MPRIP (ENSTMTG00000018449) PLD6 (ENSTMTG00000018425) Testudinidae ANCESTRAL SPECIES 13 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 Abingdon island giant tortoise MODERN SPECIES 914 ENSCABG00000019913 KPNA7 (ENSCABG00000019903) #20 ENSCABG00000019888 ARPC1A (ENSCABG00000019883) #21 ARPC1B (ENSCABG00000019881) #22 PDAP1 (ENSCABG00000019879) #23 BUD31 (ENSCABG00000019878) #24 PTCD1 (ENSCABG00000019877) CPSF4 (ENSCABG00000019876) #26 ENSCABG00000019873 ENSCABG00000019871 MAP2K3 (ENSCABG00000019870) NATD1 (ENSCABG00000019869) TMEM11 (ENSCABG00000019868) DHRS7B (ENSCABG00000019866) Goode s thornscrub tortoise MODERN SPECIES 1 FOXK1 (ENSGEVG00005007667) AP5Z1 (ENSGEVG00005007693) RADIL (ENSGEVG00005007727) MMD2 (ENSGEVG00005007758) WIPI2 (ENSGEVG00005007807) SLC29A4 (ENSGEVG00005007844) TNRC18 (ENSGEVG00005007897) FBXL18 (ENSGEVG00005007947) ACTB (ENSGEVG00005007981) FSCN1 (ENSGEVG00005007997) RNF216 (ENSGEVG00005008033) ENSGEVG00005008108 SMURF1 (ENSGEVG00005008131) #19 KPNA7 (ENSGEVG00005008225) #20 ENSGEVG00005008415 ARPC1A (ENSGEVG00005008567) #21 ARPC1B (ENSGEVG00005008587) #22 PDAP1 (ENSGEVG00005008608) #23 BUD31 (ENSGEVG00005008621) #24 PTCD1 (ENSGEVG00005008641) CPSF4 (ENSGEVG00005008657) #26 ENSGEVG00005008673 ENSGEVG00005008686 MAP2K3 (ENSGEVG00005008697) NATD1 (ENSGEVG00005008718) TMEM11 (ENSGEVG00005008733) DHRS7B (ENSGEVG00005008744) USP22 (ENSGEVG00005008766) TNFRSF13B (ENSGEVG00005008795) MPRIP (ENSGEVG00005008868) PLD6 (ENSGEVG00005009155) Chinese turtle MODERN SPECIES 264 ENSPSIG00000009282 #34 FOXK1 (ENSPSIG00000010095) AP5Z1 (ENSPSIG00000010154) RADIL (ENSPSIG00000010253) MMD2 (ENSPSIG00000010464) WIPI2 (ENSPSIG00000010520) SLC29A4 (ENSPSIG00000010626) TNRC18 (ENSPSIG00000010641) FBXL18 (ENSPSIG00000010848) ACTB (ENSPSIG00000010875) FSCN1 (ENSPSIG00000010881) RNF216 (ENSPSIG00000010937) ENSPSIG00000001738 SMURF1 (ENSPSIG00000010953) #19 ENSPSIG00000010963 ARPC1A (ENSPSIG00000011034) #21 PDAP1 (ENSPSIG00000011087) #23 BUD31 (ENSPSIG00000011153) #24 PTCD1 (ENSPSIG00000011184) CPSF4 (ENSPSIG00000011229) #26 ATP5MF (ENSPSIG00000011253) #27 ENSPSIG00000001742 MAP2K3 (ENSPSIG00000011264) Lepidosauria ANCESTRAL SPECIES 22 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000155286 ENSGT00390000004368 tuatara MODERN SPECIES 1383 AP5Z1 (ENSSPUG00000002637) RADIL (ENSSPUG00000002651) MMD2 (ENSSPUG00000002669) WIPI2 (ENSSPUG00000002705) SLC29A4 (ENSSPUG00000002730) TNRC18 (ENSSPUG00000002773) FBXL18 (ENSSPUG00000002840) ACTB (ENSSPUG00000002859) FSCN1 (ENSSPUG00000002887) ENSSPUG00000002901 ENSSPUG00000002931 ENSSPUG00000002956 SMURF1 (ENSSPUG00000002982) #19 KPNA7 (ENSSPUG00000003169) #20 ENSSPUG00000003424 ARPC1A (ENSSPUG00000003489) #21 ARPC1B (ENSSPUG00000003501) #22 PDAP1 (ENSSPUG00000003518) #23 BUD31 (ENSSPUG00000003523) #24 PTCD1 (ENSSPUG00000003540) CPSF4 (ENSSPUG00000003549) #26 ENSSPUG00000003555 ENSSPUG00000003583 MAP2K3 (ENSSPUG00000003597) NATD1 (ENSSPUG00000003604) TMEM11 (ENSSPUG00000003610) DHRS7B (ENSSPUG00000003613) USP22 (ENSSPUG00000003619) ENSSPUG00000003638 MPRIP (ENSSPUG00000003643) PLD6 (ENSSPUG00000003666) Episquamata ANCESTRAL SPECIES 8 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 Toxicofera ANCESTRAL SPECIES 14 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT01030000234534.C ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 Elapidae ANCESTRAL SPECIES 1 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b.cb ENSGT00950000183157.a.a.b.bb ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875.a ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 Indian cobra MODERN SPECIES 15 FOXK1 (ENSNNAG00000009066) AP5Z1 (ENSNNAG00000008991) RADIL (ENSNNAG00000008297) MMD2 (ENSNNAG00000008226) WIPI2 (ENSNNAG00000008185) SLC29A4 (ENSNNAG00000008031) TNRC18 (ENSNNAG00000007985) FBXL18 (ENSNNAG00000007962) ACTB (ENSNNAG00000007940) ENSNNAG00000016321 ENSNNAG00000016312 RNF216 (ENSNNAG00000016285) SMURF1 (ENSNNAG00000016275) #19 KPNA7 (ENSNNAG00000016223) #20 ENSNNAG00000016182 ARPC1A (ENSNNAG00000016149) #21 ARPC1B (ENSNNAG00000016131) #22 PDAP1 (ENSNNAG00000016121) #23 BUD31 (ENSNNAG00000016111) #24 PTCD1 (ENSNNAG00000016099) CPSF4 (ENSNNAG00000016093) #26 ENSNNAG00000016085 MAP2K3 (ENSNNAG00000016061) NATD1 (ENSNNAG00000016053) TMEM11 (ENSNNAG00000016047) DHRS7B (ENSNNAG00000016027) USP22 (ENSNNAG00000015976) ENSNNAG00000015960 ENSNNAG00000015935 GET4 (ENSNNAG00000015914) SUN1 (ENSNNAG00000015884) Elapidae_a ANCESTRAL SPECIES 3 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b.cb ENSGT00950000183157.a.a.b.bb ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875.a ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 Acanthophiinae ANCESTRAL SPECIES 2 ENSGT00950000182958.a.b.b.b #34 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b.cb ENSGT00950000183157.a.a.b.bb ENSGT00510000048032 ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875.a ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 ENSGT00940000155698.A Mainland tiger snake MODERN SPECIES 241 FSCN1 (ENSNSUG00000014196) RNF216 (ENSNSUG00000014123) SMURF1 (ENSNSUG00000014122) #19 KPNA7 (ENSNSUG00000014121) #20 ENSNSUG00000014120 ARPC1A (ENSNSUG00000014119) #21 ARPC1B (ENSNSUG00000014118) #22 CPSF4 (ENSNSUG00000014117) #26 ENSNSUG00000014116 ENSNSUG00000014115 ENSNSUG00000014114 TMEM11 (ENSNSUG00000014113) DHRS7B (ENSNSUG00000014112) USP22 (ENSNSUG00000014111) TNFRSF13B (ENSNSUG00000014110) ENSNSUG00000014109 COX19 (ENSNSUG00000014108) ADAP1 (ENSNSUG00000014107) GET4 (ENSNSUG00000014106) ENSNSUG00000014105 ENSNSUG00000014104 Eastern brown snake MODERN SPECIES 24 ENSPTXG00000006776 #34 FOXK1 (ENSPTXG00000006769) AP5Z1 (ENSPTXG00000006766) RADIL (ENSPTXG00000006655) SLC29A4 (ENSPTXG00000006654) ENSPTXG00000006652 ENSPTXG00000006651 FBXL18 (ENSPTXG00000006650) ACTB (ENSPTXG00000006649) ENSPTXG00000006648 ENSPTXG00000006647 ENSPTXG00000006646 SMURF1 (ENSPTXG00000006645) #19 KPNA7 (ENSPTXG00000006643) #20 ENSPTXG00000006641 ARPC1A (ENSPTXG00000006639) #21 ARPC1B (ENSPTXG00000006637) #22 BUD31 (ENSPTXG00000006636) #24 PTCD1 (ENSPTXG00000006635) CPSF4 (ENSPTXG00000006634) #26 ENSPTXG00000006632 ENSPTXG00000006631 ENSPTXG00000006628 NATD1 (ENSPTXG00000006626) TMEM11 (ENSPTXG00000006624) DHRS7B (ENSPTXG00000006623) USP22 (ENSPTXG00000006622) TNFRSF13B (ENSPTXG00000006619) ENSPTXG00000006618 COX19 (ENSPTXG00000006615) DNAAF5 (ENSPTXG00000006614) Blue-lipped sea krait MODERN SPECIES 2816 SMURF1 (ENSLLTG00000001102) #19 KPNA7 (ENSLLTG00000001140) #20 ENSLLTG00000001193 ARPC1A (ENSLLTG00000001243) #21 ARPC1B (ENSLLTG00000001264) #22 PDAP1 (ENSLLTG00000001279) #23 BUD31 (ENSLLTG00000001290) #24 PTCD1 (ENSLLTG00000001300) CPSF4 (ENSLLTG00000001315) #26 Lizard MODERN SPECIES 1327 FSCN1 (ENSACAG00000038737) ENSACAG00000011713 ENSACAG00000026600 SMURF1 (ENSACAG00000011792) #19 ENSACAG00000011927 ARPC1A (ENSACAG00000012777) #21 ENSACAG00000038015 ##22 PDAP1 (ENSACAG00000038752) #23 BUD31 (ENSACAG00000012867) #24 PTCD1 (ENSACAG00000012871) CPSF4 (ENSACAG00000042948) #26 ATP5MF (ENSACAG00000035548) #27 Laterata ANCESTRAL SPECIES 22 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a.a.a.b ENSGT00950000183157.a.a.b ENSGT00510000048032 ENSGT00940000156819.a.b ENSGT00940000158690 #19 ENSGT01050000244891.B #20 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00390000006617 ENSGT00940000158171 ENSGT00940000156623 ENSGT00390000013910 ENSGT00940000167116 ENSGT00390000016895 Argentine black and white tegu MODERN SPECIES 103 FOXK1 (ENSSMRG00000020272) AP5Z1 (ENSSMRG00000020271) RADIL (ENSSMRG00000020270) MMD2 (ENSSMRG00000020268) WIPI2 (ENSSMRG00000020266) SLC29A4 (ENSSMRG00000020264) TNRC18 (ENSSMRG00000020258) FBXL18 (ENSSMRG00000020254) ACTB (ENSSMRG00000020253) FSCN1 (ENSSMRG00000020250) RNF216 (ENSSMRG00000020248) ENSSMRG00000020246 SMURF1 (ENSSMRG00000020244) #19 KPNA7 (ENSSMRG00000020136) #20 ENSSMRG00000020128 ARPC1A (ENSSMRG00000020127) #21 ARPC1B (ENSSMRG00000020124) #22 PDAP1 (ENSSMRG00000020122) #23 BUD31 (ENSSMRG00000020120) #24 PTCD1 (ENSSMRG00000020118) CPSF4 (ENSSMRG00000020117) #26 ENSSMRG00000020116 ENSSMRG00000020115 MAP2K3 (ENSSMRG00000020114) NATD1 (ENSSMRG00000020113) TMEM11 (ENSSMRG00000020112) DHRS7B (ENSSMRG00000020111) USP22 (ENSSMRG00000020110) ENSSMRG00000020109 ENSSMRG00000020107 COX19 (ENSSMRG00000020106) Common wall lizard MODERN SPECIES 5 SNN (ENSPMRG00000012802) TXNDC11 (ENSPMRG00000012797) ZC3H7A (ENSPMRG00000012786) ENSPMRG00000012779 ENSPMRG00000012777 BFAR (ENSPMRG00000023027) ENSPMRG00000023022 CLCN7 (ENSPMRG00000023016) ENSPMRG00000023011 PARN (ENSPMRG00000023002) ENSPMRG00000022996 ECI1 (ENSPMRG00000022991) ENSPMRG00000022975 #20 ENSPMRG00000022958 #20 ENSPMRG00000022939 ENSPMRG00000022932 #21 ARPC1B (ENSPMRG00000022924) #22 PDAP1 (ENSPMRG00000022918) #23 BUD31 (ENSPMRG00000022912) #24 PTCD1 (ENSPMRG00000022910) CPSF4 (ENSPMRG00000022904) #26 ENSPMRG00000022899 ENSPMRG00000022896 MAP2K3 (ENSPMRG00000022885) ENSPMRG00000022881 ENSPMRG00000022878 TMEM11 (ENSPMRG00000022875) DHRS7B (ENSPMRG00000022868) USP22 (ENSPMRG00000022858) ENSPMRG00000022852 ENSPMRG00000022841 Anura ANCESTRAL SPECIES 288 ENSGT00950000183183.b.a #21 ENSGT00950000183183.b.b #22 ENSGT00390000018509.a #23 ENSGT00390000014300 #24 ENSGT00940000153974.A ENSGT00940000155520 #26 ENSGT00940000165557 ENSGT01030000234586.A.a.b Frog MODERN SPECIES 9 ENSXETG00000043238 ENSXETG00000048598 ENSXETG00000046366 ENSXETG00000030743 ENSXETG00000044090 ENSXETG00000039174 ENSXETG00000046253 ENSXETG00000043701 luc7l (ENSXETG00000011562) fam234a (ENSXETG00000011563) mrpl28 (ENSXETG00000011564) usp22 (ENSXETG00000006051) dhrs7b (ENSXETG00000006052) ENSXETG00000046270 natd1 (ENSXETG00000024880) arpc1a (ENSXETG00000006057) #21 ENSXETG00000048691 arpc1b (ENSXETG00000006058) #22 bud31 (ENSXETG00000024872) #24 ENSXETG00000043374 ENSXETG00000044830 pdap1 (ENSXETG00000006062) #23 ENSXETG00000044515 card11 (ENSXETG00000045667) ENSXETG00000048008 ENSXETG00000044064 ENSXETG00000048709 ENSXETG00000045510 wipi2 (ENSXETG00000035921) ENSXETG00000042802 ENSXETG00000046117 Leishan spiny toad MODERN SPECIES 10 ENSLLEG00000018302 ENSLLEG00000017934 ENSLLEG00000017910 DNASE1L3 (ENSLLEG00000017824) ITGAV (ENSLLEG00000017273) CARD11 (ENSLLEG00000016801) FOXK1 (ENSLLEG00000016690) ENSLLEG00000016662 ENSLLEG00000016640 SLC29A4 (ENSLLEG00000016445) WIPI2 (ENSLLEG00000016159) SMURF1 (ENSLLEG00000028621) #19 ENSLLEG00000028588 ZC3H15 (ENSLLEG00000028373) KPNA7 (ENSLLEG00000028229) #20 ARPC1A (ENSLLEG00000028116) #21 ENSLLEG00000027985 #22 ENSLLEG00000027962 PDAP1 (ENSLLEG00000027924) #23 BUD31 (ENSLLEG00000027878) #24 PTCD1 (ENSLLEG00000027843) CPSF4 (ENSLLEG00000027717) #26 ENSLLEG00000027669 ENSLLEG00000027622 ENSLLEG00000027610 TMEM11 (ENSLLEG00000027583) NATD1 (ENSLLEG00000027541) DHRS7B (ENSLLEG00000027436) ENSLLEG00000027410 USP22 (ENSLLEG00000026537) ENSLLEG00000026383 Coelacanth MODERN SPECIES 345 TNRC18 (ENSLACG00000017249) FBXL18 (ENSLACG00000017111) ENSLACG00000017098 ENSLACG00000017094 ENSLACG00000016952 FSCN1 (ENSLACG00000016447) RNF216 (ENSLACG00000015715) ENSLACG00000015668 ENSLACG00000015251 ENSLACG00000014575 SMURF1 (ENSLACG00000014191) #19 KPNA7 (ENSLACG00000013531) #20 ENSLACG00000012445 ARPC1A (ENSLACG00000012158) #21 ARPC1B (ENSLACG00000011837) #22 PDAP1 (ENSLACG00000011502) #23 BUD31 (ENSLACG00000011373) #24 PTCD1 (ENSLACG00000011172) CPSF4 (ENSLACG00000010938) #26 atp5mf (ENSLACG00000010797) ENSLACG00000005568 Elephant shark MODERN SPECIES 1639 prkrip1 (ENSCMIG00000017699) PTCD1 (ENSCMIG00000017705) cpsf4 (ENSCMIG00000017708) #26 ENSCMIG00000017710 slc29a4a (ENSCMIG00000017711) ENSCMIG00000017715 TNRC18 (ENSCMIG00000017724) fbxl18 (ENSCMIG00000017737) fscn1a (ENSCMIG00000017739) ENSCMIG00000017741 ENSCMIG00000017845 kpna7 (ENSCMIG00000018017) #20 ENSCMIG00000018097 smurf1 (ENSCMIG00000018269) #19 ENSCMIG00000018292 arpc1a (ENSCMIG00000018301) #21 arpc1b (ENSCMIG00000018310) #22 wipi2 (ENSCMIG00000018316) ENSCMIG00000018328 radil (ENSCMIG00000018329)