> Euarchontoglires [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Euarchontoglires_A [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Glires [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Lagomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Pika [REFERENCESPECIES]
>> CHROMOSOME 6335
SYNTENIC BLOCK FROM THRA (ENSOPRG00000012107) #15 TO NR1D1 (ENSOPRG00000012121) #16
> Rabbit [MODERNSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM THRA (ENSOCUG00000009728) #15 TO NR1D1 (ENSOCUG00000009732) #16
> Rodentia [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Rodentia_A [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Hystricomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Hystricomorpha_a [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Guinea pig [MODERNSPECIES]
>> CHROMOSOME 53
SYNTENIC BLOCK FROM THRA (ENSCPOG00000015132) #15 TO NR1D1 (ENSCPOG00000015135) #16
> Hystricomorpha_b [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Degu [MODERNSPECIES]
>> CHROMOSOME 97
SYNTENIC BLOCK FROM THRA (ENSODEG00000017611) #15 TO NR1D1 (ENSODEG00000017976) #16
> Long-tailed chinchilla [MODERNSPECIES]
>> CHROMOSOME 158
SYNTENIC BLOCK FROM THRA (ENSCLAG00000014028) #15 TO NR1D1 (ENSCLAG00000014130) #16
> Naked mole-rat female [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM THRA (ENSHGLG00000011614) #15 TO NR1D1 (ENSHGLG00000012254) #16
> Sciuridae [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Eurasian red squirrel [MODERNSPECIES]
>> CHROMOSOME 12
SYNTENIC BLOCK FROM THRA (ENSSVLG00005003484) #15 TO NR1D1 (ENSSVLG00005003454) #16 [REVERSED]
> Marmotini [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Alpin marmot [MODERNSPECIES]
>> CHROMOSOME 42
SYNTENIC BLOCK FROM THRA (ENSMMMG00000007719) #15 TO NR1D1 (ENSMMMG00000007731) #16
> Marmotini_b [ANCESTRALSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Squirrel [MODERNSPECIES]
>> CHROMOSOME 90
SYNTENIC BLOCK FROM THRA (ENSSTOG00000023083) #15 TO NR1D1 (ENSSTOG00000006333) #16
> Arctic ground squirrel [MODERNSPECIES]
>> CHROMOSOME 46
SYNTENIC BLOCK FROM THRA (ENSUPAG00010008149) #15 TO NR1D1 (ENSUPAG00010008169) #16
> Rodentia_B [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Myomorpha [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Muroidea [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Upper Galilee mountains blind mole rat [MODERNSPECIES]
>> CHROMOSOME 655
SYNTENIC BLOCK FROM Thra (ENSNGAG00000015142) #15 TO Nr1d1 (ENSNGAG00000014574) #16
> Muroidea_A [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Murinae [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Rat [MODERNSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM Thra (ENSRNOG00000009066) #15 TO Nr1d1 (ENSRNOG00000009329) #16
> Mus [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Shrew mouse [MODERNSPECIES]
>> CHROMOSOME 5
SYNTENIC BLOCK FROM Thra (MGP_PahariEiJ_G0018225) #15 TO Nr1d1 (MGP_PahariEiJ_G0018226) #16
> Mus_A [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Ryukyu mouse [MODERNSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM Thra (MGP_CAROLIEiJ_G0017096) #15 TO Nr1d1 (MGP_CAROLIEiJ_G0017097) #16
> Mus_B [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Mus_C [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> spretus [MODERNSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM Thra (MGP_SPRETEiJ_G0017940) #15 TO Nr1d1 (MGP_SPRETEiJ_G0017941) #16
> Steppe mouse [MODERNSPECIES]
>> CHROMOSOME 2890
SYNTENIC BLOCK FROM Thra (ENSMSIG00000026472) #15 TO Nr1d1 (ENSMSIG00000026443) #16 [REVERSED]
> Mouse [MODERNSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM Thra (ENSMUSG00000058756) #15 TO Nr1d1 (ENSMUSG00000020889) #16
> Cricetidae [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Cricetidae_B [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Northern American deer mouse [MODERNSPECIES]
>> CHROMOSOME 21
SYNTENIC BLOCK FROM Thra (ENSPEMG00000016154) #15 TO Nr1d1 (ENSPEMG00000015608) #16
> Prairie vole [MODERNSPECIES]
>> CHROMOSOME 114
SYNTENIC BLOCK FROM Thra (ENSMOCG00000012522) #15 TO Nr1d1 (ENSMOCG00000002380) #16 [REVERSED]
> Cricetinae [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Chinese hamster chok1gshd [MODERNSPECIES]
>> CHROMOSOME 33
SYNTENIC BLOCK FROM Thra (ENSCGRG00001001131) #15 TO Nr1d1 (ENSCGRG00001009842) #16
> Golden Hamster [MODERNSPECIES]
>> CHROMOSOME 674
SYNTENIC BLOCK FROM Thra (ENSMAUG00000009313) #15 TO Nr1d1 (ENSMAUG00000018854) #16
> Lesser Egyptian jerboa [MODERNSPECIES]
>> CHROMOSOME 56
SYNTENIC BLOCK FROM Thra (ENSJJAG00000023068) #15 TO Nr1d1 (ENSJJAG00000023393) #16 [REVERSED]
> Kangaroo rat [MODERNSPECIES]
>> CHROMOSOME 326
SYNTENIC BLOCK FROM Thra (ENSDORG00000015567) #15 TO Nr1d1 (ENSDORG00000028821) #16
> Tree shrew [MODERNSPECIES]
>> CHROMOSOME 4637
SYNTENIC BLOCK FROM THRA (ENSTBEG00000017367) #15 TO NR1D1 (ENSTBEG00000017425) #16
> Primates [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Haplorrhini [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Simiiformes [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Catarrhini [ANCESTRALSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Cercopithecidae [ANCESTRALSPECIES]
>> CHROMOSOME 6
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Cercopithecinae [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Cercopithecinae_a [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Cercopithecinae_b [ANCESTRALSPECIES]
>> CHROMOSOME 20
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Olive baboon [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM THRA (ENSPANG00000021701) #15 TO NR1D1 (ENSPANG00000021704) #16
> Cercopithecinae_d [ANCESTRALSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Drill [MODERNSPECIES]
>> CHROMOSOME 1283
SYNTENIC BLOCK FROM THRA (ENSMLEG00000035412) #15 TO NR1D1 (ENSMLEG00000036506) #16 [REVERSED]
> Sooty mangabey [MODERNSPECIES]
>> CHROMOSOME 564
SYNTENIC BLOCK FROM THRA (ENSCATG00000011825) #15 TO NR1D1 (ENSCATG00000040969) #16
> Macaca [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Pig-tailed macaque [MODERNSPECIES]
>> CHROMOSOME 494
SYNTENIC BLOCK FROM THRA (ENSMNEG00000032624) #15 TO NR1D1 (ENSMNEG00000010457) #16 [REVERSED]
> Macaca_a [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Crab-eating macaque [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM THRA (ENSMFAG00000032035) #15 TO NR1D1 (ENSMFAG00000038118) #16
> Rhesus [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM THRA (ENSMMUG00000002931) #15 TO NR1D1 (ENSMMUG00000002933) #16
> Vervet Monkey [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM THRA (ENSCSAG00000002768) #15 TO NR1D1 (ENSCSAG00000002772) #16 [REVERSED]
> Rhinopithecus [ANCESTRALSPECIES]
>> CHROMOSOME 61
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Black snub-nosed monkey [MODERNSPECIES]
>> CHROMOSOME 281
SYNTENIC BLOCK FROM THRA (ENSRBIG00000038091) #15 TO NR1D1 (ENSRBIG00000041040) #16
> Golden snub-nosed monkey [MODERNSPECIES]
>> CHROMOSOME 2925
SYNTENIC BLOCK FROM THRA (ENSRROG00000009873) #15 TO NR1D1 (ENSRROG00000023193) #16 [REVERSED]
> Hominoidea [ANCESTRALSPECIES]
>> CHROMOSOME 13
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Hominidae [ANCESTRALSPECIES]
>> CHROMOSOME 16
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Orangutan [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSPPYG00000039692 #15 TO NR1D1 (ENSPPYG00000008469) #16
> Homo/Pan/Gorilla group [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Gorilla [MODERNSPECIES]
>> CHROMOSOME 18
SYNTENIC BLOCK FROM ENSGGOG00000009661 #15 TO NR1D1 (ENSGGOG00000009668) #16 [REVERSED]
> Homo/Pan group [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Pan [ANCESTRALSPECIES]
>> CHROMOSOME 3
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Chimpanzee [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM THRA (ENSPTRG00000009112) #15 TO NR1D1 (ENSPTRG00000009113) #16 [REVERSED]
> Bonobo [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM ENSPPAG00000037731 #15 TO NR1D1 (ENSPPAG00000042906) #16 [REVERSED]
> Human [MODERNSPECIES]
>> CHROMOSOME 8
SYNTENIC BLOCK FROM THRA (ENSG00000126351) #15 TO NR1D1 (ENSG00000126368) #16
> Gibbon [MODERNSPECIES]
>> CHROMOSOME 9
SYNTENIC BLOCK FROM ENSNLEG00000001519 #15 TO NR1D1 (ENSNLEG00000001535) #16 [REVERSED]
> Platyrrhini [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Cebidae [ANCESTRALSPECIES]
>> CHROMOSOME 10
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Marmoset [MODERNSPECIES]
>> CHROMOSOME 17

DISTANT LINK BETWEEN THRA (ENSCJAG00000040429) #706 AND NR1D1 (ENSCJAG00000015973) #704

> Cebidae_a [ANCESTRALSPECIES]
>> CHROMOSOME 1
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Bolivian squirrel monkey [MODERNSPECIES]
>> CHROMOSOME 208
SYNTENIC BLOCK FROM THRA (ENSSBOG00000034564) #15 TO NR1D1 (ENSSBOG00000011841) #16 [REVERSED]
> Capuchin [MODERNSPECIES]
>> CHROMOSOME 228
SYNTENIC BLOCK FROM THRA (ENSCCAG00000034628) #15 TO NR1D1 (ENSCCAG00000031787) #16
> Mas night monkey [MODERNSPECIES]
>> CHROMOSOME 481
SYNTENIC BLOCK FROM THRA (ENSANAG00000032617) #15 TO NR1D1 (ENSANAG00000025464) #16 [REVERSED]
> Tarsier [MODERNSPECIES]
>> CHROMOSOME 1502
SYNTENIC BLOCK FROM THRA (ENSTSYG00000000599) #15 TO NR1D1 (ENSTSYG00000032107) #16
> Strepsirrhini [ANCESTRALSPECIES]
>> CHROMOSOME 4
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Bushbaby [MODERNSPECIES]
>> CHROMOSOME 133
SYNTENIC BLOCK FROM THRA (ENSOGAG00000005778) #15 TO NR1D1 (ENSOGAG00000005780) #16 [REVERSED]
> Lemuriformes [ANCESTRALSPECIES]
>> CHROMOSOME 2
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16 [REVERSED]
> Mouse lemur [MODERNSPECIES]
>> CHROMOSOME 7
SYNTENIC BLOCK FROM THRA (ENSMICG00000032209) #15 TO NR1D1 (ENSMICG00000003310) #16
> Lemuriformes_a [ANCESTRALSPECIES]
>> CHROMOSOME 0
SYNTENIC BLOCK FROM ENSGT00940000157917 #15 TO ENSGT00940000160548 #16
> Coquerels sifaka [MODERNSPECIES]
>> CHROMOSOME 120
SYNTENIC BLOCK FROM THRA (ENSPCOG00000027187) #15 TO NR1D1 (ENSPCOG00000028277) #16 [REVERSED]
> Greater bamboo lemur [MODERNSPECIES]
>> CHROMOSOME 107
SYNTENIC BLOCK FROM THRA (ENSPSMG00000010831) #15 TO NR1D1 (ENSPSMG00000010853) #16