> Euarchontoglires_A [ANCESTRALSPECIES] >> CHROMOSOME 13 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #300 AND ENSGT00940000159722 #298 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Tree shrew [REFERENCESPECIES] >> CHROMOSOME 5400 SYNTENIC BLOCK FROM HYCC2 (ENSTBEG00000001135) #14 TO BZW1 (ENSTBEG00000000430) #19 [REVERSED] > Glires [ANCESTRALSPECIES] >> CHROMOSOME 14 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #323 AND ENSGT00940000159722 #325 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Lagomorpha [ANCESTRALSPECIES] >> CHROMOSOME 13 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #191 AND ENSGT00940000159722 #189 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Pika [MODERNSPECIES] >> CHROMOSOME 4633 SYNTENIC BLOCK FROM HYCC2 (ENSOPRG00000005742) #14 TO BZW1 (ENSOPRG00000005652) #19 [REVERSED] > Rabbit [MODERNSPECIES] >> CHROMOSOME 18 SYNTENIC BLOCK FROM HYCC2 (ENSOCUG00000010690) #14 TO ORC2 (ENSOCUG00000010675) #15 [REVERSED] DISTANT LINK BETWEEN ORC2 (ENSOCUG00000010675) #661 AND NIF3L1 (ENSOCUG00000010667) #663 [REVERSED] DISTANT LINK BETWEEN NIF3L1 (ENSOCUG00000010667) #659 AND CLK1 (ENSOCUG00000010653) #661 SYNTENIC BLOCK FROM CLK1 (ENSOCUG00000010653) #18 TO ENSOCUG00000010647 #19 [REVERSED] > Rodentia [ANCESTRALSPECIES] >> CHROMOSOME 14 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #301 AND ENSGT00940000159722 #299 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Rodentia_A [ANCESTRALSPECIES] >> CHROMOSOME 13 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #299 AND ENSGT00940000159722 #297 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Hystricomorpha [ANCESTRALSPECIES] >> CHROMOSOME 20 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #303 AND ENSGT00940000159722 #305 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Hystricomorpha_a [ANCESTRALSPECIES] >> CHROMOSOME 17 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #296 AND ENSGT00940000159722 #298 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Guinea pig [MODERNSPECIES] >> CHROMOSOME 104 SYNTENIC BLOCK FROM HYCC2 (ENSCPOG00000010108) #14 TO NIF3L1 (ENSCPOG00000008572) #16 DISTANT LINK BETWEEN NIF3L1 (ENSCPOG00000008572) #14 AND CLK1 (ENSCPOG00000027067) #12 SYNTENIC BLOCK FROM CLK1 (ENSCPOG00000027067) #18 TO ENSCPOG00000010449 #19 > Hystricomorpha_b [ANCESTRALSPECIES] >> CHROMOSOME 24 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #196 AND ENSGT00940000159722 #198 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Degu [MODERNSPECIES] >> CHROMOSOME 66 DISTANT LINK BETWEEN HYCC2 (ENSODEG00000008316) #13 AND ORC2 (ENSODEG00000008853) #11 SYNTENIC BLOCK FROM ORC2 (ENSODEG00000008853) #15 TO NIF3L1 (ENSODEG00000008894) #16 DISTANT LINK BETWEEN NIF3L1 (ENSODEG00000008894) #16 AND CLK1 (ENSODEG00000009021) #14 DISTANT LINK BETWEEN CLK1 (ENSODEG00000009021) #18 AND ENSODEG00000008411 #16 > Long-tailed chinchilla [MODERNSPECIES] >> CHROMOSOME 110 SYNTENIC BLOCK FROM HYCC2 (ENSCLAG00000011177) #14 TO NIF3L1 (ENSCLAG00000013524) #16 DISTANT LINK BETWEEN NIF3L1 (ENSCLAG00000013524) #13 AND CLK1 (ENSCLAG00000011455) #11 SYNTENIC BLOCK FROM CLK1 (ENSCLAG00000011455) #18 TO BZW1 (ENSCLAG00000012079) #19 > Naked mole-rat female [MODERNSPECIES] >> CHROMOSOME 22 SYNTENIC BLOCK FROM ENSHGLG00000009432 #14 TO ENSHGLG00000010323 #15 DISTANT LINK BETWEEN ENSHGLG00000010323 #233 AND NIF3L1 (ENSHGLG00000010669) #231 DISTANT LINK BETWEEN NIF3L1 (ENSHGLG00000010669) #235 AND Clk1 (ENSHGLG00000011322) #233 SYNTENIC BLOCK FROM Clk1 (ENSHGLG00000011322) #18 TO BZW1 (ENSHGLG00000011961) #19 > Sciuridae [ANCESTRALSPECIES] >> CHROMOSOME 10 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #292 AND ENSGT00940000159722 #290 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Eurasian red squirrel [MODERNSPECIES] >> CHROMOSOME 12 [REVERSED] DISTANT LINK BETWEEN HYCC2 (ENSSVLG00005004160) #1566 AND ORC2 (ENSSVLG00005004127) #1568 [REVERSED] DISTANT LINK BETWEEN ORC2 (ENSSVLG00005004127) #1564 AND NIF3L1 (ENSSVLG00005004091) #1566 [REVERSED] DISTANT LINK BETWEEN NIF3L1 (ENSSVLG00005004091) #1562 AND CLK1 (ENSSVLG00005004020) #1564 SYNTENIC BLOCK FROM CLK1 (ENSSVLG00005004020) #18 TO BZW1 (ENSSVLG00005003945) #19 [REVERSED] > Marmotini [ANCESTRALSPECIES] >> CHROMOSOME 2 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #291 AND ENSGT00940000159722 #289 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b.v #19 > Alpin marmot [MODERNSPECIES] >> CHROMOSOME 8 SYNTENIC BLOCK FROM HYCC2 (ENSMMMG00000012182) #14 TO NIF3L1 (ENSMMMG00000012077) #16 [REVERSED] DISTANT LINK BETWEEN NIF3L1 (ENSMMMG00000012077) #104 AND CLK1 (ENSMMMG00000012051) #106 SYNTENIC BLOCK FROM CLK1 (ENSMMMG00000012051) #18 TO ENSMMMG00000012026 #19 [REVERSED] > Marmotini_b [ANCESTRALSPECIES] >> CHROMOSOME 103 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #53 AND ENSGT00940000159722 #51 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b.v #19 > Squirrel [MODERNSPECIES] >> CHROMOSOME 326 SYNTENIC BLOCK FROM HYCC2 (ENSSTOG00000023641) #14 TO NIF3L1 (ENSSTOG00000030641) #16 [REVERSED] DISTANT LINK BETWEEN NIF3L1 (ENSSTOG00000030641) #2 AND CLK1 (ENSSTOG00000009578) #4 SYNTENIC BLOCK FROM CLK1 (ENSSTOG00000009578) #18 TO ENSSTOG00000030689 #19 [REVERSED] > Arctic ground squirrel [MODERNSPECIES] >> CHROMOSOME 317 SYNTENIC BLOCK FROM HYCC2 (ENSUPAG00010014985) #14 TO NIF3L1 (ENSUPAG00010015151) #16 DISTANT LINK BETWEEN NIF3L1 (ENSUPAG00010015151) #28 AND CLK1 (ENSUPAG00010015196) #26 SYNTENIC BLOCK FROM CLK1 (ENSUPAG00010015196) #18 TO ENSUPAG00010015320 #19 > Rodentia_B [ANCESTRALSPECIES] >> CHROMOSOME 12 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #297 AND ENSGT00940000159722 #295 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Myomorpha [ANCESTRALSPECIES] >> CHROMOSOME 10 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #291 AND ENSGT00940000159722 #289 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Muroidea [ANCESTRALSPECIES] >> CHROMOSOME 20 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #291 AND ENSGT00940000159722 #289 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Upper Galilee mountains blind mole rat [MODERNSPECIES] >> CHROMOSOME 417 SYNTENIC BLOCK FROM ENSNGAG00000023509 #15 TO ENSNGAG00000022183 #16 DISTANT LINK BETWEEN ENSNGAG00000022183 #3 AND ENSNGAG00000010384 #1 SYNTENIC BLOCK FROM ENSNGAG00000010384 #18 TO Bzw1 (ENSNGAG00000014200) #19 > Muroidea_A [ANCESTRALSPECIES] >> CHROMOSOME 19 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #64 AND ENSGT00940000159722 #66 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Murinae [ANCESTRALSPECIES] >> CHROMOSOME 9 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #347 AND ENSGT00940000159722 #345 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Rat [MODERNSPECIES] >> CHROMOSOME 19 SYNTENIC BLOCK FROM Hycc2 (ENSRNOG00000025079) #14 TO Bzw1 (ENSRNOG00000013977) #19 [REVERSED] > Mus [ANCESTRALSPECIES] >> CHROMOSOME 5 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #183 AND ENSGT00940000159722 #185 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Shrew mouse [MODERNSPECIES] >> CHROMOSOME 18 SYNTENIC BLOCK FROM Hycc2 (MGP_PahariEiJ_G0027405) #14 TO Nif3l1 (MGP_PahariEiJ_G0027403) #16 [REVERSED] DISTANT LINK BETWEEN Nif3l1 (MGP_PahariEiJ_G0027403) #171 AND Clk1 (MGP_PahariEiJ_G0027401) #173 SYNTENIC BLOCK FROM Clk1 (MGP_PahariEiJ_G0027401) #18 TO Bzw1 (MGP_PahariEiJ_G0027400) #19 [REVERSED] > Mus_A [ANCESTRALSPECIES] >> CHROMOSOME 5 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #237 AND ENSGT00940000159722 #239 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Ryukyu mouse [MODERNSPECIES] >> CHROMOSOME 0 SYNTENIC BLOCK FROM Hycc2 (MGP_CAROLIEiJ_G0014167) #14 TO Nif3l1 (MGP_CAROLIEiJ_G0014165) #16 [REVERSED] DISTANT LINK BETWEEN Nif3l1 (MGP_CAROLIEiJ_G0014165) #242 AND Clk1 (MGP_CAROLIEiJ_G0014163) #244 SYNTENIC BLOCK FROM Clk1 (MGP_CAROLIEiJ_G0014163) #18 TO Bzw1 (MGP_CAROLIEiJ_G0014162) #19 [REVERSED] > Mus_B [ANCESTRALSPECIES] >> CHROMOSOME 7 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #51 AND ENSGT00940000159722 #53 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b.p #19 [REVERSED] > Mus_C [ANCESTRALSPECIES] >> CHROMOSOME 1 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #917 AND ENSGT00940000159722 #915 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b.p #19 > spretus [MODERNSPECIES] >> CHROMOSOME 0 SYNTENIC BLOCK FROM Hycc2 (MGP_SPRETEiJ_G0014973) #14 TO Nif3l1 (MGP_SPRETEiJ_G0014971) #16 [REVERSED] DISTANT LINK BETWEEN Nif3l1 (MGP_SPRETEiJ_G0014971) #238 AND Clk1 (MGP_SPRETEiJ_G0014969) #240 SYNTENIC BLOCK FROM Clk1 (MGP_SPRETEiJ_G0014969) #18 TO Bzw1 (MGP_SPRETEiJ_G0014968) #19 [REVERSED] > Steppe mouse [MODERNSPECIES] >> CHROMOSOME 51 SYNTENIC BLOCK FROM Hycc2 (ENSMSIG00000023763) #14 TO Nif3l1 (ENSMSIG00000023627) #16 [REVERSED] DISTANT LINK BETWEEN Nif3l1 (ENSMSIG00000023627) #8 AND Clk1 (ENSMSIG00000023554) #10 SYNTENIC BLOCK FROM Clk1 (ENSMSIG00000023554) #18 TO ENSMSIG00000023501 #19 [REVERSED] > Mouse [MODERNSPECIES] >> CHROMOSOME 0 SYNTENIC BLOCK FROM Hycc2 (ENSMUSG00000038174) #14 TO Nif3l1 (ENSMUSG00000026036) #16 [REVERSED] DISTANT LINK BETWEEN Nif3l1 (ENSMUSG00000026036) #247 AND Clk1 (ENSMUSG00000026034) #249 SYNTENIC BLOCK FROM Clk1 (ENSMUSG00000026034) #18 TO Bzw1 (ENSMUSG00000051223) #19 [REVERSED] > Cricetidae [ANCESTRALSPECIES] >> CHROMOSOME 19 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #62 AND ENSGT00940000159722 #64 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Cricetidae_B [ANCESTRALSPECIES] >> CHROMOSOME 20 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 [REVERSED] DISTANT LINK BETWEEN ENSGT00390000003590 #63 AND ENSGT00940000159722 #65 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 [REVERSED] > Northern American deer mouse [MODERNSPECIES] >> CHROMOSOME 4 SYNTENIC BLOCK FROM Hycc2 (ENSPEMG00000014604) #14 TO Nif3l1 (ENSPEMG00000023040) #16 DISTANT LINK BETWEEN Nif3l1 (ENSPEMG00000023040) #375 AND Clk1 (ENSPEMG00000022508) #373 > Prairie vole [MODERNSPECIES] >> CHROMOSOME 91 SYNTENIC BLOCK FROM Hycc2 (ENSMOCG00000012367) #14 TO Nif3l1 (ENSMOCG00000012327) #16 DISTANT LINK BETWEEN Nif3l1 (ENSMOCG00000012327) #23 AND ENSMOCG00000005608 #21 SYNTENIC BLOCK FROM ENSMOCG00000005608 #18 TO Bzw1 (ENSMOCG00000008375) #19 > Cricetinae [ANCESTRALSPECIES] >> CHROMOSOME 3 SYNTENIC BLOCK FROM ENSGT00390000011295.a #14 TO ENSGT00390000003590 #16 DISTANT LINK BETWEEN ENSGT00390000003590 #339 AND ENSGT00940000159722 #337 SYNTENIC BLOCK FROM ENSGT00940000159722 #18 TO ENSGT00390000012561.b #19 > Chinese hamster chok1gshd [MODERNSPECIES] >> CHROMOSOME 1 SYNTENIC BLOCK FROM Hycc2 (ENSCGRG00001015587) #14 TO ENSCGRG00001018137 #16 [REVERSED] DISTANT LINK BETWEEN ENSCGRG00001018137 #1370 AND Clk1 (ENSCGRG00001018410) #1372 SYNTENIC BLOCK FROM Clk1 (ENSCGRG00001018410) #18 TO Bzw1 (ENSCGRG00001017178) #19 [REVERSED] > Golden Hamster [MODERNSPECIES] >> CHROMOSOME 640 SYNTENIC BLOCK FROM Hycc2 (ENSMAUG00000020858) #14 TO Nif3l1 (ENSMAUG00000019604) #16 DISTANT LINK BETWEEN Nif3l1 (ENSMAUG00000019604) #147 AND Clk1 (ENSMAUG00000007794) #145 SYNTENIC BLOCK FROM Clk1 (ENSMAUG00000007794) #18 TO Bzw1 (ENSMAUG00000004813) #19 > Lesser Egyptian jerboa [MODERNSPECIES] >> CHROMOSOME 52 DISTANT LINK BETWEEN Hycc2 (ENSJJAG00000022468) #76 AND Orc2 (ENSJJAG00000011615) #74 SYNTENIC BLOCK FROM Orc2 (ENSJJAG00000011615) #15 TO Bzw1 (ENSJJAG00000022065) #19 > Kangaroo rat [MODERNSPECIES] >> CHROMOSOME 320 SYNTENIC BLOCK FROM Hycc2 (ENSDORG00000029531) #14 TO Nif3l1 (ENSDORG00000007390) #16 [REVERSED] DISTANT LINK BETWEEN Nif3l1 (ENSDORG00000007390) #144 AND Clk1 (ENSDORG00000007388) #146 SYNTENIC BLOCK FROM Clk1 (ENSDORG00000007388) #18 TO Bzw1 (ENSDORG00000029865) #19 [REVERSED]