Murinae	ANCESTRAL SPECIES	1	ENSGT00390000002231.c #8	ENSGT00390000005090 #9	ENSGT00940000165014 #10	ENSGT00910000144368	ENSGT00940000156141.C #11	ENSGT00950000182859.A.a.a.a #12	ENSGT00950000182989.D.a.b #13	ENSGT00940000153534.B #14	ENSGT01050000244942.b.a.b #15	ENSGT00940000155052.e.a #16	ENSGT01050000244866.A.a.a.a.a #17	ENSGT01050000244866.A.a.a.a.b #18	ENSGT00940000158197 #19	ENSGT00950000183149.B #20	ENSGT00960000186656.a.a.a.a.a.b.eb #21	ENSGT00960000186656.a.a.a.a.b #22	ENSGT00950000182943.jb #23	ENSGT00390000013353 #24	ENSGT00530000063691.a #25	ENSGT00390000014879.c.a #26	ENSGT00390000007919 #27	ENSGT00950000183132.B #28	ENSGT00940000161907 #29	ENSGT01030000234543.E #30	ENSGT00940000157396 #31	ENSGT00860000135854	ENSGT00940000161918 #32	ENSGT00830000128368.a #33	ENSGT00940000156844.b #34	ENSGT00940000155669 #35	ENSGT00390000016757 #36
Mus	ANCESTRAL SPECIES	1	ENSGT00390000002231.c #8	ENSGT00390000005090 #9	ENSGT00940000165014 #10	ENSGT00910000144368	ENSGT00940000156141.C #11	ENSGT00950000182859.A.a.a.a #12	ENSGT00950000182989.D.a.b #13	ENSGT00940000153534.B #14	ENSGT01050000244942.b.a.b #15	ENSGT00940000155052.e.a #16	ENSGT01050000244866.A.a.a.a.a #17	ENSGT01050000244866.A.a.a.a.b #18	ENSGT00940000158197 #19	ENSGT00950000183149.B #20	ENSGT00960000186656.a.a.a.a.a.b.eb #21	ENSGT00960000186656.a.a.a.a.b #22	ENSGT00950000182943.jb #23	ENSGT00390000013353 #24	ENSGT00530000063691.a #25	ENSGT00390000014879.c.a #26	ENSGT00390000007919 #27	ENSGT00950000183132.B #28	ENSGT00940000161907 #29	ENSGT01030000234543.E #30	ENSGT00940000157396 #31	ENSGT00860000135854	ENSGT00940000161918 #32	ENSGT00830000128368.a #33	ENSGT00940000156844.b #34	ENSGT00940000155669 #35	ENSGT00390000016757 #36
Mus_A	ANCESTRAL SPECIES		ENSGT00390000002231.c #8	ENSGT00390000005090 #9	ENSGT00940000165014 #10	ENSGT00910000144368	ENSGT00940000156141.C #11	ENSGT00950000182859.A.a.a.a #12	ENSGT00950000182989.D.a.b #13	ENSGT00940000153534.B #14	ENSGT01050000244942.b.a.b #15	ENSGT00940000155052.e.a #16	ENSGT01050000244866.A.a.a.a.a #17	ENSGT01050000244866.A.a.a.a.b #18	ENSGT00940000158197 #19	ENSGT00950000183149.B #20	ENSGT00960000186656.a.a.a.a.a.b.eb #21	ENSGT00960000186656.a.a.a.a.b #22	ENSGT00950000182943.jb #23	ENSGT00390000013353 #24	ENSGT00530000063691.a #25	ENSGT00390000014879.c.a #26	ENSGT00390000007919.i #27	ENSGT00950000183132.B #28	ENSGT00940000161907 #29	ENSGT01030000234543.E #30	ENSGT00940000157396 #31	ENSGT00860000135854	ENSGT00940000161918 #32	ENSGT00830000128368.a #33	ENSGT00940000156844.b #34	ENSGT00940000155669 #35	ENSGT00390000016757 #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000002231.c #8	ENSGT00390000005090 #9	ENSGT00940000165014 #10	ENSGT00910000144368	ENSGT00940000156141.C #11	ENSGT00950000182859.A.a.a.a #12	ENSGT00950000182989.D.a.b #13	ENSGT00940000153534.B #14	ENSGT01050000244942.b.a.b #15	ENSGT00940000155052.e.a #16	ENSGT01050000244866.A.a.a.a.a #17	ENSGT01050000244866.A.a.a.a.b #18	ENSGT00940000158197 #19	ENSGT00950000183149.B #20	ENSGT00960000186656.a.a.a.a.a.b.eb #21	ENSGT00960000186656.a.a.a.a.b #22	ENSGT00950000182943.jb #23	ENSGT00390000013353 #24	ENSGT00530000063691.a #25	ENSGT00390000014879.c.a #26	ENSGT00390000007919.i #27	ENSGT00950000183132.B #28	ENSGT00940000161907 #29	ENSGT01030000234543.E #30	ENSGT00940000157396 #31	ENSGT00860000135854	ENSGT00940000161918 #32	ENSGT00830000128368.a #33	ENSGT00940000156844.b #34	ENSGT00940000155669 #35	ENSGT00390000016757 #36
Mouse	MODERN SPECIES	11	Vps16 (ENSMUSG00000027411) #7	Pced1a (ENSMUSG00000037773) #8	Tmem239 (ENSMUSG00000049692) #9	1700020A23Rik (ENSMUSG00000027409) #10	Cpxm1 (ENSMUSG00000027408) #11	Ebf4 (ENSMUSG00000053552) #12	Idh3b (ENSMUSG00000027406) #13	Nop56 (ENSMUSG00000027405) #14	Tmc2 (ENSMUSG00000060332) #15	Snrpb (ENSMUSG00000027404) #16	Tgm6 (ENSMUSG00000027403) #17	Tgm3 (ENSMUSG00000027401) #18	Stk35 (ENSMUSG00000037885) #19	Pdyn (ENSMUSG00000027400) #20	Sirpa (ENSMUSG00000037902) #21	F830045P16Rik (ENSMUSG00000043727) #22	Il1b (ENSMUSG00000027398) #23	Il1a (ENSMUSG00000027399) #24	Ckap2l (ENSMUSG00000048327) #25	Slc20a1 (ENSMUSG00000027397) #26	Chchd5 (ENSMUSG00000037938) #27	Polr1b (ENSMUSG00000027395) #28	Ttl (ENSMUSG00000027394) #29	Vinac1 (ENSMUSG00000079051) #30	Zc3h6 (ENSMUSG00000042851) #31	Zc3h8 (ENSMUSG00000027387) #32	Fbln7 (ENSMUSG00000027386) #33	Tmem87b (ENSMUSG00000014353) #34	Mertk (ENSMUSG00000014361) #35	Anapc1 (ENSMUSG00000014355) #36	Spdye4c (ENSMUSG00000074812) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00390000002231.c #8	ENSGT00390000005090 #9	ENSGT00940000165014 #10	ENSGT00910000144368	ENSGT00940000156141.C #11	ENSGT00950000182859.A.a.a.a #12	ENSGT00950000182989.D.a.b #13	ENSGT00940000153534.B #14	ENSGT01050000244942.b.a.b #15	ENSGT00940000155052.e.a #16	ENSGT01050000244866.A.a.a.a.a #17	ENSGT01050000244866.A.a.a.a.b #18	ENSGT00940000158197 #19	ENSGT00950000183149.B #20	ENSGT00960000186656.a.a.a.a.a.b.eb #21	ENSGT00960000186656.a.a.a.a.b #22	ENSGT00950000182943.jb #23	ENSGT00390000013353 #24	ENSGT00530000063691.a #25	ENSGT00390000014879.c.a #26	ENSGT00390000007919.i #27	ENSGT00950000183132.B #28	ENSGT00940000161907 #29	ENSGT01030000234543.E #30	ENSGT00940000157396 #31	ENSGT00860000135854	ENSGT00940000161918 #32	ENSGT00830000128368.a #33	ENSGT00940000156844.b #34	ENSGT00940000155669 #35	ENSGT00390000016757 #36
Steppe mouse	MODERN SPECIES	3100	Tmem239 (ENSMSIG00000013056) #9	1700020A23Rik (ENSMSIG00000013042) #10	Cpxm1 (ENSMSIG00000012969) #11	Ebf4 (ENSMSIG00000012856) #12	ENSMSIG00000012850	Idh3b (ENSMSIG00000012771) #13	Nop56 (ENSMSIG00000012714) #14	Tmc2 (ENSMSIG00000012652) #15	Snrpb (ENSMSIG00000012633) #16	Tgm6 (ENSMSIG00000012611) #17	ENSMSIG00000012594	Tgm3 (ENSMSIG00000012513) #18	Stk35 (ENSMSIG00000012494) #19	Pdyn (ENSMSIG00000012464) #20	Sirpa (ENSMSIG00000012006) #21	F830045P16Rik (ENSMSIG00000011980) #22	ENSMSIG00000011970	ENSMSIG00000011966	Il1b (ENSMSIG00000011938) #23
spretus	MODERN SPECIES	11	Tmem239 (MGP_SPRETEiJ_G0025221) #9	1700020A23Rik (MGP_SPRETEiJ_G0025220) #10	MGP_SPRETEiJ_G0025219	Cpxm1 (MGP_SPRETEiJ_G0025218) #11	Ebf4 (MGP_SPRETEiJ_G0025217) #12	Idh3b (MGP_SPRETEiJ_G0025216) #13	Nop56 (MGP_SPRETEiJ_G0025215) #14	Tmc2 (MGP_SPRETEiJ_G0025214) #15	Snrpb (MGP_SPRETEiJ_G0025213) #16	Tgm6 (MGP_SPRETEiJ_G0025212) #17	Tgm3 (MGP_SPRETEiJ_G0025211) #18	Stk35 (MGP_SPRETEiJ_G0025210) #19	Pdyn (MGP_SPRETEiJ_G0025209) #20	Sirpa (MGP_SPRETEiJ_G0025208) #21	Il1b (MGP_SPRETEiJ_G0025207) #23	F830045P16Rik (MGP_SPRETEiJ_G0025206) #22	Il1a (MGP_SPRETEiJ_G0025205) #24	Ckap2l (MGP_SPRETEiJ_G0025204) #25	Slc20a1 (MGP_SPRETEiJ_G0025203) #26	Chchd5 (MGP_SPRETEiJ_G0025202) #27	Polr1b (MGP_SPRETEiJ_G0025201) #28	Ttl (MGP_SPRETEiJ_G0025200) #29	MGP_SPRETEiJ_G0025199 #30	Zc3h6 (MGP_SPRETEiJ_G0025198) #31	MGP_SPRETEiJ_G0025197	Zc3h8 (MGP_SPRETEiJ_G0025196) #32	Fbln7 (MGP_SPRETEiJ_G0025195) #33	Tmem87b (MGP_SPRETEiJ_G0025194) #34	Mertk (MGP_SPRETEiJ_G0025193) #35	Anapc1 (MGP_SPRETEiJ_G0025192) #36	MGP_SPRETEiJ_G0025191 #37
Ryukyu mouse	MODERN SPECIES	11	Pced1a (MGP_CAROLIEiJ_G0024302) #8	Tmem239 (MGP_CAROLIEiJ_G0024301) #9	1700020A23Rik (MGP_CAROLIEiJ_G0024300) #10	MGP_CAROLIEiJ_G0024299	Cpxm1 (MGP_CAROLIEiJ_G0024298) #11	Ebf4 (MGP_CAROLIEiJ_G0024297) #12	Idh3b (MGP_CAROLIEiJ_G0024296) #13	Nop56 (MGP_CAROLIEiJ_G0024295) #14	Tmc2 (MGP_CAROLIEiJ_G0024294) #15	Snrpb (MGP_CAROLIEiJ_G0024293) #16	Tgm6 (MGP_CAROLIEiJ_G0024292) #17	Tgm3 (MGP_CAROLIEiJ_G0024291) #18	Stk35 (MGP_CAROLIEiJ_G0024290) #19	Pdyn (MGP_CAROLIEiJ_G0024289) #20	Sirpa (MGP_CAROLIEiJ_G0024288) #21	F830045P16Rik (MGP_CAROLIEiJ_G0024287) #22	Il1b (MGP_CAROLIEiJ_G0024286) #23	Il1a (MGP_CAROLIEiJ_G0024285) #24	Ckap2l (MGP_CAROLIEiJ_G0024284) #25	Slc20a1 (MGP_CAROLIEiJ_G0024283) #26	Chchd5 (MGP_CAROLIEiJ_G0024282) #27	Polr1b (MGP_CAROLIEiJ_G0024281) #28	Ttl (MGP_CAROLIEiJ_G0024280) #29	MGP_CAROLIEiJ_G0024279 #30	Zc3h6 (MGP_CAROLIEiJ_G0024278) #31	MGP_CAROLIEiJ_G0024277	Zc3h8 (MGP_CAROLIEiJ_G0024276) #32	Fbln7 (MGP_CAROLIEiJ_G0024275) #33	Tmem87b (MGP_CAROLIEiJ_G0024274) #34	Mertk (MGP_CAROLIEiJ_G0024273) #35	Anapc1 (MGP_CAROLIEiJ_G0024272) #36
Shrew mouse	MODERN SPECIES	16	Pced1a (MGP_PahariEiJ_G0025747) #8	Tmem239 (MGP_PahariEiJ_G0025746) #9	1700020A23Rik (MGP_PahariEiJ_G0025745) #10	MGP_PahariEiJ_G0025744	Cpxm1 (MGP_PahariEiJ_G0025743) #11	Ebf4 (MGP_PahariEiJ_G0025742) #12	Idh3b (MGP_PahariEiJ_G0025741) #13	Nop56 (MGP_PahariEiJ_G0025740) #14	Tmc2 (MGP_PahariEiJ_G0025739) #15	Snrpb (MGP_PahariEiJ_G0025738) #16	Tgm6 (MGP_PahariEiJ_G0025737) #17	Tgm3 (MGP_PahariEiJ_G0025736) #18	Stk35 (MGP_PahariEiJ_G0025735) #19	Pdyn (MGP_PahariEiJ_G0025734) #20	Sirpa (MGP_PahariEiJ_G0025733) #21	F830045P16Rik (MGP_PahariEiJ_G0025732) #22	Il1b (MGP_PahariEiJ_G0025731) #23	Il1a (MGP_PahariEiJ_G0025730) #24	Ckap2l (MGP_PahariEiJ_G0025729) #25	Slc20a1 (MGP_PahariEiJ_G0025728) #26	Chchd5 (MGP_PahariEiJ_G0025727) #27	Polr1b (MGP_PahariEiJ_G0025726) #28	Ttl (MGP_PahariEiJ_G0025725) #29	MGP_PahariEiJ_G0025724 #30	Zc3h6 (MGP_PahariEiJ_G0025723) #31	MGP_PahariEiJ_G0025722	Zc3h8 (MGP_PahariEiJ_G0025721) #32	Fbln7 (MGP_PahariEiJ_G0025720) #33	Tmem87b (MGP_PahariEiJ_G0025719) #34	Mertk (MGP_PahariEiJ_G0025718) #35	Anapc1 (MGP_PahariEiJ_G0025717) #36
Rat	MODERN SPECIES	13	Tmem239 (ENSRNOG00000047004) #9	Cpxm1 (ENSRNOG00000021220) #11	Ebf4 (ENSRNOG00000007408) #12	Rps12l3 (ENSRNOG00000033913)	AABR07053734.1 (ENSRNOG00000031034)	Idh3b (ENSRNOG00000007316) #13	Nop56 (ENSRNOG00000007128) #14	Tmc2 (ENSRNOG00000007017) #15	Snrpb (ENSRNOG00000006961) #16	Tgm6 (ENSRNOG00000006830) #17	Tgm3 (ENSRNOG00000006753) #18	Stk35 (ENSRNOG00000006002) #19	AABR07053716.1 (ENSRNOG00000029173)	Pdyn (ENSRNOG00000026036) #20	Sirpa (ENSRNOG00000004763) #21	Sirpb3 (ENSRNOG00000026061) #22	Il1b (ENSRNOG00000004649) #23	Il1a (ENSRNOG00000004575) #24	Ckap2l (ENSRNOG00000026143) #25	Slc20a1 (ENSRNOG00000018567) #26	Chchd5 (ENSRNOG00000018491) #27	Polr1b (ENSRNOG00000018349) #28	Ttl (ENSRNOG00000018205) #29	RGD1561442 (ENSRNOG00000068184) #30	Zc3h6 (ENSRNOG00000026277) #31	Zc3h8 (ENSRNOG00000017647) #32	Fbln7 (ENSRNOG00000017550) #33	Tmem87b (ENSRNOG00000017443) #34	Mertk (ENSRNOG00000017319) #35	Anapc1 (ENSRNOG00000016965) #36	Spdye4c (ENSRNOG00000037081) #37