> Theria [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Eutheria [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Boreoeutheria [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Euarchontoglires [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Euarchontoglires_A [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Glires [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Lagomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 93
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Pika [REFERENCESPECIES]
>> CHROMOSOME 3955
SYNTENIC BLOCK FROM JADE1 (ENSOPRG00000003945) #15 TO ENSOPRG00000003964 #16
> Rabbit [MODERNSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM JADE1 (ENSOCUG00000004521) #15 TO SCLT1 (ENSOCUG00000015077) #16
> Rodentia [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Rodentia_A [ANCESTRALSPECIES]
>> CHROMOSOME 24
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Hystricomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 38
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Hystricomorpha_a [ANCESTRALSPECIES]
>> CHROMOSOME 34
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Guinea pig [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM JADE1 (ENSCPOG00000002256) #15 TO SCLT1 (ENSCPOG00000002258) #16
> Hystricomorpha_b [ANCESTRALSPECIES]
>> CHROMOSOME 75
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Degu [MODERNSPECIES]
>> CHROMOSOME 109
SYNTENIC BLOCK FROM JADE1 (ENSODEG00000002559) #15 TO SCLT1 (ENSODEG00000002596) #16
> Long-tailed chinchilla [MODERNSPECIES]
>> CHROMOSOME 135
SYNTENIC BLOCK FROM JADE1 (ENSCLAG00000003659) #15 TO SCLT1 (ENSCLAG00000003786) #16 [REVERSED]
> Naked mole-rat female [MODERNSPECIES]
>> CHROMOSOME 22
 [REVERSED]
DISTANT LINK BETWEEN JADE1 (ENSHGLG00000002967) #149 AND SCLT1 (ENSHGLG00000003674) #151
 [REVERSED]
> Sciuridae [ANCESTRALSPECIES]
>> CHROMOSOME 38
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Eurasian red squirrel [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM JADE1 (ENSSVLG00005006252) #15 TO SCLT1 (ENSSVLG00005006330) #16
> Marmotini [ANCESTRALSPECIES]
>> CHROMOSOME 45
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Alpin marmot [MODERNSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM JADE1 (ENSMMMG00000014553) #15 TO SCLT1 (ENSMMMG00000014616) #16
> Marmotini_b [ANCESTRALSPECIES]
>> CHROMOSOME 148
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Squirrel [MODERNSPECIES]
>> CHROMOSOME 242
SYNTENIC BLOCK FROM JADE1 (ENSSTOG00000027272) #15 TO SCLT1 (ENSSTOG00000011673) #16 [REVERSED]
> Arctic ground squirrel [MODERNSPECIES]
>> CHROMOSOME 82
SYNTENIC BLOCK FROM JADE1 (ENSUPAG00010021308) #15 TO SCLT1 (ENSUPAG00010021293) #16 [REVERSED]
> Rodentia_B [ANCESTRALSPECIES]
>> CHROMOSOME 30
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Myomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 41
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Muroidea [ANCESTRALSPECIES]
>> CHROMOSOME 56
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Upper Galilee mountains blind mole rat [MODERNSPECIES]
>> CHROMOSOME 403
SYNTENIC BLOCK FROM Jade1 (ENSNGAG00000021297) #15 TO Sclt1 (ENSNGAG00000011737) #16 [REVERSED]
> Muroidea_A [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Murinae [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Rat [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM Jade1 (ENSRNOG00000014066) #15 TO Sclt1 (ENSRNOG00000014139) #16
> Mus [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Shrew mouse [MODERNSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM Jade1 (MGP_PahariEiJ_G0026405) #15 TO Sclt1 (MGP_PahariEiJ_G0026406) #16
> Mus_A [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Ryukyu mouse [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM Jade1 (MGP_CAROLIEiJ_G0024964) #15 TO Sclt1 (MGP_CAROLIEiJ_G0024965) #16
> Mus_B [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Mus_C [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> spretus [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM Jade1 (MGP_SPRETEiJ_G0025899) #15 TO Sclt1 (MGP_SPRETEiJ_G0025900) #16
> Steppe mouse [MODERNSPECIES]
>> CHROMOSOME 3113
SYNTENIC BLOCK FROM Jade1 (ENSMSIG00000009613) #15 TO Sclt1 (ENSMSIG00000009655) #16
> Mouse [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM Jade1 (ENSMUSG00000025764) #15 TO Sclt1 (ENSMUSG00000059834) #16
> Cricetidae [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Cricetidae_B [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Northern American deer mouse [MODERNSPECIES]
>> CHROMOSOME 19
SYNTENIC BLOCK FROM Jade1 (ENSPEMG00000010395) #15 TO Sclt1 (ENSPEMG00000012760) #16
> Prairie vole [MODERNSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM Jade1 (ENSMOCG00000020538) #15 TO Sclt1 (ENSMOCG00000008170) #16
> Cricetinae [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Chinese hamster chok1gshd [MODERNSPECIES]
>> CHROMOSOME 352
SYNTENIC BLOCK FROM Jade1 (ENSCGRG00001001195) #15 TO Sclt1 (ENSCGRG00001013488) #16 [REVERSED]
> Golden Hamster [MODERNSPECIES]
>> CHROMOSOME 636
SYNTENIC BLOCK FROM Jade1 (ENSMAUG00000005560) #15 TO Sclt1 (ENSMAUG00000008418) #16 [REVERSED]
> Lesser Egyptian jerboa [MODERNSPECIES]
>> CHROMOSOME 57
SYNTENIC BLOCK FROM Jade1 (ENSJJAG00000022312) #15 TO Sclt1 (ENSJJAG00000023270) #16
> Kangaroo rat [MODERNSPECIES]
>> CHROMOSOME 515
SYNTENIC BLOCK FROM Jade1 (ENSDORG00000012191) #15 TO Sclt1 (ENSDORG00000010048) #16
> Tree shrew [MODERNSPECIES]
>> CHROMOSOME 4590
SYNTENIC BLOCK FROM JADE1 (ENSTBEG00000013429) #15 TO SCLT1 (ENSTBEG00000013838) #16
> Primates [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Haplorrhini [ANCESTRALSPECIES]
>> CHROMOSOME 20
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Simiiformes [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Catarrhini [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Cercopithecidae [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Cercopithecinae [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Cercopithecinae_a [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Cercopithecinae_b [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Olive baboon [MODERNSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM JADE1 (ENSPANG00000015983) #15 TO SCLT1 (ENSPANG00000025624) #16 [REVERSED]
> Cercopithecinae_d [ANCESTRALSPECIES]
>> CHROMOSOME 167
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Drill [MODERNSPECIES]
>> CHROMOSOME 1207
SYNTENIC BLOCK FROM JADE1 (ENSMLEG00000031067) #15 TO SCLT1 (ENSMLEG00000021841) #16
> Sooty mangabey [MODERNSPECIES]
>> CHROMOSOME 119
SYNTENIC BLOCK FROM JADE1 (ENSCATG00000021885) #15 TO SCLT1 (ENSCATG00000037846) #16 [REVERSED]
> Macaca [ANCESTRALSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Pig-tailed macaque [MODERNSPECIES]
>> CHROMOSOME 126
SYNTENIC BLOCK FROM JADE1 (ENSMNEG00000038173) #15 TO SCLT1 (ENSMNEG00000040387) #16 [REVERSED]
> Macaca_a [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Crab-eating macaque [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM JADE1 (ENSMFAG00000038238) #15 TO SCLT1 (ENSMFAG00000037478) #16
> Rhesus [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM JADE1 (ENSMMUG00000002145) #15 TO SCLT1 (ENSMMUG00000002146) #16
> Vervet Monkey [MODERNSPECIES]
>> CHROMOSOME 26
SYNTENIC BLOCK FROM JADE1 (ENSCSAG00000003562) #15 TO SCLT1 (ENSCSAG00000003559) #16
> Rhinopithecus [ANCESTRALSPECIES]
>> CHROMOSOME 645
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Black snub-nosed monkey [MODERNSPECIES]
>> CHROMOSOME 1447
SYNTENIC BLOCK FROM JADE1 (ENSRBIG00000025070) #15 TO SCLT1 (ENSRBIG00000041213) #16
> Golden snub-nosed monkey [MODERNSPECIES]
>> CHROMOSOME 2093
SYNTENIC BLOCK FROM JADE1 (ENSRROG00000029648) #15 TO SCLT1 (ENSRROG00000044415) #16
> Hominoidea [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Hominidae [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Orangutan [MODERNSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM JADE1 (ENSPPYG00000015061) #15 TO SCLT1 (ENSPPYG00000015062) #16
> Homo/Pan/Gorilla group [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Gorilla [MODERNSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM JADE1 (ENSGGOG00000002344) #15 TO SCLT1 (ENSGGOG00000028181) #16
> Homo/Pan group [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Pan [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Chimpanzee [MODERNSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM JADE1 (ENSPTRG00000016439) #15 TO SCLT1 (ENSPTRG00000016440) #16
> Bonobo [MODERNSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM JADE1 (ENSPPAG00000027693) #15 TO SCLT1 (ENSPPAG00000039830) #16
> Human [MODERNSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM JADE1 (ENSG00000077684) #15 TO SCLT1 (ENSG00000151466) #16
> Gibbon [MODERNSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM JADE1 (ENSNLEG00000013898) #15 TO SCLT1 (ENSNLEG00000013945) #16 [REVERSED]
> Platyrrhini [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Cebidae [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Marmoset [MODERNSPECIES]
>> CHROMOSOME 15
 [REVERSED]
DISTANT LINK BETWEEN JADE1 (ENSCJAG00000003295) #262 AND SCLT1 (ENSCJAG00000003278) #264
 [REVERSED]
> Cebidae_a [ANCESTRALSPECIES]
>> CHROMOSOME 128
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Bolivian squirrel monkey [MODERNSPECIES]
>> CHROMOSOME 66
 [REVERSED]
DISTANT LINK BETWEEN JADE1 (ENSSBOG00000021360) #140 AND SCLT1 (ENSSBOG00000027326) #142
 [REVERSED]
> Capuchin [MODERNSPECIES]
>> CHROMOSOME 105
SYNTENIC BLOCK FROM JADE1 (ENSCCAG00000036549) #15 TO SCLT1 (ENSCCAG00000020908) #16 [REVERSED]
> Mas night monkey [MODERNSPECIES]
>> CHROMOSOME 1054

DISTANT LINK BETWEEN JADE1 (ENSANAG00000033708) #50 AND SCLT1 (ENSANAG00000028256) #48

> Tarsier [MODERNSPECIES]
> Strepsirrhini [ANCESTRALSPECIES]
>> CHROMOSOME 32
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Bushbaby [MODERNSPECIES]
>> CHROMOSOME 208
SYNTENIC BLOCK FROM JADE1 (ENSOGAG00000005157) #15 TO SCLT1 (ENSOGAG00000010360) #16
> Lemuriformes [ANCESTRALSPECIES]
>> CHROMOSOME 38
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Mouse lemur [MODERNSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM JADE1 (ENSMICG00000044275) #15 TO SCLT1 (ENSMICG00000017457) #16 [REVERSED]
> Lemuriformes_a [ANCESTRALSPECIES]
>> CHROMOSOME 221
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Coquerels sifaka [MODERNSPECIES]
>> CHROMOSOME 283
SYNTENIC BLOCK FROM JADE1 (ENSPCOG00000014078) #15 TO SCLT1 (ENSPCOG00000021918) #16
> Greater bamboo lemur [MODERNSPECIES]
>> CHROMOSOME 1033
SYNTENIC BLOCK FROM JADE1 (ENSPSMG00000019440) #15 TO SCLT1 (ENSPSMG00000019530) #16
> Laurasiatheria [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Eulipotyphla [ANCESTRALSPECIES]
> Common shrew [MODERNSPECIES]
> Hedgehog [MODERNSPECIES]
> Laurasiatheria_a [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Artiodactyla [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Suina [ANCESTRALSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Pig [MODERNSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM JADE1 (ENSSSCG00000009071) #15 TO SCLT1 (ENSSSCG00000029943) #16 [REVERSED]
> Chacoan peccary [MODERNSPECIES]
>> CHROMOSOME 120
SYNTENIC BLOCK FROM JADE1 (ENSCWAG00000021004) #15 TO SCLT1 (ENSCWAG00000021033) #16
> Artiodactyla_a [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Camelidae [ANCESTRALSPECIES]
>> CHROMOSOME 20
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Arabian camel [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM JADE1 (ENSCDRG00005002006) #15 TO SCLT1 (ENSCDRG00005001764) #16 [REVERSED]
> Alpaca [MODERNSPECIES]
>> CHROMOSOME 1564
SYNTENIC BLOCK FROM JADE1 (ENSVPAG00000007226) #15 TO SCLT1 (ENSVPAG00000007227) #16
> Artiodactyla_b [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Cetacea [ANCESTRALSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Odontoceti [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Odontoceti_a [ANCESTRALSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Dolphin [MODERNSPECIES]
>> CHROMOSOME 2268
SYNTENIC BLOCK FROM JADE1 (ENSTTRG00000008170) #15 TO SCLT1 (ENSTTRG00000008178) #16
> Odontoceti_b [ANCESTRALSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Vaquita [MODERNSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM JADE1 (ENSPSNG00000003062) #15 TO SCLT1 (ENSPSNG00000002991) #16 [REVERSED]
> Monodontidae [ANCESTRALSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Narwhal [MODERNSPECIES]
>> CHROMOSOME 307
SYNTENIC BLOCK FROM JADE1 (ENSMMNG00015013404) #15 TO SCLT1 (ENSMMNG00015013441) #16
> Beluga whale [MODERNSPECIES]
>> CHROMOSOME 77
SYNTENIC BLOCK FROM JADE1 (ENSDLEG00000018723) #15 TO SCLT1 (ENSDLEG00000018763) #16
> Sperm whale [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM JADE1 (ENSPCTG00005012696) #15 TO SCLT1 (ENSPCTG00005012799) #16
> Blue whale [MODERNSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM JADE1 (ENSBMSG00010006510) #15 TO SCLT1 (ENSBMSG00010006535) #16
> Pecora [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Yarkand deer [MODERNSPECIES]
>> CHROMOSOME 28
SYNTENIC BLOCK FROM JADE1 (ENSCHYG00000003379) #15 TO SCLT1 (ENSCHYG00000003454) #16
> Percora_a [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Siberian musk deer [MODERNSPECIES]
>> CHROMOSOME 197
SYNTENIC BLOCK FROM JADE1 (ENSMMSG00000000816) #15 TO SCLT1 (ENSMMSG00000000985) #16
> Bovidae [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Bovinae [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> American bison [MODERNSPECIES]
>> CHROMOSOME 3324
SYNTENIC BLOCK FROM JADE1 (ENSBBBG00000010187) #15 TO SCLT1 (ENSBBBG00000010228) #16 [REVERSED]
> Bos [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Bos_b [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Hybrid Bos Indicus [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM JADE1 (ENSBIXG00005000704) #15 TO SCLT1 (ENSBIXG00005010351) #16
> Cow [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM JADE1 (ENSBTAG00000017493) #15 TO SCLT1 (ENSBTAG00000013611) #16 [REVERSED]
> Bos_a [ANCESTRALSPECIES]
>> CHROMOSOME 14
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Wild yak [MODERNSPECIES]
>> CHROMOSOME 153
SYNTENIC BLOCK FROM JADE1 (ENSBMUG00000018397) #15 TO SCLT1 (ENSBMUG00000018495) #16
> Domestic yak [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM JADE1 (ENSBGRG00000005261) #15 TO SCLT1 (ENSBGRG00000004845) #16 [REVERSED]
> Caprinae [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Goat [MODERNSPECIES]
>> CHROMOSOME 8

DISTANT LINK BETWEEN JADE1 (ENSCHIG00000015416) #402 AND SCLT1 (ENSCHIG00000026931) #399

> Rambouillet Sheep [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM JADE1 (ENSOARG00020017029) #15 TO SCLT1 (ENSOARG00020016794) #16 [REVERSED]
> Laurasiatheria_b [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Carnivora [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Caniformia [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Caniformia_b [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Mustelinae [ANCESTRALSPECIES]
>> CHROMOSOME 113
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Ferret [MODERNSPECIES]
>> CHROMOSOME 183
SYNTENIC BLOCK FROM JADE1 (ENSMPUG00000017361) #15 TO SCLT1 (ENSMPUG00000017358) #16 [REVERSED]
> American mink [MODERNSPECIES]
>> CHROMOSOME 223
SYNTENIC BLOCK FROM JADE1 (ENSNVIG00000007913) #15 TO SCLT1 (ENSNVIG00000008005) #16
> Ursidae [ANCESTRALSPECIES]
>> CHROMOSOME 17
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Giant Panda [MODERNSPECIES]
>> CHROMOSOME 15
SYNTENIC BLOCK FROM JADE1 (ENSAMEG00000010542) #15 TO SCLT1 (ENSAMEG00000010566) #16 [REVERSED]
> Ursus [ANCESTRALSPECIES]
>> CHROMOSOME 255
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Polar bear [MODERNSPECIES]
>> CHROMOSOME 222
SYNTENIC BLOCK FROM JADE1 (ENSUMAG00000007382) #15 TO SCLT1 (ENSUMAG00000007387) #16
> American black bear [MODERNSPECIES]
> Canidae [ANCESTRALSPECIES]
>> CHROMOSOME 61
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Red fox [MODERNSPECIES]
>> CHROMOSOME 102
SYNTENIC BLOCK FROM JADE1 (ENSVVUG00000011265) #15 TO SCLT1 (ENSVVUG00000011235) #16 [REVERSED]
> Canis_lupus [ANCESTRALSPECIES]
>> CHROMOSOME 48
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Dog [MODERNSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM JADE1 (ENSCAFG00845024981) #15 TO SCLT1 (ENSCAFG00845024006) #16 [REVERSED]
> Dingo [MODERNSPECIES]
>> CHROMOSOME 28
SYNTENIC BLOCK FROM JADE1 (ENSCAFG00020019003) #15 TO SCLT1 (ENSCAFG00020019047) #16
> Felidae [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Panthera [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Tiger [MODERNSPECIES]
>> CHROMOSOME 367
SYNTENIC BLOCK FROM JADE1 (ENSPTIG00000010404) #15 TO SCLT1 (ENSPTIG00000010184) #16 [REVERSED]
> Panthera_a [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> leopard [MODERNSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM JADE1 (ENSPPRG00000023039) #15 TO SCLT1 (ENSPPRG00000017276) #16
> lion [MODERNSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM JADE1 (ENSPLOG00000009060) #15 TO SCLT1 (ENSPLOG00000008836) #16 [REVERSED]
> Cat [MODERNSPECIES]
>> CHROMOSOME 235
SYNTENIC BLOCK FROM JADE1 (ENSFCAG00000027791) #15 TO SCLT1 (ENSFCAG00000003448) #16 [REVERSED]
> Laurasiatheria_c [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Chiroptera [ANCESTRALSPECIES]
>> CHROMOSOME 36
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Microchiroptera [ANCESTRALSPECIES]
>> CHROMOSOME 38
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Microbat [MODERNSPECIES]
>> CHROMOSOME 938
SYNTENIC BLOCK FROM JADE1 (ENSMLUG00000008320) #15 TO SCLT1 (ENSMLUG00000008359) #16
> Greater horseshoe bat [MODERNSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM JADE1 (ENSRFEG00010011050) #15 TO SCLT1 (ENSRFEG00010011176) #16
> Megabat [MODERNSPECIES]
>> CHROMOSOME 3153
SYNTENIC BLOCK FROM JADE1 (ENSPVAG00000007854) #15 TO SCLT1 (ENSPVAG00000007856) #16
> Equus [ANCESTRALSPECIES]
>> CHROMOSOME 24
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Horse [MODERNSPECIES]
>> CHROMOSOME 11
SYNTENIC BLOCK FROM JADE1 (ENSECAG00000024419) #15 TO SCLT1 (ENSECAG00000024050) #16 [REVERSED]
> Donkey [MODERNSPECIES]
>> CHROMOSOME 22
SYNTENIC BLOCK FROM JADE1 (ENSEASG00005018071) #15 TO SCLT1 (ENSEASG00005018058) #16 [REVERSED]
> Atlantogenata [ANCESTRALSPECIES]
>> CHROMOSOME 49
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Afrotheria [ANCESTRALSPECIES]
>> CHROMOSOME 43
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Afrotheria_a [ANCESTRALSPECIES]
>> CHROMOSOME 41
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Elephant [MODERNSPECIES]
>> CHROMOSOME 95
SYNTENIC BLOCK FROM JADE1 (ENSLAFG00000001017) #15 TO SCLT1 (ENSLAFG00000001020) #16
> Hyrax [MODERNSPECIES]
>> CHROMOSOME 7185
SYNTENIC BLOCK FROM JADE1 (ENSPCAG00000013780) #15 TO SCLT1 (ENSPCAG00000013876) #16
> Tenrec [MODERNSPECIES]
> Xenarthra [ANCESTRALSPECIES]
>> CHROMOSOME 402
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Armadillo [MODERNSPECIES]
>> CHROMOSOME 2303
SYNTENIC BLOCK FROM JADE1 (ENSDNOG00000000548) #15 TO SCLT1 (ENSDNOG00000000551) #16
> Sloth [MODERNSPECIES]
> Marsupialia [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16 [REVERSED]
> Marsupialia_b [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Diprotodontia [ANCESTRALSPECIES]
>> CHROMOSOME 98
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Wallaby [MODERNSPECIES]
> Diprotodontia_a [ANCESTRALSPECIES]
>> CHROMOSOME 91
SYNTENIC BLOCK FROM ENSGT00940000158247 #15 TO ENSGT00730000111168 #16
> Common wonbat [MODERNSPECIES]
>> CHROMOSOME 756
SYNTENIC BLOCK FROM JADE1 (ENSVURG00010024632) #15 TO SCLT1 (ENSVURG00010024618) #16 [REVERSED]
> koala [MODERNSPECIES]
>> CHROMOSOME 253
 [REVERSED]
DISTANT LINK BETWEEN JADE1 (ENSPCIG00000015194) #6 AND SCLT1 (ENSPCIG00000015201) #8
 [REVERSED]
> Tasmanian devil [MODERNSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSSHAG00000015268 #15 TO ENSSHAG00000014744 #16
> Opossum [MODERNSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM JADE1 (ENSMODG00000020759) #15 TO SCLT1 (ENSMODG00000020760) #16 [REVERSED]