> Amniota [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Mammalia [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Theria [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Eutheria [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Boreoeutheria [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Euarchontoglires [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Euarchontoglires_A [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Glires [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Lagomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Pika [REFERENCESPECIES]
>> CHROMOSOME 959
SYNTENIC BLOCK FROM ENSOPRG00000004018 #12 TO ENSOPRG00000004116 #18
> Rabbit [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM HOXD11 (ENSOCUG00000013942) #12 TO HOXD1 (ENSOCUG00000015582) #18
> Rodentia [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Rodentia_A [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Hystricomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 20
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Hystricomorpha_a [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Guinea pig [MODERNSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSCPOG00000019766 #12 TO HOXD1 (ENSCPOG00000005509) #18 [REVERSED]
> Hystricomorpha_b [ANCESTRALSPECIES]
>> CHROMOSOME 24
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Degu [MODERNSPECIES]
>> CHROMOSOME 106
SYNTENIC BLOCK FROM ENSODEG00000010934 #12 TO HOXD1 (ENSODEG00000008961) #18 [REVERSED]
> Long-tailed chinchilla [MODERNSPECIES]
>> CHROMOSOME 110
SYNTENIC BLOCK FROM ENSCLAG00000012563 #12 TO HOXD1 (ENSCLAG00000012505) #18 [REVERSED]
> Naked mole-rat female [MODERNSPECIES]
>> CHROMOSOME 22

DISTANT LINK BETWEEN HOXD11 (ENSHGLG00000034527) #540 AND HOXD10 (ENSHGLG00000033462) #538


DISTANT LINK BETWEEN HOXD9 (ENSHGLG00000007185) #541 AND ENSHGLG00000003577 #539
SYNTENIC BLOCK FROM ENSHGLG00000003577 #15 TO HOXD1 (ENSHGLG00000004072) #18
> Sciuridae [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Eurasian red squirrel [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM HOXD11 (ENSSVLG00005003581) #12 TO HOXD4 (ENSSVLG00005003676) #16
ADJACENCY BETWEEN HOXD4 (ENSSVLG00005003676) #16 AND HOXD1 (ENSSVLG00005003762) #18

> Marmotini [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Alpin marmot [MODERNSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSMMMG00000023762 #12 TO HOXD3 (ENSMMMG00000023768) #17
> Marmotini_b [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Squirrel [MODERNSPECIES]
>> CHROMOSOME 109
SYNTENIC BLOCK FROM HOXD10 (ENSSTOG00000003935) #13 TO HOXD1 (ENSSTOG00000012230) #18
> Arctic ground squirrel [MODERNSPECIES]
>> CHROMOSOME 323
SYNTENIC BLOCK FROM HOXD11 (ENSUPAG00010020439) #12 TO HOXD1 (ENSUPAG00010020407) #18 [REVERSED]
> Rodentia_B [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Myomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Muroidea [ANCESTRALSPECIES]
>> CHROMOSOME 34
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Upper Galilee mountains blind mole rat [MODERNSPECIES]
>> CHROMOSOME 1735
SYNTENIC BLOCK FROM Hoxd11 (ENSNGAG00000023438) #12 TO Hoxd1 (ENSNGAG00000021714) #18
> Muroidea_A [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Murinae [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Rat [MODERNSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM Hoxd11 (ENSRNOG00000069591) #12 TO Hoxd4 (ENSRNOG00000001578) #16
DISTANT LINK BETWEEN Hoxd4 (ENSRNOG00000001578) #534 AND Hoxd3 (ENSRNOG00000001577) #532
SYNTENIC BLOCK FROM Hoxd3 (ENSRNOG00000001577) #17 TO Hoxd1 (ENSRNOG00000001572) #18
> Mus [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Shrew mouse [MODERNSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM Hoxd11 (MGP_PahariEiJ_G0025121) #12 TO Hoxd8 (MGP_PahariEiJ_G0025124) #15
DISTANT LINK BETWEEN Hoxd8 (MGP_PahariEiJ_G0025124) #487 AND Hoxd4 (MGP_PahariEiJ_G0025126) #485



DISTANT LINK BETWEEN Hoxd3 (MGP_PahariEiJ_G0025125) #489 AND Hoxd1 (MGP_PahariEiJ_G0025128) #486

> Mus_A [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Ryukyu mouse [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM Hoxd11 (MGP_CAROLIEiJ_G0023669) #12 TO Hoxd8 (MGP_CAROLIEiJ_G0023672) #15
DISTANT LINK BETWEEN Hoxd8 (MGP_CAROLIEiJ_G0023672) #543 AND Hoxd4 (MGP_CAROLIEiJ_G0023674) #541



DISTANT LINK BETWEEN Hoxd3 (MGP_CAROLIEiJ_G0023673) #545 AND Hoxd1 (MGP_CAROLIEiJ_G0023676) #542

> Mus_B [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Mus_C [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> spretus [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM Hoxd11 (MGP_SPRETEiJ_G0024592) #12 TO Hoxd8 (MGP_SPRETEiJ_G0024595) #15
DISTANT LINK BETWEEN Hoxd8 (MGP_SPRETEiJ_G0024595) #547 AND Hoxd4 (MGP_SPRETEiJ_G0024597) #545



DISTANT LINK BETWEEN Hoxd3 (MGP_SPRETEiJ_G0024596) #549 AND Hoxd1 (MGP_SPRETEiJ_G0024599) #546

> Steppe mouse [MODERNSPECIES]
>> CHROMOSOME 3326
SYNTENIC BLOCK FROM Hoxd11 (ENSMSIG00000006326) #12 TO Hoxd1 (ENSMSIG00000006137) #18 [REVERSED]
> Mouse [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM Hoxd11 (ENSMUSG00000042499) #12 TO Hoxd8 (ENSMUSG00000027102) #15
DISTANT LINK BETWEEN Hoxd8 (ENSMUSG00000027102) #544 AND Hoxd4 (ENSMUSG00000101174) #542


DISTANT LINK BETWEEN Hoxd3 (ENSMUSG00000079277) #545 AND Hoxd1 (ENSMUSG00000042448) #543

> Cricetidae [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Cricetidae_B [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Northern American deer mouse [MODERNSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSPEMG00000018816 #12 TO ENSPEMG00000028623 #15
DISTANT LINK BETWEEN ENSPEMG00000028623 #474 AND Hoxd4 (ENSPEMG00000024627) #472
SYNTENIC BLOCK FROM Hoxd4 (ENSPEMG00000024627) #16 TO Hoxd1 (ENSPEMG00000021389) #18
> Prairie vole [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM Hoxd11 (ENSMOCG00000019226) #12 TO Hoxd8 (ENSMOCG00000022746) #15
DISTANT LINK BETWEEN Hoxd8 (ENSMOCG00000022746) #826 AND Hoxd4 (ENSMOCG00000013646) #824


DISTANT LINK BETWEEN Hoxd3 (ENSMOCG00000022552) #827 AND Hoxd1 (ENSMOCG00000014086) #825

> Cricetinae [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Chinese hamster chok1gshd [MODERNSPECIES]
>> CHROMOSOME 188
SYNTENIC BLOCK FROM Hoxd11 (ENSCGRG00001010386) #12 TO Hoxd1 (ENSCGRG00001011572) #18 [REVERSED]
> Golden Hamster [MODERNSPECIES]
>> CHROMOSOME 618
SYNTENIC BLOCK FROM ENSMAUG00000020249 #12 TO Hoxd1 (ENSMAUG00000018401) #18 [REVERSED]
> Lesser Egyptian jerboa [MODERNSPECIES]
>> CHROMOSOME 75
SYNTENIC BLOCK FROM Hoxd11 (ENSJJAG00000012344) #12 TO Hoxd10 (ENSJJAG00000011932) #13 [REVERSED]
ADJACENCY BETWEEN Hoxd10 (ENSJJAG00000011932) #13 AND Hoxd1 (ENSJJAG00000019059) #18
 [REVERSED]
> Kangaroo rat [MODERNSPECIES]
>> CHROMOSOME 324
SYNTENIC BLOCK FROM ENSDORG00000029219 #12 TO Hoxd10 (ENSDORG00000009436) #13
ADJACENCY BETWEEN Hoxd10 (ENSDORG00000009436) #13 AND ENSDORG00000027655 #15
SYNTENIC BLOCK FROM ENSDORG00000027655 #15 TO Hoxd1 (ENSDORG00000009445) #18
> Tree shrew [MODERNSPECIES]
>> CHROMOSOME 3966
SYNTENIC BLOCK FROM HOXD10 (ENSTBEG00000010925) #13 TO HOXD8 (ENSTBEG00000011462) #15
ADJACENCY BETWEEN HOXD8 (ENSTBEG00000011462) #15 AND ENSTBEG00000011786 #18

> Primates [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Haplorrhini [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Simiiformes [ANCESTRALSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Catarrhini [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
DISTANT LINK BETWEEN ENSGT00940000160027 #245 AND ENSGT00940000161892 #243

> Cercopithecidae [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #452 AND ENSGT00940000161892 #454
 [REVERSED]
> Cercopithecinae [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #440 AND ENSGT00940000161892 #442
 [REVERSED]
> Cercopithecinae_a [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
DISTANT LINK BETWEEN ENSGT00940000160027 #260 AND ENSGT00940000161892 #258

> Cercopithecinae_b [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
DISTANT LINK BETWEEN ENSGT00940000160027 #236 AND ENSGT00940000161892 #234

> Olive baboon [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM HOXD11 (ENSPANG00000049530) #12 TO HOXD1 (ENSPANG00000009593) #18
> Cercopithecinae_d [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #412 AND ENSGT00940000161892 #414
 [REVERSED]
> Drill [MODERNSPECIES]
>> CHROMOSOME 1072
SYNTENIC BLOCK FROM ENSMLEG00000030792 #12 TO HOXD1 (ENSMLEG00000035890) #18 [REVERSED]
> Sooty mangabey [MODERNSPECIES]
>> CHROMOSOME 570


DISTANT LINK BETWEEN HOXD10 (ENSCATG00000032256) #62 AND HOXD9 (ENSCATG00000037190) #60
SYNTENIC BLOCK FROM HOXD9 (ENSCATG00000037190) #14 TO HOXD3 (ENSCATG00000029355) #17
DISTANT LINK BETWEEN HOXD3 (ENSCATG00000029355) #67 AND HOXD1 (ENSCATG00000032397) #65

> Macaca [ANCESTRALSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #433 AND ENSGT00940000161892 #435
 [REVERSED]
> Pig-tailed macaque [MODERNSPECIES]
>> CHROMOSOME 585
SYNTENIC BLOCK FROM HOXD11 (ENSMNEG00000029127) #12 TO HOXD3 (ENSMNEG00000040202) #17 [REVERSED]
DISTANT LINK BETWEEN HOXD3 (ENSMNEG00000040202) #8 AND HOXD1 (ENSMNEG00000010514) #10
 [REVERSED]
> Macaca_a [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #422 AND ENSGT00940000161892 #424
 [REVERSED]
> Crab-eating macaque [MODERNSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSMFAG00000043724 #12 TO HOXD3 (ENSMFAG00000034065) #17
DISTANT LINK BETWEEN HOXD3 (ENSMFAG00000034065) #266 AND HOXD1 (ENSMFAG00000046035) #264

> Rhesus [MODERNSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM HOXD11 (ENSMMUG00000047915) #12 TO HOXD3 (ENSMMUG00000051761) #17
DISTANT LINK BETWEEN HOXD3 (ENSMMUG00000051761) #267 AND HOXD1 (ENSMMUG00000065344) #265

> Vervet Monkey [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM HOXD11 (ENSCSAG00000014457) #12 TO HOXD1 (ENSCSAG00000014419) #18
> Rhinopithecus [ANCESTRALSPECIES]
>> CHROMOSOME 148
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Black snub-nosed monkey [MODERNSPECIES]
>> CHROMOSOME 241
 [REVERSED]
DISTANT LINK BETWEEN ENSRBIG00000035253 #29 AND HOXD10 (ENSRBIG00000030470) #31
SYNTENIC BLOCK FROM HOXD10 (ENSRBIG00000030470) #13 TO HOXD1 (ENSRBIG00000031297) #18 [REVERSED]
> Golden snub-nosed monkey [MODERNSPECIES]
>> CHROMOSOME 722

DISTANT LINK BETWEEN ENSRROG00000043226 #7 AND HOXD10 (ENSRROG00000036162) #5


DISTANT LINK BETWEEN HOXD9 (ENSRROG00000032216) #8 AND ENSRROG00000024611 #6
SYNTENIC BLOCK FROM ENSRROG00000024611 #15 TO HOXD1 (ENSRROG00000035364) #18
> Hominoidea [ANCESTRALSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #442 AND ENSGT00940000161892 #444
 [REVERSED]
> Hominidae [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #435 AND ENSGT00940000161892 #437
 [REVERSED]
> Orangutan [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM HOXD11 (ENSPPYG00000031598) #12 TO HOXD1 (ENSPPYG00000012964) #18
> Homo/Pan/Gorilla group [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
DISTANT LINK BETWEEN ENSGT00940000160027 #232 AND ENSGT00940000161892 #230

> Gorilla [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM HOXD10 (ENSGGOG00000001341) #13 TO HOXD3 (ENSGGOG00000037089) #17
DISTANT LINK BETWEEN HOXD3 (ENSGGOG00000037089) #289 AND HOXD1 (ENSGGOG00000001348) #287

> Homo/Pan group [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
DISTANT LINK BETWEEN ENSGT00940000160027 #232 AND ENSGT00940000161892 #230

> Pan [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
DISTANT LINK BETWEEN ENSGT00940000160027 #242 AND ENSGT00940000161892 #240

> Chimpanzee [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM HOXD11 (ENSPTRG00000012666) #12 TO HOXD3 (ENSPTRG00000012672) #17
DISTANT LINK BETWEEN HOXD3 (ENSPTRG00000012672) #276 AND HOXD1 (ENSPTRG00000052716) #274

> Bonobo [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSPPAG00000028125 #12 TO HOXD3 (ENSPPAG00000031713) #17
DISTANT LINK BETWEEN HOXD3 (ENSPPAG00000031713) #242 AND ENSPPAG00000031665 #240

> Human [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM HOXD11 (ENSG00000128713) #12 TO HOXD8 (ENSG00000175879) #15
DISTANT LINK BETWEEN HOXD8 (ENSG00000175879) #880 AND HOXD4 (ENSG00000170166) #878


DISTANT LINK BETWEEN HOXD3 (ENSG00000128652) #881 AND HOXD1 (ENSG00000128645) #879

> Gibbon [MODERNSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM HOXD10 (ENSNLEG00000006010) #13 TO HOXD3 (ENSNLEG00000006018) #17
DISTANT LINK BETWEEN HOXD3 (ENSNLEG00000006018) #599 AND HOXD1 (ENSNLEG00000006019) #597

> Platyrrhini [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Cebidae [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Marmoset [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM HOXD11 (ENSCJAG00000048503) #12 TO HOXD1 (ENSCJAG00000008290) #18 [REVERSED]
> Cebidae_a [ANCESTRALSPECIES]
>> CHROMOSOME 27
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Bolivian squirrel monkey [MODERNSPECIES]
>> CHROMOSOME 46
SYNTENIC BLOCK FROM HOXD10 (ENSSBOG00000020553) #13 TO HOXD1 (ENSSBOG00000030906) #18 [REVERSED]
> Capuchin [MODERNSPECIES]
>> CHROMOSOME 822
SYNTENIC BLOCK FROM ENSCCAG00000020975 #16 TO HOXD1 (ENSCCAG00000001039) #18
>> CHROMOSOME 110
SYNTENIC BLOCK FROM HOXD11 (ENSCCAG00000034968) #12 TO ENSCCAG00000035403 #16
> Mas night monkey [MODERNSPECIES]
>> CHROMOSOME 1333
SYNTENIC BLOCK FROM HOXD11 (ENSANAG00000029678) #12 TO HOXD1 (ENSANAG00000019775) #18 [REVERSED]
> Tarsier [MODERNSPECIES]
>> CHROMOSOME 1221
SYNTENIC BLOCK FROM ENSTSYG00000035865 #12 TO HOXD10 (ENSTSYG00000002769) #13
>> CHROMOSOME 1909
SYNTENIC BLOCK FROM ENSTSYG00000001418 #15 TO HOXD3 (ENSTSYG00000036098) #17
> Strepsirrhini [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Bushbaby [MODERNSPECIES]
>> CHROMOSOME 163
SYNTENIC BLOCK FROM HOXD11 (ENSOGAG00000029520) #12 TO HOXD1 (ENSOGAG00000015712) #18 [REVERSED]
> Lemuriformes [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Mouse lemur [MODERNSPECIES]
>> CHROMOSOME 30
SYNTENIC BLOCK FROM HOXD11 (ENSMICG00000048033) #12 TO HOXD1 (ENSMICG00000044650) #18 [REVERSED]
> Lemuriformes_a [ANCESTRALSPECIES]
>> CHROMOSOME 69
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Coquerels sifaka [MODERNSPECIES]
>> CHROMOSOME 478
SYNTENIC BLOCK FROM HOXD11 (ENSPCOG00000015055) #12 TO HOXD1 (ENSPCOG00000024445) #18
> Greater bamboo lemur [MODERNSPECIES]
>> CHROMOSOME 243
SYNTENIC BLOCK FROM HOXD11 (ENSPSMG00000024479) #12 TO HOXD3 (ENSPSMG00000024507) #17
DISTANT LINK BETWEEN HOXD3 (ENSPSMG00000024507) #67 AND HOXD1 (ENSPSMG00000024516) #65

> Laurasiatheria [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Eulipotyphla [ANCESTRALSPECIES]
>> CHROMOSOME 669
SYNTENIC BLOCK FROM ENSGT00940000158266 #13 TO ENSGT00940000161503 #14 [REVERSED]
> Common shrew [MODERNSPECIES]
> Hedgehog [MODERNSPECIES]
>> CHROMOSOME 2657
SYNTENIC BLOCK FROM HOXD10 (ENSEEUG00000003440) #13 TO HOXD9 (ENSEEUG00000003473) #14
> Laurasiatheria_a [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Artiodactyla [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Suina [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Pig [MODERNSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM HOXD11 (ENSSSCG00000034741) #12 TO HOXD1 (ENSSSCG00000015986) #18
> Chacoan peccary [MODERNSPECIES]
>> CHROMOSOME 88
SYNTENIC BLOCK FROM HOXD11 (ENSCWAG00000000728) #12 TO HOXD1 (ENSCWAG00000000831) #18
> Artiodactyla_a [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Camelidae [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
> Arabian camel [MODERNSPECIES]
>> CHROMOSOME 31
SYNTENIC BLOCK FROM HOXD11 (ENSCDRG00005002440) #12 TO HOXD3 (ENSCDRG00005002512) #17
> Alpaca [MODERNSPECIES]
>> CHROMOSOME 285
SYNTENIC BLOCK FROM HOXD10 (ENSVPAG00000010197) #13 TO HOXD9 (ENSVPAG00000010198) #14
> Artiodactyla_b [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Cetacea [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Odontoceti [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Odontoceti_a [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Dolphin [MODERNSPECIES]
>> CHROMOSOME 804
SYNTENIC BLOCK FROM HOXD9 (ENSTTRG00000013773) #14 TO HOXD3 (ENSTTRG00000013779) #17
> Odontoceti_b [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Vaquita [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM HOXD11 (ENSPSNG00000005666) #12 TO HOXD1 (ENSPSNG00000005524) #18 [REVERSED]
> Monodontidae [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Narwhal [MODERNSPECIES]
>> CHROMOSOME 302
SYNTENIC BLOCK FROM ENSMMNG00015007589 #12 TO HOXD1 (ENSMMNG00015007440) #18 [REVERSED]
> Beluga whale [MODERNSPECIES]
>> CHROMOSOME 84
SYNTENIC BLOCK FROM ENSDLEG00000009052 #12 TO HOXD1 (ENSDLEG00000009181) #18
> Sperm whale [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSPCTG00005007381 #12 TO HOXD1 (ENSPCTG00005007516) #18
> Blue whale [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM HOXD11 (ENSBMSG00010005993) #12 TO HOXD1 (ENSBMSG00010006055) #18
> Pecora [ANCESTRALSPECIES]
>> CHROMOSOME 24
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Yarkand deer [MODERNSPECIES]
>> CHROMOSOME 26
SYNTENIC BLOCK FROM HOXD10 (ENSCHYG00000015831) #13 TO HOXD1 (ENSCHYG00000015562) #18 [REVERSED]
> Percora_a [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Siberian musk deer [MODERNSPECIES]
>> CHROMOSOME 342
SYNTENIC BLOCK FROM HOXD11 (ENSMMSG00000007513) #12 TO HOXD1 (ENSMMSG00000007322) #18 [REVERSED]
> Bovidae [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Bovinae [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> American bison [MODERNSPECIES]
>> CHROMOSOME 3320
SYNTENIC BLOCK FROM HOXD10 (ENSBBBG00000006962) #13 TO HOXD1 (ENSBBBG00000017690) #18 [REVERSED]
> Bos [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Bos_b [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Hybrid Bos Indicus [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM HOXD11 (ENSBIXG00005001515) #12 TO HOXD8 (ENSBIXG00005030431) #15 [REVERSED]
ADJACENCY BETWEEN HOXD8 (ENSBIXG00005030431) #15 AND HOXD3 (ENSBIXG00005030419) #17
SYNTENIC BLOCK FROM HOXD3 (ENSBIXG00005030419) #17 TO HOXD1 (ENSBIXG00005030413) #18 [REVERSED]
> Cow [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM HOXD11 (ENSBTAG00000033330) #12 TO HOXD1 (ENSBTAG00000015840) #18 [REVERSED]
> Bos_a [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Wild yak [MODERNSPECIES]
>> CHROMOSOME 2654
 [REVERSED]
ADJACENCY BETWEEN HOXD10 (ENSBMUG00000015601) #13 AND ENSBMUG00000015587 #15
 [REVERSED]
ADJACENCY BETWEEN ENSBMUG00000015587 #15 AND HOXD3 (ENSBMUG00000015572) #17
 [REVERSED]
> Domestic yak [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM HOXD11 (ENSBGRG00000016923) #12 TO HOXD1 (ENSBGRG00000017303) #18
> Caprinae [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Goat [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM HOXD11 (ENSCHIG00000026087) #12 TO HOXD1 (ENSCHIG00000017515) #18
> Rambouillet Sheep [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM hoxd11 (ENSOARG00020000346) #12 TO HOXD1 (ENSOARG00020000237) #18 [REVERSED]
> Laurasiatheria_b [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Carnivora [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Caniformia [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Caniformia_b [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Mustelinae [ANCESTRALSPECIES]
>> CHROMOSOME 21
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Ferret [MODERNSPECIES]
>> CHROMOSOME 359
SYNTENIC BLOCK FROM HOXD11 (ENSMPUG00000014029) #12 TO ENSMPUG00000014060 #15
DISTANT LINK BETWEEN ENSMPUG00000014060 #22 AND HOXD4 (ENSMPUG00000014070) #20
SYNTENIC BLOCK FROM HOXD4 (ENSMPUG00000014070) #16 TO HOXD3 (ENSMPUG00000014072) #17
DISTANT LINK BETWEEN HOXD3 (ENSMPUG00000014072) #25 AND HOXD1 (ENSMPUG00000014084) #23

> American mink [MODERNSPECIES]
>> CHROMOSOME 222
SYNTENIC BLOCK FROM ENSNVIG00000007170 #12 TO HOXD1 (ENSNVIG00000007113) #18 [REVERSED]
> Ursidae [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Giant Panda [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSAMEG00000025193 #12 TO HOXD1 (ENSAMEG00000028345) #18
> Ursus [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Polar bear [MODERNSPECIES]
>> CHROMOSOME 142
SYNTENIC BLOCK FROM ENSUMAG00000015649 #12 TO HOXD10 (ENSUMAG00000015650) #13
ADJACENCY BETWEEN HOXD10 (ENSUMAG00000015650) #13 AND ENSUMAG00000015653 #15
SYNTENIC BLOCK FROM ENSUMAG00000015653 #15 TO HOXD4 (ENSUMAG00000015658) #16
> American black bear [MODERNSPECIES]
>> CHROMOSOME 3042
SYNTENIC BLOCK FROM HOXD11 (ENSUAMG00000025686) #12 TO HOXD1 (ENSUAMG00000025700) #18
> Canidae [ANCESTRALSPECIES]
>> CHROMOSOME 45
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Red fox [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSVVUG00000012726 #12 TO HOXD8 (ENSVVUG00000012714) #15 [REVERSED]
ADJACENCY BETWEEN HOXD8 (ENSVVUG00000012714) #15 AND HOXD3 (ENSVVUG00000012700) #17
 [REVERSED]
> Canis_lupus [ANCESTRALSPECIES]
>> CHROMOSOME 39
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Dog [MODERNSPECIES]
>> CHROMOSOME 29

DISTANT LINK BETWEEN ENSCAFG00845018802 #119 AND HOXD10 (ENSCAFG00845019028) #117


DISTANT LINK BETWEEN HOXD9 (ENSCAFG00845018856) #120 AND HOXD4 (ENSCAFG00845019072) #118
SYNTENIC BLOCK FROM HOXD4 (ENSCAFG00845019072) #16 TO HOXD1 (ENSCAFG00845019313) #18
> Dingo [MODERNSPECIES]
>> CHROMOSOME 339
SYNTENIC BLOCK FROM HOXD11 (ENSCAFG00020006229) #12 TO HOXD10 (ENSCAFG00020006239) #13

DISTANT LINK BETWEEN HOXD9 (ENSCAFG00020006227) #77 AND HOXD8 (ENSCAFG00020006244) #74
SYNTENIC BLOCK FROM HOXD8 (ENSCAFG00020006244) #15 TO HOXD1 (ENSCAFG00020006270) #18
> Felidae [ANCESTRALSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Panthera [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Tiger [MODERNSPECIES]
>> CHROMOSOME 43
SYNTENIC BLOCK FROM HOXD10 (ENSPTIG00000015771) #13 TO HOXD4 (ENSPTIG00000015199) #16 [REVERSED]
> Panthera_a [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> leopard [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM HOXD11 (ENSPPRG00000000168) #12 TO HOXD1 (ENSPPRG00000023009) #18
> lion [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM HOXD11 (ENSPLOG00000022202) #12 TO HOXD1 (ENSPLOG00000022171) #18 [REVERSED]
> Cat [MODERNSPECIES]
>> CHROMOSOME 239
SYNTENIC BLOCK FROM HOXD11 (ENSFCAG00000030594) #12 TO HOXD1 (ENSFCAG00000042171) #18
> Laurasiatheria_c [ANCESTRALSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Chiroptera [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Microchiroptera [ANCESTRALSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Microbat [MODERNSPECIES]
>> CHROMOSOME 942
SYNTENIC BLOCK FROM HOXD11 (ENSMLUG00000007030) #12 TO HOXD10 (ENSMLUG00000007048) #13 [REVERSED]
ADJACENCY BETWEEN HOXD10 (ENSMLUG00000007048) #13 AND HOXD8 (ENSMLUG00000028864) #15
SYNTENIC BLOCK FROM HOXD8 (ENSMLUG00000028864) #15 TO ENSMLUG00000029447 #18 [REVERSED]
> Greater horseshoe bat [MODERNSPECIES]
>> CHROMOSOME 26
SYNTENIC BLOCK FROM HOXD11 (ENSRFEG00010022171) #12 TO HOXD1 (ENSRFEG00010022164) #18 [REVERSED]
> Megabat [MODERNSPECIES]
>> CHROMOSOME 1085
SYNTENIC BLOCK FROM HOXD11 (ENSPVAG00000017417) #12 TO HOXD10 (ENSPVAG00000017418) #13
ADJACENCY BETWEEN HOXD10 (ENSPVAG00000017418) #13 AND HOXD8 (ENSPVAG00000017420) #15

ADJACENCY BETWEEN HOXD8 (ENSPVAG00000017420) #15 AND HOXD3 (ENSPVAG00000017421) #17
SYNTENIC BLOCK FROM HOXD3 (ENSPVAG00000017421) #17 TO HOXD1 (ENSPVAG00000017425) #18
> Equus [ANCESTRALSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Horse [MODERNSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM HOXD11 (ENSECAG00000003045) #12 TO HOXD1 (ENSECAG00000035437) #18
> Donkey [MODERNSPECIES]
>> CHROMOSOME 24
SYNTENIC BLOCK FROM HOXD11 (ENSEASG00005030904) #12 TO HOXD1 (ENSEASG00005030887) #18 [REVERSED]
> Atlantogenata [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Afrotheria [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Afrotheria_a [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000158266 #13 TO ENSGT00940000161892 #18 [REVERSED]
> Elephant [MODERNSPECIES]
>> CHROMOSOME 301
SYNTENIC BLOCK FROM HOXD10 (ENSLAFG00000013262) #13 TO HOXD3 (ENSLAFG00000005477) #17 [REVERSED]
> Hyrax [MODERNSPECIES]
>> CHROMOSOME 9547

ADJACENCY BETWEEN HOXD10 (ENSPCAG00000015648) #13 AND ENSPCAG00000015753 #15
SYNTENIC BLOCK FROM ENSPCAG00000015753 #15 TO HOXD1 (ENSPCAG00000015869) #18
> Tenrec [MODERNSPECIES]
>> CHROMOSOME 2551
SYNTENIC BLOCK FROM ENSETEG00000011066 #12 TO HOXD9 (ENSETEG00000011069) #14
DISTANT LINK BETWEEN HOXD9 (ENSETEG00000011069) #5 AND HOXD8 (ENSETEG00000011076) #3

>> CHROMOSOME 16341
SYNTENIC BLOCK FROM HOXD4 (ENSETEG00000019404) #16 TO HOXD3 (ENSETEG00000019407) #17
> Xenarthra [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000158266 #13
ADJACENCY BETWEEN ENSGT00940000158266 #13 AND ENSGT00940000161653 #15
SYNTENIC BLOCK FROM ENSGT00940000161653 #15 TO ENSGT00940000161892 #18
> Armadillo [MODERNSPECIES]
>> CHROMOSOME 3580
SYNTENIC BLOCK FROM HOXD11 (ENSDNOG00000044260) #12 TO HOXD10 (ENSDNOG00000034389) #13
ADJACENCY BETWEEN HOXD10 (ENSDNOG00000034389) #13 AND HOXD8 (ENSDNOG00000036145) #15
SYNTENIC BLOCK FROM HOXD8 (ENSDNOG00000036145) #15 TO HOXD1 (ENSDNOG00000019807) #18
> Sloth [MODERNSPECIES]
> Marsupialia [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Marsupialia_b [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Diprotodontia [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Wallaby [MODERNSPECIES]
>> CHROMOSOME 7864
SYNTENIC BLOCK FROM ENSMEUG00000016575 #16 TO HOXD3 (ENSMEUG00000016587) #17
>> CHROMOSOME 3465
SYNTENIC BLOCK FROM HOXD11 (ENSMEUG00000001401) #12 TO HOXD10 (ENSMEUG00000001416) #13
> Diprotodontia_a [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Common wonbat [MODERNSPECIES]
>> CHROMOSOME 1018
SYNTENIC BLOCK FROM ENSVURG00010019168 #12 TO HOXD1 (ENSVURG00010019147) #18 [REVERSED]
> koala [MODERNSPECIES]
>> CHROMOSOME 40
SYNTENIC BLOCK FROM ENSPCIG00000034132 #12 TO HOXD8 (ENSPCIG00000029145) #15
DISTANT LINK BETWEEN HOXD8 (ENSPCIG00000029145) #79 AND HOXD4 (ENSPCIG00000026503) #77


DISTANT LINK BETWEEN HOXD3 (ENSPCIG00000026502) #80 AND HOXD1 (ENSPCIG00000026501) #78

> Tasmanian devil [MODERNSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM HOXD11 (ENSSHAG00000021515) #12 TO HOXD8 (ENSSHAG00000026470) #15 [REVERSED]
DISTANT LINK BETWEEN HOXD8 (ENSSHAG00000026470) #1541 AND HOXD4 (ENSSHAG00000024760) #1543
 [REVERSED]
 [REVERSED]
DISTANT LINK BETWEEN HOXD3 (ENSSHAG00000024332) #1540 AND HOXD1 (ENSSHAG00000016187) #1542
 [REVERSED]
> Opossum [MODERNSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM HOXD11 (ENSMODG00000009565) #12 TO HOXD1 (ENSMODG00000009604) #18
> Platypus [MODERNSPECIES]
>> CHROMOSOME 20
SYNTENIC BLOCK FROM HOXD11 (ENSOANG00000048827) #12 TO HOXD1 (ENSOANG00000043961) #18
> Sauria [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Archelosauria [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Cryptodira [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Chinese turtle [MODERNSPECIES]
>> CHROMOSOME 780
SYNTENIC BLOCK FROM HOXD11 (ENSPSIG00000003098) #12 TO HOXD10 (ENSPSIG00000003088) #13 [REVERSED]
ADJACENCY BETWEEN HOXD10 (ENSPSIG00000003088) #13 AND HOXD4 (ENSPSIG00000003079) #16
SYNTENIC BLOCK FROM HOXD4 (ENSPSIG00000003079) #16 TO HOXD1 (ENSPSIG00000003058) #18 [REVERSED]
> Testudinoidea [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Emydidae [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> painted turtle [MODERNSPECIES]
>> CHROMOSOME 2363
SYNTENIC BLOCK FROM HOXD11 (ENSCPBG00000003578) #12 TO HOXD10 (ENSCPBG00000003567) #13 [REVERSED]
DISTANT LINK BETWEEN HOXD10 (ENSCPBG00000003567) #50 AND HOXD8 (ENSCPBG00000003524) #52
SYNTENIC BLOCK FROM HOXD8 (ENSCPBG00000003524) #15 TO HOXD1 (ENSCPBG00000003489) #18 [REVERSED]
> Three-toed box turtle [MODERNSPECIES]
>> CHROMOSOME 25
SYNTENIC BLOCK FROM HOXD11 (ENSTMTG00000016420) #12 TO HOXD1 (ENSTMTG00000016527) #18
> Testudinidae [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000158266 #13
ADJACENCY BETWEEN ENSGT00940000158266 #13 AND ENSGT00940000161653 #15
SYNTENIC BLOCK FROM ENSGT00940000161653 #15 TO ENSGT00940000161892 #18
> Goode s thornscrub tortoise [MODERNSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM HOXD11 (ENSGEVG00005009700) #12 TO HOXD10 (ENSGEVG00005009665) #13 [REVERSED]
DISTANT LINK BETWEEN HOXD10 (ENSGEVG00005009665) #301 AND HOXD8 (ENSGEVG00005009500) #303
SYNTENIC BLOCK FROM HOXD8 (ENSGEVG00005009500) #15 TO HOXD1 (ENSGEVG00005009340) #18 [REVERSED]
> Abingdon island giant tortoise [MODERNSPECIES]
>> CHROMOSOME 1035
SYNTENIC BLOCK FROM HOXD11 (ENSCABG00000005462) #12 TO HOXD10 (ENSCABG00000005460) #13 [REVERSED]
DISTANT LINK BETWEEN HOXD10 (ENSCABG00000005460) #4 AND HOXD8 (ENSCABG00000005456) #6
SYNTENIC BLOCK FROM HOXD8 (ENSCABG00000005456) #15 TO HOXD1 (ENSCABG00000005451) #18 [REVERSED]
> Archosauria [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Australian saltwater crocodile [MODERNSPECIES]
>> CHROMOSOME 66
SYNTENIC BLOCK FROM HOXD11 (ENSCPRG00005013836) #12 TO HOXD1 (ENSCPRG00005013818) #18 [REVERSED]
> Aves [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> African ostrich [MODERNSPECIES]
>> CHROMOSOME 838
SYNTENIC BLOCK FROM HOXD11 (ENSSCUG00000017498) #12 TO HOXD10 (ENSSCUG00000017499) #13
DISTANT LINK BETWEEN HOXD10 (ENSSCUG00000017499) #33 AND HOXD9 (ENSSCUG00000017501) #31
SYNTENIC BLOCK FROM HOXD9 (ENSSCUG00000017501) #14 TO HOXD4 (ENSSCUG00000017503) #16
> Neognathae [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Galloanserae [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Phasianidae [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Phasianidae_b [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17 [REVERSED]
> Chicken [MODERNSPECIES]
>> CHROMOSOME 36
SYNTENIC BLOCK FROM HOXD11 (ENSGALG00010024780) #12 TO HOXD3 (ENSGALG00010024724) #17 [REVERSED]
> Turkey [MODERNSPECIES]
>> CHROMOSOME 27
 [REVERSED]
DISTANT LINK BETWEEN ENSMGAG00000009660 #219 AND ENSMGAG00000018655 #389
 [REVERSED]
 [REVERSED]
 [REVERSED]
DISTANT LINK BETWEEN ENSMGAG00000017418 #220 AND HOXD4 (ENSMGAG00000015896) #391
 [REVERSED]
> Japanese quail [MODERNSPECIES]
>> CHROMOSOME 25
SYNTENIC BLOCK FROM HOXD11 (ENSCJPG00005017732) #12 TO HOXD1 (ENSCJPG00005017724) #18 [REVERSED]
> Anatidae [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161653.c.a #15 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000161653.c.a #224 AND ENSGT00940000157270 #226
 [REVERSED]
 [REVERSED]
DISTANT LINK BETWEEN ENSGT00940000160027 #223 AND ENSGT00940000161892 #225
 [REVERSED]
> Duck [MODERNSPECIES]
>> CHROMOSOME 25
SYNTENIC BLOCK FROM HOXD11 (ENSAPLG00000020921) #12 TO HOXD8 (ENSAPLG00000008959) #15
DISTANT LINK BETWEEN HOXD8 (ENSAPLG00000008959) #338 AND HOXD4 (ENSAPLG00000008983) #336


> Pink-footed goose [MODERNSPECIES]
>> CHROMOSOME 20
SYNTENIC BLOCK FROM HOXD11 (ENSABRG00000002426) #12 TO HOXD8 (ENSABRG00000002447) #15
DISTANT LINK BETWEEN HOXD8 (ENSABRG00000002447) #119 AND HOXD4 (ENSABRG00000002472) #117


DISTANT LINK BETWEEN HOXD3 (ENSABRG00000002455) #120 AND HOXD1 (ENSABRG00000002496) #118

> Neognathae_b [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
> Neognathae_c [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
> Golden eagle [MODERNSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM HOXD11 (ENSACCG00020003844) #12 TO HOXD3 (ENSACCG00020003777) #17 [REVERSED]
> Kakapo [MODERNSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM HOXD11 (ENSSHBG00005003263) #12 TO HOXD3 (ENSSHBG00005003209) #17 [REVERSED]
> Passeriformes [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
> Great tit [MODERNSPECIES]
>> CHROMOSOME 27
SYNTENIC BLOCK FROM HOXD11 (ENSPMJG00000018529) #12 TO HOXD3 (ENSPMJG00000018522) #17 [REVERSED]
> Passeriformes_d [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
> Flycatcher [MODERNSPECIES]
>> CHROMOSOME 26
SYNTENIC BLOCK FROM HOXD11 (ENSFALG00000014318) #12 TO HOXD3 (ENSFALG00000003190) #17 [REVERSED]
> Passeriformes_g [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
> Medium ground finch [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM HOXD11 (ENSGFOG00000006526) #12 TO HOXD10 (ENSGFOG00000006531) #13
DISTANT LINK BETWEEN HOXD10 (ENSGFOG00000006531) #260 AND ENSGFOG00000006539 #258
SYNTENIC BLOCK FROM ENSGFOG00000006539 #14 TO ENSGFOG00000006552 #17
> Passeroidea [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000160027 #17
> Common canary [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM HOXD11 (ENSSCAG00000016103) #12 TO HOXD10 (ENSSCAG00000016104) #13
DISTANT LINK BETWEEN HOXD10 (ENSSCAG00000016104) #291 AND HOXD8 (ENSSCAG00000016107) #289
SYNTENIC BLOCK FROM HOXD8 (ENSSCAG00000016107) #15 TO HOXD3 (ENSSCAG00000016112) #17
> Zebra finch [MODERNSPECIES]
>> CHROMOSOME 29
SYNTENIC BLOCK FROM HOXD11 (ENSTGUG00000008941) #12 TO HOXD3 (ENSTGUG00000025792) #17
> Lepidosauria [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Episquamata [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Toxicofera [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Elapidae [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Indian cobra [MODERNSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM HOXD11 (ENSNNAG00000000101) #12 TO HOXD1 (ENSNNAG00000000092) #18 [REVERSED]
> Elapidae_a [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Blue-lipped sea krait [MODERNSPECIES]
>> CHROMOSOME 3112
SYNTENIC BLOCK FROM HOXD9 (ENSLLTG00000006509) #14 TO HOXD4 (ENSLLTG00000010444) #16 [REVERSED]
ADJACENCY BETWEEN HOXD4 (ENSLLTG00000010444) #16 AND HOXD1 (ENSLLTG00000010428) #18
 [REVERSED]
> Acanthophiinae [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18 [REVERSED]
> Mainland tiger snake [MODERNSPECIES]
>> CHROMOSOME 93
SYNTENIC BLOCK FROM HOXD11 (ENSNSUG00000011224) #12 TO HOXD1 (ENSNSUG00000011213) #18 [REVERSED]
> Eastern brown snake [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM HOXD10 (ENSPTXG00000003623) #13 TO HOXD1 (ENSPTXG00000003611) #18 [REVERSED]
> Lizard [MODERNSPECIES]
>> CHROMOSOME 970
SYNTENIC BLOCK FROM HOXD11 (ENSACAG00000007282) #12 TO HOXD10 (ENSACAG00000017910) #13 [REVERSED]
ADJACENCY BETWEEN HOXD10 (ENSACAG00000017910) #13 AND HOXD8 (ENSACAG00000044230) #15
SYNTENIC BLOCK FROM HOXD8 (ENSACAG00000044230) #15 TO HOXD1 (ENSACAG00000006543) #18 [REVERSED]
> Laterata [ANCESTRALSPECIES]
>> CHROMOSOME 30
SYNTENIC BLOCK FROM ENSGT00940000161308 #12 TO ENSGT00940000161892 #18
> Common wall lizard [MODERNSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM HOXD11 (ENSPMRG00000004246) #12 TO HOXD10 (ENSPMRG00000004241) #13 [REVERSED]
ADJACENCY BETWEEN HOXD10 (ENSPMRG00000004241) #13 AND HOXD8 (ENSPMRG00000004233) #15
SYNTENIC BLOCK FROM HOXD8 (ENSPMRG00000004233) #15 TO HOXD1 (ENSPMRG00000004218) #18 [REVERSED]
> Argentine black and white tegu [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM HOXD11 (ENSSMRG00000018210) #12 TO HOXD8 (ENSSMRG00000018213) #15
DISTANT LINK BETWEEN HOXD8 (ENSSMRG00000018213) #25 AND HOXD4 (ENSSMRG00000018216) #23


DISTANT LINK BETWEEN HOXD3 (ENSSMRG00000018215) #26 AND HOXD1 (ENSSMRG00000018217) #24

> tuatara [MODERNSPECIES]
>> CHROMOSOME 1466
SYNTENIC BLOCK FROM HOXD11 (ENSSPUG00000005263) #12 TO HOXD10 (ENSSPUG00000005271) #13
ADJACENCY BETWEEN HOXD10 (ENSSPUG00000005271) #13 AND HOXD4 (ENSSPUG00000005347) #16