> Glires [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Rodentia [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Rodentia_A [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16










SYNTENIC BLOCK FROM ENSGT01090000260080.b.a #27 TO ENSGT00390000004692.d.b #28


> Hystricomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 39
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Hystricomorpha_a [ANCESTRALSPECIES]
>> CHROMOSOME 30
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT01050000244950.a.a.b #17
DISTANT LINK BETWEEN ENSGT01050000244950.a.a.b #4 AND ENSGT00940000158416 #2
SYNTENIC BLOCK FROM ENSGT00940000158416 #18 TO ENSGT01050000244879.b.a.b.b #19
DISTANT LINK BETWEEN ENSGT01050000244879.b.a.b.b #7 AND ENSGT00940000160831 #5
SYNTENIC BLOCK FROM ENSGT00940000160831 #20 TO ENSGT00940000156535 #22
DISTANT LINK BETWEEN ENSGT00940000156535 #11 AND ENSGT00390000003223 #9
SYNTENIC BLOCK FROM ENSGT00390000003223 #23 TO ENSGT00940000158188 #30
> Hystricomorpha_b [ANCESTRALSPECIES]
>> CHROMOSOME 29
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT01050000244879.b.a.b.b #19 [REVERSED]
DISTANT LINK BETWEEN ENSGT01050000244879.b.a.b.b #197 AND ENSGT00940000160831 #199
SYNTENIC BLOCK FROM ENSGT00940000160831 #20 TO ENSGT00940000158188 #30 [REVERSED]
> Long-tailed chinchilla [REFERENCESPECIES]
>> CHROMOSOME 143
SYNTENIC BLOCK FROM ZUP1 (ENSCLAG00000007886) #15 TO MAN1A1 (ENSCLAG00000007613) #30
> Degu [MODERNSPECIES]
>> CHROMOSOME 75
SYNTENIC BLOCK FROM ZUP1 (ENSODEG00000004926) #15 TO RSPH4A (ENSODEG00000005270) #16
DISTANT LINK BETWEEN RSPH4A (ENSODEG00000005270) #3 AND RFX6 (ENSODEG00000006706) #1

DISTANT LINK BETWEEN RFX6 (ENSODEG00000006706) #5 AND ROS1 (ENSODEG00000006047) #3

DISTANT LINK BETWEEN ROS1 (ENSODEG00000006047) #7 AND GOPC (ENSODEG00000005332) #5
SYNTENIC BLOCK FROM GOPC (ENSODEG00000005332) #22 TO NUS1 (ENSODEG00000005194) #23
DISTANT LINK BETWEEN NUS1 (ENSODEG00000005194) #10 AND SLC35F1 (ENSODEG00000005040) #8
SYNTENIC BLOCK FROM SLC35F1 (ENSODEG00000005040) #24 TO MAN1A1 (ENSODEG00000004631) #30
> Guinea pig [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ZUP1 (ENSCPOG00000000534) #15 TO KPNA5 (ENSCPOG00000035973) #17
DISTANT LINK BETWEEN KPNA5 (ENSCPOG00000035973) #472 AND RFX6 (ENSCPOG00000015023) #470

DISTANT LINK BETWEEN RFX6 (ENSCPOG00000015023) #474 AND ENSCPOG00000012998 #472
SYNTENIC BLOCK FROM ENSCPOG00000012998 #20 TO GOPC (ENSCPOG00000010125) #22
DISTANT LINK BETWEEN GOPC (ENSCPOG00000010125) #479 AND NUS1 (ENSCPOG00000039822) #476
SYNTENIC BLOCK FROM NUS1 (ENSCPOG00000039822) #23 TO SLC35F1 (ENSCPOG00000029995) #24
DISTANT LINK BETWEEN SLC35F1 (ENSCPOG00000029995) #506 AND CEP85L (ENSCPOG00000005126) #480
SYNTENIC BLOCK FROM CEP85L (ENSCPOG00000005126) #25 TO PLN (ENSCPOG00000037471) #26
SYNTENIC BLOCK FROM MCM9 (ENSCPOG00000005443) #27 TO ASF1A (ENSCPOG00000033289) #28


> Naked mole-rat female [MODERNSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSHGLG00000040407 #22 TO ENSHGLG00000003172 #24
DISTANT LINK BETWEEN ENSHGLG00000003172 #1105 AND CEP85L (ENSHGLG00000003335) #1103
SYNTENIC BLOCK FROM CEP85L (ENSHGLG00000003335) #25 TO MAN1A1 (ENSHGLG00000002233) #30
>> CHROMOSOME 30
SYNTENIC BLOCK FROM ENSHGLG00000009896 #15 TO ENSHGLG00000002525 #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Sciuridae [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16










SYNTENIC BLOCK FROM ENSGT01090000260080.b.a #27 TO ENSGT00390000004692.d.b #28


> Eurasian red squirrel [MODERNSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ZUP1 (ENSSVLG00005009321) #15 TO RSPH4A (ENSSVLG00005009389) #16








DISTANT LINK BETWEEN CEP85L (ENSSVLG00005007817) #265 AND PLN (ENSSVLG00005008023) #263

SYNTENIC BLOCK FROM MCM9 (ENSSVLG00005007606) #27 TO ASF1A (ENSSVLG00005007714) #28


> Marmotini [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Alpin marmot [MODERNSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ZUP1 (ENSMMMG00000015434) #15 TO RSPH4A (ENSMMMG00000015424) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Marmotini_b [ANCESTRALSPECIES]
>> CHROMOSOME 178
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Squirrel [MODERNSPECIES]
>> CHROMOSOME 604
SYNTENIC BLOCK FROM ZUP1 (ENSSTOG00000012338) #15 TO RSPH4A (ENSSTOG00000033876) #16
>> CHROMOSOME 258
SYNTENIC BLOCK FROM GPRC6A (ENSSTOG00000012356) #18 TO RFX6 (ENSSTOG00000012365) #19
DISTANT LINK BETWEEN RFX6 (ENSSTOG00000012365) #4 AND ROS1 (ENSSTOG00000006606) #2
SYNTENIC BLOCK FROM ROS1 (ENSSTOG00000006606) #20 TO GOPC (ENSSTOG00000006712) #22
DISTANT LINK BETWEEN GOPC (ENSSTOG00000006712) #8 AND NUS1 (ENSSTOG00000024807) #6
SYNTENIC BLOCK FROM NUS1 (ENSSTOG00000024807) #23 TO PLN (ENSSTOG00000033902) #26
ADJACENCY BETWEEN PLN (ENSSTOG00000033902) #26 AND ASF1A (ENSSTOG00000027796) #28
SYNTENIC BLOCK FROM ASF1A (ENSSTOG00000027796) #28 TO MAN1A1 (ENSSTOG00000027299) #30
> Arctic ground squirrel [MODERNSPECIES]
>> CHROMOSOME 133
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Rodentia_B [ANCESTRALSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Myomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 21
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Muroidea [ANCESTRALSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Upper Galilee mountains blind mole rat [MODERNSPECIES]
>> CHROMOSOME 1622
SYNTENIC BLOCK FROM Zup1 (ENSNGAG00000020874) #15 TO Rsph4a (ENSNGAG00000022773) #16
>> CHROMOSOME 940
SYNTENIC BLOCK FROM Gprc6a (ENSNGAG00000002794) #18 TO Rfx6 (ENSNGAG00000011878) #19 [REVERSED]
DISTANT LINK BETWEEN Rfx6 (ENSNGAG00000011878) #14 AND Ros1 (ENSNGAG00000016624) #16
SYNTENIC BLOCK FROM Ros1 (ENSNGAG00000016624) #20 TO Gopc (ENSNGAG00000019735) #22 [REVERSED]
DISTANT LINK BETWEEN Gopc (ENSNGAG00000019735) #10 AND Nus1 (ENSNGAG00000021776) #12
SYNTENIC BLOCK FROM Nus1 (ENSNGAG00000021776) #23 TO Slc35f1 (ENSNGAG00000018835) #24 [REVERSED]
DISTANT LINK BETWEEN Slc35f1 (ENSNGAG00000018835) #7 AND Cep85l (ENSNGAG00000021057) #9
 [REVERSED]
 [REVERSED]
DISTANT LINK BETWEEN Pln (ENSNGAG00000021366) #6 AND Asf1a (ENSNGAG00000020470) #8
 [REVERSED]
DISTANT LINK BETWEEN Asf1a (ENSNGAG00000020470) #4 AND ENSNGAG00000019744 #6
SYNTENIC BLOCK FROM ENSNGAG00000019744 #29 TO Man1a (ENSNGAG00000011524) #30 [REVERSED]
> Muroidea_A [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Murinae [ANCESTRALSPECIES]
>> CHROMOSOME 41
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16














> Rat [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM Zup1 (ENSRNOG00000000398) #15 TO Rsph4a (ENSRNOG00000049696) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Mus [ANCESTRALSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16













> Shrew mouse [MODERNSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM Zup1 (MGP_PahariEiJ_G0030642) #15 TO Rsph4a (MGP_PahariEiJ_G0030641) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Mus_A [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16













> Ryukyu mouse [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM Zup1 (MGP_CAROLIEiJ_G0015225) #15 TO Rsph4a (MGP_CAROLIEiJ_G0015224) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Mus_B [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16









SYNTENIC BLOCK FROM ENSGT01090000260080.b.a #27 TO ENSGT00390000004692.d.b #28


> Mus_C [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
SYNTENIC BLOCK FROM ENSGT01090000260080.b.a #27 TO ENSGT00390000004692.d.b #28 [REVERSED]
 [REVERSED]
 [REVERSED]
> spretus [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM Zup1 (MGP_SPRETEiJ_G0016034) #15 TO Rsph4a (MGP_SPRETEiJ_G0016033) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Steppe mouse [MODERNSPECIES]
>> CHROMOSOME 3060
SYNTENIC BLOCK FROM Ros1 (ENSMSIG00000022755) #20 TO Dcbld1 (ENSMSIG00000022713) #21 [REVERSED]
DISTANT LINK BETWEEN Dcbld1 (ENSMSIG00000022713) #12 AND Gopc (ENSMSIG00000022667) #14
 [REVERSED]
DISTANT LINK BETWEEN Gopc (ENSMSIG00000022667) #10 AND Nus1 (ENSMSIG00000022636) #12
 [REVERSED]
DISTANT LINK BETWEEN Nus1 (ENSMSIG00000022636) #8 AND Slc35f1 (ENSMSIG00000022585) #10
 [REVERSED]
DISTANT LINK BETWEEN Slc35f1 (ENSMSIG00000022585) #5 AND Cep85l (ENSMSIG00000022480) #8
 [REVERSED]
 [REVERSED]
DISTANT LINK BETWEEN Pln (ENSMSIG00000022553) #2 AND Mcm9 (ENSMSIG00000022434) #6
 [REVERSED]
 [REVERSED]
DISTANT LINK BETWEEN Asf1a (ENSMSIG00000022467) #0 AND ENSMSIG00000022408 #3
 [REVERSED]
 [REVERSED]
>> CHROMOSOME 2221
SYNTENIC BLOCK FROM Gprc6a (ENSMSIG00000002274) #18 TO Rfx6 (ENSMSIG00000001975) #19 [REVERSED]
>> CHROMOSOME 1833
SYNTENIC BLOCK FROM Zup1 (ENSMSIG00000001266) #15 TO Rsph4a (ENSMSIG00000001351) #16
> Mouse [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM Zup1 (ENSMUSG00000039531) #15 TO Rsph4a (ENSMUSG00000039552) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Cricetidae [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Cricetidae_B [ANCESTRALSPECIES]
>> CHROMOSOME 21
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Northern American deer mouse [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM Zup1 (ENSPEMG00000019963) #15 TO Rsph4a (ENSPEMG00000015392) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Prairie vole [MODERNSPECIES]
>> CHROMOSOME 358
SYNTENIC BLOCK FROM Zup1 (ENSMOCG00000007844) #15 TO Rsph4a (ENSMOCG00000015792) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Cricetinae [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Chinese hamster chok1gshd [MODERNSPECIES]
>> CHROMOSOME 160
SYNTENIC BLOCK FROM Zup1 (ENSCGRG00001019649) #15 TO Rsph4a (ENSCGRG00001022255) #16








SYNTENIC BLOCK FROM Cep85l (ENSCGRG00001013524) #25 TO Pln (ENSCGRG00001002992) #26
SYNTENIC BLOCK FROM Mcm9 (ENSCGRG00001011225) #27 TO Asf1a (ENSCGRG00001012443) #28


> Golden Hamster [MODERNSPECIES]
>> CHROMOSOME 655
SYNTENIC BLOCK FROM Zup1 (ENSMAUG00000012807) #15 TO Rsph4a (ENSMAUG00000009247) #16 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Lesser Egyptian jerboa [MODERNSPECIES]
>> CHROMOSOME 44







SYNTENIC BLOCK FROM Cep85l (ENSJJAG00000016233) #25 TO Pln (ENSJJAG00000003066) #26



> Kangaroo rat [MODERNSPECIES]
>> CHROMOSOME 476
SYNTENIC BLOCK FROM Zup1 (ENSDORG00000003947) #15 TO Rsph4a (ENSDORG00000003944) #16








SYNTENIC BLOCK FROM Cep85l (ENSDORG00000008984) #25 TO Pln (ENSDORG00000028705) #26



> Lagomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 108
SYNTENIC BLOCK FROM ENSGT00390000008232 #15 TO ENSGT00500000044869.a.a #16 [REVERSED]
ADJACENCY BETWEEN ENSGT00500000044869.a.a #16 AND ENSGT01050000244950.a.a.b #17
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
> Pika [MODERNSPECIES]
>> CHROMOSOME 834
SYNTENIC BLOCK FROM ROS1 (ENSOPRG00000015334) #20 TO ENSOPRG00000015459 #23
>> CHROMOSOME 248
SYNTENIC BLOCK FROM CEP85L (ENSOPRG00000004916) #25 TO MAN1A1 (ENSOPRG00000005018) #30
>> CHROMOSOME 244
SYNTENIC BLOCK FROM ENSOPRG00000007061 #15 TO ENSOPRG00000007052 #16 [REVERSED]
> Rabbit [MODERNSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ZUP1 (ENSOCUG00000007805) #15 TO RSPH4A (ENSOCUG00000009852) #16 [REVERSED]
ADJACENCY BETWEEN RSPH4A (ENSOCUG00000009852) #16 AND KPNA5 (ENSOCUG00000007812) #17
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]
 [REVERSED]